BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037695
(701 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 303 LMEKMVNDSNLFHDQGRIEEAKE-------LVNQMSQMGCIPDVVTYTAVVNGFCRVGEL 355
+++K+V + F + R+ AK+ +V QM G P + +Y + GFCR G+
Sbjct: 97 IVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156
Query: 356 DQAKKMLQQM 365
D+A ++ M
Sbjct: 157 DKAYEVDAHM 166
>pdb|3SPA|A Chain A, Crystal Structure Of Human Mitochondrial Rna Polymerase
Length = 1134
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 179 FSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKAL-RFLERM 237
++ +M+ ++R G + +YVL M++ A + P+LL A+ + ++ A + R LE+M
Sbjct: 168 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQM 227
Query: 238 QLAGITPNVLTYNCLIKG------YCDLHRIKDAIKLIDEMP 273
G+ L L+ +H++K L ++P
Sbjct: 228 SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
>pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G25|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana, Semet Substituted Form With Sr
Length = 501
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 303 LMEKMVNDSNLFHDQGRI-------EEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGEL 355
+++K+V + F + R+ E A + V Q G P + +Y + GFCR G+
Sbjct: 97 IVDKVVPNEATFTNGARLAVAKDDPEXAFDXVKQXKAFGIQPRLRSYGPALFGFCRKGDA 156
Query: 356 DQA 358
D+A
Sbjct: 157 DKA 159
>pdb|3HZR|A Chain A, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|B Chain B, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|C Chain C, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|D Chain D, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|E Chain E, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
pdb|3HZR|F Chain F, Tryptophanyl-Trna Synthetase Homolog From Entamoeba
Histolytica
Length = 386
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 9/104 (8%)
Query: 521 IDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHR-YCQVGRVEDLLKLLEKMLSKQ 579
I L++ + EA+++ ++ L +T I+ Y G++ + L+EK
Sbjct: 125 IKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFGKMYRTISLVEKA---- 180
Query: 580 KCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVL 623
TAYN V++ +F Y + GK+ + TAS S H
Sbjct: 181 ---TAYN-VVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFF 220
>pdb|1O5I|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Reductase (Tm1169) From Thermotoga Maritima At 2.50 A
Resolution
pdb|1O5I|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Reductase (Tm1169) From Thermotoga Maritima At 2.50 A
Resolution
pdb|1O5I|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Reductase (Tm1169) From Thermotoga Maritima At 2.50 A
Resolution
pdb|1O5I|D Chain D, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Reductase (Tm1169) From Thermotoga Maritima At 2.50 A
Resolution
Length = 249
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 17/75 (22%)
Query: 236 RMQLAG--------ITPNVLTYNCLIKGYCDLHRIKDAI------KLIDEMPLKGCS-PD 280
RM L G + P +T NC+ G+ + R+K+ + ++ ++P++ + P+
Sbjct: 157 RMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKELLSEEKKKQVESQIPMRRMAKPE 216
Query: 281 KVSYYTVMGYLCKEK 295
+++ +V+ +LC EK
Sbjct: 217 EIA--SVVAFLCSEK 229
>pdb|1ZJR|A Chain A, Crystal Structure Of A. Aeolicus TrmhSPOU TRNA MODIFYING
ENZYME
Length = 211
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 287 VMGYLCKEKRIKEVRDLMEKMVNDSNLFHD 316
VM YL EKR+K +R+++EK D +F D
Sbjct: 2 VMEYLVLEKRLKRLREVLEKRQKDLIVFAD 31
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,031,126
Number of Sequences: 62578
Number of extensions: 737118
Number of successful extensions: 2282
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2271
Number of HSP's gapped (non-prelim): 14
length of query: 701
length of database: 14,973,337
effective HSP length: 106
effective length of query: 595
effective length of database: 8,340,069
effective search space: 4962341055
effective search space used: 4962341055
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)