Query 037694
Match_columns 355
No_of_seqs 218 out of 415
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 05:14:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037694.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037694hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zbk_A Type II DNA topoisomera 100.0 6.3E-89 2.2E-93 675.7 15.6 343 1-355 13-388 (389)
2 2q2e_A Type II DNA topoisomera 100.0 9E-88 3.1E-92 664.8 14.6 344 1-355 16-369 (369)
3 1d3y_A DNA topoisomerase VI A 100.0 1E-85 3.4E-90 634.0 20.6 289 62-355 1-300 (301)
4 2fcj_A Small toprim domain pro 81.4 7.3 0.00025 31.7 8.4 67 183-255 5-71 (119)
5 3eqz_A Response regulator; str 74.7 11 0.00038 28.8 7.5 40 207-246 47-86 (135)
6 3lua_A Response regulator rece 73.8 6 0.0002 30.9 5.8 50 207-257 51-103 (140)
7 3kto_A Response regulator rece 73.7 14 0.00048 28.7 8.0 50 207-257 51-102 (136)
8 1t6t_1 Putative protein; struc 73.3 3.5 0.00012 33.6 4.2 62 183-255 21-83 (118)
9 1dbw_A Transcriptional regulat 71.1 26 0.00088 26.5 8.9 50 207-257 48-97 (126)
10 3jte_A Response regulator rece 70.1 9.8 0.00034 29.7 6.3 41 207-247 50-90 (143)
11 3grc_A Sensor protein, kinase; 69.8 4.8 0.00017 31.4 4.3 38 208-245 52-91 (140)
12 2qxy_A Response regulator; reg 69.4 20 0.00069 27.7 8.1 48 207-257 50-97 (142)
13 3eod_A Protein HNR; response r 69.3 19 0.00065 27.4 7.8 41 207-247 52-92 (130)
14 2rdm_A Response regulator rece 68.7 11 0.00037 28.8 6.2 40 207-246 51-91 (132)
15 3hdg_A Uncharacterized protein 67.7 9.1 0.00031 29.6 5.6 39 207-245 52-90 (137)
16 3heb_A Response regulator rece 67.4 17 0.00058 28.7 7.3 42 206-247 59-102 (152)
17 3kht_A Response regulator; PSI 67.1 13 0.00045 29.0 6.5 40 207-246 52-93 (144)
18 4e7p_A Response regulator; DNA 66.7 13 0.00045 29.4 6.4 40 207-246 67-106 (150)
19 2rjn_A Response regulator rece 65.9 18 0.0006 28.7 7.1 39 207-245 52-90 (154)
20 3i42_A Response regulator rece 65.7 9.3 0.00032 29.1 5.2 39 208-246 49-89 (127)
21 3hv2_A Response regulator/HD d 65.3 18 0.00063 28.6 7.1 39 207-245 59-97 (153)
22 2qr3_A Two-component system re 64.2 15 0.00052 28.2 6.3 39 207-245 48-91 (140)
23 4dad_A Putative pilus assembly 64.2 18 0.00063 28.2 6.9 41 207-247 68-108 (146)
24 1qkk_A DCTD, C4-dicarboxylate 63.9 29 0.00098 27.4 8.1 50 207-257 48-97 (155)
25 3f6c_A Positive transcription 62.0 10 0.00034 29.2 4.8 40 207-246 47-86 (134)
26 3cg4_A Response regulator rece 59.7 19 0.00063 27.9 6.0 34 209-242 54-89 (142)
27 2cxh_A Probable BRIX-domain ri 59.5 6.3 0.00022 35.4 3.4 31 206-236 33-63 (217)
28 2gkg_A Response regulator homo 58.9 16 0.00055 27.3 5.4 32 209-240 52-86 (127)
29 3nhm_A Response regulator; pro 58.7 26 0.00089 26.6 6.7 38 207-244 48-87 (133)
30 1srr_A SPO0F, sporulation resp 57.3 24 0.00084 26.5 6.2 39 207-245 48-86 (124)
31 3eul_A Possible nitrate/nitrit 57.2 20 0.00069 28.2 5.9 41 207-247 62-102 (152)
32 3kcn_A Adenylate cyclase homol 56.6 32 0.0011 27.0 7.1 39 208-246 50-88 (151)
33 3lte_A Response regulator; str 55.8 26 0.00091 26.5 6.3 39 208-246 52-92 (132)
34 3snk_A Response regulator CHEY 55.6 8.1 0.00028 30.0 3.2 40 207-246 60-99 (135)
35 1yio_A Response regulatory pro 55.4 35 0.0012 28.4 7.5 51 206-257 48-98 (208)
36 3cu5_A Two component transcrip 55.4 27 0.00094 27.2 6.4 38 207-244 50-87 (141)
37 3hzh_A Chemotaxis response reg 55.4 35 0.0012 27.1 7.2 39 208-246 85-123 (157)
38 2j48_A Two-component sensor ki 55.2 24 0.0008 25.8 5.7 40 208-247 47-88 (119)
39 3hdv_A Response regulator; PSI 54.7 20 0.00068 27.5 5.4 39 207-245 53-92 (136)
40 1k68_A Phytochrome response re 53.5 42 0.0014 25.3 7.1 40 207-246 56-97 (140)
41 2pl1_A Transcriptional regulat 53.5 28 0.00097 25.8 6.0 50 207-257 45-94 (121)
42 3a10_A Response regulator; pho 53.4 29 0.00099 25.6 6.0 38 207-244 46-83 (116)
43 2b4a_A BH3024; flavodoxin-like 53.1 16 0.00056 28.2 4.7 18 183-200 16-33 (138)
44 3mm4_A Histidine kinase homolo 53.1 35 0.0012 28.9 7.2 38 207-244 120-161 (206)
45 3h1g_A Chemotaxis protein CHEY 52.4 45 0.0015 25.3 7.1 40 207-246 52-93 (129)
46 3f6p_A Transcriptional regulat 52.2 66 0.0022 24.0 8.0 40 207-247 47-86 (120)
47 3gl9_A Response regulator; bet 51.6 58 0.002 24.5 7.6 40 207-246 47-88 (122)
48 3crn_A Response regulator rece 51.0 27 0.00091 26.8 5.6 39 207-245 48-86 (132)
49 3h5i_A Response regulator/sens 50.5 37 0.0013 26.2 6.4 16 184-199 7-22 (140)
50 1mvo_A PHOP response regulator 50.5 35 0.0012 25.9 6.2 37 208-244 49-85 (136)
51 2jba_A Phosphate regulon trans 49.9 35 0.0012 25.6 6.0 40 207-246 47-88 (127)
52 3gt7_A Sensor protein; structu 49.2 58 0.002 25.6 7.5 39 207-245 52-92 (154)
53 3rqi_A Response regulator prot 48.3 32 0.0011 28.4 6.0 50 207-257 52-101 (184)
54 3ilh_A Two component response 47.5 55 0.0019 25.0 7.0 39 207-245 61-103 (146)
55 2qvg_A Two component response 47.1 35 0.0012 26.3 5.7 39 207-245 60-100 (143)
56 3n53_A Response regulator rece 46.2 26 0.00089 27.0 4.8 17 291-307 105-122 (140)
57 1kgs_A DRRD, DNA binding respo 45.0 38 0.0013 28.6 6.0 51 207-258 47-97 (225)
58 2jk1_A HUPR, hydrogenase trans 44.8 99 0.0034 23.5 8.1 40 207-246 45-84 (139)
59 2pln_A HP1043, response regula 42.9 57 0.0019 24.9 6.4 40 216-257 68-108 (137)
60 1k66_A Phytochrome response re 42.8 31 0.0011 26.5 4.8 39 207-245 63-103 (149)
61 1p2f_A Response regulator; DRR 42.3 69 0.0024 26.9 7.3 51 207-258 44-94 (220)
62 1ys7_A Transcriptional regulat 41.9 44 0.0015 28.3 6.0 40 207-246 52-91 (233)
63 3vxv_A Methyl-CPG-binding doma 41.8 20 0.00067 26.3 3.1 50 85-137 19-68 (69)
64 1jbe_A Chemotaxis protein CHEY 41.1 1.1E+02 0.0037 22.7 7.7 50 207-257 50-101 (128)
65 2zqe_A MUTS2 protein; alpha/be 41.0 50 0.0017 24.7 5.4 48 195-246 22-70 (83)
66 3cfy_A Putative LUXO repressor 40.0 55 0.0019 25.2 5.9 39 207-245 49-87 (137)
67 1xhf_A DYE resistance, aerobic 39.6 1E+02 0.0034 22.7 7.2 38 207-245 48-85 (123)
68 3t6k_A Response regulator rece 38.4 82 0.0028 24.1 6.7 37 208-244 50-88 (136)
69 1i3c_A Response regulator RCP1 36.7 1.3E+02 0.0043 23.3 7.7 50 207-257 62-113 (149)
70 1zh2_A KDP operon transcriptio 36.4 96 0.0033 22.6 6.6 39 207-246 46-84 (121)
71 3r0j_A Possible two component 36.1 69 0.0024 27.7 6.4 51 207-258 68-118 (250)
72 3q9s_A DNA-binding response re 35.5 1E+02 0.0034 26.9 7.5 50 207-258 82-131 (249)
73 3t8y_A CHEB, chemotaxis respon 35.2 85 0.0029 25.0 6.5 50 207-257 72-122 (164)
74 2a9o_A Response regulator; ess 34.6 1.1E+02 0.0037 22.3 6.6 49 207-257 46-94 (120)
75 2zay_A Response regulator rece 33.4 1.5E+02 0.0052 22.5 7.6 50 207-257 53-104 (147)
76 3cnb_A DNA-binding response re 32.6 1.6E+02 0.0054 22.1 7.9 41 207-247 55-97 (143)
77 1tmy_A CHEY protein, TMY; chem 32.3 86 0.0029 23.0 5.7 50 207-257 48-97 (120)
78 1qo0_D AMIR; binding protein, 32.3 2E+02 0.0067 23.4 8.5 72 184-257 14-101 (196)
79 2hqr_A Putative transcriptiona 32.1 1.1E+02 0.0036 25.7 6.9 41 216-258 50-91 (223)
80 1hji_B NUN-protein; bacterioph 31.1 76 0.0026 18.2 3.6 23 293-325 4-26 (26)
81 3cz5_A Two-component response 30.5 1.9E+02 0.0063 22.3 8.3 50 207-257 52-101 (153)
82 3b2n_A Uncharacterized protein 29.8 57 0.0019 24.9 4.3 50 207-257 50-99 (133)
83 2qsj_A DNA-binding response re 29.0 84 0.0029 24.4 5.3 69 185-257 32-100 (154)
84 3c3m_A Response regulator rece 28.4 1.5E+02 0.005 22.5 6.6 37 208-244 49-87 (138)
85 3qd7_X Uncharacterized protein 27.9 1.3E+02 0.0044 24.7 6.3 51 194-246 64-119 (137)
86 1w94_A MIL, probable BRIX-doma 27.2 31 0.0011 29.1 2.4 28 209-237 2-29 (156)
87 1mb3_A Cell division response 26.9 86 0.0029 23.1 4.8 14 185-198 4-17 (124)
88 1p6q_A CHEY2; chemotaxis, sign 26.1 1E+02 0.0034 23.0 5.1 35 209-243 54-90 (129)
89 3rst_A Signal peptide peptidas 25.9 73 0.0025 28.3 4.8 101 206-308 47-168 (240)
90 3c97_A Signal transduction his 25.7 1.7E+02 0.0058 22.1 6.5 63 184-255 12-77 (140)
91 2ayx_A Sensor kinase protein R 24.5 99 0.0034 27.0 5.4 18 183-200 130-147 (254)
92 2ioj_A Hypothetical protein AF 22.6 61 0.0021 26.0 3.3 57 184-249 55-112 (139)
93 2oqr_A Sensory transduction pr 22.3 1.3E+02 0.0045 25.2 5.6 50 207-258 49-98 (230)
94 3kio_A Ribonuclease H2 subunit 21.9 29 0.00098 32.7 1.2 19 212-230 207-226 (301)
95 3m6m_D Sensory/regulatory prot 21.3 2.2E+02 0.0076 21.7 6.5 17 184-200 16-32 (143)
96 1gpw_B Amidotransferase HISH; 21.1 59 0.002 27.6 3.0 45 204-254 41-93 (201)
97 3to5_A CHEY homolog; alpha(5)b 20.9 1.9E+02 0.0066 23.0 6.1 16 185-200 15-30 (134)
98 1ka9_H Imidazole glycerol phos 20.5 52 0.0018 28.0 2.6 44 205-254 40-91 (200)
99 2ky8_A Methyl-CPG-binding doma 20.4 55 0.0019 24.0 2.3 31 86-118 27-57 (72)
No 1
>2zbk_A Type II DNA topoisomerase VI subunit A; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=100.00 E-value=6.3e-89 Score=675.69 Aligned_cols=343 Identities=27% Similarity=0.423 Sum_probs=294.2
Q ss_pred ChhHHHHHHHHHH----HHHcCCC-CCCccccccccCCCCceeccccccccceeeecCceeEEeecCchhHHHHHHHHHH
Q 037694 1 VRARIEVSVINFL----KILNSPD-PAISDLPLINRKSSNSRVSQGLLTDVSWIFLSHSFCTRSLTKSNAAKAFVRVWKV 75 (355)
Q Consensus 1 ~~~~Ie~~v~~~l----~~L~~~~-p~~~~l~~~~R~~~n~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~v 75 (355)
|+++||+++.+++ +++.+|+ |. +++|+|+++|+.||+. .+.+.+|++.+.|++.+.++|++|+++++|
T Consensus 13 ~~~~i~~~~~~~~~~~~~~~~~~~~p~---~~~p~r~~~n~~~d~~----~~~~~~~~~~~~r~~~~~~~~~~f~~~~~v 85 (389)
T 2zbk_A 13 ARRKAANILRDKFLNLVEQLKKGEPLV---MEIPMRTLSNAIYDEK----RKLLLLGEKKLRRNFLDLNEAKRFMQTVLM 85 (389)
T ss_dssp HHHHHHHHTTHHHHHHHCCCCCSSCCE---ECCCC-------------------------CCEETTSSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCE---EeccccCcCceeeccc----cceEEecCceeEEecCCHHHHHHHHHHHHH
Confidence 5789999999999 9999999 66 7889999999999974 346679999999999999999999999999
Q ss_pred HHHHHHHHhcCCCccccceeccccC-------------CCccccCchHHHHHHHHHHHHhhccCccccCceecCCeeEEE
Q 037694 76 METCFQILSQEKRVTQRELFYKLLC-------------DSPEYFTSQLQVNRTIQDVIALLHCSRFSLGIVASSRGLVAG 142 (355)
Q Consensus 76 l~~i~~~l~~~~~~T~RdiYY~~~~-------------~~~~lF~~Q~~~d~~i~di~~~l~~~R~~L~I~a~~KGlv~G 142 (355)
++++|++|.+|+++|+|||||++++ |++++|++|++||++|+|||++++++|++|||+|++||+|+|
T Consensus 86 l~~i~~~l~~~~~~T~RdiYY~~~~~~~~~~~~~~~~~~~~~~F~~Q~~~d~~I~di~~~l~~~R~~L~I~a~~kGlv~G 165 (389)
T 2zbk_A 86 ASIIYDALVSDEYPTIRDLYYRGKHSLLLKSIEGNKIVSEENTWDEQKESDSVIVDIEVFTSLLREEMLILSKEKGKVVG 165 (389)
T ss_dssp THHHHHHHHTTCCCCHHHHHSCCSCSCCSCCCC-------CCSCCSHHHHHHHHHHHHHHHSCCHHHHTCCCCCCCCBEE
T ss_pred HHHHHHHHHcCCccchHHhhccCcccccccccccccccchhhhcCCHHHHHHHHHHHHHHHCCChhhcceEecCCcEEEe
Confidence 9999999999999999999999776 666699999999999999999999999999999999999999
Q ss_pred eeEEecCCCceEecccCCCCccccCCChhhhhhhccccCccEEEEEehhhHHHHHHhccccCCCCEEEEEcCCCCChHHH
Q 037694 143 RLMLQEPNQEVIDCSACGSSGYSISGDLSLLEKLDLKTDARYIIVVEKHAIFQRLTEDFVFNQIPSILITAKGYPDIATR 222 (355)
Q Consensus 143 ~l~i~~~~~~~id~s~~g~~g~~Ip~~~~~i~~~~i~~~a~~VLvVEK~avF~rL~~~~~~~~~~~IlITgkGyPd~~TR 222 (355)
++++.+ +|+.+||+.+|++|++||++++.++. +.++|++||||||+|+|++|++++|+++.|||+||||||||++||
T Consensus 166 ~l~i~~-~~~~id~~~~g~~g~~Ip~~~~~i~~--i~~~a~~VLvVEK~avF~rL~~~~~~~~~~~ilIt~kG~Pd~aTR 242 (389)
T 2zbk_A 166 NLRIRS-GNDVIDLSKTGHGAYAIEPTPDLIDF--IDVDAEFVLVVEKDAVFQQLHRAGFWKQYKSILITSAGQPDRATR 242 (389)
T ss_dssp SEEEEE-TTEEEESSCCTTCCBCCCSCCSSEEE--EEECCSCEEEESCHHHHHHHHTTTHHHHTTCEEEECCSSCCTTHH
T ss_pred eeEEEe-CCcEEEeecCCCCceeCCccHHHhhc--cccCccEEEEEecHHHHHHHHHhCcCccCCEEEEECCCCCCHHHH
Confidence 999998 67899999988899999988877654 368999999999999999999999999899999999999999999
Q ss_pred HHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcCCccccccccccccc-ceeecccccccccCCCCccCCCCHHH----
Q 037694 223 FLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFGSIGMGMEAYRYACN-VKWLGLRGDDVQLIPEQSLLPLKPRD---- 297 (355)
Q Consensus 223 ~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~GS~~~~~~~~~~~~~-~~wlGv~~~di~~l~~~~~~pLt~~D---- 297 (355)
+||++|++++ ++|||+|+|+||||++|+++|+|||++++|+++.+++| ++|+|++++|+...+. ...|||++|
T Consensus 243 ~fL~~L~~~~-~lpv~~l~D~DP~Gi~I~~tyk~GS~~~a~~~~~l~~P~l~~lG~~~~di~~~~~-~~~~Lt~~Dr~~~ 320 (389)
T 2zbk_A 243 RFVRRLNEEL-KLPVYILTDADPYGWYIFSVFRIGSISLSYESERLATPDAKFLGVSMGDIFGNSR-KKPYLSEAERKNY 320 (389)
T ss_dssp HHHHHHHHHS-CCCEEEECCSSHHHHHHHHHHTSCSCC-----CCCSCSSCEECCCCHHHHHCCSS-SCCSSCHHHHHHH
T ss_pred HHHHHHHHhc-CCCEEEEecCChhhhhhHHHHhhcchhhhhhhhcccCCceEEcCCcHHHHHhccc-ccccCChhhhhhH
Confidence 9999999998 89999999999999999999999999999999887665 9999999999986432 248999999
Q ss_pred -HHHHHHhhhhh-------hhh-HHHHHHHHHHHHcCCeEeeeehhhcCCchHH-HHHHHHHhcCCCC
Q 037694 298 -LQIARSLMSSE-------ILQ-ENYKEELSLMVHNGQRAEVEALYFHGYDYLG-KYIAKKIVQADYI 355 (355)
Q Consensus 298 -~~~l~~ll~~~-------~~~-~~w~~el~~ml~~~~KaEiEal~~~g~~fl~-~Yl~~Ki~~~~~i 355 (355)
++++++++++| +++ +.|++|+++|++.|+|+|||||+++|++|++ +|||+||.++|||
T Consensus 321 ~~k~l~~ll~~~~~~~~~~~~~~~~w~~el~~Ml~~~~KaE~Eal~~~g~~fl~~~yl~~Ki~~~~~i 388 (389)
T 2zbk_A 321 IIKAKDADIKRAEEIKNYEWFKTKAWQEEINTFLQRKAKLEIEAMASKGLKFLAFQYIPEKITNKDYI 388 (389)
T ss_dssp CEECCHHHHHHHHHHTTSTTTTTTTTTHHHHHHHHHCEECCHHHHHTTCTHHHHHTHHHHHHHHTCSB
T ss_pred HHHHHHHHHhchhhcccchhccCHHHHHHHHHHHHhCceeeeHHhhhcCchhhHHHHHHHHHhcCCCc
Confidence 89999999988 663 4899999999999999999999999999999 7999999999997
No 2
>2q2e_A Type II DNA topoisomerase VI subunit A; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=100.00 E-value=9e-88 Score=664.82 Aligned_cols=344 Identities=23% Similarity=0.327 Sum_probs=285.8
Q ss_pred ChhHHHHHHHHHHHHHcCCC-CCCccccccccCCCCceeccccccccceeeecCceeEEeecCchhHHHHHHHHHHHHHH
Q 037694 1 VRARIEVSVINFLKILNSPD-PAISDLPLINRKSSNSRVSQGLLTDVSWIFLSHSFCTRSLTKSNAAKAFVRVWKVMETC 79 (355)
Q Consensus 1 ~~~~Ie~~v~~~l~~L~~~~-p~~~~l~~~~R~~~n~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~f~~~~~vl~~i 79 (355)
|+++||+++.+++++|.+|+ |. +++|+|+++|+.||+. .+.+.+|++.+.|++.+.+++++|+++++||+++
T Consensus 16 ~~~~i~~~~~~~~~~l~~~~~p~---~~i~~r~~~n~~~d~~----~~~~~~~~~~~~r~~~~~~~~~~~~~~~~vl~~i 88 (369)
T 2q2e_A 16 AREKLLEIAEKIYNQFEEEVVPS---VSLPSRTKANLEYSDE----SDVWVYGDRESERSAKTVKGAFQLLKTTYATDFL 88 (369)
T ss_dssp CCHHHHHHHHHHHHTTHHHHTTS---CCCCC----------------------------CCSSTHHHHHHHCC-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCe---EEeeccccCceeeccc----CCeeeecCceeeEecCCHHHHHHHHHHHHHHHHH
Confidence 67899999999999999998 76 7889999999999974 3466789999999999999999999999999999
Q ss_pred -HHHHhcCCCccccceeccccCCCccccCchHHHHHHHHHHHHhhccCccccCceecCCe-eEEEeeEEecC---CCceE
Q 037694 80 -FQILSQEKRVTQRELFYKLLCDSPEYFTSQLQVNRTIQDVIALLHCSRFSLGIVASSRG-LVAGRLMLQEP---NQEVI 154 (355)
Q Consensus 80 -~~~l~~~~~~T~RdiYY~~~~~~~~lF~~Q~~~d~~i~di~~~l~~~R~~L~I~a~~KG-lv~G~l~i~~~---~~~~i 154 (355)
|+++.+|+++|+|||||++++|++++|++|++||++|+|||++++++|++|||+|++|| +|+|++++... +|..|
T Consensus 89 ~~~~l~~~~~~T~RdiYY~~~~~~~~lF~~Q~~~d~~I~di~~~l~~~R~~L~I~a~~kG~lv~G~l~i~~~~~~~~~~i 168 (369)
T 2q2e_A 89 INEHLARNRGSTLRELYYISEGWDYAKFKEQGESDRLIEDLEILTSLQREYFHMRPEEDGATMFGPIEITEQTKRGERNI 168 (369)
T ss_dssp TTTSSTTCCCEEHHHHHHHTSSSTTSCCSCTTTHHHHHHHHHHHSCCCGGGGTEECSSCCCCEECSCCCCCCSSCC----
T ss_pred HHHHHhcCCccchHHhhccCcccchhhccCHHHHHHHHHHHHHHHCCCHHHcceeccCCceEEEEeEEEEEEecCCCcEE
Confidence 99999999999999999987777799999999999999999999999999999999999 89999999875 46899
Q ss_pred eccc-CCCCccccCCChhhhhhhccccCccEEEEEehhhHHHHHHhccccCCCCEEEEEcCCCCChHHHHHHHHHHhhCC
Q 037694 155 DCSA-CGSSGYSISGDLSLLEKLDLKTDARYIIVVEKHAIFQRLTEDFVFNQIPSILITAKGYPDIATRFLLHRLNRAFP 233 (355)
Q Consensus 155 d~s~-~g~~g~~Ip~~~~~i~~~~i~~~a~~VLvVEK~avF~rL~~~~~~~~~~~IlITgkGyPd~~TR~fL~~L~~~~~ 233 (355)
||+. +|.+|++||++++.++. +.++|++||||||+|+|++|++++|+++.+||+||||||||++||+||++|++++
T Consensus 169 d~~~~~g~~g~~Ip~~~~~i~~--i~~~~~~VlvVEk~avF~~L~~~~~~~~~~~ilIt~kG~Pd~atR~~L~~L~~~~- 245 (369)
T 2q2e_A 169 HCQKDVGEGGYQIPFNVENIEF--QKHDASMIIAIETGGMYARLMENGFDEAYNAILVHLKGQPARSTRRIIKRMNEEL- 245 (369)
T ss_dssp CCCC-CCSSCCCCCSCSSSCCC--CCCCCCCEEEECCTTHHHHHHHSCCTTTTCCCEEECCSSCCHHHHHHHHHHTTSS-
T ss_pred EecccCCCCCeeCCccHHHhhc--ccCCccEEEEEechHHHHHHHHhccCccCCEEEEECCCCCCHHHHHHHHHHHHhc-
Confidence 9998 88899999997776654 4688999999999999999999999999999999999999999999999999988
Q ss_pred CCCEEEEecCChhhHHHHHHhhcCCcccccccccccc-cceeecccccccccCCCCccCCCCHHHHHHHHHhhhhhhhh-
Q 037694 234 DLPILALVDWNPAGLAILCTFKFGSIGMGMEAYRYAC-NVKWLGLRGDDVQLIPEQSLLPLKPRDLQIARSLMSSEILQ- 311 (355)
Q Consensus 234 ~lpv~~l~D~DP~Gi~I~~~yk~GS~~~~~~~~~~~~-~~~wlGv~~~di~~l~~~~~~pLt~~D~~~l~~ll~~~~~~- 311 (355)
++|||+|+|+||||++|+++|+|||++++|+++.+++ +++|+|++++|+..... ...|||++|+++++++|++|+++
T Consensus 246 ~~pv~~l~D~Dp~Gi~I~~tyk~GS~~~~~~~~~l~~p~~~~lgm~~~d~~~~~~-~~~~Lt~~D~k~l~~ll~~~~~~~ 324 (369)
T 2q2e_A 246 GIPVAVFTDGDPWSYRIYASVAYGAIKSAHLSEFMATPAAKFLGLQPSDIVEYEL-STDKLTEQDVSALRSELSDPRFES 324 (369)
T ss_dssp CCCEEEECCSSHHHHTTTHHHHSCC--------CCCCTTCBCCSSCTTTTTSSCC-CCCCCCHHHHHHHTTTTSSCSSCC
T ss_pred CCcEEEEecCChhHHHHHHHHhccchhhhhhhcccCCCccEECCCCHHHHHhccc-ccCCCCHHHHHHHHHHhhCcccCC
Confidence 8999999999999999999999999999999987765 59999999999986432 34899999999999999999884
Q ss_pred HHHHHHHHHHHHcCCeEeeeehhhcCCchHH-HHHHHHHhcCCCC
Q 037694 312 ENYKEELSLMVHNGQRAEVEALYFHGYDYLG-KYIAKKIVQADYI 355 (355)
Q Consensus 312 ~~w~~el~~ml~~~~KaEiEal~~~g~~fl~-~Yl~~Ki~~~~~i 355 (355)
+.|++|+++|++.|+|+|||||+++|++|++ +|||+||.++|||
T Consensus 325 ~~w~~el~~ml~~~~K~EqEal~~~g~~~~~~~yl~~Ki~~~~~~ 369 (369)
T 2q2e_A 325 DYWKEQIQLQLDIGKKAEQQAFAGKGLDFVTEVYLPNRLKEMGMI 369 (369)
T ss_dssp TTTTHHHHHHHHHCCCCCSGGGGGGCTTSTTTTHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHhCcEeeehhhhhcCchhhHHHHHHHHHhcCCcC
Confidence 4899999999999999999999999999998 7999999999997
No 3
>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog; HET: DNA; 2.00A {Methanocaldococcus jannaschii} SCOP: e.12.1.1
Probab=100.00 E-value=1e-85 Score=634.02 Aligned_cols=289 Identities=29% Similarity=0.457 Sum_probs=259.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhcCCCccccceeccccCCCccccCchHHHHHHHHHHHHhhccCccccCceecCCe-eE
Q 037694 62 KSNAAKAFVRVWKVMETCFQILSQEKRVTQRELFYKLLCDSPEYFTSQLQVNRTIQDVIALLHCSRFSLGIVASSRG-LV 140 (355)
Q Consensus 62 ~~~~~~~f~~~~~vl~~i~~~l~~~~~~T~RdiYY~~~~~~~~lF~~Q~~~d~~i~di~~~l~~~R~~L~I~a~~KG-lv 140 (355)
|++++++|+++++||+++|++|.+|+++|+|||||++++|++++|++|++||++|+|||++++++|++|||+|++|| +|
T Consensus 1 ~~~~~~~~~~~~~vl~~i~~~l~~~~~~T~RdiYY~~~~~~~~~F~~Q~~~d~~i~di~~~l~~~R~~L~i~a~~kG~lv 80 (301)
T 1d3y_A 1 TVNQAKIFAQTTKMLEFAKQLLETDDFSTLREAYYVSKNWGEARFDDQQASNNVIEDLEAALGVLREHLGFIPEEDGSSV 80 (301)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHTTCCEEHHHHHHHGGGSGGGCCSSHHHHHHHHHHHHHHHTCCGGGGTEECSSCCCEE
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCccchhhhhccCCccchhhccCHHHHHHHHHHHHHHHCCCHHHCCeeeCCCceEE
Confidence 45789999999999999999999999999999999987777899999999999999999999999999999999999 99
Q ss_pred EEeeEEecC---CCceEecccCCCCccccCCChhhhhhhccccCccEEEEEehhhHHHHHHhccccCCCCEEEEEcCCCC
Q 037694 141 AGRLMLQEP---NQEVIDCSACGSSGYSISGDLSLLEKLDLKTDARYIIVVEKHAIFQRLTEDFVFNQIPSILITAKGYP 217 (355)
Q Consensus 141 ~G~l~i~~~---~~~~id~s~~g~~g~~Ip~~~~~i~~~~i~~~a~~VLvVEK~avF~rL~~~~~~~~~~~IlITgkGyP 217 (355)
+|++++.+. ++..|||+.+|++|++||++++.+ ++.++|+|||||||+|+|+||++++|+++.|||||||||||
T Consensus 81 ~G~l~i~~~~~~~~~~id~~~~~~~g~~Ip~~~~~i---~~~~~a~~VLvVEK~avF~rL~~~~~~~~~~~ilIt~kGyP 157 (301)
T 1d3y_A 81 VGPLKIIEETPEGELVVDCTKLGTGAYNIPNDVTKL---NLETDADFILAIETSGMFARLNAERFWDKHNCILVSLKGVP 157 (301)
T ss_dssp ESSCEEEEEETTEEEEEETTSCTTSEEECCSCCTTC---EEECCCSEEEEESCHHHHHHHHHTTHHHHTTEEEEECCSSC
T ss_pred EeeeEEEEeecCCCcEEEeecCCCCceecCccHHhh---eeccCccEEEEEechHHHHHHHHhcccccCCEEEEECCCCC
Confidence 999999764 357999998888999999987654 34799999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHhhCCCCCEEEEecCChhhH-HHHHHhhcCCccccccccccccc-ceeecccccccccCCCCccCCCCH
Q 037694 218 DIATRFLLHRLNRAFPDLPILALVDWNPAGL-AILCTFKFGSIGMGMEAYRYACN-VKWLGLRGDDVQLIPEQSLLPLKP 295 (355)
Q Consensus 218 d~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi-~I~~~yk~GS~~~~~~~~~~~~~-~~wlGv~~~di~~l~~~~~~pLt~ 295 (355)
|++||+||++|++++ ++|||+|||+||||+ +||++|||||++++|+++.+++| ++|+|++|+|+...+. ..+|||+
T Consensus 158 d~aTR~fl~~L~~~~-~lpv~~l~D~DP~G~~~I~~tyk~GS~~~~~~~~~l~~p~~~wlGv~~sdi~~~~~-~~~~Lt~ 235 (301)
T 1d3y_A 158 ARATRRFIKRLHEEH-DLPVLVFTDGDPYGYLNIYRTLKVGSGKAIHLADKLSIPAARLIGVTPQDIIDYDL-PTHPLKE 235 (301)
T ss_dssp CHHHHHHHHHHHHHH-TCCEEEECCBSHHHHHTHHHHHHC---------CTTCCTTCEEEESCHHHHHHTTC-CCEECCH
T ss_pred CHHHHHHHHHHHHhc-CCCEEEEecCChHHHHHHHHHHHhCchhhccccccccCCccEEcCCCHHHHHhccc-ccCcCCH
Confidence 999999999999998 899999999999999 99999999999999999888765 9999999999986432 3589999
Q ss_pred HHHHHHHHhhhhhhhhH---HHHHHHHHHHHcCCeEeeeehhhcCCchHH-HHHHHHHhcCC-CC
Q 037694 296 RDLQIARSLMSSEILQE---NYKEELSLMVHNGQRAEVEALYFHGYDYLG-KYIAKKIVQAD-YI 355 (355)
Q Consensus 296 ~D~~~l~~ll~~~~~~~---~w~~el~~ml~~~~KaEiEal~~~g~~fl~-~Yl~~Ki~~~~-~i 355 (355)
+|++++++||++|+++. +|++||++|++.|+||||||++++|++|++ +|||+||.+++ ||
T Consensus 236 ~D~~~l~~ll~~~~~~~~~~~w~~el~~ml~~~~KaEieal~~~g~~f~~~~yl~~Ki~~~~~~~ 300 (301)
T 1d3y_A 236 QDIKRIKDGLKNDDFVRSFPEWQKALKQMLDMGVRAEQQSLAKYGLKYVVNTYLPEKIKDESTWL 300 (301)
T ss_dssp HHHHHHHHHHHHCHHHHTCHHHHHHHHHHHHHTEEBCGGGGGGGCTTHHHHTHHHHHHHCGGGCC
T ss_pred HHHHHHHHHhhCccccCcHHHHHHHHHHHHHhCCEEEEehhhhcCccchHHHHHHHHHhcCCcCC
Confidence 99999999999999863 599999999999999999999999999998 79999999999 97
No 4
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=81.39 E-value=7.3 Score=31.74 Aligned_cols=67 Identities=19% Similarity=0.191 Sum_probs=48.2
Q ss_pred cEEEEEehhhHHHHHHhccccCCCCEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhh
Q 037694 183 RYIIVVEKHAIFQRLTEDFVFNQIPSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFK 255 (355)
Q Consensus 183 ~~VLvVEK~avF~rL~~~~~~~~~~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk 255 (355)
+-|+|||=.+=-.+|.+-+-. ++=.|.+.|+-+..+...+..+.. .=.|++|+|+|.-|-.|....+
T Consensus 5 ~~vIVVEGk~D~~~L~~~~~~---~~~iI~t~Gsi~~~~l~~I~~~~~---~r~VIi~TD~D~~GekIRk~i~ 71 (119)
T 2fcj_A 5 EKVIIVEGRSDKQKVAAVLNE---PVVIVCTNGTISDARLEELADELE---GYDVYLLADADEAGEKLRRQFR 71 (119)
T ss_dssp CEEEEESSHHHHHHHHHHBSS---CCEEEECCSCCCHHHHHHHHHHTT---TSEEEEECCSSHHHHHHHHHHH
T ss_pred CeEEEEechHHHHHHHHhcCC---CCCEEEeCCccCHHHHHHHHHHhc---CCCEEEEECCCccHHHHHHHHH
Confidence 569999988777788665411 355666677755556666666654 3479999999999999987654
No 5
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=74.68 E-value=11 Score=28.81 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=33.9
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPA 246 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~ 246 (355)
+-++|..-..|+...-.++++|.+..|++|++.+++.+..
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 86 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSG 86 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccch
Confidence 6788888888999999999999988888999888877654
No 6
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=73.84 E-value=6 Score=30.94 Aligned_cols=50 Identities=14% Similarity=0.293 Sum_probs=35.7
Q ss_pred CEEEEEcCCCC-ChHHHHHHHHHHh--hCCCCCEEEEecCChhhHHHHHHhhcC
Q 037694 207 PSILITAKGYP-DIATRFLLHRLNR--AFPDLPILALVDWNPAGLAILCTFKFG 257 (355)
Q Consensus 207 ~~IlITgkGyP-d~~TR~fL~~L~~--~~~~lpv~~l~D~DP~Gi~I~~~yk~G 257 (355)
+-++|.--..| +...-.+++.|.+ ..|++||+.++..+.... +...++.|
T Consensus 51 ~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~~~~-~~~~~~~g 103 (140)
T 3lua_A 51 ITLIIMDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGY-RHAALKFK 103 (140)
T ss_dssp CSEEEECSCSSSHHHHHHHHHHHHHSGGGTTCCEEEEESCCCHHH-HHHHHHSC
T ss_pred CcEEEEeCCCCCCCcHHHHHHHHHhCcccCCCCEEEEeCCCCHHH-HHHHHHcC
Confidence 56777888888 8888889998888 677899988887654433 33334444
No 7
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=73.72 E-value=14 Score=28.66 Aligned_cols=50 Identities=16% Similarity=0.079 Sum_probs=37.6
Q ss_pred CEEEEEcCCCCC--hHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcC
Q 037694 207 PSILITAKGYPD--IATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFG 257 (355)
Q Consensus 207 ~~IlITgkGyPd--~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~G 257 (355)
+.++|.--..|+ ...-.++++|.+..|++|++.+++.+..... ...++.|
T Consensus 51 ~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~-~~~~~~g 102 (136)
T 3kto_A 51 AIGMIIEAHLEDKKDSGIELLETLVKRGFHLPTIVMASSSDIPTA-VRAMRAS 102 (136)
T ss_dssp EEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCEEEEESSCCHHHH-HHHHHTT
T ss_pred CCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCEEEEEcCCCHHHH-HHHHHcC
Confidence 567888888898 8889999999988888999999887655433 2334444
No 8
>1t6t_1 Putative protein; structural genomics, PSI, protein structur initiative, midwest center for structural genomics, MCSG, U function; 1.80A {Aquifex aeolicus} SCOP: c.136.1.1
Probab=73.29 E-value=3.5 Score=33.61 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=43.0
Q ss_pred cEEEEEehhhHHHHHHhccccCCCCEEEEEcCCCCChHHHHHHHHHHhhCCCCC-EEEEecCChhhHHHHHHhh
Q 037694 183 RYIIVVEKHAIFQRLTEDFVFNQIPSILITAKGYPDIATRFLLHRLNRAFPDLP-ILALVDWNPAGLAILCTFK 255 (355)
Q Consensus 183 ~~VLvVEK~avF~rL~~~~~~~~~~~IlITgkGyPd~~TR~fL~~L~~~~~~lp-v~~l~D~DP~Gi~I~~~yk 255 (355)
+.|+|||=-.-=.+|.+-++. +. |.+.|.| . -..++.|+. .-. |++|+|+|..|-.|.....
T Consensus 21 ~~vIvVEGk~D~~~L~~~g~~---~i--I~t~Gta-l--~~~i~~l~~---~~~~VIIltD~D~aGe~ir~~i~ 83 (118)
T 1t6t_1 21 EAVILVEGKNDKKALSKFSIK---NV--IDLSGKR-Y--ADVVDMLEG---KWEKVILLFDLDTHGERINQKMK 83 (118)
T ss_dssp TSEEEESSHHHHHHHHTTTCC---CE--EECTTSC-H--HHHHHHHTT---TCSEEEECCCSSHHHHHHHHHHH
T ss_pred CcEEEEEChHHHHHHHHhCcC---cE--EEECCCc-H--HHHHHHHHh---CCCEEEEEECCChhHHHHHHHHH
Confidence 569999987777777776654 33 3445664 2 236666654 246 9999999999999986654
No 9
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=71.14 E-value=26 Score=26.50 Aligned_cols=50 Identities=20% Similarity=0.298 Sum_probs=34.8
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFG 257 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~G 257 (355)
|-++|.--..|+...-.++++|.+..|++|+..+++.+... .+...++.|
T Consensus 48 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~~~g 97 (126)
T 1dbw_A 48 NGVLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVP-MAVEAMKAG 97 (126)
T ss_dssp SEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEEEECTTCHH-HHHHHHHTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHH-HHHHHHHhC
Confidence 56777777788877778888888776788888887755432 333445555
No 10
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=70.10 E-value=9.8 Score=29.67 Aligned_cols=41 Identities=15% Similarity=0.328 Sum_probs=31.6
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAG 247 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~G 247 (355)
+-++|..-..|+...-.+++.|.+..|++||+++++.+...
T Consensus 50 ~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~ 90 (143)
T 3jte_A 50 IDVVITDMKMPKLSGMDILREIKKITPHMAVIILTGHGDLD 90 (143)
T ss_dssp CCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEEECTTCHH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEECCCCHH
Confidence 45677777788888888888888888888988888765443
No 11
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=69.83 E-value=4.8 Score=31.43 Aligned_cols=38 Identities=21% Similarity=0.242 Sum_probs=21.6
Q ss_pred EEEEEcCCCCChHHHHHHHHHHh--hCCCCCEEEEecCCh
Q 037694 208 SILITAKGYPDIATRFLLHRLNR--AFPDLPILALVDWNP 245 (355)
Q Consensus 208 ~IlITgkGyPd~~TR~fL~~L~~--~~~~lpv~~l~D~DP 245 (355)
-++|.--..|+...-.++++|.+ ..+++|++.+++.+.
T Consensus 52 dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~ 91 (140)
T 3grc_A 52 AAMTVDLNLPDQDGVSLIRALRRDSRTRDLAIVVVSANAR 91 (140)
T ss_dssp SEEEECSCCSSSCHHHHHHHHHTSGGGTTCEEEEECTTHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCcccCCCCEEEEecCCC
Confidence 34555555566666666666655 345666666665443
No 12
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=69.41 E-value=20 Score=27.73 Aligned_cols=48 Identities=19% Similarity=0.372 Sum_probs=33.5
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFG 257 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~G 257 (355)
++|++- - .|+...-.+++.|.+..|++|++++++.+... .+...++.|
T Consensus 50 dlvi~d-~-~~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~-~~~~~~~~g 97 (142)
T 2qxy_A 50 DLVFVD-V-FEGEESLNLIRRIREEFPDTKVAVLSAYVDKD-LIINSVKAG 97 (142)
T ss_dssp SEEEEE-C-TTTHHHHHHHHHHHHHCTTCEEEEEESCCCHH-HHHHHHHHT
T ss_pred CEEEEe-C-CCCCcHHHHHHHHHHHCCCCCEEEEECCCCHH-HHHHHHHCC
Confidence 344444 4 89988889999999888889999998866543 233344444
No 13
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=69.28 E-value=19 Score=27.39 Aligned_cols=41 Identities=17% Similarity=0.295 Sum_probs=24.9
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAG 247 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~G 247 (355)
+-++|..-..|+...-.+++.+.+..|++|++.+++.+...
T Consensus 52 ~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~t~~~~~~ 92 (130)
T 3eod_A 52 PDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMA 92 (130)
T ss_dssp CSEEEECCC-----CHHHHHHHHHTTCCCCEEEEECCCCHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCHH
Confidence 44666666677777777777777777778887777765444
No 14
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=68.75 E-value=11 Score=28.78 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=28.9
Q ss_pred CEEEEEcCCCCC-hHHHHHHHHHHhhCCCCCEEEEecCChh
Q 037694 207 PSILITAKGYPD-IATRFLLHRLNRAFPDLPILALVDWNPA 246 (355)
Q Consensus 207 ~~IlITgkGyPd-~~TR~fL~~L~~~~~~lpv~~l~D~DP~ 246 (355)
+-++|..-..|+ ...-.++++|.+..|++|++.+++.+..
T Consensus 51 ~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 91 (132)
T 2rdm_A 51 IDGVVTDIRFCQPPDGWQVARVAREIDPNMPIVYISGHAAL 91 (132)
T ss_dssp CCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEEEEESSCCT
T ss_pred CCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEEEEeCCccH
Confidence 446666667776 6777888888877778888888776543
No 15
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=67.75 E-value=9.1 Score=29.64 Aligned_cols=39 Identities=15% Similarity=0.328 Sum_probs=24.6
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCCh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNP 245 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP 245 (355)
|-++|..-..|+.....+++.|.+..|++|++++++.+.
T Consensus 52 ~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 90 (137)
T 3hdg_A 52 PDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIVISAFSE 90 (137)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEECCCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEecCcC
Confidence 345555666666666677777766666667666665543
No 16
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=67.39 E-value=17 Score=28.68 Aligned_cols=42 Identities=12% Similarity=0.192 Sum_probs=31.4
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHh--hCCCCCEEEEecCChhh
Q 037694 206 IPSILITAKGYPDIATRFLLHRLNR--AFPDLPILALVDWNPAG 247 (355)
Q Consensus 206 ~~~IlITgkGyPd~~TR~fL~~L~~--~~~~lpv~~l~D~DP~G 247 (355)
.+-++|.--..|+...-.+++.|.+ ..+++|++++++.+...
T Consensus 59 ~~dliilD~~l~~~~g~~~~~~lr~~~~~~~~pii~~t~~~~~~ 102 (152)
T 3heb_A 59 RAQLVLLDLNLPDMTGIDILKLVKENPHTRRSPVVILTTTDDQR 102 (152)
T ss_dssp CBEEEEECSBCSSSBHHHHHHHHHHSTTTTTSCEEEEESCCCHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHhcccccCCCEEEEecCCCHH
Confidence 3567777777888888888888877 56678888888765443
No 17
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=67.08 E-value=13 Score=28.99 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=28.6
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHh--hCCCCCEEEEecCChh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNR--AFPDLPILALVDWNPA 246 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~--~~~~lpv~~l~D~DP~ 246 (355)
+-++|..-..|+...-.+++.|.+ ..|++|++++++.+-.
T Consensus 52 ~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~ 93 (144)
T 3kht_A 52 YDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILTDNVSD 93 (144)
T ss_dssp CSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEETTCCH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEeCCCCH
Confidence 456666777787778888888877 4567888888775433
No 18
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=66.65 E-value=13 Score=29.40 Aligned_cols=40 Identities=13% Similarity=0.107 Sum_probs=28.1
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPA 246 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~ 246 (355)
+-++|..-..|+.....+++.|.+..|++||+++++.+-.
T Consensus 67 ~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~ 106 (150)
T 4e7p_A 67 VDIAILDVEMPVKTGLEVLEWIRSEKLETKVVVVTTFKRA 106 (150)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEEEeCCCCH
Confidence 4466666677777777777777777777787777765543
No 19
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=65.87 E-value=18 Score=28.68 Aligned_cols=39 Identities=13% Similarity=0.477 Sum_probs=29.5
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCCh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNP 245 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP 245 (355)
+.++|..-..|+...-.+++.|.+..|++||+++++.+.
T Consensus 52 ~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 90 (154)
T 2rjn_A 52 VQLVISDMRMPEMGGEVFLEQVAKSYPDIERVVISGYAD 90 (154)
T ss_dssp CSEEEEESSCSSSCHHHHHHHHHHHCTTSEEEEEECGGG
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 456666777787777788888888777888888877654
No 20
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=65.69 E-value=9.3 Score=29.13 Aligned_cols=39 Identities=13% Similarity=0.163 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhh--CCCCCEEEEecCChh
Q 037694 208 SILITAKGYPDIATRFLLHRLNRA--FPDLPILALVDWNPA 246 (355)
Q Consensus 208 ~IlITgkGyPd~~TR~fL~~L~~~--~~~lpv~~l~D~DP~ 246 (355)
-++|..-..|+...-.++++|.+. .+++|++.+++.+..
T Consensus 49 dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~ 89 (127)
T 3i42_A 49 DAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKN 89 (127)
T ss_dssp SEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcch
Confidence 344444555555555666666554 445666655554433
No 21
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=65.29 E-value=18 Score=28.57 Aligned_cols=39 Identities=21% Similarity=0.357 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCCh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNP 245 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP 245 (355)
+-++|.--..|+...-.++++|.+..|++||+++++.+.
T Consensus 59 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 97 (153)
T 3hv2_A 59 VDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDPD 97 (153)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEECCCCC
T ss_pred CCEEEEeCCCCcCcHHHHHHHHHhHCCCCeEEEEECCCC
Confidence 345555555666666667777766666677666665443
No 22
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=64.23 E-value=15 Score=28.24 Aligned_cols=39 Identities=21% Similarity=0.564 Sum_probs=27.0
Q ss_pred CEEEEEcCCCC-----ChHHHHHHHHHHhhCCCCCEEEEecCCh
Q 037694 207 PSILITAKGYP-----DIATRFLLHRLNRAFPDLPILALVDWNP 245 (355)
Q Consensus 207 ~~IlITgkGyP-----d~~TR~fL~~L~~~~~~lpv~~l~D~DP 245 (355)
+-++|..-..| +...-.+++.|.+..|++|++++++.+.
T Consensus 48 ~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~~~ii~ls~~~~ 91 (140)
T 2qr3_A 48 PEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRDLPVVLFTAYAD 91 (140)
T ss_dssp EEEEEEETTTTC-----CCHHHHHHHHHHHCTTCCEEEEEEGGG
T ss_pred CCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcCCCEEEEECCCC
Confidence 45666666666 6667778888887777888888877544
No 23
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=64.18 E-value=18 Score=28.18 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=31.6
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAG 247 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~G 247 (355)
+-++|.--..|+...-.++++|.+..|++||+.+++.+...
T Consensus 68 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~ 108 (146)
T 4dad_A 68 FDILMIDGAALDTAELAAIEKLSRLHPGLTCLLVTTDASSQ 108 (146)
T ss_dssp CSEEEEECTTCCHHHHHHHHHHHHHCTTCEEEEEESCCCHH
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHhCCCCcEEEEeCCCCHH
Confidence 45677777788888888888888888888888888765443
No 24
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=63.91 E-value=29 Score=27.40 Aligned_cols=50 Identities=18% Similarity=0.301 Sum_probs=35.2
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFG 257 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~G 257 (355)
+-++|..-..|+...-.+++.|....|++||+++++.+... .+...++.|
T Consensus 48 ~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ls~~~~~~-~~~~~~~~g 97 (155)
T 1qkk_A 48 AGIVISDIRMPGMDGLALFRKILALDPDLPMILVTGHGDIP-MAVQAIQDG 97 (155)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEEEECGGGHH-HHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEEECCCChH-HHHHHHhcC
Confidence 45666677778888888999998888889999998765433 233334444
No 25
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=61.98 E-value=10 Score=29.16 Aligned_cols=40 Identities=20% Similarity=0.207 Sum_probs=27.0
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPA 246 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~ 246 (355)
|-++|..-..|+...-.+++.+.+..|++|++.+++.+..
T Consensus 47 ~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 86 (134)
T 3f6c_A 47 PDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDH 86 (134)
T ss_dssp CSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEEEECC---
T ss_pred CCEEEEecCCCCCChHHHHHHHHhcCCCCeEEEEeCCCCh
Confidence 4466666667777777888888777777887777765443
No 26
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=59.68 E-value=19 Score=27.87 Aligned_cols=34 Identities=9% Similarity=0.107 Sum_probs=15.2
Q ss_pred EEEEcCCCCChHHHHHHHHHHh--hCCCCCEEEEec
Q 037694 209 ILITAKGYPDIATRFLLHRLNR--AFPDLPILALVD 242 (355)
Q Consensus 209 IlITgkGyPd~~TR~fL~~L~~--~~~~lpv~~l~D 242 (355)
++|..-..|+...-.+++.|.+ ..+++||+++++
T Consensus 54 lii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~ 89 (142)
T 3cg4_A 54 VVLLDIMMPGMDGWDTIRAILDNSLEQGIAIVMLTA 89 (142)
T ss_dssp EEEEESCCSSSCHHHHHHHHHHTTCCTTEEEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhcccCCCCEEEEEC
Confidence 4444444444444444444444 333444444444
No 27
>2cxh_A Probable BRIX-domain ribosomal biogenesis protein; 18S rRNA, IMP4, U3 snoRNP, ribosomal biogenesis binding, structural genomics, NPPSFA; 1.80A {Aeropyrum pernix} SCOP: c.51.1.2
Probab=59.49 E-value=6.3 Score=35.42 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=27.7
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhCCCCC
Q 037694 206 IPSILITAKGYPDIATRFLLHRLNRAFPDLP 236 (355)
Q Consensus 206 ~~~IlITgkGyPd~~TR~fL~~L~~~~~~lp 236 (355)
.|-+|||+-.-|+..||.|++-|...+|+.+
T Consensus 33 ~pKvLITTSr~pS~r~r~fakeL~~~lPns~ 63 (217)
T 2cxh_A 33 GYRILVTTSRRPSPRIRSFVKDLSATIPGAF 63 (217)
T ss_dssp CCEEEEEESSSCCHHHHHHHHHHHTTSTTEE
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHHHCCCCE
Confidence 3679999999999999999999999887764
No 28
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=58.87 E-value=16 Score=27.32 Aligned_cols=32 Identities=13% Similarity=0.368 Sum_probs=17.0
Q ss_pred EEEEcCCCC-ChHHHHHHHHHHhh--CCCCCEEEE
Q 037694 209 ILITAKGYP-DIATRFLLHRLNRA--FPDLPILAL 240 (355)
Q Consensus 209 IlITgkGyP-d~~TR~fL~~L~~~--~~~lpv~~l 240 (355)
++|..-..| +...-.+++.+.+. .+++|++++
T Consensus 52 lvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 52 LVVLAVDLSAGQNGYLICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp EEEEESBCGGGCBHHHHHHHHHHSTTTTTSCEEEE
T ss_pred EEEEeCCCCCCCCHHHHHHHHhcCccccCCCEEEE
Confidence 444444445 54555566666554 455666555
No 29
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=58.72 E-value=26 Score=26.62 Aligned_cols=38 Identities=13% Similarity=0.349 Sum_probs=22.8
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhh--CCCCCEEEEecCC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRA--FPDLPILALVDWN 244 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~--~~~lpv~~l~D~D 244 (355)
+-++|..-..|+...-.++++|.+. .+++||+.+++.+
T Consensus 48 ~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~ 87 (133)
T 3nhm_A 48 PDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYA 87 (133)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCC
Confidence 3455555566666666666666654 3466666666544
No 30
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=57.26 E-value=24 Score=26.48 Aligned_cols=39 Identities=10% Similarity=0.316 Sum_probs=26.0
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCCh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNP 245 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP 245 (355)
|-++|..-..|+...-.++++|.+..|++|+..++..+.
T Consensus 48 ~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (124)
T 1srr_A 48 PDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGE 86 (124)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEEEccCc
Confidence 345555666677666777777776666777777776544
No 31
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=57.22 E-value=20 Score=28.24 Aligned_cols=41 Identities=7% Similarity=0.103 Sum_probs=28.9
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAG 247 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~G 247 (355)
+-++|..-..|+.....+++.|.+..|++||+.+++.+...
T Consensus 62 ~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~ 102 (152)
T 3eul_A 62 PDVALLDYRMPGMDGAQVAAAVRSYELPTRVLLISAHDEPA 102 (152)
T ss_dssp CSEEEEETTCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCeEEEEEccCCHH
Confidence 34556666667777778888887777778887777765544
No 32
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=56.59 E-value=32 Score=27.02 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=27.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChh
Q 037694 208 SILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPA 246 (355)
Q Consensus 208 ~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~ 246 (355)
-++|..-..|+...-.+++.+....|++|++++++.+..
T Consensus 50 dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 88 (151)
T 3kcn_A 50 SVIMVDMRMPGMEGTEVIQKARLISPNSVYLMLTGNQDL 88 (151)
T ss_dssp SEEEEESCCSSSCHHHHHHHHHHHCSSCEEEEEECGGGH
T ss_pred CEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEEECCCCH
Confidence 466666667777777777777777777777777765433
No 33
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=55.83 E-value=26 Score=26.54 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhhC--CCCCEEEEecCChh
Q 037694 208 SILITAKGYPDIATRFLLHRLNRAF--PDLPILALVDWNPA 246 (355)
Q Consensus 208 ~IlITgkGyPd~~TR~fL~~L~~~~--~~lpv~~l~D~DP~ 246 (355)
-++|..-..|+...-.+++.|.+.. +..|++.+.+.++.
T Consensus 52 dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~~~~~~~ 92 (132)
T 3lte_A 52 AIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLDKA 92 (132)
T ss_dssp SEEEEESCBTTBCHHHHHHHHHTTTCSSCCEEEEECCSCSH
T ss_pred CEEEEecCCCCCCHHHHHHHHHhcCccCCCeEEEEeCCChH
Confidence 3555555566666666666666543 23344444443433
No 34
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=55.61 E-value=8.1 Score=29.98 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=28.5
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPA 246 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~ 246 (355)
|-++|.--..|+...-.+++.|.+..|++|++.++..+..
T Consensus 60 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 99 (135)
T 3snk_A 60 PGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSDELTS 99 (135)
T ss_dssp CSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEEESCCCH
T ss_pred CCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEEeCCCCH
Confidence 4466666667777777788888877778888888775543
No 35
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=55.42 E-value=35 Score=28.44 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=36.8
Q ss_pred CCEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcC
Q 037694 206 IPSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFG 257 (355)
Q Consensus 206 ~~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~G 257 (355)
.|-++|.--..|+...-.+++.+.+..|++||+.++..+.... +...++.|
T Consensus 48 ~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~-~~~a~~~G 98 (208)
T 1yio_A 48 QHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVFITAHGDIPM-TVRAMKAG 98 (208)
T ss_dssp SCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESCTTSCC-CHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHHH-HHHHHHCC
Confidence 3567777888888888889999988778899998887655332 22334455
No 36
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=55.42 E-value=27 Score=27.20 Aligned_cols=38 Identities=18% Similarity=0.478 Sum_probs=25.4
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWN 244 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~D 244 (355)
|-++|..-..|+...-.++++|.+..|++|+..++..+
T Consensus 50 ~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ii~ls~~~ 87 (141)
T 3cu5_A 50 PNVLLTDVRMPRMDGIELVDNILKLYPDCSVIFMSGYS 87 (141)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHCTTCEEEEECCST
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEEeCCC
Confidence 34666666667766677777777666677777776543
No 37
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=55.41 E-value=35 Score=27.12 Aligned_cols=39 Identities=8% Similarity=0.063 Sum_probs=26.3
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChh
Q 037694 208 SILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPA 246 (355)
Q Consensus 208 ~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~ 246 (355)
-++|.--..|+.....+++.|.+..|++||+++++.+..
T Consensus 85 dliilD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~ 123 (157)
T 3hzh_A 85 DIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKE 123 (157)
T ss_dssp CEEEECSSCSSSCHHHHHHHHHHHCTTCCEEEEESCCCH
T ss_pred CEEEEeccCCCccHHHHHHHHHhhCCCCcEEEEeccCcH
Confidence 456666666777777777777776677777777765433
No 38
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=55.22 E-value=24 Score=25.77 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=25.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhhC--CCCCEEEEecCChhh
Q 037694 208 SILITAKGYPDIATRFLLHRLNRAF--PDLPILALVDWNPAG 247 (355)
Q Consensus 208 ~IlITgkGyPd~~TR~fL~~L~~~~--~~lpv~~l~D~DP~G 247 (355)
-++|..-..|+.....+++.+.+.. +++|++.+++.+...
T Consensus 47 dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~ 88 (119)
T 2j48_A 47 IVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD 88 (119)
T ss_dssp SEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS
T ss_pred CEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch
Confidence 3445555667766777777777653 577777777654443
No 39
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=54.73 E-value=20 Score=27.54 Aligned_cols=39 Identities=13% Similarity=0.091 Sum_probs=24.7
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhh-CCCCCEEEEecCCh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRA-FPDLPILALVDWNP 245 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~-~~~lpv~~l~D~DP 245 (355)
+-++|.--..|+...-.+++.|.+. .+++|++.+++.+.
T Consensus 53 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ii~~s~~~~ 92 (136)
T 3hdv_A 53 IGLMITDLRMQPESGLDLIRTIRASERAALSIIVVSGDTD 92 (136)
T ss_dssp EEEEEECSCCSSSCHHHHHHHHHTSTTTTCEEEEEESSCC
T ss_pred CcEEEEeccCCCCCHHHHHHHHHhcCCCCCCEEEEeCCCC
Confidence 3466666666666666777777665 45667766665443
No 40
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=53.52 E-value=42 Score=25.34 Aligned_cols=40 Identities=15% Similarity=0.281 Sum_probs=28.9
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhC--CCCCEEEEecCChh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAF--PDLPILALVDWNPA 246 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~--~~lpv~~l~D~DP~ 246 (355)
+-++|..-..|+...-.+++.|.+.. +++|++++++.+..
T Consensus 56 ~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~ 97 (140)
T 1k68_A 56 PDLILLXLNLPKKDGREVLAEIKSDPTLKRIPVVVLSTSINE 97 (140)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHSTTGGGSCEEEEESCCCH
T ss_pred CcEEEEecCCCcccHHHHHHHHHcCcccccccEEEEecCCcH
Confidence 45666677777777778888887754 57888888876543
No 41
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=53.46 E-value=28 Score=25.83 Aligned_cols=50 Identities=28% Similarity=0.304 Sum_probs=33.6
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFG 257 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~G 257 (355)
|-++|.--..|+...-.+++.|.+..|++|+..+++.+.... ....++.|
T Consensus 45 ~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~-~~~~~~~g 94 (121)
T 2pl1_A 45 PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQD-KVEVLSAG 94 (121)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEEESCCCHHH-HHHHHHTT
T ss_pred CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEecCCCHHH-HHHHHHcC
Confidence 456666777788777788888887777888888887654332 23334444
No 42
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=53.40 E-value=29 Score=25.61 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWN 244 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~D 244 (355)
|-+++..-.-|+...-.++++|.+..|++|+..++..+
T Consensus 46 ~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 83 (116)
T 3a10_A 46 YDLVILDIEMPGISGLEVAGEIRKKKKDAKIILLTAYS 83 (116)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCG
T ss_pred CCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEEECCc
Confidence 34555555566666666777776665667777666543
No 43
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=53.15 E-value=16 Score=28.17 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=11.6
Q ss_pred cEEEEEehhhHHHHHHhc
Q 037694 183 RYIIVVEKHAIFQRLTED 200 (355)
Q Consensus 183 ~~VLvVEK~avF~rL~~~ 200 (355)
..||+||.+..+...+..
T Consensus 16 ~~ilivdd~~~~~~~l~~ 33 (138)
T 2b4a_A 16 FRVTLVEDEPSHATLIQY 33 (138)
T ss_dssp CEEEEECSCHHHHHHHHH
T ss_pred CeEEEECCCHHHHHHHHH
Confidence 347777777766655544
No 44
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=53.08 E-value=35 Score=28.89 Aligned_cols=38 Identities=11% Similarity=0.138 Sum_probs=22.9
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhh----CCCCCEEEEecCC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRA----FPDLPILALVDWN 244 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~----~~~lpv~~l~D~D 244 (355)
+-++|+--..|+.....++++|.+. .+++||+.++..+
T Consensus 120 ~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~ 161 (206)
T 3mm4_A 120 FDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHD 161 (206)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCC
Confidence 3455555566666666666666653 3566776666654
No 45
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=52.40 E-value=45 Score=25.33 Aligned_cols=40 Identities=20% Similarity=0.400 Sum_probs=27.2
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhh--CCCCCEEEEecCChh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRA--FPDLPILALVDWNPA 246 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~--~~~lpv~~l~D~DP~ 246 (355)
+-++|.--..|+.....++++|.+. .+++||+.++..+..
T Consensus 52 ~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~pii~~s~~~~~ 93 (129)
T 3h1g_A 52 TKVLITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGK 93 (129)
T ss_dssp CCEEEECSCCSSSCHHHHHHHHHTSTTCTTCCEEEEESCCSH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCeEEEEeCCCCh
Confidence 3466667777777777888887763 356788777765433
No 46
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=52.19 E-value=66 Score=24.02 Aligned_cols=40 Identities=15% Similarity=0.335 Sum_probs=28.5
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAG 247 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~G 247 (355)
|-++|.--..|+...-.+++++.+.. ++|++.++..+...
T Consensus 47 ~dlii~D~~~p~~~g~~~~~~lr~~~-~~~ii~~t~~~~~~ 86 (120)
T 3f6p_A 47 PDLILLDIMLPNKDGVEVCREVRKKY-DMPIIMLTAKDSEI 86 (120)
T ss_dssp CSEEEEETTSTTTHHHHHHHHHHTTC-CSCEEEEEESSCHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcC-CCCEEEEECCCChH
Confidence 45677777778888888888887654 67888777765543
No 47
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=51.59 E-value=58 Score=24.48 Aligned_cols=40 Identities=15% Similarity=0.346 Sum_probs=26.6
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhh--CCCCCEEEEecCChh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRA--FPDLPILALVDWNPA 246 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~--~~~lpv~~l~D~DP~ 246 (355)
|-++|.--..|+...-.++++|.+. .+++|++.++..+..
T Consensus 47 ~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~ 88 (122)
T 3gl9_A 47 PDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGE 88 (122)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEEEEESCCSH
T ss_pred CCEEEEeccCCCCcHHHHHHHHHhcccccCCCEEEEecCCch
Confidence 4566666777777777777777653 356777777765433
No 48
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=51.02 E-value=27 Score=26.80 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=26.4
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCCh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNP 245 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP 245 (355)
|-++|.--..|+...-.+++.|.+..|++|++.+++.+.
T Consensus 48 ~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~ 86 (132)
T 3crn_A 48 FNLALFXIKLPDMEGTELLEKAHKLRPGMKKIMVTGYAS 86 (132)
T ss_dssp CSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEEEESCCC
T ss_pred CCEEEEecCCCCCchHHHHHHHHhhCCCCcEEEEecccc
Confidence 445666666677667777777776666777777776543
No 49
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=50.52 E-value=37 Score=26.21 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=8.2
Q ss_pred EEEEEehhhHHHHHHh
Q 037694 184 YIIVVEKHAIFQRLTE 199 (355)
Q Consensus 184 ~VLvVEK~avF~rL~~ 199 (355)
.||+||.+..+...++
T Consensus 7 ~ilivdd~~~~~~~l~ 22 (140)
T 3h5i_A 7 KILIVEDSKFQAKTIA 22 (140)
T ss_dssp EEEEECSCHHHHHHHH
T ss_pred EEEEEeCCHHHHHHHH
Confidence 3555555555544443
No 50
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=50.46 E-value=35 Score=25.94 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCC
Q 037694 208 SILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWN 244 (355)
Q Consensus 208 ~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~D 244 (355)
-++|..-..|+...-.+++.|.+..|.+|++.++..+
T Consensus 49 dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~ 85 (136)
T 1mvo_A 49 DLIVLDVMLPKLDGIEVCKQLRQQKLMFPILMLTAKD 85 (136)
T ss_dssp SEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECTT
T ss_pred CEEEEecCCCCCCHHHHHHHHHcCCCCCCEEEEECCC
Confidence 3445555556655566666666655566666666543
No 51
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=49.91 E-value=35 Score=25.57 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=27.9
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhC--CCCCEEEEecCChh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAF--PDLPILALVDWNPA 246 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~--~~lpv~~l~D~DP~ 246 (355)
|-++|..-..|+...-.++++|.+.. |++|+..+++.+..
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~ 88 (127)
T 2jba_A 47 PDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEE 88 (127)
T ss_dssp CSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEEEEEETTHH
T ss_pred CCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEEEEeCCCCH
Confidence 45666666677777777888887643 67888888776543
No 52
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=49.24 E-value=58 Score=25.65 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=23.9
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhh--CCCCCEEEEecCCh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRA--FPDLPILALVDWNP 245 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~--~~~lpv~~l~D~DP 245 (355)
+-++|.--..|+...-.+++.|.+. .+++|++++++.+.
T Consensus 52 ~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s~~~~ 92 (154)
T 3gt7_A 52 PDLIISDVLMPEMDGYALCRWLKGQPDLRTIPVILLTILSD 92 (154)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEECCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCEEEEECCCC
Confidence 3455556666666666777777654 25677777765443
No 53
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=48.33 E-value=32 Score=28.39 Aligned_cols=50 Identities=18% Similarity=0.136 Sum_probs=36.3
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFG 257 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~G 257 (355)
|-++|+--..|+...-.+++.+.+..|++||+.++..+.... +...++.|
T Consensus 52 ~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~lt~~~~~~~-~~~a~~~G 101 (184)
T 3rqi_A 52 FEFITVXLHLGNDSGLSLIAPLCDLQPDARILVLTGYASIAT-AVQAVKDG 101 (184)
T ss_dssp CSEEEECSEETTEESHHHHHHHHHHCTTCEEEEEESSCCHHH-HHHHHHHT
T ss_pred CCEEEEeccCCCccHHHHHHHHHhcCCCCCEEEEeCCCCHHH-HHHHHHhC
Confidence 557777777888888888888888888899988887664443 33445555
No 54
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=47.47 E-value=55 Score=24.99 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHh----hCCCCCEEEEecCCh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNR----AFPDLPILALVDWNP 245 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~----~~~~lpv~~l~D~DP 245 (355)
+-++|.--..|+...-.+++.|.+ ..+++|++.+++.+.
T Consensus 61 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~~~ii~~t~~~~ 103 (146)
T 3ilh_A 61 PSIICIDINMPGINGWELIDLFKQHFQPMKNKSIVCLLSSSLD 103 (146)
T ss_dssp CSEEEEESSCSSSCHHHHHHHHHHHCGGGTTTCEEEEECSSCC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHHhhhhccCCCeEEEEeCCCC
Confidence 345555555666666666666665 345566666655443
No 55
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=47.06 E-value=35 Score=26.25 Aligned_cols=39 Identities=15% Similarity=0.292 Sum_probs=25.4
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhC--CCCCEEEEecCCh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAF--PDLPILALVDWNP 245 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~--~~lpv~~l~D~DP 245 (355)
+-++|..-..|+...-.+++.|.+.. +++|++++++.+.
T Consensus 60 ~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~~ 100 (143)
T 2qvg_A 60 PKLILLDINIPKMNGIEFLKELRDDSSFTDIEVFVLTAAYT 100 (143)
T ss_dssp CSEEEEETTCTTSCHHHHHHHHTTSGGGTTCEEEEEESCCC
T ss_pred CCEEEEecCCCCCCHHHHHHHHHcCccccCCcEEEEeCCCC
Confidence 44555566667666677777776643 5677777776554
No 56
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=46.15 E-value=26 Score=27.03 Aligned_cols=17 Identities=18% Similarity=0.245 Sum_probs=8.8
Q ss_pred CCCCHHHHH-HHHHhhhh
Q 037694 291 LPLKPRDLQ-IARSLMSS 307 (355)
Q Consensus 291 ~pLt~~D~~-~l~~ll~~ 307 (355)
.|++..++. .++.+++.
T Consensus 105 KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 105 KPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 356666665 33444443
No 57
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=44.97 E-value=38 Score=28.56 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=38.7
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcCC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFGS 258 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~GS 258 (355)
|-++|.--..|+...-.+++.|.+..|++||+.++..+... .+...+..|.
T Consensus 47 ~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ls~~~~~~-~~~~~~~~ga 97 (225)
T 1kgs_A 47 FDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVE-YRVKGLNMGA 97 (225)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCHHH-HHHHTCCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEeCCCCHH-HHHHHHhCCc
Confidence 45777777889888889999999888899999999876543 3344555554
No 58
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=44.79 E-value=99 Score=23.52 Aligned_cols=40 Identities=10% Similarity=0.272 Sum_probs=27.7
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPA 246 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~ 246 (355)
|-++|..-..|+..--.+++.|.+..|++|++.++..+..
T Consensus 45 ~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~s~~~~~ 84 (139)
T 2jk1_A 45 VQVIICDQRMPGRTGVDFLTEVRERWPETVRIIITGYTDS 84 (139)
T ss_dssp EEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEEESCTTC
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEEeCCCCh
Confidence 4566666677777777777777776667777777765543
No 59
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=42.86 E-value=57 Score=24.86 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=25.3
Q ss_pred CCChHHHHHHHHHHhhCC-CCCEEEEecCChhhHHHHHHhhcC
Q 037694 216 YPDIATRFLLHRLNRAFP-DLPILALVDWNPAGLAILCTFKFG 257 (355)
Q Consensus 216 yPd~~TR~fL~~L~~~~~-~lpv~~l~D~DP~Gi~I~~~yk~G 257 (355)
.|+...-.+++.|.+. + ++||+++++.+... .+...++.|
T Consensus 68 ~~~~~g~~~~~~l~~~-~~~~~ii~ls~~~~~~-~~~~~~~~g 108 (137)
T 2pln_A 68 VSDKNALSFVSRIKEK-HSSIVVLVSSDNPTSE-EEVHAFEQG 108 (137)
T ss_dssp ECSTTHHHHHHHHHHH-STTSEEEEEESSCCHH-HHHHHHHTT
T ss_pred EcCccHHHHHHHHHhc-CCCccEEEEeCCCCHH-HHHHHHHcC
Confidence 5666677788888776 7 78888887755433 233334444
No 60
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=42.75 E-value=31 Score=26.55 Aligned_cols=39 Identities=13% Similarity=0.367 Sum_probs=26.4
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhC--CCCCEEEEecCCh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAF--PDLPILALVDWNP 245 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~--~~lpv~~l~D~DP 245 (355)
+-++|..-..|+...-.+++.|.+.. +++|++++++.+.
T Consensus 63 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~t~~~~ 103 (149)
T 1k66_A 63 PAVILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSN 103 (149)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHTTSTTGGGSCEEEEESCCC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhCcccCCCeEEEEeCCCC
Confidence 45666666677777777777777654 5677777776544
No 61
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=42.27 E-value=69 Score=26.85 Aligned_cols=51 Identities=14% Similarity=0.196 Sum_probs=38.7
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcCC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFGS 258 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~GS 258 (355)
|-++|.--..|+...-.+++.+.+..|++|++.++..+... .+...+..|.
T Consensus 44 ~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~-~~~~~~~~ga 94 (220)
T 1p2f_A 44 FHVVVLDVMLPDYSGYEICRMIKETRPETWVILLTLLSDDE-SVLKGFEAGA 94 (220)
T ss_dssp CSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEEESCCSHH-HHHHHHHHTC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEEcCCCHH-HHHHHHHcCC
Confidence 45777777889988889999999888899999998866543 3344556664
No 62
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=41.86 E-value=44 Score=28.29 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=32.6
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPA 246 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~ 246 (355)
|-++|.--..|+..--.+++.+.+..|++||+.++..+..
T Consensus 52 ~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~lt~~~~~ 91 (233)
T 1ys7_A 52 PDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSV 91 (233)
T ss_dssp CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECCCTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEEcCCCH
Confidence 4567777788988888999999987789999999876543
No 63
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=41.79 E-value=20 Score=26.27 Aligned_cols=50 Identities=6% Similarity=0.018 Sum_probs=34.3
Q ss_pred cCCCccccceeccccCCCccccCchHHHHHHHHHHHHhhccCccccCceecCC
Q 037694 85 QEKRVTQRELFYKLLCDSPEYFTSQLQVNRTIQDVIALLHCSRFSLGIVASSR 137 (355)
Q Consensus 85 ~~~~~T~RdiYY~~~~~~~~lF~~Q~~~d~~i~di~~~l~~~R~~L~I~a~~K 137 (355)
+|....+.|+||.+- .-.-|.+-.++.+.+.+-... +++.+++.-.+.+|
T Consensus 19 ~G~s~gk~DvyY~sP--~Gkk~RSk~ev~~yL~~~~~~-~l~~~~FdF~~p~~ 68 (69)
T 3vxv_A 19 SGKTAGKFDVYFISP--QGLKFRSKRSLANYLLKNGET-FLKPEDFNFTVLPK 68 (69)
T ss_dssp SSTTTTCEEEEEECT--TSCEECSHHHHHHHHHHHCCC-CCCGGGSCCCCCCC
T ss_pred cCCCCCcceEEEEcC--CCCEeeCHHHHHHHHHhCCCC-CCCHHHcceeCCCC
Confidence 355567889999852 447899999999998886432 45666665544444
No 64
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=41.13 E-value=1.1e+02 Score=22.73 Aligned_cols=50 Identities=20% Similarity=0.308 Sum_probs=31.1
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHh--hCCCCCEEEEecCChhhHHHHHHhhcC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNR--AFPDLPILALVDWNPAGLAILCTFKFG 257 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~--~~~~lpv~~l~D~DP~Gi~I~~~yk~G 257 (355)
+-++|..-..|+...-.++++|.+ ..+++|+..+++.+... .+...++.|
T Consensus 50 ~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~~ii~~s~~~~~~-~~~~~~~~g 101 (128)
T 1jbe_A 50 YGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKE-NIIAAAQAG 101 (128)
T ss_dssp CCEEEEESCCSSSCHHHHHHHHHC--CCTTCCEEEEESSCCHH-HHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCcEEEEecCccHH-HHHHHHHhC
Confidence 345666777777777778888876 34577887777655433 233344444
No 65
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=41.00 E-value=50 Score=24.66 Aligned_cols=48 Identities=19% Similarity=0.160 Sum_probs=27.6
Q ss_pred HHHHhccccCCCCE-EEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChh
Q 037694 195 QRLTEDFVFNQIPS-ILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPA 246 (355)
Q Consensus 195 ~rL~~~~~~~~~~~-IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~ 246 (355)
.+.+++......+| .+|||||-. .-|+.++..-...| -|..|.++.|.
T Consensus 22 ~~fl~~a~~~g~~~v~IIHGkG~G--vLr~~V~~~L~~~~--~V~~f~~a~~~ 70 (83)
T 2zqe_A 22 DQALEEARALGLSTLRLLHGKGTG--ALRQAIREALRRDK--RVESFADAPPG 70 (83)
T ss_dssp HHHHHHHHHTTCSEEEEECCSTTS--HHHHHHHHHHHHCT--TEEEEEECCTT
T ss_pred HHHHHHHHHCCCCEEEEEECCCch--HHHHHHHHHHhcCC--ceeEEEEcCcc
Confidence 34444444444555 788999985 34444444333333 47778888764
No 66
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=40.04 E-value=55 Score=25.21 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=27.3
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCCh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNP 245 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP 245 (355)
+-++|.--..|+...-.+++.|.+..|.+|++.++..+.
T Consensus 49 ~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~ls~~~~ 87 (137)
T 3cfy_A 49 PQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIATAHGS 87 (137)
T ss_dssp CSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEEESSCC
T ss_pred CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEEEecCc
Confidence 346666666777777777888877666778877776544
No 67
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=39.58 E-value=1e+02 Score=22.72 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=24.5
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCCh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNP 245 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP 245 (355)
|-++|..-..|+...-.+++.|.+. |++|+..++..+.
T Consensus 48 ~dlvi~D~~l~~~~g~~~~~~l~~~-~~~~ii~~s~~~~ 85 (123)
T 1xhf_A 48 INLVIMDINLPGKNGLLLARELREQ-ANVALMFLTGRDN 85 (123)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHH-CCCEEEEEESCCS
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhC-CCCcEEEEECCCC
Confidence 3455556666766666777777665 5677777766544
No 68
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=38.40 E-value=82 Score=24.11 Aligned_cols=37 Identities=30% Similarity=0.318 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhh--CCCCCEEEEecCC
Q 037694 208 SILITAKGYPDIATRFLLHRLNRA--FPDLPILALVDWN 244 (355)
Q Consensus 208 ~IlITgkGyPd~~TR~fL~~L~~~--~~~lpv~~l~D~D 244 (355)
-++|.--..|+...-.+++.|.+. .+++|++.++..+
T Consensus 50 dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pii~~t~~~ 88 (136)
T 3t6k_A 50 DALICDVLLPGIDGYTLCKRVRQHPLTKTLPILMLTAQG 88 (136)
T ss_dssp SEEEEESCCSSSCHHHHHHHHHHSGGGTTCCEEEEECTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcCCCcCCccEEEEecCC
Confidence 355555555666666666666542 2356666665543
No 69
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=36.66 E-value=1.3e+02 Score=23.31 Aligned_cols=50 Identities=12% Similarity=0.410 Sum_probs=32.1
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhh--CCCCCEEEEecCChhhHHHHHHhhcC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRA--FPDLPILALVDWNPAGLAILCTFKFG 257 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~--~~~lpv~~l~D~DP~Gi~I~~~yk~G 257 (355)
|-++|.--..|+..--.++++|.+. .+++|+++++..+... .+...++.|
T Consensus 62 ~dlillD~~lp~~~g~~l~~~l~~~~~~~~~piiils~~~~~~-~~~~~~~~g 113 (149)
T 1i3c_A 62 PNLILLDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSHNED-DVIASYELH 113 (149)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHHHCTTTTTSCEEEEESCCCHH-HHHHHHHTT
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhCcCcCCCeEEEEECCCChH-HHHHHHHcC
Confidence 4566777777777777788888764 2577888887754332 234445555
No 70
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=36.39 E-value=96 Score=22.63 Aligned_cols=39 Identities=21% Similarity=0.447 Sum_probs=24.9
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPA 246 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~ 246 (355)
|-+++..-..|+...-.+++++.. .|.+|+..++..+..
T Consensus 46 ~dlvi~D~~l~~~~g~~~~~~l~~-~~~~~ii~~s~~~~~ 84 (121)
T 1zh2_A 46 PDLIILDLGLPDGDGIEFIRDLRQ-WSAVPVIVLSARSEE 84 (121)
T ss_dssp CSEEEEESEETTEEHHHHHHHHHT-TCCCCEEEEESCCSH
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHh-CCCCcEEEEECCCCH
Confidence 345555666676666677777763 467777777765543
No 71
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=36.11 E-value=69 Score=27.71 Aligned_cols=51 Identities=22% Similarity=0.247 Sum_probs=39.2
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcCC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFGS 258 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~GS 258 (355)
|-++|.--..|+...-.+++.|.+..|++||+.++..+-... +...+..|.
T Consensus 68 ~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~-~~~~~~~Ga 118 (250)
T 3r0j_A 68 PDAVILDVXMPGMDGFGVLRRLRADGIDAPALFLTARDSLQD-KIAGLTLGG 118 (250)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEECSTTHHH-HHHHHTSTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEEEECCCCHHH-HHHHHHcCC
Confidence 457777788899999999999998888999999998665443 344566664
No 72
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=35.52 E-value=1e+02 Score=26.87 Aligned_cols=50 Identities=22% Similarity=0.438 Sum_probs=38.6
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcCC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFGS 258 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~GS 258 (355)
|-++|.--..|+...-.+++.|.+ .|++||++++..+.... +...++.|.
T Consensus 82 ~DlvllD~~lp~~~G~~l~~~lr~-~~~~~iI~lt~~~~~~~-~~~a~~~Ga 131 (249)
T 3q9s_A 82 PDLILLDLGLPDFDGGDVVQRLRK-NSALPIIVLTARDTVEE-KVRLLGLGA 131 (249)
T ss_dssp CSEEEEECCSCHHHHHHHHHHHHT-TCCCCEEEEESCCSHHH-HHHHHHHTC
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHc-CCCCCEEEEECCCCHHH-HHHHHHCCC
Confidence 557777888899999999999987 67999999998765443 445566664
No 73
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=35.22 E-value=85 Score=25.02 Aligned_cols=50 Identities=14% Similarity=0.289 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHH-HHHHhhcC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLA-ILCTFKFG 257 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~-I~~~yk~G 257 (355)
+-++|.--..|+...-.+++.|.+..| .|++.++..+..+.. +...++.|
T Consensus 72 ~dlvilD~~l~~~~g~~l~~~lr~~~~-~~ii~~s~~~~~~~~~~~~~~~~g 122 (164)
T 3t8y_A 72 PDVITMDIEMPNLNGIEALKLIMKKAP-TRVIMVSSLTEEGAAITIEALRNG 122 (164)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHHSC-CEEEEEESSCCTTCHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCC-ceEEEEecCCccchHHHHHHHHcC
Confidence 345566666677777777777776665 677777765544432 33344444
No 74
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=34.64 E-value=1.1e+02 Score=22.29 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=29.9
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFG 257 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~G 257 (355)
|-+++..-..|+..--.+++++.+. +.+|+..++..+... .+...++.|
T Consensus 46 ~dlvl~D~~l~~~~g~~~~~~l~~~-~~~~ii~~s~~~~~~-~~~~~~~~g 94 (120)
T 2a9o_A 46 PDIIILDLMLPEIDGLEVAKTIRKT-SSVPILMLSAKDSEF-DKVIGLELG 94 (120)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHH-CCCCEEEEESCCSHH-HHHHHHHHT
T ss_pred CCEEEEeccCCCCCHHHHHHHHHhC-CCCCEEEEecCCchH-HHHHHHhCC
Confidence 3455666667776667777777764 578887777655433 233344444
No 75
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=33.36 E-value=1.5e+02 Score=22.52 Aligned_cols=50 Identities=24% Similarity=0.399 Sum_probs=34.5
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHh--hCCCCCEEEEecCChhhHHHHHHhhcC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNR--AFPDLPILALVDWNPAGLAILCTFKFG 257 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~--~~~~lpv~~l~D~DP~Gi~I~~~yk~G 257 (355)
+-++|..-..|+...-.+++.|.+ ..+++||+++++.+.... +...++.|
T Consensus 53 ~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~pii~ls~~~~~~~-~~~~~~~g 104 (147)
T 2zay_A 53 PHLIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKE-EAQLLDMG 104 (147)
T ss_dssp CSEEEEESCCSSSCHHHHHHHHHTSTTTTTSCEEEEESSCCHHH-HHHHHHHT
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHcCcccCCCCEEEEeCCCCHHH-HHHHHhCC
Confidence 446666677788888889999987 567899999988665432 33334444
No 76
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=32.65 E-value=1.6e+02 Score=22.13 Aligned_cols=41 Identities=12% Similarity=0.199 Sum_probs=28.4
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHh--hCCCCCEEEEecCChhh
Q 037694 207 PSILITAKGYPDIATRFLLHRLNR--AFPDLPILALVDWNPAG 247 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~--~~~~lpv~~l~D~DP~G 247 (355)
+-++|..-..|+...-.+++.|.+ ..+++||+++++.+...
T Consensus 55 ~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~ 97 (143)
T 3cnb_A 55 PDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDD 97 (143)
T ss_dssp CSEEEEETTCTTSCHHHHHHHHHTSTTTTTSEEEEEESSCCHH
T ss_pred CCEEEEecccCCCcHHHHHHHHHhCccccCCcEEEEeCCCCHH
Confidence 345666666777777788888877 45678888887765543
No 77
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=32.34 E-value=86 Score=22.99 Aligned_cols=50 Identities=14% Similarity=0.248 Sum_probs=35.3
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFG 257 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~G 257 (355)
|-+++.--..|+...-.++++|.+..|++|+..++..+... .+...++.|
T Consensus 48 ~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~-~~~~~~~~g 97 (120)
T 1tmy_A 48 PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQA-MVIEAIKAG 97 (120)
T ss_dssp CSEEEEECSCGGGCHHHHHHHHHHHCTTCCEEEEECTTCHH-HHHHHHHTT
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEEEEeCCCCHH-HHHHHHHhC
Confidence 44666677778888888899888877889998888765543 233444554
No 78
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=32.33 E-value=2e+02 Score=23.44 Aligned_cols=72 Identities=10% Similarity=0.068 Sum_probs=43.8
Q ss_pred EEEEEehhhHHHHHHhc-----ccc-----------CCCCEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhh
Q 037694 184 YIIVVEKHAIFQRLTED-----FVF-----------NQIPSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAG 247 (355)
Q Consensus 184 ~VLvVEK~avF~rL~~~-----~~~-----------~~~~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~G 247 (355)
.|||||.+..+...+.. ++. ...|-++|+--..|+...- +++.+....|++||+.++..+...
T Consensus 14 ~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii~lt~~~~~~ 92 (196)
T 1qo0_D 14 QVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAFDVPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLVALVEYESPA 92 (196)
T ss_dssp EEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSCSSCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEEEEECCCSHH
T ss_pred eEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhCCCCCCEEEEeCCCCccchH-HHHHHhccCCCCCEEEEEcCCChH
Confidence 48888887765544332 211 1124567777777887654 666666543688998888765544
Q ss_pred HHHHHHhhcC
Q 037694 248 LAILCTFKFG 257 (355)
Q Consensus 248 i~I~~~yk~G 257 (355)
.+...++.|
T Consensus 93 -~~~~a~~~g 101 (196)
T 1qo0_D 93 -VLSQIIELE 101 (196)
T ss_dssp -HHHHHHHHT
T ss_pred -HHHHHHHcC
Confidence 344455555
No 79
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=32.07 E-value=1.1e+02 Score=25.69 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=30.9
Q ss_pred CCChHHHHHHHHHHhhCC-CCCEEEEecCChhhHHHHHHhhcCC
Q 037694 216 YPDIATRFLLHRLNRAFP-DLPILALVDWNPAGLAILCTFKFGS 258 (355)
Q Consensus 216 yPd~~TR~fL~~L~~~~~-~lpv~~l~D~DP~Gi~I~~~yk~GS 258 (355)
.|+...-.+++.|.+. | ++||+.++..+... .+...+..|.
T Consensus 50 lp~~~g~~~~~~lr~~-~~~~~ii~lt~~~~~~-~~~~~~~~Ga 91 (223)
T 2hqr_A 50 VSDKNALSFVSRIKEK-HSSIVVLVSSDNPTSE-EEVHAFEQGA 91 (223)
T ss_dssp ECCTTHHHHHHHHHHH-CTTSEEEEEESSCCHH-HHHHHHHHTC
T ss_pred eCCCCHHHHHHHHHhC-CCCCcEEEEECCCCHH-HHHHHHHcCC
Confidence 7888888999999888 7 89999999876544 3344556664
No 80
>1hji_B NUN-protein; bacteriophage HK022, termination, peptide-RNA-complex, peptide-RNA-recognition; NMR {Bacteriophage HK022} SCOP: j.9.5.1
Probab=31.07 E-value=76 Score=18.21 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=16.1
Q ss_pred CCHHHHHHHHHhhhhhhhhHHHHHHHHHHHHcC
Q 037694 293 LKPRDLQIARSLMSSEILQENYKEELSLMVHNG 325 (355)
Q Consensus 293 Lt~~D~~~l~~ll~~~~~~~~w~~el~~ml~~~ 325 (355)
||.+|+.++. .|.+-|-.-|++|
T Consensus 4 ltsrdrrria----------rwekriayalkng 26 (26)
T 1hji_B 4 LTSRDRRRIA----------RWEKRIAYALKNG 26 (26)
T ss_dssp SCHHHHHHHH----------HHHHHHHHHHHCC
T ss_pred cchhhHHHHH----------HHHHHHHHHHhcC
Confidence 7889988762 4777776666654
No 81
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=30.46 E-value=1.9e+02 Score=22.30 Aligned_cols=50 Identities=16% Similarity=0.161 Sum_probs=35.9
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFG 257 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~G 257 (355)
+-++|..-..|+...-.+++.|.+..|++|++++++.+.... +...++.|
T Consensus 52 ~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~~-~~~~~~~g 101 (153)
T 3cz5_A 52 PDIVVMDLTLPGPGGIEATRHIRQWDGAARILIFTMHQGSAF-ALKAFEAG 101 (153)
T ss_dssp CSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEEESCCSHHH-HHHHHHTT
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHhCCCCeEEEEECCCCHHH-HHHHHHCC
Confidence 456677777788888889999988888899999887655432 33344444
No 82
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=29.76 E-value=57 Score=24.86 Aligned_cols=50 Identities=10% Similarity=0.239 Sum_probs=36.2
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFG 257 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~G 257 (355)
|-++|..-..|+...-.++++|.+..|++|+..++..+... .+...++.|
T Consensus 50 ~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~-~~~~~~~~g 99 (133)
T 3b2n_A 50 PNVVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPG-YFEKAVVND 99 (133)
T ss_dssp CSEEEECSSCSSSCHHHHHHHHHHTTCSCEEEEEESCCCHH-HHHHHHHTT
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHCCCCcEEEEecCCCHH-HHHHHHHcC
Confidence 45777777888888888999998877889999888765543 233444554
No 83
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=29.01 E-value=84 Score=24.41 Aligned_cols=69 Identities=16% Similarity=0.083 Sum_probs=34.3
Q ss_pred EEEEehhhHHHHHHhccccCCCCEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcC
Q 037694 185 IIVVEKHAIFQRLTEDFVFNQIPSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFG 257 (355)
Q Consensus 185 VLvVEK~avF~rL~~~~~~~~~~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~G 257 (355)
|..+....-...+++.+ ..+.++|..-..|+...-.+++.+.+..|++||+.+++.+... .+...++.|
T Consensus 32 v~~~~~~~~a~~~l~~~---~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ls~~~~~~-~~~~~~~~g 100 (154)
T 2qsj_A 32 VEGAETVSDALAFLEAD---NTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGETDHE-LIRAALEAG 100 (154)
T ss_dssp EEEESSHHHHHHHHHTT---CCCSEEEECC------CHHHHHHHHHHCTTSEEEEC-----CH-HHHHHHHTT
T ss_pred EEEecCHHHHHHHHhcc---CCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeEEEEeCCCCHH-HHHHHHHcc
Confidence 44444443333443331 2345677777778877788899998888889998888765432 233344444
No 84
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=28.40 E-value=1.5e+02 Score=22.53 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=19.8
Q ss_pred EEEEEcCCCCChHHHHHHHHHHhh--CCCCCEEEEecCC
Q 037694 208 SILITAKGYPDIATRFLLHRLNRA--FPDLPILALVDWN 244 (355)
Q Consensus 208 ~IlITgkGyPd~~TR~fL~~L~~~--~~~lpv~~l~D~D 244 (355)
-++|.--.-|+...-.+++.|.+. .+++||+.++..+
T Consensus 49 dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~ls~~~ 87 (138)
T 3c3m_A 49 DLVLLDIMMEPMDGWETLERIKTDPATRDIPVLMLTAKP 87 (138)
T ss_dssp SEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEEEEESSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEEEEECCC
Confidence 355555555655555666666543 2356666665543
No 85
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=27.87 E-value=1.3e+02 Score=24.66 Aligned_cols=51 Identities=18% Similarity=0.229 Sum_probs=28.7
Q ss_pred HHHHHhccccCCCCE-EEEEcCCCCCh----HHHHHHHHHHhhCCCCCEEEEecCChh
Q 037694 194 FQRLTEDFVFNQIPS-ILITAKGYPDI----ATRFLLHRLNRAFPDLPILALVDWNPA 246 (355)
Q Consensus 194 F~rL~~~~~~~~~~~-IlITgkGyPd~----~TR~fL~~L~~~~~~lpv~~l~D~DP~ 246 (355)
..+++.+.......| .+|||||...- .-|..++..-...| -|..|.++.|.
T Consensus 64 L~~fL~~a~~~g~r~V~IIHGKG~gs~~~~~vLk~~V~~wL~~~~--~V~~f~~a~~~ 119 (137)
T 3qd7_X 64 VFSFIQQALADGLRNVLIIHGKGRDDKSHANIVRSYVARWLTEFD--DVQAYCTALPH 119 (137)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCCSSTTSHHHHHHHHHHHHHHTST--TEEEEEECCGG
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCchHHHHHHHHHHHhcCC--ceeEEeecCcc
Confidence 344444444444555 68899998643 23333333333333 47788887764
No 86
>1w94_A MIL, probable BRIX-domain ribosomal biogenesis protein; archaeal IMP4-BRIX domain, IMP4 domain; 2.0A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.2
Probab=27.19 E-value=31 Score=29.10 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.8
Q ss_pred EEEEcCCCCChHHHHHHHHHHhhCCCCCE
Q 037694 209 ILITAKGYPDIATRFLLHRLNRAFPDLPI 237 (355)
Q Consensus 209 IlITgkGyPd~~TR~fL~~L~~~~~~lpv 237 (355)
++||+..-|+..+++|.+.|...+ +.|.
T Consensus 2 ilITTSr~Ps~~l~~fakeLa~~l-n~~~ 29 (156)
T 1w94_A 2 MLLTTSRKPSQRTRSFSQRLSRIM-GWRY 29 (156)
T ss_dssp CEEEECSSCCHHHHHHHHHHHHHH-TCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh-CCEE
Confidence 689999999999999999999887 6654
No 87
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=26.90 E-value=86 Score=23.08 Aligned_cols=14 Identities=21% Similarity=0.498 Sum_probs=6.7
Q ss_pred EEEEehhhHHHHHH
Q 037694 185 IIVVEKHAIFQRLT 198 (355)
Q Consensus 185 VLvVEK~avF~rL~ 198 (355)
||+||.+..+...+
T Consensus 4 ilivdd~~~~~~~l 17 (124)
T 1mb3_A 4 VLIVEDNELNMKLF 17 (124)
T ss_dssp EEEECSCHHHHHHH
T ss_pred EEEEcCCHHHHHHH
Confidence 45555554444433
No 88
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=26.08 E-value=1e+02 Score=22.95 Aligned_cols=35 Identities=14% Similarity=0.184 Sum_probs=16.0
Q ss_pred EEEEcCCCCChHHHHHHHHHHhh--CCCCCEEEEecC
Q 037694 209 ILITAKGYPDIATRFLLHRLNRA--FPDLPILALVDW 243 (355)
Q Consensus 209 IlITgkGyPd~~TR~fL~~L~~~--~~~lpv~~l~D~ 243 (355)
+++.--..|+...-.+++.|.+. .|++|+..++..
T Consensus 54 lvl~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 54 LVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp EEEECSSSCSSCHHHHHHHHTTCTTSTTCEEEECCSC
T ss_pred EEEEeCCCCCCCHHHHHHHHhcCccccCCCEEEEeCC
Confidence 34444444544444555555432 234555544443
No 89
>3rst_A Signal peptide peptidase SPPA; alpha/beta protein fold, signal peptide digestion, bacterial membrane, hydrolase; 2.37A {Bacillus subtilis}
Probab=25.93 E-value=73 Score=28.31 Aligned_cols=101 Identities=17% Similarity=0.267 Sum_probs=51.3
Q ss_pred CCEEEEEcCCCC--Ch----HHHHHHHHHHhhCCCCCEEEEecCCh--hhHHHHHHhh---------cCCcccccccccc
Q 037694 206 IPSILITAKGYP--DI----ATRFLLHRLNRAFPDLPILALVDWNP--AGLAILCTFK---------FGSIGMGMEAYRY 268 (355)
Q Consensus 206 ~~~IlITgkGyP--d~----~TR~fL~~L~~~~~~lpv~~l~D~DP--~Gi~I~~~yk---------~GS~~~~~~~~~~ 268 (355)
..+|++++-+ | |. .-++.++++.... ..||++.+++-. .|+.|++.-- +||.........+
T Consensus 47 v~~ivL~~~s-~Gg~~~~~~~i~~~l~~~~~~~-~kPVia~v~g~a~~gG~~lA~a~D~i~a~~~a~~g~~Gv~~~~~~~ 124 (240)
T 3rst_A 47 VKGIVLKVNS-PGGGVYESAEIHKKLEEIKKET-KKPIYVSMGSMAASGGYYISTAADKIFATPETLTGSLGVIMESVNY 124 (240)
T ss_dssp EEEEEEEEEE-CCBCHHHHHHHHHHHHHHHHHH-CCCEEEEEEEEEETHHHHHHTTSSEEEECTTCEEECCCCEEEEEEC
T ss_pred cEEEEEEecC-CCCCHHHHHHHHHHHHHHHHhC-CCeEEEEECCeehHhHHHHHHhCCeeEECCCCeEeccceeeEecCH
Confidence 3467776543 2 22 2344555665423 579999988665 4666664321 1222111111001
Q ss_pred cccceeeccccccccc--CC--CCccCCCCHHHHHHHHHhhhhh
Q 037694 269 ACNVKWLGLRGDDVQL--IP--EQSLLPLKPRDLQIARSLMSSE 308 (355)
Q Consensus 269 ~~~~~wlGv~~~di~~--l~--~~~~~pLt~~D~~~l~~ll~~~ 308 (355)
..-+.-+|+.+..+.. .+ .+.+.++|+.+++.+++++..-
T Consensus 125 ~~~l~k~Gi~~~~~~~G~~k~~~~p~~~~s~~~~~~~~~~l~~~ 168 (240)
T 3rst_A 125 SKLADKLGISFETIKSGAHADIMSPSREMTKEEKNIMQSMVDNS 168 (240)
T ss_dssp HHHHHHHTCEEEEEESSTTTTTTCTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEEEeccccccccCCCCCCCHHHHHHHHHHHHHH
Confidence 0012234555544321 11 1234789999999999998763
No 90
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=25.70 E-value=1.7e+02 Score=22.12 Aligned_cols=63 Identities=11% Similarity=0.140 Sum_probs=34.6
Q ss_pred EEEEEehhhHHHHHHhccccCCCCEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCC---hhhHHHHHHhh
Q 037694 184 YIIVVEKHAIFQRLTEDFVFNQIPSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWN---PAGLAILCTFK 255 (355)
Q Consensus 184 ~VLvVEK~avF~rL~~~~~~~~~~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~D---P~Gi~I~~~yk 255 (355)
.||+||.+..+...+..-+......+.++. .....+..+.+.. |=++++|.+ -.|+......+
T Consensus 12 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~------~~~~al~~l~~~~---~dlvllD~~lp~~~g~~~~~~l~ 77 (140)
T 3c97_A 12 SVLIAEDNDICRLVAAKALEKCTNDITVVT------NGLQALQAYQNRQ---FDVIIMDIQMPVMDGLEAVSEIR 77 (140)
T ss_dssp EEEEECCCHHHHHHHHHHHTTTCSEEEEES------SHHHHHHHHHHSC---CSEEEECTTCCSSCHHHHHHHHH
T ss_pred eEEEEcCCHHHHHHHHHHHHHcCCceEEEC------CHHHHHHHHhcCC---CCEEEEeCCCCCCcHHHHHHHHH
Confidence 488888888877766554432222222221 2345555555432 446677754 35776666554
No 91
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=24.47 E-value=99 Score=27.05 Aligned_cols=18 Identities=44% Similarity=0.661 Sum_probs=13.3
Q ss_pred cEEEEEehhhHHHHHHhc
Q 037694 183 RYIIVVEKHAIFQRLTED 200 (355)
Q Consensus 183 ~~VLvVEK~avF~rL~~~ 200 (355)
..||+||-+..+..++..
T Consensus 130 ~~ILivdd~~~~~~~l~~ 147 (254)
T 2ayx_A 130 MMILVVDDHPINRRLLAD 147 (254)
T ss_dssp CEEEEEESSHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHH
Confidence 358999998887766654
No 92
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=22.63 E-value=61 Score=26.03 Aligned_cols=57 Identities=9% Similarity=0.159 Sum_probs=38.0
Q ss_pred EEEE-EehhhHHHHHHhccccCCCCEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHH
Q 037694 184 YIIV-VEKHAIFQRLTEDFVFNQIPSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLA 249 (355)
Q Consensus 184 ~VLv-VEK~avF~rL~~~~~~~~~~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~ 249 (355)
.+++ -..+-+|-..++ ....+||++||.-.|+-......+ +. ++||+ .++.|-|-..
T Consensus 55 l~I~~G~r~~~~l~a~~---~~~~~~iIlt~g~~~~~~i~~~A~----~~-~ipvl-~t~~~T~~~~ 112 (139)
T 2ioj_A 55 ALVTGGDRSDLLLTALE---MPNVRCLILTGNLEPVQLVLTKAE----ER-GVPVI-LTGHDTLTAV 112 (139)
T ss_dssp EEEEETTCHHHHHHHTT---CTTEEEEEEETTCCCCHHHHHHHH----HH-TCCEE-ECSSCHHHHH
T ss_pred EEEEcCCHHHHHHHHHh---CCCCcEEEEcCCCCCCHHHHHHHH----HC-CCeEE-EECCCHHHHH
Confidence 3444 455555655543 123689999999999988875554 33 79987 5888887764
No 93
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=22.30 E-value=1.3e+02 Score=25.18 Aligned_cols=50 Identities=10% Similarity=0.254 Sum_probs=36.4
Q ss_pred CEEEEEcCCCCChHHHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHhhcCC
Q 037694 207 PSILITAKGYPDIATRFLLHRLNRAFPDLPILALVDWNPAGLAILCTFKFGS 258 (355)
Q Consensus 207 ~~IlITgkGyPd~~TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~yk~GS 258 (355)
|-++|.--..|+...-.+++.|.+. |++|++.++..+... .+...++.|.
T Consensus 49 ~dlvllD~~l~~~~g~~~~~~l~~~-~~~~ii~lt~~~~~~-~~~~~~~~ga 98 (230)
T 2oqr_A 49 ADIVLLDLMLPGMSGTDVCKQLRAR-SSVPVIMVTARDSEI-DKVVGLELGA 98 (230)
T ss_dssp CSEEEEESSCSSSCHHHHHHHHHHH-CSCSEEEEECCHHHH-HHHHHHHHCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHcC-CCCCEEEEeCCCcHH-HHHHHHHcCC
Confidence 4566777778888888999999886 789999998865543 3444556664
No 94
>3kio_A Ribonuclease H2 subunit A; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_A 3puf_A 3p56_A
Probab=21.94 E-value=29 Score=32.68 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.1
Q ss_pred EcCCCC-ChHHHHHHHHHHh
Q 037694 212 TAKGYP-DIATRFLLHRLNR 230 (355)
Q Consensus 212 TgkGyP-d~~TR~fL~~L~~ 230 (355)
.|+||| |-.|+.||+.+.+
T Consensus 207 ~GsGYPSDp~T~~~L~~~~~ 226 (301)
T 3kio_A 207 YGSGYPNDPKTKAWLRKHVD 226 (301)
T ss_dssp CCSSSTTSHHHHHHHHTTCB
T ss_pred CCCcCCCCHHHHHHHHHccc
Confidence 589999 7889999998744
No 95
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=21.29 E-value=2.2e+02 Score=21.73 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=10.8
Q ss_pred EEEEEehhhHHHHHHhc
Q 037694 184 YIIVVEKHAIFQRLTED 200 (355)
Q Consensus 184 ~VLvVEK~avF~rL~~~ 200 (355)
.|||||-+..+...++.
T Consensus 16 ~iLivdd~~~~~~~l~~ 32 (143)
T 3m6m_D 16 RMLVADDHEANRMVLQR 32 (143)
T ss_dssp EEEEECSSHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHH
Confidence 46777777666655544
No 96
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=21.12 E-value=59 Score=27.60 Aligned_cols=45 Identities=9% Similarity=0.097 Sum_probs=30.4
Q ss_pred CCCCEEEEEcCCCCChH--------HHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHh
Q 037694 204 NQIPSILITAKGYPDIA--------TRFLLHRLNRAFPDLPILALVDWNPAGLAILCTF 254 (355)
Q Consensus 204 ~~~~~IlITgkGyPd~~--------TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~y 254 (355)
...+.|+++|.|.|+-. ...+++...+. +.|+++.+ .|+.+++..
T Consensus 41 ~~~dglilpG~g~~~~~~~~l~~~~~~~~i~~~~~~--~~PilGIC----~G~Qll~~~ 93 (201)
T 1gpw_B 41 DLYDLLFIPGVGHFGEGMRRLRENDLIDFVRKHVED--ERYVVGVC----LGMQLLFEE 93 (201)
T ss_dssp SCCSEEEECCCSCSHHHHHHHHHTTCHHHHHHHHHT--TCEEEEET----HHHHTTSSE
T ss_pred cCCCEEEECCCCcHHHHHHHHHhhCHHHHHHHHHHc--CCeEEEEC----hhHHHHHHh
Confidence 44678999998887643 22445444432 78999886 788777664
No 97
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=20.93 E-value=1.9e+02 Score=22.96 Aligned_cols=16 Identities=19% Similarity=0.644 Sum_probs=11.2
Q ss_pred EEEEehhhHHHHHHhc
Q 037694 185 IIVVEKHAIFQRLTED 200 (355)
Q Consensus 185 VLvVEK~avF~rL~~~ 200 (355)
|||||-+....++++.
T Consensus 15 ILiVDD~~~~r~~l~~ 30 (134)
T 3to5_A 15 ILIVDDFSTMRRIVKN 30 (134)
T ss_dssp EEEECSCHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHH
Confidence 7778777776666654
No 98
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=20.50 E-value=52 Score=27.99 Aligned_cols=44 Identities=16% Similarity=0.220 Sum_probs=30.7
Q ss_pred CCCEEEEEcCCCCChH--------HHHHHHHHHhhCCCCCEEEEecCChhhHHHHHHh
Q 037694 205 QIPSILITAKGYPDIA--------TRFLLHRLNRAFPDLPILALVDWNPAGLAILCTF 254 (355)
Q Consensus 205 ~~~~IlITgkGyPd~~--------TR~fL~~L~~~~~~lpv~~l~D~DP~Gi~I~~~y 254 (355)
..+.|+++|.|.|+.. .+.+++...+. +.|+++.+ .|..+++..
T Consensus 40 ~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~~~--~~PilGIC----~G~Qll~~~ 91 (200)
T 1ka9_H 40 EADLLVLPGQGHFGQVMRAFQESGFVERVRRHLER--GLPFLGIC----VGMQVLYEG 91 (200)
T ss_dssp SCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHHHT--TCCEEECT----HHHHTTSSE
T ss_pred cCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHHHc--CCeEEEEc----HHHHHHHHh
Confidence 4678999988887532 35566665543 79998765 788777665
No 99
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=20.44 E-value=55 Score=24.03 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=24.3
Q ss_pred CCCccccceeccccCCCccccCchHHHHHHHHH
Q 037694 86 EKRVTQRELFYKLLCDSPEYFTSQLQVNRTIQD 118 (355)
Q Consensus 86 ~~~~T~RdiYY~~~~~~~~lF~~Q~~~d~~i~d 118 (355)
|.+..+.|+||.. +.-.-|.+-.++.+.+..
T Consensus 27 g~s~~k~DvyY~s--P~Gkr~RS~~ev~~YL~~ 57 (72)
T 2ky8_A 27 GLSAGKSDVYYFS--PSGKKFRSKPQLARYLGN 57 (72)
T ss_dssp STTTTCEEEEEEC--TTCCEEESHHHHHHHHTT
T ss_pred CCCCCceEEEEEC--CCCCEeEcHHHHHHHHhc
Confidence 4456899999985 345789999999988865
Done!