Query 037695
Match_columns 701
No_of_seqs 778 out of 3912
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 03:31:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037695.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037695hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1.2E-68 2.7E-73 605.4 63.2 556 112-688 159-727 (857)
2 PLN03218 maturation of RBCL 1; 100.0 1E-67 2.2E-72 584.5 68.5 535 115-686 380-914 (1060)
3 PLN03077 Protein ECB2; Provisi 100.0 4.4E-68 9.6E-73 601.0 61.0 542 115-678 96-651 (857)
4 PLN03218 maturation of RBCL 1; 100.0 2.5E-64 5.5E-69 557.5 66.0 506 138-682 367-877 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 3.5E-61 7.5E-66 531.8 54.8 474 139-649 85-560 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.1E-60 2.4E-65 527.8 53.8 504 111-652 93-610 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.8E-34 1.3E-38 331.0 74.5 561 115-693 305-878 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.9E-34 1.3E-38 331.0 73.5 553 111-680 335-899 (899)
9 PRK11447 cellulose synthase su 100.0 9.2E-25 2E-29 253.8 71.0 552 113-680 36-739 (1157)
10 PRK11447 cellulose synthase su 100.0 2.6E-23 5.6E-28 241.8 69.1 532 143-687 30-706 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 8.4E-22 1.8E-26 218.3 68.1 540 113-687 86-712 (987)
12 PRK09782 bacteriophage N4 rece 99.9 6.6E-21 1.4E-25 211.3 64.2 547 117-693 56-684 (987)
13 KOG2002 TPR-containing nuclear 99.9 1.3E-20 2.8E-25 194.9 56.2 563 120-692 145-756 (1018)
14 KOG4626 O-linked N-acetylgluco 99.9 2E-22 4.4E-27 197.4 37.2 456 179-675 51-513 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 7.7E-22 1.7E-26 193.4 39.6 433 143-614 50-488 (966)
16 KOG2076 RNA polymerase III tra 99.9 7.9E-18 1.7E-22 173.4 55.6 565 112-683 146-851 (895)
17 TIGR00990 3a0801s09 mitochondr 99.9 4.6E-19 1E-23 193.8 50.3 92 179-273 130-221 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 3.5E-18 7.5E-23 186.9 54.7 431 143-645 129-570 (615)
19 KOG2002 TPR-containing nuclear 99.9 4E-17 8.6E-22 169.4 56.0 557 114-684 173-801 (1018)
20 PRK11788 tetratricopeptide rep 99.9 1.1E-19 2.5E-24 188.7 37.2 299 348-651 44-352 (389)
21 PRK11788 tetratricopeptide rep 99.9 1.3E-19 2.9E-24 188.2 37.6 300 381-687 42-353 (389)
22 PRK15174 Vi polysaccharide exp 99.9 1.1E-18 2.4E-23 189.8 44.4 333 345-686 48-386 (656)
23 PRK15174 Vi polysaccharide exp 99.9 6.2E-18 1.3E-22 184.0 48.0 300 339-645 76-380 (656)
24 PRK10049 pgaA outer membrane p 99.9 1.2E-17 2.6E-22 185.8 48.4 417 208-689 12-464 (765)
25 PRK10049 pgaA outer membrane p 99.9 3.8E-17 8.2E-22 181.9 49.8 434 162-662 3-470 (765)
26 PRK14574 hmsH outer membrane p 99.8 1E-15 2.3E-20 166.8 54.9 465 138-658 31-523 (822)
27 PRK14574 hmsH outer membrane p 99.8 1.3E-15 2.8E-20 166.0 54.9 452 183-690 41-522 (822)
28 KOG0495 HAT repeat protein [RN 99.8 2.3E-14 5E-19 142.5 57.3 487 155-685 390-884 (913)
29 KOG0495 HAT repeat protein [RN 99.8 2.6E-13 5.6E-18 135.1 58.0 541 119-687 265-852 (913)
30 KOG4422 Uncharacterized conser 99.8 2.7E-14 5.9E-19 135.0 45.7 445 141-647 116-591 (625)
31 KOG2076 RNA polymerase III tra 99.8 1E-13 2.2E-18 143.5 50.4 540 146-690 144-778 (895)
32 KOG2003 TPR repeat-containing 99.8 5.4E-15 1.2E-19 140.5 34.3 483 175-680 200-721 (840)
33 KOG4422 Uncharacterized conser 99.7 1.2E-13 2.7E-18 130.6 38.8 366 138-544 204-591 (625)
34 KOG1915 Cell cycle control pro 99.7 2.2E-11 4.8E-16 117.1 53.6 465 143-645 75-584 (677)
35 KOG1915 Cell cycle control pro 99.7 9.6E-12 2.1E-16 119.6 49.8 471 174-682 71-586 (677)
36 KOG2003 TPR repeat-containing 99.7 1.5E-13 3.3E-18 130.8 37.2 478 143-631 203-708 (840)
37 KOG0547 Translocase of outer m 99.7 2.3E-13 5E-18 131.1 34.6 223 454-682 336-567 (606)
38 KOG1155 Anaphase-promoting com 99.7 2.5E-12 5.4E-17 123.4 39.4 348 334-698 159-512 (559)
39 PF13429 TPR_15: Tetratricopep 99.7 4.1E-16 9E-21 153.1 12.5 262 414-681 13-277 (280)
40 KOG1155 Anaphase-promoting com 99.7 9.3E-12 2E-16 119.6 41.1 305 381-693 234-548 (559)
41 KOG1173 Anaphase-promoting com 99.7 4.9E-12 1.1E-16 124.6 40.1 280 373-660 243-530 (611)
42 KOG2047 mRNA splicing factor [ 99.7 7.1E-10 1.5E-14 111.0 54.9 543 112-670 109-712 (835)
43 PRK10747 putative protoheme IX 99.6 1.1E-12 2.4E-17 134.8 35.6 284 387-681 97-390 (398)
44 TIGR00540 hemY_coli hemY prote 99.6 1.1E-12 2.3E-17 135.7 35.7 289 386-681 96-399 (409)
45 KOG1173 Anaphase-promoting com 99.6 1.6E-11 3.6E-16 121.0 41.2 268 338-610 243-517 (611)
46 KOG1126 DNA-binding cell divis 99.6 1.6E-13 3.5E-18 137.8 25.4 287 389-687 334-626 (638)
47 TIGR00540 hemY_coli hemY prote 99.6 3.2E-12 7E-17 132.1 34.6 288 350-645 95-398 (409)
48 PRK10747 putative protoheme IX 99.6 5.2E-12 1.1E-16 129.8 35.7 220 418-645 162-389 (398)
49 PF13429 TPR_15: Tetratricopep 99.6 1.1E-14 2.4E-19 143.0 13.7 261 379-645 13-276 (280)
50 KOG2047 mRNA splicing factor [ 99.6 6.8E-09 1.5E-13 104.1 50.1 512 111-645 144-718 (835)
51 KOG0547 Translocase of outer m 99.6 5.7E-11 1.2E-15 115.0 34.4 220 386-610 338-565 (606)
52 COG2956 Predicted N-acetylgluc 99.6 1.5E-11 3.3E-16 112.8 28.7 291 386-683 47-349 (389)
53 KOG1126 DNA-binding cell divis 99.6 2E-12 4.4E-17 130.0 25.3 288 354-651 334-625 (638)
54 KOG4318 Bicoid mRNA stability 99.5 7.9E-11 1.7E-15 121.8 36.5 527 132-694 16-609 (1088)
55 COG3071 HemY Uncharacterized e 99.5 1.5E-10 3.3E-15 109.8 34.0 290 318-644 98-388 (400)
56 COG3071 HemY Uncharacterized e 99.5 2.1E-10 4.5E-15 108.9 33.7 287 387-681 97-390 (400)
57 KOG4318 Bicoid mRNA stability 99.5 7.7E-11 1.7E-15 121.9 33.1 477 163-686 12-562 (1088)
58 COG2956 Predicted N-acetylgluc 99.5 1.6E-10 3.4E-15 106.2 31.5 288 351-646 47-347 (389)
59 KOG3785 Uncharacterized conser 99.5 5.3E-09 1.2E-13 97.3 41.7 441 118-612 35-491 (557)
60 KOG4162 Predicted calmodulin-b 99.5 3.3E-09 7.2E-14 108.9 43.1 445 206-686 318-788 (799)
61 KOG4162 Predicted calmodulin-b 99.5 1.3E-08 2.8E-13 104.7 45.4 410 242-692 319-760 (799)
62 KOG1156 N-terminal acetyltrans 99.5 2.8E-08 6E-13 100.2 45.8 464 179-680 11-510 (700)
63 KOG1156 N-terminal acetyltrans 99.4 3.2E-08 6.9E-13 99.8 45.1 459 112-608 12-508 (700)
64 KOG1174 Anaphase-promoting com 99.4 3.4E-09 7.4E-14 100.7 36.1 293 350-652 207-504 (564)
65 KOG3785 Uncharacterized conser 99.4 9.3E-09 2E-13 95.8 37.5 452 148-655 29-497 (557)
66 TIGR02521 type_IV_pilW type IV 99.4 2.2E-10 4.8E-15 109.7 27.5 199 479-681 31-232 (234)
67 KOG1129 TPR repeat-containing 99.4 3.9E-11 8.4E-16 110.1 19.7 239 447-691 226-468 (478)
68 PF12569 NARP1: NMDA receptor- 99.4 1.9E-09 4.1E-14 111.7 33.8 130 551-681 196-334 (517)
69 KOG1129 TPR repeat-containing 99.4 5.8E-11 1.3E-15 108.9 19.8 230 377-611 226-458 (478)
70 TIGR02521 type_IV_pilW type IV 99.4 4.8E-10 1E-14 107.3 27.6 199 444-645 31-231 (234)
71 PRK12370 invasion protein regu 99.4 2.9E-10 6.3E-15 122.3 27.3 251 423-683 275-537 (553)
72 PRK12370 invasion protein regu 99.4 5.8E-10 1.3E-14 120.0 29.2 248 388-645 275-534 (553)
73 KOG1840 Kinesin light chain [C 99.4 3.9E-10 8.4E-15 115.2 26.0 237 443-679 198-477 (508)
74 KOG1174 Anaphase-promoting com 99.4 4.6E-08 9.9E-13 93.2 37.3 317 370-693 190-512 (564)
75 KOG2376 Signal recognition par 99.3 3.3E-07 7.2E-12 91.7 42.2 121 144-275 15-139 (652)
76 COG3063 PilF Tfp pilus assembl 99.3 6.7E-10 1.4E-14 97.7 20.7 206 481-690 37-245 (250)
77 KOG0985 Vesicle coat protein c 99.3 4.3E-07 9.4E-12 95.8 44.5 224 419-678 1058-1305(1666)
78 KOG0985 Vesicle coat protein c 99.3 2.9E-06 6.2E-11 89.9 48.2 143 514-678 1104-1246(1666)
79 COG3063 PilF Tfp pilus assembl 99.3 6.9E-09 1.5E-13 91.4 24.6 196 447-645 38-235 (250)
80 PRK11189 lipoprotein NlpI; Pro 99.3 4.9E-09 1.1E-13 103.1 26.4 196 480-682 65-266 (296)
81 KOG0624 dsRNA-activated protei 99.2 7.7E-08 1.7E-12 89.4 31.6 331 338-696 37-385 (504)
82 KOG0548 Molecular co-chaperone 99.2 7.6E-08 1.6E-12 95.3 31.6 437 184-693 10-467 (539)
83 KOG1840 Kinesin light chain [C 99.2 1.2E-08 2.5E-13 104.5 26.8 197 449-645 246-478 (508)
84 PF13041 PPR_2: PPR repeat fam 99.2 3.3E-11 7.1E-16 82.4 5.7 49 244-292 1-49 (50)
85 KOG1127 TPR repeat-containing 99.2 1.8E-06 4E-11 91.5 42.8 184 120-309 473-658 (1238)
86 KOG2376 Signal recognition par 99.2 2.2E-06 4.8E-11 86.0 41.1 141 494-638 356-512 (652)
87 KOG3617 WD40 and TPR repeat-co 99.2 1E-05 2.2E-10 84.0 48.5 500 118-683 741-1361(1416)
88 PF13041 PPR_2: PPR repeat fam 99.2 8.8E-11 1.9E-15 80.3 6.6 49 477-525 1-49 (50)
89 KOG3616 Selective LIM binding 99.1 7.2E-07 1.6E-11 91.0 35.8 195 345-573 738-932 (1636)
90 PF12569 NARP1: NMDA receptor- 99.1 2E-07 4.3E-12 96.9 33.0 290 347-645 12-333 (517)
91 PRK11189 lipoprotein NlpI; Pro 99.1 5E-08 1.1E-12 96.0 27.3 216 423-646 40-265 (296)
92 KOG0548 Molecular co-chaperone 99.1 2.1E-06 4.6E-11 85.3 37.5 426 116-612 13-456 (539)
93 KOG1127 TPR repeat-containing 99.1 6.5E-06 1.4E-10 87.5 40.8 560 120-694 507-1188(1238)
94 KOG3617 WD40 and TPR repeat-co 99.0 3.2E-05 6.9E-10 80.6 43.0 249 373-651 1079-1364(1416)
95 PF04733 Coatomer_E: Coatomer 99.0 1.8E-08 4E-13 97.4 18.5 147 489-645 112-264 (290)
96 KOG3616 Selective LIM binding 99.0 1.8E-05 3.9E-10 81.2 39.9 215 384-641 716-932 (1636)
97 KOG0624 dsRNA-activated protei 99.0 9.1E-06 2E-10 76.0 34.2 333 210-582 37-374 (504)
98 cd05804 StaR_like StaR_like; a 99.0 3.2E-06 6.8E-11 86.7 35.4 199 483-682 118-337 (355)
99 PRK04841 transcriptional regul 99.0 6.2E-05 1.3E-09 87.7 48.1 303 344-646 414-760 (903)
100 PRK04841 transcriptional regul 99.0 0.0002 4.3E-09 83.5 52.1 336 348-683 383-762 (903)
101 KOG4340 Uncharacterized conser 98.9 3.2E-06 7E-11 77.4 27.5 190 482-680 244-442 (459)
102 cd05804 StaR_like StaR_like; a 98.9 1.1E-05 2.5E-10 82.5 35.7 303 339-645 6-335 (355)
103 PF04733 Coatomer_E: Coatomer 98.9 1.2E-07 2.6E-12 91.8 19.5 169 522-698 110-282 (290)
104 KOG1128 Uncharacterized conser 98.9 4.9E-07 1.1E-11 92.8 23.8 225 440-684 394-619 (777)
105 KOG1125 TPR repeat-containing 98.9 2.7E-07 5.8E-12 92.3 21.3 97 512-609 428-525 (579)
106 PLN02789 farnesyltranstransfer 98.9 2.3E-06 5.1E-11 84.0 27.3 218 457-679 50-300 (320)
107 KOG1125 TPR repeat-containing 98.9 3.8E-07 8.3E-12 91.2 21.6 251 419-674 295-564 (579)
108 PRK10370 formate-dependent nit 98.9 7.2E-07 1.6E-11 81.5 21.5 121 562-684 52-176 (198)
109 TIGR03302 OM_YfiO outer membra 98.9 5.1E-07 1.1E-11 86.3 21.6 186 477-683 31-234 (235)
110 KOG1070 rRNA processing protei 98.8 2.6E-06 5.7E-11 93.4 27.7 233 441-678 1455-1697(1710)
111 KOG1128 Uncharacterized conser 98.8 1.4E-06 3.1E-11 89.5 24.2 219 407-645 396-615 (777)
112 KOG4340 Uncharacterized conser 98.8 1E-05 2.2E-10 74.2 26.8 195 144-371 13-210 (459)
113 KOG1914 mRNA cleavage and poly 98.8 0.00023 5E-09 71.2 43.6 444 137-598 16-526 (656)
114 KOG1914 mRNA cleavage and poly 98.8 0.00023 5E-09 71.1 40.7 149 495-645 347-500 (656)
115 KOG2053 Mitochondrial inherita 98.8 0.00041 8.8E-09 73.7 45.5 223 119-369 23-256 (932)
116 PLN02789 farnesyltranstransfer 98.8 1.8E-05 3.8E-10 77.8 28.5 206 420-630 48-268 (320)
117 TIGR03302 OM_YfiO outer membra 98.7 1.6E-06 3.5E-11 82.8 20.4 188 441-646 30-232 (235)
118 PRK15359 type III secretion sy 98.7 6.1E-07 1.3E-11 77.5 15.0 93 552-645 27-120 (144)
119 PRK15179 Vi polysaccharide bio 98.7 2.6E-06 5.7E-11 92.2 22.9 133 511-645 83-216 (694)
120 PRK10370 formate-dependent nit 98.7 4E-06 8.8E-11 76.6 20.5 117 527-645 52-172 (198)
121 KOG3060 Uncharacterized conser 98.7 1.2E-05 2.6E-10 72.3 21.9 186 457-645 25-219 (289)
122 TIGR02552 LcrH_SycD type III s 98.6 1.5E-06 3.2E-11 74.8 15.1 115 571-687 5-120 (135)
123 KOG1070 rRNA processing protei 98.6 3.1E-05 6.8E-10 85.4 27.7 223 406-633 1455-1687(1710)
124 COG5010 TadD Flp pilus assembl 98.6 1.3E-05 2.7E-10 72.9 20.8 156 483-641 70-226 (257)
125 PRK15359 type III secretion sy 98.6 1.4E-06 3E-11 75.2 14.4 113 571-688 15-128 (144)
126 PF12854 PPR_1: PPR repeat 98.6 7.3E-08 1.6E-12 58.9 4.3 32 241-272 2-33 (34)
127 COG5010 TadD Flp pilus assembl 98.6 1.5E-05 3.1E-10 72.5 20.4 157 448-607 70-227 (257)
128 KOG3060 Uncharacterized conser 98.5 0.0001 2.2E-09 66.5 23.8 190 421-613 24-222 (289)
129 PRK15179 Vi polysaccharide bio 98.5 4.6E-05 1E-09 82.8 26.0 145 475-623 82-228 (694)
130 TIGR02552 LcrH_SycD type III s 98.5 6E-06 1.3E-10 71.0 15.1 115 536-654 5-120 (135)
131 PF12854 PPR_1: PPR repeat 98.5 2E-07 4.4E-12 56.9 4.1 32 474-505 2-33 (34)
132 KOG2053 Mitochondrial inherita 98.5 0.0034 7.4E-08 67.0 45.3 190 115-309 53-254 (932)
133 COG4783 Putative Zn-dependent 98.5 5E-05 1.1E-09 75.2 22.5 140 523-682 315-455 (484)
134 PF09976 TPR_21: Tetratricopep 98.4 1.1E-05 2.3E-10 70.1 15.3 125 551-678 14-144 (145)
135 KOG3081 Vesicle coat complex C 98.4 0.00031 6.7E-09 64.0 23.9 97 489-589 147-248 (299)
136 PRK14720 transcript cleavage f 98.4 3.8E-05 8.2E-10 84.1 21.6 130 441-576 28-176 (906)
137 KOG0553 TPR repeat-containing 98.3 5.3E-06 1.1E-10 76.8 11.4 105 590-697 89-194 (304)
138 PRK14720 transcript cleavage f 98.3 0.00025 5.4E-09 77.9 25.6 220 406-663 28-268 (906)
139 COG4783 Putative Zn-dependent 98.3 0.00012 2.6E-09 72.5 20.8 179 511-694 271-450 (484)
140 KOG0550 Molecular chaperone (D 98.3 8.4E-05 1.8E-09 71.7 18.9 288 380-693 55-361 (486)
141 KOG3081 Vesicle coat complex C 98.3 0.001 2.2E-08 60.7 24.5 254 382-653 16-276 (299)
142 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.6E-05 7.9E-10 77.1 16.4 116 521-641 176-292 (395)
143 KOG2041 WD40 repeat protein [G 98.3 0.0078 1.7E-07 62.3 32.4 373 243-679 689-1084(1189)
144 PF09976 TPR_21: Tetratricopep 98.2 0.00012 2.6E-09 63.6 16.6 123 517-643 15-144 (145)
145 TIGR02795 tol_pal_ybgF tol-pal 98.2 4E-05 8.7E-10 64.1 13.4 104 584-687 4-111 (119)
146 PRK15363 pathogenicity island 98.2 0.00016 3.5E-09 61.3 16.3 93 552-645 38-131 (157)
147 PRK15363 pathogenicity island 98.1 0.00013 2.9E-09 61.8 14.8 98 584-683 37-134 (157)
148 PRK10153 DNA-binding transcrip 98.1 0.00015 3.4E-09 76.3 18.5 141 545-687 333-488 (517)
149 PF07079 DUF1347: Protein of u 98.1 0.012 2.7E-07 58.0 42.4 456 113-623 14-531 (549)
150 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00026 5.6E-09 71.1 17.2 122 482-608 172-294 (395)
151 KOG0550 Molecular chaperone (D 98.0 0.0074 1.6E-07 58.8 24.6 155 454-613 179-352 (486)
152 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00018 4E-09 60.0 12.9 95 551-645 4-104 (119)
153 KOG0553 TPR repeat-containing 98.0 0.00014 3E-09 67.6 12.6 87 524-611 91-178 (304)
154 PLN03088 SGT1, suppressor of 98.0 0.00015 3.2E-09 73.3 13.9 97 554-653 7-104 (356)
155 PF12895 Apc3: Anaphase-promot 97.9 2.6E-05 5.7E-10 60.2 6.6 81 595-678 2-84 (84)
156 PLN03088 SGT1, suppressor of 97.9 0.00024 5.1E-09 71.8 15.1 94 520-614 8-102 (356)
157 cd00189 TPR Tetratricopeptide 97.9 0.00017 3.6E-09 57.2 11.4 92 588-681 6-97 (100)
158 cd00189 TPR Tetratricopeptide 97.9 0.0002 4.3E-09 56.8 11.6 94 551-645 2-96 (100)
159 COG4700 Uncharacterized protei 97.9 0.0047 1E-07 53.2 19.3 134 510-645 85-221 (251)
160 TIGR00756 PPR pentatricopeptid 97.8 2.1E-05 4.5E-10 48.9 3.6 33 248-280 2-34 (35)
161 COG4235 Cytochrome c biogenesi 97.8 0.0012 2.7E-08 62.0 16.6 99 546-645 153-255 (287)
162 PF10037 MRP-S27: Mitochondria 97.8 0.00039 8.4E-09 70.1 13.8 121 406-526 63-185 (429)
163 PRK02603 photosystem I assembl 97.8 0.00067 1.5E-08 60.9 14.0 113 549-683 35-151 (172)
164 PRK02603 photosystem I assembl 97.8 0.001 2.3E-08 59.6 15.0 111 514-645 35-148 (172)
165 PF12895 Apc3: Anaphase-promot 97.8 5.9E-05 1.3E-09 58.3 5.9 79 562-642 2-83 (84)
166 TIGR00756 PPR pentatricopeptid 97.8 5E-05 1.1E-09 47.1 4.5 33 516-548 2-34 (35)
167 PF13432 TPR_16: Tetratricopep 97.7 0.00013 2.9E-09 53.0 7.2 61 623-685 3-64 (65)
168 PF13812 PPR_3: Pentatricopept 97.7 5.5E-05 1.2E-09 46.5 4.2 32 516-547 3-34 (34)
169 PF13812 PPR_3: Pentatricopept 97.7 6E-05 1.3E-09 46.4 4.3 33 480-512 2-34 (34)
170 PF13414 TPR_11: TPR repeat; P 97.7 0.00017 3.7E-09 53.2 7.5 66 616-683 2-69 (69)
171 COG4235 Cytochrome c biogenesi 97.7 0.0019 4.2E-08 60.7 15.7 125 566-692 139-267 (287)
172 PRK10803 tol-pal system protei 97.7 0.0012 2.5E-08 63.1 14.5 95 593-687 154-252 (263)
173 CHL00033 ycf3 photosystem I as 97.7 0.001 2.2E-08 59.4 13.2 78 516-593 37-117 (168)
174 PF05843 Suf: Suppressor of fo 97.7 0.0016 3.5E-08 63.4 15.5 129 515-645 2-135 (280)
175 PF05843 Suf: Suppressor of fo 97.7 0.00062 1.3E-08 66.2 12.5 131 480-612 2-137 (280)
176 CHL00033 ycf3 photosystem I as 97.7 0.0012 2.5E-08 59.1 13.4 99 583-683 36-151 (168)
177 PF13414 TPR_11: TPR repeat; P 97.6 0.00032 6.8E-09 51.8 7.9 63 549-611 3-67 (69)
178 COG3898 Uncharacterized membra 97.6 0.072 1.6E-06 51.8 32.4 283 387-681 97-392 (531)
179 KOG1130 Predicted G-alpha GTPa 97.6 0.00075 1.6E-08 65.2 12.0 131 551-681 197-344 (639)
180 PRK10866 outer membrane biogen 97.6 0.0047 1E-07 58.5 17.3 166 513-679 31-239 (243)
181 PRK10153 DNA-binding transcrip 97.6 0.0093 2E-07 63.1 20.9 67 547-613 418-484 (517)
182 COG4700 Uncharacterized protei 97.6 0.019 4.2E-07 49.6 18.6 134 545-681 85-222 (251)
183 KOG2041 WD40 repeat protein [G 97.6 0.13 2.8E-06 53.7 28.7 121 138-271 689-821 (1189)
184 PF14938 SNAP: Soluble NSF att 97.6 0.0022 4.8E-08 62.7 15.1 165 479-645 35-224 (282)
185 PF10037 MRP-S27: Mitochondria 97.6 0.0013 2.9E-08 66.4 13.5 123 335-457 62-186 (429)
186 PF07079 DUF1347: Protein of u 97.5 0.11 2.4E-06 51.7 46.6 196 479-678 298-521 (549)
187 PF08579 RPM2: Mitochondrial r 97.5 0.0012 2.7E-08 51.8 10.0 68 190-257 39-115 (120)
188 PF14938 SNAP: Soluble NSF att 97.5 0.0023 4.9E-08 62.6 14.7 198 445-645 36-265 (282)
189 PF08579 RPM2: Mitochondrial r 97.5 0.0015 3.2E-08 51.4 10.3 75 451-525 32-115 (120)
190 PRK10803 tol-pal system protei 97.5 0.0038 8.3E-08 59.6 14.5 94 552-645 146-245 (263)
191 PF13432 TPR_16: Tetratricopep 97.5 0.00079 1.7E-08 48.9 7.8 54 557-610 5-59 (65)
192 PF13525 YfiO: Outer membrane 97.4 0.0046 1E-07 57.0 14.5 62 520-581 11-74 (203)
193 PF12688 TPR_5: Tetratrico pep 97.4 0.0044 9.6E-08 50.8 12.6 55 556-610 8-66 (120)
194 PRK10866 outer membrane biogen 97.4 0.043 9.3E-07 52.0 21.2 55 554-608 180-238 (243)
195 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.16 3.4E-06 50.4 36.6 146 444-593 397-546 (660)
196 PF01535 PPR: PPR repeat; Int 97.4 0.00014 3.1E-09 43.5 2.8 29 248-276 2-30 (31)
197 COG5107 RNA14 Pre-mRNA 3'-end 97.4 0.17 3.6E-06 50.3 36.8 453 161-652 29-535 (660)
198 PF12688 TPR_5: Tetratrico pep 97.4 0.0083 1.8E-07 49.2 13.6 91 520-610 7-103 (120)
199 PF01535 PPR: PPR repeat; Int 97.4 0.00024 5.2E-09 42.5 3.4 28 481-508 2-29 (31)
200 PF06239 ECSIT: Evolutionarily 97.3 0.0088 1.9E-07 53.5 13.9 105 174-297 45-154 (228)
201 PF06239 ECSIT: Evolutionarily 97.3 0.0057 1.2E-07 54.7 12.2 104 243-353 44-152 (228)
202 KOG1538 Uncharacterized conser 97.3 0.033 7.1E-07 57.4 18.7 126 213-363 558-694 (1081)
203 PF14559 TPR_19: Tetratricopep 97.2 0.0015 3.2E-08 48.0 6.9 49 562-610 4-53 (68)
204 PF10300 DUF3808: Protein of u 97.2 0.033 7E-07 58.6 19.3 162 519-681 193-376 (468)
205 PF14559 TPR_19: Tetratricopep 97.2 0.0016 3.5E-08 47.7 7.0 60 525-585 2-61 (68)
206 PF13525 YfiO: Outer membrane 97.2 0.087 1.9E-06 48.6 19.8 79 520-602 116-198 (203)
207 PF13371 TPR_9: Tetratricopept 97.1 0.0016 3.6E-08 48.5 6.6 61 625-686 3-63 (73)
208 COG1729 Uncharacterized protei 97.1 0.012 2.5E-07 54.8 13.2 99 592-690 151-253 (262)
209 PRK15331 chaperone protein Sic 97.1 0.032 6.8E-07 47.9 14.6 88 557-645 45-133 (165)
210 PRK15331 chaperone protein Sic 97.1 0.0091 2E-07 51.1 11.2 94 585-680 40-133 (165)
211 PRK11906 transcriptional regul 97.1 0.017 3.7E-07 58.1 14.5 149 529-681 273-436 (458)
212 KOG0543 FKBP-type peptidyl-pro 97.1 0.01 2.2E-07 58.2 12.5 98 583-683 258-357 (397)
213 COG0457 NrfG FOG: TPR repeat [ 97.0 0.32 7E-06 45.9 30.8 201 480-683 60-267 (291)
214 KOG2796 Uncharacterized conser 97.0 0.067 1.5E-06 49.0 15.9 165 113-288 157-326 (366)
215 PRK11906 transcriptional regul 96.9 0.058 1.3E-06 54.4 16.9 149 494-644 273-434 (458)
216 KOG1130 Predicted G-alpha GTPa 96.9 0.022 4.9E-07 55.4 13.4 281 347-645 25-343 (639)
217 KOG2796 Uncharacterized conser 96.9 0.33 7.2E-06 44.7 24.6 133 481-613 179-317 (366)
218 KOG1538 Uncharacterized conser 96.9 0.22 4.7E-06 51.7 20.7 77 525-610 758-845 (1081)
219 PF13281 DUF4071: Domain of un 96.9 0.33 7.1E-06 48.4 21.7 120 527-646 195-334 (374)
220 PF13512 TPR_18: Tetratricopep 96.9 0.044 9.6E-07 45.9 13.1 117 552-686 13-133 (142)
221 PF13424 TPR_12: Tetratricopep 96.8 0.0045 9.8E-08 46.8 6.8 62 619-680 7-74 (78)
222 PF13371 TPR_9: Tetratricopept 96.8 0.008 1.7E-07 44.7 8.1 54 558-611 4-58 (73)
223 PF04840 Vps16_C: Vps16, C-ter 96.7 0.71 1.5E-05 45.6 30.8 105 377-501 180-284 (319)
224 KOG4555 TPR repeat-containing 96.7 0.038 8.2E-07 44.7 10.9 92 590-682 51-145 (175)
225 PF03704 BTAD: Bacterial trans 96.6 0.13 2.8E-06 44.6 15.4 70 584-654 64-138 (146)
226 COG1729 Uncharacterized protei 96.6 0.033 7.1E-07 51.9 11.8 96 516-612 144-245 (262)
227 KOG0543 FKBP-type peptidyl-pro 96.6 0.037 8.1E-07 54.3 12.5 96 515-611 258-355 (397)
228 KOG1258 mRNA processing protei 96.6 1.2 2.6E-05 46.5 36.4 123 479-602 297-420 (577)
229 KOG2610 Uncharacterized conser 96.6 0.054 1.2E-06 51.4 12.8 114 492-607 116-234 (491)
230 KOG1941 Acetylcholine receptor 96.6 0.16 3.4E-06 48.9 15.9 227 419-645 16-274 (518)
231 PF13424 TPR_12: Tetratricopep 96.5 0.015 3.3E-07 43.9 7.7 25 552-576 8-32 (78)
232 PF13281 DUF4071: Domain of un 96.5 0.6 1.3E-05 46.6 20.4 163 519-683 146-336 (374)
233 KOG2280 Vacuolar assembly/sort 96.4 1.7 3.6E-05 46.6 29.8 113 443-574 683-795 (829)
234 COG4785 NlpI Lipoprotein NlpI, 96.4 0.42 9.1E-06 42.8 16.7 178 495-682 81-267 (297)
235 PF13512 TPR_18: Tetratricopep 96.4 0.076 1.7E-06 44.5 11.7 79 515-594 12-94 (142)
236 COG4105 ComL DNA uptake lipopr 96.4 0.81 1.7E-05 42.6 21.4 52 456-507 46-99 (254)
237 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.019 4.2E-07 57.7 9.0 101 579-683 71-176 (453)
238 PLN03098 LPA1 LOW PSII ACCUMUL 96.3 0.031 6.6E-07 56.3 10.2 66 546-611 72-141 (453)
239 COG3898 Uncharacterized membra 96.3 1.3 2.9E-05 43.4 31.9 266 338-615 117-396 (531)
240 COG4105 ComL DNA uptake lipopr 96.1 1.2 2.7E-05 41.3 22.1 181 486-684 41-236 (254)
241 KOG4234 TPR repeat-containing 96.0 0.1 2.3E-06 45.8 10.7 94 556-652 102-201 (271)
242 KOG1941 Acetylcholine receptor 95.9 0.63 1.4E-05 45.0 16.3 227 384-610 16-274 (518)
243 COG0457 NrfG FOG: TPR repeat [ 95.9 1.5 3.3E-05 41.1 33.0 200 444-645 59-264 (291)
244 KOG4555 TPR repeat-containing 95.9 0.16 3.4E-06 41.3 10.4 89 523-612 52-145 (175)
245 COG3118 Thioredoxin domain-con 95.9 0.47 1E-05 44.9 15.1 141 523-666 143-286 (304)
246 PF04184 ST7: ST7 protein; In 95.9 1 2.2E-05 46.0 18.3 17 670-686 364-380 (539)
247 PF10300 DUF3808: Protein of u 95.9 0.52 1.1E-05 49.7 17.6 175 428-608 176-373 (468)
248 PF04840 Vps16_C: Vps16, C-ter 95.9 2.1 4.6E-05 42.3 29.0 101 522-640 185-285 (319)
249 PF08631 SPO22: Meiosis protei 95.8 2.1 4.5E-05 41.8 26.4 188 491-679 47-273 (278)
250 KOG1920 IkappaB kinase complex 95.8 3.5 7.6E-05 46.7 23.4 155 458-644 894-1053(1265)
251 KOG2396 HAT (Half-A-TPR) repea 95.8 2.7 5.9E-05 42.9 41.1 78 136-215 100-178 (568)
252 COG2976 Uncharacterized protei 95.8 0.69 1.5E-05 40.9 14.6 93 588-682 95-189 (207)
253 PF03704 BTAD: Bacterial trans 95.7 0.14 3E-06 44.4 10.7 70 551-620 64-139 (146)
254 KOG2114 Vacuolar assembly/sort 95.6 4.3 9.2E-05 44.2 28.1 119 143-273 336-458 (933)
255 smart00299 CLH Clathrin heavy 95.6 0.93 2E-05 38.8 15.5 131 103-257 5-136 (140)
256 KOG2280 Vacuolar assembly/sort 95.6 4.1 8.8E-05 43.8 32.0 323 333-675 426-793 (829)
257 KOG2114 Vacuolar assembly/sort 95.4 5.2 0.00011 43.6 25.5 153 143-307 285-457 (933)
258 PF12921 ATP13: Mitochondrial 95.3 0.49 1.1E-05 39.3 11.9 51 510-560 48-99 (126)
259 PF13428 TPR_14: Tetratricopep 95.2 0.047 1E-06 35.6 4.7 30 552-581 4-33 (44)
260 PF12921 ATP13: Mitochondrial 95.2 0.23 5E-06 41.3 9.8 54 333-386 46-100 (126)
261 PF04184 ST7: ST7 protein; In 95.2 1.8 3.9E-05 44.2 17.3 59 550-608 260-321 (539)
262 COG3118 Thioredoxin domain-con 95.0 3.3 7.2E-05 39.4 18.2 142 488-631 143-286 (304)
263 smart00299 CLH Clathrin heavy 95.0 2 4.4E-05 36.7 15.8 84 484-575 12-95 (140)
264 PF13428 TPR_14: Tetratricopep 94.9 0.11 2.4E-06 33.8 5.7 39 584-623 3-41 (44)
265 COG4649 Uncharacterized protei 94.7 2.1 4.5E-05 37.1 13.8 121 525-645 69-195 (221)
266 KOG1550 Extracellular protein 94.7 8 0.00017 42.0 25.2 178 320-509 228-427 (552)
267 COG4649 Uncharacterized protei 94.6 2.5 5.4E-05 36.6 14.1 133 549-682 59-197 (221)
268 KOG1585 Protein required for f 94.6 3.7 7.9E-05 37.8 18.2 53 622-675 195-250 (308)
269 KOG2610 Uncharacterized conser 94.6 1.3 2.8E-05 42.5 13.8 153 421-575 115-273 (491)
270 PF04053 Coatomer_WDAD: Coatom 94.5 0.83 1.8E-05 47.4 13.8 128 111-272 301-428 (443)
271 KOG4234 TPR repeat-containing 94.3 1.5 3.2E-05 38.9 12.5 91 521-612 102-198 (271)
272 KOG1586 Protein required for f 94.2 4.5 9.7E-05 37.0 18.1 180 454-651 24-227 (288)
273 PF09205 DUF1955: Domain of un 94.1 2.8 6E-05 34.5 15.2 136 526-683 14-151 (161)
274 KOG3941 Intermediate in Toll s 94.0 0.49 1.1E-05 44.1 9.5 105 442-565 65-174 (406)
275 KOG3941 Intermediate in Toll s 93.9 0.5 1.1E-05 44.1 9.3 31 265-295 142-172 (406)
276 PF02259 FAT: FAT domain; Int 93.9 8.4 0.00018 39.1 25.1 65 478-542 145-212 (352)
277 PF04053 Coatomer_WDAD: Coatom 93.8 2.2 4.9E-05 44.3 15.3 74 489-577 328-401 (443)
278 PF13431 TPR_17: Tetratricopep 93.7 0.074 1.6E-06 32.3 2.7 28 574-601 4-32 (34)
279 PF13170 DUF4003: Protein of u 93.6 7.9 0.00017 37.9 19.5 134 227-381 78-224 (297)
280 PF09205 DUF1955: Domain of un 93.5 3.7 8.1E-05 33.8 15.8 56 521-577 93-148 (161)
281 KOG1258 mRNA processing protei 93.4 12 0.00026 39.4 37.4 115 122-239 62-179 (577)
282 COG2976 Uncharacterized protei 93.4 5.5 0.00012 35.4 15.0 88 557-646 97-188 (207)
283 KOG1585 Protein required for f 93.3 6.7 0.00014 36.2 16.8 47 318-366 72-118 (308)
284 PF06552 TOM20_plant: Plant sp 93.2 0.76 1.6E-05 40.1 8.9 42 633-682 96-137 (186)
285 PF13431 TPR_17: Tetratricopep 93.0 0.15 3.2E-06 30.9 3.3 32 605-637 2-33 (34)
286 PF09613 HrpB1_HrpK: Bacterial 92.9 5.7 0.00012 34.3 13.8 50 561-610 22-72 (160)
287 KOG1464 COP9 signalosome, subu 92.9 8.2 0.00018 36.1 16.1 191 492-682 40-261 (440)
288 PF13174 TPR_6: Tetratricopept 92.8 0.21 4.5E-06 29.9 3.8 30 655-684 3-32 (33)
289 KOG4648 Uncharacterized conser 92.7 0.42 9.1E-06 45.8 7.2 94 556-652 104-198 (536)
290 PF13176 TPR_7: Tetratricopept 92.7 0.27 5.9E-06 30.3 4.2 25 655-679 2-26 (36)
291 PF00515 TPR_1: Tetratricopept 92.5 0.28 6.1E-06 29.6 4.1 26 656-681 5-30 (34)
292 PF07719 TPR_2: Tetratricopept 92.4 0.41 8.9E-06 28.8 4.7 30 654-683 3-32 (34)
293 PF09613 HrpB1_HrpK: Bacterial 92.3 6.4 0.00014 34.0 13.1 56 526-583 22-78 (160)
294 KOG4648 Uncharacterized conser 92.1 1.1 2.4E-05 43.1 9.1 94 520-614 103-197 (536)
295 PF00515 TPR_1: Tetratricopept 92.0 0.45 9.8E-06 28.7 4.5 30 551-580 3-32 (34)
296 PF08631 SPO22: Meiosis protei 91.9 13 0.00028 36.2 26.9 20 590-609 254-273 (278)
297 KOG1920 IkappaB kinase complex 91.7 30 0.00064 39.8 27.4 102 455-576 950-1053(1265)
298 PF13176 TPR_7: Tetratricopept 91.6 0.39 8.4E-06 29.6 3.9 27 619-645 1-27 (36)
299 COG3629 DnrI DNA-binding trans 91.4 2.1 4.6E-05 40.9 10.4 60 550-609 154-214 (280)
300 COG4785 NlpI Lipoprotein NlpI, 91.4 2.6 5.7E-05 37.9 10.1 87 524-612 75-163 (297)
301 PF10345 Cohesin_load: Cohesin 91.3 27 0.00058 38.6 40.7 173 178-367 61-253 (608)
302 PF07719 TPR_2: Tetratricopept 91.3 0.58 1.3E-05 28.1 4.5 29 552-580 4-32 (34)
303 COG1747 Uncharacterized N-term 91.2 20 0.00044 37.0 22.5 177 476-660 63-247 (711)
304 COG3629 DnrI DNA-binding trans 91.1 2.6 5.6E-05 40.3 10.6 61 516-577 155-215 (280)
305 COG2909 MalT ATP-dependent tra 90.9 30 0.00066 38.5 24.9 221 454-677 425-684 (894)
306 PF07035 Mic1: Colon cancer-as 90.3 12 0.00026 32.8 15.5 23 402-424 22-44 (167)
307 PRK09687 putative lyase; Provi 90.2 19 0.00041 35.0 26.5 124 548-683 141-265 (280)
308 PF10602 RPN7: 26S proteasome 89.9 5.9 0.00013 35.4 11.4 62 516-577 38-101 (177)
309 PF02284 COX5A: Cytochrome c o 89.7 7.7 0.00017 30.4 10.0 60 532-591 28-88 (108)
310 KOG4570 Uncharacterized conser 89.6 5.9 0.00013 37.9 11.3 103 439-543 59-164 (418)
311 PF13929 mRNA_stabil: mRNA sta 89.1 19 0.00042 34.5 14.4 136 156-291 143-288 (292)
312 PF10602 RPN7: 26S proteasome 88.9 12 0.00026 33.5 12.6 94 583-678 37-139 (177)
313 PF06552 TOM20_plant: Plant sp 88.9 9.8 0.00021 33.5 11.3 25 569-593 55-80 (186)
314 PF07035 Mic1: Colon cancer-as 88.5 17 0.00036 32.0 15.5 100 501-608 16-115 (167)
315 TIGR02561 HrpB1_HrpK type III 88.3 15 0.00032 31.3 14.5 51 561-611 22-73 (153)
316 KOG4507 Uncharacterized conser 88.2 2.9 6.3E-05 43.4 9.0 98 595-693 620-717 (886)
317 PF13170 DUF4003: Protein of u 88.2 27 0.0006 34.2 20.9 136 262-416 78-224 (297)
318 PF13174 TPR_6: Tetratricopept 87.1 1.1 2.4E-05 26.6 3.5 26 555-580 6-31 (33)
319 cd00923 Cyt_c_Oxidase_Va Cytoc 86.9 6.4 0.00014 30.4 7.9 62 529-590 22-84 (103)
320 PF07575 Nucleopor_Nup85: Nup8 86.9 51 0.0011 36.1 18.4 26 141-167 149-174 (566)
321 KOG0551 Hsp90 co-chaperone CNS 86.9 5.6 0.00012 38.5 9.4 95 584-680 83-181 (390)
322 PF13181 TPR_8: Tetratricopept 86.8 1.3 2.9E-05 26.5 3.8 30 654-683 3-32 (34)
323 KOG0890 Protein kinase of the 86.6 1E+02 0.0022 38.9 37.3 152 110-270 1388-1542(2382)
324 PF00637 Clathrin: Region in C 86.5 0.12 2.6E-06 44.5 -1.5 83 218-307 14-96 (143)
325 KOG4570 Uncharacterized conser 86.5 3.7 8E-05 39.2 8.0 100 136-239 59-163 (418)
326 PF10345 Cohesin_load: Cohesin 86.2 59 0.0013 36.0 44.5 190 490-680 372-605 (608)
327 PF04097 Nic96: Nup93/Nic96; 86.0 60 0.0013 35.8 20.2 41 252-293 117-157 (613)
328 PF13374 TPR_10: Tetratricopep 85.8 2 4.2E-05 27.2 4.4 29 653-681 3-31 (42)
329 PRK15180 Vi polysaccharide bio 85.2 48 0.001 34.0 30.6 117 188-308 301-418 (831)
330 KOG3364 Membrane protein invol 85.2 14 0.0003 30.8 9.6 66 546-611 29-100 (149)
331 KOG2471 TPR repeat-containing 85.0 38 0.00083 34.9 14.5 108 557-665 248-382 (696)
332 PF09986 DUF2225: Uncharacteri 84.9 18 0.00039 33.4 11.8 67 620-686 121-199 (214)
333 KOG0276 Vesicle coat complex C 84.4 9 0.0002 40.2 10.2 29 338-366 665-693 (794)
334 cd00923 Cyt_c_Oxidase_Va Cytoc 84.4 7.8 0.00017 30.0 7.4 46 427-472 25-70 (103)
335 PF13181 TPR_8: Tetratricopept 84.4 2 4.4E-05 25.6 3.8 26 552-577 4-29 (34)
336 PF04097 Nic96: Nup93/Nic96; 84.2 73 0.0016 35.2 25.2 87 347-438 266-356 (613)
337 PF02284 COX5A: Cytochrome c o 84.0 17 0.00038 28.5 9.1 45 194-238 28-72 (108)
338 PF04190 DUF410: Protein of un 83.9 42 0.00091 32.3 16.2 82 581-681 89-170 (260)
339 PRK09687 putative lyase; Provi 83.7 45 0.00097 32.5 28.2 137 512-662 140-277 (280)
340 KOG2063 Vacuolar assembly/sort 83.7 77 0.0017 36.1 17.7 37 489-525 601-637 (877)
341 COG4455 ImpE Protein of avirul 83.6 8.7 0.00019 34.8 8.5 56 485-541 7-62 (273)
342 PF11207 DUF2989: Protein of u 83.6 12 0.00026 33.7 9.5 72 496-568 123-197 (203)
343 TIGR02561 HrpB1_HrpK type III 83.6 26 0.00057 29.8 10.9 53 527-581 23-76 (153)
344 KOG1550 Extracellular protein 83.5 73 0.0016 34.7 28.1 178 355-544 228-427 (552)
345 PF13374 TPR_10: Tetratricopep 82.7 3 6.5E-05 26.3 4.3 28 618-645 3-30 (42)
346 KOG3364 Membrane protein invol 82.6 17 0.00037 30.3 9.1 67 579-645 29-99 (149)
347 COG4455 ImpE Protein of avirul 82.0 9.7 0.00021 34.5 8.2 127 551-687 3-140 (273)
348 PF02259 FAT: FAT domain; Int 81.9 61 0.0013 32.7 28.5 63 410-472 147-212 (352)
349 COG1747 Uncharacterized N-term 81.8 70 0.0015 33.3 25.7 179 440-626 62-248 (711)
350 PF11207 DUF2989: Protein of u 81.5 14 0.00031 33.3 9.2 76 560-637 118-198 (203)
351 COG3947 Response regulator con 80.9 54 0.0012 31.4 15.4 71 585-656 282-357 (361)
352 KOG4642 Chaperone-dependent E3 80.5 30 0.00065 32.1 10.9 116 489-608 20-143 (284)
353 KOG0276 Vesicle coat complex C 80.2 39 0.00085 35.8 12.8 129 110-272 619-747 (794)
354 KOG4507 Uncharacterized conser 79.7 7.4 0.00016 40.6 7.6 85 561-646 619-705 (886)
355 TIGR03504 FimV_Cterm FimV C-te 79.2 4.3 9.3E-05 26.3 3.9 26 657-682 4-29 (44)
356 PF08424 NRDE-2: NRDE-2, neces 79.2 72 0.0016 31.9 20.9 78 531-609 48-129 (321)
357 PF00244 14-3-3: 14-3-3 protei 79.1 29 0.00063 32.7 11.1 57 485-541 7-64 (236)
358 PF07163 Pex26: Pex26 protein; 78.7 27 0.00059 33.2 10.3 85 556-640 90-181 (309)
359 COG3947 Response regulator con 77.5 70 0.0015 30.8 15.0 57 552-608 282-339 (361)
360 smart00028 TPR Tetratricopepti 77.2 5.4 0.00012 22.6 4.0 29 654-682 3-31 (34)
361 KOG4642 Chaperone-dependent E3 76.9 53 0.0012 30.5 11.3 86 523-610 19-106 (284)
362 KOG4077 Cytochrome c oxidase, 76.2 22 0.00049 29.1 7.8 59 532-590 67-126 (149)
363 PRK15180 Vi polysaccharide bio 76.2 1E+02 0.0022 31.9 32.1 117 119-240 303-420 (831)
364 KOG2062 26S proteasome regulat 75.7 1.3E+02 0.0028 33.0 30.1 159 111-275 65-239 (929)
365 PF07163 Pex26: Pex26 protein; 75.0 38 0.00083 32.2 10.2 20 558-577 127-146 (309)
366 PRK10941 hypothetical protein; 74.9 17 0.00036 35.0 8.3 64 622-687 186-250 (269)
367 PF00637 Clathrin: Region in C 74.0 1.9 4.2E-05 36.9 1.7 53 147-199 13-65 (143)
368 PF10579 Rapsyn_N: Rapsyn N-te 73.9 8.7 0.00019 28.5 4.6 46 629-674 18-65 (80)
369 KOG0545 Aryl-hydrocarbon recep 73.3 43 0.00094 31.2 9.8 94 551-645 180-292 (329)
370 PF14853 Fis1_TPR_C: Fis1 C-te 73.3 8.1 0.00018 26.3 4.2 28 623-652 7-34 (53)
371 PRK12798 chemotaxis protein; R 72.7 1.2E+02 0.0025 31.1 21.0 153 457-612 125-287 (421)
372 PF09986 DUF2225: Uncharacteri 72.5 67 0.0015 29.7 11.4 26 621-646 169-194 (214)
373 smart00028 TPR Tetratricopepti 71.9 7 0.00015 22.1 3.5 23 587-609 6-28 (34)
374 PRK10941 hypothetical protein; 71.1 58 0.0013 31.4 11.0 58 554-611 186-244 (269)
375 KOG1308 Hsp70-interacting prot 70.9 2.9 6.4E-05 40.5 2.2 120 560-682 125-245 (377)
376 KOG2063 Vacuolar assembly/sort 70.4 2E+02 0.0044 32.9 21.8 116 143-258 506-638 (877)
377 TIGR03504 FimV_Cterm FimV C-te 70.3 10 0.00022 24.6 3.9 23 588-610 5-27 (44)
378 PF07575 Nucleopor_Nup85: Nup8 70.1 1.7E+02 0.0038 32.0 18.6 24 629-652 507-530 (566)
379 KOG0376 Serine-threonine phosp 69.7 9.8 0.00021 38.9 5.6 87 522-610 12-100 (476)
380 PF10579 Rapsyn_N: Rapsyn N-te 69.4 18 0.00038 26.9 5.4 42 562-603 19-64 (80)
381 COG2909 MalT ATP-dependent tra 69.1 2.1E+02 0.0045 32.4 29.1 227 348-574 424-684 (894)
382 KOG1308 Hsp70-interacting prot 68.8 3.6 7.7E-05 39.9 2.3 85 492-579 127-212 (377)
383 KOG1586 Protein required for f 68.7 1E+02 0.0022 28.7 23.3 113 486-613 100-226 (288)
384 KOG0890 Protein kinase of the 68.5 3.4E+02 0.0073 34.7 34.9 121 340-468 1421-1542(2382)
385 PF07721 TPR_4: Tetratricopept 68.5 8.7 0.00019 21.4 3.0 7 595-601 14-20 (26)
386 PF13762 MNE1: Mitochondrial s 67.7 78 0.0017 27.0 12.3 80 179-258 42-127 (145)
387 KOG0292 Vesicle coat complex C 67.1 2.2E+02 0.0049 32.1 24.7 101 110-238 625-725 (1202)
388 KOG2471 TPR repeat-containing 66.8 1.7E+02 0.0036 30.5 16.7 106 454-561 250-381 (696)
389 PF12862 Apc5: Anaphase-promot 65.8 34 0.00074 26.6 7.0 24 658-681 47-70 (94)
390 PHA02875 ankyrin repeat protei 65.6 1.7E+02 0.0038 30.3 15.1 184 345-549 38-230 (413)
391 KOG2066 Vacuolar assembly/sort 65.3 2.3E+02 0.0049 31.5 29.5 73 218-296 363-438 (846)
392 PF14853 Fis1_TPR_C: Fis1 C-te 65.2 41 0.00089 22.9 6.2 29 554-582 6-34 (53)
393 COG5159 RPN6 26S proteasome re 64.4 1.4E+02 0.003 28.7 18.4 212 414-625 8-251 (421)
394 PF14561 TPR_20: Tetratricopep 64.3 65 0.0014 24.9 8.8 29 583-611 23-51 (90)
395 KOG1464 COP9 signalosome, subu 64.1 1.3E+02 0.0029 28.4 21.3 141 483-631 149-318 (440)
396 KOG0376 Serine-threonine phosp 63.7 12 0.00027 38.2 5.0 105 555-662 10-115 (476)
397 KOG2396 HAT (Half-A-TPR) repea 62.7 2E+02 0.0044 30.1 42.2 94 583-680 461-558 (568)
398 PF13929 mRNA_stabil: mRNA sta 62.6 1.5E+02 0.0033 28.6 24.4 114 390-503 144-262 (292)
399 KOG2297 Predicted translation 61.2 1.6E+02 0.0036 28.5 19.6 21 479-499 321-341 (412)
400 PF11846 DUF3366: Domain of un 60.3 26 0.00055 31.9 6.3 51 119-169 122-172 (193)
401 COG0790 FOG: TPR repeat, SEL1 60.1 1.7E+02 0.0038 28.5 24.3 83 529-612 128-221 (292)
402 PF09670 Cas_Cas02710: CRISPR- 59.0 1.2E+02 0.0026 31.1 11.4 57 486-543 138-198 (379)
403 KOG3807 Predicted membrane pro 58.2 1.9E+02 0.0041 28.3 19.0 52 555-606 281-335 (556)
404 TIGR02508 type_III_yscG type I 57.3 94 0.002 24.5 8.3 13 491-503 51-63 (115)
405 KOG4521 Nuclear pore complex, 57.0 2.6E+02 0.0056 32.8 13.7 77 517-598 986-1070(1480)
406 PF04910 Tcf25: Transcriptiona 56.7 2.3E+02 0.005 28.8 23.8 57 521-577 110-167 (360)
407 PF09670 Cas_Cas02710: CRISPR- 56.2 1.5E+02 0.0032 30.4 11.5 57 521-578 138-198 (379)
408 KOG0686 COP9 signalosome, subu 56.2 2.4E+02 0.0051 28.8 13.0 94 480-575 151-255 (466)
409 PF08424 NRDE-2: NRDE-2, neces 56.2 2.2E+02 0.0048 28.4 19.2 115 497-613 49-185 (321)
410 PHA02875 ankyrin repeat protei 55.9 2.6E+02 0.0055 29.1 13.9 77 384-468 9-89 (413)
411 KOG4077 Cytochrome c oxidase, 55.7 82 0.0018 26.0 7.3 44 430-473 70-113 (149)
412 PF08311 Mad3_BUB1_I: Mad3/BUB 55.1 1E+02 0.0022 25.6 8.4 44 635-678 81-125 (126)
413 COG0790 FOG: TPR repeat, SEL1 54.3 2.2E+02 0.0047 27.8 25.1 98 494-596 128-236 (292)
414 TIGR02508 type_III_yscG type I 54.3 1.1E+02 0.0023 24.2 8.9 87 424-518 20-106 (115)
415 PF04910 Tcf25: Transcriptiona 53.0 2.7E+02 0.0058 28.4 18.7 94 587-682 108-223 (360)
416 PF10366 Vps39_1: Vacuolar sor 52.8 1.2E+02 0.0026 24.4 8.9 27 341-367 41-67 (108)
417 KOG3807 Predicted membrane pro 52.2 1.4E+02 0.0031 29.1 9.6 109 561-680 228-339 (556)
418 KOG2659 LisH motif-containing 51.1 1.8E+02 0.0038 27.1 9.6 18 185-202 73-90 (228)
419 PF10255 Paf67: RNA polymerase 50.7 1.8E+02 0.0039 29.9 10.8 59 587-645 127-192 (404)
420 PF11846 DUF3366: Domain of un 49.9 79 0.0017 28.7 7.7 35 546-580 141-175 (193)
421 PF10446 DUF2457: Protein of u 49.9 8.1 0.00018 38.9 1.2 7 110-116 195-201 (458)
422 PF03474 DMA: DMRTA motif; In 49.5 46 0.00099 20.9 3.9 32 97-128 6-38 (39)
423 PF14689 SPOB_a: Sensor_kinase 49.2 41 0.00089 23.8 4.4 24 657-680 28-51 (62)
424 PF14561 TPR_20: Tetratricopep 48.0 1.3E+02 0.0028 23.3 8.9 64 605-669 11-75 (90)
425 PF11848 DUF3368: Domain of un 47.5 75 0.0016 21.0 5.1 34 151-184 12-45 (48)
426 PF13762 MNE1: Mitochondrial s 47.3 1.8E+02 0.004 24.9 11.7 49 409-457 79-128 (145)
427 KOG0292 Vesicle coat complex C 46.4 5E+02 0.011 29.6 23.2 121 259-402 606-726 (1202)
428 cd00280 TRFH Telomeric Repeat 46.2 1.5E+02 0.0032 26.5 7.9 22 589-610 118-139 (200)
429 KOG2422 Uncharacterized conser 45.9 4.1E+02 0.0089 28.5 20.6 54 522-575 350-404 (665)
430 COG5187 RPN7 26S proteasome re 45.9 2.9E+02 0.0062 26.7 13.9 98 479-578 115-221 (412)
431 KOG0551 Hsp90 co-chaperone CNS 45.9 1.6E+02 0.0035 29.1 8.9 84 523-606 90-177 (390)
432 smart00777 Mad3_BUB1_I Mad3/BU 45.6 1.8E+02 0.0038 24.2 9.4 43 634-676 80-123 (125)
433 PF08311 Mad3_BUB1_I: Mad3/BUB 45.1 1.8E+02 0.0039 24.2 8.4 42 600-641 81-123 (126)
434 PF14689 SPOB_a: Sensor_kinase 44.7 52 0.0011 23.2 4.3 21 520-540 29-49 (62)
435 PF13934 ELYS: Nuclear pore co 44.7 2.7E+02 0.0058 26.1 14.5 85 552-645 79-168 (226)
436 PF12968 DUF3856: Domain of Un 44.5 1.8E+02 0.0038 23.9 8.2 62 619-680 57-128 (144)
437 PF04190 DUF410: Protein of un 44.2 3E+02 0.0065 26.5 18.9 27 442-468 88-114 (260)
438 PF05764 YL1: YL1 nuclear prot 44.2 16 0.00035 34.5 2.2 6 10-15 42-47 (240)
439 PRK11619 lytic murein transgly 44.0 5E+02 0.011 29.0 40.6 203 352-574 254-464 (644)
440 smart00386 HAT HAT (Half-A-TPR 43.9 58 0.0013 18.5 4.1 8 601-608 6-13 (33)
441 PRK11619 lytic murein transgly 43.9 5E+02 0.011 29.0 41.4 207 387-607 254-464 (644)
442 COG5191 Uncharacterized conser 43.4 76 0.0016 30.8 6.3 73 513-586 106-180 (435)
443 KOG0545 Aryl-hydrocarbon recep 43.1 2.9E+02 0.0063 26.0 12.7 61 520-581 236-296 (329)
444 PF00244 14-3-3: 14-3-3 protei 42.9 3E+02 0.0064 26.0 11.4 55 415-469 7-62 (236)
445 COG5159 RPN6 26S proteasome re 42.7 3.2E+02 0.0069 26.4 22.9 22 378-399 129-150 (421)
446 PF12862 Apc5: Anaphase-promot 41.6 1.6E+02 0.0035 22.8 7.2 22 589-610 48-69 (94)
447 PF11817 Foie-gras_1: Foie gra 41.1 1.4E+02 0.0029 28.5 8.0 22 587-608 183-204 (247)
448 KOG2659 LisH motif-containing 41.1 3E+02 0.0065 25.6 10.8 101 545-645 22-131 (228)
449 PF15297 CKAP2_C: Cytoskeleton 40.9 3E+02 0.0065 27.5 10.0 62 566-627 120-185 (353)
450 KOG4814 Uncharacterized conser 40.8 2.7E+02 0.0058 30.3 10.2 85 560-645 365-456 (872)
451 PF11848 DUF3368: Domain of un 40.1 1.1E+02 0.0024 20.2 5.2 31 421-451 14-44 (48)
452 PF10516 SHNi-TPR: SHNi-TPR; 39.9 74 0.0016 19.9 3.9 28 653-680 2-29 (38)
453 KOG2034 Vacuolar sorting prote 39.3 6.3E+02 0.014 28.8 31.0 134 342-494 507-643 (911)
454 KOG4521 Nuclear pore complex, 38.8 7.3E+02 0.016 29.4 16.3 139 551-695 985-1146(1480)
455 PF04762 IKI3: IKI3 family; I 38.2 7.1E+02 0.015 29.3 14.4 114 549-678 812-927 (928)
456 PF11663 Toxin_YhaV: Toxin wit 38.1 36 0.00079 28.3 3.0 29 225-255 109-137 (140)
457 KOG4567 GTPase-activating prot 37.9 3.9E+02 0.0084 26.2 9.9 41 431-471 265-305 (370)
458 PF02184 HAT: HAT (Half-A-TPR) 36.8 83 0.0018 18.8 3.5 19 566-584 4-22 (32)
459 PRK13800 putative oxidoreducta 36.7 7.6E+02 0.017 29.0 30.1 249 407-682 633-882 (897)
460 KOG4814 Uncharacterized conser 36.6 2.7E+02 0.0059 30.2 9.5 94 516-611 357-457 (872)
461 PF04781 DUF627: Protein of un 36.0 2.3E+02 0.0051 22.9 7.5 86 588-681 2-100 (111)
462 COG0735 Fur Fe2+/Zn2+ uptake r 35.7 1.9E+02 0.0042 24.7 7.3 45 146-190 25-69 (145)
463 KOG0403 Neoplastic transformat 35.0 5.4E+02 0.012 26.7 26.7 64 585-649 512-575 (645)
464 PF12253 CAF1A: Chromatin asse 34.9 25 0.00055 26.1 1.5 14 23-36 52-65 (77)
465 COG0735 Fur Fe2+/Zn2+ uptake r 34.8 2.2E+02 0.0047 24.4 7.5 61 327-388 9-69 (145)
466 COG5108 RPO41 Mitochondrial DN 34.6 2.5E+02 0.0055 30.5 9.0 75 414-491 33-115 (1117)
467 KOG2581 26S proteasome regulat 34.5 5.2E+02 0.011 26.5 15.7 26 477-504 67-92 (493)
468 COG4976 Predicted methyltransf 33.0 77 0.0017 29.3 4.5 57 558-614 4-61 (287)
469 PF11817 Foie-gras_1: Foie gra 32.8 2.5E+02 0.0055 26.7 8.4 61 619-679 180-245 (247)
470 KOG1839 Uncharacterized protei 32.5 4E+02 0.0088 31.7 10.9 156 522-677 940-1124(1236)
471 KOG0687 26S proteasome regulat 32.5 5.1E+02 0.011 25.7 15.4 25 583-607 105-129 (393)
472 KOG2297 Predicted translation 32.4 4.9E+02 0.011 25.5 18.4 22 514-535 321-342 (412)
473 COG4259 Uncharacterized protei 32.0 2.5E+02 0.0055 22.1 6.6 51 534-584 57-107 (121)
474 PRK13342 recombination factor 31.9 6.1E+02 0.013 26.4 19.7 35 492-526 243-277 (413)
475 COG4976 Predicted methyltransf 31.2 1.1E+02 0.0023 28.4 5.0 58 523-581 4-61 (287)
476 PRK10564 maltose regulon perip 31.2 96 0.0021 30.1 5.1 30 482-511 260-289 (303)
477 cd08819 CARD_MDA5_2 Caspase ac 31.0 2.5E+02 0.0053 21.6 7.4 61 533-597 21-81 (88)
478 PF11663 Toxin_YhaV: Toxin wit 30.8 63 0.0014 27.0 3.3 31 153-185 107-137 (140)
479 PTZ00415 transmission-blocking 30.4 23 0.0005 42.3 1.0 33 13-45 137-178 (2849)
480 COG5108 RPO41 Mitochondrial DN 30.3 3.3E+02 0.0073 29.7 9.0 74 344-420 33-114 (1117)
481 cd08780 Death_TRADD Death Doma 30.1 2.1E+02 0.0046 21.9 5.6 53 553-605 36-88 (90)
482 KOG1839 Uncharacterized protei 30.0 6.6E+02 0.014 30.1 12.0 153 489-641 942-1123(1236)
483 PRK10564 maltose regulon perip 29.7 1.1E+02 0.0023 29.9 5.1 43 336-378 253-296 (303)
484 KOG0128 RNA-binding protein SA 29.3 8.9E+02 0.019 27.5 39.4 215 139-368 111-341 (881)
485 KOG0530 Protein farnesyltransf 29.2 5.2E+02 0.011 24.8 14.2 166 524-693 53-228 (318)
486 TIGR00927 2A1904 K+-dependent 29.1 32 0.00068 38.9 1.7 42 13-54 856-897 (1096)
487 PHA02537 M terminase endonucle 29.0 4.9E+02 0.011 24.4 9.3 127 536-684 70-210 (230)
488 PRK12766 50S ribosomal protein 28.9 18 0.00039 33.3 -0.1 26 18-43 58-83 (232)
489 PRK13800 putative oxidoreducta 28.6 1E+03 0.022 28.0 29.2 261 337-627 633-894 (897)
490 smart00546 CUE Domain that may 27.4 1.7E+02 0.0036 18.6 4.3 32 97-128 7-39 (43)
491 KOG4279 Serine/threonine prote 27.3 9.2E+02 0.02 27.1 16.3 231 426-683 145-397 (1226)
492 PF10366 Vps39_1: Vacuolar sor 27.2 3.3E+02 0.0072 21.9 7.5 76 145-226 14-94 (108)
493 PF09454 Vps23_core: Vps23 cor 27.1 1.3E+02 0.0028 21.6 4.0 59 335-394 4-62 (65)
494 KOG3214 Uncharacterized Zn rib 26.9 29 0.00062 26.7 0.7 26 13-38 84-109 (109)
495 PF02845 CUE: CUE domain; Int 26.7 1.7E+02 0.0038 18.5 4.3 32 97-128 6-38 (42)
496 PF10255 Paf67: RNA polymerase 26.3 7.4E+02 0.016 25.6 12.8 218 338-555 74-318 (404)
497 KOG3824 Huntingtin interacting 26.3 1.7E+02 0.0038 28.3 5.7 61 587-650 121-181 (472)
498 TIGR02710 CRISPR-associated pr 26.1 7.3E+02 0.016 25.4 11.6 126 554-680 135-274 (380)
499 PF09090 MIF4G_like_2: MIF4G l 26.0 5.9E+02 0.013 24.3 9.7 115 577-691 6-131 (253)
500 PTZ00415 transmission-blocking 26.0 34 0.00073 41.0 1.3 30 11-40 150-179 (2849)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-68 Score=605.44 Aligned_cols=556 Identities=18% Similarity=0.210 Sum_probs=502.9
Q ss_pred HHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 037695 112 CAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGK 191 (701)
Q Consensus 112 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 191 (701)
...+.+.|+++.|+++|+.+. ..|+.||..+|+.+++++++.+++..+.+++..|.+.|+.|+..+++.++.+|++.|+
T Consensus 159 i~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~ 237 (857)
T PLN03077 159 VGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD 237 (857)
T ss_pred HHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence 344445566666666666543 3366666666666666666666666666666666666777777777888888889999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHH
Q 037695 192 LRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDE 271 (701)
Q Consensus 192 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 271 (701)
++.|..+|+.|. .||..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|+++.|.+++..
T Consensus 238 ~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~ 313 (857)
T PLN03077 238 VVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGY 313 (857)
T ss_pred HHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHH
Confidence 999999999987 6788999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC---------CCCCcHHHHHHHHHHHHHcCCCcCHHHH
Q 037695 272 MPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLF---------HDQGRIEEAKELVNQMSQMGCIPDVVTY 342 (701)
Q Consensus 272 m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 342 (701)
|.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.. .+.. ...|++++|+++|++|.+.|+.||..||
T Consensus 314 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~ 392 (857)
T PLN03077 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI 392 (857)
T ss_pred HHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence 99999999999999999999999999999999999965 2222 2339999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 037695 343 TAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRRE 422 (701)
Q Consensus 343 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 422 (701)
+.++.+|++.|+++.|.+++..|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.
T Consensus 393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLN 468 (857)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999999999999875 7889999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695 423 GKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLL 502 (701)
Q Consensus 423 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 502 (701)
|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++|+|+.+|+++|++++|.++|
T Consensus 469 g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f 547 (857)
T PLN03077 469 NRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF 547 (857)
T ss_pred CCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence 999999999999986 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---C
Q 037695 503 DDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK---Q 579 (701)
Q Consensus 503 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 579 (701)
+.+ .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+. .
T Consensus 548 ~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~ 622 (857)
T PLN03077 548 NSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT 622 (857)
T ss_pred Hhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence 987 68999999999999999999999999999999999999999999999999999999999999999854 4
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHH
Q 037695 580 KCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKV 658 (701)
Q Consensus 580 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l 658 (701)
|+..+|+.++.+|++.|++++|.+++++| ...||..+|.+|+.+|..+|+.+.+...++++.+ +.|+ ...|..+
T Consensus 623 P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll 697 (857)
T PLN03077 623 PNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILL 697 (857)
T ss_pred CchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHH
Confidence 77889999999999999999999999998 4689999999999999999999999999999998 6665 4778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 037695 659 SERLILEGKSEEADTLMLRFVERGHIQPKS 688 (701)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 688 (701)
...|...|+|++|.++.+.|.++|.++.+.
T Consensus 698 ~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 698 CNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred HHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 899999999999999999999999987664
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1e-67 Score=584.48 Aligned_cols=535 Identities=17% Similarity=0.208 Sum_probs=426.8
Q ss_pred HhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 037695 115 LRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRN 194 (701)
Q Consensus 115 l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 194 (701)
+.+.|+++.|+++|+++....-.+++...++.++..|.+.|.+++|..+++.|.. |+..+|+.++.+|++.|+++.
T Consensus 380 l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~ 455 (1060)
T PLN03218 380 LLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDG 455 (1060)
T ss_pred HHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHH
Confidence 3345788888888887765544566777777788888888888888888877753 788888888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchh
Q 037695 195 AMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPL 274 (701)
Q Consensus 195 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (701)
|.++|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|..
T Consensus 456 A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~ 535 (1060)
T PLN03218 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 037695 275 KGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGE 354 (701)
Q Consensus 275 ~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 354 (701)
.|+.||..+|+.+|.+|++.|++++|.++|+.|.. ...|+.||..+|+++|.+|++.|+
T Consensus 536 ~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~---------------------~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKA---------------------ETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------------------hcCCCCCcHHHHHHHHHHHHHCCC
Confidence 88888888888888888887777766666666643 124677888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 355 LDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVRE 434 (701)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 434 (701)
+++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 037695 435 MVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT 514 (701)
Q Consensus 435 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 514 (701)
|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|...|+.||..+||++|.+|++.|++++|.++|++|...|+.||.
T Consensus 675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHh
Q 037695 515 VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCS 594 (701)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 594 (701)
.||+.++.+|++.|++++|.+++.+|.+.|+.||..+|++++..|. +.++++.++.+.+...++. .....
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~g--------~~~~~ 824 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDSG--------RPQIE 824 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhcc--------ccccc
Confidence 8888888888888888888888888888888888888888876553 2455555554443322111 11112
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 037695 595 FGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTL 674 (701)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 674 (701)
.+..+.|..+|++|++.|+.||..+|+.++.++++.+....+..+++.|...+..|+..+|+.+++++.+. .++|..+
T Consensus 825 n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l 902 (1060)
T PLN03218 825 NKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSL 902 (1060)
T ss_pred cchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHH
Confidence 23356799999999999999999999999988888899999999998888888888999999999988432 4689999
Q ss_pred HHHHHHcCCCCC
Q 037695 675 MLRFVERGHIQP 686 (701)
Q Consensus 675 ~~~~~~~~~~~~ 686 (701)
+++|.+.|..+.
T Consensus 903 ~~em~~~Gi~p~ 914 (1060)
T PLN03218 903 LEEAASLGVVPS 914 (1060)
T ss_pred HHHHHHcCCCCC
Confidence 999999997443
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.4e-68 Score=600.97 Aligned_cols=542 Identities=20% Similarity=0.219 Sum_probs=464.2
Q ss_pred HhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 037695 115 LRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRN 194 (701)
Q Consensus 115 l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 194 (701)
+...+....|.+++..+.+ .+..++...+|.++..|++.|+++.|..+|++|. +||..+|+.+|.+|++.|++++
T Consensus 96 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~ 170 (857)
T PLN03077 96 CEWKRAVEEGSRVCSRALS-SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDE 170 (857)
T ss_pred HhhCCCHHHHHHHHHHHHH-cCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHH
Confidence 3445677778887776553 3456777788888888888888888888888885 3677888888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchh
Q 037695 195 AMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPL 274 (701)
Q Consensus 195 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (701)
|..+|++|...|+.||..+|+.++++|+..+++..+.+++..|.+.|+.|+..+||.||.+|++.|+++.|.++|++|.
T Consensus 171 A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~- 249 (857)
T PLN03077 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP- 249 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-
Confidence 8888888888888888888888888888888888888888888888888888888888888888888888888888886
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC-------------CcHHHHHHHHHHHHHcCCCcCHHH
Q 037695 275 KGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ-------------GRIEEAKELVNQMSQMGCIPDVVT 341 (701)
Q Consensus 275 ~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------------g~~~~a~~~~~~~~~~~~~p~~~~ 341 (701)
.||.++|+++|.+|++.|++++|.++|..|.. .++.|+. |+.+.|.+++..|.+.|+.||..+
T Consensus 250 ---~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~-~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 250 ---RRDCISWNAMISGYFENGECLEGLELFFTMRE-LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred ---CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 36778888888888888888888888888876 5666664 788888888888888888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 037695 342 YTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRR 421 (701)
Q Consensus 342 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 421 (701)
|++||.+|++.|++++|.++|+.|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus 326 ~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~ 401 (857)
T PLN03077 326 CNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACAC 401 (857)
T ss_pred HHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhc
Confidence 8888888888888888888888876 467788888888888888888888888888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695 422 EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSL 501 (701)
Q Consensus 422 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 501 (701)
.|+++.|.++++.|.+.|+.|+..+++.|+.+|++.|++++|.++|+.|.+ +|..+|++++.+|++.|+.++|+.+
T Consensus 402 ~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 402 LGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred cchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 888888888888888888888888888888888888888888888888754 4777888888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037695 502 LDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC 581 (701)
Q Consensus 502 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 581 (701)
|++|.. ++.||..||+.++.+|++.|..+.+.+++..|.+.|+.++..++++|+.+|++.|++++|.++|+.+ .|+
T Consensus 478 f~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d 553 (857)
T PLN03077 478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKD 553 (857)
T ss_pred HHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCC
Confidence 888875 4788888888888888888888888888888888888888888899999999999999999999988 677
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH-hCCCCCCHhhHHHHHH
Q 037695 582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMF-NRNLIPDLKLCKKVSE 660 (701)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~ 660 (701)
..+|+.++.+|++.|+.++|.++|++|.+.+..||..||+.++.+|.+.|.+++|.++|+.|. +.|+.|+..+|..+++
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999999 6899999999999999
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 037695 661 RLILEGKSEEADTLMLRF 678 (701)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~ 678 (701)
.|.+.|++++|.+++++|
T Consensus 634 ~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHhCCCHHHHHHHHHHC
Confidence 999999999999999987
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-64 Score=557.48 Aligned_cols=506 Identities=18% Similarity=0.258 Sum_probs=464.0
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 037695 138 RHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGI-ECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNT 216 (701)
Q Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 216 (701)
.++...|..++..+.+.|++++|.++|++|.+.|+ +++..+++.++..|.+.|.+.+|..+|+.|. .||..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHH
Confidence 45677899999999999999999999999999986 4678888999999999999999999999997 499999999
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC
Q 037695 217 AIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKR 296 (701)
Q Consensus 217 ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~ 296 (701)
++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCH
Q 037695 297 IKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYH--HGCKPNT 374 (701)
Q Consensus 297 ~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~ 374 (701)
+++|.++|+.| .+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||.
T Consensus 523 ~eeAl~lf~~M-----------------------~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~ 579 (1060)
T PLN03218 523 VAKAFGAYGIM-----------------------RSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579 (1060)
T ss_pred HHHHHHHHHHH-----------------------HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH
Confidence 76666555555 5578999999999999999999999999999999986 6789999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695 375 VSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSL 454 (701)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~ 454 (701)
.+|+++|.+|++.|++++|.++|+.|.+.++.|+..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|
T Consensus 580 vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~ 659 (1060)
T PLN03218 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVA 659 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695 455 CREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEAT 534 (701)
Q Consensus 455 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 534 (701)
++.|++++|.++++.|.+.|+.|+..+|+++|.+|++.|++++|.++|++|...|+.||..+|+.||.+|++.|++++|.
T Consensus 660 ~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAl 739 (1060)
T PLN03218 660 GHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKAL 739 (1060)
T ss_pred HhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 535 ELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ--KCRTAYNQVIENLCSFGYLEEAGKILGKVLRTA 612 (701)
Q Consensus 535 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (701)
++|++|...|+.||..||+.++.+|++.|++++|.+++..|.+.+ |+..+|+.++..|. +++++|..+.+.+....
T Consensus 740 elf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~ 817 (1060)
T PLN03218 740 EVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD 817 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh
Confidence 999999999999999999999999999999999999999999875 56788999986554 35666666655443221
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 613 SKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 613 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
. +......+..++|+.+|++|.+.|+.||..+|..++.++++.+....+..+++.+...+
T Consensus 818 ~----------g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 818 S----------GRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA 877 (1060)
T ss_pred c----------cccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC
Confidence 0 11122233456799999999999999999999999999989999999988888776554
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.5e-61 Score=531.80 Aligned_cols=474 Identities=17% Similarity=0.256 Sum_probs=292.0
Q ss_pred CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037695 139 HDPIVYYMMLEILSKTKLCQGAKRVLRLMARRG-IECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTA 217 (701)
Q Consensus 139 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 217 (701)
.+..+|+.++..+.+.|++++|.++|+.|...+ ..|+..+|+.++.+|++.++++.|.+++..|.+.|+.||..+||.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 344567777777777777777777777776543 4566677777777777777776677777776666666666677777
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCh
Q 037695 218 IHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRI 297 (701)
Q Consensus 218 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~ 297 (701)
+.+|++.|+++.|.++|++|. .||..+||.+|.+|++.|++++|+++|++|.+.|+.||..+|+.++.++++.|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 777777777777777766665 3566666666666666666666666666666666666666666666666655544
Q ss_pred hHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037695 298 KEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSY 377 (701)
Q Consensus 298 ~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 377 (701)
..+.+++. .+.+.|+.||..+|++||.+|++.|++++|.++|+.|. .+|..+|
T Consensus 241 ~~~~~l~~-----------------------~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~ 293 (697)
T PLN03081 241 RAGQQLHC-----------------------CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAW 293 (697)
T ss_pred HHHHHHHH-----------------------HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHH
Confidence 43333333 33345566666666666666666666666666666664 2456666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695 378 TAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE 457 (701)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 457 (701)
+++|.+|++.|++++|.++|++|...|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+..+++.|+.+|++.
T Consensus 294 n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695 458 GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELM 537 (701)
Q Consensus 458 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 537 (701)
|++++|.++|++|.+ ||..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|
T Consensus 374 G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f 449 (697)
T PLN03081 374 GRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIF 449 (697)
T ss_pred CCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 666666666665542 3556666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695 538 MKMLS-KGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD 616 (701)
Q Consensus 538 ~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 616 (701)
+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++|. ..|+..+|+.++.+|+..|+++.|..+++++++..+ .+
T Consensus 450 ~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p-~~ 527 (697)
T PLN03081 450 QSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP-FKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP-EK 527 (697)
T ss_pred HHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC-CC
Confidence 66654 3566666666666666666666666666655543 234445555555555555555555555555543321 13
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 037695 617 ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI 649 (701)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 649 (701)
..+|..|+..|++.|++++|.++++.|.++|+.
T Consensus 528 ~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 445555555555555555555555555555543
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.1e-60 Score=527.83 Aligned_cols=504 Identities=16% Similarity=0.192 Sum_probs=462.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 037695 111 ICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAG 190 (701)
Q Consensus 111 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 190 (701)
+...+...|+++.|+++|.|+....++.||..+|+.++.++.+.++++.+.+++..|.+.|+.|+..+|+.++.+|++.|
T Consensus 93 ~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g 172 (697)
T PLN03081 93 QIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172 (697)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC
Confidence 34455667999999999999987777889999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHH
Q 037695 191 KLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLID 270 (701)
Q Consensus 191 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 270 (701)
+++.|.++|+.|. .||..+||+++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|++.|..+.+.+++.
T Consensus 173 ~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 173 MLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred CHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 9999999999997 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 037695 271 EMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFC 350 (701)
Q Consensus 271 ~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 350 (701)
.+.+.|+.||..+|+.|+.+|++.|++++|.++|+.|. .+|..+||++|.+|+
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---------------------------~~~~vt~n~li~~y~ 301 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---------------------------EKTTVAWNSMLAGYA 301 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---------------------------CCChhHHHHHHHHHH
Confidence 99999999999999999999999999998888888773 368999999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037695 351 RVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACD 430 (701)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 430 (701)
+.|++++|.++|++|...|+.||..||+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.++.+|++.|++++|..
T Consensus 302 ~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~ 381 (697)
T PLN03081 302 LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CC
Q 037695 431 VVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYL-CK 509 (701)
Q Consensus 431 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~ 509 (701)
+|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||++++.+|++.|.+++|.++|+.|.+ .|
T Consensus 382 vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g 457 (697)
T PLN03081 382 VFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHR 457 (697)
T ss_pred HHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcC
Confidence 999995 4788999999999999999999999999999999999999999999999999999999999999985 69
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHH
Q 037695 510 KDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQV 588 (701)
Q Consensus 510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l 588 (701)
+.|+..+|+.++.+|++.|++++|.+++++| ++.|+..+|+.|+.+|...|+++.|..+++++....|. ..+|..+
T Consensus 458 ~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L 534 (697)
T PLN03081 458 IKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVL 534 (697)
T ss_pred CCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHH
Confidence 9999999999999999999999999998876 57899999999999999999999999999999988887 6799999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH---HHHH----hc----CChhhHHHHHHHHHhCCCCCCH
Q 037695 589 IENLCSFGYLEEAGKILGKVLRTASKADA-STCHVLV---ESYL----NK----GIPLLAYKVACRMFNRNLIPDL 652 (701)
Q Consensus 589 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~---~~~~----~~----g~~~~A~~~~~~~~~~~~~p~~ 652 (701)
+.+|++.|++++|.++++.|.+.|....+ .+|..+. ..+. .+ .-++...++..+|.+.|..|+.
T Consensus 535 ~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~ 610 (697)
T PLN03081 535 LNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEE 610 (697)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999875332 2221110 0000 00 1123445667778888888874
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.8e-34 Score=331.02 Aligned_cols=561 Identities=14% Similarity=0.087 Sum_probs=454.9
Q ss_pred HhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 037695 115 LRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRN 194 (701)
Q Consensus 115 l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 194 (701)
+...|+++.|+..|..+.... |.+...+..+..++.+.|+++.|...+..+.... +.++..+..+...+.+.|++++
T Consensus 305 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 305 EYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 344577777777777665543 4556677778888888888888888888887654 4467778888888888888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchh
Q 037695 195 AMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPL 274 (701)
Q Consensus 195 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 274 (701)
|..+|+++.+.. +.+...+..+...+...|++++|...|+.+.... +.+......++..+.+.|++++|.++++.+..
T Consensus 382 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 459 (899)
T TIGR02917 382 AAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEK 459 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 888888887654 4466677777788888888888888888887653 22344566677788888888888888888876
Q ss_pred CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC-----------CCCcHHHHHHHHHHHHHcCCCcCHHHHH
Q 037695 275 KGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFH-----------DQGRIEEAKELVNQMSQMGCIPDVVTYT 343 (701)
Q Consensus 275 ~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 343 (701)
. .+++..++..+...+...|++++|...|+.+....+..+ ..|++++|...++.+.... +.+..++.
T Consensus 460 ~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 537 (899)
T TIGR02917 460 K-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAIL 537 (899)
T ss_pred h-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHH
Confidence 4 345677888889999999999999999998876332222 2388999999999988764 34677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 037695 344 AVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREG 423 (701)
Q Consensus 344 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 423 (701)
.+...+.+.|++++|..++..+...+ +.+...+..++..|...|++++|..+++.+.... +.+...|..+..++...|
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 88999999999999999999987764 4466778888899999999999999999988753 567788889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 424 KLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLD 503 (701)
Q Consensus 424 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 503 (701)
++++|...|+.+.+.. +.+...+..+...+...|++++|..+++.+.+. .+.+..++..++..+...|++++|..+++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALEL-KPDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999988764 456778888889999999999999999998876 35567888899999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-h
Q 037695 504 DMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-R 582 (701)
Q Consensus 504 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~ 582 (701)
.+.... +++...+..+...+...|++++|...|+.+...+ |+..++..++.++.+.|++++|.+.++++.+..|+ .
T Consensus 694 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~ 770 (899)
T TIGR02917 694 SLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDA 770 (899)
T ss_pred HHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 998765 5567788888889999999999999999998864 55577788889999999999999999999988887 6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHH
Q 037695 583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSER 661 (701)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 661 (701)
..+..++..|...|++++|..+|+++++.. +.++.+++.+++.+...|+ .+|+..++++... .|+ ..++..++.+
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~--~~~~~~~~~~~~~~ 846 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL--APNIPAILDTLGWL 846 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh--CCCCcHHHHHHHHH
Confidence 788888999999999999999999998876 4578888999999999999 7899999999884 443 4677788889
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCchHHHHh
Q 037695 662 LILEGKSEEADTLMLRFVERGHIQPKSEEHLQ 693 (701)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 693 (701)
+...|++++|.++++++++.++..+....++.
T Consensus 847 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~ 878 (899)
T TIGR02917 847 LVEKGEADRALPLLRKAVNIAPEAAAIRYHLA 878 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 99999999999999999999887666655543
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.9e-34 Score=330.95 Aligned_cols=553 Identities=13% Similarity=0.042 Sum_probs=483.0
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 037695 111 ICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAG 190 (701)
Q Consensus 111 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 190 (701)
+..++...|+++.|+..+..+.... +.++..+..+..++.+.|++++|..+|+.+.+.. +.+...+..+...+...|
T Consensus 335 la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 411 (899)
T TIGR02917 335 LASIQLRLGRVDEAIATLSPALGLD--PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQG 411 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCC
Confidence 3455667799999999998776544 6678899999999999999999999999998864 347788889999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHH
Q 037695 191 KLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLID 270 (701)
Q Consensus 191 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 270 (701)
++++|...|+.+.+.. +........++..+.+.|++++|..+++.+... .+++..++..+...|...|++++|.+.|+
T Consensus 412 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 489 (899)
T TIGR02917 412 DPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFE 489 (899)
T ss_pred ChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999998765 334556677888999999999999999999875 36678899999999999999999999999
Q ss_pred HchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC-----------CCCcHHHHHHHHHHHHHcCCCcCH
Q 037695 271 EMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFH-----------DQGRIEEAKELVNQMSQMGCIPDV 339 (701)
Q Consensus 271 ~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~g~~~~a~~~~~~~~~~~~~p~~ 339 (701)
++.+.. +.+...+..+...+...|++++|.+.++.+....+... ..|+.++|..++.++...+ +.+.
T Consensus 490 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 567 (899)
T TIGR02917 490 KALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEI 567 (899)
T ss_pred HHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccch
Confidence 998753 34566788889999999999999999999876432211 2389999999999998764 4467
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 037695 340 VTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGL 419 (701)
Q Consensus 340 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 419 (701)
..+..++..+.+.|++++|..+++.+.... +.+..+|..+...+...|++++|...|+.+.+.. +.+...+..+...+
T Consensus 568 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 645 (899)
T TIGR02917 568 EPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAY 645 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 788889999999999999999999998753 5578899999999999999999999999998764 45677888999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695 420 RREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEAL 499 (701)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 499 (701)
.+.|++++|..+++++.+.. +.+..++..++..+...|++++|..+++.+.... +.+...+..+...+...|++++|.
T Consensus 646 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 646 AVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999998874 5568899999999999999999999999998874 557788888999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037695 500 SLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ 579 (701)
Q Consensus 500 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 579 (701)
..|+.+... .|+..++..++.++.+.|++++|...++++.+.. +.+...+..+...|...|++++|.+.|+++.+..
T Consensus 724 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 724 QAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 999999885 4566788889999999999999999999999874 6788899999999999999999999999999998
Q ss_pred CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHH
Q 037695 580 KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKV 658 (701)
Q Consensus 580 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 658 (701)
|+ +.++..++..+...|+ .+|+.+++++++..+ .++.++..++..+...|++++|+.+++++++.++. +..++..+
T Consensus 801 p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l 877 (899)
T TIGR02917 801 PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHL 877 (899)
T ss_pred CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHH
Confidence 87 7789999999999999 889999999998764 36778889999999999999999999999996654 77899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 037695 659 SERLILEGKSEEADTLMLRFVE 680 (701)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~ 680 (701)
+.+|.+.|++++|.+++++|++
T Consensus 878 ~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 878 ALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHhC
Confidence 9999999999999999999863
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=9.2e-25 Score=253.81 Aligned_cols=552 Identities=14% Similarity=0.093 Sum_probs=314.1
Q ss_pred HHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHH-------------
Q 037695 113 AVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAF------------- 179 (701)
Q Consensus 113 ~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~------------- 179 (701)
++....++++.|.+.+..+.... |.++..+..++.++.+.|+.++|.+.++.+.+.. +.++...
T Consensus 36 ~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~ 112 (1157)
T PRK11447 36 RLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEG 112 (1157)
T ss_pred HHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCch
Confidence 44455677777777777665443 4566677777777777777777777777777654 2232221
Q ss_pred ---HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037695 180 ---SYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIH-VLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKG 255 (701)
Q Consensus 180 ---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 255 (701)
..+...+.+.|++++|++.|+.+.+.. +|+...-..... .....|+.++|+..++++.... +-+...+..+...
T Consensus 113 ~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~l 190 (1157)
T PRK11447 113 RQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALL 190 (1157)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 222335666777777777777776543 333221111111 1223477777777777777652 3345566667777
Q ss_pred HHhcCChhHHHHHHHHchhCCCC----------------CCHH---HHHHHHHHHHHcCChhHHHHHHHHHHhcC-----
Q 037695 256 YCDLHRIKDAIKLIDEMPLKGCS----------------PDKV---SYYTVMGYLCKEKRIKEVRDLMEKMVNDS----- 311 (701)
Q Consensus 256 ~~~~g~~~~A~~~~~~m~~~g~~----------------pd~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----- 311 (701)
+...|+.++|+..|+++...... ++.. .+...+..+-.......|...+.......
T Consensus 191 l~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~ 270 (1157)
T PRK11447 191 LFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAF 270 (1157)
T ss_pred HHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcch
Confidence 77777777777777776542100 0000 00000000001111122222222211100
Q ss_pred ------CCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH-------
Q 037695 312 ------NLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKP-NTVSY------- 377 (701)
Q Consensus 312 ------~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~------- 377 (701)
......|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+..... ....+
T Consensus 271 ~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 271 RARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 00011255555555555555432 1244555555555555555555555555555432110 10111
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-----
Q 037695 378 -----TAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEI----- 447 (701)
Q Consensus 378 -----~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~----- 447 (701)
..+...+.+.|++++|...|+++.... +.+...+..+...+...|++++|+..|+++++.. +.+...+
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~ 427 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLAN 427 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 111223445555555555555555532 2233444445555555555555555555555432 1122221
Q ss_pred -------------------------------------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695 448 -------------------------------------NLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFC 490 (701)
Q Consensus 448 -------------------------------------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 490 (701)
..+...+...|++++|...|+++++.. +-+...+..+...|.
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 223334456677777777777777652 335566667777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------------------------------------HHHHHh
Q 037695 491 QKGDLEEALSLLDDMYLCKKDPDTVTYTTI--------------------------------------------IDALSK 526 (701)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--------------------------------------------i~~~~~ 526 (701)
+.|++++|...++++.+.. +.+...+..+ ...+..
T Consensus 507 ~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 8888888888887776532 1122222222 223344
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 037695 527 NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKIL 605 (701)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 605 (701)
.|+.++|..+++ . .++++..+..+...+.+.|++++|+..|+++++..|. ..++..++..|...|++++|++.+
T Consensus 586 ~G~~~eA~~~l~----~-~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 586 SGKEAEAEALLR----Q-QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCCHHHHHHHHH----h-CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 455555555444 1 2455666677788888888888888888888888877 677888888888888888888888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--C---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 606 GKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI--P---DLKLCKKVSERLILEGKSEEADTLMLRFVE 680 (701)
Q Consensus 606 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (701)
+++++.. +.+..++..++.++...|++++|.+++++++..... | +..++..++..+...|++++|+.+|++++.
T Consensus 661 ~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 661 AKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8877654 235666777788888888888888888888774321 1 124566677888888888888888888875
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.96 E-value=2.6e-23 Score=241.75 Aligned_cols=532 Identities=13% Similarity=0.067 Sum_probs=383.8
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHH--------
Q 037695 143 VYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLIC-------- 214 (701)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------- 214 (701)
..-..++.....++.+.|.+.+.++.... +.++..+..++..+.+.|+.++|.+.+++..+.. +.+....
T Consensus 30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~ 107 (1157)
T PRK11447 30 QLLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLL 107 (1157)
T ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHh
Confidence 35556777888999999999999998754 4488999999999999999999999999998875 3333332
Q ss_pred --------HHHHHHHHccCCHhHHHHHHHHHHhCCCCCChH-HHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHH
Q 037695 215 --------NTAIHVLVVGNKLAKALRFLERMQLAGITPNVL-TYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYY 285 (701)
Q Consensus 215 --------~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 285 (701)
..+...+...|++++|+..|+.+.... +|+.. ....+.......|+.++|++.|+++.+.. +-+...+.
T Consensus 108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~ 185 (1157)
T PRK11447 108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN 185 (1157)
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 333456888999999999999998653 44432 11122222334699999999999998873 33566788
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCC-------------------------------CCCCCcHHHHHHHHHHHHHcC
Q 037695 286 TVMGYLCKEKRIKEVRDLMEKMVNDSNL-------------------------------FHDQGRIEEAKELVNQMSQMG 334 (701)
Q Consensus 286 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~-------------------------------~~~~g~~~~a~~~~~~~~~~~ 334 (701)
.+...+...|+.++|...++++...... +++......|...+..+....
T Consensus 186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~ 265 (1157)
T PRK11447 186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL 265 (1157)
T ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence 8889999999999999999998653211 011122333444444333322
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhH-
Q 037695 335 CIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTP-NAITY- 412 (701)
Q Consensus 335 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~- 412 (701)
..|.... ......+...|++++|+..|++.+... +-+...+..+...+.+.|++++|+..|++..+..... ....+
T Consensus 266 ~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~ 343 (1157)
T PRK11447 266 ADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWE 343 (1157)
T ss_pred cCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHH
Confidence 2222211 233556778999999999999999863 3377888999999999999999999999998754211 11112
Q ss_pred -----------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 037695 413 -----------SVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVN 481 (701)
Q Consensus 413 -----------~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 481 (701)
......+.+.|++++|...|+++++.. +.+...+..+...+...|++++|+..|+++++.. +.+...
T Consensus 344 ~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a 421 (1157)
T PRK11447 344 SLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNA 421 (1157)
T ss_pred HHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 122446778999999999999999874 4567778889999999999999999999998763 223333
Q ss_pred HHHH------------------------------------------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 037695 482 FTSL------------------------------------------IRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTT 519 (701)
Q Consensus 482 ~~~l------------------------------------------l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 519 (701)
+..+ ...+...|++++|+..|++..+.. +-+...+..
T Consensus 422 ~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~ 500 (1157)
T PRK11447 422 VRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYR 500 (1157)
T ss_pred HHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3322 233446788888888888887743 224566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----------------------
Q 037695 520 IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKML----------------------- 576 (701)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------------------- 576 (701)
+...|.+.|++++|...++++.+.. +.++..+..+...+...++.++|+..++++.
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~ 579 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLET 579 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHH
Confidence 8888888899999999888887643 3344433333333333444444444333221
Q ss_pred -----------------hcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 037695 577 -----------------SKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYK 638 (701)
Q Consensus 577 -----------------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 638 (701)
...|. +..+..++..+.+.|++++|+..|+++++..+. ++..+..++..|...|++++|++
T Consensus 580 a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 580 ANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence 12333 456677888899999999999999999987644 78889999999999999999999
Q ss_pred HHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695 639 VACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK 687 (701)
Q Consensus 639 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 687 (701)
.++++.+ ..|+ ......++.++...|++++|.++++++++..+..|+
T Consensus 659 ~l~~ll~--~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 659 QLAKLPA--TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred HHHHHhc--cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 9998887 4444 466777888999999999999999999988766554
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=8.4e-22 Score=218.34 Aligned_cols=540 Identities=11% Similarity=0.028 Sum_probs=299.3
Q ss_pred HHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------
Q 037695 113 AVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVA------- 185 (701)
Q Consensus 113 ~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~------- 185 (701)
.++...|+++.|+..++.+.... |.|...+..+..+ +++..|..+++++.+.. +-+..++..+...
T Consensus 86 ~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i----~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l 158 (987)
T PRK09782 86 EAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI----PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNAL 158 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh----ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchh
Confidence 33344566666666655544432 3333333333111 55556666666665543 2233444444333
Q ss_pred -HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHh-cCCh
Q 037695 186 -YSRAGKLRNAMYVLSMMQKAAVAPNLLICNTA-IHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCD-LHRI 262 (701)
Q Consensus 186 -~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~g~~ 262 (701)
|.+.+...+++. .......|+..+.... .+.|.+.|+++.|+.++.++.+.+ +.+..-...|...|.. .++
T Consensus 159 ~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~- 232 (987)
T PRK09782 159 RLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD- 232 (987)
T ss_pred hhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-
Confidence 444433333332 2222222334433333 677777777777777777777764 3344445556566666 355
Q ss_pred hHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC-------------------------
Q 037695 263 KDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ------------------------- 317 (701)
Q Consensus 263 ~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------------------------- 317 (701)
+.+..+++. .++-+...+..+...|.+.|+.++|..+++.+.......|..
T Consensus 233 ~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~ 308 (987)
T PRK09782 233 DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQF 308 (987)
T ss_pred HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhh
Confidence 666666442 223467777788888888999999988888774421111111
Q ss_pred ------------------CcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037695 318 ------------------GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFC--RVGELDQAKKMLQQMYHHGCKPNTVSY 377 (701)
Q Consensus 318 ------------------g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~ 377 (701)
+.++.+.++ + .+.|..... .+.... ..+...++...+..|.... +-+....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l 379 (987)
T PRK09782 309 ADNRQYVVGATLPVLLKEGQYDAAQKL----L--ATLPANEML--EERYAVSVATRNKAEALRLARLLYQQE-PANLTRL 379 (987)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHH----h--cCCCcchHH--HHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHH
Confidence 222222211 1 123322221 222211 2245556666666665541 1244444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCChhhHHHHHHHHHhcCC---HHHHHHH---------------------
Q 037695 378 TAFLNGLCHNGKSLEAREMINTSEEE-W-WTPNAITYSVVMHGLRREGK---LSEACDV--------------------- 431 (701)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~g~---~~~A~~~--------------------- 431 (701)
-.+.....+.|+.++|..+|...... + ...+......++..|.+.+. ..++..+
T Consensus 380 ~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 459 (987)
T PRK09782 380 DQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIAD 459 (987)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhh
Confidence 44444556667777777777766552 1 11223333345555555443 2222211
Q ss_pred -HHHHHHc-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 432 -VREMVKK-G-FFP--TPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMY 506 (701)
Q Consensus 432 -~~~m~~~-~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 506 (701)
+...... + .++ +...+..+..++.. ++..+|...+...... .|+......+...+...|++++|...|+++.
T Consensus 460 ~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 460 NCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 1111111 1 133 45566666665555 6666777766666554 2343333333444456777777777777765
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHH
Q 037695 507 LCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYN 586 (701)
Q Consensus 507 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 586 (701)
.. +|+...+..+..++.+.|++++|..++++..+.. ++....+..+.....+.|++++|...++++++..|+...+.
T Consensus 537 ~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~ 613 (987)
T PRK09782 537 LH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYV 613 (987)
T ss_pred cc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 42 3444445556666677777777777777777653 33333333344444455777777777777777777766677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhc
Q 037695 587 QVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILE 665 (701)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 665 (701)
.++.++.+.|++++|+..++++++..+. ++..++.++.++...|++++|+..++++++ ..|+ ...+..++.++...
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~--l~P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHK--GLPDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHC
Confidence 7777777777777777777777776533 566677777777777777777777777777 4443 46666777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCc
Q 037695 666 GKSEEADTLMLRFVERGHIQPK 687 (701)
Q Consensus 666 g~~~~A~~~~~~~~~~~~~~~~ 687 (701)
|++++|+..++++++..|....
T Consensus 691 Gd~~eA~~~l~~Al~l~P~~a~ 712 (987)
T PRK09782 691 DDMAATQHYARLVIDDIDNQAL 712 (987)
T ss_pred CCHHHHHHHHHHHHhcCCCCch
Confidence 7777777777777776664433
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.94 E-value=6.6e-21 Score=211.30 Aligned_cols=547 Identities=12% Similarity=0.030 Sum_probs=364.9
Q ss_pred cCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 037695 117 SQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAM 196 (701)
Q Consensus 117 ~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 196 (701)
..|+++.|+..|+.+.... |.++.++..+..+|.+.|++++|...+++..+.. |+...|..++..+ +++.+|.
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHH
Confidence 3499999999999988776 6678899999999999999999999999999864 4444444444333 8999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHH--------HHccCCHhHHHHHHHHHHhCCCCCChHHHHHH-HHHHHhcCChhHHHH
Q 037695 197 YVLSMMQKAAVAPNLLICNTAIHV--------LVVGNKLAKALRFLERMQLAGITPNVLTYNCL-IKGYCDLHRIKDAIK 267 (701)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~~ 267 (701)
.+|+++.+.. +-+...+..+... |.+. ++|.+.++ .......|+..+.... ...|.+.|++++|++
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999875 4455566555555 5555 45555554 3333233345544444 899999999999999
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHhcC--------CCCCCCCcHHHHHHHHHHHHHcCCC-c
Q 037695 268 LIDEMPLKGCSPDKVSYYTVMGYLCK-EKRIKEVRDLMEKMVNDS--------NLFHDQGRIEEAKELVNQMSQMGCI-P 337 (701)
Q Consensus 268 ~~~~m~~~g~~pd~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~--------~~~~~~g~~~~a~~~~~~~~~~~~~-p 337 (701)
++.++.+.+. .+..-...|..+|.. .++ +.+..+++...+.. ..+...|+.++|..++.++...-.. |
T Consensus 204 lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~ 281 (987)
T PRK09782 204 LYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA 281 (987)
T ss_pred HHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence 9999998853 344546666667776 355 66666644321100 0011125555555555554433211 2
Q ss_pred CHHHHHHH------------------------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695 338 DVVTYTAV------------------------------VNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHN 387 (701)
Q Consensus 338 ~~~~~~~l------------------------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 387 (701)
...+|.-+ +..+.+.++++-+.++. .+.|.....-.-..+....
T Consensus 282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~~~~~ 355 (987)
T PRK09782 282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYAVSVAT 355 (987)
T ss_pred ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHhhcccc
Confidence 22222111 11112222222111110 0112111110001111122
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhc--------
Q 037695 388 GKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKK-G-FFPTPVEINLLIQSLCRE-------- 457 (701)
Q Consensus 388 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~~~~~~li~~~~~~-------- 457 (701)
+...++...+..|.... +-+....--+.-...+.|+.++|..+++..... + -.++......++..|.+.
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 33444444444444431 224444444555678899999999999988762 1 233444555666666544
Q ss_pred -----------------CCHHHHHHHHHHHHHc-C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 037695 458 -----------------GKMDGAKKFMQECLNK-G-CAV--NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVT 516 (701)
Q Consensus 458 -----------------g~~~~a~~~~~~~~~~-~-~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 516 (701)
|+...+...+...... + .++ +...|..+..++.. ++.++|+..+.+.... .|+...
T Consensus 435 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~ 511 (987)
T PRK09782 435 VAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQ 511 (987)
T ss_pred HHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHH
Confidence 3333334444444332 1 244 67788888888877 8999999988888763 466555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc
Q 037695 517 YTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF 595 (701)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 595 (701)
...+..++...|++++|...|+++... +|+...+..+..++.+.|++++|..+++++++..|. ...+..+...+...
T Consensus 512 ~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 512 HRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhC
Confidence 445556667999999999999998664 555666777788899999999999999999998877 44444455555677
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHH
Q 037695 596 GYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTL 674 (701)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 674 (701)
|++++|...++++++.. |+...+..++.++.+.|++++|+..+++++. ..|+ ...+..++.++...|++++|+..
T Consensus 590 Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~ 665 (987)
T PRK09782 590 GQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREM 665 (987)
T ss_pred CCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999865 4688899999999999999999999999999 5565 47888899999999999999999
Q ss_pred HHHHHHcCCCCCchHHHHh
Q 037695 675 MLRFVERGHIQPKSEEHLQ 693 (701)
Q Consensus 675 ~~~~~~~~~~~~~~~~~l~ 693 (701)
++++++..|..+....++-
T Consensus 666 l~~AL~l~P~~~~a~~nLA 684 (987)
T PRK09782 666 LERAHKGLPDDPALIRQLA 684 (987)
T ss_pred HHHHHHhCCCCHHHHHHHH
Confidence 9999999988776665543
No 13
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.3e-20 Score=194.86 Aligned_cols=563 Identities=14% Similarity=0.080 Sum_probs=399.3
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 037695 120 DERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVL 199 (701)
Q Consensus 120 ~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 199 (701)
+.+.|.+-|+.+.+++ |++...+---..+....+++..|..+|..........-+...-.+..++.+.|+.+.|+..|
T Consensus 145 ~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred cHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHH
Confidence 3577888888887776 66665555555566677888888888888655332222222334446667888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcc---CCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCC
Q 037695 200 SMMQKAAVAPNLLICNTAIHVLVVG---NKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKG 276 (701)
Q Consensus 200 ~~~~~~~~~~~~~~~~~ll~~~~~~---g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 276 (701)
....+.. +.++.++..|.-.-... ..+..+..++....... .-|+...+.|...|.-.|+++.++.+...+....
T Consensus 223 ~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t 300 (1018)
T KOG2002|consen 223 ERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNT 300 (1018)
T ss_pred HHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence 8887654 23333333333222222 23555666665555443 4466777788888888888888888887776542
Q ss_pred CC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC---CCC---------CCcHHHHHHHHHHHHHcCCCcCHHHH
Q 037695 277 CS--PDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNL---FHD---------QGRIEEAKELVNQMSQMGCIPDVVTY 342 (701)
Q Consensus 277 ~~--pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~---------~g~~~~a~~~~~~~~~~~~~p~~~~~ 342 (701)
.. .-...|..+.++|-..|+++.|...|....+..+- .|. .|+++.+...|+.+.+. .+-+..+.
T Consensus 301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm 379 (1018)
T KOG2002|consen 301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETM 379 (1018)
T ss_pred hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHH
Confidence 11 12345777778888888888888887766553321 121 17778888888887765 23355666
Q ss_pred HHHHHHHHhcC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCChhhHHH
Q 037695 343 TAVVNGFCRVG----ELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTS----EEEWWTPNAITYSV 414 (701)
Q Consensus 343 ~~li~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~ 414 (701)
..|...|...+ ..+.|..++......- +.|...|-.+...+-...-+ .++..|... ...+-.+.+...|.
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 66666676664 4577777777776653 44777887777776654443 335555443 34455577888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695 415 VMHGLRREGKLSEACDVVREMVKK---GFFPTP------VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSL 485 (701)
Q Consensus 415 ll~~~~~~g~~~~A~~~~~~m~~~---~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 485 (701)
+.......|.+..|...|...... ...++. .+--.+...+-..++.+.|.++|..+.+. .|.-+..|--+
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke-hp~YId~ylRl 536 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE-HPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-CchhHHHHHHh
Confidence 999999999999999999987765 112222 22334555666778999999999999886 33334445445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---
Q 037695 486 IRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK-GLVPTVVTYRTVIHRYCQ--- 561 (701)
Q Consensus 486 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~--- 561 (701)
+......+...+|...+....... ..++..++.+...+.+...+..|.+-|....+. ...+|+.+...|.+.|.+
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 444445678899999999988653 556677777888899999999999877777664 223688888888886653
Q ss_pred ---------cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695 562 ---------VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKG 631 (701)
Q Consensus 562 ---------~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 631 (701)
.+..++|+++|.+++..+|. ..+-+.++-+++..|++.+|..+|.++.+... -...+|-.++.+|..+|
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHH
Confidence 34678899999999999887 66778899999999999999999999988653 36678889999999999
Q ss_pred ChhhHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHH
Q 037695 632 IPLLAYKVACRMFNR-NLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHL 692 (701)
Q Consensus 632 ~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 692 (701)
++..|+++|+...++ ....+..+...|++++.+.|++.+|.+++.++....|..+....++
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 999999999999884 3445679999999999999999999999999999999888765543
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=2e-22 Score=197.43 Aligned_cols=456 Identities=15% Similarity=0.121 Sum_probs=323.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 037695 179 FSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCD 258 (701)
Q Consensus 179 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 258 (701)
...|..-..+.|++.+|.+--...-..+ +.+....-.+-..+.+..+.+.....-....+. .+.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 4566666678888888888666555433 333334444445566666666655544443332 23446788888888888
Q ss_pred cCChhHHHHHHHHchhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCc
Q 037695 259 LHRIKDAIKLIDEMPLKGCSP-DKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIP 337 (701)
Q Consensus 259 ~g~~~~A~~~~~~m~~~g~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p 337 (701)
.|+++.|+.+++.+.+. .| ....|..+..++...|+.+.|.+.|...++ +.|
T Consensus 129 rg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alq-------------------------lnP 181 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQ-------------------------LNP 181 (966)
T ss_pred hchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh-------------------------cCc
Confidence 88999999988888876 44 466788888888888888888877777655 456
Q ss_pred CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHH
Q 037695 338 DVVTYTA-VVNGFCRVGELDQAKKMLQQMYHHGCKP-NTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPN-AITYSV 414 (701)
Q Consensus 338 ~~~~~~~-li~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ 414 (701)
+.....+ +...+-..|++++|...|.+.++.. | =...|+.|...+-..|+.-.|+..|++..+. .|+ ...|..
T Consensus 182 ~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiN 257 (966)
T KOG4626|consen 182 DLYCARSDLGNLLKAEGRLEEAKACYLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYIN 257 (966)
T ss_pred chhhhhcchhHHHHhhcccchhHHHHHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhh
Confidence 6554333 3344445788888888888877652 3 2456777888888888888888888888764 344 456777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695 415 VMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGD 494 (701)
Q Consensus 415 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 494 (701)
|...|-..+.+++|...|.+..... +.....+..+...|...|.++.|+..|++.++.. +.-...|+.|..++...|+
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccc
Confidence 7788888888888888887776652 3345567777777788888888888888887762 3346678888888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 495 LEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPT-VVTYRTVIHRYCQVGRVEDLLKLLE 573 (701)
Q Consensus 495 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 573 (701)
+.+|...|.+..... +.-....+.|...|...|++++|..+|....+. .|. ....+.|...|-++|++++|+..|+
T Consensus 336 V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 336 VTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred hHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 888888888877642 223556777888888888888888888887764 333 5567778888888888888888888
Q ss_pred HHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695 574 KMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL 652 (701)
Q Consensus 574 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 652 (701)
+++...|. ..+++.++..|...|+...|++.+.+++..++. -....+.|+..|.-.|+..+|+.-|+.+++ ++||.
T Consensus 413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 88888887 678888888888888888888888888775422 355677788888888888888888888888 77775
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHH
Q 037695 653 -KLCKKVSERLILEGKSEEADTLM 675 (701)
Q Consensus 653 -~~~~~l~~~~~~~g~~~~A~~~~ 675 (701)
..|..++.++.--.+|.+-.+-+
T Consensus 490 pdA~cNllh~lq~vcdw~D~d~~~ 513 (966)
T KOG4626|consen 490 PDAYCNLLHCLQIVCDWTDYDKRM 513 (966)
T ss_pred chhhhHHHHHHHHHhcccchHHHH
Confidence 56666665555444444433333
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=7.7e-22 Score=193.39 Aligned_cols=433 Identities=15% Similarity=0.132 Sum_probs=345.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037695 143 VYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLV 222 (701)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 222 (701)
....+.+-+.+.|++++|.+.-...-.++ +.+......+-..+....+++....--....+.. +.-..+|..+...+-
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 35667788888999999988765444433 2344444445555666667776655544444433 556678999999999
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHH-HcCChhHHH
Q 037695 223 VGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLC-KEKRIKEVR 301 (701)
Q Consensus 223 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~-~~g~~~~a~ 301 (701)
..|+++.|+.+++.+.+.. +..+..|..+..++...|+.+.|...|.+..+. .|+.....+-+..+. ..|++.+|.
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 9999999999999999863 335788999999999999999999999988875 677665555444333 467777766
Q ss_pred HHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 037695 302 DLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPD-VVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPN-TVSYTA 379 (701)
Q Consensus 302 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ 379 (701)
..+.+.+. ..|. ...|+.|...+...|+...|++.|.+.+.. .|+ ...|-.
T Consensus 205 ~cYlkAi~-------------------------~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiN 257 (966)
T KOG4626|consen 205 ACYLKAIE-------------------------TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYIN 257 (966)
T ss_pred HHHHHHHh-------------------------hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhh
Confidence 66655544 2333 467888998999999999999999998875 444 467888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695 380 FLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGK 459 (701)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 459 (701)
|...|...+.++.|...+.+..... +...+.+..+...|-..|.++.|+..|++.+... +--+..|+.|..++-..|+
T Consensus 258 LGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~ 335 (966)
T KOG4626|consen 258 LGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGS 335 (966)
T ss_pred HHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccc
Confidence 8899999999999999888877653 3456677788888899999999999999998874 3346789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 460 MDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPD-TVTYTTIIDALSKNGRVEEATELMM 538 (701)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~ 538 (701)
+.+|...|.+.+.. ++......+.|...|...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|+..|+
T Consensus 336 V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 336 VTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred hHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 99999999999887 455778889999999999999999999999887 4555 4568889999999999999999999
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 539 KMLSKGLVPT-VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK 614 (701)
Q Consensus 539 ~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 614 (701)
+.+. +.|+ ...|+.+...|-..|+++.|++.+.+++..+|. ..+++.|+..|...|++.+|++-|+.+++..+.
T Consensus 413 ealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 413 EALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred HHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence 9887 5666 668899999999999999999999999999998 789999999999999999999999999887654
No 16
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.90 E-value=7.9e-18 Score=173.41 Aligned_cols=565 Identities=13% Similarity=0.067 Sum_probs=355.8
Q ss_pred HHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 037695 112 CAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGK 191 (701)
Q Consensus 112 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 191 (701)
+..+...|+.+.|.+++..+.++. |.....|..|..+|-..|+.+.+...+-..... .+-|...|..+.......|+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL-~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL-NPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHhccc
Confidence 445666799999999999999987 677889999999999999999999988544443 24478999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHH----HHHHHHHHhcCChhHHHH
Q 037695 192 LRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTY----NCLIKGYCDLHRIKDAIK 267 (701)
Q Consensus 192 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~----~~li~~~~~~g~~~~A~~ 267 (701)
++.|.-+|.++++.. +++...+--=...|-+.|+...|..-|.++....-+.+..-+ -.+++.+...++.+.|.+
T Consensus 223 i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999876 666666666778899999999999999999986321122222 234566777888899999
Q ss_pred HHHHchhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC-----------------------------
Q 037695 268 LIDEMPLKG-CSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ----------------------------- 317 (701)
Q Consensus 268 ~~~~m~~~g-~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------------------------- 317 (701)
.++.....+ -.-+...++.++..+.+...++.+......+... ...++.
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r-~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNR-ESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhcc-ccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 999887632 2335567888889999999999888877766551 100000
Q ss_pred ----------CcHHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695 318 ----------GRIEEAKELVNQMSQMGC--IPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLC 385 (701)
Q Consensus 318 ----------g~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 385 (701)
...+....+...+.+..+ .-+...|.-+..+|...|+++.|+.+|..+.....--+...|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 223333334444444443 33566788888999999999999999999987655556778888999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHhc
Q 037695 386 HNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVK--------KGFFPTPVEINLLIQSLCRE 457 (701)
Q Consensus 386 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--------~~~~~~~~~~~~li~~~~~~ 457 (701)
..|.++.|...|....... +.+...-..|...+.+.|+.++|.+++..+.. .+..|...........+...
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999888753 44555666777788889999999999888542 23444444555555666667
Q ss_pred CCHHHHHHHHHHHHHcC----------------------CCCCHHH----------------------------------
Q 037695 458 GKMDGAKKFMQECLNKG----------------------CAVNVVN---------------------------------- 481 (701)
Q Consensus 458 g~~~~a~~~~~~~~~~~----------------------~~~~~~~---------------------------------- 481 (701)
|+.++=..+...|+... .+....+
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 76655433333222110 0000011
Q ss_pred ---------HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC-
Q 037695 482 ---------FTSLIRGFCQKGDLEEALSLLDDMYLCKK-DPDTV----TYTTIIDALSKNGRVEEATELMMKMLSK-GL- 545 (701)
Q Consensus 482 ---------~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~- 545 (701)
+.-++.++++.+++++|+.+...+..... ..+.. .-...+.+....+++..|...++.|+.. +.
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 12233344444444445444444433211 01111 1122233334444555555555444443 00
Q ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037695 546 -VP-TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCH 621 (701)
Q Consensus 546 -~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 621 (701)
.| -...|+...+.+.+.++-.--.+++..+....|. ++.....+..+...+.+.-|...+-.+....+. +|.+.-
T Consensus 700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd-~Pl~nl 778 (895)
T KOG2076|consen 700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPD-SPLINL 778 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCC-CcHHHH
Confidence 01 1122333333333334333333333333333332 122222233444567788888888888776543 233322
Q ss_pred HHHHHHHh--cC--------ChhhHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 622 VLVESYLN--KG--------IPLLAYKVACRMFNR-NLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 622 ~l~~~~~~--~g--------~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
.++-++.. .+ ..-.++.++++..+. ...-...++..++++|-..|-.--|+.+|+++++..|
T Consensus 779 ~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 779 CLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence 23222221 11 122345555555541 1111246777799999999999999999999998764
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=4.6e-19 Score=193.77 Aligned_cols=92 Identities=11% Similarity=-0.011 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 037695 179 FSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCD 258 (701)
Q Consensus 179 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 258 (701)
+......+.+.|++++|+..|++.++. .|+...|..+..+|.+.|++++|+..++...+.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 344455555666666666666665543 3455555555566666666666666666655542 2234455555566666
Q ss_pred cCChhHHHHHHHHch
Q 037695 259 LHRIKDAIKLIDEMP 273 (701)
Q Consensus 259 ~g~~~~A~~~~~~m~ 273 (701)
.|++++|+..|....
T Consensus 207 lg~~~eA~~~~~~~~ 221 (615)
T TIGR00990 207 LGKYADALLDLTASC 221 (615)
T ss_pred cCCHHHHHHHHHHHH
Confidence 666666655554443
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=3.5e-18 Score=186.89 Aligned_cols=431 Identities=10% Similarity=-0.051 Sum_probs=198.8
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 037695 143 VYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLV 222 (701)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 222 (701)
.+......+.+.|+++.|...|...++. .|++..|..+..+|.+.|++++|+..+....+.. +.+...+..+..+|.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 3556667777777777777777777663 3566677777777777777777777777777654 445566777777777
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 037695 223 VGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRD 302 (701)
Q Consensus 223 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~ 302 (701)
..|++++|+..|..+...+ ..+......++..+........+...++.- +++...+..+. .+...........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~-----~~~~~~~~~~~-~~~~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIID-GFRNEQSAQAVERLLKKFAESKAKEILETK-----PENLPSVTFVG-NYLQSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCCCCHHHHH-HHHHHccCCcchh
Confidence 7777777777766555432 111111111111111111111122222111 11111111111 1111000000000
Q ss_pred HHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695 303 LMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDV-VTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFL 381 (701)
Q Consensus 303 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 381 (701)
-+ ....+ ..+.. ..+..+...+..
T Consensus 279 ~~-----------------------~~~~~--~~~~~~~~~~~l~~~~~e------------------------------ 303 (615)
T TIGR00990 279 GL-----------------------EDSNE--LDEETGNGQLQLGLKSPE------------------------------ 303 (615)
T ss_pred hh-----------------------hcccc--cccccccchHHHHHHHHH------------------------------
Confidence 00 00000 00000 000000000000
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695 382 NGLCHNGKSLEAREMINTSEEEW--WTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGK 459 (701)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 459 (701)
....+++++|.+.|+.....+ .+.....|..+...+...|++++|+..+++.+... +.....|..+...+...|+
T Consensus 304 --~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~ 380 (615)
T TIGR00990 304 --SKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGD 380 (615)
T ss_pred --hhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCC
Confidence 011233444444444444322 01122233444444444455555555555444432 1223344444444555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 460 MDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMK 539 (701)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 539 (701)
+++|...|+.+++.. +.+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++
T Consensus 381 ~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~ 458 (615)
T TIGR00990 381 PDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRR 458 (615)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555555555554431 2234455555555555555555555555555432 22334444555555555666666666555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhH-------HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 540 MLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTA-------YNQVIENLCSFGYLEEAGKILGKVLRT 611 (701)
Q Consensus 540 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~ 611 (701)
.+... +.++..+..+...+...|++++|++.|++++...|. ... ++..+..+...|++++|..+++++++.
T Consensus 459 al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 459 CKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 55432 334555555555555666666666666665555443 111 111111222345666666666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 612 ASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 612 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
.+. +...+..++..+...|++++|+..|+++.+
T Consensus 538 ~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 538 DPE-CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred CCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 422 334555566666666666666666666655
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.89 E-value=4e-17 Score=169.36 Aligned_cols=557 Identities=12% Similarity=0.049 Sum_probs=404.7
Q ss_pred HHhcCCChHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---c
Q 037695 114 VLRSQADERVALQFFYWADRQ-WRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSR---A 189 (701)
Q Consensus 114 ~l~~~~~~~~Al~~f~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~---~ 189 (701)
++...+++..|+.+|..+.+. +..++|+. -.+..++.+.|+.+.|...|........ -+..++..|.-.-.. .
T Consensus 173 i~ynkkdY~~al~yyk~al~inp~~~aD~r--Igig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~ 249 (1018)
T KOG2002|consen 173 IAYNKKDYRGALKYYKKALRINPACKADVR--IGIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDS 249 (1018)
T ss_pred HHhccccHHHHHHHHHHHHhcCcccCCCcc--chhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccch
Confidence 344458999999999987554 44566753 3455788899999999999999987541 122233222222222 2
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCC--CChHHHHHHHHHHHhcCChhHHHH
Q 037695 190 GKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGIT--PNVLTYNCLIKGYCDLHRIKDAIK 267 (701)
Q Consensus 190 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~~~~g~~~~A~~ 267 (701)
..+..++.++...-... +-|+...+.|...|...|++..++.+...+...... .-...|-.+.++|...|++++|..
T Consensus 250 ~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~ 328 (1018)
T KOG2002|consen 250 DSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFK 328 (1018)
T ss_pred HHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 34667777777776554 678889999999999999999999999998865311 123457888999999999999999
Q ss_pred HHHHchhCCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC---------------CcHHHHHHHHHHH
Q 037695 268 LIDEMPLKGCSPDK--VSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ---------------GRIEEAKELVNQM 330 (701)
Q Consensus 268 ~~~~m~~~g~~pd~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------------g~~~~a~~~~~~~ 330 (701)
.|.+..+. .||. ..+..+...+.+.|+++.+...|+.+.....-.+.. -..+.|..++...
T Consensus 329 yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 329 YYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 99888765 4454 445667899999999999999999987633222211 2446777777776
Q ss_pred HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 037695 331 SQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMY----HHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEE--- 403 (701)
Q Consensus 331 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--- 403 (701)
.+.- +.|...|-.+...+-... ...++.+|.... ..+-.+.+...|.+...+...|++..|...|......
T Consensus 407 ~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 407 LEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred Hhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 6653 446778877777665544 444476666544 4555578889999999999999999999999887654
Q ss_pred CCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695 404 WWTPNA------ITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV 477 (701)
Q Consensus 404 ~~~~~~------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 477 (701)
-..++. .+-..+...+-..++.+.|.+.|..+++.. +.-...|..+..+....+...+|...+...... ...
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~ 562 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSS 562 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccC
Confidence 112222 233345666677789999999999998872 323344555554444567888999999988775 344
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCC
Q 037695 478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCK-KDPDTVTYTTIIDALSK------------NGRVEEATELMMKMLSKG 544 (701)
Q Consensus 478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~------------~g~~~~A~~~~~~m~~~~ 544 (701)
++..++.+...+.+...+..|.+-|..+.+.- ..+|..+...|.+.|.+ .+..++|+++|.+.+...
T Consensus 563 np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d 642 (1018)
T KOG2002|consen 563 NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND 642 (1018)
T ss_pred CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC
Confidence 66677777788889999999998777776432 23566666666665543 244678999999888864
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHH
Q 037695 545 LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK-CRTAYNQVIENLCSFGYLEEAGKILGKVLRTAS-KADASTCHV 622 (701)
Q Consensus 545 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ 622 (701)
|-|..+-+-+.-.++..|++.+|..+|.+..+... ...+|-.++.+|...|++..|+++|+..++.-. ..++.+...
T Consensus 643 -pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~ 721 (1018)
T KOG2002|consen 643 -PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHY 721 (1018)
T ss_pred -cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHH
Confidence 66778888888889999999999999999887654 467899999999999999999999999877633 456788888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCH--hhHHHHHHH-------------------HHhcCCHHHHHHHHHHHHHc
Q 037695 623 LVESYLNKGIPLLAYKVACRMFNRNLIPDL--KLCKKVSER-------------------LILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~-------------------~~~~g~~~~A~~~~~~~~~~ 681 (701)
|+.++...|.+.+|.+.+..+.. ..|.. ..++ ++-. ....+..+.|.++|..+.+.
T Consensus 722 Lara~y~~~~~~eak~~ll~a~~--~~p~~~~v~FN-~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~ 798 (1018)
T KOG2002|consen 722 LARAWYEAGKLQEAKEALLKARH--LAPSNTSVKFN-LALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKN 798 (1018)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH--hCCccchHHhH-HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999988888 44432 2222 2111 11346778899999999887
Q ss_pred CCC
Q 037695 682 GHI 684 (701)
Q Consensus 682 ~~~ 684 (701)
+..
T Consensus 799 ~d~ 801 (1018)
T KOG2002|consen 799 GDK 801 (1018)
T ss_pred CCC
Confidence 765
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.1e-19 Score=188.70 Aligned_cols=299 Identities=15% Similarity=0.097 Sum_probs=157.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCC
Q 037695 348 GFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPN---AITYSVVMHGLRREGK 424 (701)
Q Consensus 348 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~ 424 (701)
.+...|++++|...|.++.+.+ +.+..++..+...+...|++++|..+++.+......++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3456667777777777776653 22444666666666667777777776666665321111 1344555566666666
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 037695 425 LSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVN----VVNFTSLIRGFCQKGDLEEALS 500 (701)
Q Consensus 425 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~ 500 (701)
+++|..+|+++.+.. +++..++..++..+.+.|++++|...++.+.+.+..+. ...+..+...+...|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 666666666665542 33445555666666666666666666666555432211 1123344445555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037695 501 LLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK 580 (701)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 580 (701)
.|+++.+.. +.+...+..+...|.+.|++++|.++|+++...+......++..++.+|.+.|++++|...++++.+..|
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p 280 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP 280 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 555555432 1223344455555555555555555555555432111123445555555555555555555555555555
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChhhHHHHHHHHHhCCCCCC
Q 037695 581 CRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN---KGIPLLAYKVACRMFNRNLIPD 651 (701)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~ 651 (701)
+...+..++..+.+.|++++|..+++++++. .|+...+..++..++. .|+..+|+..++++.++++.|+
T Consensus 281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 5444455555555555555555555555543 3444445444444432 3355555555555555444433
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=1.3e-19 Score=188.19 Aligned_cols=300 Identities=14% Similarity=0.134 Sum_probs=252.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc
Q 037695 381 LNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPT---PVEINLLIQSLCRE 457 (701)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~ 457 (701)
...+...|++++|...|.++.+.. +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334567899999999999999864 34566888999999999999999999999988642222 24678889999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHH
Q 037695 458 GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPD----TVTYTTIIDALSKNGRVEEA 533 (701)
Q Consensus 458 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~li~~~~~~g~~~~A 533 (701)
|+++.|..+|..+.+. .+.+..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999876 345788899999999999999999999999987653332 12456677888999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 534 TELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLRT 611 (701)
Q Consensus 534 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 611 (701)
..+|+++.+.. +.+...+..++..+.+.|++++|.++++++....|. ..++..++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999864 445778888999999999999999999999988776 456788999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCc
Q 037695 612 ASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLIL---EGKSEEADTLMLRFVERGHIQPK 687 (701)
Q Consensus 612 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 687 (701)
. |+...+..++..+.+.|++++|+..++++++ ..|+...+..++..+.. .|+.++|+.+++++.+++..+++
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~--~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLR--RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 4 4555668899999999999999999999998 57888888877777664 56999999999999988764444
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=1.1e-18 Score=189.77 Aligned_cols=333 Identities=14% Similarity=0.053 Sum_probs=167.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 037695 345 VVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGK 424 (701)
Q Consensus 345 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 424 (701)
++..+.+.|+++.|..++......... +...+..++.++...|+++.|...++++.... +.+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 344455555555555555555544211 22333333344445555555555555555432 2233444555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 425 LSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDD 504 (701)
Q Consensus 425 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 504 (701)
+++|...++++.+.. +.+...+..+...+...|++++|...++.+..... .+...+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 555555555555542 23344455555555555555555555555544321 122222222 224555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhcCC
Q 037695 505 MYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVED----LLKLLEKMLSKQK 580 (701)
Q Consensus 505 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~----A~~~~~~~~~~~p 580 (701)
+......++...+..+..++...|++++|...++++.... +.+...+..+...+...|++++ |...|++++...|
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 5443222223333334445555555555555555555542 3344455555555555555553 5555555555555
Q ss_pred C-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHH
Q 037695 581 C-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKV 658 (701)
Q Consensus 581 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l 658 (701)
+ ..++..++..+...|++++|...++++++..+. ++..+..++.+|...|++++|+..++++.. ..|+. ..+..+
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~--~~P~~~~~~~~~ 358 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAR--EKGVTSKWNRYA 358 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCccchHHHHHH
Confidence 5 445555555555555555555555555554322 344455555555555555555555555555 23332 223333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695 659 SERLILEGKSEEADTLMLRFVERGHIQP 686 (701)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 686 (701)
+.++...|++++|+..|+++.+..|...
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 4455555555555555555555554433
No 23
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.88 E-value=6.2e-18 Score=184.03 Aligned_cols=300 Identities=12% Similarity=0.053 Sum_probs=202.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 037695 339 VVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHG 418 (701)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 418 (701)
...+..++.++...|+++.|...++.+.... +.+...+..+...+...|++++|...+.+..... +.+...+..+...
T Consensus 76 ~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~ 153 (656)
T PRK15174 76 RDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRT 153 (656)
T ss_pred hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3444445555666777777777777777653 2245566666677777777777777777776642 3345566667777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695 419 LRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEA 498 (701)
Q Consensus 419 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 498 (701)
+...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.+......++...+..+..++...|++++|
T Consensus 154 l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA 231 (656)
T PRK15174 154 LVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEA 231 (656)
T ss_pred HHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHH
Confidence 777777777777777666553 2223333333 23666777777777777776653333344444556677777888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 499 LSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEE----ATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEK 574 (701)
Q Consensus 499 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 574 (701)
+..+++..... +.+...+..+...|...|++++ |...|++..... |.+...+..+...+.+.|++++|+..+++
T Consensus 232 ~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~ 309 (656)
T PRK15174 232 IQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQ 309 (656)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 88888877643 3345666777777788888775 677788777753 44566777778888888888888888888
Q ss_pred HHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 575 MLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 575 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
++...|. ..++..++.+|...|++++|...++++++..+. +...+..++.++...|++++|+..|+++.+
T Consensus 310 al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~ 380 (656)
T PRK15174 310 SLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQ 380 (656)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8877777 556677778888888888888888887765432 233344456677788888888888888877
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=1.2e-17 Score=185.80 Aligned_cols=417 Identities=11% Similarity=0.038 Sum_probs=238.4
Q ss_pred CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHH
Q 037695 208 APNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTV 287 (701)
Q Consensus 208 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 287 (701)
+.+.....-.+.+....|+.++|++++....... +.+...+..+...+.+.|++++|.+++++..... +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 4555566666777777788888888887776521 4445567777777888888888888888776541 2234555666
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 288 MGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYH 367 (701)
Q Consensus 288 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 367 (701)
...+...|++++|...++.+.. . .+.+.. +..+..++...|+.++|+..++++.+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~-----------------------~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVS-----------------------G-APDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH-----------------------h-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6667777776666666666544 1 122444 66677777777777777777777776
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 368 HGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAI------TYSVVMHGLRREGKLSEACDVVREMVKKGFF 441 (701)
Q Consensus 368 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 441 (701)
.. +-+...+..+..++...+..+.|+..++.... .|+.. ....++......
T Consensus 145 ~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~------------------- 201 (765)
T PRK10049 145 RA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMP------------------- 201 (765)
T ss_pred hC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccc-------------------
Confidence 53 22444555566666677777777777765543 22210 000011111000
Q ss_pred CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHc-CCCCCH-HHHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCC-
Q 037695 442 PTPVEINLLIQSLCREGKM---DGAKKFMQECLNK-GCAVNV-VNFT----SLIRGFCQKGDLEEALSLLDDMYLCKKD- 511 (701)
Q Consensus 442 ~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~-~~~~~~-~~~~----~ll~~~~~~g~~~~A~~~~~~~~~~~~~- 511 (701)
.....+++ +.|+..++.+.+. ...|+. ..+. ..+..+...|++++|+..|+.+.+.+..
T Consensus 202 -----------~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~ 270 (765)
T PRK10049 202 -----------TRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQII 270 (765)
T ss_pred -----------ccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCC
Confidence 00111112 4455555555432 111111 0110 1122334456666666666666654321
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------
Q 037695 512 PDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVP---TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC------- 581 (701)
Q Consensus 512 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------- 581 (701)
|+. ....+..+|...|++++|..+|+++....... .......+..++...|++++|.++++.+....|.
T Consensus 271 P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~ 349 (765)
T PRK10049 271 PPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGS 349 (765)
T ss_pred CHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCC
Confidence 221 11123556666666666666666665432100 1233444555566666666666666666655441
Q ss_pred ---------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-
Q 037695 582 ---------RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD- 651 (701)
Q Consensus 582 ---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 651 (701)
...+..++..+...|++++|+.++++++...+. +...+..++..+...|++++|++.+++++. +.|+
T Consensus 350 ~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~ 426 (765)
T PRK10049 350 PTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRN 426 (765)
T ss_pred CCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCC
Confidence 123345566666777777777777777665433 566677777777777777777777777777 4455
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchH
Q 037695 652 LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSE 689 (701)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 689 (701)
...+...+..+...|++++|..+++++++..|..+...
T Consensus 427 ~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 427 INLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 35555566667777777777777777777776555433
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.86 E-value=3.8e-17 Score=181.91 Aligned_cols=434 Identities=9% Similarity=-0.039 Sum_probs=271.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCC
Q 037695 162 RVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAG 241 (701)
Q Consensus 162 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g 241 (701)
..++. .+ ..+.++....-.+......|+.++|+.++....... +.+...+..+..++...|++++|..++++.....
T Consensus 3 ~~~~~-~~-~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~ 79 (765)
T PRK10049 3 SWLRQ-AL-KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE 79 (765)
T ss_pred hhhhh-hh-ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 44555 22 235677778888888899999999999999998633 5566679999999999999999999999988762
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHH
Q 037695 242 ITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIE 321 (701)
Q Consensus 242 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~ 321 (701)
+.+...+..++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|...++.+..
T Consensus 80 -P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~------------ 144 (765)
T PRK10049 80 -PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALP------------ 144 (765)
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH------------
Confidence 4456778888899999999999999999998762 33455 88888888889888888888877765
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHhcCCHHHHHH
Q 037695 322 EAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTV------SYTAFLNGLCHNGKSLEARE 395 (701)
Q Consensus 322 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~li~~~~~~g~~~~A~~ 395 (701)
. .+.+...+..+..++...+..+.|+..++.... .|+.. ....++......+
T Consensus 145 -----------~-~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~------- 202 (765)
T PRK10049 145 -----------R-APQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT------- 202 (765)
T ss_pred -----------h-CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc-------
Confidence 1 123556667788888889999999998887664 23310 0111111111000
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCH---HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHH
Q 037695 396 MINTSEEEWWTPNAITYSVVMHGLRREGKL---SEACDVVREMVKK-GFFPTPV-EI----NLLIQSLCREGKMDGAKKF 466 (701)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~m~~~-~~~~~~~-~~----~~li~~~~~~g~~~~a~~~ 466 (701)
....+++ ++|+..++.+.+. ...|+.. .+ ...+..+...|++++|+..
T Consensus 203 -----------------------~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~ 259 (765)
T PRK10049 203 -----------------------RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE 259 (765)
T ss_pred -----------------------cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 0111111 4444444444432 1111110 00 0002223344555555555
Q ss_pred HHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695 467 MQECLNKGCA-VNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDP---DTVTYTTIIDALSKNGRVEEATELMMKMLS 542 (701)
Q Consensus 467 ~~~~~~~~~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (701)
|+.+.+.+.+ |+. ....+...|...|++++|+..|+++....... .......+..++...|++++|..+++.+..
T Consensus 260 ~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~ 338 (765)
T PRK10049 260 YQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN 338 (765)
T ss_pred HHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence 5555554321 111 11113445555666666666666554322110 122344444455566666666666666554
Q ss_pred CC-----------CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 543 KG-----------LVPT---VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGK 607 (701)
Q Consensus 543 ~~-----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 607 (701)
.. -.|+ ...+..++..+...|++++|+++++++....|. ...+..++..+...|++++|++.+++
T Consensus 339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 31 0122 123455666777778888888888888777776 56777777777788888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037695 608 VLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERL 662 (701)
Q Consensus 608 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 662 (701)
++...+ .+...+..++..+...|++++|...++++++ ..|+......+...+
T Consensus 419 al~l~P-d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 419 AEVLEP-RNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLARAR 470 (765)
T ss_pred HHhhCC-CChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 777653 2455666677777778888888888888877 556554444443333
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=1e-15 Score=166.76 Aligned_cols=465 Identities=12% Similarity=0.041 Sum_probs=263.1
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 037695 138 RHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRP--EAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICN 215 (701)
Q Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 215 (701)
|..+.+...-+-...+.|++..|...|++..+.. |+. ..+ .++..+...|+.++|+..+++.... .+.......
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~ll 106 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLA 106 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHH
Confidence 3344444555556778888888888888887754 332 333 7777777888888888888887721 122233333
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcC
Q 037695 216 TAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEK 295 (701)
Q Consensus 216 ~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g 295 (701)
.+...+...|++++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+... .|+...+..++..+...+
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~ 183 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATD 183 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcc
Confidence 33557777788888888888888763 344666677778888888888888888888765 555555533333333333
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 037695 296 RIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTV 375 (701)
Q Consensus 296 ~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 375 (701)
+..+|.+.++++ .+.. +-+...+..++.++.+.|-...|.++.+.- |+..
T Consensus 184 ~~~~AL~~~ekl-----------------------l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f 233 (822)
T PRK14574 184 RNYDALQASSEA-----------------------VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLV 233 (822)
T ss_pred hHHHHHHHHHHH-----------------------HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------cccc
Confidence 333344444444 3332 235666677777788888877777666552 2222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCCHH----HHHH
Q 037695 376 SYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKK-G-FFPTPV----EINL 449 (701)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~-~~~~~~----~~~~ 449 (701)
+-...... ..+.|.+..+.. ..++..- . . +---.+.|+.-++.+... + .++... ...-
T Consensus 234 ~~~~~~~l-----~~~~~a~~vr~a----~~~~~~~-~---~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~D 297 (822)
T PRK14574 234 SAEHYRQL-----ERDAAAEQVRMA----VLPTRSE-T---E---RFDIADKALADYQNLLTRWGKDPEAQADYQRARID 297 (822)
T ss_pred CHHHHHHH-----HHHHHHHHHhhc----ccccccc-h---h---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHH
Confidence 11111110 001111111110 0000000 0 0 000123344444444331 1 111111 1112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHH
Q 037695 450 LIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCK-----KDPDTVTYTTIIDAL 524 (701)
Q Consensus 450 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~ 524 (701)
.+-++...+++.+++..|+.+...+.+....+-.++.++|...+++++|..+|..+.... ..++......|.-+|
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 233445566666666666666665555445555566666666666666666666664422 122333345566666
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-----------CC--CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHH
Q 037695 525 SKNGRVEEATELMMKMLSKGL-----------VP--TV-VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVI 589 (701)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~-----------~p--~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~ 589 (701)
...+++++|..+++.+.+... .| |- ..+..++..+...|++.+|++.++++....|. ......++
T Consensus 378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A 457 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA 457 (822)
T ss_pred HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 666666666666666665210 12 21 22334455666777777777777777777666 56667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHH
Q 037695 590 ENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKV 658 (701)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 658 (701)
..+...|.+.+|+..++.+.... +-+..+....+.++...|++.+|......+.. ..|+......+
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~~l 523 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQEL 523 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHHHH
Confidence 77777777777777776666553 33556666777777777777777777777777 45554433333
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.85 E-value=1.3e-15 Score=166.02 Aligned_cols=452 Identities=14% Similarity=0.088 Sum_probs=308.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcC
Q 037695 183 MVAYSRAGKLRNAMYVLSMMQKAAVAPNL--LICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLH 260 (701)
Q Consensus 183 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g 260 (701)
+....+.|++..|+..|++..+.. |+. ..+ .++..+...|+.++|+.++++.... ...+......+...|...|
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~g 116 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEK 116 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC
Confidence 334458888888888888887664 332 233 7777788888888888888887721 1122233333356777888
Q ss_pred ChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHH
Q 037695 261 RIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVV 340 (701)
Q Consensus 261 ~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 340 (701)
++++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+.. ..|+..
T Consensus 117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~-------------------------~dp~~~ 170 (822)
T PRK14574 117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAE-------------------------RDPTVQ 170 (822)
T ss_pred CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc-------------------------cCcchH
Confidence 8888888888888763 22355566666777777777777766666644 245555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 037695 341 TYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLR 420 (701)
Q Consensus 341 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 420 (701)
.+..++..+...++..+|+..++++.+.. +-+...+..++.++.+.|-...|.++..+- |+..+-......
T Consensus 171 ~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~~l-- 241 (822)
T PRK14574 171 NYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYRQL-- 241 (822)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHHHH--
Confidence 55444444444556656888888888763 335666677777888888887777666542 322221111110
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHH----HHHHHHHHhcCC
Q 037695 421 REGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK--GCAVNVVNF----TSLIRGFCQKGD 494 (701)
Q Consensus 421 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~----~~ll~~~~~~g~ 494 (701)
..+.|.+. ++.+..++... -. +---.+.|..-++.+... ..|+....| .-.+-++...|+
T Consensus 242 ---~~~~~a~~----vr~a~~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r 307 (822)
T PRK14574 242 ---ERDAAAEQ----VRMAVLPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQ 307 (822)
T ss_pred ---HHHHHHHH----Hhhcccccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhh
Confidence 01122222 22221111100 00 000134455555555442 123222222 234557788999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695 495 LEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKG-----LVPTVVTYRTVIHRYCQVGRVEDLL 569 (701)
Q Consensus 495 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~g~~~~A~ 569 (701)
+.++++.|+.+...+.+....+-..+.++|...+++++|..+|..+.... .+++......|..++...+++++|.
T Consensus 308 ~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~ 387 (822)
T PRK14574 308 TADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAY 387 (822)
T ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHH
Confidence 99999999999987765445577889999999999999999999997653 2334444678999999999999999
Q ss_pred HHHHHHHhcCC-------------C---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 037695 570 KLLEKMLSKQK-------------C---RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP 633 (701)
Q Consensus 570 ~~~~~~~~~~p-------------~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 633 (701)
.+++++.+..| + ......++..+...|++.+|++.+++++... +-|......++..+...|.+
T Consensus 388 ~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 388 QFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLP 466 (822)
T ss_pred HHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 99999988544 1 2244556788889999999999999998876 44999999999999999999
Q ss_pred hhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHH
Q 037695 634 LLAYKVACRMFNRNLIPDL-KLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEE 690 (701)
Q Consensus 634 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 690 (701)
.+|...++.+.. +.|+. .+....+.++...|+|++|..+..++.+..|..++...
T Consensus 467 ~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~ 522 (822)
T PRK14574 467 RKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQE 522 (822)
T ss_pred HHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHH
Confidence 999999988877 56654 77778888899999999999999999999998886553
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.84 E-value=2.3e-14 Score=142.46 Aligned_cols=487 Identities=13% Similarity=0.049 Sum_probs=330.0
Q ss_pred CCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHH
Q 037695 155 KLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFL 234 (701)
Q Consensus 155 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 234 (701)
-+.+.|.-++....+. ++.+...| .++++..-++.|.+++++..+. ++.+...|.+....=-.+|+.+...+++
T Consensus 390 E~~~darilL~rAvec-cp~s~dLw----lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii 463 (913)
T KOG0495|consen 390 EEPEDARILLERAVEC-CPQSMDLW----LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKII 463 (913)
T ss_pred cChHHHHHHHHHHHHh-ccchHHHH----HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence 3444555566555553 23333333 3445566667777777776653 3666667766666666777777776666
Q ss_pred HH----HHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037695 235 ER----MQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPD--KVSYYTVMGYLCKEKRIKEVRDLMEKMV 308 (701)
Q Consensus 235 ~~----m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 308 (701)
.+ +...|+..+...|-.=...|-..|.+-.+..+....+..|+.-. ..||..-...|.+.+.++-|..+|...+
T Consensus 464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al 543 (913)
T KOG0495|consen 464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL 543 (913)
T ss_pred HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence 54 33456666666666666667777777777777777666665432 3466666666666666666666665554
Q ss_pred hcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695 309 NDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNG 388 (701)
Q Consensus 309 ~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 388 (701)
+ . ++-+...|...+..--..|..+....+|++.... ++-....|-.....+-..|
T Consensus 544 q-----------------------v-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~ag 598 (913)
T KOG0495|consen 544 Q-----------------------V-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAG 598 (913)
T ss_pred h-----------------------h-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcC
Confidence 4 1 2334556666655555567777777777777765 2334555666666666778
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 389 KSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQ 468 (701)
Q Consensus 389 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 468 (701)
+...|+.++....+.. +.+...|..-+........++.|..+|.+.... .|+...|.--+...--.++.++|.++++
T Consensus 599 dv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllE 675 (913)
T KOG0495|consen 599 DVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLE 675 (913)
T ss_pred CcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHH
Confidence 8888888887777654 335666777777777777888888888776654 5666666666666666777888888887
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 037695 469 ECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPT 548 (701)
Q Consensus 469 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 548 (701)
+.++. ++.-...|..+...+-+.++++.|...|..-.+. ++..+..|..|...--+.|.+-.|..++++..-.+ |-+
T Consensus 676 e~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~ 752 (913)
T KOG0495|consen 676 EALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKN 752 (913)
T ss_pred HHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCc
Confidence 77776 4445566777777778888888888877766543 23344566666666667778888888888877765 556
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695 549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESY 627 (701)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 627 (701)
...|...|+.-.+.|+.+.|..++.++++.-|+ ...|..-+....+.++-..+...+++ +..|+.+.-..+..+
T Consensus 753 ~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lf 827 (913)
T KOG0495|consen 753 ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLF 827 (913)
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHH
Confidence 777888888888888888888888888887777 45666666666666665555555544 355777777777888
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695 628 LNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSERLILEGKSEEADTLMLRFVERGHIQ 685 (701)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 685 (701)
.....++.|.+.|.++++ +.||. ++|..+...+.++|.-++-.+++.++....|..
T Consensus 828 w~e~k~~kar~Wf~Ravk--~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h 884 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVK--KDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH 884 (913)
T ss_pred HHHHHHHHHHHHHHHHHc--cCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 888888888888888888 55665 777777778888888888888888887766543
No 29
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.82 E-value=2.6e-13 Score=135.10 Aligned_cols=541 Identities=11% Similarity=0.067 Sum_probs=395.5
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHH------------HHH
Q 037695 119 ADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLM------------VAY 186 (701)
Q Consensus 119 ~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li------------~~~ 186 (701)
+|...|.-++..+.... |.++..|-+-.+.--..|.+..|..+...=-+. ++.+...|.--+ .--
T Consensus 265 ~DikKaR~llKSvretn--P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiRLhp~d~aK~vvA~A 341 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN--PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIRLHPPDVAKTVVANA 341 (913)
T ss_pred HHHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHhcCChHHHHHHHHHH
Confidence 35567888877665544 555567776666666777777777665432221 122223332221 111
Q ss_pred HH-----------cC----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHH
Q 037695 187 SR-----------AG----KLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNC 251 (701)
Q Consensus 187 ~~-----------~g----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~ 251 (701)
.+ .- +...=..++.+..+. ++.++..|...+ ..-..+.|..++.+..+. ++.+..
T Consensus 342 vr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~d---- 411 (913)
T KOG0495|consen 342 VRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMD---- 411 (913)
T ss_pred HHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHH----
Confidence 11 11 111122233333332 244444444332 334555577777777664 333333
Q ss_pred HHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc---CCCCCC------------
Q 037695 252 LIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVND---SNLFHD------------ 316 (701)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~~~~~------------ 316 (701)
|..+|++..-++.|.++++..++. ++.+...|.+-...--.+|+.+...+++.+-+.. .|...+
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 334567777888999999988875 6667888887777777788888888877665431 222221
Q ss_pred -CCcHHHHHHHHHHHHHcCCCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695 317 -QGRIEEAKELVNQMSQMGCIP--DVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEA 393 (701)
Q Consensus 317 -~g~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 393 (701)
.|..-.+..+....+..|+.- -..||..-...|.+.+.++-|..+|...++. .+.+...|......--..|..+..
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence 166666666777777666543 2468888888999999999999999988875 244667888888777788999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 394 REMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK 473 (701)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 473 (701)
..+|++.... ++.....|......+-..|++..|..++....+.. +.+...+..-+........++.|..+|.+....
T Consensus 570 ~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 9999999875 34556667777777888999999999999998874 446778888888899999999999999998774
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 037695 474 GCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPD-TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTY 552 (701)
Q Consensus 474 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 552 (701)
.|+...|..-+......++.++|++++++.++. -|+ ...|..+.+.+-+.++++.|...|..-.+. +|-.+..|
T Consensus 648 --sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLW 722 (913)
T KOG0495|consen 648 --SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLW 722 (913)
T ss_pred --CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHH
Confidence 678888888888888889999999999999874 455 457888889999999999999999876664 45567778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695 553 RTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKG 631 (701)
Q Consensus 553 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 631 (701)
..|...--+.|++-.|..++++..-++|. ...|-..+.+=.+.|+.+.|..+..++++. ++.+...|..-|+..-..+
T Consensus 723 llLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~ 801 (913)
T KOG0495|consen 723 LLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQ 801 (913)
T ss_pred HHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcc
Confidence 88888888999999999999999999998 678889999999999999999999999984 5667888888888887777
Q ss_pred ChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695 632 IPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK 687 (701)
Q Consensus 632 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 687 (701)
+-..+++.+++... |+.+...++..+....++++|.++|+++++.++..-+
T Consensus 802 rkTks~DALkkce~-----dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 802 RKTKSIDALKKCEH-----DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred cchHHHHHHHhccC-----CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 77667766655544 7778888999999999999999999999998875544
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=2.7e-14 Score=135.01 Aligned_cols=445 Identities=15% Similarity=0.159 Sum_probs=298.7
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cCChh-HHHHHHHHHHHCCCCCCHHHHHHH
Q 037695 141 PIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSR--AGKLR-NAMYVLSMMQKAAVAPNLLICNTA 217 (701)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l 217 (701)
+.+=|.+++.. ..|..+++--+|+.|...|++.++..-..|+...+- ..++- .-.+.|-.|...| ..+..+|
T Consensus 116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--- 190 (625)
T KOG4422|consen 116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--- 190 (625)
T ss_pred hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence 44556666544 457888899999999999988888877776664332 22322 2235566666665 4454555
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCh
Q 037695 218 IHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRI 297 (701)
Q Consensus 218 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~ 297 (701)
+.|.+.+ -+|+. . +.+..+|.+||.++|+--..+.|.+++++......+.+..+||.+|.+-.-
T Consensus 191 -----K~G~vAd--L~~E~-~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~---- 254 (625)
T KOG4422|consen 191 -----KSGAVAD--LLFET-L----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY---- 254 (625)
T ss_pred -----ccccHHH--HHHhh-c----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----
Confidence 3454433 23332 2 456789999999999999999999999999888778899999999976432
Q ss_pred hHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHcCCCCC
Q 037695 298 KEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQ----AKKMLQQMYHHGCKPN 373 (701)
Q Consensus 298 ~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~~~~~~~~~~ 373 (701)
-...+++.+|....+.||..|+|+++.+..+.|+++. |.+++.+|.+.|+.|.
T Consensus 255 -----------------------~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePs 311 (625)
T KOG4422|consen 255 -----------------------SVGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPS 311 (625)
T ss_pred -----------------------hccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcc
Confidence 1225677788888899999999999999999998764 5678889999999999
Q ss_pred HHHHHHHHHHHHhcCCHHH-HHHHHHHHHh----CCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C
Q 037695 374 TVSYTAFLNGLCHNGKSLE-AREMINTSEE----EWWTP----NAITYSVVMHGLRREGKLSEACDVVREMVKKG----F 440 (701)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~-A~~~~~~~~~----~~~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~----~ 440 (701)
..+|..+|..+++.++..+ +..++.++.. ..++| +...|...+..|.+..+.+-|.++..-+.... +
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 9999999999998887644 4455554433 22233 33456677888888888888887766554321 2
Q ss_pred CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 037695 441 FPTP---VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTY 517 (701)
Q Consensus 441 ~~~~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 517 (701)
.|+. .-|..+....|.....+.....|+.|.-.-.-|+..+...++++....|.++-.-+++..+...|..-+...
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l- 470 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDL- 470 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHH-
Confidence 2332 235666777778888888888888887766677778888888888888888888888888876553222211
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCChhHHHHHHHHHH
Q 037695 518 TTIIDALSKNGRVEEATELMMKMLSKGLVPTVV---TYRTVIHRYCQVGRVEDL-LKLLEKMLSKQKCRTAYNQVIENLC 593 (701)
Q Consensus 518 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~p~~~~~~~l~~~~~ 593 (701)
-.+++..|......|+.. -+.....-|+ . ++.++ ...-.++.+..-.....+.++-.+.
T Consensus 471 ---------------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a-a-d~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 471 ---------------REEILMLLARDKLHPLTPEREQLQVAFAKCA-A-DIKEAYESQPIRQRAQDWPATSLNCIAILLL 533 (625)
T ss_pred ---------------HHHHHHHHhcCCCCCCChHHHHHHHHHHHHH-H-HHHHHHHhhHHHHHhccCChhHHHHHHHHHH
Confidence 123333344333333222 2222221111 1 12222 2222344444444667788888888
Q ss_pred hcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 037695 594 SFGYLEEAGKILGKVLRTAS----KADASTCHVLVESYLNKGIPLLAYKVACRMFNRN 647 (701)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 647 (701)
+.|+.++|.+++.-+.+.+. .|......-++..-.....+..|+.+++-|...+
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 99999999999988866543 2233334455666777788888888888887643
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.79 E-value=1e-13 Score=143.53 Aligned_cols=540 Identities=13% Similarity=0.047 Sum_probs=274.1
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 037695 146 MMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGN 225 (701)
Q Consensus 146 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 225 (701)
.....+...|++++|..++.+.++.. +..+..|-.|...|-..|+.+++...+-.+.... +.|...|..+.......|
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~ 221 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG 221 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc
Confidence 33445556699999999999999975 5688999999999999999999998877766554 677799999999999999
Q ss_pred CHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHH----HHHHHHHcCChhHHH
Q 037695 226 KLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYT----VMGYLCKEKRIKEVR 301 (701)
Q Consensus 226 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~----ll~~~~~~g~~~~a~ 301 (701)
.+++|.-.|.+..+.. +++...+---+..|-+.|+...|...|.++.....+.|..-... +++.+...++.+.|.
T Consensus 222 ~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~ 300 (895)
T KOG2076|consen 222 NINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA 300 (895)
T ss_pred cHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999874 55544444556788999999999999999987633222222222 344555566666666
Q ss_pred HHHHHHHhcCCCCCCC-------------CcHHHHHHHHHHHHHcCCC---------------------------cCHHH
Q 037695 302 DLMEKMVNDSNLFHDQ-------------GRIEEAKELVNQMSQMGCI---------------------------PDVVT 341 (701)
Q Consensus 302 ~~~~~~~~~~~~~~~~-------------g~~~~a~~~~~~~~~~~~~---------------------------p~~~~ 341 (701)
+.++......+..... ..++.|......+...... ++...
T Consensus 301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v 380 (895)
T KOG2076|consen 301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV 380 (895)
T ss_pred HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence 6666554411111100 2333333333333321001 11111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 037695 342 YTAVVNGFCRVGELDQAKKMLQQMYHHGCKP--NTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGL 419 (701)
Q Consensus 342 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 419 (701)
-.++-++.+....+....+...+....+.| +...|.-+..+|...|++..|+.+|..+......-+...|-.+..+|
T Consensus 381 -~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 381 -IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred -HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 011112222233333333333333333111 23344444445555555555555555544433333344444455555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHh
Q 037695 420 RREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLN--------KGCAVNVVNFTSLIRGFCQ 491 (701)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~ll~~~~~ 491 (701)
...|..++|.+.|...+... +.+...-..|...+.+.|+.++|.+.+..+.. .+..|+..........+.+
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~ 538 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQ 538 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHH
Confidence 55555555555555444432 22233333444444445555555554444221 1122223333333344444
Q ss_pred cCCHHHHHHHHHHHHhCC-----CCC-----------------CHHHHHHHHHHHHhcCCHHHHHHH------HHHHHhC
Q 037695 492 KGDLEEALSLLDDMYLCK-----KDP-----------------DTVTYTTIIDALSKNGRVEEATEL------MMKMLSK 543 (701)
Q Consensus 492 ~g~~~~A~~~~~~~~~~~-----~~p-----------------~~~~~~~li~~~~~~g~~~~A~~~------~~~m~~~ 543 (701)
.|+.++-+.+-.+|.... +-| ...+...++.+-.+.++.....+- +..-...
T Consensus 539 ~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~ 618 (895)
T KOG2076|consen 539 VGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELR 618 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhc
Confidence 444444433333333210 000 000111111111111111100000 0000001
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CC--h-hHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC
Q 037695 544 GLVPTV--VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ----KC--R-TAYNQVIENLCSFGYLEEAGKILGKVLRT-AS 613 (701)
Q Consensus 544 ~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----p~--~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~ 613 (701)
|+..+. ..+.-++.++++.+.+.+|+.+...+.... +. . ..-...+.+.+..+++..|...+..++.. +.
T Consensus 619 ~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~ 698 (895)
T KOG2076|consen 619 GLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQF 698 (895)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Confidence 111111 122344555666666666666666665542 11 1 12233344555666666666666666543 11
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHH
Q 037695 614 ---KADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEE 690 (701)
Q Consensus 614 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 690 (701)
..-...|+.......+.|+-.--...+..+...+..-+...+...+..+...+.+.-|..+|-++...+|.+|-...
T Consensus 699 ~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl 778 (895)
T KOG2076|consen 699 YLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINL 778 (895)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHH
Confidence 11123333333344444433322333333333222211222223334456688999999999999999998887543
No 32
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.77 E-value=5.4e-15 Score=140.49 Aligned_cols=483 Identities=13% Similarity=0.104 Sum_probs=318.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCHhHHHHHHHHHHhCCCCCCh------H
Q 037695 175 RPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICN-TAIHVLVVGNKLAKALRFLERMQLAGITPNV------L 247 (701)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~ 247 (701)
+-.+...|.+-|.......+|+..|+-+.+....|+..... .+...+.+...+.+|+++++..... .|++ .
T Consensus 200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldq--vpsink~~rik 277 (840)
T KOG2003|consen 200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQ--VPSINKDMRIK 277 (840)
T ss_pred hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhh--ccccchhhHHH
Confidence 44455556667777788889999999888777777765433 3445677788889999988877754 3332 2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHH
Q 037695 248 TYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELV 327 (701)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~ 327 (701)
+.+.+.-.+.+.|+++.|+..|+...+. .|+..+-..|+-++.-.|+-+...+.|..|....+ .++...+
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~-~~dddky------- 347 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPG-EIDDDKY------- 347 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCC-CCCcccc-------
Confidence 3444555677889999999999988765 67877665666666667888888888888876332 2222100
Q ss_pred HHHHHcCCCcCHHHHHHHHH-----HHHhcC--CHHHHHHHHHHHHHcCCCCCHH---------------------HHHH
Q 037695 328 NQMSQMGCIPDVVTYTAVVN-----GFCRVG--ELDQAKKMLQQMYHHGCKPNTV---------------------SYTA 379 (701)
Q Consensus 328 ~~~~~~~~~p~~~~~~~li~-----~~~~~g--~~~~a~~~~~~~~~~~~~~~~~---------------------~~~~ 379 (701)
.+..-.|+....+..|. -.-+.+ +-++++-.-..+..--+.|+-. .=..
T Consensus 348 ---i~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ 424 (840)
T KOG2003|consen 348 ---IKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEIN 424 (840)
T ss_pred ---cCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhh
Confidence 00001122222222111 111110 1111111111111111111110 0011
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695 380 FLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHG-LRR-EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE 457 (701)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~-~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 457 (701)
-...|.++|+++.|.+++.-+.+..-..-...-+.|-.. |.+ ..++..|...-+..+... .-++.....-.......
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeec
Confidence 123477899999999999888765322222222222222 222 346677777666655443 33444443333444568
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695 458 GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELM 537 (701)
Q Consensus 458 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 537 (701)
|++++|...|++.+..........|| +.-.+-..|++++|+..|-.+..- +..+..+...+...|....+...|++++
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 99999999999998873332333333 334567889999999999887542 2346677778888999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695 538 MKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD 616 (701)
Q Consensus 538 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 616 (701)
.+.... ++.|+..+..|...|-+.|+-..|.+.+-.-....|. ..+...|+.-|....-+++|+.+|+++.- +.|+
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 888765 6778999999999999999999999988877777777 67888888888888999999999998743 5889
Q ss_pred HHHHHHHHHH-HHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 617 ASTCHVLVES-YLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVE 680 (701)
Q Consensus 617 ~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (701)
..-|..++.. +.+.|+++.|+++|+..+++-+. |..+..-+.+.+...|- .+|.++-.++.+
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpe-dldclkflvri~~dlgl-~d~key~~klek 721 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLGL-KDAKEYADKLEK 721 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhccccc-hhHHHHHHHHHH
Confidence 9999888875 55679999999999999985333 67888888888877775 456666665544
No 33
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.74 E-value=1.2e-13 Score=130.62 Aligned_cols=366 Identities=15% Similarity=0.160 Sum_probs=218.8
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 037695 138 RHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTA 217 (701)
Q Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 217 (701)
|.+..+|..+|.++++-...+.|.+++.+........+..+||.+|.+-+-.. ..++..+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHH
Confidence 45566788888888888888888888888777767778888888877644322 26777788777778888888888
Q ss_pred HHHHHccCCHhHH----HHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhH-HHHHHHHchh----CCCCC----CHHHH
Q 037695 218 IHVLVVGNKLAKA----LRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKD-AIKLIDEMPL----KGCSP----DKVSY 284 (701)
Q Consensus 218 l~~~~~~g~~~~A----~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~----~g~~p----d~~~~ 284 (701)
+++.++.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.. +.++| |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 8888888876544 4667778888888888888888888887776643 4444444332 22222 34456
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhcCCHHHHHHH
Q 037695 285 YTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPD---VVTYTAVVNGFCRVGELDQAKKM 361 (701)
Q Consensus 285 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~ 361 (701)
...++.|.+..+.+-|.++...+....+. . -+.|+ ...|..+....|.....+.....
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~-------~------------~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNW-------K------------FIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCch-------h------------hcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777766666666555431110 0 01222 23456677777777788888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 362 LQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFF 441 (701)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~ 441 (701)
|..|.-.-+-|+..+...++++....|.++-..+++..+...|...+. +-..+++..|......
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~----------------~l~eeil~~L~~~k~h 484 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRS----------------DLREEILMLLARDKLH 484 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhH----------------HHHHHHHHHHhcCCCC
Confidence 888887767778888888888877778887777777777765422221 2222344444444333
Q ss_pred CCHHHHHHHHHHHHhc-CCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C---CCHH
Q 037695 442 PTPVEINLLIQSLCRE-GKMDGA-KKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK-D---PDTV 515 (701)
Q Consensus 442 ~~~~~~~~li~~~~~~-g~~~~a-~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~---p~~~ 515 (701)
|+...-..+-...+++ -++.++ ...-.++.+. .......+.++-.+.+.|..++|.++|.-+.+.+- - |...
T Consensus 485 p~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~ln 562 (625)
T KOG4422|consen 485 PLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLN 562 (625)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchh
Confidence 3322111111111111 011111 1111223322 23344555556666677777777777776644331 1 2222
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037695 516 TYTTIIDALSKNGRVEEATELMMKMLSKG 544 (701)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (701)
...-+++.-.+.+.+..|..+++-|...+
T Consensus 563 Am~El~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 563 AMAELMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 23334444455566666666666665544
No 34
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.74 E-value=2.2e-11 Score=117.10 Aligned_cols=465 Identities=12% Similarity=0.090 Sum_probs=288.7
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 037695 143 VYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNL-LICNTAIHVL 221 (701)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~ 221 (701)
.|-...+--...+++..|..+|+....-. ..+...|...+.+=.+...+..|..+++..+.. -|.+ ..|-..+..=
T Consensus 75 ~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 75 VWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHH
Confidence 34444444444556666777777666544 235566666666666777777777777776653 2322 2344444444
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 037695 222 VVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVR 301 (701)
Q Consensus 222 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~ 301 (701)
-..|++..|.++|+...+. .|+...|++.|+.-.+.+.++.|..+++...-. .|+..+|.....-=-+.|....+.
T Consensus 152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR 227 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALAR 227 (677)
T ss_pred HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHH
Confidence 4567777777777776654 677777777777777777777777777776643 577777766666666666666666
Q ss_pred HHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHH
Q 037695 302 DLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPN--TVSYTA 379 (701)
Q Consensus 302 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ 379 (701)
.+|+..... |.. -.-+...+.+....=.++..++.|.-+|+-.+++ ++.+ ...|..
T Consensus 228 ~VyerAie~----------------~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~ 285 (677)
T KOG1915|consen 228 SVYERAIEF----------------LGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKK 285 (677)
T ss_pred HHHHHHHHH----------------hhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHH
Confidence 666655431 000 0012223444444444556677777777776664 2222 334444
Q ss_pred HHHHHHhcCCHHHHHHH--------HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------
Q 037695 380 FLNGLCHNGKSLEAREM--------INTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPV------ 445 (701)
Q Consensus 380 li~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~------ 445 (701)
+...--+-|+....... ++.+...+ +-|-.+|-..++.-...|+.+...++|+..+.+ ++|-..
T Consensus 286 ~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~R 363 (677)
T KOG1915|consen 286 YTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRR 363 (677)
T ss_pred HHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHH
Confidence 44433344543333222 23333332 456667777777777778888888888887766 344221
Q ss_pred -HHHHH---HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 037695 446 -EINLL---IQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGF----CQKGDLEEALSLLDDMYLCKKDPDTVTY 517 (701)
Q Consensus 446 -~~~~l---i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 517 (701)
.|.-+ +-.-....+++.+.++|+.+++. +|....||..+--.| .++.++..|.+++-..+. ..|...+|
T Consensus 364 YIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlF 440 (677)
T KOG1915|consen 364 YIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLF 440 (677)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHH
Confidence 11111 11113467888888888888875 555666665554444 457788888888877753 56788888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHH
Q 037695 518 TTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLC 593 (701)
Q Consensus 518 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~ 593 (701)
...|..-.+.++++....+|++.++.+ |-+..+|......-...|+.+.|..+|+-+++. |. ...|.+.++.=.
T Consensus 441 k~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q-p~ldmpellwkaYIdFEi 518 (677)
T KOG1915|consen 441 KGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQ-PALDMPELLWKAYIDFEI 518 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC-cccccHHHHHHHhhhhhh
Confidence 888888888888888888888888865 556777877777777888888888888888764 33 235666677667
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----hcC-----------ChhhHHHHHHHHHh
Q 037695 594 SFGYLEEAGKILGKVLRTASKADASTCHVLVESYL-----NKG-----------IPLLAYKVACRMFN 645 (701)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 645 (701)
..|.++.|..+++.+++.. +...+|.+++..-. +.| +...|..+|+++..
T Consensus 519 ~~~E~ekaR~LYerlL~rt--~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 519 EEGEFEKARALYERLLDRT--QHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hcchHHHHHHHHHHHHHhc--ccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 7888888888888888764 33446655554322 223 44567777776655
No 35
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=9.6e-12 Score=119.55 Aligned_cols=471 Identities=13% Similarity=0.088 Sum_probs=348.6
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChH-HHHHH
Q 037695 174 CRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVL-TYNCL 252 (701)
Q Consensus 174 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~l 252 (701)
.+...|......=...+++..|..+|+.+.... ..+...|-.-+.+=.++..+..|..+++..... -|-+. .|---
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY 147 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence 355566666666667788889999999998765 677788888888888999999999999998875 34332 23333
Q ss_pred HHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHH
Q 037695 253 IKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQ 332 (701)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~ 332 (701)
+.+--..|++..|.++|+.-... .|+...|.+.|..=.+-+.++.|..++++.+-
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~----------------------- 202 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL----------------------- 202 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-----------------------
Confidence 44555689999999999998876 89999999999999999888888888888765
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--
Q 037695 333 MGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHH-G-CKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPN-- 408 (701)
Q Consensus 333 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-- 408 (701)
+.|++.+|--....=.+.|.+..+..+|....+. | -..+...+.+...--.++..++.|.-+|.-.+..- +.+
T Consensus 203 --~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~ra 279 (677)
T KOG1915|consen 203 --VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRA 279 (677)
T ss_pred --ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccH
Confidence 5699999999998889999999999999988763 1 01123344455444456678889999998887753 333
Q ss_pred hhhHHHHHHHHHhcCCH---HHHHH-----HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-
Q 037695 409 AITYSVVMHGLRREGKL---SEACD-----VVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNV- 479 (701)
Q Consensus 409 ~~~~~~ll~~~~~~g~~---~~A~~-----~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~- 479 (701)
...|..+...--+-|+. +.++- -++.++..+ +.|-.+|--.++.-...|+.+...++|+.+... ++|-.
T Consensus 280 eeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~e 357 (677)
T KOG1915|consen 280 EELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASE 357 (677)
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhH
Confidence 33444444333344543 33332 233444443 567778888888888899999999999999886 55522
Q ss_pred -HHHHHHH--------HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhCCCC
Q 037695 480 -VNFTSLI--------RGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDAL----SKNGRVEEATELMMKMLSKGLV 546 (701)
Q Consensus 480 -~~~~~ll--------~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~ 546 (701)
..|.-.| -.-....+.+.+.++|+..++. ++....||..+=-.| .+..+...|.+++...+ |..
T Consensus 358 kr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~c 434 (677)
T KOG1915|consen 358 KRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKC 434 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccC
Confidence 1122111 1123468899999999999883 455566665543333 46788999999998876 568
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHH
Q 037695 547 PTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS-KADASTCHVLV 624 (701)
Q Consensus 547 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~ 624 (701)
|...++...|..-.+.++++....++++.+.-+|. -.+|...+..=...|+.+.|..+|.-+++.+. ......|...|
T Consensus 435 PK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 435 PKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYI 514 (677)
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 99999999999999999999999999999999987 67888888888899999999999999987542 22245677778
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHHcC
Q 037695 625 ESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLI-----LEG-----------KSEEADTLMLRFVERG 682 (701)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~ 682 (701)
..-...|.++.|..+|+++++. .+...++-..+.--. +.| ....|..+|+++....
T Consensus 515 dFEi~~~E~ekaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 8888899999999999999993 444445554443322 334 5677888888875543
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.73 E-value=1.5e-13 Score=130.75 Aligned_cols=478 Identities=12% Similarity=0.060 Sum_probs=312.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHHcCChhHHHHHHHHHHHCCCCC----CHHHHHHH
Q 037695 143 VYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAF-SYLMVAYSRAGKLRNAMYVLSMMQKAAVAP----NLLICNTA 217 (701)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l 217 (701)
+...+...|..+....+|+..++-+.+...-|+.... ..+...+.+...+.+|++.|+.....-... .+...+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3445566677778888999999988887766665443 335566778889999999999887542111 22345555
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCC------------CHHHHH
Q 037695 218 IHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSP------------DKVSYY 285 (701)
Q Consensus 218 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------------d~~~~~ 285 (701)
...+.+.|+++.|+..|+...+. .||..+--.|+-++..-|+-++..+.|..|...-..| +....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 66678999999999999998876 6887776666667778899999999999987543222 333222
Q ss_pred HHH-----HHHHHcCCh--hHHHHHHHHHHhcCCCCCCC-CcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH
Q 037695 286 TVM-----GYLCKEKRI--KEVRDLMEKMVNDSNLFHDQ-GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQ 357 (701)
Q Consensus 286 ~ll-----~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~-g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 357 (701)
.-| .-+-+.++. +.+.-.--.+.. .-+.|+- -..+=.++.+..-.-. +.-...--.-...+.+.|+++.
T Consensus 361 eai~nd~lk~~ek~~ka~aek~i~ta~kiia-pvi~~~fa~g~dwcle~lk~s~~~--~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 361 EAIKNDHLKNMEKENKADAEKAIITAAKIIA-PVIAPDFAAGCDWCLESLKASQHA--ELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhc-cccccchhcccHHHHHHHHHhhhh--hhhhhhhhhHHHHHHhccCHHH
Confidence 222 111111111 111111111111 0111110 0011111111111100 0000011112335789999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 358 AKKMLQQMYHHGCKPNTVSYTAFLNGLCH--NGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREM 435 (701)
Q Consensus 358 a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 435 (701)
|+++++-+.+..-+.-...-+.|...+.- ..++..|..+-+...... .-+......-.......|++++|.+.|++.
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykea 516 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEA 516 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHH
Confidence 99999988875433333333333333222 345777777666554321 122222222222334578999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 037695 436 VKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTV 515 (701)
Q Consensus 436 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (701)
+...-.-. ..+-.+.-.+-+.|++++|+..|-++... +..+..+...+...|-...+...|++++.+.... ++.|+.
T Consensus 517 l~ndasc~-ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ 593 (840)
T KOG2003|consen 517 LNNDASCT-EALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPA 593 (840)
T ss_pred HcCchHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHH
Confidence 87742222 22223344567889999999999876543 3347777888889999999999999999887653 566788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHH-HHHh
Q 037695 516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIE-NLCS 594 (701)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~-~~~~ 594 (701)
....|...|-+.|+-..|.+.+-.--.. ++.+..+...|..-|....-+++|+.+|+++.-.+|+..-|..++. ++.+
T Consensus 594 ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 594 ILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 9999999999999999999876544333 5778899988998899999999999999999989999888877654 5557
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695 595 FGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKG 631 (701)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 631 (701)
.|++.+|..+|+...+ .++-|..++.-|++.+...|
T Consensus 673 sgnyqka~d~yk~~hr-kfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred cccHHHHHHHHHHHHH-hCccchHHHHHHHHHhcccc
Confidence 8999999999999876 45668888888887776666
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=2.3e-13 Score=131.14 Aligned_cols=223 Identities=15% Similarity=0.097 Sum_probs=171.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695 454 LCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEA 533 (701)
Q Consensus 454 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 533 (701)
+.-.|+.-.|..-|+..+.....+ ...|--+..+|....+.++.++.|+...... +-++.+|-.-.+.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 344678888888888888764332 2336667778888899999999999888754 34567777777778888899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 534 TELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTA 612 (701)
Q Consensus 534 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (701)
..-|++.+... +-+...|..+..+..+.+++++++..|++...+.|+ +..|+..+.++...+++++|.+.|+.++++.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 99999988764 445667777777778889999999999999999888 8889999999999999999999999998875
Q ss_pred CCC-----CHH--HHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 613 SKA-----DAS--TCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 613 ~~~-----~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
+.. ++. +-..++-.-. .+++..|+.++.++.+ +.|.. ..|..++...++.|+.++|+++|++.....
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred cccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 431 122 2222222222 3788899999999988 55554 678889999999999999999998876644
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=2.5e-12 Score=123.42 Aligned_cols=348 Identities=11% Similarity=0.029 Sum_probs=242.3
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hh
Q 037695 334 GCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNA--IT 411 (701)
Q Consensus 334 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~ 411 (701)
+..-|...+-...-.+.+.|....|+..|...... .+..-..|..|.... .+.+.+.. ... +.+.+. ..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~~~----l~~-~l~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEILSI----LVV-GLPSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHHHH----HHh-cCcccchHHH
Confidence 33445555544555567788899999998887754 233444444443322 22222222 221 112111 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHH
Q 037695 412 YSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGC--AVNVVNFTSLIRGF 489 (701)
Q Consensus 412 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~ 489 (701)
=-.+..++....+.++++.-...+...|++.+...-+....+.-...+++.|+.+|+++.+... -.|..+|..++-.-
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~ 309 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence 1124456666778888888888888888877776666666677788899999999999988721 11456666555332
Q ss_pred HhcCCHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695 490 CQKGDLE-EALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDL 568 (701)
Q Consensus 490 ~~~g~~~-~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 568 (701)
-.+.++. -|..+++ + -+-.+.|..++.+-|+-.++.++|..+|++.++.+ +-....|+.+.+-|....+...|
T Consensus 310 ~~~skLs~LA~~v~~-i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 310 NDKSKLSYLAQNVSN-I----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred hhhHHHHHHHHHHHH-h----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 2211111 1222211 1 12334566777788888899999999999999875 44567788888999999999999
Q ss_pred HHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 037695 569 LKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRN 647 (701)
Q Consensus 569 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 647 (701)
++-+++++..+|. -.+|-.|+.+|...+...=|+-.|+++.+..+ -|+..|.+|+.+|.+.++.++|++.|+++..-|
T Consensus 384 i~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 384 IESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 9999999999887 78999999999999999999999999988764 488999999999999999999999999998854
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhhhhhh
Q 037695 648 LIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQRQRVF 698 (701)
Q Consensus 648 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 698 (701)
-. +...+..+++.|-+.++.++|..+|++.++.....-....+....+.|
T Consensus 463 dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~f 512 (559)
T KOG1155|consen 463 DT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLF 512 (559)
T ss_pred cc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 33 557888899999999999999999999988553223334444444444
No 39
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.67 E-value=4.1e-16 Score=153.08 Aligned_cols=262 Identities=23% Similarity=0.220 Sum_probs=112.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695 414 VVMHGLRREGKLSEACDVVREMVKKG-FFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQK 492 (701)
Q Consensus 414 ~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 492 (701)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|...++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 44667778888888888886554443 2334444555566667788888888888888776433 55566666666 688
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695 493 GDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK-GLVPTVVTYRTVIHRYCQVGRVEDLLKL 571 (701)
Q Consensus 493 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 571 (701)
+++++|.+++....+. .++...+..++..+...++++++..+++.+... ..+++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999998877653 356667778888899999999999999997754 2356777888888999999999999999
Q ss_pred HHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 037695 572 LEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP 650 (701)
Q Consensus 572 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 650 (701)
++++++..|+ ..+...++..+...|+.+++..++....+.. +.|+..+..++.+|...|++++|+..+++..+.+..
T Consensus 169 ~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~- 246 (280)
T PF13429_consen 169 YRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD- 246 (280)
T ss_dssp HHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc-
Confidence 9999999998 7788899999999999999888888887764 456677888999999999999999999999984333
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 651 DLKLCKKVSERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 651 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
|+.+...++.++...|+.++|..++.++.+.
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp -HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 6788889999999999999999999887653
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=9.3e-12 Score=119.56 Aligned_cols=305 Identities=10% Similarity=-0.006 Sum_probs=222.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcC
Q 037695 381 LNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGF--FPTPVEINLLIQSLCREG 458 (701)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~~~~~~~~~li~~~~~~g 458 (701)
..++....+.+++..-.......|++.+...-+....+.-...++++|+.+|+++.++.. -.|..+|+.++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 345555567777777777777777655555555555556677888888888888888731 124456666553322211
Q ss_pred CHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695 459 KMD-GAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELM 537 (701)
Q Consensus 459 ~~~-~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 537 (701)
.+. .|..++. + .+--+.|...+.+-|.-.++.++|...|++..+.+ +.....|+.+.+-|...++...|++-|
T Consensus 314 kLs~LA~~v~~-i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY 387 (559)
T KOG1155|consen 314 KLSYLAQNVSN-I----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY 387 (559)
T ss_pred HHHHHHHHHHH-h----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence 111 1111111 1 12245567777888888899999999999998854 334577888889999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695 538 MKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD 616 (701)
Q Consensus 538 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 616 (701)
++.++.. |-|-..|..|..+|.-.+...=|+-+|+++.+..|+ ...|.+|+.+|.+.++.++|++.|..++..+ ..+
T Consensus 388 RrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 388 RRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 9999864 668889999999999999999999999999998888 7899999999999999999999999998876 447
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhC----C-CCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHH
Q 037695 617 ASTCHVLVESYLNKGIPLLAYKVACRMFNR----N-LIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEE 690 (701)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 690 (701)
...+..|+..|-+.++..+|..+|++.++. | +.|. ..+..-++.-+.+.+++++|..+......-++.......
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~ 545 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKA 545 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHH
Confidence 788889999999999999999999888772 2 2332 244444667778899999999988887776543333333
Q ss_pred HHh
Q 037695 691 HLQ 693 (701)
Q Consensus 691 ~l~ 693 (701)
.+|
T Consensus 546 LlR 548 (559)
T KOG1155|consen 546 LLR 548 (559)
T ss_pred HHH
Confidence 333
No 41
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=4.9e-12 Score=124.57 Aligned_cols=280 Identities=13% Similarity=0.042 Sum_probs=170.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037695 373 NTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQ 452 (701)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~ 452 (701)
++........-+...+++.+..++++...+.. +++...+..-|.++...|+..+...+-.+|.+. .|..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 33344444555566677777777777766643 555556666666666777766666666666665 2445566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037695 453 SLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEE 532 (701)
Q Consensus 453 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 532 (701)
.|...|+..+|.++|.+..... +.-...|-.+.+.|+-.|..+.|+..+....+. ++-...-+-.+.--|.+.++.+-
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 6666677777777777665442 112445666677777777777777766655442 11111112223344666677777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----C----hhHHHHHHHHHHhcCCHHHHHHH
Q 037695 533 ATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK----C----RTAYNQVIENLCSFGYLEEAGKI 604 (701)
Q Consensus 533 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~----~~~~~~l~~~~~~~g~~~~A~~~ 604 (701)
|.++|.+..... |-|+..++-+.-.....+.+.+|..+|+..+..-+ . .++++.|+.+|.+.+++++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 777776666542 44566666666656666677777777766653311 1 34566677777777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037695 605 LGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSE 660 (701)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 660 (701)
+++++... +.+..++.+++..|...|+++.|++.|.+.+- +.|+..+...++.
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 77777655 33666777777777777777777777777766 6666655554444
No 42
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.66 E-value=7.1e-10 Score=110.95 Aligned_cols=543 Identities=13% Similarity=0.076 Sum_probs=331.5
Q ss_pred HHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 037695 112 CAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGK 191 (701)
Q Consensus 112 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 191 (701)
++++-.+++.-.-.+.|+.+.+..+.......|...+......+-++-+..+++...+ .+|..-+-.|..++..++
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~ 184 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDR 184 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccc
Confidence 4555566666666777776666555444455788888888888888899999988876 456667788888889999
Q ss_pred hhHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHccCCHh---HHHHHHHHHHhCCCCCC--hHHHHHHHHHHHhcC
Q 037695 192 LRNAMYVLSMMQKA------AVAPNLLICNTAIHVLVVGNKLA---KALRFLERMQLAGITPN--VLTYNCLIKGYCDLH 260 (701)
Q Consensus 192 ~~~A~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~g~~~---~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~g 260 (701)
+++|.+.+...... ..+.+-..|..+....++.-+.- ....+++.+... -+| -..|++|.+.|.+.|
T Consensus 185 ~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 185 LDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred hHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhh
Confidence 99999988877532 12445556777666666553322 233445554433 344 346899999999999
Q ss_pred ChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcC------
Q 037695 261 RIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMG------ 334 (701)
Q Consensus 261 ~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~------ 334 (701)
.+++|..+|++.... ......|..+.+.|+.-....-+..+ +......+-..+.-+++-.+.-|+.+...+
T Consensus 263 ~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNs 339 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEEDDVDLELHMARFESLMNRRPLLLNS 339 (835)
T ss_pred hhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHH
Confidence 999999999988765 34556677777777653221111111 100000111112234445555555554432
Q ss_pred -----CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037695 335 -----CIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPN------TVSYTAFLNGLCHNGKSLEAREMINTSEEE 403 (701)
Q Consensus 335 -----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 403 (701)
-+.++..|..-+. +..|+..+....|.+.... +.|. ...|..+...|-.+|+++.|..+|++..+.
T Consensus 340 VlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 340 VLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 1123334433332 3356667777777777653 2221 345778888888899999999999888775
Q ss_pred CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----------C------CHHHHHHHHHHHHhcCCHHHH
Q 037695 404 WWTPN---AITYSVVMHGLRREGKLSEACDVVREMVKKGFF-----------P------TPVEINLLIQSLCREGKMDGA 463 (701)
Q Consensus 404 ~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-----------~------~~~~~~~li~~~~~~g~~~~a 463 (701)
..+-- ..+|..-...-.+..+++.|+.+++......-. + +...|...++.--..|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 43211 233444445555677888888887766543111 1 123455556666667888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHH
Q 037695 464 KKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT-VTYTTIIDALSK---NGRVEEATELMMK 539 (701)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~---~g~~~~A~~~~~~ 539 (701)
..+|+.+.+..+. ++.........+-.+.-++++.++|++-...-..|+. ..|+..+.-+.+ ..+.+.|..+|++
T Consensus 497 k~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 497 KAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999988887544 2222222233344566688888888876654444554 356666555543 3468889999999
Q ss_pred HHhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhcCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 540 MLSKGLVPTVVTYRTVI--HRYCQVGRVEDLLKLLEKMLSKQKC---RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK 614 (701)
Q Consensus 540 m~~~~~~p~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 614 (701)
.++ |++|...-+..|+ ..--+.|....|+.+++++...-+. ..+|+..+.-....=-+.....+|+++++.-
T Consensus 576 aL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L-- 652 (835)
T KOG2047|consen 576 ALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL-- 652 (835)
T ss_pred HHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC--
Confidence 988 6666533222222 2223568888899999987765433 3456655544333222344566777777652
Q ss_pred CCHH---HHHHHHHHHHhcCChhhHHHHHHHHHh-CCCCCCHhhHHHHHHHHHhcCCHHH
Q 037695 615 ADAS---TCHVLVESYLNKGIPLLAYKVACRMFN-RNLIPDLKLCKKVSERLILEGKSEE 670 (701)
Q Consensus 615 ~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~ 670 (701)
|+.. .+--+...=++.|..+.|..+|.-..+ .++..+...|...-.-=+++|+-+.
T Consensus 653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 3332 233445566778888888888876655 2334445667766666677787443
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=1.1e-12 Score=134.77 Aligned_cols=284 Identities=10% Similarity=0.053 Sum_probs=180.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHH
Q 037695 387 NGKSLEAREMINTSEEEWWTPNAIT-YSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEIN--LLIQSLCREGKMDGA 463 (701)
Q Consensus 387 ~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~--~li~~~~~~g~~~~a 463 (701)
.|+++.|.+.+....+.. +++.. |.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 466666666665544431 12222 222233346667777777777776654 34433222 224556667777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 037695 464 KKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT-------VTYTTIIDALSKNGRVEEATEL 536 (701)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~ 536 (701)
...++.+.+.. |-+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 77777776653 445666666777777777777777777777765543222 1222333333333444555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695 537 MMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD 616 (701)
Q Consensus 537 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 616 (701)
++.+... .+.++.....+..++...|+.++|.+.+++..+..|++... ++......++.+++.+.+++.++..+ -|
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P-~~ 327 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG-DT 327 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCC-CC
Confidence 5554332 34567777778888888888888888888887765554322 22233345788888888888877653 36
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 617 ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
+..+..++..+...|++.+|.+.|+++.+ ..|+...+..++.++.+.|+.++|..+|++....
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66777788888888888888888888887 6777777778888888888888888888777553
No 44
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=1.1e-12 Score=135.67 Aligned_cols=289 Identities=10% Similarity=0.047 Sum_probs=193.7
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 037695 386 HNGKSLEAREMINTSEEEWWTPNA-ITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTP--VEINLLIQSLCREGKMDG 462 (701)
Q Consensus 386 ~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~ 462 (701)
..|+++.|.+.+....+. .|+. ..+-....+..+.|+.+.|...+.+..+.. |+. .........+...|+++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHH
Confidence 457777777777666554 2332 233344556666777777777777776542 332 233334666677788888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHHH
Q 037695 463 AKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYT-TIID---ALSKNGRVEEATELMM 538 (701)
Q Consensus 463 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-~li~---~~~~~g~~~~A~~~~~ 538 (701)
|...++.+.+.. |-+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-.. .+...+..+.+...+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 888887777763 446667777778888888888888888888776543 322221 1111 1122333333344555
Q ss_pred HHHhCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 539 KMLSKG---LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTA---YNQVIENLCSFGYLEEAGKILGKVLRTA 612 (701)
Q Consensus 539 ~m~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (701)
.+.+.. .+.++..+..++..+...|+.++|.+.+++.++..|+... ...........++.+.+.+.+++.++..
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 555432 1237788888888999999999999999999988887432 1112222234577888888888888765
Q ss_pred CCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 613 SKADA--STCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 613 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
+. |+ ....++++.+.+.|++++|.+.+++.......|+...+.+++..+.+.|+.++|.+++++....
T Consensus 330 p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 330 DD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33 55 6677899999999999999999995333336788877889999999999999999999887543
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.6e-11 Score=120.98 Aligned_cols=268 Identities=13% Similarity=0.055 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 037695 338 DVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMH 417 (701)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 417 (701)
+......-.+-|...+++.+..++...+.+.. +++...+..-|.++...|+..+-..+=.++.+. .+....+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 33444444455555566666666666655542 334444444455555555555555555555543 2444555666665
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037695 418 GLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEE 497 (701)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 497 (701)
-|...|+..+|.+.|.+..... +.-...|..+...|+-.|.-+.|...+..+.+. ++-...-+--+.--|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 5555666666666665544432 112334555556666666666666665555443 11111112223334555566666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCC----CCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695 498 ALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK--GLV----PTVVTYRTVIHRYCQVGRVEDLLKL 571 (701)
Q Consensus 498 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~----p~~~~~~~l~~~~~~~g~~~~A~~~ 571 (701)
|.++|.+..... +-|+..++-+.-.....+.+.+|..+|+..+.. .+. --..+++.|.++|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 666666555421 233444555554445555666666666555421 000 1123455556666666666666666
Q ss_pred HHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 572 LEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLR 610 (701)
Q Consensus 572 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 610 (701)
+++.+...|. ..++.+++.+|...|+++.|+..|.+++-
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 6666655554 55566666666666666666666666554
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=1.6e-13 Score=137.84 Aligned_cols=287 Identities=10% Similarity=0.022 Sum_probs=217.9
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695 389 KSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKG--FFPTPVEINLLIQSLCREGKMDGAKKF 466 (701)
Q Consensus 389 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~ 466 (701)
+..+|...|..+... +.-.......+..+|...+++++|..+|+.+.+.. ..-+..+|.+.+.-+-+ +-+..+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 346777777774443 23333555667778888888888888888887752 12245566666654432 112222
Q ss_pred HH-HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037695 467 MQ-ECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDP-DTVTYTTIIDALSKNGRVEEATELMMKMLSKG 544 (701)
Q Consensus 467 ~~-~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (701)
+. .+.+. .+..+.+|.++.++|.-+++++.|++.|++..+ +.| ...+|+.+..-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 22 22222 355788999999999999999999999999887 455 56788888888888999999999998887532
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695 545 LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVL 623 (701)
Q Consensus 545 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 623 (701)
+-+-.+|.-+.-.|.+.++++.|+-.|+++++.+|. ..+...++..+.+.|+.++|+++++++...+++ |+..-...
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 223445566677889999999999999999999998 567778888899999999999999999887755 66666678
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695 624 VESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK 687 (701)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 687 (701)
+..+...+++++|+..++++.+ +.|+. .++..++.+|.+.|+.+.|+.-|.=+.+..|+...
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence 8888999999999999999988 77765 78888899999999999999999888888775544
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=3.2e-12 Score=132.15 Aligned_cols=288 Identities=14% Similarity=0.103 Sum_probs=211.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--hHHHHHHHHHhcCCHH
Q 037695 350 CRVGELDQAKKMLQQMYHHGCKPNT-VSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAI--TYSVVMHGLRREGKLS 426 (701)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~ 426 (701)
...|+++.|.+.+....+. .|+. ..+-....+....|+++.|..++.+..+.. |+.. ........+...|+++
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence 4578999999999887765 3443 333444567778899999999998887653 4442 3334577788899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHH---HHhcCCHHHHHHHH
Q 037695 427 EACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFT-SLIRG---FCQKGDLEEALSLL 502 (701)
Q Consensus 427 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~---~~~~g~~~~A~~~~ 502 (701)
.|...++.+.+.. |-++..+..+...+...|+++.|..++..+.+.+.. +...+. .-..+ ....+..+.+...+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999998885 556778888899999999999999999999887644 333221 11111 12233333334455
Q ss_pred HHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH--H-HHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 503 DDMYLCKK---DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVT--Y-RTVIHRYCQVGRVEDLLKLLEKML 576 (701)
Q Consensus 503 ~~~~~~~~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~g~~~~A~~~~~~~~ 576 (701)
..+..... +.+...+..+...+...|+.++|.+++++..+.. |+... + ....-.....++.+.+.+.+++..
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 55544321 1377888889999999999999999999999864 33331 1 111122334578899999999999
Q ss_pred hcCCC-h--hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 577 SKQKC-R--TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 577 ~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+..|+ + ....++++.+.+.|++++|.+.|+++......|++..+..++..+.+.|+.++|.+++++.+.
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99888 5 566799999999999999999999644444578888888999999999999999999998765
No 48
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=5.2e-12 Score=129.82 Aligned_cols=220 Identities=12% Similarity=0.062 Sum_probs=112.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHH
Q 037695 418 GLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNV-------VNFTSLIRGFC 490 (701)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~ 490 (701)
.+...|+++.|...++.+.+.. +-++..+..+...|.+.|+++.|..++..+.+.+..++. ..|..++....
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~ 240 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAM 240 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444442 223344444444444444444444444444443222111 12222233333
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037695 491 QKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLK 570 (701)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 570 (701)
...+.+...++++.+.+. .+.+......+..++...|+.++|..++++..+. +|+.... ++.+....++.+++++
T Consensus 241 ~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~ 315 (398)
T PRK10747 241 ADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEK 315 (398)
T ss_pred HhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHH
Confidence 333444444555444322 1334555566666666666666666666666552 3444221 1222334466666666
Q ss_pred HHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 571 LLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 571 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
.+++..+.+|+ +..+..++..+.+.+++++|...|+++++. .|+...+..+...+.+.|+.++|..++++.+.
T Consensus 316 ~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 316 VLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666666 445556666666666666666666666653 45556666666666666666666666666544
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=1.1e-14 Score=143.01 Aligned_cols=261 Identities=15% Similarity=0.168 Sum_probs=95.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695 379 AFLNGLCHNGKSLEAREMINTSEEEW-WTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE 457 (701)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 457 (701)
.+...+.+.|++++|++++....... .+.+...|..+.......++++.|...++++...+ +-++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 33555556666666666664433322 12233334444445555666777777777776654 2244455555555 566
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695 458 GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCK-KDPDTVTYTTIIDALSKNGRVEEATEL 536 (701)
Q Consensus 458 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~ 536 (701)
+++++|..++....+. .++...+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|..+
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777776665443 2355556667777777777777777777765422 234566677777777788888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695 537 MMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA 615 (701)
Q Consensus 537 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 615 (701)
+++.++.. |.|......++..+...|+.+++.++++......|. +..+..++.+|...|+.++|..+++++.+.. +.
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 88877753 335666777777777778888777777777666444 5566777788888888888888888877755 33
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 616 DASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
|+.....++.++...|+.++|..+..++.+
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 777777788888888888888877776654
No 50
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.56 E-value=6.8e-09 Score=104.12 Aligned_cols=512 Identities=12% Similarity=0.083 Sum_probs=323.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcC------CCCCHHHHHHHHH
Q 037695 111 ICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRG------IECRPEAFSYLMV 184 (701)
Q Consensus 111 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~li~ 184 (701)
+...+.+.+-|+-++++++...+ .++..-+-.+..+.+.+++++|.+.+....... .+.+...|..+-.
T Consensus 144 yl~Fv~~~~lPets~rvyrRYLk-----~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcd 218 (835)
T KOG2047|consen 144 YLKFVESHGLPETSIRVYRRYLK-----VAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCD 218 (835)
T ss_pred HHHHHHhCCChHHHHHHHHHHHh-----cCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHH
Confidence 45566667788888888875543 344557777889999999999999998876432 2335556766666
Q ss_pred HHHHcCChhH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC
Q 037695 185 AYSRAGKLRN---AMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHR 261 (701)
Q Consensus 185 ~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~ 261 (701)
..++..+.-. ...+++.+...-...=...|++|...|.+.|.+++|..+|++.... ..++.-|..+.+.|+.-..
T Consensus 219 lis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE 296 (835)
T KOG2047|consen 219 LISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEE 296 (835)
T ss_pred HHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHH
Confidence 6665544332 3334444443211222358999999999999999999999998765 3455667777777765332
Q ss_pred hhHHHHHHHHch-hCCCCCCHHHHHHHHHH---------------HHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHH
Q 037695 262 IKDAIKLIDEMP-LKGCSPDKVSYYTVMGY---------------LCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKE 325 (701)
Q Consensus 262 ~~~A~~~~~~m~-~~g~~pd~~~~~~ll~~---------------~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~ 325 (701)
-.-+..+ +... +.|-+-+...+...+.. ++++ +...+.+..++. ....|+..+-..
T Consensus 297 ~~~~~~m-e~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQ-n~~nV~eW~kRV------~l~e~~~~~~i~ 368 (835)
T KOG2047|consen 297 SCVAAKM-ELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQ-NPHNVEEWHKRV------KLYEGNAAEQIN 368 (835)
T ss_pred HHHHHHH-hhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhc-CCccHHHHHhhh------hhhcCChHHHHH
Confidence 2111111 1011 11111122222111111 1111 111111111110 111266777777
Q ss_pred HHHHHHHcCCCcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 037695 326 LVNQMSQMGCIPD------VVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPN---TVSYTAFLNGLCHNGKSLEAREM 396 (701)
Q Consensus 326 ~~~~~~~~~~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~ 396 (701)
.+.+..+. +.|. ...|..+...|-..|+++.|..+|.+..+-..+-- ..+|..-...-.+..+++.|+++
T Consensus 369 tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~l 447 (835)
T KOG2047|consen 369 TYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKL 447 (835)
T ss_pred HHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 77777654 3332 24678888999999999999999999887543321 34566666677778889999998
Q ss_pred HHHHHhCCCC-----------------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695 397 INTSEEEWWT-----------------PNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGK 459 (701)
Q Consensus 397 ~~~~~~~~~~-----------------~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 459 (701)
++.....--. .+...|+..++..-..|-++....+++.+++..+. ++.......-.+-...-
T Consensus 448 m~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~y 526 (835)
T KOG2047|consen 448 MRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKY 526 (835)
T ss_pred HHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHH
Confidence 8876542111 12334666666667788899999999999987643 44433333333445666
Q ss_pred HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHhcCCHHHH
Q 037695 460 MDGAKKFMQECLNKGCAVNV-VNFTSLIRGFCQ---KGDLEEALSLLDDMYLCKKDPDTVTYTTIID--ALSKNGRVEEA 533 (701)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~--~~~~~g~~~~A 533 (701)
++++.++|++-...-..|++ ..|+..+.-+.+ ...++.|..+|++.++ |.+|...-+-.|+- .--..|-...|
T Consensus 527 feesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~a 605 (835)
T KOG2047|consen 527 FEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHA 605 (835)
T ss_pred HHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 88899988876665334443 467777665554 3478999999999998 66665433322222 22356888999
Q ss_pred HHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh---hHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 534 TELMMKMLSKGLVPT--VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR---TAYNQVIENLCSFGYLEEAGKILGKV 608 (701)
Q Consensus 534 ~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~ 608 (701)
+.+|++.... +++. ...|+..|.--...=-+.....+|+++++.-|+. ...-..+..=++.|.++.|..++...
T Consensus 606 msiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~ 684 (835)
T KOG2047|consen 606 MSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHG 684 (835)
T ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhh
Confidence 9999997664 4443 3356666654444334556778899998887773 34556677778999999999999877
Q ss_pred HHc-CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 609 LRT-ASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 609 ~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
.+. .++.+...|...-..=.++|+- +.++.|++
T Consensus 685 sq~~dPr~~~~fW~twk~FEvrHGne----dT~keMLR 718 (835)
T KOG2047|consen 685 SQICDPRVTTEFWDTWKEFEVRHGNE----DTYKEMLR 718 (835)
T ss_pred hhcCCCcCChHHHHHHHHHHHhcCCH----HHHHHHHH
Confidence 554 4566778888888888899983 35555555
No 51
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=5.7e-11 Score=114.99 Aligned_cols=220 Identities=13% Similarity=0.087 Sum_probs=129.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037695 386 HNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKK 465 (701)
Q Consensus 386 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 465 (701)
-.|+...|..-|+..+.....++ ..|-.+..+|....+.++....|....+.+ +-++.+|..-.+++.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 34666667777776666532222 225556666777777777777777666654 4455566666666666666777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 037695 466 FMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKG- 544 (701)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~- 544 (701)
=|++..... +-++..|-.+.-+..+.+++++++..|++..+. ++.-+..|+.....+...++++.|.+.|+..+...
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 776666652 334555555555556666677777777766553 34445566666666666677777777766666531
Q ss_pred ----CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 545 ----LVPTVVTY--RTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLR 610 (701)
Q Consensus 545 ----~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 610 (701)
+..++..+ -.++-.- -.+++..|..+++++.+.+|. ..++..|+....+.|++++|+++|++...
T Consensus 494 ~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 494 REHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 11111111 1111111 125666666666666666665 45666666666666666666666666543
No 52
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=1.5e-11 Score=112.80 Aligned_cols=291 Identities=14% Similarity=0.145 Sum_probs=222.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHH
Q 037695 386 HNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPT---PVEINLLIQSLCREGKMDG 462 (701)
Q Consensus 386 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~ 462 (701)
-+.+.++|..+|-+|.+.. +.+..+--+|.+.|.+.|..+.|+.+.+.+.+..-.+. ......|.+-|...|-++.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3578899999999999843 33445566788999999999999999999887632221 1245667778889999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 463 AKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT----VTYTTIIDALSKNGRVEEATELMM 538 (701)
Q Consensus 463 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~ 538 (701)
|+.+|..+.+.+ ..-......|+..|-...+|++|+++-.++.+.+..+.. ..|.-|...+....+++.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998753 224556778899999999999999999999886655443 245666677777889999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695 539 KMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD 616 (701)
Q Consensus 539 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 616 (701)
+..+.+ +.....-..+.+.....|+++.|.+.++.+.+.+|. +.+...|..+|...|+.++....+.++.+....++
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 998864 334445556778889999999999999999999988 67888999999999999999999999988654444
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH---hcCCHHHHHHHHHHHHHcCC
Q 037695 617 ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLI---LEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~ 683 (701)
.-..+...-....-.+.|..++.+-+. -+|+...+..++.... ..|.+.+-...+.+|+..-.
T Consensus 284 --~~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 284 --AELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred --HHHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 334455544444456667766666666 5788877777776654 34667888888888876544
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=2e-12 Score=130.03 Aligned_cols=288 Identities=13% Similarity=0.063 Sum_probs=225.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 037695 354 ELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEW--WTPNAITYSVVMHGLRREGKLSEACDV 431 (701)
Q Consensus 354 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~ 431 (701)
+..+|+..|..+..+- .-.......+..+|...+++++|.++|+.+.... ...+...|++.+-.+-+ +-++..
T Consensus 334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 4678888888855542 2233555677888999999999999999887643 12355567666655433 223333
Q ss_pred H-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037695 432 V-REMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK 510 (701)
Q Consensus 432 ~-~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 510 (701)
+ +.++... +-.+.+|.++...|.-.++.+.|++.|++..+.. +....+|+.+.+-+.....+|.|...|+..+...
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~- 485 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD- 485 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence 3 3444443 6678999999999999999999999999998862 2378899999999999999999999999986421
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHH
Q 037695 511 DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVI 589 (701)
Q Consensus 511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~ 589 (701)
..+...|-.|...|.+.++++.|.-.|++..+.+ |-+.+....+...+.+.|+.++|+++++++...+|. +-.-...+
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~ 564 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA 564 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence 1123345557788999999999999999999865 556777888889999999999999999999999887 44555678
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 037695 590 ENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD 651 (701)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 651 (701)
..+...+++++|...++++.+.- +.+..++..++..|.+.|+.+.|+.-|..|.+.++++.
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 88899999999999999998865 33778889999999999999999999999988544443
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.54 E-value=7.9e-11 Score=121.83 Aligned_cols=527 Identities=13% Similarity=0.062 Sum_probs=274.9
Q ss_pred hhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 037695 132 DRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNL 211 (701)
Q Consensus 132 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 211 (701)
....|..|+..+|.++|.-|+..|+.+.|- +|..|.-...+.+...|+.++.+....++.+.+. .|..
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLA 83 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCch
Confidence 456688999999999999999999999998 9998988888888899999999998888877665 6888
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHch-hCCCCCCHHHHHHHHHH
Q 037695 212 LICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMP-LKGCSPDKVSYYTVMGY 290 (701)
Q Consensus 212 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~pd~~~~~~ll~~ 290 (701)
.+|..|+.+|...|++.. .+..++ -.-.++..+...|--.....++..+. ..+.-||..+. +..
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~---ill 148 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENA---ILL 148 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHH---HHH
Confidence 899999999999998765 222222 01111222233333333333333321 11223333221 111
Q ss_pred HHHcCChhHHHHHHHHHHhcCCCCCC-------CCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 291 LCKEKRIKEVRDLMEKMVNDSNLFHD-------QGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQ 363 (701)
Q Consensus 291 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 363 (701)
....|.++.+.+++..+.......|. .-...-..++....+...-.|+..+|..++.+-...|+++.|..++.
T Consensus 149 lv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~ 228 (1088)
T KOG4318|consen 149 LVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLY 228 (1088)
T ss_pred HHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHH
Confidence 22223333333333222110000000 00111112222222221115889999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695 364 QMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPT 443 (701)
Q Consensus 364 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~ 443 (701)
.|.+.|.+.+..-|-.|+-+ .++..-+..++.-|.+.|+.|+..|+...+..+...|....+.... ....-.+
T Consensus 229 emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~s----q~~hg~t 301 (1088)
T KOG4318|consen 229 EMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGS----QLAHGFT 301 (1088)
T ss_pred HHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccccc----chhhhhh
Confidence 99999988888877777765 7788888888999999999999999988887777755422211110 0000011
Q ss_pred HHHHHHHHHHHHhcCCHH-----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC-CHH
Q 037695 444 PVEINLLIQSLCREGKMD-----GAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCK--KDP-DTV 515 (701)
Q Consensus 444 ~~~~~~li~~~~~~g~~~-----~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~p-~~~ 515 (701)
...+..+..+.....+++ .....+.+..-.|......+|...+.. ..+|+-++..++-..+.... ..+ ++.
T Consensus 302 Aavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~ 380 (1088)
T KOG4318|consen 302 AAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVD 380 (1088)
T ss_pred HHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHH
Confidence 112222222211111111 111112222222333333334333222 22455555555555443211 111 122
Q ss_pred HHHHHHHHHHhc----------------------CCHHHHHHHHHHHH------------hC----CCCC-------CHH
Q 037695 516 TYTTIIDALSKN----------------------GRVEEATELMMKML------------SK----GLVP-------TVV 550 (701)
Q Consensus 516 ~~~~li~~~~~~----------------------g~~~~A~~~~~~m~------------~~----~~~p-------~~~ 550 (701)
.|..++.-|.+. ....+..++..... .. ...| -..
T Consensus 381 a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ird 460 (1088)
T KOG4318|consen 381 AFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRD 460 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHH
Confidence 333333322221 11111111111110 00 0000 001
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHH
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTA--SKADASTCHVLVESYL 628 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~ 628 (701)
.-+.++..|+..-+..+++..-++... ..-...|..|+..++...+.+.|..+.++..... ...|..-+..+.+.+.
T Consensus 461 i~~ql~l~l~se~n~lK~l~~~ekye~-~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~ 539 (1088)
T KOG4318|consen 461 IANQLHLTLNSEYNKLKILCDEEKYED-LLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ 539 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence 122333333333333333332222211 1113456677777777777777777777664332 2334455666777777
Q ss_pred hcCChhhHHHHHHHHHhCCC-CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CchHHHHhh
Q 037695 629 NKGIPLLAYKVACRMFNRNL-IPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQ--PKSEEHLQR 694 (701)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~ 694 (701)
+.+....+..+.+++.+.-. .|+ ..+...+.......|+.+.-.++.+-+...|... |-...||+.
T Consensus 540 r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrk 609 (1088)
T KOG4318|consen 540 RLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRK 609 (1088)
T ss_pred HhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeec
Confidence 77777777777776665211 222 2344455555666777776666666666666533 223444443
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=1.5e-10 Score=109.78 Aligned_cols=290 Identities=17% Similarity=0.154 Sum_probs=141.7
Q ss_pred CcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695 318 GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMI 397 (701)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 397 (701)
|++.+|+++..+-.+.+-.| ...|..-+.+....|+.+.+-.++.+..+..-.++...+-+........|++..|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 55555555555555444332 33344455566666777777777666665432344555555566666666666666666
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695 398 NTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV 477 (701)
Q Consensus 398 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 477 (701)
.++.+.+ +.+.........+|.+.|++.....++..|.+.|.-.+...-..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l---------------------------- 227 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL---------------------------- 227 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------
Confidence 6666554 33455556666666666666666666666666664443321000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695 478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH 557 (701)
Q Consensus 478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 557 (701)
...+|+.++.-....+..+.-...|+..... .+.++..-..++.-+.+.|+.++|.++..+..+++..|+ .. ..-
T Consensus 228 e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~ 302 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLI 302 (400)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHH
Confidence 0122333333333333333333333333221 122233333444444445555555555444444443333 11 111
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 037695 558 RYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLA 636 (701)
Q Consensus 558 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 636 (701)
.+.+.++...-++..++..+..|+ +..+.+|+..|.+.+.+.+|...|+.+++ ..|+..+|+.++.++.+.|++.+|
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHH
Confidence 233444444444445544444444 34444555555555555555555554443 234455555555555555555555
Q ss_pred HHHHHHHH
Q 037695 637 YKVACRMF 644 (701)
Q Consensus 637 ~~~~~~~~ 644 (701)
.++.++.+
T Consensus 381 ~~~r~e~L 388 (400)
T COG3071 381 EQVRREAL 388 (400)
T ss_pred HHHHHHHH
Confidence 55544444
No 56
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.51 E-value=2.1e-10 Score=108.90 Aligned_cols=287 Identities=14% Similarity=0.084 Sum_probs=196.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695 387 NGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKF 466 (701)
Q Consensus 387 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 466 (701)
.|++.+|+++..+..+.+- -....|..-..+-.+.|+.+.+-.++.+..+..-.++....-+........|+++.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 3555555555555444431 222334444445555556666655555555542233444444555555556666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 467 MQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT-------VTYTTIIDALSKNGRVEEATELMMK 539 (701)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~ 539 (701)
...+.+.+ +.++........+|.+.|++.....++..+.+.|.-.+. .+|+.+++-....+..+.-...++.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 66555542 334555566666666666666666666666666544332 3577777766666666665566666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 037695 540 MLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADAST 619 (701)
Q Consensus 540 m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 619 (701)
.-.. .+-++..-.+++.-+.+.|+.++|.++..+.++.+-++. ... .....+-++...-++..++.++.. +-++..
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~-~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L 330 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCR-LIPRLRPGDPEPLIKAAEKWLKQH-PEDPLL 330 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHH-HHhhcCCCCchHHHHHHHHHHHhC-CCChhH
Confidence 5543 455677778888999999999999999999999876655 111 222346678888888888877765 347788
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 620 CHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
+..|+..|.+++.+.+|...++.+.+ ..|+...|..++..+.+.|+..+|.+.+++..-.
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999988 8889999999999999999999999999988743
No 57
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.51 E-value=7.7e-11 Score=121.93 Aligned_cols=477 Identities=15% Similarity=0.139 Sum_probs=286.1
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCC
Q 037695 163 VLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGI 242 (701)
Q Consensus 163 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~ 242 (701)
++..+...|+.|+..||..+|..|+..|+.+.|- +|.-|.....+.+...++.++......++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4556788899999999999999999999999888 9999988777888889999999988888877665
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC-----
Q 037695 243 TPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ----- 317 (701)
Q Consensus 243 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----- 317 (701)
.|...||..|..+|...|++.. .+..++ ....+...+...|.......++..+.-..+..|+.
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~il 147 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAIL 147 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHH
Confidence 6788899999999999998765 222222 01111222222232222222222222212222222
Q ss_pred -----CcHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 037695 318 -----GRIEEAKELVNQMSQMGC-IPDVVTYTAVVNGFCRVG-ELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKS 390 (701)
Q Consensus 318 -----g~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 390 (701)
|.++.+++++..+....- .|..+ .++-+.... .+++-..+.+.... .|++.+|..+++.-...|++
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~ 220 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDV 220 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCch
Confidence 556666666655443211 11111 233333322 34444444444433 58999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 391 LEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQEC 470 (701)
Q Consensus 391 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 470 (701)
+.|..++.+|.+.|++.+..-|-.++-+ .+....+..+++-|...|+.|+..|+...+-.+...|....+..
T Consensus 221 d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e----- 292 (1088)
T KOG4318|consen 221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE----- 292 (1088)
T ss_pred hhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc-----
Confidence 9999999999999998888877777666 78888899999999999999999999887777777554222221
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcC-----CHH-----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 471 LNKGCAVNVVNFTSLIRGFCQKG-----DLE-----EALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKM 540 (701)
Q Consensus 471 ~~~~~~~~~~~~~~ll~~~~~~g-----~~~-----~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (701)
|.+ ...-+++-+..-.-.| .++ -....+.+..-.|+......|...+.. ...|+-++..++-..|
T Consensus 293 ---~sq-~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l 367 (1088)
T KOG4318|consen 293 ---GSQ-LAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQL 367 (1088)
T ss_pred ---ccc-hhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhh
Confidence 222 2222222222222222 111 111222222223444333444444332 2356555555555554
Q ss_pred HhC--CCCC-CHHHHHHHHHHHHhc----------------------CCHHHHHHHHHHHHhc-----------------
Q 037695 541 LSK--GLVP-TVVTYRTVIHRYCQV----------------------GRVEDLLKLLEKMLSK----------------- 578 (701)
Q Consensus 541 ~~~--~~~p-~~~~~~~l~~~~~~~----------------------g~~~~A~~~~~~~~~~----------------- 578 (701)
..- .+.+ +...|..++.-|.+. ....+..+++......
T Consensus 368 ~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~ 447 (1088)
T KOG4318|consen 368 LNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERS 447 (1088)
T ss_pred cCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcc
Confidence 321 1111 222333333332221 1111222222111100
Q ss_pred -CCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC--C
Q 037695 579 -QKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRN--L 648 (701)
Q Consensus 579 -~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~ 648 (701)
.|- ....+.++..+++.-+..++...-++....- =+..|..|+.-+......+.|.....+...+. +
T Consensus 448 he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l---f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~ 524 (1088)
T KOG4318|consen 448 HEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL---FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESI 524 (1088)
T ss_pred cccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhh
Confidence 010 1123345555666555666655544443322 22678889999999999999999988887643 2
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695 649 IPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQP 686 (701)
Q Consensus 649 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 686 (701)
..+...+..+.+.+.+.+...++..+++.+.+.-...|
T Consensus 525 ~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~ 562 (1088)
T KOG4318|consen 525 HLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEP 562 (1088)
T ss_pred hcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCc
Confidence 33557788899999999999999999999988544333
No 58
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=1.6e-10 Score=106.25 Aligned_cols=288 Identities=15% Similarity=0.137 Sum_probs=221.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh------hHHHHHHHHHhcCC
Q 037695 351 RVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAI------TYSVVMHGLRREGK 424 (701)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~g~ 424 (701)
-..+.++|.++|-+|.+.. +-+..+--+|-+.|.+.|..+.|+++.+.+.++ ||.. ....|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 4578899999999999842 224445567888999999999999999998874 5543 23345666888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHH
Q 037695 425 LSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNV----VNFTSLIRGFCQKGDLEEALS 500 (701)
Q Consensus 425 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~ 500 (701)
++.|..+|..+.+.+ ..-......|+..|-...+|++|+.+-+++.+.+..+.. ..|.-|...+....+++.|..
T Consensus 123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 999999999998865 345567888999999999999999999988887654432 335556666777889999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037695 501 LLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK 580 (701)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 580 (701)
++.+..+.. +..+..-..+.+.+...|+++.|++.++...+++..--+.+...|..+|.+.|+.++...++.++.+..+
T Consensus 202 ~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 999998754 2334445567788899999999999999999986555577888899999999999999999999999887
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChhhHHHHHHHHHhC
Q 037695 581 CRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNK---GIPLLAYKVACRMFNR 646 (701)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 646 (701)
.......+........-.+.|...+.+-++. +|+...+..|+..-... |...+.+..+..|+..
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 7766666666665555566777666665553 68888888888765544 4456666777777663
No 59
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.51 E-value=5.3e-09 Score=97.31 Aligned_cols=441 Identities=12% Similarity=0.113 Sum_probs=236.8
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 037695 118 QADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMY 197 (701)
Q Consensus 118 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 197 (701)
.+|+.-|+.+.+...... -.....+---+..++.+.|++++|...+..+.... .++...+..|.-++.-.|.+.+|..
T Consensus 35 ~rDytGAislLefk~~~~-~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNLD-REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred cccchhHHHHHHHhhccc-hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 356777777776543211 11112233446777888899999999888777643 4667777777777777888888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH-HccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCC
Q 037695 198 VLSMMQKAAVAPNLLICNTAIHVL-VVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKG 276 (701)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 276 (701)
+-.+. |+....+.|+-.+ -+.++-++...+.+.+... ..---+|.......-.+.+|++++......
T Consensus 113 ~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d- 180 (557)
T KOG3785|consen 113 IAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD- 180 (557)
T ss_pred HHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 76663 4444455444444 4667766666666555432 123334445555555778899998888765
Q ss_pred CCCCHHHHHHHH-HHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 037695 277 CSPDKVSYYTVM-GYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGEL 355 (701)
Q Consensus 277 ~~pd~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 355 (701)
.|+-...|.-+ -+|.+..-++.+.+++...++ .++-+....|..+....+.-.-
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~------------------------q~pdStiA~NLkacn~fRl~ng 235 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR------------------------QFPDSTIAKNLKACNLFRLING 235 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH------------------------hCCCcHHHHHHHHHHHhhhhcc
Confidence 45555555544 344566666666666665544 1222333444433333332222
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037695 356 DQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHN-----GKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACD 430 (701)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 430 (701)
..|.+-.+.+.+.+-.. | ..+.-+++. ..-+.|++++--+.+. -| .....++--|.+.+++.+|..
T Consensus 236 r~ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~ 306 (557)
T KOG3785|consen 236 RTAEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAIS 306 (557)
T ss_pred chhHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHH
Confidence 23333344444332111 1 111222222 2335566655544432 12 122334455677777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHH
Q 037695 431 VVREMVKKGFFPTPVEINLLIQSLCREG-------KMDGAKKFMQECLNKGCAVNVVN-FTSLIRGFCQKGDLEEALSLL 502 (701)
Q Consensus 431 ~~~~m~~~~~~~~~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~A~~~~ 502 (701)
+.+++. +.++.-|-.-.-.++..| .+.-|...|+..-.++..-|... -.++..++.-..++++.+-.+
T Consensus 307 L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~Yl 382 (557)
T KOG3785|consen 307 LCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYL 382 (557)
T ss_pred HHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 666542 222222221111222222 24455555655544443333222 233444555556677777777
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037695 503 DDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYR-TVIHRYCQVGRVEDLLKLLEKMLSKQKC 581 (701)
Q Consensus 503 ~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 581 (701)
+.+...-...|...|| +.++++..|++.+|.++|-+.....++ |..+|. .|.++|.+.++...|..++-++-.....
T Consensus 383 nSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~ 460 (557)
T KOG3785|consen 383 NSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSER 460 (557)
T ss_pred HHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhH
Confidence 7666543333444433 566777777777777777666544333 334443 4456677777777776665444321111
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTA 612 (701)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (701)
...+..++..|.+++.+=-|-+.|+.+....
T Consensus 461 fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 461 FSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 3344455666667777766667777665543
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.49 E-value=3.3e-09 Score=108.86 Aligned_cols=445 Identities=14% Similarity=0.067 Sum_probs=243.6
Q ss_pred CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHH
Q 037695 206 AVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYY 285 (701)
Q Consensus 206 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~ 285 (701)
.+..+...|..|.-++.++|+++.+.+.|++.... ..-....|+.+...|...|.-..|..+++.-....-.|+..+-.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34568888888999999999999999999998754 23456678888889999999999999998876553335444333
Q ss_pred HHH-HHHHH-cCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc-----------
Q 037695 286 TVM-GYLCK-EKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRV----------- 352 (701)
Q Consensus 286 ~ll-~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~----------- 352 (701)
.++ ..|.+ -+.++++.+.-.++.. .+..... .+ ....|..+.-+|...
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~----------------~~~~~~~-~l--~~~~~l~lGi~y~~~A~~a~~~seR~ 457 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAIS----------------LLGGQRS-HL--KPRGYLFLGIAYGFQARQANLKSERD 457 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHH----------------Hhhhhhh-hh--hhhHHHHHHHHHHhHhhcCCChHHHH
Confidence 333 33433 4555555555444433 1111111 11 222333333333321
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 037695 353 GELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVV 432 (701)
Q Consensus 353 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 432 (701)
....++++.+++..+.+.. |+...-.+.--|+..++++.|.....+..+.+-..+...|..+.-.+...+++.+|+.+.
T Consensus 458 ~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vv 536 (799)
T KOG4162|consen 458 ALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVV 536 (799)
T ss_pred HHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 1245778888888765422 333333344456677888899998888888766678888888888888888999998888
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC
Q 037695 433 REMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLC--KK 510 (701)
Q Consensus 433 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~ 510 (701)
+.....- ..|......-+..-..-++.+++......++.. |... ....+.++-....++...+.-. ..
T Consensus 537 d~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~l~la~~q~ 606 (799)
T KOG4162|consen 537 DAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAGLHLALSQP 606 (799)
T ss_pred HHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhcccccCcccc
Confidence 8765531 112222222222223356666666555544432 0000 0001111112222222222110 00
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-
Q 037695 511 DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVP--T------VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC- 581 (701)
Q Consensus 511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 581 (701)
.-...++..+..-....+ ..+..-.. |....+.| + ...|......+.+.++.++|...+.++....|.
T Consensus 607 ~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~ 683 (799)
T KOG4162|consen 607 TDAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS 683 (799)
T ss_pred cccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh
Confidence 111122222221111100 00000000 11111111 1 223444455566666666666666666665554
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH--HHHHHHhCCCCCCHhhHHHHH
Q 037695 582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYK--VACRMFNRNLIPDLKLCKKVS 659 (701)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~p~~~~~~~l~ 659 (701)
...|...+..+...|..++|.+.|..++..++. ++....+++..+.+.|+...|.. ++..+++.++. +...|..++
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG 761 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLG 761 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 455555566666666667777666666665433 45556666666666666666655 66666663333 446666677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695 660 ERLILEGKSEEADTLMLRFVERGHIQP 686 (701)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 686 (701)
..+.+.|+.++|.+.|..+.+.....|
T Consensus 762 ~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 762 EVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHHHccchHHHHHHHHHHHhhccCCC
Confidence 777777777777777766666654433
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.47 E-value=1.3e-08 Score=104.68 Aligned_cols=410 Identities=13% Similarity=0.019 Sum_probs=235.7
Q ss_pred CCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHH
Q 037695 242 ITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIE 321 (701)
Q Consensus 242 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~ 321 (701)
+..+...|..|.-+....|+++.+.+.|++.... +.-....|+.+...+...|....|..+++.-..
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~------------ 385 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLK------------ 385 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcc------------
Confidence 4556777777777788888888888888877643 233556677777777777776666666655433
Q ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHhc---------
Q 037695 322 EAKELVNQMSQMGCIPDVVTYTAVVNGFC-RVGELDQAKKMLQQMYHH--GC--KPNTVSYTAFLNGLCHN--------- 387 (701)
Q Consensus 322 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~~~~~--------- 387 (701)
...-+++...+...-..|. +.+.+++++.+-.++... +. ......|..+.-+|...
T Consensus 386 ----------~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~se 455 (799)
T KOG4162|consen 386 ----------KSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSE 455 (799)
T ss_pred ----------cccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHH
Confidence 0001223334433334443 345666666666665541 11 11222333333333211
Q ss_pred --CCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695 388 --GKSLEAREMINTSEEEWW-TPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAK 464 (701)
Q Consensus 388 --g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 464 (701)
....++.+.+++..+.+. .|++..| +.--|+..++++.|....++..+.+-..+...|..+.-.+...+++..|+
T Consensus 456 R~~~h~kslqale~av~~d~~dp~~if~--lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 456 RDALHKKSLQALEEAVQFDPTDPLVIFY--LALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCchHHHH--HHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence 112345555666554331 2222222 33345566677777777777777655666677777777777777777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-
Q 037695 465 KFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK- 543 (701)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 543 (701)
.+.+..... .+.|......-++.-..-++.++|+.+...+... .-+.. .....++-....+....+.-.
T Consensus 534 ~vvd~al~E-~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~-------~~q~~~~~g~~~~lk~~l~la~ 603 (799)
T KOG4162|consen 534 DVVDAALEE-FGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEY-------GVQQTLDEGKLLRLKAGLHLAL 603 (799)
T ss_pred HHHHHHHHH-hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhh-------hHhhhhhhhhhhhhhcccccCc
Confidence 777766553 1222222222233333456666666666555431 00000 000111111222222222111
Q ss_pred -CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCC------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 544 -GLVPTVVTYRTVIHRYCQVG---RVEDLLKLLEKMLS-KQKC------RTAYNQVIENLCSFGYLEEAGKILGKVLRTA 612 (701)
Q Consensus 544 -~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (701)
...-...++..+.......+ ..+.. +..... .+|+ ...|...+..+.+.+..++|...+.++....
T Consensus 604 ~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~ 680 (799)
T KOG4162|consen 604 SQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID 680 (799)
T ss_pred ccccccchhhHHHHHHHHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc
Confidence 11112344444433332111 11111 111111 1232 1345566777888899999998888887654
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCchH
Q 037695 613 SKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSERLILEGKSEEADT--LMLRFVERGHIQPKSE 689 (701)
Q Consensus 613 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~ 689 (701)
+.....|...+..+...|...+|.+.|..++. +.|+. .+...++.++.+.|+..-|.. ++..+.+.+|..|..=
T Consensus 681 -~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW 757 (799)
T KOG4162|consen 681 -PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAW 757 (799)
T ss_pred -hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHH
Confidence 55788888999999999999999999999998 77765 889999999999998888887 9999999998777654
Q ss_pred HHH
Q 037695 690 EHL 692 (701)
Q Consensus 690 ~~l 692 (701)
+.|
T Consensus 758 ~~L 760 (799)
T KOG4162|consen 758 YYL 760 (799)
T ss_pred HHH
Confidence 443
No 62
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.46 E-value=2.8e-08 Score=100.23 Aligned_cols=464 Identities=13% Similarity=0.070 Sum_probs=266.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 037695 179 FSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCD 258 (701)
Q Consensus 179 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 258 (701)
|..++..| ..+++...+++.+.+.+. .+-...+.....-.+...|+-++|....+.-.+.. ..+.+.|..+.-.+..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 44444444 445666666666666542 12233333333334445566777776666665543 3355667777666666
Q ss_pred cCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcC
Q 037695 259 LHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPD 338 (701)
Q Consensus 259 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 338 (701)
..++++|++.|......+ +-|...+.-+.-.-++.++++.....-..+.+ . .+..
T Consensus 88 dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq-----------------------l-~~~~ 142 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ-----------------------L-RPSQ 142 (700)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH-----------------------h-hhhh
Confidence 677777777777776553 22444555444444444444444433333322 1 1123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 037695 339 VVTYTAVVNGFCRVGELDQAKKMLQQMYHHG-CKPNTVSYTAFL------NGLCHNGKSLEAREMINTSEEEWWTPNAIT 411 (701)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 411 (701)
...|..++.++.-.|+...|..+++...... -.|+...|.... ......|..+.|.+.+...... ..|-..
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla 220 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLA 220 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHH
Confidence 4566777777777888888888888777643 245555553322 2344567777777776655432 122222
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHH
Q 037695 412 -YSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQS-LCREGKMDGAK-KFMQECLNKGCAVNVVNFTSLIRG 488 (701)
Q Consensus 412 -~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~-~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~ 488 (701)
-.+-...+.+.+++++|..++..++.. .||...|...... +.+..+.-++. .+|....+. .|....-.-+-..
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlpls 296 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLS 296 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHH
Confidence 233455677888888888888888877 4565555444443 33333333333 555555443 1111110001111
Q ss_pred HHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCC----------CCCCHHH--
Q 037695 489 FCQKGDL-EEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKML----SKG----------LVPTVVT-- 551 (701)
Q Consensus 489 ~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~----------~~p~~~~-- 551 (701)
.....++ +..-+++..+.+.|+++-.. .+...|-.....+-..++.-.+. ..| -+|....
T Consensus 297 vl~~eel~~~vdkyL~~~l~Kg~p~vf~---dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 297 VLNGEELKEIVDKYLRPLLSKGVPSVFK---DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred HhCcchhHHHHHHHHHHHhhcCCCchhh---hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH
Confidence 1111222 23334555666666554322 23222222121111111111111 111 1455444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695 552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNK 630 (701)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 630 (701)
+..++..+-+.|+++.|..+++.++...|+ +..|..-++++..+|.+++|..+++++.+.+ .+|...-...+.-..+.
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrA 452 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRA 452 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHc
Confidence 445677788999999999999999998888 7788888999999999999999999998876 55777666777778889
Q ss_pred CChhhHHHHHHHHHhCCCC--CCH----hhHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 631 GIPLLAYKVACRMFNRNLI--PDL----KLCK--KVSERLILEGKSEEADTLMLRFVE 680 (701)
Q Consensus 631 g~~~~A~~~~~~~~~~~~~--p~~----~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 680 (701)
.+.++|.++...+.+.|.. .+. -+|- .-+.+|.+.|++-.|++-|..+-+
T Consensus 453 n~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 453 NEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred cccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999988886641 111 1111 225677888888888766655433
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.44 E-value=3.2e-08 Score=99.82 Aligned_cols=459 Identities=14% Similarity=0.106 Sum_probs=279.9
Q ss_pred HHHHhc--CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 037695 112 CAVLRS--QADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRA 189 (701)
Q Consensus 112 ~~~l~~--~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 189 (701)
-+++++ .+.+...+.+...+.. +++....+.....-.+...|+-++|....+.-.+.. ..+.+.|+.+.-.+...
T Consensus 12 ~~~lk~yE~kQYkkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 12 RRALKCYETKQYKKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhh
Confidence 344443 4778888888887766 446666677777777888899999999988877654 34778899888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHH
Q 037695 190 GKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLI 269 (701)
Q Consensus 190 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 269 (701)
.++++|+++|..+.+.+ +.|...+.-+.-.-++.|+++.....-..+.+.. +.....|..++.++.-.|+...|..++
T Consensus 89 K~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876 6777888877777778888888887777777652 345667888888999999999999999
Q ss_pred HHchhCC-CCCCHHHHHHHHHHH------HHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHH
Q 037695 270 DEMPLKG-CSPDKVSYYTVMGYL------CKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTY 342 (701)
Q Consensus 270 ~~m~~~g-~~pd~~~~~~ll~~~------~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 342 (701)
++..+.. -.|+...|......+ .+.|..+.|.+.+... ... +.-....-
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~-----------------------e~~-i~Dkla~~ 222 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN-----------------------EKQ-IVDKLAFE 222 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh-----------------------hhH-HHHHHHHh
Confidence 9988653 346666665544333 3444444444433332 211 11112222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHH-HHHHHHHhCCCCCChhhHHHHHHHHH
Q 037695 343 TAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLC-HNGKSLEAR-EMINTSEEEWWTPNAITYSVVMHGLR 420 (701)
Q Consensus 343 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~ll~~~~ 420 (701)
.+-...+.+.+++++|..++..++.. .||...|...+..+. +-.+.-++. .+|....+.- +.....-..=+....
T Consensus 223 e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y-~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 223 ETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY-PRHECPRRLPLSVLN 299 (700)
T ss_pred hhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC-cccccchhccHHHhC
Confidence 34456677888899999999888876 466666655544333 344444444 5555554431 111111111111111
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--C------------CCCCHHHHHH--
Q 037695 421 REGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK--G------------CAVNVVNFTS-- 484 (701)
Q Consensus 421 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~------------~~~~~~~~~~-- 484 (701)
...-.+..-.++..+.+.|+++-- ..+...|-.....+-..++...+... | -+|+...|+.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~vf---~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~ 376 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPSVF---KDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYF 376 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCchh---hhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHH
Confidence 122223344555666677765432 22222222211111111111111110 1 1555555554
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037695 485 LIRGFCQKGDLEEALSLLDDMYLCKKDPDT-VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG 563 (701)
Q Consensus 485 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 563 (701)
++..|-..|+++.|...++....+ .|+. ..|..=.+.+...|.+++|..++++..+.. .||...-..-+.-..+.+
T Consensus 377 laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn 453 (700)
T KOG1156|consen 377 LAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRAN 453 (700)
T ss_pred HHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcc
Confidence 456677788888888888887653 4553 345555567777888888888888887764 455544445566666778
Q ss_pred CHHHHHHHHHHHHhcCCCh--------hHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 037695 564 RVEDLLKLLEKMLSKQKCR--------TAYNQV--IENLCSFGYLEEAGKILGKV 608 (701)
Q Consensus 564 ~~~~A~~~~~~~~~~~p~~--------~~~~~l--~~~~~~~g~~~~A~~~~~~~ 608 (701)
+.++|.++.......+-+. -+|..+ +.+|.+.|++..|.+=|..+
T Consensus 454 ~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 454 EIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred ccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 8888888777776554221 122222 45666676666665554443
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=3.4e-09 Score=100.68 Aligned_cols=293 Identities=16% Similarity=0.089 Sum_probs=209.1
Q ss_pred HhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh-HHHHHHHHHhcCCHHH
Q 037695 350 CRVGELDQAKKMLQQMYHH-GCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAIT-YSVVMHGLRREGKLSE 427 (701)
Q Consensus 350 ~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~ 427 (701)
+-.++...+...+-.+... -++-|......+...+...|+..+|...|++.... .|...+ .....-.+.+.|+.+.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhh
Confidence 3345555555555444433 24456777888889999999999999999887754 343332 2223334567788888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695 428 ACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYL 507 (701)
Q Consensus 428 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 507 (701)
...+...+.... .-+...|-.-.......+++..|..+-++.++.. +.++..|-.-...+...|++++|.-.|+....
T Consensus 285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQM 362 (564)
T ss_pred HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence 777777766542 2233334444445566788888888888887763 23455555555677888999999999988876
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhcCCC-hhH
Q 037695 508 CKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVI-HRYC-QVGRVEDLLKLLEKMLSKQKC-RTA 584 (701)
Q Consensus 508 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~p~-~~~ 584 (701)
.. +-+...|..|+.+|...|++.+|.-+-+..... ++.+..++..+. ..|. ...--++|.+++++.+...|. ..+
T Consensus 363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence 32 346788999999999999999988877766554 345666666553 3332 233457899999999988888 778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695 585 YNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL 652 (701)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 652 (701)
.+.++..+...|+.+.++.++++.+.. .||....+.|+..+...+.+++|++.|..++. +.|+.
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--~dP~~ 504 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR--QDPKS 504 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCccc
Confidence 888888888999999999999988764 67888888899999999999999999998888 56654
No 65
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.43 E-value=9.3e-09 Score=95.75 Aligned_cols=452 Identities=11% Similarity=0.047 Sum_probs=274.5
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 037695 148 LEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKL 227 (701)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 227 (701)
+.-+...+++..|..+++.-...+-+-...+-.-+..++.+.|++++|...|..+.... .++...+..|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 56666778899999988876654433222333345556678899999999998887654 56666676676666677888
Q ss_pred hHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 037695 228 AKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKM 307 (701)
Q Consensus 228 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~ 307 (701)
.+|..+-.... .++..-..|.+.-.+.++-++-..+-..+... ...--+|.......-.+.+|.
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAI------ 171 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAI------ 171 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHH------
Confidence 88887765432 33444555666666777766666555554322 122222333333333444444
Q ss_pred HhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 308 VNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAV-VNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCH 386 (701)
Q Consensus 308 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 386 (701)
+++..+... .|.-...|.. .-+|.+..-++-+.++++-.+.. ++-++...|.......+
T Consensus 172 -----------------dvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fR 231 (557)
T KOG3785|consen 172 -----------------DVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFR 231 (557)
T ss_pred -----------------HHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhh
Confidence 444444443 3444444443 34567888888888888887765 23344455554444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037695 387 NGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRRE-----GKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMD 461 (701)
Q Consensus 387 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 461 (701)
.=.-..|..-...+...+-. . | ..+.-+++. ..-+.|++++-.+.+. .| ..-..|+-.|.+.+++.
T Consensus 232 l~ngr~ae~E~k~ladN~~~-~---~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVq 302 (557)
T KOG3785|consen 232 LINGRTAEDEKKELADNIDQ-E---Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQ 302 (557)
T ss_pred hhccchhHHHHHHHHhcccc-c---c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHH
Confidence 32333344444444443211 1 1 123333443 2446788887776654 22 33445666788999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 037695 462 GAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG-------DLEEALSLLDDMYLCKKDPDT-VTYTTIIDALSKNGRVEEA 533 (701)
Q Consensus 462 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-------~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A 533 (701)
+|..+.+.+.- .++.-|-.-.-.+...| .+.-|.+.|+-.-.++..-|. .--..+..++.-..+++++
T Consensus 303 eA~~L~Kdl~P----ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddV 378 (557)
T KOG3785|consen 303 EAISLCKDLDP----TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDV 378 (557)
T ss_pred HHHHHHhhcCC----CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHH
Confidence 99988776532 12222222112222333 355566777666555544332 2345566777778889999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChhHH-HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 534 TELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK-CRTAY-NQVIENLCSFGYLEEAGKILGKVLRT 611 (701)
Q Consensus 534 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 611 (701)
+-+++.+...-...|...+ .+..+++..|++.+|.++|-++..... +..+| ..|+++|.+.++.+.|..++-++
T Consensus 379 l~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--- 454 (557)
T KOG3785|consen 379 LTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--- 454 (557)
T ss_pred HHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc---
Confidence 9999998876444444444 478899999999999999977754331 23344 45788999999999998887664
Q ss_pred CCCCCHHHHHHH-HHHHHhcCChhhHHHHHHHHHhCCCCCCHhhH
Q 037695 612 ASKADASTCHVL-VESYLNKGIPLLAYKVACRMFNRNLIPDLKLC 655 (701)
Q Consensus 612 ~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 655 (701)
+.+.+....-.+ +.-|.+.+.+--|-+.|..+.. ..|++..|
T Consensus 455 ~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 455 NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCcccc
Confidence 334455554444 4568899998888888888877 44554433
No 66
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=2.2e-10 Score=109.69 Aligned_cols=199 Identities=17% Similarity=0.108 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037695 479 VVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHR 558 (701)
Q Consensus 479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 558 (701)
...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455666667777777777777777766542 2345566667777777777777777777777653 4455666667777
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC--C-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 037695 559 YCQVGRVEDLLKLLEKMLSKQK--C-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLL 635 (701)
Q Consensus 559 ~~~~g~~~~A~~~~~~~~~~~p--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 635 (701)
+...|++++|.+.++++....+ . ...+..++.++...|++++|...+.++++..+. +...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 7777778888777777775432 1 345666777777888888888888887775433 55667777778888888888
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 636 AYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 636 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
|...++++.... .++...+..++..+...|+.++|..+.+.+.+.
T Consensus 188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 888888877741 223455556677777788888888877766554
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.40 E-value=3.9e-11 Score=110.08 Aligned_cols=239 Identities=15% Similarity=0.022 Sum_probs=192.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHH
Q 037695 447 INLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTY-TTIIDALS 525 (701)
Q Consensus 447 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~~~~ 525 (701)
-+.+..+|.+.|.+.+|.+.++..++. .|.+.||-.|-+.|.+..++..|+.+|.+-.+. .|-.+|| .-+...+.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 366778888999999999999888776 566778888888999999999999999888774 4555554 45667788
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 037695 526 KNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKI 604 (701)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 604 (701)
..++.++|.++|+...+.. +.+.+...++...|.-.++.+-|+.+|+++++.+.. +..+..++-+|.-.+.++-++.-
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHH
Confidence 8889999999999888864 567777778888888889999999999999988765 78888888888889999999999
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 605 LGKVLRTASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 605 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
|++++.....|+ ..+|..+.......|++..|...|+-++..+.. +...++.++-.-.+.|+.++|..++..+....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 998887755444 467888888888899999999999888874433 44788888888888999999999999988887
Q ss_pred CCCCchHHH
Q 037695 683 HIQPKSEEH 691 (701)
Q Consensus 683 ~~~~~~~~~ 691 (701)
|.-.+...+
T Consensus 460 P~m~E~~~N 468 (478)
T KOG1129|consen 460 PDMAEVTTN 468 (478)
T ss_pred ccccccccc
Confidence 754444433
No 68
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.39 E-value=1.9e-09 Score=111.75 Aligned_cols=130 Identities=17% Similarity=0.128 Sum_probs=107.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN 629 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 629 (701)
++..+...|...|++++|++++++++...|+ +..|..-++.|-..|++.+|...++.+...... |...-+-.+..+++
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHH
Confidence 4566677888999999999999999999998 788889999999999999999999999887744 88888888889999
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHh--------hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 630 KGIPLLAYKVACRMFNRNLIPDLK--------LCKKVSERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 630 ~g~~~~A~~~~~~~~~~~~~p~~~--------~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
.|+.++|.+++..+.+.+..|-.. .....+.+|.+.|++..|++.|..+.+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999888866544321 1235577889999999999888777654
No 69
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=5.8e-11 Score=108.94 Aligned_cols=230 Identities=13% Similarity=0.066 Sum_probs=166.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 377 YTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCR 456 (701)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 456 (701)
-+.+..+|.+.|.+.+|.+.|+...+. .|.+.||..|-..|.+..++..|+.++.+-++. ++.+.....-+.+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 366778888888888888888887776 467777888888888888888888888877766 23444444556667777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695 457 EGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATEL 536 (701)
Q Consensus 457 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 536 (701)
.++.+.|.++|+...+. .+.++....++...|...++++.|+..|+++.+.|+ .+...|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 77888888888877765 344666666666777777788888888888877774 3666777777777777778877777
Q ss_pred HHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 537 MMKMLSKGLVPT--VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRT 611 (701)
Q Consensus 537 ~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 611 (701)
|.+....--.|+ ...|..+.......|++..|.+.|+-++..+++ ..+++.|+-.-.+.|++++|..++..+...
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 777766533333 344666666666777777777777777777766 567777777777777777777777776554
No 70
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=4.8e-10 Score=107.29 Aligned_cols=199 Identities=14% Similarity=0.111 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037695 444 PVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDA 523 (701)
Q Consensus 444 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 523 (701)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4456666677777777777777777776652 3356666777777888888888888888777643 3345667777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHH
Q 037695 524 LSKNGRVEEATELMMKMLSKGL-VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEA 601 (701)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 601 (701)
+...|++++|...+++...... +.....+..+...+...|++++|...+.++....|. ...+..++..+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888876422 223456667778888889999999999888888776 56777888888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 602 GKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
...++++++.. +.++..+..++..+...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99998888763 44667777778888888998888888777665
No 71
>PRK12370 invasion protein regulator; Provisional
Probab=99.37 E-value=2.9e-10 Score=122.30 Aligned_cols=251 Identities=13% Similarity=0.028 Sum_probs=187.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695 423 GKLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE---------GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG 493 (701)
Q Consensus 423 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 493 (701)
+..++|...|++.++.. +-+...+..+..++... +++++|...++++.+.. +.+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 45789999999998874 33556676666655422 34789999999998873 447788888888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 494 DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLE 573 (701)
Q Consensus 494 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 573 (701)
++++|...|++..+.+ +.+...+..+..+|...|++++|...+++..+.. +.+...+..++..+...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999998854 3346678888999999999999999999999864 2233344445555677899999999999
Q ss_pred HHHhcC-CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCC
Q 037695 574 KMLSKQ-KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRN-LIP 650 (701)
Q Consensus 574 ~~~~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p 650 (701)
++.... |. +..+..++.+|...|++++|...+.++.... +.+....+.+...|+..|+ .|...++++.+.. ..|
T Consensus 431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRID 507 (553)
T ss_pred HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhh
Confidence 988764 54 5567888999999999999999999876543 2244556667777888884 7888787776622 222
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 651 DLKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 651 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
.... .....+.-.|+.+.+.-+ +++.+.+.
T Consensus 508 ~~~~--~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 508 NNPG--LLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cCch--HHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 2222 244566678888877777 88887764
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.36 E-value=5.8e-10 Score=119.97 Aligned_cols=248 Identities=13% Similarity=0.073 Sum_probs=180.9
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695 388 GKSLEAREMINTSEEEWWTPNAITYSVVMHGLRR---------EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREG 458 (701)
Q Consensus 388 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 458 (701)
+.+++|...|++..+.. +.+...|..+..++.. .+++++|...+++.++.. +.+...+..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 34678999999998753 2344556666555542 234789999999998875 557778888888889999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHH
Q 037695 459 KMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT-VTYTTIIDALSKNGRVEEATELM 537 (701)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~ 537 (701)
++++|...|+++.+.+ |.+...+..+...+...|++++|+..+++..+. .|+. ..+..++..+...|++++|...+
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999998874 446777888889999999999999999999885 4443 23334455566789999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC
Q 037695 538 MKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS-KA 615 (701)
Q Consensus 538 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 615 (701)
+++....-+-++..+..+..++...|++++|...+.++....|. ....+.+...|+..| ++|...++++++... .+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 99887642234556777888888999999999999998877776 455666777777777 477777777665421 22
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 616 DASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
....+ +...|.-.|+.+.+... +++.+
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhc
Confidence 22222 34456666777666655 66666
No 73
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.36 E-value=3.9e-10 Score=115.21 Aligned_cols=237 Identities=18% Similarity=0.208 Sum_probs=177.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC
Q 037695 443 TPVEINLLIQSLCREGKMDGAKKFMQECLNK-----GC-AVNV-VNFTSLIRGFCQKGDLEEALSLLDDMYL-----CKK 510 (701)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~ 510 (701)
-..+...+...|...|+++.|+.+++..++. |. .|.+ ...+.+...|...+++.+|..+|+++.. .|-
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456667888899999999999988887664 21 1222 2334467788999999999999998874 221
Q ss_pred -CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Q 037695 511 -DPD-TVTYTTIIDALSKNGRVEEATELMMKMLSK-----GLV-PT-VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ-- 579 (701)
Q Consensus 511 -~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~-p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-- 579 (701)
.|. ..+++.|..+|.+.|++++|..++++..+. |.. |. ...++.++..|+..+++++|..++++..+..
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 122 346778888999999999998888877642 211 22 2236667788899999999999999877652
Q ss_pred ------CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C---CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 580 ------KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTA----S---KADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 580 ------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+. ..+++.|+..|...|++++|.+++++++... . .-....++.|+..|...+.+.+|.++|.+...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12 4578999999999999999999999987653 1 12245678889999999999999988887655
Q ss_pred ----CCC-CCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 646 ----RNL-IPDL-KLCKKVSERLILEGKSEEADTLMLRFV 679 (701)
Q Consensus 646 ----~~~-~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (701)
.|+ .|+. .+|..|+..|-..|++++|+++.+++.
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 222 2343 889999999999999999999998886
No 74
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=4.6e-08 Score=93.21 Aligned_cols=317 Identities=13% Similarity=0.084 Sum_probs=229.7
Q ss_pred CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 037695 370 CKPNTVSYTAFLNGL--CHNGKSLEAREMINTSEE-EWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVE 446 (701)
Q Consensus 370 ~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 446 (701)
+.|+..+...-+.++ +..++...|...+-.+.. ..++.|+.....+...+...|+.++|...|++....+ +-+...
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhh
Confidence 344433444444443 334555555554444333 2356788888999999999999999999999887653 222233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037695 447 INLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK 526 (701)
Q Consensus 447 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 526 (701)
.....-.+...|+++....+...+.... .-+...|-.-+.......++..|+.+-++.++.. +.+...|-.-...+..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence 3333444567888888888877776542 2233344444445556788999999999887743 3345556555677889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHH-HHHH-hcCCHHHHHH
Q 037695 527 NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVI-ENLC-SFGYLEEAGK 603 (701)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~-~~~~-~~g~~~~A~~ 603 (701)
.|++++|.-.|+...... |-+..+|.-|++.|...|.+.+|.-.-+.....-|. ..++.-++ ..+. .-.--++|.+
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHH
Confidence 999999999999988753 557899999999999999999999888877666554 55555553 3332 3344689999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 604 ILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
++++.++..+.. ....+.++..+...|....++.++++.+. ..||......+++.+...+.+++|.+.|..++..+|
T Consensus 426 f~ek~L~~~P~Y-~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 426 FAEKSLKINPIY-TPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHhhhccCCcc-HHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 999998765332 34456778889999999999999999999 888999999999999999999999999999999998
Q ss_pred CCCchHHHHh
Q 037695 684 IQPKSEEHLQ 693 (701)
Q Consensus 684 ~~~~~~~~l~ 693 (701)
+..-...-++
T Consensus 503 ~~~~sl~Gl~ 512 (564)
T KOG1174|consen 503 KSKRTLRGLR 512 (564)
T ss_pred cchHHHHHHH
Confidence 6655544443
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=3.3e-07 Score=91.69 Aligned_cols=121 Identities=17% Similarity=0.134 Sum_probs=65.2
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH--HHHHH
Q 037695 144 YYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNT--AIHVL 221 (701)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--ll~~~ 221 (701)
..+=++.+...+++++|.+....+...+ +-+...+..-+.++.+.+++++|+.+.+.-.. ..+++. +=.+|
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAY 87 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAY 87 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHH
Confidence 3344555666667777777766666554 44555566666666666777776644443211 011111 23333
Q ss_pred H--ccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhC
Q 037695 222 V--VGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLK 275 (701)
Q Consensus 222 ~--~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 275 (701)
| +.+..++|+..++-.. +.+..+...-...+.+.|++++|+.+|+.+.+.
T Consensus 88 c~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred HHHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3 5666666666666221 112224444445566666666666666666554
No 76
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=6.7e-10 Score=97.66 Aligned_cols=206 Identities=15% Similarity=0.041 Sum_probs=149.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037695 481 NFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYC 560 (701)
Q Consensus 481 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 560 (701)
+...|.-.|...|++..|..-+++.++.. +.+..+|..+...|.+.|..+.|.+-|++.++.. +-+....|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 45556677888888888888888887743 3345677777788888888888888888887753 445666777777778
Q ss_pred hcCCHHHHHHHHHHHHhcC--CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 037695 561 QVGRVEDLLKLLEKMLSKQ--KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAY 637 (701)
Q Consensus 561 ~~g~~~~A~~~~~~~~~~~--p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 637 (701)
..|++++|...|++++... +. ..++..++.+-.+.|+.+.|...|++.++..+. .+.+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 8888888888888877642 22 467777787778888888888888888876643 4555667777788888888888
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHH
Q 037695 638 KVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEE 690 (701)
Q Consensus 638 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 690 (701)
.++++....+. ++.......+++-...|+-+.|.++=..+...-|.++....
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 88887777655 66666666666667778877777777777776665555443
No 77
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=4.3e-07 Score=95.82 Aligned_cols=224 Identities=20% Similarity=0.212 Sum_probs=133.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695 419 LRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEA 498 (701)
Q Consensus 419 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 498 (701)
+...+-+++|+.+|+... .+....+.|+. ..+.++.|.++-+++. .+..|..+..+-.+.|.+.+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 344555666666666532 22333333332 2345555555544332 455677777777777888777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037695 499 LSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK 578 (701)
Q Consensus 499 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 578 (701)
++-|-+. .|+..|.-.++...+.|.+++-.+++....+..-.|... ..|+-+|++.++..+..+++ .
T Consensus 1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-----~ 1190 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-----A 1190 (1666)
T ss_pred HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-----c
Confidence 7766443 355677778888888888888888777766665555544 35677777777777665554 3
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-------------
Q 037695 579 QKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN------------- 645 (701)
Q Consensus 579 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------------- 645 (701)
+|+......+++-|...|.++.|.-+|..+ ..|..|...+...|+++.|.+..+++-.
T Consensus 1191 gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd 1261 (1666)
T KOG0985|consen 1191 GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVD 1261 (1666)
T ss_pred CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhc
Confidence 566555666666666666666666555432 2344455555555555555544433321
Q ss_pred -----------CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 646 -----------RNLIPDLKLCKKVSERLILEGKSEEADTLMLRF 678 (701)
Q Consensus 646 -----------~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (701)
.++....+-...++.-|...|-++|-+.+++..
T Consensus 1262 ~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~ 1305 (1666)
T KOG0985|consen 1262 KEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAG 1305 (1666)
T ss_pred hhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhh
Confidence 122223445556666677777777777777654
No 78
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.9e-06 Score=89.87 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 037695 514 TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLC 593 (701)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~ 593 (701)
+..|..+..+-.+.|.+.+|++-|-+. .|+..|..+++...+.|.+++..+++.-+.++...+.+-..|+.+|+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyA 1177 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYA 1177 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHH
Confidence 345667777777777777776655332 35667777788888888888888777766665444555567777788
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 037695 594 SFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADT 673 (701)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 673 (701)
+.+++.+-..++. .||......++.-|...|.++.|.-+|. +...|..++..+...|.++.|..
T Consensus 1178 kt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1178 KTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHH
Confidence 8777777655542 4666667777777777777777765553 34466778888888888888876
Q ss_pred HHHHH
Q 037695 674 LMLRF 678 (701)
Q Consensus 674 ~~~~~ 678 (701)
.-+++
T Consensus 1242 ~aRKA 1246 (1666)
T KOG0985|consen 1242 AARKA 1246 (1666)
T ss_pred Hhhhc
Confidence 66554
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.26 E-value=6.9e-09 Score=91.38 Aligned_cols=196 Identities=14% Similarity=0.054 Sum_probs=99.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037695 447 INLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK 526 (701)
Q Consensus 447 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 526 (701)
...|.-.|...|+...|..-+++.++. -+.+..+|..+...|.+.|..+.|.+.|++..... +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~-DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEH-DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 334444555555555555555555554 12344455555555555555555555555555432 2233444555555555
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 037695 527 NGRVEEATELMMKMLSKG-LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKI 604 (701)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 604 (701)
.|++++|...|++..... ..--..+|..+.-+..+.|+.+.|...|++.+...|+ +.+...+.....+.|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 555555555555555431 1112334444554555555555555555555555555 44455555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 605 LGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
++.....+. ++...+-..|..-...|+-+.|-.+=.++.+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555544443 4554444445555555555544444444444
No 80
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=4.9e-09 Score=103.11 Aligned_cols=196 Identities=12% Similarity=-0.073 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037695 480 VNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRY 559 (701)
Q Consensus 480 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 559 (701)
..|..+...|...|++++|...|++..+.. +.+...|+.+...|...|++++|...|++.++.. +-+..+|..+..++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 335555555666666666666666665532 2235566666666666666666666666666542 22345555666666
Q ss_pred HhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 037695 560 CQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKV 639 (701)
Q Consensus 560 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 639 (701)
...|++++|++.|++..+..|+..........+...++.++|...+.+..... .++... ....+...|+...+ +.
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~---~~~~~~~lg~~~~~-~~ 217 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG---WNIVEFYLGKISEE-TL 217 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH---HHHHHHHccCCCHH-HH
Confidence 66666666666666666666653321222222334556666666665544322 122111 12223334444333 22
Q ss_pred HHHHHh---CCC--CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 640 ACRMFN---RNL--IPD-LKLCKKVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 640 ~~~~~~---~~~--~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
++.+.+ ..+ .|+ ...|..++..+.+.|++++|+.+|+++++.+
T Consensus 218 ~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 218 MERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 222221 111 111 2456666666666677777777776666655
No 81
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.24 E-value=7.7e-08 Score=89.44 Aligned_cols=331 Identities=14% Similarity=0.114 Sum_probs=210.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHH
Q 037695 338 DVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYS-VVM 416 (701)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll 416 (701)
++.-..-+...+...|++..|+.-|...++.. +-+-.++-.-...|...|+...|+.-+...++. +||-..-. .-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 34444455666666777777777777766531 111222333344566667777777666666654 45543221 122
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037695 417 HGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLE 496 (701)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 496 (701)
..+.+.|.+++|..=|+.+++.. |+..+ ...++.+.-..++- ......+..+...|+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~----------------~~l~~ql~s~~~~GD~~ 172 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEH----------------WVLVQQLKSASGSGDCQ 172 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHH----------------HHHHHHHHHHhcCCchh
Confidence 34566777777777777776663 22111 11111111111111 11222344556678888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 497 EALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKML 576 (701)
Q Consensus 497 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 576 (701)
.|+.....+++-. +-|...|..-..+|...|.+..|+.-+....+.. ..+..++..+...+...|+.+.++...++.+
T Consensus 173 ~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 173 NAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8888888887732 3366677777888888888888888777766653 4456667777788888888888888888888
Q ss_pred hcCCCh----hHHHHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChhhHHHHH
Q 037695 577 SKQKCR----TAYNQV---------IENLCSFGYLEEAGKILGKVLRTASKADASTC---HVLVESYLNKGIPLLAYKVA 640 (701)
Q Consensus 577 ~~~p~~----~~~~~l---------~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~ 640 (701)
+.+|+. +.|..+ +......+++.++....++.++..+......+ ..+-.+|...|++.+|+...
T Consensus 251 KldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 251 KLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred ccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 888872 223222 22334567788888888888877654333333 33445666778888999988
Q ss_pred HHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhhhh
Q 037695 641 CRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQRQR 696 (701)
Q Consensus 641 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 696 (701)
.+.++ +.|+ ..++-.-+.+|+-...+++|+.-|+++.+.+........-+.+..
T Consensus 331 ~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Ak 385 (504)
T KOG0624|consen 331 KEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAK 385 (504)
T ss_pred HHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 88888 6666 688888888999889999999999999888876666666555543
No 82
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=7.6e-08 Score=95.28 Aligned_cols=437 Identities=13% Similarity=0.085 Sum_probs=247.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCC-hHHHHHHHHHHHhcCCh
Q 037695 184 VAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPN-VLTYNCLIKGYCDLHRI 262 (701)
Q Consensus 184 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~g~~ 262 (701)
.+....|+++.|+.+|...+... ++|...|..=..+|+..|++++|++=-.+-.+. .|+ ...|+-...++...|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 34456788888888888888776 557788888888888888888887766665554 343 55788888888888888
Q ss_pred hHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHH
Q 037695 263 KDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTY 342 (701)
Q Consensus 263 ~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 342 (701)
++|+.-|.+-.+.. +.+...++.+..++.- +.+. +. .--++..|
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~----~~~~-----~~--------------------------~~~~p~~~ 130 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLE----DYAA-----DQ--------------------------LFTKPYFH 130 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhH----HHHh-----hh--------------------------hccCcHHH
Confidence 88888888776652 2244555555555411 0000 00 00122222
Q ss_pred HHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhCCCCCChhhH
Q 037695 343 TAVVN-----GFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINT-----SEEEWWTPNAITY 412 (701)
Q Consensus 343 ~~li~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----~~~~~~~~~~~~~ 412 (701)
..+.. .+.....+.. ++..+.. .|. . +..|....++..+...+.. +...+..+....-
T Consensus 131 ~~l~~~p~t~~~~~~~~~~~---~l~~~~~---~p~--~----l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~ 198 (539)
T KOG0548|consen 131 EKLANLPLTNYSLSDPAYVK---ILEIIQK---NPT--S----LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMA 198 (539)
T ss_pred HHhhcChhhhhhhccHHHHH---HHHHhhc---CcH--h----hhcccccHHHHHHHHHHhcCccccccccccccCCCCC
Confidence 22211 1111111111 1111111 111 1 1111111111111111110 0011100000000
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 413 SVVMHGLRREGKLSEACDVVREMVK-KGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQ 491 (701)
Q Consensus 413 ~~ll~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 491 (701)
+ -+.+.. .......++.+ .....-..-...+..+..+..++..|.+.+....+.. -++.-++....+|..
T Consensus 199 ~----p~~~~~---~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e 269 (539)
T KOG0548|consen 199 E----PCKQEH---NGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLE 269 (539)
T ss_pred C----cccccC---CCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHh
Confidence 0 000000 00000000000 0000011224566677777888888888888887764 456666777778888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037695 492 KGDLEEALSLLDDMYLCKKDPDTV-------TYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGR 564 (701)
Q Consensus 492 ~g~~~~A~~~~~~~~~~~~~p~~~-------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 564 (701)
.|.+..+........+.|.. ... .+..+..+|.+.++++.++..|.+.+.....|+. ..+...
T Consensus 270 ~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~ 339 (539)
T KOG0548|consen 270 RGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKE 339 (539)
T ss_pred ccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHH
Confidence 88888877777666655421 111 2233445666778888888888887665433322 233445
Q ss_pred HHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 037695 565 VEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRM 643 (701)
Q Consensus 565 ~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 643 (701)
.+++.+......-.+|. ..-...-+..+.+.|++..|+..|.+++... +-|...|...+-+|.+.|.+..|+.-.+..
T Consensus 340 ~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 340 AEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred HHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56666666555555555 2233334777788888888888888888877 447888888888888888888888888888
Q ss_pred HhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHh
Q 037695 644 FNRNLIPDL-KLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQ 693 (701)
Q Consensus 644 ~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 693 (701)
.+ +.|+. ..|..-+.++....+|++|.+.|.+..+..+.......+++
T Consensus 419 ie--L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~ 467 (539)
T KOG0548|consen 419 IE--LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYR 467 (539)
T ss_pred Hh--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 88 45554 66666677777788888888888888888764444444443
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=1.2e-08 Score=104.54 Aligned_cols=197 Identities=19% Similarity=0.232 Sum_probs=132.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCC-CCCHH
Q 037695 449 LLIQSLCREGKMDGAKKFMQECLNK-----G--CAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYL-----CKK-DPDTV 515 (701)
Q Consensus 449 ~li~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~-~p~~~ 515 (701)
.+...|...+++.+|..+|++++.. | .+--..+++.|...|.+.|++++|...+++..+ .|. .|.+.
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 3555566666666666666665442 1 111234455566667777777776666655442 111 22222
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------
Q 037695 516 -TYTTIIDALSKNGRVEEATELMMKMLSK---GLVPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ-------- 579 (701)
Q Consensus 516 -~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------- 579 (701)
.++.++..|...+++++|..++....+. -..++ ..+++.|...|...|++++|.++++++++..
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 3556667778888888888888776542 11222 4678899999999999999999999888762
Q ss_pred CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 580 KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRT----AS-KAD-ASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 580 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+. ...++.++..|.+.+++.+|.++|.+.... |+ .|+ ..+|..|+..|...|+++.|+++.+.+..
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 11 346788889998889988888888775432 22 223 46789999999999999999999887764
No 84
>PF13041 PPR_2: PPR repeat family
Probab=99.20 E-value=3.3e-11 Score=82.43 Aligned_cols=49 Identities=43% Similarity=0.886 Sum_probs=29.8
Q ss_pred CChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHH
Q 037695 244 PNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLC 292 (701)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~ 292 (701)
||+.+||.+|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4556666666666666666666666666666666666666666665554
No 85
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.20 E-value=1.8e-06 Score=91.49 Aligned_cols=184 Identities=14% Similarity=0.071 Sum_probs=129.8
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 037695 120 DERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVL 199 (701)
Q Consensus 120 ~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 199 (701)
+...|+..|-.+.+.. +.=...|..|...|...-+...|.+.|+..-+.. ..+...+......|++..+++.|..+.
T Consensus 473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence 3445666655544433 2335578999999998888899999998887754 346778889999999999999999883
Q ss_pred HHHHHCC-CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCC
Q 037695 200 SMMQKAA-VAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCS 278 (701)
Q Consensus 200 ~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 278 (701)
-..-+.. ...-...|....-.|...++...|..-|+...+.. +.|...|..+..+|...|++..|.++|.+.... .
T Consensus 550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 3332211 01111223334445667889999999999988764 456788999999999999999999999888764 4
Q ss_pred CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037695 279 PDK-VSYYTVMGYLCKEKRIKEVRDLMEKMVN 309 (701)
Q Consensus 279 pd~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 309 (701)
|+. ..-.-.....+-.|.+.++...+..+..
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 443 2222233445678899999888887765
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=2.2e-06 Score=85.98 Aligned_cols=141 Identities=19% Similarity=0.201 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 037695 494 DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMM--------KMLSKGLVPTVVTYRTVIHRYCQVGRV 565 (701)
Q Consensus 494 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~ 565 (701)
.+.+|.+++...-+..........-.++......|+++.|++++. .+.+.+..| .+...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCC
Confidence 355566666555443222223344445555566677777776666 333333333 3344455556666655
Q ss_pred HHHHHHHHHHHhc----CCChhH----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 037695 566 EDLLKLLEKMLSK----QKCRTA----YNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAY 637 (701)
Q Consensus 566 ~~A~~~~~~~~~~----~p~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 637 (701)
+.|..++..++.- .+.... +...+..-.+.|+-++|..+++++.+.. ++|..+...++.+|+... ++.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d-~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD-PEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC-HHHHH
Confidence 5555555554432 111122 2222223335577777777777776644 446666666666665543 34444
Q ss_pred H
Q 037695 638 K 638 (701)
Q Consensus 638 ~ 638 (701)
.
T Consensus 512 ~ 512 (652)
T KOG2376|consen 512 S 512 (652)
T ss_pred H
Confidence 3
No 87
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.19 E-value=1e-05 Score=84.03 Aligned_cols=500 Identities=14% Similarity=0.136 Sum_probs=275.5
Q ss_pred CCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcC--------C-CCCHHHHHHHHHHHHH
Q 037695 118 QADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRG--------I-ECRPEAFSYLMVAYSR 188 (701)
Q Consensus 118 ~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--------~-~~~~~~~~~li~~~~~ 188 (701)
.|+.+.|++-...+.. ...|..+.+.+.+.++.+-|.-.+..|.... . .++ .+=..+...-..
T Consensus 741 iG~MD~AfksI~~IkS-------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAie 812 (1416)
T KOG3617|consen 741 IGSMDAAFKSIQFIKS-------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIE 812 (1416)
T ss_pred eccHHHHHHHHHHHhh-------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHH
Confidence 3788888877665432 3489999999999999999988888776421 1 121 333334444457
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHH
Q 037695 189 AGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKL 268 (701)
Q Consensus 189 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~ 268 (701)
.|.+++|..+|.+-++ |..|=..|-..|.+++|.++-+.-.+. .. ..||..-...+-..++.+.|++.
T Consensus 813 LgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi--HL-r~Tyy~yA~~Lear~Di~~Aley 880 (1416)
T KOG3617|consen 813 LGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI--HL-RNTYYNYAKYLEARRDIEAALEY 880 (1416)
T ss_pred HhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce--eh-hhhHHHHHHHHHhhccHHHHHHH
Confidence 8999999999999875 334555667789999999988764432 22 24565566677778899999998
Q ss_pred HHHchhCCCCCCHHHHH------HHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHH
Q 037695 269 IDEMPLKGCSPDKVSYY------TVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTY 342 (701)
Q Consensus 269 ~~~m~~~g~~pd~~~~~------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 342 (701)
|++.-.. --..+. .-|..|.+..+-+.-...+.+.+. ..|.++.|+.++...+. |
T Consensus 881 yEK~~~h----afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlE------S~GemdaAl~~Y~~A~D---------~ 941 (1416)
T KOG3617|consen 881 YEKAGVH----AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLE------SVGEMDAALSFYSSAKD---------Y 941 (1416)
T ss_pred HHhcCCh----HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHh------cccchHHHHHHHHHhhh---------h
Confidence 8775321 111111 224455555444444444444433 34778888888777664 6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 037695 343 TAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRRE 422 (701)
Q Consensus 343 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 422 (701)
-.+++..|-.|+.++|-++-++- -|......|.+.|-..|++.+|...|.+... |...|+.|- .
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcK-E 1005 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCK-E 1005 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHH-h
Confidence 66777888888888888776552 2666677788888888888888888876543 222333222 2
Q ss_pred CCHHH----------------HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH--------HHHc--CCC
Q 037695 423 GKLSE----------------ACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQE--------CLNK--GCA 476 (701)
Q Consensus 423 g~~~~----------------A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--------~~~~--~~~ 476 (701)
+++++ |...|++ .|.. +...+..|-+.|.+.+|+++--. ++.. ...
T Consensus 1006 nd~~d~L~nlal~s~~~d~v~aArYyEe---~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1006 NDMKDRLANLALMSGGSDLVSAARYYEE---LGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred cCHHHHHHHHHhhcCchhHHHHHHHHHH---cchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 22221 2222221 1100 11222334455555555443211 1111 223
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------CC----------------CCCCH----HHHHHHHHHHHh
Q 037695 477 VNVVNFTSLIRGFCQKGDLEEALSLLDDMYL----------CK----------------KDPDT----VTYTTIIDALSK 526 (701)
Q Consensus 477 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----------~~----------------~~p~~----~~~~~li~~~~~ 526 (701)
.|+...+-..+.|+...++++|..++-..++ .| -.|+. .....+...|.+
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 3455555555666666666666655433221 11 12222 235556677777
Q ss_pred cCCHHHHHHHHHHHH----------hCCC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHH
Q 037695 527 NGRVEEATELMMKML----------SKGL----------VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYN 586 (701)
Q Consensus 527 ~g~~~~A~~~~~~m~----------~~~~----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 586 (701)
.|.+..|.+-|.+.- +.|- .-..++| .+..-|.+.-+|..--++++.+..-+-...++.
T Consensus 1158 QG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiY-ImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd 1236 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIY-IMAANYLQTLDWQDNPQTMKDIETFYTKGQAFD 1236 (1416)
T ss_pred ccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceee-eehhhhhhhcccccChHHHhhhHhhhhcchhHH
Confidence 887777666554321 1120 0001111 111222222222222222222222221222333
Q ss_pred HHHHHHH---------------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----------hcCChhhHHHHH
Q 037695 587 QVIENLC---------------SFGYLEEAGKILGKVLRTASKADASTCHVLVESYL-----------NKGIPLLAYKVA 640 (701)
Q Consensus 587 ~l~~~~~---------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~g~~~~A~~~~ 640 (701)
.|+..|. ..|-+++|-..+.++...+ .....++.|-.-.. ...+....+...
T Consensus 1237 ~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc 1314 (1416)
T KOG3617|consen 1237 HLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQC 1314 (1416)
T ss_pred HHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3333322 1234455555555554332 12223333321111 112555556666
Q ss_pred HHHHhCCCCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 641 CRMFNRNLIPD----LKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 641 ~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
..|+..-+.|+ ..+|..++..+....+|..|...++.+.++-|
T Consensus 1315 ~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p 1361 (1416)
T KOG3617|consen 1315 TTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVP 1361 (1416)
T ss_pred HHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCC
Confidence 66666544443 37888889999999999999999999988765
No 88
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=8.8e-11 Score=80.29 Aligned_cols=49 Identities=39% Similarity=0.752 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037695 477 VNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALS 525 (701)
Q Consensus 477 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 525 (701)
||+.+||+++++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 89
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.15 E-value=7.2e-07 Score=91.04 Aligned_cols=195 Identities=15% Similarity=0.173 Sum_probs=130.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 037695 345 VVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGK 424 (701)
Q Consensus 345 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 424 (701)
.+.+......+.+|+.+++.+.+.. .-+..|..+...|...|+++.|.++|.+. ..++..|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcccc
Confidence 3455566778888888888887653 23445667778888888888888888543 235567788888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 425 LSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDD 504 (701)
Q Consensus 425 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 504 (701)
|+.|..+-.+. .|.......|-.-..-+-+.|++.+|.++|-.+. .|+ ..|.+|-+.|..+..+++..+
T Consensus 807 w~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 88888776544 3333444555555566677888888887764332 122 346778888888888887776
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 505 MYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLE 573 (701)
Q Consensus 505 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 573 (701)
-.. ..-..|...+..-|-..|+...|...|-+..+ |.+-++.|-.++.|++|.++-+
T Consensus 876 ~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 876 HHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHh
Confidence 521 12234566677777788888888876654432 5566677777788888776554
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.14 E-value=2e-07 Score=96.90 Aligned_cols=290 Identities=16% Similarity=0.164 Sum_probs=174.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH-h----
Q 037695 347 NGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLR-R---- 421 (701)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~---- 421 (701)
..+...|++++|++.+..-... +......+......+.+.|+.++|..++..++..+ |+-..|...+..+. -
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3356677777777777664433 22233444556667777777777777777777764 44444433333332 1
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695 422 -EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKM-DGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEAL 499 (701)
Q Consensus 422 -~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 499 (701)
....+....+++++... .|.......+.-.+.....+ ..+..++..++.+|+|+ +|+.|-..|....+..-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 12456666777766555 23333322222222221122 34455556666666543 3444444555444444444
Q ss_pred HHHHHHHhC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037695 500 SLLDDMYLC----K----------KDPDTV--TYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG 563 (701)
Q Consensus 500 ~~~~~~~~~----~----------~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 563 (701)
.++...... + -+|... ++..+...|...|++++|+++.++.++.. |-.+..|..-++.+-+.|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCC
Confidence 555544321 1 123432 44556777888888999999888888863 333777888888888889
Q ss_pred CHHHHHHHHHHHHhcCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHH--HHHHHHHHhcCChh
Q 037695 564 RVEDLLKLLEKMLSKQKCRT-AYNQVIENLCSFGYLEEAGKILGKVLRTASKADA------STC--HVLVESYLNKGIPL 634 (701)
Q Consensus 564 ~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~--~~l~~~~~~~g~~~ 634 (701)
++.+|.+.++.+...++... +-+..+..+.++|++++|..++....+.+..|.. .+| ...+.+|.+.|++.
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~ 322 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG 322 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999988888888876643 4445566677888999998888877665432221 122 34567788888888
Q ss_pred hHHHHHHHHHh
Q 037695 635 LAYKVACRMFN 645 (701)
Q Consensus 635 ~A~~~~~~~~~ 645 (701)
.|++.|....+
T Consensus 323 ~ALk~~~~v~k 333 (517)
T PF12569_consen 323 LALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHH
Confidence 88887766555
No 91
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.14 E-value=5e-08 Score=96.01 Aligned_cols=216 Identities=13% Similarity=0.015 Sum_probs=123.0
Q ss_pred CCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695 423 GKLSEACDVVREMVKKG-FFPT--PVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEAL 499 (701)
Q Consensus 423 g~~~~A~~~~~~m~~~~-~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 499 (701)
+..+.++.-+.+++... ..|+ ...|..+...+...|+++.|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455666666665432 1111 2345556666677777777777777776653 345667777777777777777777
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037695 500 SLLDDMYLCKKDPD-TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK 578 (701)
Q Consensus 500 ~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 578 (701)
..|+...+. .|+ ..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...|.+....
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 777777663 343 4566666777777777777777777777643 33221111122233456677777777655433
Q ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCC---CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 037695 579 QKCRTAYNQVIENLCSFGYLEEAGKILGKVLR---TAS---KADASTCHVLVESYLNKGIPLLAYKVACRMFNR 646 (701)
Q Consensus 579 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (701)
.+. ..+. ........|+..++ ..+..+.+ ..+ +.....|..++..+.+.|++++|+..|++++..
T Consensus 195 ~~~-~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 195 LDK-EQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred CCc-cccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 221 1111 12222234444333 23333321 111 112356777788888888888888888888773
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=2.1e-06 Score=85.28 Aligned_cols=426 Identities=14% Similarity=0.057 Sum_probs=237.5
Q ss_pred hcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 037695 116 RSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNA 195 (701)
Q Consensus 116 ~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A 195 (701)
.+.|+++.|+..|..+..-. |+|...|+.-..+|+..|++++|.+=-..-++.. |.=+..|+....++.-.|++++|
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred cccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccHHHH
Confidence 44589999999998776655 6688889999999999999999988776666643 22356789999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHH-----HHHHhcCChhHHHHHHH
Q 037695 196 MYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLI-----KGYCDLHRIKDAIKLID 270 (701)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~ 270 (701)
+..|..-.+.. +.|...++.+..++. .+.+. +... .++..|..+. ..+...-.+..-++.+.
T Consensus 90 ~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~~~---~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~ 156 (539)
T KOG0548|consen 90 ILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQLF---TKPYFHEKLANLPLTNYSLSDPAYVKILEIIQ 156 (539)
T ss_pred HHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hhhc---cCcHHHHHhhcChhhhhhhccHHHHHHHHHhh
Confidence 99999988765 556667777777761 11111 1110 0111111111 11111111111111111
Q ss_pred HchhC-CCCCCHHHHHHHHHHHHHcCChhHH-HHHHHHHHhcCCCCCC---------CCcHHHHHHHHHHHHHcCCCcCH
Q 037695 271 EMPLK-GCSPDKVSYYTVMGYLCKEKRIKEV-RDLMEKMVNDSNLFHD---------QGRIEEAKELVNQMSQMGCIPDV 339 (701)
Q Consensus 271 ~m~~~-g~~pd~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~~~~~~~~---------~g~~~~a~~~~~~~~~~~~~p~~ 339 (701)
.-... +...+ ...++.+.......+.- ...-..+.......|. .++..+-.+. .--.
T Consensus 157 ~~p~~l~~~l~---d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~---------k~~a 224 (539)
T KOG0548|consen 157 KNPTSLKLYLN---DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRV---------KEKA 224 (539)
T ss_pred cCcHhhhcccc---cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHH---------HHhh
Confidence 11100 00000 01111111110000000 0000000000011111 0111110000 0011
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 037695 340 VTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGL 419 (701)
Q Consensus 340 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 419 (701)
.-...+.++..+..++..|++-+....+.. -+..-++....+|...|.+..+...-....+.|. -...-|+.+.
T Consensus 225 ~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIa--- 298 (539)
T KOG0548|consen 225 HKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIA--- 298 (539)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHH---
Confidence 224455666666777777777777766653 3444455566666666666666655555443321 0111111111
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695 420 RREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEAL 499 (701)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 499 (701)
..+..+..+|.+.++++.++..|.+.+.....|+.. .+....++++
T Consensus 299 -------------------------k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~ 344 (539)
T KOG0548|consen 299 -------------------------KALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKAL 344 (539)
T ss_pred -------------------------HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHH
Confidence 111223345556677788888887766543332222 2334455555
Q ss_pred HHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037695 500 SLLDDMYLCKKDPDTV-TYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK 578 (701)
Q Consensus 500 ~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 578 (701)
+......- +.|... -...-...+.+.|++..|+..|.+++... |-|...|....-+|.+.|.+..|++-.+..++.
T Consensus 345 k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 345 KEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 55554433 233321 12223567778899999999999988876 667888888888889999999999988888888
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 579 QKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTA 612 (701)
Q Consensus 579 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (701)
+|+ ...|..-+.++....++++|...|.+.++..
T Consensus 422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 887 6677777777888888999999998888764
No 93
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.09 E-value=6.5e-06 Score=87.48 Aligned_cols=560 Identities=13% Similarity=0.001 Sum_probs=292.7
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHH
Q 037695 120 DERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRG-IECRPEAFSYLMVAYSRAGKLRNAMYV 198 (701)
Q Consensus 120 ~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~ 198 (701)
|...|.+.|..+..-. +.+...+....+.|++..+++.|..+.-...+.. ...-...|..+.-.|...++...|+.-
T Consensus 507 Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~ 584 (1238)
T KOG1127|consen 507 DMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCE 584 (1238)
T ss_pred HHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHH
Confidence 5566888888665443 5677889999999999999999999843222211 111223344455567788899999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChH-HHHHHHHHHHhcCChhHHHHHHHHchhC--
Q 037695 199 LSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVL-TYNCLIKGYCDLHRIKDAIKLIDEMPLK-- 275 (701)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 275 (701)
|+...+.. +.|...|..+..+|.++|++..|+++|.+.... .|+.. .---....-+..|.+.+|+..+......
T Consensus 585 fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s 661 (1238)
T KOG1127|consen 585 FQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFS 661 (1238)
T ss_pred HHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 99998776 778889999999999999999999999988765 44322 2112233456788888888888776532
Q ss_pred ----CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH-------HhcCCC-------------------CCCCCcHHHHHH
Q 037695 276 ----GCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKM-------VNDSNL-------------------FHDQGRIEEAKE 325 (701)
Q Consensus 276 ----g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~-------~~~~~~-------------------~~~~g~~~~a~~ 325 (701)
+..--..++..+...+...|-...+...++.- ....-. .|+.-. .....
T Consensus 662 ~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn-~h~l~ 740 (1238)
T KOG1127|consen 662 LERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVN-MHYLI 740 (1238)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchH-HHHHH
Confidence 11111223333333333333333333333222 110100 000000 00001
Q ss_pred H-HHHHHHcCCC--------------------cCHHHHHHHHHHHHh----cC----CHHHHHHHHHHHHHcCCCCCHHH
Q 037695 326 L-VNQMSQMGCI--------------------PDVVTYTAVVNGFCR----VG----ELDQAKKMLQQMYHHGCKPNTVS 376 (701)
Q Consensus 326 ~-~~~~~~~~~~--------------------p~~~~~~~li~~~~~----~g----~~~~a~~~~~~~~~~~~~~~~~~ 376 (701)
+ +.+....+.. .+..+|..+...|.+ .+ +...|+..++..++.. .-+..+
T Consensus 741 il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~ 819 (1238)
T KOG1127|consen 741 ILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGL 819 (1238)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHH
Confidence 1 1111111111 122334444433333 11 2335666666665431 124444
Q ss_pred HHHHHH---------------------------------HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 037695 377 YTAFLN---------------------------------GLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREG 423 (701)
Q Consensus 377 ~~~li~---------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 423 (701)
|+.|-- .+.++.+++.|...|....... +.+...|..........|
T Consensus 820 WnaLGVlsg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG 898 (1238)
T KOG1127|consen 820 WNALGVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVG 898 (1238)
T ss_pred HHHHHHhhccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHH
Confidence 444432 2333445555555555544432 334444544444444555
Q ss_pred CHHHHHHHHHHHH--H--cCCCCCHHHHHHHHHHHHhcCCHHHHHHH----------HHHHHHcCCCCCHHHHHHHHHHH
Q 037695 424 KLSEACDVVREMV--K--KGFFPTPVEINLLIQSLCREGKMDGAKKF----------MQECLNKGCAVNVVNFTSLIRGF 489 (701)
Q Consensus 424 ~~~~A~~~~~~m~--~--~~~~~~~~~~~~li~~~~~~g~~~~a~~~----------~~~~~~~~~~~~~~~~~~ll~~~ 489 (701)
+.-++..+|..-. . .|-.+...-+..........|+.+.-+.. +..... +.+.....|.+.....
T Consensus 899 ~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstl 977 (1238)
T KOG1127|consen 899 RIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTL 977 (1238)
T ss_pred HHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHH
Confidence 5555555555411 1 12122222222222223334443332222 222222 3455666677666666
Q ss_pred HhcCCHHHHHHHHHHHHhC-CCCCCHHHHHH----HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037695 490 CQKGDLEEALSLLDDMYLC-KKDPDTVTYTT----IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGR 564 (701)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~----li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 564 (701)
-..+.+..|..+..+.... ...-+..+|+. +.+.++..|.++.|..-+...-. ..+..+...-+.. .-.++
T Consensus 978 EhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~l-Ffknd 1053 (1238)
T KOG1127|consen 978 EHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTL-FFKND 1053 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHH-HHHhH
Confidence 6677777777666654310 01234444553 23344555666655443322111 1111111111111 33688
Q ss_pred HHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 037695 565 VEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVA 640 (701)
Q Consensus 565 ~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 640 (701)
++++.+.|++++..-.+ ......++.+....+..+.|...+-+..... +++....-.+...+.-..+-.....+.
T Consensus 1054 f~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ild~da~~ssail 1132 (1238)
T KOG1127|consen 1054 FFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSLS-KVQASSLLPLPAVYILDADAHGSSAIL 1132 (1238)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHhC-ccchhhHHHHHHHHHHhhhhhhhHHHH
Confidence 99999999998876433 3456677777778888888988888777654 556555545544444333322222233
Q ss_pred HHH---HhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhh
Q 037695 641 CRM---FNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQR 694 (701)
Q Consensus 641 ~~~---~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 694 (701)
+++ .+.... ..+-....-..|.+.|+-....+.+.++.-.+|..|..=..|..
T Consensus 1133 eel~kl~k~e~~-~~~~~ll~e~i~~~~~r~~~vk~~~qr~~h~~P~~~~~WslL~v 1188 (1238)
T KOG1127|consen 1133 EELEKLLKLEWF-CWPPGLLKELIYALQGRSVAVKKQIQRAVHSNPGDPALWSLLSV 1188 (1238)
T ss_pred HHHHHhhhhHHh-ccChhHHHHHHHHHhhhhHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 333 221111 11111122235778899999999999999888866665555543
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=3.2e-05 Score=80.57 Aligned_cols=249 Identities=14% Similarity=0.146 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCCH----HH
Q 037695 373 NTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVK--KGFFPTP----VE 446 (701)
Q Consensus 373 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~--~~~~~~~----~~ 446 (701)
|+...+...+.++...++++|..++-...+ |...+..|... ++.-..++-+.|.- .+ .|+. ..
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~-nv~vtee~aE~mTp~Kd~-~~~e~~R~~v 1147 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNR-NVRVTEEFAELMTPTKDD-MPNEQERKQV 1147 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcC-CCchhHHHHHhcCcCcCC-CccHHHHHHH
Confidence 555566666666666677777666654443 22223333222 22222222222211 12 2222 24
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH----------------HHHHHHHHhCCC
Q 037695 447 INLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEA----------------LSLLDDMYLCKK 510 (701)
Q Consensus 447 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A----------------~~~~~~~~~~~~ 510 (701)
+..+...|.+.|.+..|-+-|.++-.+ -.-++++.+.|+.++. ...++.+ ..
T Consensus 1148 Leqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtl---DW 1215 (1416)
T KOG3617|consen 1148 LEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTL---DW 1215 (1416)
T ss_pred HHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhc---cc
Confidence 556666777788877777666554322 1234455555654432 1122211 12
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHH
Q 037695 511 DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIE 590 (701)
Q Consensus 511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~ 590 (701)
..++.+...++..|.+..-++.--.+|...... .+.-|..+-.+ .|-.++|.+.+.++.+++.....++.|-.
T Consensus 1216 q~~pq~mK~I~tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydKa---~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~ 1288 (1416)
T KOG3617|consen 1216 QDNPQTMKDIETFYTKGQAFDHLANFYKSCAQI----EIEELQTYDKA---MGALEEAAKCLLKAEQKNMSTTGLDALQE 1288 (1416)
T ss_pred ccChHHHhhhHhhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhHH---hHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 334455555555454444344333333333221 11112111111 24456666666666655433333333222
Q ss_pred HHH-----------hcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 037695 591 NLC-----------SFGYLEEAGKILGKVLRTASKAD----ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD 651 (701)
Q Consensus 591 ~~~-----------~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 651 (701)
-+. -..+..+.+.-...+++....++ ...|..||..+....+++.|...+++|.++.+.-|
T Consensus 1289 ~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~ 1364 (1416)
T KOG3617|consen 1289 DLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVD 1364 (1416)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccc
Confidence 111 12355555666666666554443 35678889999999999999999999999654433
No 95
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.03 E-value=1.8e-08 Score=97.41 Aligned_cols=147 Identities=20% Similarity=0.224 Sum_probs=65.1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 037695 489 FCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ----VGR 564 (701)
Q Consensus 489 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~ 564 (701)
+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+. ..|. +...++.++.. .++
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchh
Confidence 34445555555554321 23344444555555555555555555555543 2222 22222222221 123
Q ss_pred HHHHHHHHHHHHhcC-CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hhHHHHHHH
Q 037695 565 VEDLLKLLEKMLSKQ-KCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP-LLAYKVACR 642 (701)
Q Consensus 565 ~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 642 (701)
+.+|..+|+++..+. +++.+.+.++.+....|++++|..++.+++..++. ++.++..++......|+. +.+.+++.+
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 555555555555443 22444455555555555555555555555443322 444444455444444444 333344444
Q ss_pred HHh
Q 037695 643 MFN 645 (701)
Q Consensus 643 ~~~ 645 (701)
+..
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 444
No 96
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.03 E-value=1.8e-05 Score=81.24 Aligned_cols=215 Identities=17% Similarity=0.228 Sum_probs=154.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695 384 LCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGA 463 (701)
Q Consensus 384 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 463 (701)
+...|+++.|...|-+.. .....+.+......|.+|+.+++.+.... .-..-|..+.+-|+..|+++.|
T Consensus 716 l~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~a 784 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIA 784 (1636)
T ss_pred HHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHH
Confidence 344566666666554322 12234556677888999999999887763 2344577788889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037695 464 KKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK 543 (701)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (701)
.++|.+. ..++-.|.+|.+.|+|+.|.++-.+... .......|.+-..-+-..|++.+|.++|-..
T Consensus 785 e~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti--- 850 (1636)
T KOG3616|consen 785 EELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI--- 850 (1636)
T ss_pred HHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc---
Confidence 9998753 3456778899999999999999877742 3344556666666777889999999888544
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037695 544 GLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCH 621 (701)
Q Consensus 544 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 621 (701)
| .|+. .|..|-+.|..++.+++..+- +|+ ..+...++.-|-..|+++.|...|-++- -|.
T Consensus 851 ~-~p~~-----aiqmydk~~~~ddmirlv~k~---h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~k 912 (1636)
T KOG3616|consen 851 G-EPDK-----AIQMYDKHGLDDDMIRLVEKH---HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFK 912 (1636)
T ss_pred c-CchH-----HHHHHHhhCcchHHHHHHHHh---ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHH
Confidence 3 4543 356788999999888877654 344 4677788888999999999998887653 245
Q ss_pred HHHHHHHhcCChhhHHHHHH
Q 037695 622 VLVESYLNKGIPLLAYKVAC 641 (701)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~ 641 (701)
+.+.+|...+-+++|..+.+
T Consensus 913 aavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 913 AAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHhhhhhhHHHHHHHHh
Confidence 56677777787877776654
No 97
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.02 E-value=9.1e-06 Score=76.02 Aligned_cols=333 Identities=13% Similarity=0.087 Sum_probs=204.3
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCCh-HHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHH-H
Q 037695 210 NLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNV-LTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYT-V 287 (701)
Q Consensus 210 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~-l 287 (701)
++.-.--+...+...|++..|+..|....+. .|+. .++---...|...|+...|+.-|....+. +||-..-.. -
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 3334444566677777888888888777753 2332 22222345677778877777777777764 666433222 2
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 288 MGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYH 367 (701)
Q Consensus 288 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 367 (701)
...+.+.|.++.|..-|+.+++. .|..|...++..-+..+.+. ......+..+...|+...|+.....+++
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~------~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEH------WVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHH------HHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 34556777777777777777552 22333333333322222211 1123334455567777777777777776
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037695 368 HGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEI 447 (701)
Q Consensus 368 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 447 (701)
.. +.|...|..-..+|...|.+..|+.-+....+.. ..+..++..+-..+...|+.+.++...++-++. .|+...+
T Consensus 184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~C 259 (504)
T KOG0624|consen 184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLC 259 (504)
T ss_pred cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhH
Confidence 53 4566677777777777777777776666655432 345555555666667777777777777766665 3443221
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHH
Q 037695 448 NLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTV---TYTTIIDAL 524 (701)
Q Consensus 448 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~li~~~ 524 (701)
-.. | ..+.+..+.+..|. .....++|.++++..+..++........ .+..+-.++
T Consensus 260 f~~---Y---KklkKv~K~les~e----------------~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~ 317 (504)
T KOG0624|consen 260 FPF---Y---KKLKKVVKSLESAE----------------QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCY 317 (504)
T ss_pred HHH---H---HHHHHHHHHHHHHH----------------HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecc
Confidence 111 1 11222222222222 2345677888888888877643321222 344566777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 037695 525 SKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR 582 (701)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 582 (701)
...+++.+|++...+.++.. +.|..++.--..+|.-...++.|+.-|+++.+.+++.
T Consensus 318 ~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 318 REDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred cccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 78899999999999998753 3448888888999999999999999999999888763
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.01 E-value=3.2e-06 Score=86.66 Aligned_cols=199 Identities=13% Similarity=0.047 Sum_probs=97.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHH
Q 037695 483 TSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGL-VPTV--VTYRTVIHRY 559 (701)
Q Consensus 483 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~l~~~~ 559 (701)
..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|..++++...... .|+. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 344455556666666666666665532 22344555556666666666666666666555321 1221 2234455566
Q ss_pred HhcCCHHHHHHHHHHHHhcCCChh----HHH--HHHHHHHhcCCHHHHHHH---HHHHHHcCC-CCCHHHHHHHHHHHHh
Q 037695 560 CQVGRVEDLLKLLEKMLSKQKCRT----AYN--QVIENLCSFGYLEEAGKI---LGKVLRTAS-KADASTCHVLVESYLN 629 (701)
Q Consensus 560 ~~~g~~~~A~~~~~~~~~~~p~~~----~~~--~l~~~~~~~g~~~~A~~~---~~~~~~~~~-~~~~~~~~~l~~~~~~ 629 (701)
...|++++|..+++++....|... .++ .++..+...|....+.++ ......... ..........+.++..
T Consensus 197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 276 (355)
T cd05804 197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG 276 (355)
T ss_pred HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence 666666666666666654433111 101 222223333332222222 111111000 1111222245556666
Q ss_pred cCChhhHHHHHHHHHhCCCC----C----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 630 KGIPLLAYKVACRMFNRNLI----P----DLKLCKKVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 630 ~g~~~~A~~~~~~~~~~~~~----p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
.|+.+.|...++.+...... . .....-..+..+...|++++|.+.+..++...
T Consensus 277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 77777777777666542111 0 11233334445667888888888887776654
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.97 E-value=6.2e-05 Score=87.67 Aligned_cols=303 Identities=11% Similarity=0.039 Sum_probs=185.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC------CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hh
Q 037695 344 AVVNGFCRVGELDQAKKMLQQMYHHGC------KPNT--VSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNA----IT 411 (701)
Q Consensus 344 ~li~~~~~~g~~~~a~~~~~~~~~~~~------~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~ 411 (701)
.....+...|+++++..++......-- .+.. .....+...+...|+++.|...+++........+. ..
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a 493 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVA 493 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 344455677888888888877654210 1111 11222334456788899998888887653111121 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CH
Q 037695 412 YSVVMHGLRREGKLSEACDVVREMVKK----GFF-PTPVEINLLIQSLCREGKMDGAKKFMQECLNK----GCA--V-NV 479 (701)
Q Consensus 412 ~~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~ 479 (701)
.+.+...+...|++++|...+.+.... |.. ....++..+...+...|+++.|...+++.... +.. + ..
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 445556677789999998888877643 111 11234455666778889999998888776552 211 1 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHH--H
Q 037695 480 VNFTSLIRGFCQKGDLEEALSLLDDMYLCK--KDP--DTVTYTTIIDALSKNGRVEEATELMMKMLSK--GLVPTVV--T 551 (701)
Q Consensus 480 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~--~ 551 (701)
..+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+++.|...+..+... ....... .
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 334455566777799999988888765421 112 1334445666777889999998888877542 1111111 0
Q ss_pred H--HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-h----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCC-HHH
Q 037695 552 Y--RTVIHRYCQVGRVEDLLKLLEKMLSKQKC-R----TAYNQVIENLCSFGYLEEAGKILGKVLRTA----SKAD-AST 619 (701)
Q Consensus 552 ~--~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~ 619 (701)
. ...+..+...|+.+.|.+++.......+. . ..+..++.++...|++++|...+++++... ..++ ..+
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 0 11223445578888888887766543211 1 113456777888899999999988876642 1111 235
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhC
Q 037695 620 CHVLVESYLNKGIPLLAYKVACRMFNR 646 (701)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (701)
...++.++...|+.++|...+.++++.
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 566777888999999999999888873
No 100
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.96 E-value=0.0002 Score=83.46 Aligned_cols=336 Identities=13% Similarity=0.067 Sum_probs=215.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CCh--hhHHHHHHHH
Q 037695 348 GFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWT------PNA--ITYSVVMHGL 419 (701)
Q Consensus 348 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~--~~~~~ll~~~ 419 (701)
.....|+++.+..++..+.......+..........+...|+++++..++......--. +.. .....+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777777777665532111112222333444556789999999988877542111 111 1122233445
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHH
Q 037695 420 RREGKLSEACDVVREMVKKGFFPTP----VEINLLIQSLCREGKMDGAKKFMQECLNKGC---AV--NVVNFTSLIRGFC 490 (701)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~ll~~~~ 490 (701)
...|++++|...+++....-...+. ...+.+...+...|+++.|...+.+...... .+ ....+..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6799999999999988763111121 2345566677889999999999988765311 11 1234555667788
Q ss_pred hcCCHHHHHHHHHHHHh----CCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHH
Q 037695 491 QKGDLEEALSLLDDMYL----CKKD--P-DTVTYTTIIDALSKNGRVEEATELMMKMLSK--GLVP--TVVTYRTVIHRY 559 (701)
Q Consensus 491 ~~g~~~~A~~~~~~~~~----~~~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~~~~~l~~~~ 559 (701)
..|+++.|...+++... .+.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999999887654 2211 1 2233455666777889999999999887653 1112 233455566778
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC---hhHH-----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHH
Q 037695 560 CQVGRVEDLLKLLEKMLSKQKC---RTAY-----NQVIENLCSFGYLEEAGKILGKVLRTASKADA---STCHVLVESYL 628 (701)
Q Consensus 560 ~~~g~~~~A~~~~~~~~~~~p~---~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~ 628 (701)
...|+++.|...+..+...... ...+ ...+..+...|+.+.|..++............ ..+..++.++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999999888653211 1111 11224445689999999998776542211111 12456777899
Q ss_pred hcCChhhHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 629 NKGIPLLAYKVACRMFNR----NLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
..|++++|...++++... +..++ ..+...++.++.+.|+.++|...+.++.+...
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 999999999999988763 22222 24566778889999999999999999987653
No 101
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.93 E-value=3.2e-06 Score=77.38 Aligned_cols=190 Identities=15% Similarity=0.047 Sum_probs=96.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037695 482 FTSLIRGFCQKGDLEEALSLLDDMYLC-KKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYC 560 (701)
Q Consensus 482 ~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 560 (701)
+|.-...+.+.++++.|.+.+-.|.-. .-..|++|...+.-. ...+++-+..+-+..+...+ |-...|+..++-.||
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence 444444566778888888877777421 123355554433211 23455555566666666654 345678888888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCC---
Q 037695 561 QVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCS-FGYLEEAGKILGKVLRTASKADASTCHVLVES--YLNKGI--- 632 (701)
Q Consensus 561 ~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~--- 632 (701)
+..-++.|..++.+-....-. .+-...+++++.. .-..++|.+-++.+...- -...-...+.. -..+.+
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r~~~dd~a 398 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEARHNRDDEA 398 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccHHH
Confidence 888887777666432211000 1112234444442 345556555544432110 00000011111 111111
Q ss_pred hhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 633 PLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVE 680 (701)
Q Consensus 633 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (701)
...|++-|+..++. -.++....++.|++..++..+.+.|.+-.+
T Consensus 399 ~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 399 IRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 11233334433331 124455667788899999999999987765
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=1.1e-05 Score=82.51 Aligned_cols=303 Identities=11% Similarity=0.025 Sum_probs=189.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 037695 339 VVTYTAVVNGFCRVGELDQAKKMLQQMYHHGC-KPNTV-SYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVM 416 (701)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 416 (701)
...|..+...+...|+.+.+...+........ .++.. ........+...|++++|..++++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 44566666777777888887777766654321 12221 12222335567899999999999988753 334444442 2
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695 417 HGLRR----EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQK 492 (701)
Q Consensus 417 ~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 492 (701)
..+.. .+....+...+... ....+........+...+...|++++|...+++..+.. +.+...+..+...+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 22222 44555555555441 11122233455566678889999999999999999874 44677788889999999
Q ss_pred CCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCH
Q 037695 493 GDLEEALSLLDDMYLCKK-DPDT--VTYTTIIDALSKNGRVEEATELMMKMLSKGL-VPTVVTY-R--TVIHRYCQVGRV 565 (701)
Q Consensus 493 g~~~~A~~~~~~~~~~~~-~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~l~~~~~~~g~~ 565 (701)
|++++|...+++...... .|+. ..|..+...+...|++++|..++++...... .+..... . .++..+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999999876432 1232 3456788889999999999999999865432 1222211 1 333344445544
Q ss_pred HHHHHH--H-HHHHhcCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---C-----CHHHHHHHHHHHHhcC
Q 037695 566 EDLLKL--L-EKMLSKQKC---RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK---A-----DASTCHVLVESYLNKG 631 (701)
Q Consensus 566 ~~A~~~--~-~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-----~~~~~~~l~~~~~~~g 631 (701)
..+.+. + .......+. .......+.++...|+.++|..+++.+...... - ...........+...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 433333 2 221111121 122235677788899999999999888653322 0 1222333445678999
Q ss_pred ChhhHHHHHHHHHh
Q 037695 632 IPLLAYKVACRMFN 645 (701)
Q Consensus 632 ~~~~A~~~~~~~~~ 645 (701)
++++|+..+..++.
T Consensus 322 ~~~~A~~~L~~al~ 335 (355)
T cd05804 322 NYATALELLGPVRD 335 (355)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999888876
No 103
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.92 E-value=1.2e-07 Score=91.77 Aligned_cols=169 Identities=14% Similarity=0.076 Sum_probs=91.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhH---HHHHHHHHHhcCCH
Q 037695 522 DALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTA---YNQVIENLCSFGYL 598 (701)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~ 598 (701)
..+...|++++|++++... .+.+.....+..|.+.++++.|.+.++.|.+...+... ..+++..+.-..++
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhH
Confidence 3444556666666665431 34555555666666667777777777666655444211 11222222222356
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHH
Q 037695 599 EEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKS-EEADTLMLR 677 (701)
Q Consensus 599 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 677 (701)
.+|..+|+++.+ .+.+++.+.+.++.++...|++++|.+.+++++..+.. +..+...++.+....|+. +.+.+++.+
T Consensus 184 ~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 667777766544 34556666666666666677777777666666653332 335555556566666666 455566666
Q ss_pred HHHcCCCCCchHHHHhhhhhh
Q 037695 678 FVERGHIQPKSEEHLQRQRVF 698 (701)
Q Consensus 678 ~~~~~~~~~~~~~~l~~~~~~ 698 (701)
+.+..|.+|-....-.....|
T Consensus 262 L~~~~p~h~~~~~~~~~~~~F 282 (290)
T PF04733_consen 262 LKQSNPNHPLVKDLAEKEAEF 282 (290)
T ss_dssp CHHHTTTSHHHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHH
Confidence 666666555554444443333
No 104
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.91 E-value=4.9e-07 Score=92.83 Aligned_cols=225 Identities=16% Similarity=0.097 Sum_probs=178.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 037695 440 FFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTT 519 (701)
Q Consensus 440 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 519 (701)
.+|-...-..+...+...|-...|..++++. ..|..++.+|+..|+..+|..+..+-.+ -+|+...|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHH
Confidence 3444445566777788889999999998854 4577788899999999999998888776 4788888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCH
Q 037695 520 IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYL 598 (701)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 598 (701)
+++......-+++|.++.+..... +-..+.....+.++++++.+.|+...+.+|- ..+|..++.+..+.+++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 888877777788888887765432 2233333344578999999999999888887 78898899888999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 599 EEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRF 678 (701)
Q Consensus 599 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (701)
+.|.+.|.......+ .+...||.+..+|.+.|+..+|...++++.+.+-. +..++....-...+.|.+++|.+.+.++
T Consensus 536 q~av~aF~rcvtL~P-d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEP-DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcCC-CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999999999887653 36788999999999999999999999999997633 4466666666788899999999999988
Q ss_pred HHcCCC
Q 037695 679 VERGHI 684 (701)
Q Consensus 679 ~~~~~~ 684 (701)
.+....
T Consensus 614 l~~~~~ 619 (777)
T KOG1128|consen 614 LDLRKK 619 (777)
T ss_pred HHhhhh
Confidence 776543
No 105
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=2.7e-07 Score=92.34 Aligned_cols=97 Identities=14% Similarity=0.079 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHH
Q 037695 512 PDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIE 590 (701)
Q Consensus 512 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~ 590 (701)
+|...+..|.-.|.-.|.+++|+..|+..+... |-|..+|+.|...++...+.++|+..|.++++..|. +.+...|+-
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGI 506 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence 444455555555555555555555555555532 334445555555555555555555555555555555 445555555
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 037695 591 NLCSFGYLEEAGKILGKVL 609 (701)
Q Consensus 591 ~~~~~g~~~~A~~~~~~~~ 609 (701)
.|...|.+++|...|-.++
T Consensus 507 S~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 507 SCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred hhhhhhhHHHHHHHHHHHH
Confidence 5555555555555555443
No 106
>PLN02789 farnesyltranstransferase
Probab=98.89 E-value=2.3e-06 Score=83.96 Aligned_cols=218 Identities=14% Similarity=0.060 Sum_probs=130.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHH
Q 037695 457 EGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG-DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRV--EEA 533 (701)
Q Consensus 457 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~A 533 (701)
.+..++|+.++.+++... +-+..+|+....++...| ++++++..++++.+.. +.+..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 445556666666665542 223444554444555555 4677777777776643 33444555554444455542 566
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc---CC----HHHHHHHH
Q 037695 534 TELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF---GY----LEEAGKIL 605 (701)
Q Consensus 534 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~----~~~A~~~~ 605 (701)
+.+++++++.. +-+..+|.....++...|+++++++.++++++.+|. ..+|+.....+.+. |. .++++...
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~ 206 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT 206 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence 77777777654 445667777777777777777777777777777666 55666665555443 22 24566666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc----CChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC---------------
Q 037695 606 GKVLRTASKADASTCHVLVESYLNK----GIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEG--------------- 666 (701)
Q Consensus 606 ~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--------------- 666 (701)
.+++...+. |...|+.+...+... ++..+|...+.+..+.++. +......+++.|....
T Consensus 207 ~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~-s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T PLN02789 207 IDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN-HVFALSDLLDLLCEGLQPTAEFRDTVDTLAE 284 (320)
T ss_pred HHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC-cHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence 677666543 666777777766663 3345577777666653222 3456666777776422
Q ss_pred ---CHHHHHHHHHHHH
Q 037695 667 ---KSEEADTLMLRFV 679 (701)
Q Consensus 667 ---~~~~A~~~~~~~~ 679 (701)
..++|..+++.+.
T Consensus 285 ~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 285 ELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccHHHHHHHHHHHH
Confidence 3467888888774
No 107
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=3.8e-07 Score=91.25 Aligned_cols=251 Identities=16% Similarity=0.112 Sum_probs=176.1
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695 419 LRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEA 498 (701)
Q Consensus 419 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 498 (701)
+.+.|++.+|.-.|+..++.. |-+...|..|....+..++-..|+..++++++.. +.+......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 456777777777777777764 4456677777777777777778888888887763 44667777777778888888888
Q ss_pred HHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695 499 LSLLDDMYLCKKD--------PDTVTYTTIIDALSKNGRVEEATELMMKMLS-KGLVPTVVTYRTVIHRYCQVGRVEDLL 569 (701)
Q Consensus 499 ~~~~~~~~~~~~~--------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~ 569 (701)
++.++.-+....+ ++...-.. ..+..........++|-++.. .+..+|+.....|.-.|.-.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8887776542210 00000000 111112223344555555544 454578888899999999999999999
Q ss_pred HHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-
Q 037695 570 KLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRN- 647 (701)
Q Consensus 570 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 647 (701)
..|+.++...|+ ...||.|+..++...+.++|+..|.+++++.+..-. +...|+-.|...|.+++|.+.|-.++...
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR-~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR-VRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee-eehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 999999999998 789999999999999999999999999997654333 34467778999999999999988776521
Q ss_pred --------CCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 037695 648 --------LIPDLKLCKKVSERLILEGKSEEADTL 674 (701)
Q Consensus 648 --------~~p~~~~~~~l~~~~~~~g~~~~A~~~ 674 (701)
..++..+|..|-.++...++.+-+.+.
T Consensus 530 ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 530 KSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred cccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 112234666666666667776645443
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.87 E-value=7.2e-07 Score=81.49 Aligned_cols=121 Identities=10% Similarity=0.063 Sum_probs=59.1
Q ss_pred cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCC--hhhHH
Q 037695 562 VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES-YLNKGI--PLLAY 637 (701)
Q Consensus 562 ~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~--~~~A~ 637 (701)
.++.+++...+++.+..+|+ ...|..++..|...|++++|...|+++++..+. +...+..++.+ +...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 34444555555555544444 445555555555555555555555555554422 44444444443 234444 24555
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 638 KVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHI 684 (701)
Q Consensus 638 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 684 (701)
.+++++++.+.. +...+..++..+.+.|++++|+..|+++++..+.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 555555552222 2344455555555555555555555555555443
No 109
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.86 E-value=5.1e-07 Score=86.28 Aligned_cols=186 Identities=12% Similarity=0.060 Sum_probs=127.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---
Q 037695 477 VNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPD-T---VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTV--- 549 (701)
Q Consensus 477 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~--- 549 (701)
.....+..+...+...|+++.|...|+++... .|+ . ..+..+..++...|++++|...++++.+.. +.+.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchH
Confidence 35566777777888888888888888888764 333 1 356677788888888888888888888753 2122
Q ss_pred HHHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037695 550 VTYRTVIHRYCQV--------GRVEDLLKLLEKMLSKQKCRT-AYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTC 620 (701)
Q Consensus 550 ~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 620 (701)
.++..+..++... |++++|.+.++++....|... .+..+..... .... . ....
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~---~-----------~~~~ 169 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR---L-----------AGKE 169 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH---H-----------HHHH
Confidence 2455555555554 678888888888888877732 2222211110 0000 0 0011
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCC-CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 621 HVLVESYLNKGIPLLAYKVACRMFNRNL-IPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 621 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
..++..|...|++.+|+..++++.+... .|. ...+..++.++.+.|++++|..+++.+....+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 2566778999999999999999998433 232 36788899999999999999999998887654
No 110
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.84 E-value=2.6e-06 Score=93.38 Aligned_cols=233 Identities=13% Similarity=0.090 Sum_probs=183.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 037695 441 FPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV-----NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTV 515 (701)
Q Consensus 441 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (701)
|-....|-..|......++.++|.++.++++.. +.+ -...|.++++.-...|.-+...++|+++.+. .-...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHH
Confidence 445567888888888999999999999988764 211 2456888888888888888899999999873 33356
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---hhHHHHHHHHH
Q 037695 516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC---RTAYNQVIENL 592 (701)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~ 592 (701)
.|..|...|.+.+++++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++++.-|. .......+..-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 7889999999999999999999999986 3356788999999999999999999999999988777 34455667777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCCHHH
Q 037695 593 CSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL--KLCKKVSERLILEGKSEE 670 (701)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~ 670 (701)
.+.|+.+.+..+|+..+...++ -...|+.++.+-.++|+.+.+..+|+++...++.|.. ..|..++..=-..|+-..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 7899999999999999886544 6678999999999999999999999999998887764 556655544445566444
Q ss_pred HHHHHHHH
Q 037695 671 ADTLMLRF 678 (701)
Q Consensus 671 A~~~~~~~ 678 (701)
+..+=.++
T Consensus 1690 vE~VKarA 1697 (1710)
T KOG1070|consen 1690 VEYVKARA 1697 (1710)
T ss_pred HHHHHHHH
Confidence 43333333
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=1.4e-06 Score=89.50 Aligned_cols=219 Identities=13% Similarity=0.044 Sum_probs=182.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695 407 PNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLI 486 (701)
Q Consensus 407 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 486 (701)
|--..-..+...+...|-...|..+++++. .+..++.+|+..|+..+|..+..+-.++ +|++..|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333344556778888999999999998653 4567888999999999999999888874 78999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037695 487 RGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVE 566 (701)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 566 (701)
+......-+++|.++++..... .-..+.......+++.++.+.|+.-.+.. +.-..+|..+..+..+.+++.
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhH
Confidence 9888888899999999876432 11122222344789999999999887764 556788998988999999999
Q ss_pred HHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 567 DLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 567 ~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
.|.+.|...+...|+ ...|+++..+|.+.|+..+|...++++++.+ ..+..+|...+-....-|.++.|++.+.++.+
T Consensus 537 ~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 999999999999999 7899999999999999999999999999988 55778888888888999999999999999887
No 112
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=1e-05 Score=74.23 Aligned_cols=195 Identities=14% Similarity=0.153 Sum_probs=97.8
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHH
Q 037695 144 YYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNT-AIHVLV 222 (701)
Q Consensus 144 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~~~~ 222 (701)
+.+++..+.+..++.+|.+++....++. +.+....+.+..+|-+..++..|-.+|+++-.. .|...-|.. -.+.+-
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 4455555566666666666666655543 224555566666666666666666666666543 233332221 234444
Q ss_pred ccCCHhHHHHHHHHHHhCCCCCChHHHHHHHH--HHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 037695 223 VGNKLAKALRFLERMQLAGITPNVLTYNCLIK--GYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEV 300 (701)
Q Consensus 223 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a 300 (701)
+.+.+..|+.+...|... |+...-..-+. .....+++..+..++++....| +..+.+...-...+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 556666666666665532 22211111111 1223455555666665554322 222222222223344444444
Q ss_pred HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 301 RDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCK 371 (701)
Q Consensus 301 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~ 371 (701)
.+-|+...+ -.|..| ...|+..+ ++.+.|+++.|++...+++++|++
T Consensus 164 vqkFqaAlq----------------------vsGyqp-llAYniAL-aHy~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 164 VQKFQAALQ----------------------VSGYQP-LLAYNLAL-AHYSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred HHHHHHHHh----------------------hcCCCc-hhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhh
Confidence 444444333 123333 34455443 445567777777777777777654
No 113
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.81 E-value=0.00023 Score=71.17 Aligned_cols=444 Identities=12% Similarity=0.131 Sum_probs=253.0
Q ss_pred CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 037695 137 YRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNT 216 (701)
Q Consensus 137 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 216 (701)
.|-|..+|+.||+-+... .++++.+.++++... .+..+..|..-|..-.+..+++....+|.+.... ..+...|..
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~l 91 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKL 91 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHH
Confidence 477888999999877666 889999999998875 4567888999999988999999999999887754 355667777
Q ss_pred HHHHHHc-cCCHhH----HHHHHHH-HHhCCCCCCh-HHHHHHHHH---------HHhcCChhHHHHHHHHchhCCCCC-
Q 037695 217 AIHVLVV-GNKLAK----ALRFLER-MQLAGITPNV-LTYNCLIKG---------YCDLHRIKDAIKLIDEMPLKGCSP- 279 (701)
Q Consensus 217 ll~~~~~-~g~~~~----A~~~~~~-m~~~g~~~~~-~~~~~li~~---------~~~~g~~~~A~~~~~~m~~~g~~p- 279 (701)
-|..--+ .|+... ..+.|+- +.+.|+.+-. ..|+.-+.. |..+.+++...+++.++...-+.-
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl 171 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL 171 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence 6665443 233222 2223333 2334544332 234443322 334456677778888877542110
Q ss_pred -----CHHHHHHHHHHHH-------HcCChhHHHHHHHHHHhc-------CCCCCCCCcHHHHHH--HHHHHHHc----C
Q 037695 280 -----DKVSYYTVMGYLC-------KEKRIKEVRDLMEKMVND-------SNLFHDQGRIEEAKE--LVNQMSQM----G 334 (701)
Q Consensus 280 -----d~~~~~~ll~~~~-------~~g~~~~a~~~~~~~~~~-------~~~~~~~g~~~~a~~--~~~~~~~~----~ 334 (701)
|-.+|..-|.... +...+..|+++++++... ....|..|.-++..+ ++...++. +
T Consensus 172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence 1111211111111 122334444444444321 122233333333222 22212111 1
Q ss_pred CC-cCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCCCCHHHH-H----HHHHHHHhcCC-------HHHHHHHHHHH
Q 037695 335 CI-PDVVTYTAVVNGFCRVGELDQAKKMLQQ-MYHHGCKPNTVSY-T----AFLNGLCHNGK-------SLEAREMINTS 400 (701)
Q Consensus 335 ~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~-~----~li~~~~~~g~-------~~~A~~~~~~~ 400 (701)
+. .+...... ...-++++ |.-.+..|+.... . ..-+.+...|+ .+++..+++..
T Consensus 252 L~t~~~~~~~~------------Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~ 319 (656)
T KOG1914|consen 252 LRTLDGTMLTR------------RVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERA 319 (656)
T ss_pred cccccccHHHH------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHH
Confidence 11 00000000 00001111 1111222221110 0 01112233333 34555566655
Q ss_pred HhCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695 401 EEEWWTPNAITYSVVMHGLRR---EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV 477 (701)
Q Consensus 401 ~~~~~~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 477 (701)
...-...+..+|..+...--. .+..+....++++++..-..--..+|..++....+..-+..|..+|.++.+.+..+
T Consensus 320 I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~ 399 (656)
T KOG1914|consen 320 IEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR 399 (656)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc
Confidence 543222333344333322111 12356667777777665333334567788888888888999999999999887766
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHH
Q 037695 478 -NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPT--VVTYRT 554 (701)
Q Consensus 478 -~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ 554 (701)
++.++++++.-||. ++..-|.++|+--++.- .-+..--...+.-+...++-..|..+|++....+++|+ ...|..
T Consensus 400 hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r 477 (656)
T KOG1914|consen 400 HHVFVAAALMEYYCS-KDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDR 477 (656)
T ss_pred chhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHH
Confidence 78888888887775 77899999999866531 22333345567777888999999999999999866665 578999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC--h---hHHHHHHHHHHhcCCH
Q 037695 555 VIHRYCQVGRVEDLLKLLEKMLSKQKC--R---TAYNQVIENLCSFGYL 598 (701)
Q Consensus 555 l~~~~~~~g~~~~A~~~~~~~~~~~p~--~---~~~~~l~~~~~~~g~~ 598 (701)
++.--+.-|+...+.++-+++....|. . ..-..+++.|.-.+.+
T Consensus 478 ~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 478 MLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence 999999999999999998888776652 1 2334455555544443
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.81 E-value=0.00023 Score=71.14 Aligned_cols=149 Identities=16% Similarity=0.187 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695 495 LEEALSLLDDMYLCK-KDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVP-TVVTYRTVIHRYCQVGRVEDLLKLL 572 (701)
Q Consensus 495 ~~~A~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 572 (701)
.+.....++++...- +.| ..+|..+++.-.+..-+..|..+|.++.+.+..+ +...+++++.-+| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 555566666665422 233 3467777777778888889999999999887666 6677777777665 57888999999
Q ss_pred HHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 573 EKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 573 ~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+.-+++.++ +.-....++-+...|+-..|..+|++++.....++ ..+|..++.-=..-|+...++++-+++..
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 988888888 44456788888888999999999999988744444 46888999888888999998888887766
No 115
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.80 E-value=0.00041 Score=73.72 Aligned_cols=223 Identities=10% Similarity=0.031 Sum_probs=140.9
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 037695 119 ADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYV 198 (701)
Q Consensus 119 ~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 198 (701)
++++.|+.-...+.++++..+-+.++.++. +.|.|+.++|..+++.....+.. |..|...+-..|.+.++.++|..+
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 567889998888888864443333343333 56889999999999888776654 888999999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC----------hhHHHHH
Q 037695 199 LSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHR----------IKDAIKL 268 (701)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~----------~~~A~~~ 268 (701)
|+..... .|+......+..+|++.+.+.+-.++--+|.+. ++-+.+.+=++++.+...-. ..-|.+.
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 9999865 577888888889999988877666555555543 34455555555555554221 1224445
Q ss_pred HHHchhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 037695 269 IDEMPLKG-CSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVN 347 (701)
Q Consensus 269 ~~~m~~~g-~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 347 (701)
++.+.+.+ .--...-...-...+-..|++++|..++.. ...+.-...+...-+.-+.
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~----------------------~la~~l~~~~~~l~~~~~d 234 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAI----------------------TLAEKLTSANLYLENKKLD 234 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHH----------------------HHHHhccccchHHHHHHHH
Confidence 55554432 111111112222233344444444444421 1112222234444455667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 037695 348 GFCRVGELDQAKKMLQQMYHHG 369 (701)
Q Consensus 348 ~~~~~g~~~~a~~~~~~~~~~~ 369 (701)
.+...+++.+..++-.++...|
T Consensus 235 llk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 235 LLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhcChHHHHHHHHHHHHhC
Confidence 7777888888888888887765
No 116
>PLN02789 farnesyltranstransferase
Probab=98.75 E-value=1.8e-05 Score=77.84 Aligned_cols=206 Identities=10% Similarity=0.045 Sum_probs=141.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--H
Q 037695 420 RREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREG-KMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDL--E 496 (701)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~--~ 496 (701)
...++.++|+.+..++++.. +-+..+|+..-..+...| ++++++..++.+.... +-+..+|+.....+.+.|+. +
T Consensus 48 ~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhH
Confidence 34556677777777777663 333445555555555556 5678888888777663 33555666555555555553 6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC----HHHHH
Q 037695 497 EALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQV---GR----VEDLL 569 (701)
Q Consensus 497 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~ 569 (701)
+++.+++.+.+.. +-+..+|+....++...|+++++++.++++++.+ +-+..+|+.....+.+. |. .++++
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 7788888887654 4467788888888888888999999999988875 44566676666555544 22 25678
Q ss_pred HHHHHHHhcCCC-hhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695 570 KLLEKMLSKQKC-RTAYNQVIENLCS----FGYLEEAGKILGKVLRTASKADASTCHVLVESYLNK 630 (701)
Q Consensus 570 ~~~~~~~~~~p~-~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 630 (701)
.+..+++...|. ..+|+.+...+.. .++..+|...+.++...+ ..++..+..|+..|+..
T Consensus 204 ~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 204 KYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 888888888887 6788888888877 345577888888877654 33667777888888763
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=1.6e-06 Score=82.82 Aligned_cols=188 Identities=15% Similarity=0.069 Sum_probs=133.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH--H
Q 037695 441 FPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNV---VNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT--V 515 (701)
Q Consensus 441 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~--~ 515 (701)
......+..+...+...|+++.|...++.+.... +.+. ..+..+..++...|++++|+..++++.+....... .
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 3456678888888999999999999999998763 2222 46677889999999999999999999874321111 2
Q ss_pred HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHH
Q 037695 516 TYTTIIDALSKN--------GRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQ 587 (701)
Q Consensus 516 ~~~~li~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 587 (701)
++..+..++... |++++|.+.|+.+.... +-+...+..+..... .... . ......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~~-------~-----~~~~~~ 171 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRNR-------L-----AGKELY 171 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHHH-------H-----HHHHHH
Confidence 455566666654 78899999999998863 223333322221111 0000 0 011235
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 037695 588 VIENLCSFGYLEEAGKILGKVLRTASK--ADASTCHVLVESYLNKGIPLLAYKVACRMFNR 646 (701)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (701)
++..+.+.|++.+|+..++++++..+. .....+..++.++.+.|++++|..+++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 677788999999999999999886432 23567889999999999999999998888763
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.71 E-value=6.1e-07 Score=77.49 Aligned_cols=93 Identities=12% Similarity=-0.051 Sum_probs=61.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695 552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNK 630 (701)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 630 (701)
+..+...+...|++++|...|+.++...|. ...+..++.++...|++++|+..|+++++..+ .++..+..++.++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p-~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA-SHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHc
Confidence 444556666667777777777766666665 55666666666666777777777766666543 3566666666666666
Q ss_pred CChhhHHHHHHHHHh
Q 037695 631 GIPLLAYKVACRMFN 645 (701)
Q Consensus 631 g~~~~A~~~~~~~~~ 645 (701)
|++++|+..++++++
T Consensus 106 g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 106 GEPGLAREAFQTAIK 120 (144)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666666
No 119
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.70 E-value=2.6e-06 Score=92.23 Aligned_cols=133 Identities=11% Similarity=0.024 Sum_probs=109.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHH
Q 037695 511 DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVI 589 (701)
Q Consensus 511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~ 589 (701)
..+...+..|..+..+.|++++|..+++...+.. |-+......++..+.+.+++++|+..+++.+...|+ ......++
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 4567788888888888999999999998888852 334556677788888889999999999999888888 67778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 590 ENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
.++...|++++|..+|++++..+ +-+..++.+++..+.+.|+.++|...|+++.+
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888999999999999988733 33578888888888889999999999988887
No 120
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.69 E-value=4e-06 Score=76.60 Aligned_cols=117 Identities=9% Similarity=0.095 Sum_probs=83.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHH-HhcCC--HHHHH
Q 037695 527 NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENL-CSFGY--LEEAG 602 (701)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~ 602 (701)
.++.+++...++..+... +.+...|..+...|...|++++|...|+++....|+ ...+..++.++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 455566666666666654 556777777777777777777777777777777776 56666677654 45565 47777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 603 KILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
++++++++..+. +...+..++..+.+.|++++|+..++++++
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 777777776544 666777777777777777777777777777
No 121
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=1.2e-05 Score=72.28 Aligned_cols=186 Identities=18% Similarity=0.122 Sum_probs=127.5
Q ss_pred cCCHHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037695 457 EGKMDGAKKFMQECLNK---G-CAVNVV-NFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVE 531 (701)
Q Consensus 457 ~g~~~~a~~~~~~~~~~---~-~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 531 (701)
..+.++..+++..+... | ..++.. .|..++-+....|+.+.|...++++...- +.+...-..-.--+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 45677788877777542 3 334433 34556666677788888888888877642 222222222222345678888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 532 EATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLR 610 (701)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 610 (701)
+|+++|+.+++.+ |.|..++-.=+...-..|+.-+|++-+...++..+. ..+|..+...|...|++++|.-.+++++-
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 8888888888775 556666666565666677777888888777777665 78888888888888888888888888876
Q ss_pred cCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHHHh
Q 037695 611 TASKADASTCHVLVESYLNKG---IPLLAYKVACRMFN 645 (701)
Q Consensus 611 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 645 (701)
.. +.++..+..++..+...| +.+.|.++|++.++
T Consensus 183 ~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 183 IQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred cC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55 346667777777766655 56678888888888
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.63 E-value=1.5e-06 Score=74.79 Aligned_cols=115 Identities=16% Similarity=0.004 Sum_probs=72.3
Q ss_pred HHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 037695 571 LLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI 649 (701)
Q Consensus 571 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 649 (701)
.+++++...|. ......++..+...|++++|...++.+...+ +.++..+..++..+...|++++|...++++.+.+..
T Consensus 5 ~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 5 TLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 44555555555 3445556666666677777777776666654 235666666667777777777777777766663222
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695 650 PDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK 687 (701)
Q Consensus 650 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 687 (701)
+...+..++.++...|++++|..+++++++..+..+.
T Consensus 84 -~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 -DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred -ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 3455666666777777777777777777776665444
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.62 E-value=3.1e-05 Score=85.35 Aligned_cols=223 Identities=15% Similarity=0.099 Sum_probs=174.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 037695 406 TPNAITYSVVMHGLRREGKLSEACDVVREMVKK-GFFPT---PVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVN 481 (701)
Q Consensus 406 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 481 (701)
+-+...|-..|....+.++.++|.++.++++.. ++.-. ...|.++++.-..-|.-+...++|+++.+.. . ....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHHH
Confidence 345567888888888899999999999888765 11111 2356777777777788888999999987752 2 3456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHH
Q 037695 482 FTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPT---VVTYRTVIHR 558 (701)
Q Consensus 482 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~ 558 (701)
|..|...|.+.+++++|.++|+.|.+. +......|...+..+.+..+-+.|..++.+.++. -|. .......+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHH
Confidence 788999999999999999999999875 3456788999999999999999999999999874 343 3344555666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCh
Q 037695 559 YCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADA--STCHVLVESYLNKGIP 633 (701)
Q Consensus 559 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~ 633 (701)
-.+.|+.+.+..+|+..+..+|. ...|+.+++.-.++|+.+.+..+|++++..++.|.. ..|...+..=-+.|+-
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 77899999999999999999998 789999999999999999999999999998876654 3344444433444543
No 124
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=1.3e-05 Score=72.91 Aligned_cols=156 Identities=18% Similarity=0.139 Sum_probs=101.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037695 483 TSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQV 562 (701)
Q Consensus 483 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 562 (701)
..+-..+...|+-+.+..+....... ...|......++....+.|++..|...+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44555566666666666666654332 12333444556666677777777777777776653 66677777777777777
Q ss_pred CCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 037695 563 GRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVAC 641 (701)
Q Consensus 563 g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (701)
|+++.|..-|.+..+..|. +.+++.++..|.-.|+.+.|..++......+ .-|..+-..|.......|++.+|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 7777777777777777666 5666777777777777777777777765543 3356666666667777777777766654
No 125
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.61 E-value=1.4e-06 Score=75.24 Aligned_cols=113 Identities=10% Similarity=-0.062 Sum_probs=57.8
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 037695 571 LLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP 650 (701)
Q Consensus 571 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 650 (701)
++++.++.+|.. +..++..+...|++++|...|+.++...+ .+...|..++.++...|++++|+..|+++.. +.|
T Consensus 15 ~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p 89 (144)
T PRK15359 15 ILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDA 89 (144)
T ss_pred HHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCC
Confidence 444444444432 33344555555555555555555555432 2455555555555555555555555555555 223
Q ss_pred -CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 037695 651 -DLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKS 688 (701)
Q Consensus 651 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 688 (701)
+...+..++.++.+.|++++|+..|.++++..|..+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~ 128 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASW 128 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 23455555555555555555555555555555544433
No 126
>PF12854 PPR_1: PPR repeat
Probab=98.60 E-value=7.3e-08 Score=58.86 Aligned_cols=32 Identities=53% Similarity=1.035 Sum_probs=21.0
Q ss_pred CCCCChHHHHHHHHHHHhcCChhHHHHHHHHc
Q 037695 241 GITPNVLTYNCLIKGYCDLHRIKDAIKLIDEM 272 (701)
Q Consensus 241 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 272 (701)
|+.||..||+.||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666665
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.59 E-value=1.5e-05 Score=72.52 Aligned_cols=157 Identities=17% Similarity=0.119 Sum_probs=88.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037695 448 NLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN 527 (701)
Q Consensus 448 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 527 (701)
..+-..+...|+-+....+....... .+.+....+.++....+.|++..|...|++..... ++|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 44444555555555555555543332 23344445555666666666666666666665432 45556666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 528 GRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILG 606 (701)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (701)
|+++.|..-|.+..+.. +-++..++.+...+.-.|+++.|..++.......+. ..+-..++......|++.+|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 66666666666666542 233445555655666666666666666666554442 4455556666666666666666654
Q ss_pred H
Q 037695 607 K 607 (701)
Q Consensus 607 ~ 607 (701)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
No 128
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=0.0001 Score=66.48 Aligned_cols=190 Identities=17% Similarity=0.151 Sum_probs=148.5
Q ss_pred hcCCHHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 037695 421 REGKLSEACDVVREMVKK---G-FFPTPV-EINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDL 495 (701)
Q Consensus 421 ~~g~~~~A~~~~~~m~~~---~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 495 (701)
...+.++..+++.+++.. | ..++.. .|..++-+....|+.+-|...++.+... ++-+..+-..-...+-..|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence 356789999999988753 4 445544 4566777778899999999999998877 344444433333445668999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 496 EEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKM 575 (701)
Q Consensus 496 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 575 (701)
++|+++++.+.+.. +-|..++..=+-..-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999998865 556677776666777788888999988888886 6789999999999999999999999999999
Q ss_pred HhcCCCh-hHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCC
Q 037695 576 LSKQKCR-TAYNQVIENLCSF---GYLEEAGKILGKVLRTAS 613 (701)
Q Consensus 576 ~~~~p~~-~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~ 613 (701)
+-.+|.. ..+..++..+... .+++.|.++|.++++..+
T Consensus 181 ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 181 LLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 9999984 4455677766544 467889999999988654
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.52 E-value=4.6e-05 Score=82.76 Aligned_cols=145 Identities=13% Similarity=0.141 Sum_probs=122.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 037695 475 CAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPD-TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYR 553 (701)
Q Consensus 475 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 553 (701)
.+.++..+..|.....+.|.+++|..+++...+ +.|+ ......++.++.+.+++++|...+++..... +-+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 455788888899999999999999999999988 4565 4567778889999999999999999999865 55677788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695 554 TVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVL 623 (701)
Q Consensus 554 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 623 (701)
.+..++.+.|++++|..+|+++...+|+ ..++..++..+...|+.++|...|+++++.. .+....|+.+
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~ 228 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRR 228 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHH
Confidence 8889999999999999999999988877 7889999999999999999999999998864 3344444443
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.49 E-value=6e-06 Score=70.99 Aligned_cols=115 Identities=15% Similarity=0.084 Sum_probs=80.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 536 LMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK 614 (701)
Q Consensus 536 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 614 (701)
.++++.... +.+......+...+...|++++|.+.++.+...+|. ...+..++..+...|++++|..+++++++.. +
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 344455432 223445566667777788888888888887777765 6677777888888888888888888877765 3
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhh
Q 037695 615 ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKL 654 (701)
Q Consensus 615 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 654 (701)
.+...+..++..|...|++++|+..+++.++ ..|+...
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~ 120 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIE--ICGENPE 120 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hccccch
Confidence 3566777777788888888888888888877 4454433
No 131
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=2e-07 Score=56.91 Aligned_cols=32 Identities=44% Similarity=1.057 Sum_probs=16.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 474 GCAVNVVNFTSLIRGFCQKGDLEEALSLLDDM 505 (701)
Q Consensus 474 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~ 505 (701)
|+.||..+||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
No 132
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.48 E-value=0.0034 Score=67.03 Aligned_cols=190 Identities=12% Similarity=0.056 Sum_probs=127.8
Q ss_pred HhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 037695 115 LRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRN 194 (701)
Q Consensus 115 l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 194 (701)
+-+.|..+.|+.+.+-..... +.|..+...+-.+|...++.++|..+|++..... |+......+..+|.|.+++.+
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHHHHHHHHHHHHHHHH
Confidence 345789999998877443322 4588899999999999999999999999998754 778888889999999998876
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----------CHhHHHHHHHHHHhCC-CCCChHHHHHHHHHHHhcCChh
Q 037695 195 AMYVLSMMQKAAVAPNLLICNTAIHVLVVGN----------KLAKALRFLERMQLAG-ITPNVLTYNCLIKGYCDLHRIK 263 (701)
Q Consensus 195 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g----------~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~g~~~ 263 (701)
-.++--++.+. .+.+++.+-++++.+...- -..-|...++.+.+.+ .--+..-...-...+-..|.++
T Consensus 129 qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ 207 (932)
T KOG2053|consen 129 QQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQ 207 (932)
T ss_pred HHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHH
Confidence 55444444332 2455666666666665431 1334566677766543 1112222222234556788999
Q ss_pred HHHHHHH-HchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037695 264 DAIKLID-EMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVN 309 (701)
Q Consensus 264 ~A~~~~~-~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 309 (701)
+|.+++. ...+.-..-+...-+.-+..+...+++.+..++..++..
T Consensus 208 eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 208 EALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 9999994 333332333455555667778888888888877777765
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=5e-05 Score=75.16 Aligned_cols=140 Identities=18% Similarity=0.181 Sum_probs=102.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHH
Q 037695 523 ALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEA 601 (701)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 601 (701)
.+...|.+++|...++.++.. .|-|+..+......+.+.++.++|.+.+++++...|. ....-.++.+|.+.|++.+|
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 345667788888888887765 3455666666677788888888888888888888887 55666778888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 602 GKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
+.+++...... +-|+..|..|..+|...|+..+|.. ..+..|.-.|++++|+..+..+.++
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~------------------A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALL------------------ARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHH------------------HHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 88888877755 4478888888888888887665543 2344566677888888888777776
Q ss_pred C
Q 037695 682 G 682 (701)
Q Consensus 682 ~ 682 (701)
.
T Consensus 455 ~ 455 (484)
T COG4783 455 V 455 (484)
T ss_pred c
Confidence 6
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.44 E-value=1.1e-05 Score=70.11 Aligned_cols=125 Identities=16% Similarity=0.125 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHH
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR----TAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD--ASTCHVLV 624 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 624 (701)
.|..++..+ ..++...+...++.+...+|.. .+.-.++..+...|++++|...|+.++.....+. ......|+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 3677777877888888777763 2334566777788888888888888887653332 23445567
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 625 ESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRF 678 (701)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (701)
..+...|++++|+..++...... .....+...+.+|...|++++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 78888888888888886643322 23356667788888888888888888765
No 135
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=0.00031 Score=63.99 Aligned_cols=97 Identities=22% Similarity=0.221 Sum_probs=44.9
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037695 489 FCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK----NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGR 564 (701)
Q Consensus 489 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 564 (701)
+.+..+++-|.+.++.|.+ --+..|.+-|..++.+ .+.+.+|.-+|++|.++ .+|++.+.+..+.++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 3344445555555555543 1233344444443332 23345555555555443 34555555555555555555
Q ss_pred HHHHHHHHHHHHhcCCC-hhHHHHHH
Q 037695 565 VEDLLKLLEKMLSKQKC-RTAYNQVI 589 (701)
Q Consensus 565 ~~~A~~~~~~~~~~~p~-~~~~~~l~ 589 (701)
+++|..+++.++.++++ +.++..++
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nli 248 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLI 248 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 55555555555554443 33333333
No 136
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.40 E-value=3.8e-05 Score=84.10 Aligned_cols=130 Identities=14% Similarity=0.130 Sum_probs=73.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------
Q 037695 441 FPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT------ 514 (701)
Q Consensus 441 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~------ 514 (701)
+.+...+..|+..+...+++++|..+.+...+. .+-....|-.+...+.+.++..++..+ .+... +..+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~-~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~ve 103 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE-HKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIVE 103 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHHH
Confidence 345667889999999999999999999977775 232344444444577777877776666 33321 11111
Q ss_pred -------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 515 -------------VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKML 576 (701)
Q Consensus 515 -------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 576 (701)
..+..+..+|-+.|+.++|..+|+++++.. +-|+.+.+.++..|... ++++|.+++.+++
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 223334444444455555555555554443 33444444444444444 4555544444444
No 137
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.34 E-value=5.3e-06 Score=76.81 Aligned_cols=105 Identities=16% Similarity=0.061 Sum_probs=67.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCH
Q 037695 590 ENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSERLILEGKS 668 (701)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 668 (701)
.-+.+.+++.+|+..|.++++..+. |++.|..-..+|.+.|.++.|++-.+.++. +.|.. ..|..|+.+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 3445566666666666666665533 555566666666666666666666666666 55544 6666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCchHHHHhhhhh
Q 037695 669 EEADTLMLRFVERGHIQPKSEEHLQRQRV 697 (701)
Q Consensus 669 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 697 (701)
++|++.|+++++..|..++-..+|+..+.
T Consensus 166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~ 194 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDNESYKSNLKIAEQ 194 (304)
T ss_pred HHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 66666666666666666666666665443
No 138
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.32 E-value=0.00025 Score=77.92 Aligned_cols=220 Identities=7% Similarity=0.071 Sum_probs=147.2
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-----
Q 037695 406 TPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTP-VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNV----- 479 (701)
Q Consensus 406 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----- 479 (701)
+.+...+..|+..+...+++++|..+.+...+. .|+. ..|-.+...+...++...+..+ .+... .+.+.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~~~~~~~v 102 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--NLIDS-FSQNLKWAIV 102 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh-cccccchhHH
Confidence 345667889999999999999999999977776 3443 3444444477788888877777 44443 22333
Q ss_pred --------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037695 480 --------------VNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGL 545 (701)
Q Consensus 480 --------------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (701)
..+..+..+|-+.|+.++|..+|+++.+.. +-|....|.+...|... +.++|.+++.+.+..
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-- 178 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-- 178 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--
Confidence 456667788889999999999999999876 55788899999999988 999999999887763
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695 546 VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLV 624 (701)
Q Consensus 546 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 624 (701)
+...+++..+.+++.++....|. ...+..+.......- +..--..++.-+.
T Consensus 179 -------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~---------------~~~~~~~~~~~l~ 230 (906)
T PRK14720 179 -------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR---------------EFTRLVGLLEDLY 230 (906)
T ss_pred -------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh---------------ccchhHHHHHHHH
Confidence 55566788888888888877765 222222222111110 1111222333344
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 037695 625 ESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLI 663 (701)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 663 (701)
..|.+.+++++++.+++.+++.... |......++.+|.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 4555556677777777777663333 3344555555554
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=0.00012 Score=72.52 Aligned_cols=179 Identities=17% Similarity=0.072 Sum_probs=130.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChh-HHHHHH
Q 037695 511 DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRT-AYNQVI 589 (701)
Q Consensus 511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~ 589 (701)
.|+...+...+.+......-..+..++.+-.+ +--.....-..-.+...|++++|+..++.++...|+.. .+...+
T Consensus 271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~---~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~ 347 (484)
T COG4783 271 SPDFQLARARIRAKYEALPNQQAADLLAKRSK---RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAG 347 (484)
T ss_pred CccHHHHHHHHHHHhccccccchHHHHHHHhC---ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence 34555555555544333332233333222222 11222333344456678999999999999999999854 555678
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHH
Q 037695 590 ENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSE 669 (701)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 669 (701)
..+.+.|+.++|.+.+++++...+. .......++.+|.+.|++.+|+.+++........ |+..|..++.+|...|+..
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 348 DILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchH
Confidence 8999999999999999999987543 3777889999999999999999999999885554 6789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCchHHHHhh
Q 037695 670 EADTLMLRFVERGHIQPKSEEHLQR 694 (701)
Q Consensus 670 ~A~~~~~~~~~~~~~~~~~~~~l~~ 694 (701)
+|...+-+..............+.+
T Consensus 426 ~a~~A~AE~~~~~G~~~~A~~~l~~ 450 (484)
T COG4783 426 EALLARAEGYALAGRLEQAIIFLMR 450 (484)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999998887776655555555444
No 140
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=8.4e-05 Score=71.72 Aligned_cols=288 Identities=13% Similarity=0.013 Sum_probs=177.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695 380 FLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGK 459 (701)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 459 (701)
.-..+.+...+..|+..+...++.. +.+..-|..-...+...+++++|..-.+.-++.. +-........-+++...++
T Consensus 55 ~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~ 132 (486)
T KOG0550|consen 55 EGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSD 132 (486)
T ss_pred hcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHH
Confidence 3455666666777777777666653 3334445555555555666666655444433321 1112233333444444444
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHH-HHHHhcCCHHHHHHHH
Q 037695 460 MDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK-DPDTVTYTTII-DALSKNGRVEEATELM 537 (701)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li-~~~~~~g~~~~A~~~~ 537 (701)
..+|...++ +...+ ....|+..++....... +|.-.+|..+- .++...|++++|...-
T Consensus 133 ~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea 192 (486)
T KOG0550|consen 133 LIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA 192 (486)
T ss_pred HHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence 444444443 00000 12223333333332221 24445555553 4566789999999888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChh-------------HHHHHHHHHHhcCCHHHHHHH
Q 037695 538 MKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRT-------------AYNQVIENLCSFGYLEEAGKI 604 (701)
Q Consensus 538 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-------------~~~~l~~~~~~~g~~~~A~~~ 604 (701)
...++.. ..+......-..++.-.++.+.|...|++.+..+|+.. .+..=+.-..+.|++..|.+.
T Consensus 193 ~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 193 IDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred HHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 7777653 22333322223345567889999999999999988732 122234566788999999999
Q ss_pred HHHHHHcCC---CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 605 LGKVLRTAS---KADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSERLILEGKSEEADTLMLRFVE 680 (701)
Q Consensus 605 ~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (701)
|.+++...+ .++...|........+.|+..+|+.--.++++ +.|.. ..+..-+.++.-.++|++|++.|+++.+
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999987754 45556677777788899999999999998888 66553 6667777888889999999999999998
Q ss_pred cCCCCCchHHHHh
Q 037695 681 RGHIQPKSEEHLQ 693 (701)
Q Consensus 681 ~~~~~~~~~~~l~ 693 (701)
.... +.....|+
T Consensus 350 ~~~s-~e~r~~l~ 361 (486)
T KOG0550|consen 350 LEKD-CEIRRTLR 361 (486)
T ss_pred hccc-cchHHHHH
Confidence 7754 44444443
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.001 Score=60.71 Aligned_cols=254 Identities=15% Similarity=0.107 Sum_probs=150.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037695 382 NGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMD 461 (701)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~ 461 (701)
+-+.-.|.+..++..-....... -+...-.-+-++|...|.+..... +..... .|....+..+.......++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 34444577777766554443321 233333345566666666544332 222221 333344444444444444444
Q ss_pred HHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 462 GAK-KFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKM 540 (701)
Q Consensus 462 ~a~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 540 (701)
.-. .+.+.+.......+......-...|+..|++++|++...... +......=+..+.+..+++-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 334444444333333334444456788888888888877631 2222233344556777888888888888
Q ss_pred HhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhc-CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695 541 LSKGLVPTVVTYRTVIHRYCQ----VGRVEDLLKLLEKMLSK-QKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA 615 (701)
Q Consensus 541 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 615 (701)
.+- .+..|.+.|..++.+ .+++.+|.-+|+++..+ .|++.+.+..+.++...|++++|..+++.++.....
T Consensus 164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~- 239 (299)
T KOG3081|consen 164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK- 239 (299)
T ss_pred Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-
Confidence 863 256667767766654 45688888888888874 556777888888888888888888888888886644
Q ss_pred CHHHHHHHHHHHHhcCChhhHH-HHHHHHHhCCCCCCHh
Q 037695 616 DASTCHVLVESYLNKGIPLLAY-KVACRMFNRNLIPDLK 653 (701)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~ 653 (701)
++.+...++-.-...|...++. +.+.++.. ..|...
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~--~~p~h~ 276 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKL--SHPEHP 276 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh--cCCcch
Confidence 6777777777666667554433 44555555 444443
No 142
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.26 E-value=3.6e-05 Score=77.11 Aligned_cols=116 Identities=24% Similarity=0.203 Sum_probs=52.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHH
Q 037695 521 IDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLE 599 (701)
Q Consensus 521 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 599 (701)
+..+...++++.|..+|+++.+.. |+. ...++..+...++-.+|++++++.++..|. ...+...+..|.+.++++
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 333344455555555555555432 322 223444444444455555555555544443 333344444444445555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 037695 600 EAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVAC 641 (701)
Q Consensus 600 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (701)
.|..+.+++.+.. +.+..+|..|+.+|...|+++.|+..+.
T Consensus 252 lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 252 LALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 5555555444432 1133344444445555555544444433
No 143
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.26 E-value=0.0078 Score=62.31 Aligned_cols=373 Identities=14% Similarity=0.094 Sum_probs=177.1
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHH
Q 037695 243 TPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEE 322 (701)
Q Consensus 243 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~ 322 (701)
.|.+..|..|.......-.++.|...|-+.... |.+.....|-....+.-+- ..+..--|.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~-------------aei~~~~g~fee 752 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQR-------------AEISAFYGEFEE 752 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHh-------------HhHhhhhcchhH
Confidence 466677777766666656666666655444321 1111111111111111100 111111256666
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 323 AKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKP----NTVSYTAFLNGLCHNGKSLEAREMIN 398 (701)
Q Consensus 323 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~ 398 (701)
|.+++-+|-... ..|..+.+.|++-...++++.- |-.. -...|+.+...++....++.|.+.+.
T Consensus 753 aek~yld~drrD---------LAielr~klgDwfrV~qL~r~g---~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~ 820 (1189)
T KOG2041|consen 753 AEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNG---GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYS 820 (1189)
T ss_pred hhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHcc---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665554431 2355566677776665555431 1111 13456677777777777777777765
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695 399 TSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVN 478 (701)
Q Consensus 399 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 478 (701)
.-... ...+.++.+...+++...+.+. ++.+....-.+.+++...|.-++|.+.|-+... |
T Consensus 821 ~~~~~---------e~~~ecly~le~f~~LE~la~~-----Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p- 881 (1189)
T KOG2041|consen 821 YCGDT---------ENQIECLYRLELFGELEVLART-----LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P- 881 (1189)
T ss_pred hccch---------HhHHHHHHHHHhhhhHHHHHHh-----cCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-
Confidence 43221 1244555555555554443333 244555666677777777777777766543321 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--------------HHHHHHHhcCCHHHHHHHHHHHHhC-
Q 037695 479 VVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYT--------------TIIDALSKNGRVEEATELMMKMLSK- 543 (701)
Q Consensus 479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~--------------~li~~~~~~g~~~~A~~~~~~m~~~- 543 (701)
.+.+..|...++|.+|.++-+... -|.+.|.- -.|..+.+.|+.-+|.+++.+|.+.
T Consensus 882 ----kaAv~tCv~LnQW~~avelaq~~~----l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e 953 (1189)
T KOG2041|consen 882 ----KAAVHTCVELNQWGEAVELAQRFQ----LPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAERE 953 (1189)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHH
Confidence 134556666777777777766552 23333321 1223344555555555666555542
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037695 544 ---GLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTC 620 (701)
Q Consensus 544 ---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 620 (701)
+.+|-..--..++.++. ..+.-++++-.++....+....+.. +...|-..++-++.+..-+ -.....|
T Consensus 954 ~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~~g~~~dat~-----lles~~l~~~~ri~~n~Wr---gAEAyHF 1024 (1189)
T KOG2041|consen 954 QEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDKHGFLEDATD-----LLESGLLAEQSRILENTWR---GAEAYHF 1024 (1189)
T ss_pred hhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhcCcchhhhh-----hhhhhhhhhHHHHHHhhhh---hHHHHHH
Confidence 32221111111111111 1122222222222222221111111 1112222233333322211 1133445
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHh-CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 621 HVLVESYLNKGIPLLAYKVACRMFN-RNLIPDLKLCKKVSERLILEGKSEEADTLMLRFV 679 (701)
Q Consensus 621 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (701)
..|++-.+..|..+.|++..-.+.+ .++.|-..+|..++-+-+....+--.-+.|-++.
T Consensus 1025 milAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe 1084 (1189)
T KOG2041|consen 1025 MILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLE 1084 (1189)
T ss_pred HHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence 5566667777888888887766655 3566777788777665554444444444443333
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.21 E-value=0.00012 Score=63.57 Aligned_cols=123 Identities=18% Similarity=0.143 Sum_probs=73.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----hHHHHHH
Q 037695 517 YTTIIDALSKNGRVEEATELMMKMLSKGLVPT---VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR----TAYNQVI 589 (701)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~ 589 (701)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+....|++ .+...++
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33334333 3666666766677766652 222 2233344566667777777777777777665442 2334566
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 037695 590 ENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRM 643 (701)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 643 (701)
.++...|++++|+..++.... ....+..+...+..|...|++++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 667777777777777755322 2334455566677777777777777777654
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.21 E-value=4e-05 Score=64.08 Aligned_cols=104 Identities=17% Similarity=0.090 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--CHhhHHHHH
Q 037695 584 AYNQVIENLCSFGYLEEAGKILGKVLRTASK--ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP--DLKLCKKVS 659 (701)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~ 659 (701)
++..++..+.+.|++++|...+.++++..+. .....+..++.++.+.|+++.|+..++.+....... ...++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445555566666666666666666654321 113345556666777777777777777766632221 134556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695 660 ERLILEGKSEEADTLMLRFVERGHIQPK 687 (701)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 687 (701)
.++.+.|++++|..+++++++..|.++.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 6777777777777777777777654443
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.20 E-value=0.00016 Score=61.32 Aligned_cols=93 Identities=12% Similarity=-0.001 Sum_probs=56.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695 552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNK 630 (701)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 630 (701)
.-.+...+...|++++|.++|+.+...+|. ..-|..|+.++-..|++++|+..|..+....+ .|+..+-.++.++...
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 334444555666666666666666666665 44555666666666666666666666666553 3555566666666666
Q ss_pred CChhhHHHHHHHHHh
Q 037695 631 GIPLLAYKVACRMFN 645 (701)
Q Consensus 631 g~~~~A~~~~~~~~~ 645 (701)
|+.+.|.+.|+.++.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666665555
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.15 E-value=0.00013 Score=61.78 Aligned_cols=98 Identities=9% Similarity=-0.140 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 037695 584 AYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLI 663 (701)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 663 (701)
..-.++..+...|++++|..+|+-+....+. +..-|..|+-++-..|++.+|+..|.++...++. ++..+.+++.++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 3445566666777777777777777665533 5666677777777777777777777777774332 3466666777777
Q ss_pred hcCCHHHHHHHHHHHHHcCC
Q 037695 664 LEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 664 ~~g~~~~A~~~~~~~~~~~~ 683 (701)
..|+.+.|.+.|+.++..-.
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhc
Confidence 77777777777777776654
No 148
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.13 E-value=0.00015 Score=76.28 Aligned_cols=141 Identities=13% Similarity=0.005 Sum_probs=80.7
Q ss_pred CCCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHHHHHH
Q 037695 545 LVPTVVTYRTVIHRYCQ--V---GRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF--------GYLEEAGKILGKVLR 610 (701)
Q Consensus 545 ~~p~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~ 610 (701)
.+.+...|...+++... . +....|..+|+++++..|+ ..++..++.++... .++..+.+...++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 34555666655555332 1 2255666666666666666 44444444333221 123344444444333
Q ss_pred cC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695 611 TA-SKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK 687 (701)
Q Consensus 611 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 687 (701)
.. ...++..+..++-.+...|++++|...+++++. +.|+...|..++..+...|+.++|.+.|+++....|..|+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 21 233455666666666666777777777777777 4456666777777777777777777777777777765553
No 149
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.11 E-value=0.012 Score=58.01 Aligned_cols=456 Identities=13% Similarity=0.092 Sum_probs=212.5
Q ss_pred HHHhcCCChHHHHHHHHHHhhcCCCCCC----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHH--H
Q 037695 113 AVLRSQADERVALQFFYWADRQWRYRHD----PIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVA--Y 186 (701)
Q Consensus 113 ~~l~~~~~~~~Al~~f~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~--~ 186 (701)
-+|+.+++...|-.+|..+-...-..|. ...-+.++++|... +.+.....+..+.+.. | ...|-.+..+ +
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF--G-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc--C-CchHHHHHHHHHH
Confidence 3567788888888888876544321211 12345667777654 4555555555554432 2 2223333332 3
Q ss_pred HHcCChhHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHccCCHhHHHHHHHHHHhC----CCCCChHH
Q 037695 187 SRAGKLRNAMYVLSMMQKA--AVAP------------NLLICNTAIHVLVVGNKLAKALRFLERMQLA----GITPNVLT 248 (701)
Q Consensus 187 ~~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~~ 248 (701)
-+.+.+++|.+.+..-... +..+ |...-+..+..+...|++.++..++++|... .+..+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 3677888888777655432 2111 1222234445555666666666655555432 22355556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHchhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHH
Q 037695 249 YNCLIKGYCDLHRIKDAIKLIDEMPLK---GCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKE 325 (701)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~ 325 (701)
|+.++-.+.+. .|-++++. .+-|| |.-++-.|.+.=+.
T Consensus 170 yd~~vlmlsrS--------YfLEl~e~~s~dl~pd---yYemilfY~kki~~---------------------------- 210 (549)
T PF07079_consen 170 YDRAVLMLSRS--------YFLELKESMSSDLYPD---YYEMILFYLKKIHA---------------------------- 210 (549)
T ss_pred HHHHHHHHhHH--------HHHHHHHhcccccChH---HHHHHHHHHHHHHH----------------------------
Confidence 66554444332 22222111 11121 22222222221000
Q ss_pred HHHHHHHcCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695 326 LVNQMSQMGCIPDVVTYTAVVNGFCRVG--ELDQAKKMLQQMYHHGCKPNTV-SYTAFLNGLCHNGKSLEAREMINTSEE 402 (701)
Q Consensus 326 ~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~ 402 (701)
++.-.=..+.|.......++....-.. +..--.+++....+.-+.|+.. ....|+..+.+ +.+++..+-+.+..
T Consensus 211 -~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~ 287 (549)
T PF07079_consen 211 -FDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIAS 287 (549)
T ss_pred -HhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHH
Confidence 000000012334444444444333221 2222333333334444455432 22334444433 44444444443332
Q ss_pred CCC----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHH-hcC---CHHHHHHHH
Q 037695 403 EWW----TPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEI-------NLLIQSLC-REG---KMDGAKKFM 467 (701)
Q Consensus 403 ~~~----~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~-------~~li~~~~-~~g---~~~~a~~~~ 467 (701)
..+ ..-..+|..++....+.++...|...+.-+.-. .|+...- ..+.+..+ .-. +...-..+|
T Consensus 288 ~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lw 365 (549)
T PF07079_consen 288 SKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLW 365 (549)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 211 112346777888888888888888877766554 2322211 11111222 111 112222333
Q ss_pred HHHHHcCCCCCHHHHHHHH---HHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHh---cCCHHHHHHH
Q 037695 468 QECLNKGCAVNVVNFTSLI---RGFCQKGD-LEEALSLLDDMYLCKKDPDTVTYTTI----IDALSK---NGRVEEATEL 536 (701)
Q Consensus 468 ~~~~~~~~~~~~~~~~~ll---~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~l----i~~~~~---~g~~~~A~~~ 536 (701)
.......+. ......-|+ .-+-+.|. -++|+++++.+.+.. +-|...-|.+ =.+|.+ ...+..-..+
T Consensus 366 e~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkL 443 (549)
T PF07079_consen 366 EEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKL 443 (549)
T ss_pred HHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 333332111 111112222 22334444 778888888887632 2333332222 223322 2233444444
Q ss_pred HHHHHhCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 537 MMKMLSKGLVPT----VVTYRTVIHR--YCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLR 610 (701)
Q Consensus 537 ~~~m~~~~~~p~----~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 610 (701)
-+.+.+.|++|- ...-+.|.++ +...|++.++.-.-.=..+..|++.++.-++-++....++++|..++..+
T Consensus 444 e~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-- 521 (549)
T PF07079_consen 444 EDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-- 521 (549)
T ss_pred HHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC--
Confidence 445555676663 3334444433 34567777776555555555777777777777777777777777777764
Q ss_pred cCCCCCHHHHHHH
Q 037695 611 TASKADASTCHVL 623 (701)
Q Consensus 611 ~~~~~~~~~~~~l 623 (701)
+|+..++++=
T Consensus 522 ---P~n~~~~dsk 531 (549)
T PF07079_consen 522 ---PPNERMRDSK 531 (549)
T ss_pred ---CCchhhHHHH
Confidence 5566555443
No 150
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=0.00026 Score=71.14 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=89.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037695 482 FTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ 561 (701)
Q Consensus 482 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 561 (701)
..+|+..+...++++.|+.+|+++.+.. |+. ...+++.+...++-.+|++++++.++.. +-+...+...+..|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3445556666778888888888887643 443 3446777777777788888888877653 4466666767777788
Q ss_pred cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 562 VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKV 608 (701)
Q Consensus 562 ~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 608 (701)
.++++.|+.+.+++....|+ ..+|..|+.+|...|+++.|+..+..+
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 88888888888888888887 668888888888888888888777765
No 151
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.98 E-value=0.0074 Score=58.79 Aligned_cols=155 Identities=15% Similarity=0.105 Sum_probs=95.3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-------------HH
Q 037695 454 LCREGKMDGAKKFMQECLNKGCAVNVVNFTSLI--RGFCQKGDLEEALSLLDDMYLCKKDPDTVT-------------YT 518 (701)
Q Consensus 454 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll--~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~-------------~~ 518 (701)
+.-.|++++|..+--..++.. ....+..++ .++...++.+.|...|++.+.. .|+... +.
T Consensus 179 l~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHH
Confidence 345666666666655555542 111222222 2334456667777777666553 333222 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHh
Q 037695 519 TIIDALSKNGRVEEATELMMKMLSK---GLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCS 594 (701)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~ 594 (701)
.-..-..+.|++..|.+.|.+.+.. ++.|+...|.....+..+.|+..+|+.--+.+++.++. ..++..-+.++..
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~ 333 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA 333 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 1122345678888888888887764 34455666776777777888888888888888777765 4555555666667
Q ss_pred cCCHHHHHHHHHHHHHcCC
Q 037695 595 FGYLEEAGKILGKVLRTAS 613 (701)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~ 613 (701)
.+++++|.+-++++.+...
T Consensus 334 le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 334 LEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 7888888888888877643
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.97 E-value=0.00018 Score=60.02 Aligned_cols=95 Identities=17% Similarity=0.096 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA--DASTCHVLV 624 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 624 (701)
++..++..+.+.|++++|.+.|..+....|+ ..++..++.++.+.|++++|...++.++...+.. .+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4445555666666666666666666665554 2345556666666666666666666666543221 234555666
Q ss_pred HHHHhcCChhhHHHHHHHHHh
Q 037695 625 ESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~ 645 (701)
.++...|++++|...+.++.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHH
Confidence 666666777777777766666
No 153
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.00014 Score=67.64 Aligned_cols=87 Identities=26% Similarity=0.275 Sum_probs=54.0
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHH
Q 037695 524 LSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAG 602 (701)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 602 (701)
+.+.+++.+|+..|.+.+... +-|++-|+.-..+|++.|.++.|++-.+.++..+|. ..+|..|+.+|...|++++|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHH
Confidence 345566666666666666642 344555555666666666666666666666666665 556666666666666666666
Q ss_pred HHHHHHHHc
Q 037695 603 KILGKVLRT 611 (701)
Q Consensus 603 ~~~~~~~~~ 611 (701)
+.|+++++.
T Consensus 170 ~aykKaLel 178 (304)
T KOG0553|consen 170 EAYKKALEL 178 (304)
T ss_pred HHHHhhhcc
Confidence 666666654
No 154
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.95 E-value=0.00015 Score=73.28 Aligned_cols=97 Identities=10% Similarity=-0.034 Sum_probs=84.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695 554 TVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI 632 (701)
Q Consensus 554 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 632 (701)
.....+...|++++|++.|++++...|. ...+..++.+|...|++++|+..++++++..+ .+...|..++.+|...|+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCC
Confidence 3456677889999999999999999988 77888899999999999999999999998764 377888899999999999
Q ss_pred hhhHHHHHHHHHhCCCCCCHh
Q 037695 633 PLLAYKVACRMFNRNLIPDLK 653 (701)
Q Consensus 633 ~~~A~~~~~~~~~~~~~p~~~ 653 (701)
+++|+..++++++ +.|+..
T Consensus 86 ~~eA~~~~~~al~--l~P~~~ 104 (356)
T PLN03088 86 YQTAKAALEKGAS--LAPGDS 104 (356)
T ss_pred HHHHHHHHHHHHH--hCCCCH
Confidence 9999999999999 566543
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.95 E-value=2.6e-05 Score=60.25 Aligned_cols=81 Identities=22% Similarity=0.216 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHH
Q 037695 595 FGYLEEAGKILGKVLRTASK-ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEAD 672 (701)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 672 (701)
.|+++.|+.+++++++..+. ++...+..++.+|.+.|++++|+.++++ .+ ..|. ......++.++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 46777777777777776542 2445555577778888888888877776 33 2222 244445677788888888888
Q ss_pred HHHHHH
Q 037695 673 TLMLRF 678 (701)
Q Consensus 673 ~~~~~~ 678 (701)
+.|+++
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 877653
No 156
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.94 E-value=0.00024 Score=71.82 Aligned_cols=94 Identities=12% Similarity=0.048 Sum_probs=83.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCH
Q 037695 520 IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYL 598 (701)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 598 (701)
....+...|++++|+.+|.+++... +.+...|..+..+|.+.|++++|+..+++++...|. ..++..++.+|...|++
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 4556778899999999999999875 556888889999999999999999999999999987 77888999999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 037695 599 EEAGKILGKVLRTASK 614 (701)
Q Consensus 599 ~~A~~~~~~~~~~~~~ 614 (701)
++|+..|+++++..+.
T Consensus 87 ~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 87 QTAKAALEKGASLAPG 102 (356)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 9999999999987643
No 157
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.93 E-value=0.00017 Score=57.18 Aligned_cols=92 Identities=18% Similarity=0.077 Sum_probs=41.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 037695 588 VIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGK 667 (701)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 667 (701)
++..+...|++++|...++++++..+ .+...+..++..+...|++++|.+.+++..+.... +...+..++..+...|+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 83 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKLGK 83 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHHHh
Confidence 34444444444555544444444321 12234444444445555555555555554442211 12344444555555555
Q ss_pred HHHHHHHHHHHHHc
Q 037695 668 SEEADTLMLRFVER 681 (701)
Q Consensus 668 ~~~A~~~~~~~~~~ 681 (701)
+++|..++.++.+.
T Consensus 84 ~~~a~~~~~~~~~~ 97 (100)
T cd00189 84 YEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHcc
Confidence 55555555555443
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.91 E-value=0.0002 Score=56.77 Aligned_cols=94 Identities=20% Similarity=0.198 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN 629 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 629 (701)
++..+...+...|++++|..+++++.+..|. ...+..++.++...|++++|...++.++...+. +..++..++..+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHH
Confidence 3566778888999999999999999988877 567888999999999999999999999887533 55788889999999
Q ss_pred cCChhhHHHHHHHHHh
Q 037695 630 KGIPLLAYKVACRMFN 645 (701)
Q Consensus 630 ~g~~~~A~~~~~~~~~ 645 (701)
.|+++.|...+.+..+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 9999999999998877
No 159
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.89 E-value=0.0047 Score=53.17 Aligned_cols=134 Identities=13% Similarity=0.081 Sum_probs=99.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---hhHHH
Q 037695 510 KDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC---RTAYN 586 (701)
Q Consensus 510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~ 586 (701)
..|+...--.|..++...|++.+|...|++...--+..|......+.++....+++..|...+++..+.+|. +...-
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L 164 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL 164 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence 457777777788888888888888888888776545567777778888888888888888888888877765 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 587 QVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
.+++.|...|++.+|...|+.++..- |++..-......+.++|+..+|..-+..+.+
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 67788888888888888888887754 4444444456677788877777665555544
No 160
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.84 E-value=2.1e-05 Score=48.89 Aligned_cols=33 Identities=45% Similarity=0.860 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHchhCCCCCC
Q 037695 248 TYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPD 280 (701)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd 280 (701)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777776665
No 161
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.0012 Score=61.96 Aligned_cols=99 Identities=15% Similarity=0.086 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037695 546 VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF---GYLEEAGKILGKVLRTASKADASTCH 621 (701)
Q Consensus 546 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~ 621 (701)
|-|...|..|...|...|+++.|..-|.++.+..|+ +..+..++.++... ....++..+|++++...+ .|.....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHHH
Confidence 445555555555555555555555555555555444 44445555444422 224455555555555442 2444445
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHh
Q 037695 622 VLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
.|+..+...|++.+|...++.|++
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 555555555555555555555555
No 162
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.81 E-value=0.00039 Score=70.15 Aligned_cols=121 Identities=17% Similarity=0.246 Sum_probs=65.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037695 406 TPNAITYSVVMHGLRREGKLSEACDVVREMVKK--GFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFT 483 (701)
Q Consensus 406 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 483 (701)
+.+......+++.+....+++.+..++...... ....-+.|..++++.|.+.|..+.+..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 344455555555555555555555555555443 111222333455666666666666666665555556666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037695 484 SLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK 526 (701)
Q Consensus 484 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 526 (701)
.|++.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666555555444445555444444443
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.79 E-value=0.00067 Score=60.85 Aligned_cols=113 Identities=12% Similarity=-0.008 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695 549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLV 624 (701)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 624 (701)
...+..+...+...|++++|...|+++++..|+ ...+..++.++.+.|++++|...+.++++..+. +...+..++
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 344666666777778888888888777765443 245667777777777777777777777775432 455666667
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 625 ESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
.+|...|+...+...++.+.. .+++|.++++++.+.+|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhCc
Confidence 777776665554433333222 14566666666666554
No 164
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.78 E-value=0.001 Score=59.63 Aligned_cols=111 Identities=14% Similarity=0.017 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHH
Q 037695 514 TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPT--VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIE 590 (701)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~ 590 (701)
...+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++++...|. ...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 44577788888999999999999999987542222 467888899999999999999999999999887 677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 591 NLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 591 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
++...|+...+..-++.++. .+++|+++++++..
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~ 148 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIR 148 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHh
Confidence 99888887766655544432 14667777777766
No 165
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.77 E-value=5.9e-05 Score=58.27 Aligned_cols=79 Identities=23% Similarity=0.235 Sum_probs=40.6
Q ss_pred cCCHHHHHHHHHHHHhcCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 037695 562 VGRVEDLLKLLEKMLSKQKC---RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYK 638 (701)
Q Consensus 562 ~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 638 (701)
.|+++.|+.+++++.+..|. ...+..++.+|.+.|++++|..++++ .+.+. .+......++.+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666655552 22333456666666666666666655 22221 122333344556666666666666
Q ss_pred HHHH
Q 037695 639 VACR 642 (701)
Q Consensus 639 ~~~~ 642 (701)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 166
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.77 E-value=5e-05 Score=47.09 Aligned_cols=33 Identities=58% Similarity=0.915 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 037695 516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVPT 548 (701)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 548 (701)
+|+.+|.+|++.|++++|.++|.+|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 167
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.75 E-value=0.00013 Score=53.00 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=43.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695 623 LVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQ 685 (701)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 685 (701)
++..+...|++++|+..++++++.. |+ ...+..++.++...|++++|..+|+++++..|..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4566777777777777777777743 43 4677777777777888888888888777777654
No 168
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.73 E-value=5.5e-05 Score=46.54 Aligned_cols=32 Identities=31% Similarity=0.559 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037695 516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVP 547 (701)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 547 (701)
+|+.++.+|++.|+++.|..+|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
No 169
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.73 E-value=6e-05 Score=46.36 Aligned_cols=33 Identities=30% Similarity=0.526 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 037695 480 VNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDP 512 (701)
Q Consensus 480 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p 512 (701)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777888888888888888877777766
No 170
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.72 E-value=0.00017 Score=53.22 Aligned_cols=66 Identities=17% Similarity=0.085 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCC
Q 037695 616 DASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEG-KSEEADTLMLRFVERGH 683 (701)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 683 (701)
++.+|..++..+...|++++|+..|+++++ ..|+ ...+..++.++.+.| ++++|+..++++++..|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~--~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE--LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH--HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 455667777777777777777777777777 3443 366777777777777 57777777777776553
No 171
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=0.0019 Score=60.66 Aligned_cols=125 Identities=13% Similarity=0.106 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHH
Q 037695 566 EDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKG---IPLLAYKVAC 641 (701)
Q Consensus 566 ~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~ 641 (701)
+....-++.-+..+|+ ...|..|+..|...|+...|...|.++.+.. .+++..+..++.++..+. ...++..+++
T Consensus 139 ~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 139 EALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3344444555556666 6777777888888888888888887777765 336667767776644433 3446777777
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHH
Q 037695 642 RMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHL 692 (701)
Q Consensus 642 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 692 (701)
++++.+.. |......++..+...|++.+|...++.|.+..+-..+-...+
T Consensus 218 ~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 218 QALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 77773333 456666777777778888888888888877776554444333
No 172
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.69 E-value=0.0012 Score=63.07 Aligned_cols=95 Identities=12% Similarity=0.004 Sum_probs=52.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-C-CHhhHHHHHHHHHhcCCH
Q 037695 593 CSFGYLEEAGKILGKVLRTASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI-P-DLKLCKKVSERLILEGKS 668 (701)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~ 668 (701)
.+.|++++|+..|+.+++..+... +..+..++..|...|++++|+..|+++.+..+. | ....+..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 334555555555555555433211 234445566666666666666666666652221 1 124555566666677777
Q ss_pred HHHHHHHHHHHHcCCCCCc
Q 037695 669 EEADTLMLRFVERGHIQPK 687 (701)
Q Consensus 669 ~~A~~~~~~~~~~~~~~~~ 687 (701)
++|..+|+++++..|.++.
T Consensus 234 ~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 234 AKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred HHHHHHHHHHHHHCcCCHH
Confidence 7777777777776665443
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.67 E-value=0.001 Score=59.43 Aligned_cols=78 Identities=14% Similarity=0.053 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHH
Q 037695 516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVP--TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENL 592 (701)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~ 592 (701)
.|..+...+...|++++|...|++.......| ...++..+...+...|++++|+..+++++...|. ...+..++..+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34444455555566666666666555432111 1234555555556666666666666665555544 33344444444
Q ss_pred H
Q 037695 593 C 593 (701)
Q Consensus 593 ~ 593 (701)
.
T Consensus 117 ~ 117 (168)
T CHL00033 117 H 117 (168)
T ss_pred H
Confidence 4
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.67 E-value=0.0016 Score=63.39 Aligned_cols=129 Identities=12% Similarity=0.086 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHH
Q 037695 515 VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ-VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENL 592 (701)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~ 592 (701)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...+..-.+ .++.+.|.++|+.+++..|. ...|...+..+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 356666666666666777777777776432 2334444444444233 45555577777777766555 55666666777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 593 CSFGYLEEAGKILGKVLRTASKAD---ASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
...|+.+.|..+|++++.. ..++ ...|..++..=.+.|+.+...++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777776654 2222 23666666666666666666666666666
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.67 E-value=0.00062 Score=66.25 Aligned_cols=131 Identities=14% Similarity=0.123 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037695 480 VNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK-NGRVEEATELMMKMLSKGLVPTVVTYRTVIHR 558 (701)
Q Consensus 480 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 558 (701)
.+|..++....+.+..+.|..+|.+.++.+ ..+...|......-.. .++.+.|..+|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578889999999999999999999998543 3344555555554333 57777799999999986 56778888888999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 559 YCQVGRVEDLLKLLEKMLSKQKCR----TAYNQVIENLCSFGYLEEAGKILGKVLRTA 612 (701)
Q Consensus 559 ~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (701)
+...|+.+.|..+|++++..-|.. ..|..++..=.+.|+++.+..+.+++.+.-
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999886664 488888888889999999999999988753
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.66 E-value=0.0012 Score=59.07 Aligned_cols=99 Identities=14% Similarity=-0.010 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHH
Q 037695 583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKA--DASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVS 659 (701)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~ 659 (701)
..+..++..+...|++++|...+++++.....+ ...++..++..|...|++++|+..+++++. +.|+. ..+..++
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~--~~~~~~~~~~~la 113 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE--RNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHH
Confidence 344555555556666666666666665543222 123566666666666666666666666665 33332 3344444
Q ss_pred HHHH-------hcCCHH-------HHHHHHHHHHHcCC
Q 037695 660 ERLI-------LEGKSE-------EADTLMLRFVERGH 683 (701)
Q Consensus 660 ~~~~-------~~g~~~-------~A~~~~~~~~~~~~ 683 (701)
..+. ..|+++ +|..+++++....|
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4444 666666 44555555555554
No 177
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.64 E-value=0.00032 Score=51.76 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 037695 549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFG-YLEEAGKILGKVLRT 611 (701)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 611 (701)
+.+|..+...+...|++++|+..|+++++.+|+ ..++..++.++...| ++++|+..++++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 344555555555555555555555555555554 445555555555555 455555555555443
No 178
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.64 E-value=0.072 Score=51.77 Aligned_cols=283 Identities=16% Similarity=0.137 Sum_probs=176.3
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHH
Q 037695 387 NGKSLEAREMINTSEEEWWTPNAITYSVVMHGL--RREGKLSEACDVVREMVKKGFFPTPV--EINLLIQSLCREGKMDG 462 (701)
Q Consensus 387 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~~~~ 462 (701)
.|+-..|.++-.+..+. +..|......++.+- .-.|+++.|.+-|+.|... |... .+..|.-.--+.|+.+.
T Consensus 97 AGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Garea 172 (531)
T COG3898 97 AGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREA 172 (531)
T ss_pred cCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHH
Confidence 45666666665554421 233444444444433 3467888888888887653 1111 12223223346788888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHH--HHHHHHHHH---hcCCHHHHHHH
Q 037695 463 AKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCK-KDPDTVT--YTTIIDALS---KNGRVEEATEL 536 (701)
Q Consensus 463 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~--~~~li~~~~---~~g~~~~A~~~ 536 (701)
|.++-+..-.. -+.-...+.+.+...|..|+++.|+++.+.-.... +.++..- -..|+.+-. -..+...|...
T Consensus 173 Ar~yAe~Aa~~-Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~ 251 (531)
T COG3898 173 ARHYAERAAEK-APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD 251 (531)
T ss_pred HHHHHHHHHhh-ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence 88877776554 23345567778888888999999999888765432 3444322 222332211 12345556665
Q ss_pred HHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCC
Q 037695 537 MMKMLSKGLVPTVVT-YRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAG-KILGKVLRTASK 614 (701)
Q Consensus 537 ~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~ 614 (701)
-.+..+ +.||..- -..-..++.+.|+..++-.+++.+.+..|.+.++..+ .+.+.|+..... +-.+++.... +
T Consensus 252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY--~~ar~gdta~dRlkRa~~L~slk-~ 326 (531)
T COG3898 252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLY--VRARSGDTALDRLKRAKKLESLK-P 326 (531)
T ss_pred HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHH--HHhcCCCcHHHHHHHHHHHHhcC-c
Confidence 555544 4555332 2334578899999999999999999988876655332 334555533221 1122222222 3
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 037695 615 ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILE-GKSEEADTLMLRFVER 681 (701)
Q Consensus 615 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 681 (701)
.+......+..+-+..|++..|..-.+.+.+ ..|...+|..++++-... |+-.++..++-+.++.
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3556666778888999999999999888887 788888999888877655 9999999999888764
No 179
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.63 E-value=0.00075 Score=65.16 Aligned_cols=131 Identities=16% Similarity=0.141 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHH
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSK---QKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRT----AS-KADAS 618 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 618 (701)
.|..|.+.|.-.|+++.|+..-+.-+.. ..+ ..++..++.++.-.|+++.|.+.|+..+.. +- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4566666777788899888776543322 222 457788888888899999999888876433 22 23345
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhC-----CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 619 TCHVLVESYLNKGIPLLAYKVACRMFNR-----NLIPDLKLCKKVSERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
.+.+|+.+|.-..+++.|+.++.+-+.. +..-....+..++.++...|..++|..+.+..++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 6778888888888889998887765441 12223467778888888889989988887766554
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.61 E-value=0.0047 Score=58.51 Aligned_cols=166 Identities=9% Similarity=0.047 Sum_probs=109.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCh--hHHHH
Q 037695 513 DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTY---RTVIHRYCQVGRVEDLLKLLEKMLSKQKCR--TAYNQ 587 (701)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~ 587 (701)
+...+-.....+...|++++|...|+.+.... |-+.... ..++.++.+.+++++|...+++.++.+|+. ..+..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 33333344555677899999999999998863 2223332 456788899999999999999999998882 22223
Q ss_pred HHHHHH--hcC---------------C---HHHHHHHHHHHHHcCCCCCHH--H-------HH-------HHHHHHHhcC
Q 037695 588 VIENLC--SFG---------------Y---LEEAGKILGKVLRTASKADAS--T-------CH-------VLVESYLNKG 631 (701)
Q Consensus 588 l~~~~~--~~g---------------~---~~~A~~~~~~~~~~~~~~~~~--~-------~~-------~l~~~~~~~g 631 (701)
...+++ ..+ + ..+|...|+.+++.-|...-. . -+ ..+..|.+.|
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 333322 111 1 356778888888864332211 1 01 1245678888
Q ss_pred ChhhHHHHHHHHHhCCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 632 IPLLAYKVACRMFNRNLI--PDLKLCKKVSERLILEGKSEEADTLMLRFV 679 (701)
Q Consensus 632 ~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (701)
.+..|+.-++.++++-+. ........+..+|...|..++|..+...+.
T Consensus 190 ~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 190 AYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred chHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 888888888888883322 123677788888888888888888776543
No 181
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.60 E-value=0.0093 Score=63.12 Aligned_cols=67 Identities=9% Similarity=0.034 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 547 PTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTAS 613 (701)
Q Consensus 547 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 613 (701)
.++..|..+.-.....|++++|...+++++..+|+...|..++..+...|+.++|...+.++.+..+
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 3445565555555556777777777777777666666666667777777777777777777666543
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.60 E-value=0.019 Score=49.55 Aligned_cols=134 Identities=13% Similarity=0.126 Sum_probs=108.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHH
Q 037695 545 LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK---CRTAYNQVIENLCSFGYLEEAGKILGKVLRTAS-KADASTC 620 (701)
Q Consensus 545 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 620 (701)
+.|+...-..|..+....|+..+|...|++... ++ +....-.+..+....++...|...++++.+.++ ..++.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 467777778899999999999999999999886 33 356777888999999999999999999988764 1123334
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 621 HVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 621 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
-.+...|...|.+..|...|+.+.. .-|+...-...+..+.+.|+.++|..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 4678899999999999999999999 5666666666777899999999888777666554
No 183
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.13 Score=53.73 Aligned_cols=121 Identities=8% Similarity=0.030 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHH----------HHHHcCChhHHHHHHHHHHHCCC
Q 037695 138 RHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMV----------AYSRAGKLRNAMYVLSMMQKAAV 207 (701)
Q Consensus 138 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~----------~~~~~g~~~~A~~~~~~~~~~~~ 207 (701)
.|.+..|..+.......-.++.|...|-.... -+.+.....|-. .-+-.|.+++|.++|-.|.+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 46677888887776666666666666644332 111111111111 1112467777777777665432
Q ss_pred CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCC--CCChHHHHHHHHHHHhcCChhHHHHHHHH
Q 037695 208 APNLLICNTAIHVLVVGNKLAKALRFLERMQLAGI--TPNVLTYNCLIKGYCDLHRIKDAIKLIDE 271 (701)
Q Consensus 208 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 271 (701)
..+..+.+.|++-...++++.-- .+. ..-...|+.+...++....+++|.+.+..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~-~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGG-SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23444555566555554443211 000 00123566666666666666666666554
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.58 E-value=0.0022 Score=62.72 Aligned_cols=165 Identities=18% Similarity=0.148 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-
Q 037695 479 VVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK---DPD--TVTYTTIIDALSKNGRVEEATELMMKMLSK----GLVPT- 548 (701)
Q Consensus 479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~- 548 (701)
...|......|...+++++|.+.|.+...... .+. ...|.....+|.+. ++++|+..+++.... | .|+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~ 112 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHH
Confidence 34466666777777778877777776643211 111 12344444444443 777777777766542 3 222
Q ss_pred -HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcC---CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---
Q 037695 549 -VVTYRTVIHRYCQV-GRVEDLLKLLEKMLSKQ---KC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD--- 616 (701)
Q Consensus 549 -~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~---p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--- 616 (701)
...+..+...|... |++++|++.|+++.... .. ...+..++..+.+.|++++|..+|+++.......+
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 33455566666666 67777777777665541 11 23445566667777777777777777665432111
Q ss_pred --HH-HHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 617 --AS-TCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 617 --~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
.. .+...+-+++..|++..|...+++...
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 122233355566677777777776665
No 185
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.57 E-value=0.0013 Score=66.40 Aligned_cols=123 Identities=17% Similarity=0.203 Sum_probs=95.4
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 037695 335 CIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHH--GCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITY 412 (701)
Q Consensus 335 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 412 (701)
.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|...|..+.+..++..=..-|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3456666777777777778888888888887764 22223345568888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695 413 SVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE 457 (701)
Q Consensus 413 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 457 (701)
+.||+.+.+.|++..|.++...|...+...++.|+...+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888888888888888877777777777777666655
No 186
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.55 E-value=0.11 Score=51.66 Aligned_cols=196 Identities=15% Similarity=0.129 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-------HHHHHHH----hcCCHHHHHHHHHHHHhCCCCC
Q 037695 479 VVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYT-------TIIDALS----KNGRVEEATELMMKMLSKGLVP 547 (701)
Q Consensus 479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-------~li~~~~----~~g~~~~A~~~~~~m~~~~~~p 547 (701)
+.++..++....+.++...|...+.-+.- ..|+...-. .+-+..+ ..-+..+-+.+|+.....++..
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr 375 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR 375 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence 45677777788888888888887776654 344433211 1122222 1112334455666665543221
Q ss_pred C--HHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCC-hhHHHHH----HHHHH---hcCCHHHHHHHHHHHHHcCCCCC
Q 037695 548 T--VVTYRTVIHRYCQVGR-VEDLLKLLEKMLSKQKC-RTAYNQV----IENLC---SFGYLEEAGKILGKVLRTASKAD 616 (701)
Q Consensus 548 ~--~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~p~-~~~~~~l----~~~~~---~~g~~~~A~~~~~~~~~~~~~~~ 616 (701)
- ......-+.-+.+.|. -++|+.+++.+++-.+. ...-+.+ =..|. +...+..-..+-+-+-+.|.+|-
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 1 1112222344666676 78899999998877554 2222211 12222 12334444444444555565543
Q ss_pred ----HHHHHHHHH--HHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 617 ----ASTCHVLVE--SYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRF 678 (701)
Q Consensus 617 ----~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (701)
...-|-|.. -+..+|++.++.-+...+.+ +.|++.+|..++-++....++++|.+++.++
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 233444544 36789999999999888888 9999999999999999999999999999654
No 187
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.55 E-value=0.0012 Score=51.81 Aligned_cols=68 Identities=15% Similarity=0.258 Sum_probs=30.9
Q ss_pred CChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------CHhHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 037695 190 GKLRNAMYVLSMMQKAAV-APNLLICNTAIHVLVVGN--------KLAKALRFLERMQLAGITPNVLTYNCLIKGYC 257 (701)
Q Consensus 190 g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g--------~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 257 (701)
+++.....+|+.+++.|+ -|++.+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.++..+.
T Consensus 39 ~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 39 EDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred cchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 444444444444444444 444444444444443321 12233445555555555555555555554443
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.54 E-value=0.0023 Score=62.64 Aligned_cols=198 Identities=14% Similarity=0.116 Sum_probs=119.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--
Q 037695 445 VEINLLIQSLCREGKMDGAKKFMQECLNK----GCAVN-VVNFTSLIRGFCQKGDLEEALSLLDDMYL----CKKDPD-- 513 (701)
Q Consensus 445 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~p~-- 513 (701)
..|......|-..+++++|...|.+.... +-+.. ...|.....+|.+. ++++|+..+++... .| .|+
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~a 113 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence 35777777788888999999888877543 11111 22344444555444 88899988887653 33 333
Q ss_pred HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----h
Q 037695 514 TVTYTTIIDALSKN-GRVEEATELMMKMLSK----GLVPT--VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----R 582 (701)
Q Consensus 514 ~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~ 582 (701)
...+..+...|... |++++|++.|++..+. + .+. ..++..++..+.+.|++++|.++|+++...... .
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~ 192 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK 192 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence 23567777788787 8999999999887763 2 111 334667778888999999999999988765322 1
Q ss_pred ----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC--HHHHHHHHHHHHhcC--ChhhHHHHHHHHHh
Q 037695 583 ----TAYNQVIENLCSFGYLEEAGKILGKVLRTAS--KAD--ASTCHVLVESYLNKG--IPLLAYKVACRMFN 645 (701)
Q Consensus 583 ----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~--~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~ 645 (701)
..+...+-++...|++..|...+++.....+ ..+ ......|+.++-... .++.|+.-|..+.+
T Consensus 193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence 1223334455567899999999998876543 212 234455565554332 34445555544433
No 189
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.54 E-value=0.0015 Score=51.35 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=41.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037695 451 IQSLCREGKMDGAKKFMQECLNKGC-AVNVVNFTSLIRGFCQKG--------DLEEALSLLDDMYLCKKDPDTVTYTTII 521 (701)
Q Consensus 451 i~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g--------~~~~A~~~~~~~~~~~~~p~~~~~~~li 521 (701)
|..|...+++.....+|+.+++.|+ -|++.+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444566666666666666665 556666666655554432 2334455566666555666666666666
Q ss_pred HHHH
Q 037695 522 DALS 525 (701)
Q Consensus 522 ~~~~ 525 (701)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5544
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.46 E-value=0.0038 Score=59.56 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 037695 552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR----TAYNQVIENLCSFGYLEEAGKILGKVLRTASK--ADASTCHVLVE 625 (701)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~ 625 (701)
|...+..+.+.|++++|+..|+.+++.+|+. .++..++..|...|++++|...|+.+++..+. ..+..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 3333333344566666666666666666652 35556666666666666666666666654321 12334444555
Q ss_pred HHHhcCChhhHHHHHHHHHh
Q 037695 626 SYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~ 645 (701)
.+...|+++.|..+|+++.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666666
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.46 E-value=0.00079 Score=48.87 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=26.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 557 HRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLR 610 (701)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 610 (701)
..+.+.|++++|...|++++...|. ..++..++.++...|++++|...|+++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555555444 34444455555555555555555554444
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.44 E-value=0.0046 Score=57.04 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=39.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037695 520 IIDALSKNGRVEEATELMMKMLSKG--LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC 581 (701)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 581 (701)
....+...|++.+|...|+.+.... -+--......++.++.+.|+++.|...+++.+...|.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 3445567777888888887777642 1112444556667777778888888888777777776
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.44 E-value=0.0044 Score=50.83 Aligned_cols=55 Identities=25% Similarity=0.321 Sum_probs=27.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 556 IHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKVLR 610 (701)
Q Consensus 556 ~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 610 (701)
..++-..|+.++|+.+|++.+..+++ ...+-.++..|...|++++|..++++.+.
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555554332 22344445555555555555555555544
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.44 E-value=0.043 Score=52.04 Aligned_cols=55 Identities=18% Similarity=0.206 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 554 TVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKV 608 (701)
Q Consensus 554 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 608 (701)
.+...|.+.|.+..|..-++.+++..|. ..+...++.+|...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4556677777777777777777777766 345566677777777777777666544
No 195
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.42 E-value=0.16 Score=50.42 Aligned_cols=146 Identities=17% Similarity=0.233 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 037695 444 PVEINLLIQSLCREGKMDGAKKFMQECLNKG-CAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTY-TTII 521 (701)
Q Consensus 444 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li 521 (701)
..+|...+....+..-++.|..+|-++.+.+ ..+++..+++++.-++. |+..-|.++|+--... -||...| +..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3456666777777777888888888888877 56677788888876664 6777888888765542 3444333 3445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 037695 522 DALSKNGRVEEATELMMKMLSKGLVPT--VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLC 593 (701)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~ 593 (701)
.-+...++-..|..+|+..+.. +..+ ...|..++.--..-|+...+..+=+++....|...+.......|.
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ 546 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHh
Confidence 5566778888888888865543 2222 556788888778888888888888888777776544444444443
No 196
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.42 E-value=0.00014 Score=43.48 Aligned_cols=29 Identities=45% Similarity=0.964 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHchhCC
Q 037695 248 TYNCLIKGYCDLHRIKDAIKLIDEMPLKG 276 (701)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 276 (701)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 197
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.40 E-value=0.17 Score=50.29 Aligned_cols=453 Identities=12% Similarity=0.086 Sum_probs=223.9
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 037695 161 KRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLA 240 (701)
Q Consensus 161 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 240 (701)
.++-+.++. + |.|+.+|-.|+..+...|..++..+++++|..-- +--..+|..-+..-....++.....+|.+-...
T Consensus 29 lrLRerIkd-N-PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 29 LRLRERIKD-N-PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHHhhc-C-chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 344444443 2 4588899999999999999999999999987432 334457777777777778899999999888765
Q ss_pred CCCCChHHHHHHHHHHHhcCChh------HHHHHHHHch-hCCCCCCH-HHHHHHH---HHHHHcCCh------hHHHHH
Q 037695 241 GITPNVLTYNCLIKGYCDLHRIK------DAIKLIDEMP-LKGCSPDK-VSYYTVM---GYLCKEKRI------KEVRDL 303 (701)
Q Consensus 241 g~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~m~-~~g~~pd~-~~~~~ll---~~~~~~g~~------~~a~~~ 303 (701)
..+...|..-+..-.+.+..- ...+.|+-.. ..++.|-. ..|+..+ ...-..|.+ +..+..
T Consensus 106 --~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 --SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred --hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 345666666665444433211 1122232222 23445432 2233332 222223333 334444
Q ss_pred HHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCC----CCHHHH
Q 037695 304 MEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYH--HGCK----PNTVSY 377 (701)
Q Consensus 304 ~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~~~ 377 (701)
+.+++. ...|++++-..-++..... .+..|-...+. -...-+-.|.+.++++.. .|.. .+..++
T Consensus 184 Y~ral~-----tP~~nleklW~dy~~fE~e---~N~~TarKfvg--e~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~ 253 (660)
T COG5107 184 YMRALQ-----TPMGNLEKLWKDYENFELE---LNKITARKFVG--ETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTA 253 (660)
T ss_pred HHHHHc-----CccccHHHHHHHHHHHHHH---HHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHhccccccCchhhhhh
Confidence 444433 1123333333333322211 11111111100 001123445555555543 2321 122222
Q ss_pred HHH-----------HHHHHhc-----CC-HHH-HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 378 TAF-----------LNGLCHN-----GK-SLE-AREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKG 439 (701)
Q Consensus 378 ~~l-----------i~~~~~~-----g~-~~~-A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~ 439 (701)
+.. |.--... |+ ..+ ..-++++... .+.-....|-.--.-+...++-+.|+.....-.
T Consensus 254 nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~-y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~--- 329 (660)
T COG5107 254 NKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILD-YFYYAEEVWFDYSEYLIGISDKQKALKTVERGI--- 329 (660)
T ss_pred ccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc---
Confidence 221 1110000 00 000 0001111111 011122222222233344455555555443322
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCC
Q 037695 440 FFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQ---------KGDLEEALSLLDDMYLCKK 510 (701)
Q Consensus 440 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~ 510 (701)
+-.+.....+...|....+-+.+...|+.+... |.+-|.+ .|+++.-.+++-.- .
T Consensus 330 -~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~-----------L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr----~ 393 (660)
T COG5107 330 -EMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQD-----------LKRKYSMGESESASKVDNNFEYSKELLLKR----I 393 (660)
T ss_pred -cCCCchheeHHHHHhhcccHHHHhhhHHHHHHH-----------HHHHHhhhhhhhhccccCCccccHHHHHHH----H
Confidence 222211111222223333333333333333221 1111110 12221111111111 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHH-HHH
Q 037695 511 DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKG-LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAY-NQV 588 (701)
Q Consensus 511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~l 588 (701)
..-...|...+..-.+..-.+.|..+|-++.+.| +.++..++++++.-++ .|+..-|..+|+.-+...|+...| ...
T Consensus 394 ~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~ky 472 (660)
T COG5107 394 NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKY 472 (660)
T ss_pred hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHH
Confidence 1223456667776677777888888888888877 5567777888777665 577788888888888777775544 456
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695 589 IENLCSFGYLEEAGKILGKVLRTASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL 652 (701)
Q Consensus 589 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 652 (701)
+..+...++-+.|..+|+..+..- ..+ ..+|..++.--..-|+...+..+-+++.. ..|-.
T Consensus 473 l~fLi~inde~naraLFetsv~r~-~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQe 535 (660)
T COG5107 473 LLFLIRINDEENARALFETSVERL-EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQE 535 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHHH-HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcH
Confidence 777778888888888888655431 112 45677777777777888777777777776 44443
No 198
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.38 E-value=0.0083 Score=49.24 Aligned_cols=91 Identities=25% Similarity=0.225 Sum_probs=65.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---h-hHHHHHHHHHH
Q 037695 520 IIDALSKNGRVEEATELMMKMLSKGLVPT--VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC---R-TAYNQVIENLC 593 (701)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~-~~~~~l~~~~~ 593 (701)
+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++.....|+ . .....+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 34566778888888888888888775544 345666777888888888888888888877665 2 22334456677
Q ss_pred hcCCHHHHHHHHHHHHH
Q 037695 594 SFGYLEEAGKILGKVLR 610 (701)
Q Consensus 594 ~~g~~~~A~~~~~~~~~ 610 (701)
..|+.++|+..+-..+.
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 78888888888776654
No 199
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.36 E-value=0.00024 Score=42.48 Aligned_cols=28 Identities=43% Similarity=0.850 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037695 481 NFTSLIRGFCQKGDLEEALSLLDDMYLC 508 (701)
Q Consensus 481 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 508 (701)
+|++++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444555555555555555555554443
No 200
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.33 E-value=0.0088 Score=53.47 Aligned_cols=105 Identities=17% Similarity=0.262 Sum_probs=63.1
Q ss_pred CCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHH
Q 037695 174 CRPEAFSYLMVAYSRA-----GKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLT 248 (701)
Q Consensus 174 ~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~ 248 (701)
.+-.+|..++..|.+. |.++=....+..|.+.|+..|..+|+.||..+=+. .+ .|...
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg-~f---------------vp~n~- 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKG-KF---------------VPRNF- 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCC-Cc---------------ccccH-
Confidence 4666666666666533 44555555566666666666666666666655431 11 11111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCh
Q 037695 249 YNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRI 297 (701)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~ 297 (701)
+.++.-- .-.+.+-|++++++|...|+-||..++..++..+.+.+..
T Consensus 108 fQ~~F~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 108 FQAEFMH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHhcc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 1111111 1234467889999999999999999999999888776543
No 201
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.28 E-value=0.0057 Score=54.66 Aligned_cols=104 Identities=19% Similarity=0.239 Sum_probs=59.4
Q ss_pred CCChHHHHHHHHHHHh-----cCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC
Q 037695 243 TPNVLTYNCLIKGYCD-----LHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ 317 (701)
Q Consensus 243 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 317 (701)
..+-.+|..+++.|.+ .|.++=....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+ .....
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-----F~hyp 116 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-----FMHYP 116 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-----hccCc
Confidence 4567777777777764 46677777778888888888888888888877654 2211 11111111 00111
Q ss_pred CcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC
Q 037695 318 GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVG 353 (701)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 353 (701)
.+-+-|++++++|...|+-||..++..|++.+++.+
T Consensus 117 ~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 117 RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 233445555555555555555555555555554443
No 202
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.25 E-value=0.033 Score=57.43 Aligned_cols=126 Identities=13% Similarity=0.287 Sum_probs=72.3
Q ss_pred HHHHHHHHHHccCCHhHHHHHH---------HHHHhCCCCCChHHHHHHHHHHHhcCChh--HHHHHHHHchhCCCCCCH
Q 037695 213 ICNTAIHVLVVGNKLAKALRFL---------ERMQLAGITPNVLTYNCLIKGYCDLHRIK--DAIKLIDEMPLKGCSPDK 281 (701)
Q Consensus 213 ~~~~ll~~~~~~g~~~~A~~~~---------~~m~~~g~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~pd~ 281 (701)
.+.+-+..|...|.+++|.++- +.+... ..+...++..=++|.+..+.. +.+.-++++++.|-.|+.
T Consensus 558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~ 635 (1081)
T KOG1538|consen 558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND 635 (1081)
T ss_pred cccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence 3444445566667666665431 111110 112233444456666655543 444556777888877887
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695 282 VSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKM 361 (701)
Q Consensus 282 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 361 (701)
.. +...++-.|++.+|.++|.+- |.-..|+++|..|+-- -+..-+...|..++-..+
T Consensus 636 iL---lA~~~Ay~gKF~EAAklFk~~----------G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL 692 (1081)
T KOG1538|consen 636 LL---LADVFAYQGKFHEAAKLFKRS----------GHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKML 692 (1081)
T ss_pred HH---HHHHHHhhhhHHHHHHHHHHc----------CchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHH
Confidence 54 345567788999999988765 6667788887776631 234445556665554444
Q ss_pred HH
Q 037695 362 LQ 363 (701)
Q Consensus 362 ~~ 363 (701)
.+
T Consensus 693 ~R 694 (1081)
T KOG1538|consen 693 IR 694 (1081)
T ss_pred HH
Confidence 43
No 203
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.22 E-value=0.0015 Score=47.96 Aligned_cols=49 Identities=24% Similarity=0.361 Sum_probs=22.9
Q ss_pred cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 562 VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLR 610 (701)
Q Consensus 562 ~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 610 (701)
.|++++|+++|+++....|. ..++..++.+|.+.|++++|..+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44445555555554444443 33444444444444555555444444444
No 204
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.21 E-value=0.033 Score=58.57 Aligned_cols=162 Identities=15% Similarity=0.121 Sum_probs=105.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH------HHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCChhHHH-H
Q 037695 519 TIIDALSKNGRVEEATELMMKMLSKGLVPTVV------TYRTVIHRYC----QVGRVEDLLKLLEKMLSKQKCRTAYN-Q 587 (701)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~-~ 587 (701)
.++....-.|+-+.+++.+.+..+.+-.-.+. .|..++..++ .....+.|.++++.+.++.|+...|. .
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34444445556666666555554432111111 1222222222 34578889999999999999865554 4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHH-HHHHH
Q 037695 588 VIENLCSFGYLEEAGKILGKVLRTAS---KADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKV-SERLI 663 (701)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-~~~~~ 663 (701)
-++.+...|++++|++.|+++..... ......+.-+++.+...+++++|...+.++.+.+-- +..+|..+ +.++.
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~ 351 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLL 351 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHH
Confidence 46777788999999999998764221 233456677888999999999999999999983221 23444433 44566
Q ss_pred hcCCH-------HHHHHHHHHHHHc
Q 037695 664 LEGKS-------EEADTLMLRFVER 681 (701)
Q Consensus 664 ~~g~~-------~~A~~~~~~~~~~ 681 (701)
..|+. ++|.+++.++...
T Consensus 352 ~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 352 MLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhccchhhhhhHHHHHHHHHHHHHH
Confidence 78888 8999999888544
No 205
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.19 E-value=0.0016 Score=47.73 Aligned_cols=60 Identities=25% Similarity=0.372 Sum_probs=43.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHH
Q 037695 525 SKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAY 585 (701)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 585 (701)
...|++++|+.+|+++.... |-+...+..++.+|.+.|++++|.++++++....|+.+.+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 45677888888888877753 4467777777888888888888888888888777774333
No 206
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.18 E-value=0.087 Score=48.60 Aligned_cols=79 Identities=13% Similarity=0.193 Sum_probs=43.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhc
Q 037695 520 IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSF 595 (701)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~ 595 (701)
++.-|-.+....+|...+..+.+. =...-..++..|.+.|.+..|..-++.+++..|+ ..+...++.+|.+.
T Consensus 116 li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l 191 (203)
T PF13525_consen 116 LIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKL 191 (203)
T ss_dssp HHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHT
T ss_pred HHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 333344444455555544444331 0111223566777788888888888888877776 23556667777777
Q ss_pred CCHHHHH
Q 037695 596 GYLEEAG 602 (701)
Q Consensus 596 g~~~~A~ 602 (701)
|..+.|.
T Consensus 192 ~~~~~a~ 198 (203)
T PF13525_consen 192 GLKQAAD 198 (203)
T ss_dssp T-HHHHH
T ss_pred CChHHHH
Confidence 7766443
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.14 E-value=0.0016 Score=48.51 Aligned_cols=61 Identities=25% Similarity=0.147 Sum_probs=38.5
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695 625 ESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQP 686 (701)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 686 (701)
..|...+++++|++++++++..++. +...+...+.++.+.|++.+|...++++.+..|..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 4566667777777777777663222 335566666677777777777777777776665433
No 208
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.13 E-value=0.012 Score=54.85 Aligned_cols=99 Identities=17% Similarity=0.087 Sum_probs=64.8
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-CCC-HhhHHHHHHHHHhcCC
Q 037695 592 LCSFGYLEEAGKILGKVLRTASK--ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNL-IPD-LKLCKKVSERLILEGK 667 (701)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~ 667 (701)
+.+.|++..|...|...++..+. ..+..+.-|+.++...|++++|..+|..+.+... .|. ++.+-+++.+..+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 33445555555555555554321 1122333367777777777777777777776322 222 3788889999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCchHH
Q 037695 668 SEEADTLMLRFVERGHIQPKSEE 690 (701)
Q Consensus 668 ~~~A~~~~~~~~~~~~~~~~~~~ 690 (701)
.++|..+|.++.+++|..+....
T Consensus 231 ~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 231 TDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHHHHHHCCCCHHHHH
Confidence 99999999999999987766543
No 209
>PRK15331 chaperone protein SicA; Provisional
Probab=97.11 E-value=0.032 Score=47.91 Aligned_cols=88 Identities=7% Similarity=-0.063 Sum_probs=58.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 037695 557 HRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLL 635 (701)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 635 (701)
.-+...|++++|..+|+-+...+|. ..-+..|+.++-..+++++|+..|..+..... -|+......+.+|...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 3345677777777777777666655 44556666666677777777777776655543 244445566777777777777
Q ss_pred HHHHHHHHHh
Q 037695 636 AYKVACRMFN 645 (701)
Q Consensus 636 A~~~~~~~~~ 645 (701)
|...|+....
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777776666
No 210
>PRK15331 chaperone protein SicA; Provisional
Probab=97.10 E-value=0.0091 Score=51.14 Aligned_cols=94 Identities=14% Similarity=-0.038 Sum_probs=78.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 037695 585 YNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLIL 664 (701)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 664 (701)
.-..+.-+...|++++|..+|.-+...++- ++.-|..|+.++-..|++++|+..|..+...+.. |+..+-+.+.+|..
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~ 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHH
Confidence 334556667899999999999998876643 6777889999999999999999999988775443 44456678899999
Q ss_pred cCCHHHHHHHHHHHHH
Q 037695 665 EGKSEEADTLMLRFVE 680 (701)
Q Consensus 665 ~g~~~~A~~~~~~~~~ 680 (701)
.|+.+.|...|+.+++
T Consensus 118 l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 118 MRKAAKARQCFELVNE 133 (165)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 9999999999999998
No 211
>PRK11906 transcriptional regulator; Provisional
Probab=97.06 E-value=0.017 Score=58.12 Aligned_cols=149 Identities=10% Similarity=-0.018 Sum_probs=112.5
Q ss_pred CHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcC
Q 037695 529 RVEEATELMMKMLSK-GLVPT-VVTYRTVIHRYCQ---------VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFG 596 (701)
Q Consensus 529 ~~~~A~~~~~~m~~~-~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 596 (701)
..+.|..+|.+.... .+.|+ ...|..+..++.. .....+|.++.+++++.+|. +.+...++.++.-.|
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788899999832 34554 5566666555432 23456788899999999887 778888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCCHHHHHH
Q 037695 597 YLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL---KLCKKVSERLILEGKSEEADT 673 (701)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~ 673 (701)
+++.|...|+++...++. ...+|...++...-.|+.++|.+.++++++ +.|.. .+...+++.|+..+ .++|+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 999999999999987643 677888888899999999999999999999 56653 45555556777555 688888
Q ss_pred HHHHHHHc
Q 037695 674 LMLRFVER 681 (701)
Q Consensus 674 ~~~~~~~~ 681 (701)
+|-+-.+.
T Consensus 429 ~~~~~~~~ 436 (458)
T PRK11906 429 LYYKETES 436 (458)
T ss_pred HHhhcccc
Confidence 88655443
No 212
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.01 Score=58.18 Aligned_cols=98 Identities=13% Similarity=-0.004 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHH
Q 037695 583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSER 661 (701)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 661 (701)
..+..++.+|.+.+++.+|+....++++.+ +.|...+..-+.+|...|+++.|+..|+++++ +.|+. .+-..++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 467788889999999999999999999887 45888888889999999999999999999999 77765 555555554
Q ss_pred HHhcCCHHH-HHHHHHHHHHcCC
Q 037695 662 LILEGKSEE-ADTLMLRFVERGH 683 (701)
Q Consensus 662 ~~~~g~~~~-A~~~~~~~~~~~~ 683 (701)
-.+...+++ ..++|.+|...-.
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 444444443 4778888876544
No 213
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.00 E-value=0.32 Score=45.88 Aligned_cols=201 Identities=25% Similarity=0.188 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 037695 480 VNFTSLIRGFCQKGDLEEALSLLDDMYLC-KKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH- 557 (701)
Q Consensus 480 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~- 557 (701)
..+......+...+.+..+...+...... ........+..+...+...+++..+...+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 34444444455555555555555544321 112233344444444445555555555555555432111 111111122
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 037695 558 RYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP 633 (701)
Q Consensus 558 ~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 633 (701)
.+...|+++.|...+.++....|. ...+......+...++.+.|...+.++...........+..+...+...+.+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 455555555555555555443331 2222233333445556666666666555543221344455555555566666
Q ss_pred hhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 634 LLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 634 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
..|...+..... ..|+ ...+..+...+...+..+++...+.+..+..+
T Consensus 219 ~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 219 EEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred HHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 666666665555 3332 23333344444445556666666665555443
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.067 Score=49.04 Aligned_cols=165 Identities=19% Similarity=0.166 Sum_probs=116.1
Q ss_pred HHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 037695 113 AVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKL 192 (701)
Q Consensus 113 ~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~ 192 (701)
+.+..+..++..++.++ .+. ..+-+.++.++.-.|.+.-...++...++...+.++.....|.+.-.+.|+.
T Consensus 157 ~~~e~~~~~ESsv~lW~--KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~ 228 (366)
T KOG2796|consen 157 ANLEQGLAEESSIRLWR--KRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDI 228 (366)
T ss_pred HHHHhccchhhHHHHHH--HHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccH
Confidence 33444445555566533 221 2356788888888999999999999999987778899999999999999999
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHH-----HHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHH
Q 037695 193 RNAMYVLSMMQKAAVAPNLLICNTA-----IHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIK 267 (701)
Q Consensus 193 ~~A~~~~~~~~~~~~~~~~~~~~~l-----l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 267 (701)
+.|...|+...+.....|....+.+ ...+.-.+++..|...|.++.... +.|+..-|.-.-+..-.|+...|++
T Consensus 229 k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796|consen 229 KTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred HHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHH
Confidence 9999999977654334444444333 334556678888888888888764 3445555544444555789999999
Q ss_pred HHHHchhCCCCCCHHHHHHHH
Q 037695 268 LIDEMPLKGCSPDKVSYYTVM 288 (701)
Q Consensus 268 ~~~~m~~~g~~pd~~~~~~ll 288 (701)
.++.|... .|...+-++++
T Consensus 308 ~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 308 QLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred HHHHHhcc--CCccchhhhHH
Confidence 99999876 55555555444
No 215
>PRK11906 transcriptional regulator; Provisional
Probab=96.93 E-value=0.058 Score=54.44 Aligned_cols=149 Identities=13% Similarity=0.023 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037695 494 DLEEALSLLDDMYL-CKKDPD-TVTYTTIIDALSKN---------GRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQV 562 (701)
Q Consensus 494 ~~~~A~~~~~~~~~-~~~~p~-~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 562 (701)
..+.|+.+|.+... +.+.|+ ...|..+..++... ....+|.++-++..+.+ +.|+.....+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 45778999999872 224565 44565555554322 23556778888888876 67889888888888889
Q ss_pred CCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHH
Q 037695 563 GRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD-ASTCHVLVESYLNKGIPLLAYKVA 640 (701)
Q Consensus 563 g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 640 (701)
++++.|...|+++...+|+ ..++...+..+.-.|+.++|.+.++++++..+..- ..+....+..|+..+ .+.|+.+|
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 9999999999999999999 78888889999999999999999999988765322 334444555777776 56777776
Q ss_pred HHHH
Q 037695 641 CRMF 644 (701)
Q Consensus 641 ~~~~ 644 (701)
-+-.
T Consensus 431 ~~~~ 434 (458)
T PRK11906 431 YKET 434 (458)
T ss_pred hhcc
Confidence 5433
No 216
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.93 E-value=0.022 Score=55.40 Aligned_cols=281 Identities=13% Similarity=0.073 Sum_probs=145.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHh--C--CCC-CChhhHHHHHH
Q 037695 347 NGFCRVGELDQAKKMLQQMYHHGCKPNT----VSYTAFLNGLCHNGKSLEAREMINTSEE--E--WWT-PNAITYSVVMH 417 (701)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~--~--~~~-~~~~~~~~ll~ 417 (701)
.-+|+.|+......+|+..++.|.. |. .+|+.|-++|.-.+++++|+++...=+. . |-+ -.......|..
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 3488999999999999999987732 33 3566667777777888888876543111 0 000 00111112222
Q ss_pred HHHhcCCHHHHHHHHHHH----HHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHH
Q 037695 418 GLRREGKLSEACDVVREM----VKKGFF-PTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV--NVVNFTSLIRGFC 490 (701)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m----~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~ 490 (701)
.+--.|.+++|+-....- .+.|-. .....+..+...|...|+- .|++. +...++.-+.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~------------~g~~~pee~g~f~~ev~--- 168 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKC------------TGLEAPEEKGAFNAEVT--- 168 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccc------------cCCCChhhcccccHHHH---
Confidence 333344444444322211 111100 0111222222233222210 00000 0001110000
Q ss_pred hcCCHHHHHHHHHHHHh----CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHH
Q 037695 491 QKGDLEEALSLLDDMYL----CKKD-PDTVTYTTIIDALSKNGRVEEATELMMKML----SKGLV-PTVVTYRTVIHRYC 560 (701)
Q Consensus 491 ~~g~~~~A~~~~~~~~~----~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~----~~~~~-p~~~~~~~l~~~~~ 560 (701)
..++.|.++|.+-.+ .|-. .--..|..|...|.-.|+++.|+...+.-+ +.|-. .-...+..+.+++.
T Consensus 169 --~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 169 --SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred --HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 113344444443221 1100 011235555555566778888877654322 22311 12345677788888
Q ss_pred hcCCHHHHHHHHHHHHhc----CCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHH
Q 037695 561 QVGRVEDLLKLLEKMLSK----QKC---RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS-----KADASTCHVLVESYL 628 (701)
Q Consensus 561 ~~g~~~~A~~~~~~~~~~----~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~ 628 (701)
-.|+++.|.+.|+..+.. +.. ......|+..|.-...+++|+.++.+-+.... .-....|.+|+.+|.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 889999998888776543 211 34556778888878888888888776443211 123456678888888
Q ss_pred hcCChhhHHHHHHHHHh
Q 037695 629 NKGIPLLAYKVACRMFN 645 (701)
Q Consensus 629 ~~g~~~~A~~~~~~~~~ 645 (701)
..|..++|+.+++..++
T Consensus 327 alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 327 ALGEHRKALYFAELHLR 343 (639)
T ss_pred hhhhHHHHHHHHHHHHH
Confidence 88888888888776655
No 217
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.33 Score=44.74 Aligned_cols=133 Identities=9% Similarity=0.034 Sum_probs=92.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-----HHHH
Q 037695 481 NFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVT-----YRTV 555 (701)
Q Consensus 481 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-----~~~l 555 (701)
..+.++.++.-.|.+.-.+..+++.++...+.++.....|++.-.+.|+.+.|...|++..+..-..+..+ ....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 44556666667777777888888887766566677777888888888888888888886655322223222 2333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 556 IHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS 613 (701)
Q Consensus 556 ~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 613 (701)
...|.-++++..|...+.+++..+|. +...|.-+-++.-.|+...|++.++.+.+..+
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34455667788888888888877766 55566666666677888888888888877543
No 218
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.91 E-value=0.22 Score=51.73 Aligned_cols=77 Identities=18% Similarity=0.211 Sum_probs=39.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-hHH----------HHHHHHHH
Q 037695 525 SKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR-TAY----------NQVIENLC 593 (701)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~----------~~l~~~~~ 593 (701)
-+...+.-|.++|..|-+. ..++......++|++|..+-++..+..|+. ..| ..--.+|.
T Consensus 758 k~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfh 828 (1081)
T KOG1538|consen 758 KKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFH 828 (1081)
T ss_pred hhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHH
Confidence 3444455555666555321 234455556666666666665554443331 001 11123455
Q ss_pred hcCCHHHHHHHHHHHHH
Q 037695 594 SFGYLEEAGKILGKVLR 610 (701)
Q Consensus 594 ~~g~~~~A~~~~~~~~~ 610 (701)
++|+..+|.++++++..
T Consensus 829 kAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 829 KAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HhcchHHHHHHHHHhhh
Confidence 66777777777776643
No 219
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.90 E-value=0.33 Score=48.43 Aligned_cols=120 Identities=18% Similarity=0.088 Sum_probs=59.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCC
Q 037695 527 NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ---------VGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGY 597 (701)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 597 (701)
.|+.++|+.++..+....-.+++.+|..+...|-. ....++|+..|.+.....|+..+--.++..+...|.
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGH 274 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCC
Confidence 55555565555554443334555555555544421 112667777777777766652222222222333332
Q ss_pred H----HHHHHHH----HHHHHcC---CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 037695 598 L----EEAGKIL----GKVLRTA---SKADASTCHVLVESYLNKGIPLLAYKVACRMFNR 646 (701)
Q Consensus 598 ~----~~A~~~~----~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (701)
. .+..++- ..+.+.+ ...+-..+..++.++.-.|++++|.+.+++|.+.
T Consensus 275 ~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 275 DFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1 1112221 1111122 2334455566677777777777777777777763
No 220
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.87 E-value=0.044 Score=45.90 Aligned_cols=117 Identities=15% Similarity=0.024 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695 552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESY 627 (701)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 627 (701)
+..-.....+.|++++|.+.|+.+..+.|. ..+.-.++.+|.+.|++++|...+++.+++++.....-|.....++
T Consensus 13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL 92 (142)
T PF13512_consen 13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGL 92 (142)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHH
Confidence 334445556778888888888888888776 3456677888888888888888888888887643334444444443
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695 628 LNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQP 686 (701)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 686 (701)
........ .+..+.. ..-| .+...+|...|++++++.|.++
T Consensus 93 ~~~~~~~~---~~~~~~~--~drD-------------~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 93 SYYEQDEG---SLQSFFR--SDRD-------------PTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHhhh---HHhhhcc--cccC-------------cHHHHHHHHHHHHHHHHCcCCh
Confidence 33222221 1112221 1111 1224578888999998887554
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.85 E-value=0.0045 Score=46.83 Aligned_cols=62 Identities=18% Similarity=0.101 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhC----CC-CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 619 TCHVLVESYLNKGIPLLAYKVACRMFNR----NL-IPD-LKLCKKVSERLILEGKSEEADTLMLRFVE 680 (701)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (701)
+++.++..|...|++++|+..++++++. |. .|+ ..++..++.++...|++++|+++++++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555555555555555555555431 10 111 25566667777777777777777766654
No 222
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.85 E-value=0.008 Score=44.74 Aligned_cols=54 Identities=28% Similarity=0.268 Sum_probs=27.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 558 RYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRT 611 (701)
Q Consensus 558 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 611 (701)
.|.+.+++++|.++++.++...|. +..+...+.++...|++++|...++++++.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344555555555555555555544 344444555555555555555555555544
No 223
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.72 E-value=0.71 Score=45.63 Aligned_cols=105 Identities=13% Similarity=0.217 Sum_probs=53.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 377 YTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCR 456 (701)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 456 (701)
.+..|.-+...|+...|.++-.+.. .|+..-|-..+.+++..++|++...+... +-++..|..++..|.+
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK 249 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence 3334444455555555555544432 25555555666666666666554443221 1123455555566666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695 457 EGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSL 501 (701)
Q Consensus 457 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 501 (701)
.|+..+|..+...+ .+..-+..|.++|++.+|.+.
T Consensus 250 ~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 250 YGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHH
Confidence 66655555555431 113345555555655555544
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.69 E-value=0.038 Score=44.67 Aligned_cols=92 Identities=16% Similarity=0.074 Sum_probs=52.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-CCCCCCH--hhHHHHHHHHHhcC
Q 037695 590 ENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN-RNLIPDL--KLCKKVSERLILEG 666 (701)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~--~~~~~l~~~~~~~g 666 (701)
-++...|+++.|++.|.+.+..-++ .+..||.-..++.-+|+.++|++-+.++++ .|..... ..|-.-+..|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3455566666666666666654422 556666666666666666666666666665 2222111 23333444555666
Q ss_pred CHHHHHHHHHHHHHcC
Q 037695 667 KSEEADTLMLRFVERG 682 (701)
Q Consensus 667 ~~~~A~~~~~~~~~~~ 682 (701)
+.+.|..-|+.+-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666666665
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.65 E-value=0.13 Score=44.57 Aligned_cols=70 Identities=23% Similarity=0.247 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHhh
Q 037695 584 AYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN-----RNLIPDLKL 654 (701)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~ 654 (701)
+...++..+...|++++|..++++++... +.+...|..++.+|...|+...|+..|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34455556666777777777777776655 33666777777777777777777777666543 366666543
No 226
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.62 E-value=0.033 Score=51.93 Aligned_cols=96 Identities=20% Similarity=0.205 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHH
Q 037695 516 TYTTIIDALSKNGRVEEATELMMKMLSKG--LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVI 589 (701)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 589 (701)
.|+.-+.. .+.|++..|...|...++.. -.-.+..+..|..++...|++++|..+|..+.+..|. +.++..|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45544443 34555666666666666642 0112334555666666677777777777666666554 45666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 037695 590 ENLCSFGYLEEAGKILGKVLRTA 612 (701)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~~~~~~ 612 (701)
.+..+.|+.++|...|+++++.-
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 66666777777777776666643
No 227
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.037 Score=54.32 Aligned_cols=96 Identities=16% Similarity=0.080 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-hHHHHHHHHHH
Q 037695 515 VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR-TAYNQVIENLC 593 (701)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~ 593 (701)
.++..+.-+|.+.+++..|++..++.+..+ ++|...+..-..+|...|+++.|+..|+++++..|.. .+-+.|+.+--
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345667778888888888888888888875 6778887778888888888888888888888888874 44445555444
Q ss_pred hcCCHHH-HHHHHHHHHHc
Q 037695 594 SFGYLEE-AGKILGKVLRT 611 (701)
Q Consensus 594 ~~g~~~~-A~~~~~~~~~~ 611 (701)
+.....+ ..++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 4444333 35666666543
No 228
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.58 E-value=1.2 Score=46.46 Aligned_cols=123 Identities=14% Similarity=0.075 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037695 479 VVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHR 558 (701)
Q Consensus 479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 558 (701)
..+|+..+.-....|+.+.+.-+|+...-- +..=...|-..+.-....|+.+-|..++....+--++-.+.+-..-...
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 344555555555555555555555554310 0111122333333333335555555554444433222222221111111
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHH
Q 037695 559 YCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAG 602 (701)
Q Consensus 559 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 602 (701)
.-..|+++.|..+++.+.+..|. ......-+....+.|+.+.+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 22345555555555555555544 223333344444555555554
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.054 Score=51.43 Aligned_cols=114 Identities=18% Similarity=0.110 Sum_probs=52.5
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCHHH
Q 037695 492 KGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTY----RTVIHRYCQVGRVED 567 (701)
Q Consensus 492 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~----~~l~~~~~~~g~~~~ 567 (701)
.|++.+|...++++.+. .+.|...+..--.+|...|+...-...++++... ..||...| ..+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 44555555555555443 2334444554455555555555555555554433 12222211 112222334555555
Q ss_pred HHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 568 LLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGK 607 (701)
Q Consensus 568 A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 607 (701)
|.+.-++.++.++. .-+..++...+-..|+.+++.++..+
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 55555555555443 23333444444455555555555443
No 230
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.55 E-value=0.16 Score=48.95 Aligned_cols=227 Identities=13% Similarity=0.073 Sum_probs=115.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH---HHHHHHHHHHHh
Q 037695 419 LRREGKLSEACDVVREMVKKG--FFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK--GCAVNV---VNFTSLIRGFCQ 491 (701)
Q Consensus 419 ~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~---~~~~~ll~~~~~ 491 (701)
+....+.++|+..+.+.+.+- ...--.++..+..+.+..|.++++...--..... ...... ..|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777665531 1112345666677777777776665442221110 011111 122233333333
Q ss_pred cCCHHHHHHHHHHHHh-CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHhc
Q 037695 492 KGDLEEALSLLDDMYL-CKKDP---DTVTYTTIIDALSKNGRVEEATELMMKMLSKGL---VP--TVVTYRTVIHRYCQV 562 (701)
Q Consensus 492 ~g~~~~A~~~~~~~~~-~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~l~~~~~~~ 562 (701)
.-++.+++.+-..-.. .|..| -.....++..++...+.++++++.|+...+..- .| ....+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 3344444443333221 11111 112233455566666677777777776654311 11 133566677777777
Q ss_pred CCHHHHHHHHHHHHhcCC-----C-h-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHH
Q 037695 563 GRVEDLLKLLEKMLSKQK-----C-R-----TAYNQVIENLCSFGYLEEAGKILGKVLRTAS-KADAS----TCHVLVES 626 (701)
Q Consensus 563 g~~~~A~~~~~~~~~~~p-----~-~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~----~~~~l~~~ 626 (701)
.++++|.-+..++...-. + . .+...+.-+|...|++..|.+.-+++.+... .-|.. ....+++.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 777777766665544311 1 1 1223445556666666666666666544321 11222 23445667
Q ss_pred HHhcCChhhHHHHHHHHHh
Q 037695 627 YLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~ 645 (701)
|...|+.+.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 7777777777777776665
No 231
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.51 E-value=0.015 Score=43.89 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=10.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 552 YRTVIHRYCQVGRVEDLLKLLEKML 576 (701)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~ 576 (701)
|+.+...|...|++++|+..|++++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.50 E-value=0.6 Score=46.61 Aligned_cols=163 Identities=11% Similarity=0.006 Sum_probs=106.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhc--CCChhHHHHHHH
Q 037695 519 TIIDALSKNGRVEEATELMMKMLSKG---LVPTVVTYRTVIHRYCQ---VGRVEDLLKLLEKMLSK--QKCRTAYNQVIE 590 (701)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~ 590 (701)
.++-+|....+++..+++.+.+.... +.-....-...+-++.+ .|+.++|++++..++.. .+++.++..+++
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 44556888899999999999988741 12233333345556677 99999999999985544 234788888777
Q ss_pred HHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh----HHHHH----HHHHhCCCCC---
Q 037695 591 NLCS---------FGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLL----AYKVA----CRMFNRNLIP--- 650 (701)
Q Consensus 591 ~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----A~~~~----~~~~~~~~~p--- 650 (701)
.|.. ....++|+..|.+.-+.. |+...-..++..+...|...+ ..++. ..+.++|...
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 7652 234789999999987754 454443444445555554222 22222 2222344332
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 651 DLKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 651 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
+.-.+..++.+.+-.|++++|.+.+++|.+..+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 334445677788889999999999999998753
No 233
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.45 E-value=1.7 Score=46.56 Aligned_cols=113 Identities=14% Similarity=0.199 Sum_probs=79.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695 443 TPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIID 522 (701)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 522 (701)
..-+.+--+.-+...|+..+|.++-.+.. -||-..|-.-+.+++..+++++-.++-+.+. ++.-|.....
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe 752 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVE 752 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHH
Confidence 33445555666677788888888766653 3577777777888888888888777665542 2456777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 523 ALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEK 574 (701)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 574 (701)
+|.+.|+.++|.+++-+... .. -...+|.+.|++.+|.++--+
T Consensus 753 ~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 753 ACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHHH
Confidence 88888998898888876532 11 456778888888888766543
No 234
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.45 E-value=0.42 Score=42.76 Aligned_cols=178 Identities=15% Similarity=0.022 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 495 LEEALSLLDDMYLCKKDPD-TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLE 573 (701)
Q Consensus 495 ~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 573 (701)
+.-|.--|.+... +.|+ +..||.|.--+...|+++.|.+.|+...+....-+-...+.-+ ++.-.|++.-|.+-+.
T Consensus 81 ~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~ 157 (297)
T COG4785 81 RALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLL 157 (297)
T ss_pred HHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHH
Confidence 3333333444333 3444 4567777777777888888888888777653111111122212 2334677777777777
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcCChhhHHHHHHHHHhCCCCCC-
Q 037695 574 KMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHV-LVESYLNKGIPLLAYKVACRMFNRNLIPD- 651 (701)
Q Consensus 574 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 651 (701)
+.-+.+|+.+--.-.+..--..-+..+|..-+.+--+ ..|...|.. ++..|.-+=..+.+ ++++.. +-..+
T Consensus 158 ~fYQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~e~l---~~~~~a-~a~~n~ 230 (297)
T COG4785 158 AFYQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISEETL---MERLKA-DATDNT 230 (297)
T ss_pred HHHhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccHHHH---HHHHHh-hccchH
Confidence 7766666533222222222344556666544433222 223333322 22222211111211 222222 11111
Q ss_pred ------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 652 ------LKLCKKVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 652 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
..+|-.+++-+...|+.++|..+|+-++..+
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 2566677777778888888888887766543
No 235
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.44 E-value=0.076 Score=44.52 Aligned_cols=79 Identities=13% Similarity=0.158 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh--hHHHHHHH
Q 037695 515 VTYTTIIDALSKNGRVEEATELMMKMLSKG--LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR--TAYNQVIE 590 (701)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~--~~~~~l~~ 590 (701)
..|.. .....+.|++++|.+.|+.+...- -+-....-..++.+|.+.+++++|...+++.++.+|.. ..|.....
T Consensus 12 ~ly~~-a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQE-AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHH-HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 33443 344568899999999999998861 12234566778899999999999999999999999982 34555555
Q ss_pred HHHh
Q 037695 591 NLCS 594 (701)
Q Consensus 591 ~~~~ 594 (701)
+++.
T Consensus 91 gL~~ 94 (142)
T PF13512_consen 91 GLSY 94 (142)
T ss_pred HHHH
Confidence 5544
No 236
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.41 E-value=0.81 Score=42.55 Aligned_cols=52 Identities=15% Similarity=0.289 Sum_probs=22.6
Q ss_pred hcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695 456 REGKMDGAKKFMQECLNKG--CAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYL 507 (701)
Q Consensus 456 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 507 (701)
+.|++++|...|+.+.... .+-...+.-.++-++.+.++++.|+..+++...
T Consensus 46 ~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ 99 (254)
T COG4105 46 QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIR 99 (254)
T ss_pred hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3445555555555444321 011122233334444455555555555555444
No 237
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.33 E-value=0.019 Score=57.67 Aligned_cols=101 Identities=12% Similarity=-0.064 Sum_probs=73.7
Q ss_pred CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhH
Q 037695 579 QKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADA--STCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLC 655 (701)
Q Consensus 579 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~ 655 (701)
+|+ ...++.++.+|...|++++|+..|+++++.++.... .+|..++.+|...|++++|+..++++++.+ . ..|
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n---~~f 146 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-N---LKF 146 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-c---hhH
Confidence 344 678999999999999999999999999997654221 469999999999999999999999999931 2 123
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHHHHHcCC
Q 037695 656 KKVSE--RLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 656 ~~l~~--~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
..+.. .+....+..+..++++.+.+-|.
T Consensus 147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 147 STILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred HHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 21111 11222344567777777776664
No 238
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.30 E-value=0.031 Score=56.28 Aligned_cols=66 Identities=23% Similarity=0.121 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 546 VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR----TAYNQVIENLCSFGYLEEAGKILGKVLRT 611 (701)
Q Consensus 546 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 611 (701)
+.+...++.+..+|.+.|++++|+..|+++++.+|+. .+|..++.+|...|++++|+..++++++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4568889999999999999999999999999999983 35899999999999999999999999985
No 239
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.26 E-value=1.3 Score=43.44 Aligned_cols=266 Identities=14% Similarity=0.138 Sum_probs=156.5
Q ss_pred CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 037695 338 DVVTYTAVVNG--FCRVGELDQAKKMLQQMYHHGCKPNTVS--YTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYS 413 (701)
Q Consensus 338 ~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 413 (701)
|...+-.|+.+ -.-.|+++.|.+-|+.|... |.... ...|.-.--+.|..+.|..+-...-... +.-...+.
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~ 192 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAAR 192 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHH
Confidence 43334444433 34578999999999999863 32221 2233333346788888888777766542 23345677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 037695 414 VVMHGLRREGKLSEACDVVREMVKKG-FFPTPVE--INLLIQSLC---REGKMDGAKKFMQECLNKGCAVNVVNF-TSLI 486 (701)
Q Consensus 414 ~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~~~~--~~~li~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ll 486 (701)
.++...+..|+++.|+++++.-.... +.++..- -..|+.+-+ -..+...|...-.+..+ ..|+..-- -.-.
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AA 270 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAA 270 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHH
Confidence 88888899999999999888765542 2333221 112222111 12234455554444443 34443322 2234
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 037695 487 RGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK-GLVP-TVVTYRTVIHRYCQVGR 564 (701)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p-~~~~~~~l~~~~~~~g~ 564 (701)
.++.+.|+..++-.+++.+-+....|+. +.. ..+.+.|+. ++.-+++.... .++| +.++...+..+-...|+
T Consensus 271 ralf~d~~~rKg~~ilE~aWK~ePHP~i--a~l--Y~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e 344 (531)
T COG3898 271 RALFRDGNLRKGSKILETAWKAEPHPDI--ALL--YVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGE 344 (531)
T ss_pred HHHHhccchhhhhhHHHHHHhcCCChHH--HHH--HHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccc
Confidence 6677888888888888888775444443 222 223344543 22222222221 1233 46666677777778888
Q ss_pred HHHHHHHHHHHHhcCCChhHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC
Q 037695 565 VEDLLKLLEKMLSKQKCRTAYNQVIENLCSF-GYLEEAGKILGKVLRTASKA 615 (701)
Q Consensus 565 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~ 615 (701)
+..|..--+......|....|..|.+.-... |+-.++...+.+.++..-.|
T Consensus 345 ~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 345 FSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 8888777777777777777777777766544 88888888888877654444
No 240
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.06 E-value=1.2 Score=41.34 Aligned_cols=181 Identities=13% Similarity=0.078 Sum_probs=95.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhc
Q 037695 486 IRGFCQKGDLEEALSLLDDMYLCKK--DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKG-LVPTVVTYRTVIHRYCQV 562 (701)
Q Consensus 486 l~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~ 562 (701)
+..-.+.|++++|.+.|+.+..... +-...+.-.++.++.+.+++++|+...++.+..- -.||. .|..-+.+++.-
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~ 119 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYF 119 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHh
Confidence 3344566788888888887775421 1123455566667777788888888877777652 22332 233333333321
Q ss_pred -------CC---HHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695 563 -------GR---VEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI 632 (701)
Q Consensus 563 -------g~---~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 632 (701)
.+ ...|..-|++.+++.|+..- ...|..-+..+... =..--..++.-|.+.|.
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y-------------a~dA~~~i~~~~d~----LA~~Em~IaryY~kr~~ 182 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRY-------------APDAKARIVKLNDA----LAGHEMAIARYYLKRGA 182 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCCCcc-------------hhhHHHHHHHHHHH----HHHHHHHHHHHHHHhcC
Confidence 11 23455556666666665210 00111111100000 00000134566777888
Q ss_pred hhhHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 633 PLLAYKVACRMFNRNLIPD--LKLCKKVSERLILEGKSEEADTLMLRFVERGHI 684 (701)
Q Consensus 633 ~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 684 (701)
+..|..-++++++.-.... ...+..+..+|.+.|..++|...-.-+....++
T Consensus 183 ~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 183 YVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred hHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 8888888888877422211 145556667777788877777765444443333
No 241
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.01 E-value=0.1 Score=45.76 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=55.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCh------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 556 IHRYCQVGRVEDLLKLLEKMLSKQKCR------TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN 629 (701)
Q Consensus 556 ~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 629 (701)
.+-+.+.|++++|..-|..++..-|.. ..|..-+.++.+.+.++.|+.-..++++.++. ....+..-+.+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHh
Confidence 344566677777777777777665541 23344455666667777777777777665533 22222233446666
Q ss_pred cCChhhHHHHHHHHHhCCCCCCH
Q 037695 630 KGIPLLAYKVACRMFNRNLIPDL 652 (701)
Q Consensus 630 ~g~~~~A~~~~~~~~~~~~~p~~ 652 (701)
...+++|+.-|+++++ ..|..
T Consensus 181 ~ek~eealeDyKki~E--~dPs~ 201 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILE--SDPSR 201 (271)
T ss_pred hhhHHHHHHHHHHHHH--hCcch
Confidence 6667777777777766 44443
No 242
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.93 E-value=0.63 Score=45.05 Aligned_cols=227 Identities=12% Similarity=0.039 Sum_probs=144.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHH----HHHcC-CCCCHHHHHHHHHHHHh
Q 037695 384 LCHNGKSLEAREMINTSEEEW--WTPNAITYSVVMHGLRREGKLSEACDVVRE----MVKKG-FFPTPVEINLLIQSLCR 456 (701)
Q Consensus 384 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~----m~~~~-~~~~~~~~~~li~~~~~ 456 (701)
+....+.++|+..+......- ...-..+|..+..+.++.|.+++++..--. ..+.. -..--..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888888887766531 112234566677777888888776654322 22211 00112345556666666
Q ss_pred cCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----CCCHHHHHHHHHHHHhc
Q 037695 457 EGKMDGAKKFMQECLNK-GCAV---NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK-----DPDTVTYTTIIDALSKN 527 (701)
Q Consensus 457 ~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~ 527 (701)
.-++.+++.+-...... |..| .-...-++..++...+.++++++.|+...+... ......+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66666777666655543 2222 112334466778888899999999998775211 12345788999999999
Q ss_pred CCHHHHHHHHHHHHh----CCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhc---CCC----hhHHHHHHHH
Q 037695 528 GRVEEATELMMKMLS----KGLVPTVVTY-----RTVIHRYCQVGRVEDLLKLLEKMLSK---QKC----RTAYNQVIEN 591 (701)
Q Consensus 528 g~~~~A~~~~~~m~~----~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~ 591 (701)
.++++|.-+..+..+ .++..=..-| ..|.-++...|..-+|.+.-+++.+. ..+ ......++++
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999887766554 2332212223 33445677889888888888877654 233 2345678999
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 037695 592 LCSFGYLEEAGKILGKVLR 610 (701)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~ 610 (701)
|...|+.+.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 9999999999999988764
No 243
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.91 E-value=1.5 Score=41.08 Aligned_cols=200 Identities=24% Similarity=0.166 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695 444 PVEINLLIQSLCREGKMDGAKKFMQECLNK-GCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIID 522 (701)
Q Consensus 444 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 522 (701)
...+......+...+.+..+...+...... ........+......+...+++..+...+.........+ .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 344555555566666666666666555442 123344455555556666666677777777665533222 122222222
Q ss_pred -HHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCC
Q 037695 523 -ALSKNGRVEEATELMMKMLSKGL--VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGY 597 (701)
Q Consensus 523 -~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~ 597 (701)
++...|+++.|...+.+...... ......+......+...++.+.+...+..+....+. ...+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 56677777777777777654211 012333344444456677777777777777776655 4566677777777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 598 LEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 598 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
++.|...+..+...... ....+..+...+...|..+.+...+.+...
T Consensus 218 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888777765322 244455555555566667778777777777
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.90 E-value=0.16 Score=41.27 Aligned_cols=89 Identities=21% Similarity=0.147 Sum_probs=43.9
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--h---hHHHHHHHHHHhcCC
Q 037695 523 ALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC--R---TAYNQVIENLCSFGY 597 (701)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~---~~~~~l~~~~~~~g~ 597 (701)
+++..|+.+.|++.|.+.+.. .|-.+..|+.-..++.-+|+.++|+.-++++++.... . .+|-.-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344555555555555555543 2334555555555555555555555555555544221 1 122233344444555
Q ss_pred HHHHHHHHHHHHHcC
Q 037695 598 LEEAGKILGKVLRTA 612 (701)
Q Consensus 598 ~~~A~~~~~~~~~~~ 612 (701)
-+.|..-|+.+-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 555555555554444
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.47 Score=44.86 Aligned_cols=141 Identities=16% Similarity=0.087 Sum_probs=74.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhH--HHHHHHHHHhcCCHHH
Q 037695 523 ALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTA--YNQVIENLCSFGYLEE 600 (701)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~ 600 (701)
.....|++.+|..+|....... +-+......++.+|...|+++.|..++..+......... ...-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3456677777777777776653 333455566667777777777777777766554433211 1222334444433333
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcC
Q 037695 601 AGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLILEG 666 (701)
Q Consensus 601 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 666 (701)
...+-.+.-. + +-|...-..+...|...|+.+.|++.+-.+++++..- |...-..++..+.--|
T Consensus 222 ~~~l~~~~aa-d-Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAA-D-PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 3333333322 1 2245555566666777777777776665555532211 3344444555554444
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.88 E-value=1 Score=45.99 Aligned_cols=17 Identities=29% Similarity=0.180 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHcCCCCC
Q 037695 670 EADTLMLRFVERGHIQP 686 (701)
Q Consensus 670 ~A~~~~~~~~~~~~~~~ 686 (701)
.|.+.+.++++.+|-.|
T Consensus 364 ~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 46788888888887544
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.87 E-value=0.52 Score=49.66 Aligned_cols=175 Identities=17% Similarity=0.184 Sum_probs=95.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh----cCCHHH
Q 037695 428 ACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNV------VNFTSLIRGFCQ----KGDLEE 497 (701)
Q Consensus 428 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~----~g~~~~ 497 (701)
...+|.-++.. +|| .+..++....-.||-+.+.+.+....+.+.--.+ ..|+.++..++. ....+.
T Consensus 176 G~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~ 251 (468)
T PF10300_consen 176 GFGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEE 251 (468)
T ss_pred HHHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHH
Confidence 34455555544 233 3455666666778888888888776654211111 123333333332 345667
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 498 ALSLLDDMYLCKKDPDTVTYTTI-IDALSKNGRVEEATELMMKMLSK--GL-VPTVVTYRTVIHRYCQVGRVEDLLKLLE 573 (701)
Q Consensus 498 A~~~~~~~~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~--~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 573 (701)
|.+++..+.+. -|+...|... .+.+...|++++|++.|++.... .. ......+.-++..+.-..+|++|.+.|.
T Consensus 252 a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 252 AEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 77777777663 4555554433 34455677777777777765532 11 1123344455566667777777777777
Q ss_pred HHHhcCCC-hhHHHHHH-HHHHhcCCH-------HHHHHHHHHH
Q 037695 574 KMLSKQKC-RTAYNQVI-ENLCSFGYL-------EEAGKILGKV 608 (701)
Q Consensus 574 ~~~~~~p~-~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~ 608 (701)
.+.+.... ...|..+. .++...|+. ++|..++.++
T Consensus 330 ~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 330 RLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 77765544 33333332 233355666 5555555543
No 248
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.85 E-value=2.1 Score=42.31 Aligned_cols=101 Identities=25% Similarity=0.284 Sum_probs=46.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHH
Q 037695 522 DALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEA 601 (701)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 601 (701)
.-+...|+...|.++-.+. . .|+..-|...+.+++..++|++-.++... ++ ++.-|..++.+|.+.|+..+|
T Consensus 185 ~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK--sPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 185 RKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KK--SPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC--CCCChHHHHHHHHHCCCHHHH
Confidence 3334445554444443333 1 24455555555555555555554443321 11 123344455555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 037695 602 GKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVA 640 (701)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 640 (701)
..++.++ + + ..-+..|.++|++.+|.+.+
T Consensus 257 ~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 257 SKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHH
Confidence 5555441 1 1 12344455555555555443
No 249
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.80 E-value=2.1 Score=41.76 Aligned_cols=188 Identities=13% Similarity=0.070 Sum_probs=102.8
Q ss_pred hcC-CHHHHHHHHHHHHhC--------CCCCCH-----HHHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHH
Q 037695 491 QKG-DLEEALSLLDDMYLC--------KKDPDT-----VTYTTIIDALSKNGRVE---EATELMMKMLSKGLVPTVVTYR 553 (701)
Q Consensus 491 ~~g-~~~~A~~~~~~~~~~--------~~~p~~-----~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~ 553 (701)
..+ +++.|...+++..+. ...|+. .++..++.+|...+..+ +|..+++.+... .+-.+..+.
T Consensus 47 ~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~ 125 (278)
T PF08631_consen 47 SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFL 125 (278)
T ss_pred HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHH
Confidence 344 777776666554431 123332 35677778888777654 456666666544 233355555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH---
Q 037695 554 TVIHRYCQVGRVEDLLKLLEKMLSKQK-CRTAYNQVIENLCS--FGYLEEAGKILGKVLRTASKADAS--TCHVLVE--- 625 (701)
Q Consensus 554 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~--- 625 (701)
.-+..+.+.++.+.+.+.+.+|+..-+ ....+..++..+.. ......|...++.++...+.|... .-..++.
T Consensus 126 L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~ 205 (278)
T PF08631_consen 126 LKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVL 205 (278)
T ss_pred HHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 666777778889999999999987754 23444444444421 233456777777777666655553 1112222
Q ss_pred HHHhcCChh------hHHHHHHHHHh---CCCCCCH-----hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 626 SYLNKGIPL------LAYKVACRMFN---RNLIPDL-----KLCKKVSERLILEGKSEEADTLMLRFV 679 (701)
Q Consensus 626 ~~~~~g~~~------~A~~~~~~~~~---~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (701)
.....++.. ....++....+ ..+.+.. ......+..+.+.++|++|.++|+-..
T Consensus 206 ~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 206 LTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 112222222 22222332222 1222221 222334556678999999999998654
No 250
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.77 E-value=3.5 Score=46.72 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=91.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH----HHHHHHHhcCCHHHH
Q 037695 458 GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYT----TIIDALSKNGRVEEA 533 (701)
Q Consensus 458 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~----~li~~~~~~g~~~~A 533 (701)
++++.|+..+..+. ...|.-.++.-.++|.+.+|+.++ .|+...+. +....+...+.+++|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHH
Confidence 44555555444432 223333444445566666666654 45554444 444445566777787
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 534 TELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTA 612 (701)
Q Consensus 534 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (701)
.-.|+..-+ ...-+.+|..+|+|.+|+.+..++...... ...-..|+.-+...++.-+|-++..+...
T Consensus 959 al~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s-- 1027 (1265)
T KOG1920|consen 959 ALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS-- 1027 (1265)
T ss_pred HHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc--
Confidence 777766533 123456777888888888887766432111 22335677778888888888888877654
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 037695 613 SKADASTCHVLVESYLNKGIPLLAYKVACRMF 644 (701)
Q Consensus 613 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 644 (701)
.|. ..+..|++...+++|+.+.....
T Consensus 1028 -d~~-----~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1028 -DPE-----EAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred -CHH-----HHHHHHhhHhHHHHHHHHHHhcc
Confidence 222 23445667777788877765444
No 251
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.77 E-value=2.7 Score=42.89 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=46.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHCCCCCCHHHH
Q 037695 136 RYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRA-GKLRNAMYVLSMMQKAAVAPNLLIC 214 (701)
Q Consensus 136 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~ 214 (701)
.|+.|+..|..-+..+-+.+.+.....+|.+|...+ +.++..|-.-....... -+++.|..+|....+.+ +.++..|
T Consensus 100 rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw 177 (568)
T KOG2396|consen 100 RFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLW 177 (568)
T ss_pred hcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHH
Confidence 456677777777777777777777777777776653 33555555444433332 34667777776666554 3333344
Q ss_pred H
Q 037695 215 N 215 (701)
Q Consensus 215 ~ 215 (701)
.
T Consensus 178 ~ 178 (568)
T KOG2396|consen 178 K 178 (568)
T ss_pred H
Confidence 3
No 252
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.76 E-value=0.69 Score=40.89 Aligned_cols=93 Identities=15% Similarity=0.121 Sum_probs=60.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 037695 588 VIENLCSFGYLEEAGKILGKVLRTASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILE 665 (701)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 665 (701)
++..+...|++++|...++..+......+ ..+--.|.......|.+++|+..+......++. ......-++++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHc
Confidence 45566677888888877777664322111 112233556677778888888777766554332 23455567788888
Q ss_pred CCHHHHHHHHHHHHHcC
Q 037695 666 GKSEEADTLMLRFVERG 682 (701)
Q Consensus 666 g~~~~A~~~~~~~~~~~ 682 (701)
|+.++|+.-|+++++.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888888888876
No 253
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.70 E-value=0.14 Score=44.39 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHH-----HcCCCCCHHHH
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVL-----RTASKADASTC 620 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~ 620 (701)
+...++..+...|++++|..+.++++..+|. ...+..++.+|...|+..+|.++|+++. +.|..|++.+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 3455666677788888888888888888877 5677888888888888888888887763 34667776553
No 254
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.64 E-value=4.3 Score=44.24 Aligned_cols=119 Identities=15% Similarity=0.195 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037695 143 VYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMV----AYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAI 218 (701)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 218 (701)
....-+..+.+...++-|..+.. ..+ .++.+...+.. .+.+.|++++|...|-+.+..- .| ..++
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~-----s~Vi 404 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EP-----SEVI 404 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-Ch-----HHHH
Confidence 34556677777777777776643 222 34444444444 3446788888888776655321 22 2345
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHch
Q 037695 219 HVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMP 273 (701)
Q Consensus 219 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 273 (701)
.-|....+...-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-.
T Consensus 405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 5556666666667777888777753 55566778888888888888777776655
No 255
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.64 E-value=0.93 Score=38.81 Aligned_cols=131 Identities=11% Similarity=0.108 Sum_probs=82.4
Q ss_pred hcCCCHHHHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695 103 LRSLKPRQICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYL 182 (701)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 182 (701)
.....++.++..+...+.+...+.+.+++.... +.++..++.++..+++.. .......+.. . .+......+
T Consensus 5 ~~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~ 75 (140)
T smart00299 5 SDPIDVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKV 75 (140)
T ss_pred CCcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHH
Confidence 345667778888877788889999988887664 467778888888888753 3333333331 1 233445557
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 037695 183 MVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVG-NKLAKALRFLERMQLAGITPNVLTYNCLIKGYC 257 (701)
Q Consensus 183 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 257 (701)
+..|.+.+.++++..++.++.. +...+..+... ++++.|.+.+.+ ..+...|..++..+.
T Consensus 76 ~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l 136 (140)
T smart00299 76 GKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 7777777777777777776531 33344444444 667777766664 124456666665554
No 256
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=4.1 Score=43.79 Aligned_cols=323 Identities=14% Similarity=0.123 Sum_probs=180.3
Q ss_pred cCCCcCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCC
Q 037695 333 MGCIPDVVTYT-----AVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKS---LEAREMINTSEEEW 404 (701)
Q Consensus 333 ~~~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~ 404 (701)
-|++.+..-|. .+|+-+...+.+..|+++-+.+...-.. +...|.....-+.+..+. +-+.++-+++...
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~- 503 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK- 503 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence 35665555443 3566677788889998888776542211 145666666666665322 2222233333221
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------
Q 037695 405 WTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGF----FPTPVEINLLIQSLCREGKMDGAKKFMQECLNKG------ 474 (701)
Q Consensus 405 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------ 474 (701)
. .....|..+...-...|+.+-|..+++.=...+. -.+..-+...+.-+.+.|+.+....++..+...-
T Consensus 504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 2 4456677777777788998888877763211110 0011223455556667777777766666554431
Q ss_pred -----CCCCHHHHHHHHH--------HHHhcCCHHHHHHHHH--HHHhC-CCCCCHHHHHHHHHHHHhcCCHH---HH--
Q 037695 475 -----CAVNVVNFTSLIR--------GFCQKGDLEEALSLLD--DMYLC-KKDPDTVTYTTIIDALSKNGRVE---EA-- 533 (701)
Q Consensus 475 -----~~~~~~~~~~ll~--------~~~~~g~~~~A~~~~~--~~~~~-~~~p~~~~~~~li~~~~~~g~~~---~A-- 533 (701)
.+.....|..+++ .+.+.++-..++..|. ..... -+.+-.........+|.+..... +|
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 1111222222221 1111222222222211 10000 01122222334445555544321 11
Q ss_pred -----HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 534 -----TELMMKMLSK-GLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGK 607 (701)
Q Consensus 534 -----~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 607 (701)
+.+.+.+..+ |..-...+.+--+.-+...|+..+|.++-.+.. -|+...|-.-+.+++..+++++-.++-+.
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk--ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK--IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC--CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 2222222222 333344455566677788899999988877663 46777787788899999999998877765
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 037695 608 VLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLM 675 (701)
Q Consensus 608 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 675 (701)
. ..|.-|.-++.+|.+.|+.++|.+++-+.-. .. ....+|.+.|++.+|.++-
T Consensus 741 k------ksPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 741 K------KSPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred c------CCCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 3 2366677788999999999999988754432 11 4667889999999988654
No 257
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=5.2 Score=43.62 Aligned_cols=153 Identities=12% Similarity=0.073 Sum_probs=99.6
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHH----cC------------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC
Q 037695 143 VYYMMLEILSKTKLCQGAKRVLRLMAR----RG------------IECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAA 206 (701)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~------------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 206 (701)
..++++.++...+++-.-.-++..+.. .+ ..........-+..+.+...+.-|+.+-+.-
T Consensus 285 s~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~---- 360 (933)
T KOG2114|consen 285 SSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ---- 360 (933)
T ss_pred chhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc----
Confidence 456777777777776554444443322 22 1123345566777778888888888776553
Q ss_pred CCCCHHHHHHHH----HHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHH
Q 037695 207 VAPNLLICNTAI----HVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKV 282 (701)
Q Consensus 207 ~~~~~~~~~~ll----~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 282 (701)
..+..+...+. ..+.+.|+++.|...|-+-... +.| ..+|.-|....+...-..+++.+.+.|+. +..
T Consensus 361 -~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~d 432 (933)
T KOG2114|consen 361 -HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSD 432 (933)
T ss_pred -CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cch
Confidence 23333344444 4445789999999887765533 233 24556677777777778888888888865 555
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHH
Q 037695 283 SYYTVMGYLCKEKRIKEVRDLMEKM 307 (701)
Q Consensus 283 ~~~~ll~~~~~~g~~~~a~~~~~~~ 307 (701)
.-..|+.+|.+.++.+...++.+..
T Consensus 433 httlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 433 HTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred hHHHHHHHHHHhcchHHHHHHHhcC
Confidence 5678899999999988777766554
No 258
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.31 E-value=0.49 Score=39.33 Aligned_cols=51 Identities=16% Similarity=0.158 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 037695 510 KDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK-GLVPTVVTYRTVIHRYC 560 (701)
Q Consensus 510 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~ 560 (701)
..|+..+..+++.+|+..|++..|+++.+...+. +++.+...|..|+.-+.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4566777777777777777777777777766654 56666666666665443
No 259
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.24 E-value=0.047 Score=35.62 Aligned_cols=30 Identities=17% Similarity=0.371 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037695 552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC 581 (701)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 581 (701)
+..+..+|.+.|++++|+++|+++++..|+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 344445555555555555555555555544
No 260
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.24 E-value=0.23 Score=41.29 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=44.3
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh
Q 037695 333 MGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYH-HGCKPNTVSYTAFLNGLCH 386 (701)
Q Consensus 333 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~ 386 (701)
....|+..+..+++.+|+..+++..|+++++...+ .+++.+...|..|+.-...
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999999999998876 4577778888888875443
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.18 E-value=1.8 Score=44.24 Aligned_cols=59 Identities=17% Similarity=0.266 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC---RTAYNQVIENLCSFGYLEEAGKILGKV 608 (701)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 608 (701)
.+-..+..++.+.|+.++|++.++++.+..|. ..+...|+.+|...+.+.++..++.+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 33344555666667777777777776665544 234456666666677777776666664
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=3.3 Score=39.40 Aligned_cols=142 Identities=18% Similarity=0.167 Sum_probs=74.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037695 488 GFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVED 567 (701)
Q Consensus 488 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 567 (701)
.....|++.+|..+|....... +-+...-..++.+|...|+.+.|..++..+-..--.........-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 3445666666666666666532 222344455666667777777777776665433211112222223344444444444
Q ss_pred HHHHHHHHHhcCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC
Q 037695 568 LLKLLEKMLSKQK-CRTAYNQVIENLCSFGYLEEAGKILGKVLRTAS-KADASTCHVLVESYLNKG 631 (701)
Q Consensus 568 A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 631 (701)
...+-.+.- .+| +...-..++..|...|+.++|...+-.+++.+. --|...-..|+..+..-|
T Consensus 222 ~~~l~~~~a-adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLA-ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444433333 344 356666677777777777777776666655422 123333444444444444
No 263
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.98 E-value=2 Score=36.66 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=37.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037695 484 SLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG 563 (701)
Q Consensus 484 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 563 (701)
.++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+....+.. . .+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcC
Confidence 34444445555555555555555443 234445555555555432 2222232221 0 11122233445555555
Q ss_pred CHHHHHHHHHHH
Q 037695 564 RVEDLLKLLEKM 575 (701)
Q Consensus 564 ~~~~A~~~~~~~ 575 (701)
.++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555443
No 264
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.88 E-value=0.11 Score=33.83 Aligned_cols=39 Identities=21% Similarity=0.326 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695 584 AYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVL 623 (701)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 623 (701)
++..++..|...|++++|+++|+++++..+. |+..+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 4455555666666666666666666555432 44444333
No 265
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.68 E-value=2.1 Score=37.08 Aligned_cols=121 Identities=10% Similarity=0.056 Sum_probs=56.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHH-----HHHHHhcCCH
Q 037695 525 SKNGRVEEATELMMKMLSKGLVPTVV-TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQV-----IENLCSFGYL 598 (701)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l-----~~~~~~~g~~ 598 (701)
.+.+..++|+.-|..+.+.|...-+. ............|+-..|...|+++-...|.+.....+ ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44555566666666655554322111 11122233445566666666666665554443333222 2334455555
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 599 EEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 599 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+....-.+-+-..+.+.-...-..|+-+-.+.|++..|.+.|..+..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 55555544443222222223334455555555666666655555554
No 266
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.66 E-value=8 Score=41.97 Aligned_cols=178 Identities=16% Similarity=0.122 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHH----HH-HHhcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhc
Q 037695 320 IEEAKELVNQMSQMGCIPDVVTYTAVV----NG-FCRVGELDQAKKMLQQMYH-------HGCKPNTVSYTAFLNGLCHN 387 (701)
Q Consensus 320 ~~~a~~~~~~~~~~~~~p~~~~~~~li----~~-~~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~ 387 (701)
...|..+++...+.| +...-..+. .+ +....+++.|+.+|+.+.. .| .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456666666666654 222222222 22 4456788888888888876 44 333455555566553
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hc
Q 037695 388 G-----KSLEAREMINTSEEEWWTPNAITYSVVMHGLRR-EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLC----RE 457 (701)
Q Consensus 388 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~----~~ 457 (701)
. +...|..++......| .|+...+...+..... ..+...|.++|....+.|.. ..+-.+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 2 5566777777777665 3444333222222222 23566777777777777632 12222222221 23
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037695 458 GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCK 509 (701)
Q Consensus 458 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 509 (701)
.+...|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+...|
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 35666777777766665 2221211222223333 55555555555555444
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.61 E-value=2.5 Score=36.59 Aligned_cols=133 Identities=8% Similarity=-0.011 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hh--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHH--
Q 037695 549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RT--AYNQVIENLCSFGYLEEAGKILGKVLRTASKADAS-TCHV-- 622 (701)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~-- 622 (701)
...|..-++ +.+.++.++|+.-|..+.+.+-. -+ +...........|+...|...|+++-.....|.+. -...
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 334444433 45678899999999998877533 22 33445667788999999999999997765555443 1111
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 623 LVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
-...+.-+|.++......+-+...+-......-..|+-+-.+.|++.+|.++|..+....
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da 197 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA 197 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence 234566778888766666555443222234666777778889999999999999998744
No 268
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.60 E-value=3.7 Score=37.81 Aligned_cols=53 Identities=17% Similarity=0.076 Sum_probs=23.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCC-C-CC-CHhhHHHHHHHHHhcCCHHHHHHHH
Q 037695 622 VLVESYLNKGIPLLAYKVACRMFNRN-L-IP-DLKLCKKVSERLILEGKSEEADTLM 675 (701)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 675 (701)
..|-.|+...++..|..+++...+.+ + .| +..+...|+.+|- .|+.+++..++
T Consensus 195 a~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 195 AAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 33444455555555555555433311 1 11 2244444544442 45555555443
No 269
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=1.3 Score=42.49 Aligned_cols=153 Identities=16% Similarity=0.139 Sum_probs=92.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHH
Q 037695 421 REGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK---GCAVNVVNFTSLIRGFCQKGDLEE 497 (701)
Q Consensus 421 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~~ 497 (701)
..|+..+|...++++++. .|.|...+...=.+|.-.|+...-...++++... +.|..+..-..+.-++..+|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 456677777777777765 3556666666677777778777777777776554 222222223334445567788888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 498 ALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK---GLVPTVVTYRTVIHRYCQVGRVEDLLKLLEK 574 (701)
Q Consensus 498 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 574 (701)
|.+.-++..+.+ +-|.-.-.+....+...|++.++.++..+-... +--.-...|-...-.+...+.++.|+++|++
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 888877776643 334555566667777778888887766554332 1011112233334445566778888888874
Q ss_pred H
Q 037695 575 M 575 (701)
Q Consensus 575 ~ 575 (701)
-
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
No 270
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.50 E-value=0.83 Score=47.44 Aligned_cols=128 Identities=17% Similarity=0.165 Sum_probs=74.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 037695 111 ICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAG 190 (701)
Q Consensus 111 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 190 (701)
+++.|..+|-++.|++|- .|+. .-.....+.|+++.|.++..+. .++..|..|.....+.|
T Consensus 301 i~~fL~~~G~~e~AL~~~----------~D~~---~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g 361 (443)
T PF04053_consen 301 IARFLEKKGYPELALQFV----------TDPD---HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQG 361 (443)
T ss_dssp HHHHHHHTT-HHHHHHHS----------S-HH---HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHhhc----------CChH---HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcC
Confidence 556666677777777762 2221 2334455667777666654322 36667777777777777
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHH
Q 037695 191 KLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLID 270 (701)
Q Consensus 191 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 270 (701)
+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+.....| -+|....++.-.|+++++.++|.
T Consensus 362 ~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 362 NIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp BHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777777542 5566666667777766666666665544 14444555555677777666665
Q ss_pred Hc
Q 037695 271 EM 272 (701)
Q Consensus 271 ~m 272 (701)
+-
T Consensus 427 ~~ 428 (443)
T PF04053_consen 427 ET 428 (443)
T ss_dssp HT
T ss_pred Hc
Confidence 43
No 271
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.34 E-value=1.5 Score=38.89 Aligned_cols=91 Identities=21% Similarity=0.178 Sum_probs=58.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHh
Q 037695 521 IDALSKNGRVEEATELMMKMLSKGLVPTV-----VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCS 594 (701)
Q Consensus 521 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~ 594 (701)
..-+.+.|++++|..-|...+.. +++.. ..|..-..++.+.+.++.|+.--.++++.+|. ..++..-+.+|-+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence 44566777777777777777764 23322 22333345566777777777777777777776 4444555666777
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 037695 595 FGYLEEAGKILGKVLRTA 612 (701)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~ 612 (701)
..++++|+.-|+++++..
T Consensus 181 ~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhHHHHHHHHHHHHHhC
Confidence 777777777777777654
No 272
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.16 E-value=4.5 Score=37.02 Aligned_cols=180 Identities=15% Similarity=0.111 Sum_probs=90.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCH-HHHHHHHHHHHhcC
Q 037695 454 LCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMY----LCKKDPDT-VTYTTIIDALSKNG 528 (701)
Q Consensus 454 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~p~~-~~~~~li~~~~~~g 528 (701)
+.-.+.+++|..+|.+... +|--..+|..|=..|.+.- +.|-+.|. .+|....++| +.+
T Consensus 24 fgg~~k~eeAadl~~~Aan---------------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~ 87 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAAN---------------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKV 87 (288)
T ss_pred cCCCcchHHHHHHHHHHHH---------------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hcc
Confidence 3445577778777765432 2223333444433333322 23333333 3455555544 455
Q ss_pred CHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhc
Q 037695 529 RVEEATELMMKMLSK----G-LVPTVVTYRTVIHRYCQV-GRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSF 595 (701)
Q Consensus 529 ~~~~A~~~~~~m~~~----~-~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~ 595 (701)
++.+|...++..++. | +..-...+..+...|-.. .+++.|+..|+..-.-... ...+-.++..-...
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~l 167 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQL 167 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHH
Confidence 888888888877652 1 111111223344444433 5677777777776654322 11122233333466
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHH---HHH-H--HHhcCChhhHHHHHHHHHhCCCCCC
Q 037695 596 GYLEEAGKILGKVLRTASKADASTCHV---LVE-S--YLNKGIPLLAYKVACRMFNRNLIPD 651 (701)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~~~~~~~~~---l~~-~--~~~~g~~~~A~~~~~~~~~~~~~p~ 651 (701)
+++.+|+.+|+++.......+..-|.. ++. + ++-.++.-.+...+++..+ ..|+
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~--~dP~ 227 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE--LDPA 227 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh--cCCc
Confidence 888888888888877655434333322 111 1 2222455555556666666 4454
No 273
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.12 E-value=2.8 Score=34.49 Aligned_cols=136 Identities=16% Similarity=0.200 Sum_probs=67.4
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHH
Q 037695 526 KNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGK 603 (701)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 603 (701)
-.|.+++..++..+.... .+..-++.++--....-+=+-..+.++.+-+.... -.....++.+|+..|..
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~----- 85 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKL----- 85 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT-------
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcch-----
Confidence 456666666666666553 23444444443333333444444444444332211 11223344444444432
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 604 ILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
.......+..+.++|.-+.--+++..+.+ +-.|++...-.++.+|.+.|+..+|.+++.++-++|.
T Consensus 86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 22233344556667776666666666654 3456677777788888888888888888888888774
No 274
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.98 E-value=0.49 Score=44.11 Aligned_cols=105 Identities=9% Similarity=0.093 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 037695 442 PTPVEINLLIQSLCR-----EGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVT 516 (701)
Q Consensus 442 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 516 (701)
-|..+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+.. +.|...
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~nv- 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQNV- 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHHH-
Confidence 345556555555543 3455666666666777777777777777766554322 112111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 037695 517 YTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRV 565 (701)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 565 (701)
+....-.|- .+-+=++.++++|...|+.||.++-..|++++.+.+-.
T Consensus 128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 111111121 12234788999999999999999999999999887653
No 275
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.87 E-value=0.5 Score=44.06 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=15.0
Q ss_pred HHHHHHHchhCCCCCCHHHHHHHHHHHHHcC
Q 037695 265 AIKLIDEMPLKGCSPDKVSYYTVMGYLCKEK 295 (701)
Q Consensus 265 A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g 295 (701)
+++++++|...|+.||..+-..|+.++.+.+
T Consensus 142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred HHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 4444455554455555544444444444443
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.87 E-value=8.4 Score=39.11 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=41.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695 478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDP---DTVTYTTIIDALSKNGRVEEATELMMKMLS 542 (701)
Q Consensus 478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 542 (701)
...+|..++..+.+.|.++.|...+..+...+... .+...-.-++.+...|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777777778888888888777776533111 223333344555667777777777776666
No 277
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.84 E-value=2.2 Score=44.31 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=34.4
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695 489 FCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDL 568 (701)
Q Consensus 489 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A 568 (701)
..+.|+++.|.++.++. ++...|..|.......|+++-|.+.|.+..+ +..|+-.|.-.|+.+.-
T Consensus 328 Al~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHH
Confidence 34455555555543322 2444555555555555555555555554322 33344444555555544
Q ss_pred HHHHHHHHh
Q 037695 569 LKLLEKMLS 577 (701)
Q Consensus 569 ~~~~~~~~~ 577 (701)
.++.+.+..
T Consensus 393 ~kl~~~a~~ 401 (443)
T PF04053_consen 393 SKLAKIAEE 401 (443)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 278
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.73 E-value=0.074 Score=32.30 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=12.2
Q ss_pred HHHhcCCC-hhHHHHHHHHHHhcCCHHHH
Q 037695 574 KMLSKQKC-RTAYNQVIENLCSFGYLEEA 601 (701)
Q Consensus 574 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 601 (701)
++++.+|+ ..+|..++..|...|++++|
T Consensus 4 kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 4 KAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 33444444 34444444444444444444
No 279
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.57 E-value=7.9 Score=37.89 Aligned_cols=134 Identities=14% Similarity=0.219 Sum_probs=74.2
Q ss_pred HhHHHHHHHHHHhCCCCCChHHHHHHHHHHHh--cC----ChhHHHHHHHHchhCC---CCCCHHHHHHHHHHHHHcCCh
Q 037695 227 LAKALRFLERMQLAGITPNVLTYNCLIKGYCD--LH----RIKDAIKLIDEMPLKG---CSPDKVSYYTVMGYLCKEKRI 297 (701)
Q Consensus 227 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~g----~~~~A~~~~~~m~~~g---~~pd~~~~~~ll~~~~~~g~~ 297 (701)
++..+.+++.|.+.|+..+.++|-+..-.... .. ....|..+|+.|++.- -.++..++..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~- 154 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED- 154 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc-
Confidence 34456778888888888887776653333322 22 3457888999998763 23455566666533 2222
Q ss_pred hHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCC
Q 037695 298 KEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDV--VTYTAVVNGFCRVGE--LDQAKKMLQQMYHHGCKPN 373 (701)
Q Consensus 298 ~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~--~~~a~~~~~~~~~~~~~~~ 373 (701)
...+. +.+..+++.+...|+..+. ...+.++..+..... ...+..+++.+.+.|+++.
T Consensus 155 --~e~l~----------------~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik 216 (297)
T PF13170_consen 155 --VEELA----------------ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIK 216 (297)
T ss_pred --HHHHH----------------HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccc
Confidence 22222 3444566666666655432 233333332222222 3467777777777777776
Q ss_pred HHHHHHHH
Q 037695 374 TVSYTAFL 381 (701)
Q Consensus 374 ~~~~~~li 381 (701)
...|..+.
T Consensus 217 ~~~yp~lG 224 (297)
T PF13170_consen 217 YMHYPTLG 224 (297)
T ss_pred cccccHHH
Confidence 66655443
No 280
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.47 E-value=3.7 Score=33.79 Aligned_cols=56 Identities=14% Similarity=0.256 Sum_probs=20.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695 521 IDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLS 577 (701)
Q Consensus 521 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 577 (701)
+..+...|+-+.-.+++..+.+.+ .+++.....+..+|.+.|+..++-+++.++-+
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 333344444444444444433321 33444444444444444444444444444433
No 281
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.40 E-value=12 Score=39.43 Aligned_cols=115 Identities=7% Similarity=-0.026 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCChhHHHHHHH
Q 037695 122 RVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYS-RAGKLRNAMYVLS 200 (701)
Q Consensus 122 ~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~ 200 (701)
+.+...+.-.... +|.--..|......-.+.|..+.+.++|++-+.. ++.+...|......+. ..|+......+|+
T Consensus 62 ~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 62 DALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 3444444433333 3444456777778888888888888888887753 6677777777766554 4467777777887
Q ss_pred HHHHC-CC-CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 037695 201 MMQKA-AV-APNLLICNTAIHVLVVGNKLAKALRFLERMQL 239 (701)
Q Consensus 201 ~~~~~-~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 239 (701)
.+... |. -.+...|-..|..-..++++.....+++++++
T Consensus 139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 77643 21 23445677777777777888888888888875
No 282
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.36 E-value=5.5 Score=35.43 Aligned_cols=88 Identities=14% Similarity=0.029 Sum_probs=37.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695 557 HRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI 632 (701)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 632 (701)
..+...|++++|...++..+....+ ..+--.|++.....|.+++|...++.....+. .+.....-+..+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~ 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGD 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCc
Confidence 3344455555555555544432211 11122344444555555555555544322110 11112223445555555
Q ss_pred hhhHHHHHHHHHhC
Q 037695 633 PLLAYKVACRMFNR 646 (701)
Q Consensus 633 ~~~A~~~~~~~~~~ 646 (701)
.++|+.-|++.+..
T Consensus 175 k~~Ar~ay~kAl~~ 188 (207)
T COG2976 175 KQEARAAYEKALES 188 (207)
T ss_pred hHHHHHHHHHHHHc
Confidence 55555555555553
No 283
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.30 E-value=6.7 Score=36.21 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=25.7
Q ss_pred CcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 318 GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMY 366 (701)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 366 (701)
..++.|.-+.+++.+. +--+..|+-....|..+|..+.|-..+++.-
T Consensus 72 KayEqaamLake~~kl--sEvvdl~eKAs~lY~E~GspdtAAmaleKAa 118 (308)
T KOG1585|consen 72 KAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPDTAAMALEKAA 118 (308)
T ss_pred HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 3344455555555442 1223455666667777777776666665544
No 284
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.24 E-value=0.76 Score=40.15 Aligned_cols=42 Identities=19% Similarity=0.136 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 633 PLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 633 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
+++|..+|+++.+ ..|+..+|..-+... .+|-++..++.+++
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 4556666666666 677777777655443 23555555555554
No 285
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.05 E-value=0.15 Score=30.94 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=17.6
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 037695 605 LGKVLRTASKADASTCHVLVESYLNKGIPLLAY 637 (701)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 637 (701)
|+++++..+. ++..|+.++..|...|++++|+
T Consensus 2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence 3444444422 5566666666666666666554
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.88 E-value=5.7 Score=34.29 Aligned_cols=50 Identities=14% Similarity=0.000 Sum_probs=25.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 561 QVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLR 610 (701)
Q Consensus 561 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 610 (701)
+.++.+++..++..+.-..|. +..-..-+..+...|++.+|..+|+.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 445555555555555555555 22223334445555555555555555543
No 287
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.87 E-value=8.2 Score=36.06 Aligned_cols=191 Identities=13% Similarity=0.122 Sum_probs=113.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHHhcC
Q 037695 492 KGDLEEALSLLDDMYLCKKDPD---TVTYTTIIDALSKNGRVEEATELMMKMLSK---GL--VPTVVTYRTVIHRYCQVG 563 (701)
Q Consensus 492 ~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~g 563 (701)
..++++|+.-|++..+.....- ......++..+.+.+++++....|.+|... .+ .-+..+.+.+++..+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 3466777777777665321111 223445667777777777777777776542 11 123455677777666666
Q ss_pred CHHHHHHHHHHHHhc---CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----C-------CHHHHHHHHH
Q 037695 564 RVEDLLKLLEKMLSK---QKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK----A-------DASTCHVLVE 625 (701)
Q Consensus 564 ~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~-------~~~~~~~l~~ 625 (701)
+.+...++++.-+.. ..+ ..+-..|+..|...|.+.+-.++++++...... . =..+|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666666666544322 111 223356777777777777777777766433111 1 1245666778
Q ss_pred HHHhcCChhhHHHHHHHHHh-CCCCCCHhhHHHH----HHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 626 SYLNKGIPLLAYKVACRMFN-RNLIPDLKLCKKV----SERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
+|..+.+-..-..+|++.+. +...|.+-+...+ +....+.|.|++|-.-|-++.+.+
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNY 261 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 261 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcc
Confidence 88888877777777877766 3445555333322 344567888888877666666554
No 288
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.83 E-value=0.21 Score=29.86 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=23.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 655 CKKVSERLILEGKSEEADTLMLRFVERGHI 684 (701)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 684 (701)
+-.++.++.+.|++++|.++|+++++..|.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445777888888888888888888887764
No 289
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.69 E-value=0.42 Score=45.75 Aligned_cols=94 Identities=11% Similarity=0.006 Sum_probs=65.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 037695 556 IHRYCQVGRVEDLLKLLEKMLSKQK-CRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPL 634 (701)
Q Consensus 556 ~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 634 (701)
.+-|.++|++++|+..|.+.+...| ++..+..-+.+|.+..++..|..-...++.++ +.=...|..-+.+-...|...
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhHH
Confidence 4567788888888888888887777 46667777778888888887777777666543 212334555555555667777
Q ss_pred hHHHHHHHHHhCCCCCCH
Q 037695 635 LAYKVACRMFNRNLIPDL 652 (701)
Q Consensus 635 ~A~~~~~~~~~~~~~p~~ 652 (701)
+|.+-++..+. +.|+.
T Consensus 183 EAKkD~E~vL~--LEP~~ 198 (536)
T KOG4648|consen 183 EAKKDCETVLA--LEPKN 198 (536)
T ss_pred HHHHhHHHHHh--hCccc
Confidence 77777777777 66664
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.69 E-value=0.27 Score=30.27 Aligned_cols=25 Identities=12% Similarity=0.062 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 655 CKKVSERLILEGKSEEADTLMLRFV 679 (701)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (701)
+..++.+|.+.|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5678888888888888888888854
No 291
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.46 E-value=0.28 Score=29.59 Aligned_cols=26 Identities=23% Similarity=0.160 Sum_probs=10.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 656 KKVSERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
..++.+|...|++++|+..|+++++.
T Consensus 5 ~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 5 YNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 33444444444444444444444443
No 292
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.36 E-value=0.41 Score=28.78 Aligned_cols=30 Identities=17% Similarity=0.051 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 654 LCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
.+..++.++...|++++|++.|+++++..|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 445566666666666666666666666554
No 293
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.28 E-value=6.4 Score=33.98 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=29.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCChh
Q 037695 526 KNGRVEEATELMMKMLSKGLVPTVVT-YRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRT 583 (701)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 583 (701)
+.++.+++..++.-+.-. .|.... -..-...+...|++.+|+++|+.+....|..+
T Consensus 22 ~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred ccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 455666666666666553 333222 22223345566666666666666665555433
No 294
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=92.10 E-value=1.1 Score=43.07 Aligned_cols=94 Identities=20% Similarity=0.098 Sum_probs=73.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCH
Q 037695 520 IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYL 598 (701)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 598 (701)
-..-|.+.|++++|+..|..-+... +-+++++..-..+|.+...+..|..-...++..+.. ..+|..-+.+-...|+.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 3567889999999999999887742 338888888899999999999888888777765533 45666666666677889
Q ss_pred HHHHHHHHHHHHcCCC
Q 037695 599 EEAGKILGKVLRTASK 614 (701)
Q Consensus 599 ~~A~~~~~~~~~~~~~ 614 (701)
.+|.+-++.++++.+.
T Consensus 182 ~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHhHHHHHhhCcc
Confidence 9999999998886543
No 295
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.95 E-value=0.45 Score=28.67 Aligned_cols=30 Identities=23% Similarity=0.424 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQK 580 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 580 (701)
+|..+..+|...|++++|+..|+++++.+|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 344444444455555555555555444443
No 296
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.91 E-value=13 Score=36.20 Aligned_cols=20 Identities=15% Similarity=-0.002 Sum_probs=13.1
Q ss_pred HHHHhcCCHHHHHHHHHHHH
Q 037695 590 ENLCSFGYLEEAGKILGKVL 609 (701)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~~~ 609 (701)
..+.+.+++++|..+|+-.+
T Consensus 254 ~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 254 KKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHhhcCHHHHHHHHHHHH
Confidence 34456677777777776544
No 297
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.69 E-value=30 Score=39.83 Aligned_cols=102 Identities=22% Similarity=0.338 Sum_probs=54.1
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHH
Q 037695 455 CREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTV--TYTTIIDALSKNGRVEE 532 (701)
Q Consensus 455 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~~~g~~~~ 532 (701)
.....+++|--.|+..-+. ..-+.+|..+|+|.+|+.+..++.. ..+.. +-..|+.-+...+++-+
T Consensus 950 ~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~e 1017 (1265)
T KOG1920|consen 950 REELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYE 1017 (1265)
T ss_pred HHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchh
Confidence 3445555555555543221 1235556666666666666665531 11211 12455566666777777
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 533 ATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKML 576 (701)
Q Consensus 533 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 576 (701)
|-++..+..+. | ...+..|++...|++|+++.....
T Consensus 1018 Aa~il~e~~sd---~-----~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1018 AAKILLEYLSD---P-----EEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHHhcC---H-----HHHHHHHhhHhHHHHHHHHHHhcc
Confidence 77766665542 1 223445666667777776665544
No 298
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.61 E-value=0.39 Score=29.57 Aligned_cols=27 Identities=15% Similarity=-0.009 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 619 TCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+|..|+..|...|++++|+.+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356777888888888888888887553
No 299
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.44 E-value=2.1 Score=40.90 Aligned_cols=60 Identities=15% Similarity=0.248 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVL 609 (701)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 609 (701)
.++..++..+...|+++.+.+.+++....+|. ...|..++.+|.+.|+...|+..|+++.
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 34555555555566666666666666655555 4555566666666666666666555543
No 300
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.39 E-value=2.6 Score=37.94 Aligned_cols=87 Identities=14% Similarity=0.032 Sum_probs=58.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHH
Q 037695 524 LSKNGRVEEATELMMKMLSKGLVPT-VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEA 601 (701)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 601 (701)
|-..|-+.-|.--|.+... +.|+ +..|+.+.--+...|+++.|.+.|+...+.+|. ..+...-+-.+.--|+++-|
T Consensus 75 YDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhh
Confidence 5555666666666666655 4454 666777777777888888888888888888876 33333334444556888888
Q ss_pred HHHHHHHHHcC
Q 037695 602 GKILGKVLRTA 612 (701)
Q Consensus 602 ~~~~~~~~~~~ 612 (701)
.+-+.+.-+..
T Consensus 153 q~d~~~fYQ~D 163 (297)
T COG4785 153 QDDLLAFYQDD 163 (297)
T ss_pred HHHHHHHHhcC
Confidence 77776665544
No 301
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=91.33 E-value=27 Score=38.63 Aligned_cols=173 Identities=14% Similarity=0.139 Sum_probs=87.6
Q ss_pred HHHHHHHHHH-HcCChhHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHccCCHhHHHHHHHHHHhC----CCCCChH
Q 037695 178 AFSYLMVAYS-RAGKLRNAMYVLSMMQKAAVAPNLL-----ICNTAIHVLVVGNKLAKALRFLERMQLA----GITPNVL 247 (701)
Q Consensus 178 ~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~g~~~~A~~~~~~m~~~----g~~~~~~ 247 (701)
++-.+...+. ...+++.|...+++.....-.++.. +...++..+.+.+... |...+++..+. +..+-..
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 3444555544 4567777777777665332222221 2223445555555444 77777665432 2222233
Q ss_pred HHHHH-HHHHHhcCChhHHHHHHHHchhCC---CCCCHHHHHHHHHHHHH--cCChhHHHHHHHHHHhcCCCCCCCCcHH
Q 037695 248 TYNCL-IKGYCDLHRIKDAIKLIDEMPLKG---CSPDKVSYYTVMGYLCK--EKRIKEVRDLMEKMVNDSNLFHDQGRIE 321 (701)
Q Consensus 248 ~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~pd~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~g~~~ 321 (701)
.|..+ +..+...+++..|.+.++.+.... ..|-...+..++.+... .+..+++.+.+..+..
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~------------ 207 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIA------------ 207 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH------------
Confidence 34444 333333478888888888776432 23334444445544443 3434445444444322
Q ss_pred HHHHHHHHH--HHcCCCcCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 037695 322 EAKELVNQM--SQMGCIPDVVTYTAVVNGFC--RVGELDQAKKMLQQMYH 367 (701)
Q Consensus 322 ~a~~~~~~~--~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~~~~ 367 (701)
..... ......|-..+|..+++.++ ..|+++.+...++.+..
T Consensus 208 ----~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 208 ----QARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred ----HHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11111 01112345667777777655 46777777777666653
No 302
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.29 E-value=0.58 Score=28.09 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037695 552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQK 580 (701)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 580 (701)
+..+...+...|++++|++.|+++++..|
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 33444444444444444444444444433
No 303
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=91.18 E-value=20 Score=36.98 Aligned_cols=177 Identities=11% Similarity=0.086 Sum_probs=100.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037695 476 AVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTV 555 (701)
Q Consensus 476 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 555 (701)
+.|....-+++..+..+-++.-...+..+|...| .+...|..++++|... ..+.-..+++++.+..+ .|.+.-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 3455556677777777777777777777777743 4666777777777777 55666777777777542 233334444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Q 037695 556 IHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRTA-SKADASTCHVLVESY 627 (701)
Q Consensus 556 ~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~ 627 (701)
+.-|-+ ++...+..+|.++..+... ...|..+.... -.+.+.-..+..++.... ...-...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 444444 7777777777777655321 12333333221 234555555555554332 122223333344456
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037695 628 LNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSE 660 (701)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 660 (701)
....++.+|+.++..+++.+-+ |......++.
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~ 247 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIE 247 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence 6666777777777766664433 3333333333
No 304
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.10 E-value=2.6 Score=40.32 Aligned_cols=61 Identities=16% Similarity=0.288 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695 516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLS 577 (701)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 577 (701)
++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+++.+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 44444555555555555555555555443 33444555555555555555555555554443
No 305
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.90 E-value=30 Score=38.49 Aligned_cols=221 Identities=15% Similarity=0.072 Sum_probs=120.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHH
Q 037695 454 LCREGKMDGAKKFMQECLNKGCAVNV-------VNFTSLIR-GFCQKGDLEEALSLLDDMYLC----KKDPDTVTYTTII 521 (701)
Q Consensus 454 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~-~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~li 521 (701)
.....++.+|..+..++...-..|+. ..|+.+-. .....|+++.|.++.+..... -..+..+.+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 34567888888888777554222221 12333322 234578889998888776642 1234456677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHH--HHHHHhcCCHH--HHHHHHHHHHhc----CCC----hhHHH
Q 037695 522 DALSKNGRVEEATELMMKMLSKGLVPTVVT---YRTV--IHRYCQVGRVE--DLLKLLEKMLSK----QKC----RTAYN 586 (701)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~l--~~~~~~~g~~~--~A~~~~~~~~~~----~p~----~~~~~ 586 (701)
.+..-.|++++|..+..+..+..-.-+... |..+ ...+..+|+.. +.+..|...... .|. ..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 888888999999888776655321222222 2222 23355667433 333333333222 222 23444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHH--HHHHHHHHhcCChhhHHHHHHHHHhCCCCC--CH--hhHH
Q 037695 587 QVIENLCSFGYLEEAGKILGKVLRT----ASKADASTC--HVLVESYLNKGIPLLAYKVACRMFNRNLIP--DL--KLCK 656 (701)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~--~~~~ 656 (701)
.+.+++.+ ++.+..-.....+. .+.|-.... ..|+..+...|++++|.....++......+ .+ ....
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 55555554 33333333332222 222222222 367788889999999999888887743332 22 2222
Q ss_pred HHHH--HHHhcCCHHHHHHHHHH
Q 037695 657 KVSE--RLILEGKSEEADTLMLR 677 (701)
Q Consensus 657 ~l~~--~~~~~g~~~~A~~~~~~ 677 (701)
..+. .....|+..+|..+..+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 2222 22357888888888766
No 306
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=90.33 E-value=12 Score=32.84 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=10.1
Q ss_pred hCCCCCChhhHHHHHHHHHhcCC
Q 037695 402 EEWWTPNAITYSVVMHGLRREGK 424 (701)
Q Consensus 402 ~~~~~~~~~~~~~ll~~~~~~g~ 424 (701)
+.+++|+...+..++..+.+.|+
T Consensus 22 ~~~i~~~~~L~~lli~lLi~~~~ 44 (167)
T PF07035_consen 22 QHNIPVQHELYELLIDLLIRNGQ 44 (167)
T ss_pred HcCCCCCHHHHHHHHHHHHHcCC
Confidence 33444444444444444444444
No 307
>PRK09687 putative lyase; Provisional
Probab=90.20 E-value=19 Score=35.02 Aligned_cols=124 Identities=10% Similarity=-0.015 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037695 548 TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFG-YLEEAGKILGKVLRTASKADASTCHVLVES 626 (701)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 626 (701)
+..+-...+.++.+.++ ++++..+-.+++ +++..+-...+.++...+ ....+...+..++. .++..+-...+.+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~-d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~a 215 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK-DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIG 215 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc-CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHH
Confidence 44444455555555554 345555555543 233333333334444332 13344444444442 3455555555566
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 627 YLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
+.+.|+ ..|+..+-+.++.+ + .....+.++...|.. +|+..+.++.+..+
T Consensus 216 Lg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~ 265 (280)
T PRK09687 216 LALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFD 265 (280)
T ss_pred HHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCC
Confidence 666655 34555555555421 1 223455566666663 56666666665443
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.85 E-value=5.9 Score=35.39 Aligned_cols=62 Identities=23% Similarity=0.187 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695 516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVPT--VVTYRTVIHRYCQVGRVEDLLKLLEKMLS 577 (701)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 577 (701)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+..+++.....+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555666666666666665555432222 22344455555555666655555555443
No 309
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.74 E-value=7.7 Score=30.35 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q 037695 532 EATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIEN 591 (701)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 591 (701)
+..+-++.+....+.|++.+..+.+++|.+.+++..|.++|+.+..+-.+ ...|..++.-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHHHH
Confidence 56677777888888999999999999999999999999999988776544 3366666543
No 310
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.65 E-value=5.9 Score=37.95 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=57.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 037695 439 GFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKG---CAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTV 515 (701)
Q Consensus 439 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 515 (701)
|.+....+...++..-....+++.++.++-++.... ..++...+ +++..+. .-+.++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 334444445555555555566667766666655431 11111111 1222222 234566777776666777777777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 037695 516 TYTTIIDALSKNGRVEEATELMMKMLSK 543 (701)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 543 (701)
+++.+|+.+.+.+++.+|..+...|+.+
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777777766666654
No 311
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=89.13 E-value=19 Score=34.46 Aligned_cols=136 Identities=13% Similarity=0.087 Sum_probs=79.9
Q ss_pred CcHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHH-cC-ChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCCHhHHH
Q 037695 156 LCQGAKRVLRLMAR-RGIECRPEAFSYLMVAYSR-AG-KLRNAMYVLSMMQ-KAAVAPNLLICNTAIHVLVVGNKLAKAL 231 (701)
Q Consensus 156 ~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g-~~~~A~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 231 (701)
...+|+.+|+..-- ..+-.|+.+...+++.... .+ ....-.++.+-+. ..+-.++..+...++..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34455555552211 2234566666666666654 22 2222233333333 2234667777777888888888888877
Q ss_pred HHHHHHHhC-CCCCChHHHHHHHHHHHhcCChhHHHHHHHH-----chhCCCCCCHHHHHHHHHHH
Q 037695 232 RFLERMQLA-GITPNVLTYNCLIKGYCDLHRIKDAIKLIDE-----MPLKGCSPDKVSYYTVMGYL 291 (701)
Q Consensus 232 ~~~~~m~~~-g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~pd~~~~~~ll~~~ 291 (701)
++++..... +...|...|..+|+.....|+..-..++.++ ++..|+..+...-..+-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 777776544 4455677788888888888887777777665 23445555555554444443
No 312
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.87 E-value=12 Score=33.47 Aligned_cols=94 Identities=17% Similarity=0.119 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhC---CCCCCH----h
Q 037695 583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFNR---NLIPDL----K 653 (701)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~p~~----~ 653 (701)
..+..++..|++.|+.++|.+.|.++.+....+. ...+..++......|++..+...+.++... +-.++. .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3455556666666666666666666554432222 223445555566666666655555554441 111111 2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 654 LCKKVSERLILEGKSEEADTLMLRF 678 (701)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (701)
+|..+ .++..+++.+|-+.|-..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHcc
Confidence 22222 334567777777777544
No 313
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=88.87 E-value=9.8 Score=33.51 Aligned_cols=25 Identities=12% Similarity=0.024 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCCC-hhHHHHHHHHHH
Q 037695 569 LKLLEKMLSKQKC-RTAYNQVIENLC 593 (701)
Q Consensus 569 ~~~~~~~~~~~p~-~~~~~~l~~~~~ 593 (701)
+.=|++++..+|+ ..++..++.+|.
T Consensus 55 isK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 55 ISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 3333333444444 344444444443
No 314
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=88.45 E-value=17 Score=31.95 Aligned_cols=100 Identities=21% Similarity=0.253 Sum_probs=49.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037695 501 LLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK 580 (701)
Q Consensus 501 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 580 (701)
.++.+.+.++.|+...+..+++.+.+.|++.... .++..++-+|.......+-.+ .+....+.++--.|..+-
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkRL- 88 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKRL- 88 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHHh-
Confidence 3344445556666667777777777666654333 333444445544433333222 223333333333333321
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 581 CRTAYNQVIENLCSFGYLEEAGKILGKV 608 (701)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 608 (701)
...+..++..+...|++-+|.++..+.
T Consensus 89 -~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 89 -GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 013445556666666666666666553
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.32 E-value=15 Score=31.26 Aligned_cols=51 Identities=18% Similarity=0.105 Sum_probs=30.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 561 QVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRT 611 (701)
Q Consensus 561 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 611 (701)
..++.+++..+++.+.-..|. +..-..-+..+...|++.+|.++|..+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 356666666666666666665 333333455556666677777766666553
No 316
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=88.25 E-value=2.9 Score=43.43 Aligned_cols=98 Identities=15% Similarity=0.068 Sum_probs=47.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 037695 595 FGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTL 674 (701)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 674 (701)
.|+...|.+.+..+....+.-.-+....|+....+.|-...|-.++.+.+..+ ...+-++..++.++....+.+.|++.
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHH
Confidence 35555555555555443332223333444455555555555555554444422 11223344445555555555555555
Q ss_pred HHHHHHcCCCCCchHHHHh
Q 037695 675 MLRFVERGHIQPKSEEHLQ 693 (701)
Q Consensus 675 ~~~~~~~~~~~~~~~~~l~ 693 (701)
|+.+++..++.|.+...|.
T Consensus 699 ~~~a~~~~~~~~~~~~~l~ 717 (886)
T KOG4507|consen 699 FRQALKLTTKCPECENSLK 717 (886)
T ss_pred HHHHHhcCCCChhhHHHHH
Confidence 5555555555555555443
No 317
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.20 E-value=27 Score=34.19 Aligned_cols=136 Identities=13% Similarity=0.184 Sum_probs=77.4
Q ss_pred hhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCC---CcC
Q 037695 262 IKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGC---IPD 338 (701)
Q Consensus 262 ~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~---~p~ 338 (701)
+++.+.+++.|.+.|+.-+..+|-+..-.+.. .+-+... .....|..+++.|++... .++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~-~~~~~~~----------------~~~~ra~~iy~~mKk~H~fLTs~~ 140 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEE-EEKEDYD----------------EIIQRAKEIYKEMKKKHPFLTSPE 140 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHh-cccccHH----------------HHHHHHHHHHHHHHHhCccccCcc
Confidence 34567788899999998888777664433332 1111111 223566677777777632 244
Q ss_pred HHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCChh
Q 037695 339 VVTYTAVVNGFCRVGE----LDQAKKMLQQMYHHGCKPNTV--SYTAFLNGLCHNGK--SLEAREMINTSEEEWWTPNAI 410 (701)
Q Consensus 339 ~~~~~~li~~~~~~g~----~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~ 410 (701)
...+..++.. ...+ .+.++.+|+.+.+.|...+.. ..+.++..+..... ...+..+++.+.+.++++...
T Consensus 141 D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~ 218 (297)
T PF13170_consen 141 DYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYM 218 (297)
T ss_pred chhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccc
Confidence 4556666543 3333 356778888888877665432 22333322221111 346677777777777777766
Q ss_pred hHHHHH
Q 037695 411 TYSVVM 416 (701)
Q Consensus 411 ~~~~ll 416 (701)
.|..+.
T Consensus 219 ~yp~lG 224 (297)
T PF13170_consen 219 HYPTLG 224 (297)
T ss_pred cccHHH
Confidence 665443
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.13 E-value=1.1 Score=26.55 Aligned_cols=26 Identities=8% Similarity=0.461 Sum_probs=13.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037695 555 VIHRYCQVGRVEDLLKLLEKMLSKQK 580 (701)
Q Consensus 555 l~~~~~~~g~~~~A~~~~~~~~~~~p 580 (701)
+..++.+.|++++|.+.|++++...|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 44445555555555555555555544
No 319
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=86.88 E-value=6.4 Score=30.43 Aligned_cols=62 Identities=15% Similarity=0.191 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChhHHHHHHH
Q 037695 529 RVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK-CRTAYNQVIE 590 (701)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~ 590 (701)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+....+-. ....|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 3445667777777778888888888889999999999999999887775433 3445555443
No 320
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=86.87 E-value=51 Score=36.08 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 037695 141 PIVYYMMLEILSKTKLCQGAKRVLRLM 167 (701)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~m 167 (701)
+.-|+ .+..+.-.|.++.|.++++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 55565 677777778888888887433
No 321
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.85 E-value=5.6 Score=38.48 Aligned_cols=95 Identities=14% Similarity=0.015 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHH
Q 037695 584 AYNQVIENLCSFGYLEEAGKILGKVLRTAS---KADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVS 659 (701)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~ 659 (701)
.|.-=+.-|.+..++..|...|.+.+...+ ..+.+.|+.-..+-...|++..|+.-..+++. +.|+. ..|..-+
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhhhh
Confidence 444456677788888888888888776643 33456677777777777888888888888887 56654 6666667
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 037695 660 ERLILEGKSEEADTLMLRFVE 680 (701)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~ 680 (701)
.++....++.+|..+.+...+
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhh
Confidence 778888887777777665533
No 322
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=86.76 E-value=1.3 Score=26.50 Aligned_cols=30 Identities=17% Similarity=0.039 Sum_probs=20.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 654 LCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
++..++.+|...|++++|.+.|+++++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455667777777777777777777766543
No 323
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=86.57 E-value=1e+02 Score=38.89 Aligned_cols=152 Identities=10% Similarity=0.112 Sum_probs=94.4
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhcCCCC--CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695 110 QICAVLRSQADERVALQFFYWADRQWRYR--HDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYS 187 (701)
Q Consensus 110 ~~~~~l~~~~~~~~Al~~f~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~ 187 (701)
.+.++-.+++.+..|+-.++.. +....+ .....|..+...|+..++++...-+...-.. ++..+ .-|-...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e 1460 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHE 1460 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHH
Confidence 3444445567777777766642 111111 1122344455599999999988888764221 22233 3344556
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHH-HHHHHhcCChhHHH
Q 037695 188 RAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCL-IKGYCDLHRIKDAI 266 (701)
Q Consensus 188 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~ 266 (701)
..|+|..|...|+.+.+.+ ++....++.++......|.++.++-..+-.... ..+....++.+ +.+--+.++++...
T Consensus 1461 ~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e 1538 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLE 1538 (2382)
T ss_pred hhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhh
Confidence 7899999999999999876 555778888888888888888888766665543 23333333332 34446777777777
Q ss_pred HHHH
Q 037695 267 KLID 270 (701)
Q Consensus 267 ~~~~ 270 (701)
..+.
T Consensus 1539 ~~l~ 1542 (2382)
T KOG0890|consen 1539 SYLS 1542 (2382)
T ss_pred hhhh
Confidence 6655
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=86.52 E-value=0.12 Score=44.54 Aligned_cols=83 Identities=13% Similarity=0.127 Sum_probs=40.5
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCh
Q 037695 218 IHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRI 297 (701)
Q Consensus 218 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~ 297 (701)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++... ......++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcchH
Confidence 44444455555555555555544434445555666666666655555555554211 12223344444555555
Q ss_pred hHHHHHHHHH
Q 037695 298 KEVRDLMEKM 307 (701)
Q Consensus 298 ~~a~~~~~~~ 307 (701)
+++.-++.++
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 5555555443
No 325
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.51 E-value=3.7 Score=39.22 Aligned_cols=100 Identities=9% Similarity=0.121 Sum_probs=54.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC
Q 037695 136 RYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRG-----IECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPN 210 (701)
Q Consensus 136 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~ 210 (701)
|.+++..+-..++.+.....+++.+...+-.+.... ...+..+|..++. .-+.++++.++..-++.|+.||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence 334444455555555555556666665554444321 0012223332222 2245566666666666777777
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 037695 211 LLICNTAIHVLVVGNKLAKALRFLERMQL 239 (701)
Q Consensus 211 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~ 239 (701)
.++++.+|..+.+.+++..|..+.-.|..
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 77777777777777777666666555543
No 326
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.24 E-value=59 Score=35.97 Aligned_cols=190 Identities=16% Similarity=0.097 Sum_probs=93.1
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCC-----HHHHHH--HHHHHHhcCCHHHHHHHHH--------HHHhCCCCCCHHHHH
Q 037695 490 CQKGDLEEALSLLDDMYLCKK-DPD-----TVTYTT--IIDALSKNGRVEEATELMM--------KMLSKGLVPTVVTYR 553 (701)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~~~~-~p~-----~~~~~~--li~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~ 553 (701)
+-.+++..|...+..+..... .|+ ...+.. ..-.+...|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 346889999999998875321 121 122222 2233446799999999997 444444333333332
Q ss_pred HH--HHHHHhcC--CHHH--HHHHHHHHHhc---CCC--hhHHH-HHHHHHHhc--CCHHHHHHHHHHHHHcC---CC--
Q 037695 554 TV--IHRYCQVG--RVED--LLKLLEKMLSK---QKC--RTAYN-QVIENLCSF--GYLEEAGKILGKVLRTA---SK-- 614 (701)
Q Consensus 554 ~l--~~~~~~~g--~~~~--A~~~~~~~~~~---~p~--~~~~~-~l~~~~~~~--g~~~~A~~~~~~~~~~~---~~-- 614 (701)
.+ +..+...+ ...+ +.++++.+... .|+ ..++. .++.++... -...++...+.+.++.- ..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 21 11122222 2222 55666555432 232 22333 333333321 22335555555443322 11
Q ss_pred -CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCCH--hhHHH-----HHHHHHhcCCHHHHHHHHHHHHH
Q 037695 615 -ADASTCHVLVESYLNKGIPLLAYKVACRMFNRN-LIPDL--KLCKK-----VSERLILEGKSEEADTLMLRFVE 680 (701)
Q Consensus 615 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~--~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~ 680 (701)
.-..+++.+...+. .|+..+..+......... ..||. ..|.. +...+-..|+.++|.....+...
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 11233444555555 677766555544443311 12332 34432 33346678999999988876643
No 327
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=86.03 E-value=60 Score=35.85 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=23.5
Q ss_pred HHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHH
Q 037695 252 LIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCK 293 (701)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~ 293 (701)
+|-.|.++|++++|.++....... .......+...+..|+.
T Consensus 117 ~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 117 LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence 445667888888888887555432 33344555556666554
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=85.81 E-value=2 Score=27.17 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 653 KLCKKVSERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
.++..++..|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 45667777777778888888777777653
No 329
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=85.22 E-value=48 Score=34.01 Aligned_cols=117 Identities=12% Similarity=0.153 Sum_probs=57.6
Q ss_pred HcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHH
Q 037695 188 RAGKLRNAM-YVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAI 266 (701)
Q Consensus 188 ~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~ 266 (701)
..|+...|- +++..+......|+.. ......+...|.++.+...+...... +.....+..++++...+.|+++.|.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i--~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLI--QLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhh--HHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 345554443 3344443332233332 22233445567777777666555432 2334456666677777777777777
Q ss_pred HHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 037695 267 KLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMV 308 (701)
Q Consensus 267 ~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 308 (701)
.+-..|....+. +...........-..|-++++...++++.
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 776666655443 22222222222223344555555555543
No 330
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=85.19 E-value=14 Score=30.77 Aligned_cols=66 Identities=11% Similarity=0.085 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHh-cCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 546 VPTVVTYRTVIHRYCQVGR---VEDLLKLLEKMLS-KQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLRT 611 (701)
Q Consensus 546 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 611 (701)
.++..+-..+..++.++.+ +.+.+.+++.+.+ ..|. ..-...|+-++.+.++++++.++++.+++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 3444444455555554433 3344555555553 2333 223334445555555555555555555543
No 331
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=84.99 E-value=38 Score=34.88 Aligned_cols=108 Identities=19% Similarity=0.156 Sum_probs=74.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhc-CCC----h-----hHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCCCH--
Q 037695 557 HRYCQVGRVEDLLKLLEKMLSK-QKC----R-----TAYNQVIENLCSFGYLEEAGKILGKVLR-------TASKADA-- 617 (701)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~~~~~-~p~----~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~-- 617 (701)
..+.-.|++.+|.+++-..--. .|- + ..+|.|+-+..+.|.+..+..+|.++++ .|.+|.+
T Consensus 248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~ 327 (696)
T KOG2471|consen 248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF 327 (696)
T ss_pred HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence 4566789999999887654221 111 1 1347777778889999999999999885 2433322
Q ss_pred --------HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 037695 618 --------STCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILE 665 (701)
Q Consensus 618 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 665 (701)
.+....+-.|...|++..|.+.|.+...- +.-++..|..++.+|+..
T Consensus 328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 12334566788999999999999888772 233667888888888753
No 332
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.93 E-value=18 Score=33.44 Aligned_cols=67 Identities=18% Similarity=0.161 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCCh-------hhHHHHHHHHHhCCCCC-----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695 620 CHVLVESYLNKGIP-------LLAYKVACRMFNRNLIP-----DLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQP 686 (701)
Q Consensus 620 ~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 686 (701)
+-.++|.|...|+. ..|++.|.++....-.| ...+...++....+.|++++|..+|.+++..+..+.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 33444555555542 34555666665533222 234555677788889999999999999998876555
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.39 E-value=9 Score=40.21 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 338 DVVTYTAVVNGFCRVGELDQAKKMLQQMY 366 (701)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 366 (701)
+..-|..|.++....+++..|.+.|....
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 33445555565566666666655555443
No 334
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.38 E-value=7.8 Score=29.95 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 427 EACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLN 472 (701)
Q Consensus 427 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 472 (701)
++.+-++.+....+.|++.+..+.+++|-+.+++..|.++|+.++.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444445555556666666666666666666666666666665553
No 335
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.38 E-value=2 Score=25.64 Aligned_cols=26 Identities=35% Similarity=0.502 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695 552 YRTVIHRYCQVGRVEDLLKLLEKMLS 577 (701)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 577 (701)
|..+...|...|++++|.+.|++.++
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33344444444444444444444443
No 336
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.18 E-value=73 Score=35.22 Aligned_cols=87 Identities=11% Similarity=0.107 Sum_probs=35.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHhCCCCCChhhHHHHHHHHHh---c
Q 037695 347 NGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEA-REMINTSEEEWWTPNAITYSVVMHGLRR---E 422 (701)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~ 422 (701)
..+.-.|+++.|.+.+-. ..+...+.+.+...+.-|.-.+-.... ..++..-.. .|....+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~---~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPG---DPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCC---CCCCcCHHHHHHHHHHHHhc
Confidence 445667888888887766 222234555554444433221111111 111111111 1122556777777766 3
Q ss_pred CCHHHHHHHHHHHHHc
Q 037695 423 GKLSEACDVVREMVKK 438 (701)
Q Consensus 423 g~~~~A~~~~~~m~~~ 438 (701)
.+..+|++.+-.+...
T Consensus 341 td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 341 TDPREALQYLYLICLF 356 (613)
T ss_dssp T-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHHc
Confidence 4666677666655443
No 337
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.98 E-value=17 Score=28.49 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 037695 194 NAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQ 238 (701)
Q Consensus 194 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 238 (701)
+..+-++.+....+-|++....+.+++|.+.+++..|.++|+-++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444455555555555555555555555555555554
No 338
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=83.92 E-value=42 Score=32.26 Aligned_cols=82 Identities=22% Similarity=0.233 Sum_probs=46.3
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037695 581 CRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSE 660 (701)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 660 (701)
++.....++..|.+.|++.+|...|-.. ..++...+..++......|...++ +.-+-.. +-
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~----~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~Ra-VL 149 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLG----TDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARA-VL 149 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHH-HH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhc----CChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHH-HH
Confidence 3677888899999999999988777431 122233322244433344433322 1122222 22
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 037695 661 RLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~ 681 (701)
.|+-.|+...|...+....++
T Consensus 150 ~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 150 QYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 456678888888888777766
No 339
>PRK09687 putative lyase; Provisional
Probab=83.75 E-value=45 Score=32.48 Aligned_cols=137 Identities=18% Similarity=0.112 Sum_probs=74.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCChhHHHHHHH
Q 037695 512 PDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG-RVEDLLKLLEKMLSKQKCRTAYNQVIE 590 (701)
Q Consensus 512 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~l~~ 590 (701)
++..+-...+.++.+.++ ..++..+-.+.+. ++...-...+.++.+.+ .-..+...+..++. +++..+-...+.
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~-D~~~~VR~~A~~ 214 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ-DKNEEIRIEAII 214 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc-CCChHHHHHHHH
Confidence 344555555666666655 3455555555542 34444444444554432 13355555555553 445555566666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037695 591 NLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERL 662 (701)
Q Consensus 591 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 662 (701)
++.+.|+ ..|+..+-+.++.+ + .....+.++...|.. +|+..+.++.+ -.||..+-....+++
T Consensus 215 aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~--~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY--KFDDNEIITKAIDKL 277 (280)
T ss_pred HHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh--hCCChhHHHHHHHHH
Confidence 7777666 45665555555432 2 223566667777764 57777777776 333554444444443
No 340
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.74 E-value=77 Score=36.06 Aligned_cols=37 Identities=8% Similarity=0.137 Sum_probs=18.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037695 489 FCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALS 525 (701)
Q Consensus 489 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 525 (701)
|......+-++..++.+....-.++....+.++.-|+
T Consensus 601 ~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~ 637 (877)
T KOG2063|consen 601 YLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL 637 (877)
T ss_pred HhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence 3444455555555555554333444455555555444
No 341
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.63 E-value=8.7 Score=34.82 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=25.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 485 LIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKML 541 (701)
Q Consensus 485 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (701)
.++.+.+.+.+.+|+...++-.+.. +-|..+-..+++.||-.|++++|..-++-.-
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 3444444555555555554444432 2233334444455555555555554444433
No 342
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.60 E-value=12 Score=33.71 Aligned_cols=72 Identities=11% Similarity=0.052 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695 496 EEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK---GLVPTVVTYRTVIHRYCQVGRVEDL 568 (701)
Q Consensus 496 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~A 568 (701)
+.|.+.|-.+...+.--++.....|...| ...+.++++.++.+..+. +-.+|+..+..|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 55666666665554333444444444333 355666666666666553 2245566666666666666666655
No 343
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.58 E-value=26 Score=29.83 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=25.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037695 527 NGRVEEATELMMKMLSKGLVPTVV-TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC 581 (701)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 581 (701)
.++++++..+++.|.-. .|+.. .-..-...+...|++++|.++|++.....+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~ 76 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGA 76 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence 45555555555555542 22211 1111223344556666666666665554443
No 344
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.51 E-value=73 Score=34.72 Aligned_cols=178 Identities=14% Similarity=0.077 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH----HH-HHhcCCHHHHHHHHHHHHh-------CCCCCChhhHHHHHHHHHhc
Q 037695 355 LDQAKKMLQQMYHHGCKPNTVSYTAFL----NG-LCHNGKSLEAREMINTSEE-------EWWTPNAITYSVVMHGLRRE 422 (701)
Q Consensus 355 ~~~a~~~~~~~~~~~~~~~~~~~~~li----~~-~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~ 422 (701)
...+.++++...+.| +...-..+. .+ +....+.+.|..+|..+.+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567778888877765 222222222 22 4456788888888888766 33 222344455555543
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hc
Q 037695 423 G-----KLSEACDVVREMVKKGFFPTPVEINLLIQSLCR-EGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFC----QK 492 (701)
Q Consensus 423 g-----~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~ 492 (701)
. +...|+.++...-..| .|+.......+..... ..+...|.++|......|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 2 4455677776666665 3333332222221111 23455666666666665532 22222222221 12
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037695 493 GDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKG 544 (701)
Q Consensus 493 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (701)
.+...|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+...|
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 34556666666665554 2221111112222222 55555555555554443
No 345
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=82.67 E-value=3 Score=26.28 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 618 STCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
.+++.|+..|...|++++|..++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777777665
No 346
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=82.62 E-value=17 Score=30.28 Aligned_cols=67 Identities=9% Similarity=-0.011 Sum_probs=36.3
Q ss_pred CCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 579 QKCRTAYNQVIENLCSFG---YLEEAGKILGKVLR-TASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 579 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
.++..+...+++++.+.. +..+.+.+++++.+ ..+.........|.-++.+.|++++++.+...+++
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 344555556666666543 34555666666664 22222233334455566666666666666666665
No 347
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=82.01 E-value=9.7 Score=34.54 Aligned_cols=127 Identities=16% Similarity=0.170 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHH
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS--KADASTCHVLVESY 627 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~ 627 (701)
|.+..+..+.+.+...+|+...+.-++.+|. ...-..+...||-.|++++|..-++-+-+..+ .+....|..++.+-
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e 82 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE 82 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence 3455667788899999999999999888888 55666789999999999999988887765533 23345566665432
Q ss_pred HhcCChhhHHHHHHHHHhCCCCC------CHhhHHHHHHHHH-hc-CCHHHHHHHHHHHHHcCCCCCc
Q 037695 628 LNKGIPLLAYKVACRMFNRNLIP------DLKLCKKVSERLI-LE-GKSEEADTLMLRFVERGHIQPK 687 (701)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~~-~~-g~~~~A~~~~~~~~~~~~~~~~ 687 (701)
.. =.....-+..| .......+..++. +. |.-+.+..+-+.+.+.++.++-
T Consensus 83 a~----------R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 83 AA----------RNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HH----------HHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 11 11122222333 2322333333332 33 4555567777888888875543
No 348
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=81.93 E-value=61 Score=32.72 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=27.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 410 ITYSVVMHGLRREGKLSEACDVVREMVKKGFFP---TPVEINLLIQSLCREGKMDGAKKFMQECLN 472 (701)
Q Consensus 410 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 472 (701)
.+|..+...+.+.|.++.|...+..+...+... .+.....-+..+...|+...|...++....
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554432111 122222333334444444555544444443
No 349
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=81.82 E-value=70 Score=33.33 Aligned_cols=179 Identities=16% Similarity=0.137 Sum_probs=128.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 037695 440 FFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTT 519 (701)
Q Consensus 440 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 519 (701)
.+.|.....+++..+...-.+.-++.+..+|+..| -+-..|..++.+|... ..+.-..+|+++.+..+ .|.+.-..
T Consensus 62 ~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~Re 137 (711)
T COG1747 62 QLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRE 137 (711)
T ss_pred ccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHH
Confidence 35577788889999999999999999999998864 4677888999999998 56888899998887543 23333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---hhHHHHHHHH
Q 037695 520 IIDALSKNGRVEEATELMMKMLSKGLVPT-----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC---RTAYNQVIEN 591 (701)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~ 591 (701)
|..-|-+ ++...+..+|.+....-++.. ...|..+.... ..+.+..+.+..++.+.... ...+..+-.-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 5555544 888999999998887633311 22455444322 45778888888887766443 3455666677
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037695 592 LCSFGYLEEAGKILGKVLRTASKADASTCHVLVES 626 (701)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 626 (701)
|....++.+|++++..+++..- -|...-..++..
T Consensus 215 Ys~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~ 248 (711)
T COG1747 215 YSENENWTEAIRILKHILEHDE-KDVWARKEIIEN 248 (711)
T ss_pred hccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHH
Confidence 8888999999999999998763 355555555543
No 350
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=81.54 E-value=14 Score=33.27 Aligned_cols=76 Identities=12% Similarity=0.069 Sum_probs=38.7
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChh
Q 037695 560 CQVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS---KADASTCHVLVESYLNKGIPL 634 (701)
Q Consensus 560 ~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~ 634 (701)
.+.|+- .|.+.|-.+...+.- +.....|+..|. ..+.++++.++-++++... .+|+..+.+|+..|.+.|+++
T Consensus 118 sr~~d~-~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGDQ-EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCcH-HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 344443 445444444433211 333444444443 4566666666666655421 445666666666666666666
Q ss_pred hHH
Q 037695 635 LAY 637 (701)
Q Consensus 635 ~A~ 637 (701)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 554
No 351
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.87 E-value=54 Score=31.44 Aligned_cols=71 Identities=17% Similarity=0.061 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHhhHH
Q 037695 585 YNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN-----RNLIPDLKLCK 656 (701)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 656 (701)
+......|..+|.+.+|.++.++++..+ +.+...+..|+..+...|+--.|.+.++++-+ .|+..+..+++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 3445566777777777777777777665 45667777777777777877777776666543 35554444433
No 352
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=80.54 E-value=30 Score=32.05 Aligned_cols=116 Identities=16% Similarity=0.096 Sum_probs=66.5
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHH
Q 037695 489 FCQKGDLEEALSLLDDMYLCKKDPDTVT-YTTIIDALSKNGRVEEATELMMKMLSKGLVPTVV-TYRTVIHRYCQVGRVE 566 (701)
Q Consensus 489 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~ 566 (701)
|....++..|+.-|.+.+. +.|+..+ |+.-+-++.+..+++.+..-..+.++ +.|+.. ....+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhcccc
Confidence 4445567777776666655 4666633 45556667777777777776666665 345533 3334455566677777
Q ss_pred HHHHHHHHHHhc---CC-C--hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 567 DLLKLLEKMLSK---QK-C--RTAYNQVIENLCSFGYLEEAGKILGKV 608 (701)
Q Consensus 567 ~A~~~~~~~~~~---~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 608 (701)
+|+..+.++... .| + .++...|..+-...=...+..++.++.
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~ 143 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL 143 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence 777777776433 11 1 344444444443333445555555543
No 353
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.20 E-value=39 Score=35.81 Aligned_cols=129 Identities=16% Similarity=0.069 Sum_probs=87.8
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 037695 110 QICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRA 189 (701)
Q Consensus 110 ~~~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 189 (701)
.+...|.+++-.+.||++ .+|+.- -.....+.|+++.|.++..+. .+..-|..|..+....
T Consensus 619 ~va~Fle~~g~~e~AL~~----------s~D~d~---rFelal~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 619 KVAHFLESQGMKEQALEL----------STDPDQ---RFELALKLGRLDIAFDLAVEA------NSEVKWRQLGDAALSA 679 (794)
T ss_pred hHHhHhhhccchHhhhhc----------CCChhh---hhhhhhhcCcHHHHHHHHHhh------cchHHHHHHHHHHhhc
Confidence 466777778877788776 222211 123455778888888776544 3666788899998899
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHH
Q 037695 190 GKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLI 269 (701)
Q Consensus 190 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~ 269 (701)
+++..|.++|..... |..|+-.+...|+.+....+-....+.|. . |...-+|...|+++++.+++
T Consensus 680 ~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 680 GELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred ccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHH
Confidence 999999988887653 55677777777877766666666666552 2 22334566788888888887
Q ss_pred HHc
Q 037695 270 DEM 272 (701)
Q Consensus 270 ~~m 272 (701)
..-
T Consensus 745 i~t 747 (794)
T KOG0276|consen 745 IST 747 (794)
T ss_pred Hhc
Confidence 654
No 354
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.68 E-value=7.4 Score=40.62 Aligned_cols=85 Identities=18% Similarity=0.135 Sum_probs=62.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 037695 561 QVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYK 638 (701)
Q Consensus 561 ~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 638 (701)
..|+...|...+..+....|. ....-.|+..+.+.|..-.|-.++.+.+... ...+.++..++.+|+...+.+.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 467788888888877776665 2344566677777777777888887777766 4567777788888888888888888
Q ss_pred HHHHHHhC
Q 037695 639 VACRMFNR 646 (701)
Q Consensus 639 ~~~~~~~~ 646 (701)
.++.++++
T Consensus 698 ~~~~a~~~ 705 (886)
T KOG4507|consen 698 AFRQALKL 705 (886)
T ss_pred HHHHHHhc
Confidence 88888873
No 355
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.24 E-value=4.3 Score=26.30 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 657 KVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
.++.+|...|+.+.|.++++++++.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 57889999999999999999999755
No 356
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=79.22 E-value=72 Score=31.86 Aligned_cols=78 Identities=15% Similarity=0.100 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHh---cCCHHHHHHHHH
Q 037695 531 EEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCS---FGYLEEAGKILG 606 (701)
Q Consensus 531 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g~~~~A~~~~~ 606 (701)
+.-+.++++.++.+ +.+...+..++..+.+..+.++..+-+++++..+|. ...|..++..... .-.+.....+|.
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 44566677766663 455666667777777777777777778888777775 5666666555443 223555555555
Q ss_pred HHH
Q 037695 607 KVL 609 (701)
Q Consensus 607 ~~~ 609 (701)
+.+
T Consensus 127 ~~l 129 (321)
T PF08424_consen 127 KCL 129 (321)
T ss_pred HHH
Confidence 543
No 357
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=79.13 E-value=29 Score=32.74 Aligned_cols=57 Identities=7% Similarity=0.035 Sum_probs=29.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 037695 485 LIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALS-KNGRVEEATELMMKML 541 (701)
Q Consensus 485 ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 541 (701)
++..+-+.|+++++...++++...+...+..-.+.|-.+|- ..|....+++++..+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 44555666667777777666666555555555555555552 2344444444444443
No 358
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.72 E-value=27 Score=33.19 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=43.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----
Q 037695 556 IHRYCQVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN---- 629 (701)
Q Consensus 556 ~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 629 (701)
|.+++..+++.+++...-+--+.... +.+..--|-.|.+.|......++-..-++....-+...|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 45666666666666555444332211 233333455556666666666666555554333334445555444433
Q ss_pred -cCChhhHHHHH
Q 037695 630 -KGIPLLAYKVA 640 (701)
Q Consensus 630 -~g~~~~A~~~~ 640 (701)
.|.+++|.++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666554
No 359
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=77.49 E-value=70 Score=30.75 Aligned_cols=57 Identities=16% Similarity=0.247 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKV 608 (701)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 608 (701)
+......|..+|.+.+|.++-++.++.+|- ...+..++..|...|+--+|...++++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 445567788888888888888888888877 456667788888888877777777665
No 360
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.16 E-value=5.4 Score=22.61 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=17.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 654 LCKKVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
.+..++..+...|++++|...+.+.++..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 34455666666666666666666666543
No 361
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=76.90 E-value=53 Score=30.54 Aligned_cols=86 Identities=16% Similarity=0.052 Sum_probs=63.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHH
Q 037695 523 ALSKNGRVEEATELMMKMLSKGLVPTVV-TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEE 600 (701)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 600 (701)
.|....+++.|+..|.+.+.. .|+.. -|+.-+.++.+..+++.+..--.++++..|+ ......++..+.....+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 466667788888888777764 56653 3455566677788888888888888888877 4556667777777788888
Q ss_pred HHHHHHHHHH
Q 037695 601 AGKILGKVLR 610 (701)
Q Consensus 601 A~~~~~~~~~ 610 (701)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 8888888743
No 362
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.19 E-value=22 Score=29.05 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHH
Q 037695 532 EATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIE 590 (701)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~ 590 (701)
+..+-++.+....+.|++.....-+++|.+.+++..|.++|+-+..+-+. ...|..++.
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 45566677777788999999999999999999999999999988876554 344554443
No 363
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=76.15 E-value=1e+02 Score=31.87 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=63.4
Q ss_pred CChHHH-HHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 037695 119 ADERVA-LQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMY 197 (701)
Q Consensus 119 ~~~~~A-l~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 197 (701)
||...| .++|.-+.++++ ++..-.....+....|.++.+.+.+....+. +-....+...+++...+.|++++|..
T Consensus 303 gd~~aas~~~~~~lr~~~~---~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQ---DPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred cCHHHHHHHHHHHHHhCCC---CchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 444433 344444444433 2223333444566677777777777655443 22345566677777777777887777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhC
Q 037695 198 VLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLA 240 (701)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~ 240 (701)
+-+.|....++ +...........-..|-++++.-.++++...
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 77777655433 2222222222223445566777666666544
No 364
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=75.70 E-value=1.3e+02 Score=33.03 Aligned_cols=159 Identities=10% Similarity=0.086 Sum_probs=74.5
Q ss_pred HHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HcCCCCC-HHHHHHHHHHHHH
Q 037695 111 ICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMA-RRGIECR-PEAFSYLMVAYSR 188 (701)
Q Consensus 111 ~~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~-~~~~~~~-~~~~~~li~~~~~ 188 (701)
+..|....|.++.|+.+--.+...-.+.++...+..++.-+... -.+.+.+.+..-. +.++.+. ....+.++..|..
T Consensus 65 ~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~-yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~ 143 (929)
T KOG2062|consen 65 ASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDM-YIETASETYKNPEQKSPIDQRLRDIVERMIQKCLD 143 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHH-HHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhh
Confidence 44566667999999998654433333444444555544333221 0112222222111 1111111 1234555555555
Q ss_pred cCChhHHHHH---------HHHH-HHCCCCCCHHHHHHHHHHHHccCC-HhHHHHHHHHHHh---CCCCCChHHHHHHHH
Q 037695 189 AGKLRNAMYV---------LSMM-QKAAVAPNLLICNTAIHVLVVGNK-LAKALRFLERMQL---AGITPNVLTYNCLIK 254 (701)
Q Consensus 189 ~g~~~~A~~~---------~~~~-~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~---~g~~~~~~~~~~li~ 254 (701)
.+++..|+.+ ++.. .+.. ......+.++..+....+ -+--.++++.+.+ .+-.|| |-.+.+
T Consensus 144 d~e~~~aiGia~E~~rld~ie~Ail~~d--~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD---y~~vc~ 218 (929)
T KOG2062|consen 144 DNEYKQAIGIAFETRRLDIIEEAILKSD--SVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPD---YFSVCQ 218 (929)
T ss_pred hhHHHHHHhHHhhhhhHHHHHHHhcccc--ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC---eeeeee
Confidence 5555544432 3332 1111 122233334443333222 2222233333332 222444 556677
Q ss_pred HHHhcCChhHHHHHHHHchhC
Q 037695 255 GYCDLHRIKDAIKLIDEMPLK 275 (701)
Q Consensus 255 ~~~~~g~~~~A~~~~~~m~~~ 275 (701)
+|.-..+.+.+.++++.+.+.
T Consensus 219 c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 219 CYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred eeEEcCCHHHHHHHHHHHHhc
Confidence 888888999999999888874
No 365
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.02 E-value=38 Score=32.24 Aligned_cols=20 Identities=20% Similarity=0.326 Sum_probs=9.6
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 037695 558 RYCQVGRVEDLLKLLEKMLS 577 (701)
Q Consensus 558 ~~~~~g~~~~A~~~~~~~~~ 577 (701)
.|.+.+....+.++-...+.
T Consensus 127 LysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 127 LYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred HHHHhcCHHHHHHHHHHHHh
Confidence 34455555544444444444
No 366
>PRK10941 hypothetical protein; Provisional
Probab=74.91 E-value=17 Score=35.03 Aligned_cols=64 Identities=14% Similarity=0.049 Sum_probs=37.5
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695 622 VLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK 687 (701)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 687 (701)
.+-.+|.+.++++.|+.+.+.++. +.|+. .-+.-.+-.|.+.|.+..|..-++..+++-|.-|.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 344556666666666666666666 44443 33444555666666666666666666666654444
No 367
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=74.04 E-value=1.9 Score=36.94 Aligned_cols=53 Identities=11% Similarity=0.216 Sum_probs=23.1
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 037695 147 MLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVL 199 (701)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 199 (701)
++..+.+.+.+.....+++.+...+...++...+.++..|++.+..+.....+
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L 65 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL 65 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence 34444444444444444544444433334444444555554444434443333
No 368
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=73.87 E-value=8.7 Score=28.46 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=21.5
Q ss_pred hcCChhhHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHH
Q 037695 629 NKGIPLLAYKVACRMFNRNLIPD--LKLCKKVSERLILEGKSEEADTL 674 (701)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~ 674 (701)
...+.++|+..+.+++++-..|. ..++..++.+|...|++.+++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555554322221 14444555555555555555544
No 369
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.34 E-value=43 Score=31.16 Aligned_cols=94 Identities=9% Similarity=-0.030 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCh-----------hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSK--------QKCR-----------TAYNQVIENLCSFGYLEEAGKILGKVLRT 611 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~-----------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 611 (701)
+...-.+-+.+.|++.+|..-|..++.. .|-. +.+..+..++...|++-++++.-.+++..
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 3444456667778887777766655332 2321 12223333444556666666666666654
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 612 ASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 612 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
. +.+...|..-+.+....=+..+|..-+...++
T Consensus 260 ~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 260 H-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred C-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3 22455554444444444455566666666655
No 370
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=73.29 E-value=8.1 Score=26.27 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=14.5
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695 623 LVESYLNKGIPLLAYKVACRMFNRNLIPDL 652 (701)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 652 (701)
++-++.+.|+++.|..+.+.+++ +.|+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N 34 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDN 34 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCc
Confidence 44455555666666665555555 44544
No 371
>PRK12798 chemotaxis protein; Reviewed
Probab=72.69 E-value=1.2e+02 Score=31.06 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=75.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHHHHHhcCCHH
Q 037695 457 EGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGF-CQKGDLEEALSLLDDMYLCKKDPDTVT----YTTIIDALSKNGRVE 531 (701)
Q Consensus 457 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~li~~~~~~g~~~ 531 (701)
.|+..++.+.+..+.....++...-|-.|+.+- ....+...|+++|+..+- ..|-... ...-+....+.|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 567777777777666555566666666665543 334566777777776654 2343322 222333445666666
Q ss_pred HHHHHHHHHHhC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhc-CCC--hhHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 532 EATELMMKMLSK-GLVPTVVTY-RTVIHRYCQVGRVEDLLKLLEKMLSK-QKC--RTAYNQVIENLCSFGYLEEAGKILG 606 (701)
Q Consensus 532 ~A~~~~~~m~~~-~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 606 (701)
++..+-.+-... ...|-..-| ..+..++.+.++-..- ..+..++.. .|. ...|..+...-.-.|+.+-|...-.
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 655444333332 111211111 1222233333221111 112333322 222 4466666666666677666666666
Q ss_pred HHHHcC
Q 037695 607 KVLRTA 612 (701)
Q Consensus 607 ~~~~~~ 612 (701)
+++...
T Consensus 282 ~A~~L~ 287 (421)
T PRK12798 282 RALKLA 287 (421)
T ss_pred HHHHhc
Confidence 665553
No 372
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=72.48 E-value=67 Score=29.75 Aligned_cols=26 Identities=15% Similarity=-0.064 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhC
Q 037695 621 HVLVESYLNKGIPLLAYKVACRMFNR 646 (701)
Q Consensus 621 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (701)
..++....+.|++++|...|.+++..
T Consensus 169 YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 169 YLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34455556666666666666666653
No 373
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=71.86 E-value=7 Score=22.08 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=9.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 037695 587 QVIENLCSFGYLEEAGKILGKVL 609 (701)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~ 609 (701)
.++..+...|++++|...+.+.+
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 33344444444444444444443
No 374
>PRK10941 hypothetical protein; Provisional
Probab=71.06 E-value=58 Score=31.38 Aligned_cols=58 Identities=12% Similarity=-0.054 Sum_probs=36.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 554 TVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRT 611 (701)
Q Consensus 554 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 611 (701)
.+-.+|.+.++++.|+++.+.++...|+ +.-+..-+..|.+.|.+..|..=++..++.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3445566667777777777777766666 444555566666677777776666666554
No 375
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.89 E-value=2.9 Score=40.49 Aligned_cols=120 Identities=13% Similarity=-0.048 Sum_probs=86.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 037695 560 CQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYK 638 (701)
Q Consensus 560 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 638 (701)
...|.++.|++.|...+..+|. ...|..-..++.+.++...|++=++.+++.++. ...-|-.-..+....|++.+|..
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 4578899999999999988877 667777788889999999999999988876543 23334444556677899999999
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 639 VACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 639 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
.+..+.+.+..+....+.. ...-..++.++-...+++..+..
T Consensus 204 dl~~a~kld~dE~~~a~lK--eV~p~a~ki~e~~~k~er~~~e~ 245 (377)
T KOG1308|consen 204 DLALACKLDYDEANSATLK--EVFPNAGKIEEHRRKYERAREER 245 (377)
T ss_pred HHHHHHhccccHHHHHHHH--HhccchhhhhhchhHHHHHHHHh
Confidence 9999998777765543322 23344566666666666666554
No 376
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.36 E-value=2e+02 Score=32.87 Aligned_cols=116 Identities=11% Similarity=0.150 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHHCCCCCCHHHHH--
Q 037695 143 VYYMMLEILSKTKLCQGAKRVLRLMARRG---IECRPEAFSYLMVAYSRAGKL--RNAMYVLSMMQKAAVAPNLLICN-- 215 (701)
Q Consensus 143 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~-- 215 (701)
-|..|+..|...|+.++|+++|.++.... -..-...+..++..+.+.+.. +-..+.-.-............+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 48899999999999999999999988732 111122334455555454443 22222222222111000000000
Q ss_pred ----------HHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHh
Q 037695 216 ----------TAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCD 258 (701)
Q Consensus 216 ----------~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~ 258 (701)
..+-.|......+-+...++.+....-.++..-.+.++..|+.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1222344556677788888888766555667777777777764
No 377
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.33 E-value=10 Score=24.61 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=11.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 037695 588 VIENLCSFGYLEEAGKILGKVLR 610 (701)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~ 610 (701)
++.+|...|+.+.|..++++++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44455555555555555555543
No 378
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=70.13 E-value=1.7e+02 Score=31.99 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=0.0
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCH
Q 037695 629 NKGIPLLAYKVACRMFNRNLIPDL 652 (701)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~p~~ 652 (701)
..|++.+|.+.+-.+++....|..
T Consensus 507 ~~~~~~~Aa~~Lv~Ll~~~~~Pk~ 530 (566)
T PF07575_consen 507 DEGDFREAASLLVSLLKSPIAPKS 530 (566)
T ss_dssp ------------------------
T ss_pred hhhhHHHHHHHHHHHHCCCCCcHH
Confidence 346666666666666655555554
No 379
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=69.73 E-value=9.8 Score=38.92 Aligned_cols=87 Identities=18% Similarity=0.130 Sum_probs=46.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHH
Q 037695 522 DALSKNGRVEEATELMMKMLSKGLVPTVVTY-RTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLE 599 (701)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 599 (701)
..+...+.++.|+.++.+.++. .|+...| ..-..++.+.+++..|+.-+.++++..|. ...|-.-+.++.+.+.+.
T Consensus 12 n~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 3344555666666666666653 3433332 22224555666666666666666665554 334444444555555666
Q ss_pred HHHHHHHHHHH
Q 037695 600 EAGKILGKVLR 610 (701)
Q Consensus 600 ~A~~~~~~~~~ 610 (701)
+|...|+....
T Consensus 90 ~A~~~l~~~~~ 100 (476)
T KOG0376|consen 90 KALLDLEKVKK 100 (476)
T ss_pred HHHHHHHHhhh
Confidence 66666665544
No 380
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.35 E-value=18 Score=26.93 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=17.2
Q ss_pred cCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHH
Q 037695 562 VGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGK 603 (701)
Q Consensus 562 ~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~ 603 (701)
..+.++|+..+.+++++.++ ..++..++.+|+..|++.+.+.
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444332 1233334444444444444433
No 381
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.06 E-value=2.1e+02 Score=32.42 Aligned_cols=227 Identities=14% Similarity=0.092 Sum_probs=123.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHhC----CCCCChhhHHHH
Q 037695 348 GFCRVGELDQAKKMLQQMYHHGCKPNT-------VSYTAFLN-GLCHNGKSLEAREMINTSEEE----WWTPNAITYSVV 415 (701)
Q Consensus 348 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~-~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l 415 (701)
......++.+|..+..++...-..|+. ..++.+-. .....|+++.|.++-+..... ...+..+.+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 345578899999998887764222221 13333322 234568888888887766543 234556677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHH--HHHHHhcCCHH--HHHHHHHHHHHc---CCC---CCHHHH
Q 037695 416 MHGLRREGKLSEACDVVREMVKKGFFPTPV---EINLL--IQSLCREGKMD--GAKKFMQECLNK---GCA---VNVVNF 482 (701)
Q Consensus 416 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~---~~~~l--i~~~~~~g~~~--~a~~~~~~~~~~---~~~---~~~~~~ 482 (701)
..+..-.|++++|..+.++..+..-..+.. .+..+ ...+...|... .....+...... ..+ +-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 888888999999999988766542222222 22222 23345566332 223333322221 011 122344
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHHHHH
Q 037695 483 TSLIRGFCQK-GDLEEALSLLDDMYLCKKDPDTVTY--TTIIDALSKNGRVEEATELMMKMLSKGL----VPTVVTYRTV 555 (701)
Q Consensus 483 ~~ll~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~l 555 (701)
..++.++.+. +...+|..-+.-.......|-...+ ..|+..+...|+.++|...+.++..... .++..+-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4455555541 1222222222222222222222222 3677888899999999999988876422 2222222222
Q ss_pred HHH--HHhcCCHHHHHHHHHH
Q 037695 556 IHR--YCQVGRVEDLLKLLEK 574 (701)
Q Consensus 556 ~~~--~~~~g~~~~A~~~~~~ 574 (701)
+.. ....|+.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 322 3457888887777665
No 382
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.82 E-value=3.6 Score=39.95 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=37.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 037695 492 KGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTV-VTYRTVIHRYCQVGRVEDLLK 570 (701)
Q Consensus 492 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 570 (701)
.|.++.|++.|...+... ++....|..-.+++.+.+++..|++=+...... .||. .-|-.-..+-...|++++|.+
T Consensus 127 ~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--n~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--NPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred CcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhcc--CcccccccchhhHHHHHhhchHHHHH
Confidence 444555555555544432 333344444444555555555555554444442 2221 112222222233455555555
Q ss_pred HHHHHHhcC
Q 037695 571 LLEKMLSKQ 579 (701)
Q Consensus 571 ~~~~~~~~~ 579 (701)
.++.+.+.+
T Consensus 204 dl~~a~kld 212 (377)
T KOG1308|consen 204 DLALACKLD 212 (377)
T ss_pred HHHHHHhcc
Confidence 555554443
No 383
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.72 E-value=1e+02 Score=28.71 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=58.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHH
Q 037695 486 IRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN-GRVEEATELMMKMLSK--GLVPT---VVTYRTVIHRY 559 (701)
Q Consensus 486 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~--~~~p~---~~~~~~l~~~~ 559 (701)
|..|...|++..|-+...++- ..|-.. .+++.|+..|+..-+. |-..+ ...+..+...-
T Consensus 100 ieIyt~~Grf~~aAk~~~~ia---------------EiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 100 IEIYTDMGRFTMAAKHHIEIA---------------EIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred HHHHHhhhHHHHHHhhhhhHH---------------HHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 445666677666655444332 222221 3445555555554432 11112 22333444445
Q ss_pred HhcCCHHHHHHHHHHHHhcCCChhHH--H---HH-HHHHH--hcCCHHHHHHHHHHHHHcCC
Q 037695 560 CQVGRVEDLLKLLEKMLSKQKCRTAY--N---QV-IENLC--SFGYLEEAGKILGKVLRTAS 613 (701)
Q Consensus 560 ~~~g~~~~A~~~~~~~~~~~p~~~~~--~---~l-~~~~~--~~g~~~~A~~~~~~~~~~~~ 613 (701)
...+++.+|+.+|++......+.... . .+ -.++| ...+.-.+...+++-.+..|
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDP 226 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCC
Confidence 67899999999999887664332221 1 11 12222 33566666666776666544
No 384
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=68.51 E-value=3.4e+02 Score=34.70 Aligned_cols=121 Identities=11% Similarity=0.060 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 037695 340 VTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGL 419 (701)
Q Consensus 340 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 419 (701)
..|..+...|+..+++|....+...-.. +.. ....|-.....|++..|..-|+.+.+.+ ++...+++.++...
T Consensus 1421 ~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sm 1493 (2382)
T KOG0890|consen 1421 ALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSM 1493 (2382)
T ss_pred HHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhh
Confidence 3455556689999999988887764111 222 2334445667899999999999998864 34477788888877
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHH
Q 037695 420 RREGKLSEACDVVREMVKKGFFPTPVEI-NLLIQSLCREGKMDGAKKFMQ 468 (701)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~ 468 (701)
...+.+...+...+-....- .+....+ +.=+.+-.+.++++.....+.
T Consensus 1494 l~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1494 LAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred hcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 77888877776555544432 2222222 333444466777777776655
No 385
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.48 E-value=8.7 Score=21.37 Aligned_cols=7 Identities=43% Similarity=0.363 Sum_probs=2.5
Q ss_pred cCCHHHH
Q 037695 595 FGYLEEA 601 (701)
Q Consensus 595 ~g~~~~A 601 (701)
.|++++|
T Consensus 14 ~G~~~eA 20 (26)
T PF07721_consen 14 QGDPDEA 20 (26)
T ss_pred cCCHHHH
Confidence 3333333
No 386
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=67.72 E-value=78 Score=27.04 Aligned_cols=80 Identities=11% Similarity=0.117 Sum_probs=39.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCC-HhHHHHHHHHHHhCCCCCChHHHHHH
Q 037695 179 FSYLMVAYSRAGKLRNAMYVLSMMQKAA-----VAPNLLICNTAIHVLVVGNK-LAKALRFLERMQLAGITPNVLTYNCL 252 (701)
Q Consensus 179 ~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~l 252 (701)
.+.++...+..+++.-.+.+++.+.... -..+...|..++.+.++... --.+..+|..|.+.+.+++..-|..|
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3555555555555555555555543211 02233445555555544433 23344555555555555555555555
Q ss_pred HHHHHh
Q 037695 253 IKGYCD 258 (701)
Q Consensus 253 i~~~~~ 258 (701)
|.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 555543
No 387
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.07 E-value=2.2e+02 Score=32.09 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=61.9
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 037695 110 QICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRA 189 (701)
Q Consensus 110 ~~~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 189 (701)
.++..|...|-|+.||.|-.--. .-.......|+.+.|++.-..+ -++.+|..|...-.+.
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~-------------tRF~LaLe~gnle~ale~akkl------dd~d~w~rLge~Al~q 685 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDER-------------TRFELALECGNLEVALEAAKKL------DDKDVWERLGEEALRQ 685 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcc-------------hheeeehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHh
Confidence 44555666666777776633100 1112344567777776654333 3778888888888888
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 037695 190 GKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQ 238 (701)
Q Consensus 190 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~ 238 (701)
|+.+-|...|+..+. |..|--.|.-.|+.++-.++.+...
T Consensus 686 gn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae 725 (1202)
T KOG0292|consen 686 GNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAE 725 (1202)
T ss_pred cchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHH
Confidence 888888888887663 3334444555666666555554443
No 388
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=66.85 E-value=1.7e+02 Score=30.54 Aligned_cols=106 Identities=13% Similarity=0.040 Sum_probs=63.0
Q ss_pred HHhcCCHHHHHHHHHHHHH---cCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCC-----
Q 037695 454 LCREGKMDGAKKFMQECLN---KGCAV-----NVVNFTSLIRGFCQKGDLEEALSLLDDMYL-------CKKDPD----- 513 (701)
Q Consensus 454 ~~~~g~~~~a~~~~~~~~~---~~~~~-----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-------~~~~p~----- 513 (701)
+...|++.+|.+++...-- .|... ....||.+...+.+.|.+..+..+|....+ .|++|.
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 4456777777777654321 12111 122345555556666666666666655542 444432
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037695 514 ------TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ 561 (701)
Q Consensus 514 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 561 (701)
..+||.=+ .|...|++-.|.+.|.+.... +..++..|..|..+|..
T Consensus 330 s~nks~eilYNcG~-~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 330 SQNKSMEILYNCGL-LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred hcccchhhHHhhhH-HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 23444333 467788888888888887765 45677888888887753
No 389
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=65.82 E-value=34 Score=26.64 Aligned_cols=24 Identities=21% Similarity=0.044 Sum_probs=13.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 658 VSERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 658 l~~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
++......|++++|...++++++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344445556666666666555443
No 390
>PHA02875 ankyrin repeat protein; Provisional
Probab=65.61 E-value=1.7e+02 Score=30.32 Aligned_cols=184 Identities=11% Similarity=0.140 Sum_probs=85.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 037695 345 VVNGFCRVGELDQAKKMLQQMYHHGCKPNTV--SYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRRE 422 (701)
Q Consensus 345 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 422 (701)
.+...+..|+.+ +.+.+.+.|..|+.. ...+.+...+..|+.+.+..+++.-....-..+..-. +.+...+..
T Consensus 38 pL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~ 112 (413)
T PHA02875 38 PIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGM-TPLHLATIL 112 (413)
T ss_pred HHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCC-CHHHHHHHh
Confidence 344556677765 344455556555432 1123455566778877766655431110000011111 233334455
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHH
Q 037695 423 GKLSEACDVVREMVKKGFFPTPVE--INLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVN--FTSLIRGFCQKGDLEEA 498 (701)
Q Consensus 423 g~~~~A~~~~~~m~~~~~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A 498 (701)
|+. ++++.+.+.|..|+... -.+.+...+..|+.+.+..+++ .|..++... -.+-+...+..|+.+
T Consensus 113 ~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~----~g~~~~~~d~~g~TpL~~A~~~g~~e-- 182 (413)
T PHA02875 113 KKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLID----HKACLDIEDCCGCTPLIIAMAKGDIA-- 182 (413)
T ss_pred CCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh----cCCCCCCCCCCCCCHHHHHHHcCCHH--
Confidence 654 45555666665554321 1223444556777765555443 333332211 112333444556654
Q ss_pred HHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 037695 499 LSLLDDMYLCKKDPDTVT---YTTIIDALSKNGRVEEATELMMKMLSKGLVPTV 549 (701)
Q Consensus 499 ~~~~~~~~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 549 (701)
+.+.+.+.|..++... ..+++...+..|+.+ +.+.+.+.|..++.
T Consensus 183 --iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~ 230 (413)
T PHA02875 183 --ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNI 230 (413)
T ss_pred --HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcch
Confidence 3444555666555332 123444344556654 34445556666654
No 391
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.35 E-value=2.3e+02 Score=31.54 Aligned_cols=73 Identities=12% Similarity=-0.032 Sum_probs=40.0
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCC---ChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHc
Q 037695 218 IHVLVVGNKLAKALRFLERMQLAGITP---NVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKE 294 (701)
Q Consensus 218 l~~~~~~g~~~~A~~~~~~m~~~g~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~ 294 (701)
+.-+.+.+.+++|+.+.+..... .| -.......|..+.-.|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 34455666677777666654422 33 2234555666666677777776666666543 444444444444444
Q ss_pred CC
Q 037695 295 KR 296 (701)
Q Consensus 295 g~ 296 (701)
++
T Consensus 437 ~~ 438 (846)
T KOG2066|consen 437 DQ 438 (846)
T ss_pred cc
Confidence 33
No 392
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=65.17 E-value=41 Score=22.90 Aligned_cols=29 Identities=10% Similarity=0.114 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCh
Q 037695 554 TVIHRYCQVGRVEDLLKLLEKMLSKQKCR 582 (701)
Q Consensus 554 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 582 (701)
.+.-++.+.|++++|.++.+.+++..|+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 34556677777777777777777777763
No 393
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.41 E-value=1.4e+02 Score=28.69 Aligned_cols=212 Identities=14% Similarity=0.117 Sum_probs=121.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCCCCHHHH
Q 037695 414 VVMHGLRREGKLSEACDVVREMVKKGFFPTPV-------EINLLIQSLCREGKMDGAKKFMQECL----NKGCAVNVVNF 482 (701)
Q Consensus 414 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~-------~~~~li~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~ 482 (701)
.+.+-..+.+++++|+..+.+++..|+..+.. +...+.+.|...|++..-........ .-.-+......
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 35566778899999999999999998776654 45567778888888776655544322 22222244455
Q ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCCCHHHH
Q 037695 483 TSLIRGFCQ-KGDLEEALSLLDDMYLCKKDPDT-----VTYTTIIDALSKNGRVEEATELMMKM----LSKGLVPTVVTY 552 (701)
Q Consensus 483 ~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~ 552 (701)
.+|+..+-. ...++.-+.+.....+-...... ..-..++..+.+.|.+.+|+.+...+ .+..-+|+..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 566665543 34566777777666543222111 12245677788889998888766544 343444554433
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHHhcC-----C-ChhHHHHHHHH--HHhcCCHHHHHHHHHHHHHc--CCCCCHHHHH
Q 037695 553 RTV-IHRYCQVGRVEDLLKLLEKMLSKQ-----K-CRTAYNQVIEN--LCSFGYLEEAGKILGKVLRT--ASKADASTCH 621 (701)
Q Consensus 553 ~~l-~~~~~~~g~~~~A~~~~~~~~~~~-----p-~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~ 621 (701)
..+ -.+|....++.++..-+..+.... | ...+--.+..+ .|...++..|...|-++.+- ....|...+.
T Consensus 168 hllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~ 247 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACV 247 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHH
Confidence 222 245656666666655554443321 1 11111222222 24556788888888777663 1234444444
Q ss_pred HHHH
Q 037695 622 VLVE 625 (701)
Q Consensus 622 ~l~~ 625 (701)
+|-.
T Consensus 248 sLkY 251 (421)
T COG5159 248 SLKY 251 (421)
T ss_pred HHHH
Confidence 4433
No 394
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=64.29 E-value=65 Score=24.90 Aligned_cols=29 Identities=28% Similarity=0.234 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 583 TAYNQVIENLCSFGYLEEAGKILGKVLRT 611 (701)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 611 (701)
.....++..+...|++++|++.+-.+++.
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33444444444444444444444444433
No 395
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.13 E-value=1.3e+02 Score=28.45 Aligned_cols=141 Identities=17% Similarity=0.192 Sum_probs=73.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHH
Q 037695 483 TSLIRGFCQKGDLEEALSLLDDMYLCKK-----------DPDTVTYTTIIDALSKNGRVEEATELMMKMLSK-GLVPTVV 550 (701)
Q Consensus 483 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~-----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~ 550 (701)
+.|...|...+.+.+..+++.++..+-. ..-...|..=|+.|...++-..-..+|++.+.. .-.|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 3455666666667776666666653211 111235666677777777777777777766542 2234444
Q ss_pred HHHHHHHHH-----HhcCCHHHHHHHHHHHHhcC-----CChh---HHHHHHHHHHhcCC----HHHHHHHHHHHHHcCC
Q 037695 551 TYRTVIHRY-----CQVGRVEDLLKLLEKMLSKQ-----KCRT---AYNQVIENLCSFGY----LEEAGKILGKVLRTAS 613 (701)
Q Consensus 551 ~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~-----p~~~---~~~~l~~~~~~~g~----~~~A~~~~~~~~~~~~ 613 (701)
... +++-| .+.|.+++|-.-|-++.+.. |... -|-.|+.++.+.|- ..+|.-+ ..
T Consensus 229 ImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPy-------KN 300 (440)
T KOG1464|consen 229 IMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPY-------KN 300 (440)
T ss_pred HHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCC-------CC
Confidence 333 33333 46677877765555554432 2211 23445566655541 2222111 11
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 037695 614 KADASTCHVLVESYLNKG 631 (701)
Q Consensus 614 ~~~~~~~~~l~~~~~~~g 631 (701)
.|.......|+.+|....
T Consensus 301 dPEIlAMTnlv~aYQ~Nd 318 (440)
T KOG1464|consen 301 DPEILAMTNLVAAYQNND 318 (440)
T ss_pred CHHHHHHHHHHHHHhccc
Confidence 344455666777665443
No 396
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=63.67 E-value=12 Score=38.23 Aligned_cols=105 Identities=8% Similarity=-0.103 Sum_probs=72.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCChh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 037695 555 VIHRYCQVGRVEDLLKLLEKMLSKQKCRT-AYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP 633 (701)
Q Consensus 555 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 633 (701)
-+..+...+.++.|..++.+++..+|+.. .+..=..++.+.+++..|+.=+.++++..+. -...|.-=+.++.+.+.+
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHH
Confidence 34556677889999999999999988743 3444457788889999999888888886522 233333334556666777
Q ss_pred hhHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037695 634 LLAYKVACRMFNRNLIPDLKLCKKVSERL 662 (701)
Q Consensus 634 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 662 (701)
.+|+..++.... +.|+..-....+.-+
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 778888877777 777765555544433
No 397
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=62.69 E-value=2e+02 Score=30.10 Aligned_cols=94 Identities=11% Similarity=0.043 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCChhhHHHHHHHHHh-CCCCCCHhhHHHH
Q 037695 583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESY---LNKGIPLLAYKVACRMFN-RNLIPDLKLCKKV 658 (701)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l 658 (701)
..-+.+++.+...|-.++|..++..+.... +|+...+..+++.- ..+| ..-+..+|+.|.. .| .++..|-..
T Consensus 461 tl~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg--~d~~lw~~y 536 (568)
T KOG2396|consen 461 TLKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFG--ADSDLWMDY 536 (568)
T ss_pred ehhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhC--CChHHHHHH
Confidence 344567777778888888888888887753 66777777777642 2333 6777888888877 45 355555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 037695 659 SERLILEGKSEEADTLMLRFVE 680 (701)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~ 680 (701)
...=...|..+.+-.++-++.+
T Consensus 537 ~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 537 MKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHhhccCCCcccccHHHHHHHH
Confidence 5445578888888777776655
No 398
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=62.64 E-value=1.5e+02 Score=28.63 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHh-cC-CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037695 390 SLEAREMINTSEE-EWWTPNAITYSVVMHGLRR-EG-KLSEACDVVREMVKK-GFFPTPVEINLLIQSLCREGKMDGAKK 465 (701)
Q Consensus 390 ~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~-~g-~~~~A~~~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~ 465 (701)
+.+|+++|+.... ..+-.|..+...++..... .+ ....-.++.+-+... +-.++..+...++..++..++|..-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 4455555552211 1233444444555554443 11 222222233322221 234555555666666666666666666
Q ss_pred HHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 466 FMQECLNK-GCAVNVVNFTSLIRGFCQKGDLEEALSLLD 503 (701)
Q Consensus 466 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 503 (701)
++...... +...|...|..+|+.....|+..-..++.+
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 66555443 344455566666666666666554444444
No 399
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=61.23 E-value=1.6e+02 Score=28.52 Aligned_cols=21 Identities=29% Similarity=0.699 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHH
Q 037695 479 VVNFTSLIRGFCQKGDLEEAL 499 (701)
Q Consensus 479 ~~~~~~ll~~~~~~g~~~~A~ 499 (701)
..+|..|+.+++..|+.+-.+
T Consensus 321 lK~yaPLL~af~s~g~sEL~L 341 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELEL 341 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHH
Confidence 456778888888888876554
No 400
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.34 E-value=26 Score=31.90 Aligned_cols=51 Identities=27% Similarity=0.323 Sum_probs=24.6
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 037695 119 ADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMAR 169 (701)
Q Consensus 119 ~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 169 (701)
.+......+.+|+.+.....|++..|..++.++...|+.++|..+..++..
T Consensus 122 ~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 122 PDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444444444444445555555555555555555555555544443
No 401
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=60.13 E-value=1.7e+02 Score=28.49 Aligned_cols=83 Identities=14% Similarity=-0.046 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCChhHHHHHHHHHHh----cCC
Q 037695 529 RVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG-------RVEDLLKLLEKMLSKQKCRTAYNQVIENLCS----FGY 597 (701)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~ 597 (701)
+..+|...|.+..+.|..+...+...+...|.... +...|...+.++.... .......++.+|.. ..+
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-CHHHHHHHHHHHHcCCCCCcC
Confidence 55666666666666653322122222333332210 1224555555555433 33344444444432 235
Q ss_pred HHHHHHHHHHHHHcC
Q 037695 598 LEEAGKILGKVLRTA 612 (701)
Q Consensus 598 ~~~A~~~~~~~~~~~ 612 (701)
.++|...|.++.+.+
T Consensus 207 ~~~A~~wy~~Aa~~g 221 (292)
T COG0790 207 LKKAFRWYKKAAEQG 221 (292)
T ss_pred HHHHHHHHHHHHHCC
Confidence 666666666666554
No 402
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.96 E-value=1.2e+02 Score=31.09 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=40.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHhC
Q 037695 486 IRGFCQKGDLEEALSLLDDMYLCKKDPDTV--TYTTIIDALS--KNGRVEEATELMMKMLSK 543 (701)
Q Consensus 486 l~~~~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~li~~~~--~~g~~~~A~~~~~~m~~~ 543 (701)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455789999999999999876 555444 4555556664 456788899998887764
No 403
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=58.23 E-value=1.9e+02 Score=28.33 Aligned_cols=52 Identities=13% Similarity=0.273 Sum_probs=25.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCChh---HHHHHHHHHHhcCCHHHHHHHHH
Q 037695 555 VIHRYCQVGRVEDLLKLLEKMLSKQKCRT---AYNQVIENLCSFGYLEEAGKILG 606 (701)
Q Consensus 555 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~~~~ 606 (701)
|..+..+.|+..+|.+.|+.+.+..|... +...++.++....-+.....++.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLa 335 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLA 335 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455666666666666555555422 22344555544444444444433
No 404
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.34 E-value=94 Score=24.49 Aligned_cols=13 Identities=38% Similarity=0.641 Sum_probs=5.4
Q ss_pred hcCCHHHHHHHHH
Q 037695 491 QKGDLEEALSLLD 503 (701)
Q Consensus 491 ~~g~~~~A~~~~~ 503 (701)
..|++++|..+.+
T Consensus 51 NrG~Yq~Al~l~~ 63 (115)
T TIGR02508 51 NRGDYQSALQLGN 63 (115)
T ss_pred ccchHHHHHHhcC
Confidence 3444444444433
No 405
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.99 E-value=2.6e+02 Score=32.77 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=40.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHH
Q 037695 517 YTTIIDALSKNGRVEEATELMMKMLSKGLVPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQV 588 (701)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l 588 (701)
|...++.+-..+-.+.+.++-...++. ++++ +.+++.+.+-....|.+-+|.+.+- .+|+ ......+
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~----~npdserrrdcLRql 1060 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL----RNPDSERRRDCLRQL 1060 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH----cCCcHHHHHHHHHHH
Confidence 555566666666666666666655554 2222 3345555555566666666554332 2333 2344555
Q ss_pred HHHHHhcCCH
Q 037695 589 IENLCSFGYL 598 (701)
Q Consensus 589 ~~~~~~~g~~ 598 (701)
+-.++.+|.+
T Consensus 1061 vivLfecg~l 1070 (1480)
T KOG4521|consen 1061 VIVLFECGEL 1070 (1480)
T ss_pred HHHHHhccch
Confidence 5555555554
No 406
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=56.67 E-value=2.3e+02 Score=28.81 Aligned_cols=57 Identities=21% Similarity=0.187 Sum_probs=38.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHh
Q 037695 521 IDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYC-QVGRVEDLLKLLEKMLS 577 (701)
Q Consensus 521 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 577 (701)
|..+.+.|-+..|.++.+-+......-|+.....+|+.|+ +.++++-.+++.+....
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4556677888888888887777653336666666666654 66777777777766544
No 407
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.19 E-value=1.5e+02 Score=30.43 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=39.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHH--HHHHHHHHHH--hcCCHHHHHHHHHHHHhc
Q 037695 521 IDALSKNGRVEEATELMMKMLSKGLVPTVV--TYRTVIHRYC--QVGRVEDLLKLLEKMLSK 578 (701)
Q Consensus 521 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 578 (701)
+..+...+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 33455788899999999988886 555554 4445555554 456777888888877654
No 408
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.16 E-value=2.4e+02 Score=28.77 Aligned_cols=94 Identities=11% Similarity=-0.013 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---------CCCCC
Q 037695 480 VNFTSLIRGFCQKGDLEEALSLLDDMYLCKK--DPDTVTYTTIIDALSKNGRVEEATELMMKMLSK---------GLVPT 548 (701)
Q Consensus 480 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------~~~p~ 548 (701)
..+.-+..-|..+|+++.|++.|.+.+..-. +.....|..+|..-.-.|+|.....+..+.... .+++.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 3466677778888888888888888654211 122334555555555677777777777766553 12333
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 549 VVTYRTVIHRYCQVGRVEDLLKLLEKM 575 (701)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 575 (701)
...+..+...+. +++..|.+.|-..
T Consensus 231 l~C~agLa~L~l--kkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 231 LKCAAGLANLLL--KKYKSAAKYFLLA 255 (466)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHhC
Confidence 344444444433 3566665555443
No 409
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=56.16 E-value=2.2e+02 Score=28.41 Aligned_cols=115 Identities=17% Similarity=0.104 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHH
Q 037695 497 EALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ---VGRVEDLLKLLE 573 (701)
Q Consensus 497 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~ 573 (701)
.-+.++++.++.+ +.+...+..++..+.+..+.++..+.++++.... +-+...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 3344455544442 2334444455555555555555555555555542 2244445444443322 123444444444
Q ss_pred HHHhc------CC-----C-h-------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 574 KMLSK------QK-----C-R-------TAYNQVIENLCSFGYLEEAGKILGKVLRTAS 613 (701)
Q Consensus 574 ~~~~~------~p-----~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 613 (701)
+.+.. +. . . .++..+...+..+|..+.|..+++.+++.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 33322 00 0 0 1222333444566777777777777776654
No 410
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.91 E-value=2.6e+02 Score=29.08 Aligned_cols=77 Identities=14% Similarity=0.164 Sum_probs=37.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC
Q 037695 384 LCHNGKSLEAREMINTSEEEWWTPNAIT--YSVVMHGLRREGKLSEACDVVREMVKKGFFPTPV--EINLLIQSLCREGK 459 (701)
Q Consensus 384 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~--~~~~li~~~~~~g~ 459 (701)
.+..|+.+.+..++ +.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 9 A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 9 AILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 34556665544444 4565555432 233444555666654 344555566544432 11233444556677
Q ss_pred HHHHHHHHH
Q 037695 460 MDGAKKFMQ 468 (701)
Q Consensus 460 ~~~a~~~~~ 468 (701)
.+.+..+++
T Consensus 81 ~~~v~~Ll~ 89 (413)
T PHA02875 81 VKAVEELLD 89 (413)
T ss_pred HHHHHHHHH
Confidence 666555443
No 411
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=55.68 E-value=82 Score=25.98 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=29.1
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 430 DVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK 473 (701)
Q Consensus 430 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 473 (701)
+-++.+....+.|++.....-+++|-+.+|+..|.++|+-++.+
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33444555566777777777777777777777777777766554
No 412
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=55.06 E-value=1e+02 Score=25.64 Aligned_cols=44 Identities=11% Similarity=0.063 Sum_probs=33.2
Q ss_pred hHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 635 LAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRF 678 (701)
Q Consensus 635 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (701)
.+.++|+.|..+++--. ...|...+..+...|++++|.++|...
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 77788888888776544 477888888888888888888888653
No 413
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=54.32 E-value=2.2e+02 Score=27.80 Aligned_cols=98 Identities=13% Similarity=0.019 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----C--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c
Q 037695 494 DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN-----G--RVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ----V 562 (701)
Q Consensus 494 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~ 562 (701)
+..+|...|....+.|..+-..+...+...|... - +...|...|.++...+ +......+...|.. .
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~ 204 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVP 204 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCC
Confidence 4555555555555554322212222233333222 1 2235777777777665 34444444444433 3
Q ss_pred CCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcC
Q 037695 563 GRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFG 596 (701)
Q Consensus 563 g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g 596 (701)
.++.+|...|.+..+.+. ......+. .+...|
T Consensus 205 ~d~~~A~~wy~~Aa~~g~-~~a~~~~~-~~~~~g 236 (292)
T COG0790 205 RDLKKAFRWYKKAAEQGD-GAACYNLG-LMYLNG 236 (292)
T ss_pred cCHHHHHHHHHHHHHCCC-HHHHHHHH-HHHhcC
Confidence 367778888887777665 33333333 444444
No 414
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=54.25 E-value=1.1e+02 Score=24.20 Aligned_cols=87 Identities=18% Similarity=0.158 Sum_probs=54.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 424 KLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLD 503 (701)
Q Consensus 424 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 503 (701)
..++|..+-+-+...+-. ...+-.+-+..+...|++++|..+.+.. +.||...|-+|.. .+.|-.+++..-+.
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHH
Confidence 346666666665554311 2222223344567788999998877655 5778888876654 46777777777777
Q ss_pred HHHhCCCCCCHHHHH
Q 037695 504 DMYLCKKDPDTVTYT 518 (701)
Q Consensus 504 ~~~~~~~~p~~~~~~ 518 (701)
+|..+| .|....|.
T Consensus 93 rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 93 RLAASG-DPRLQTFV 106 (115)
T ss_pred HHHhCC-CHHHHHHH
Confidence 777766 56555554
No 415
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=53.00 E-value=2.7e+02 Score=28.39 Aligned_cols=94 Identities=16% Similarity=0.173 Sum_probs=63.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChhhHHHHHHHHHhC---C---CCCCHhhHHHHH
Q 037695 587 QVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYL-NKGIPLLAYKVACRMFNR---N---LIPDLKLCKKVS 659 (701)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~---~---~~p~~~~~~~l~ 659 (701)
..+..+.+.|-+..|.++.+-++..++.-|+.....+|..|. +.++++--+++++..... . ..|+... .++
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~--S~a 185 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAF--SIA 185 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHH--HHH
Confidence 446677788999999999998888887768877777777654 556776666666665441 1 2444322 233
Q ss_pred HHHHhcCCH---------------HHHHHHHHHHHHcC
Q 037695 660 ERLILEGKS---------------EEADTLMLRFVERG 682 (701)
Q Consensus 660 ~~~~~~g~~---------------~~A~~~~~~~~~~~ 682 (701)
-++...++. ++|...+.+++..-
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 345556665 78888888887654
No 416
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.82 E-value=1.2e+02 Score=24.40 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 341 TYTAVVNGFCRVGELDQAKKMLQQMYH 367 (701)
Q Consensus 341 ~~~~li~~~~~~g~~~~a~~~~~~~~~ 367 (701)
-|..|+..|...|..++|++++..+..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 377788888888888888888887776
No 417
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=52.19 E-value=1.4e+02 Score=29.11 Aligned_cols=109 Identities=12% Similarity=0.117 Sum_probs=63.4
Q ss_pred hcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCChhhHHH
Q 037695 561 QVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTC--HVLVESYLNKGIPLLAYK 638 (701)
Q Consensus 561 ~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~ 638 (701)
...-+.+|.++|+++++.... .|+ --..+...|. ..+.+.+. +.+..+| ..|.-+..+.|+..+|.+
T Consensus 228 Ea~Ti~~AE~l~k~ALka~e~--~yr-~sqq~qh~~~------~~da~~rR--Dtnvl~YIKRRLAMCARklGrlrEA~K 296 (556)
T KOG3807|consen 228 EATTIVDAERLFKQALKAGET--IYR-QSQQCQHQSP------QHEAQLRR--DTNVLVYIKRRLAMCARKLGRLREAVK 296 (556)
T ss_pred hhhhHHHHHHHHHHHHHHHHH--HHh-hHHHHhhhcc------chhhhhhc--ccchhhHHHHHHHHHHHHhhhHHHHHH
Confidence 344567788888877764321 111 0011111121 12222222 2333333 456666778899999999
Q ss_pred HHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 639 VACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVE 680 (701)
Q Consensus 639 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (701)
.+..+.+.-...+ ..+...++.++....-+.+...++-+.-+
T Consensus 297 ~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 297 IMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9998887322212 25667888899888888888887766654
No 418
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=51.13 E-value=1.8e+02 Score=27.07 Aligned_cols=18 Identities=11% Similarity=0.242 Sum_probs=8.7
Q ss_pred HHHHcCChhHHHHHHHHH
Q 037695 185 AYSRAGKLRNAMYVLSMM 202 (701)
Q Consensus 185 ~~~~~g~~~~A~~~~~~~ 202 (701)
.....|+.+.|+.....+
T Consensus 73 ~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 73 RAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHhccHHHHHHHHHHh
Confidence 334455555555544444
No 419
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=50.73 E-value=1.8e+02 Score=29.90 Aligned_cols=59 Identities=17% Similarity=0.111 Sum_probs=36.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 587 QVIENLCSFGYLEEAGKILGKVL-------RTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
.|++..+-.|++..|+++++.+- ..-+.-...++..++.+|...+++.+|++.|...+-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677788888877776541 111122334556666777777777777777766654
No 420
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.93 E-value=79 Score=28.66 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037695 546 VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK 580 (701)
Q Consensus 546 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 580 (701)
.|++.+|..++.++...|+.++|.+..+++....|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 56666666666666667777777666666666666
No 421
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=49.87 E-value=8.1 Score=38.88 Aligned_cols=7 Identities=29% Similarity=0.771 Sum_probs=3.1
Q ss_pred HHHHHHh
Q 037695 110 QICAVLR 116 (701)
Q Consensus 110 ~~~~~l~ 116 (701)
.||..|.
T Consensus 195 FVCGTLD 201 (458)
T PF10446_consen 195 FVCGTLD 201 (458)
T ss_pred ccCCCcC
Confidence 3444443
No 422
>PF03474 DMA: DMRTA motif; InterPro: IPR005173 This region is found to the C terminus of the DM DNA-binding domain IPR001275 from INTERPRO []. DM-domain proteins with this motif are known as DMRTA proteins. The function of this region is unknown.
Probab=49.46 E-value=46 Score=20.89 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=26.2
Q ss_pred HHHHhhhcCCCHHHHHHHHhcC-CChHHHHHHH
Q 037695 97 GELRNLLRSLKPRQICAVLRSQ-ADERVALQFF 128 (701)
Q Consensus 97 ~~l~~~~~~~~~~~~~~~l~~~-~~~~~Al~~f 128 (701)
..|.++++...++.+..+|+.+ ||.-.|++.|
T Consensus 6 diL~rvFP~~kr~~Le~iL~~C~GDvv~AIE~~ 38 (39)
T PF03474_consen 6 DILTRVFPHQKRSVLELILQRCNGDVVQAIEQF 38 (39)
T ss_pred HHHHHHCCCCChHHHHHHHHHcCCcHHHHHHHh
Confidence 4567788889999999999876 8888888764
No 423
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=49.22 E-value=41 Score=23.76 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=14.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 657 KVSERLILEGKSEEADTLMLRFVE 680 (701)
Q Consensus 657 ~l~~~~~~~g~~~~A~~~~~~~~~ 680 (701)
.++.+|...|++++|.++++++.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455666677777777777666654
No 424
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=48.03 E-value=1.3e+02 Score=23.28 Aligned_cols=64 Identities=17% Similarity=0.116 Sum_probs=39.4
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHH
Q 037695 605 LGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSE 669 (701)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 669 (701)
+++.++.+ +.|...-..+...+...|++++|++.+-.+++.+...+ -..-..++.++-..|.-+
T Consensus 11 l~~~~a~~-P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 11 LEAALAAN-PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 34444444 33677777888899999999999999998888554432 244455555555555533
No 425
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.51 E-value=75 Score=21.04 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=19.7
Q ss_pred HHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037695 151 LSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMV 184 (701)
Q Consensus 151 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~ 184 (701)
..+.|-..++..+++.|...|+..++..+..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3445555566666666666666666655555543
No 426
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=47.28 E-value=1.8e+02 Score=24.86 Aligned_cols=49 Identities=14% Similarity=0.221 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695 409 AITYSVVMHGLRREGK-LSEACDVVREMVKKGFFPTPVEINLLIQSLCRE 457 (701)
Q Consensus 409 ~~~~~~ll~~~~~~g~-~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 457 (701)
...|.+++.+..+... ---+..+|.-|.+.+.++++.-|..++.++.+.
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 3344555555544333 223444555555555555555566665555443
No 427
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.42 E-value=5e+02 Score=29.62 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=73.9
Q ss_pred cCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcC
Q 037695 259 LHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPD 338 (701)
Q Consensus 259 ~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 338 (701)
+.++++.+.+.+...--| .++|..+.+.|..+-|+...+.=..+-++.-..|+++.|++.-..+ -+
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkl------dd 671 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKL------DD 671 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhc------Cc
Confidence 345566555554432222 2344445566666666655544333334444557777776654333 26
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695 339 VVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEE 402 (701)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 402 (701)
..+|..|.....+.|+.+-|+..|+.... |..|--.|.-.|+.++-.++......
T Consensus 672 ~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~ 726 (1202)
T KOG0292|consen 672 KDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEI 726 (1202)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHh
Confidence 78999999999999999999999988664 33344445566777776666555443
No 428
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=46.21 E-value=1.5e+02 Score=26.52 Aligned_cols=22 Identities=14% Similarity=0.289 Sum_probs=12.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 037695 589 IENLCSFGYLEEAGKILGKVLR 610 (701)
Q Consensus 589 ~~~~~~~g~~~~A~~~~~~~~~ 610 (701)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3445555666666666655544
No 429
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.89 E-value=4.1e+02 Score=28.55 Aligned_cols=54 Identities=17% Similarity=0.155 Sum_probs=30.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHH
Q 037695 522 DALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYC-QVGRVEDLLKLLEKM 575 (701)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 575 (701)
..+.+.|-+..|.++.+-+.+....-|+.....+|+.|+ +..++.-.+++++..
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344556666667666666666543334555555555543 455566556655555
No 430
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=45.87 E-value=2.9e+02 Score=26.72 Aligned_cols=98 Identities=14% Similarity=0.146 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----
Q 037695 479 VVNFTSLIRGFCQKGDLEEALSLLDDMY----LCKKDPDTVTYT-TIIDALSKNGRVEEATELMMKMLSKGLVPTV---- 549 (701)
Q Consensus 479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~~~~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---- 549 (701)
...+..+..-|++.++.+.+.+...+.. ..|.+.|+..-. .|.-.|....-+++-++..+.|.+.|..-+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 4455556666666666666665554433 234444433221 1222233333355666666666666543321
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 037695 550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSK 578 (701)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 578 (701)
.+|.-+. +....++.+|-.++-..+..
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~t 221 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILPT 221 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhcc
Confidence 2222222 12234556666665555544
No 431
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.86 E-value=1.6e+02 Score=29.05 Aligned_cols=84 Identities=20% Similarity=0.134 Sum_probs=33.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCH
Q 037695 523 ALSKNGRVEEATELMMKMLSKGL-VP--TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYL 598 (701)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 598 (701)
-|.+.+++..|...|.+-++... .| +...|+.-..+-...|++..|+.-...++...|+ ...+-.=+.++....++
T Consensus 90 ~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~ 169 (390)
T KOG0551|consen 90 EYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERF 169 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHH
Confidence 34444444444444444443321 11 1223333333333344444444444444444444 22333333333334444
Q ss_pred HHHHHHHH
Q 037695 599 EEAGKILG 606 (701)
Q Consensus 599 ~~A~~~~~ 606 (701)
.+|..+.+
T Consensus 170 ~~a~nw~e 177 (390)
T KOG0551|consen 170 AEAVNWCE 177 (390)
T ss_pred HHHHHHHh
Confidence 44444333
No 432
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=45.58 E-value=1.8e+02 Score=24.22 Aligned_cols=43 Identities=12% Similarity=0.144 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHhCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHH
Q 037695 634 LLAYKVACRMFNRNLIPDL-KLCKKVSERLILEGKSEEADTLML 676 (701)
Q Consensus 634 ~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~ 676 (701)
+.+.++|+.|..+++-... ..|...+..+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3467788888888876554 777788888889999999998885
No 433
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=45.12 E-value=1.8e+02 Score=24.19 Aligned_cols=42 Identities=12% Similarity=-0.054 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHH
Q 037695 600 EAGKILGKVLRTASKA-DASTCHVLVESYLNKGIPLLAYKVAC 641 (701)
Q Consensus 600 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (701)
.+..+|..|...++.. -+..|...+..+...|++++|.++++
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444444443321 23344444444445555555554444
No 434
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=44.75 E-value=52 Score=23.24 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=8.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 037695 520 IIDALSKNGRVEEATELMMKM 540 (701)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m 540 (701)
+|.+|...|++++|.+++..+
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 334444444444444444333
No 435
>PF13934 ELYS: Nuclear pore complex assembly
Probab=44.73 E-value=2.7e+02 Score=26.08 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=44.9
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 037695 552 YRTVIHRYC--QVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD-ASTCHVLVES 626 (701)
Q Consensus 552 ~~~l~~~~~--~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 626 (701)
|...+.++. ..+++++|.+.+ ..|. +.....++..+...|+.+.|..++..+ ++.+. ......++ .
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L-----~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~---~p~l~s~~~~~~~~-~ 149 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELL-----SHPSLIPWFPDKILQALLRRGDPKLALRYLRAV---GPPLSSPEALTLYF-V 149 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHh-----CCCCCCcccHHHHHHHHHHCCChhHHHHHHHhc---CCCCCCHHHHHHHH-H
Confidence 334444444 345666666665 2333 122335666666677777777777664 22222 22222223 3
Q ss_pred HHhcCChhhHHHHHHHHHh
Q 037695 627 YLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~ 645 (701)
...+|...+|..+.+...+
T Consensus 150 ~La~~~v~EAf~~~R~~~~ 168 (226)
T PF13934_consen 150 ALANGLVTEAFSFQRSYPD 168 (226)
T ss_pred HHHcCCHHHHHHHHHhCch
Confidence 3667777777766554443
No 436
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=44.50 E-value=1.8e+02 Score=23.91 Aligned_cols=62 Identities=21% Similarity=0.021 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHh----CC-CCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 619 TCHVLVESYLNKGIPLLAYKVACRMFN----RN-LIPD-----LKLCKKVSERLILEGKSEEADTLMLRFVE 680 (701)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (701)
++..|..++...|++++++.-.++.+. +| +.-| +...-.-+.++-..|+.++|...|+...+
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 334444555555555555444444332 11 2222 12222334567778999999998877644
No 437
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.24 E-value=3e+02 Score=26.46 Aligned_cols=27 Identities=26% Similarity=0.352 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 442 PTPVEINLLIQSLCREGKMDGAKKFMQ 468 (701)
Q Consensus 442 ~~~~~~~~li~~~~~~g~~~~a~~~~~ 468 (701)
-++.....+...|.+.|++..|+..|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 356677778888888888888877654
No 438
>PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 []. They have been shown to be DNA-binding and may be transcription factors [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.20 E-value=16 Score=34.50 Aligned_cols=6 Identities=33% Similarity=0.473 Sum_probs=2.4
Q ss_pred cccCCC
Q 037695 10 SLFGSD 15 (701)
Q Consensus 10 ~~~~~~ 15 (701)
..|.++
T Consensus 42 ~ef~~~ 47 (240)
T PF05764_consen 42 EEFESE 47 (240)
T ss_pred ccccCC
Confidence 334443
No 439
>PRK11619 lytic murein transglycosylase; Provisional
Probab=44.02 E-value=5e+02 Score=28.99 Aligned_cols=203 Identities=6% Similarity=-0.046 Sum_probs=109.9
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 037695 352 VGELDQAKKMLQQMYHHG-CKPN--TVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEA 428 (701)
Q Consensus 352 ~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 428 (701)
..+.+.|..++..+.... ..+. ..++..+.......+...++...+....... .+......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 445688888888775432 2221 1233444444444433566666666554332 2444444455555688899888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-H--H--HHHHHH
Q 037695 429 CDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDL-E--E--ALSLLD 503 (701)
Q Consensus 429 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~--~--A~~~~~ 503 (701)
...+..|-... .-...-.--+.+++...|+.++|..+|+.+... .+ -|..|... +.|.. . . .-..-.
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~--fYG~LAa~--~Lg~~~~~~~~~~~~~~~ 403 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG--FYPMVAAQ--RLGEEYPLKIDKAPKPDS 403 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--cHHHHHHH--HcCCCCCCCCCCCCchhh
Confidence 88888875432 223344455667767789999999999887432 11 22222211 11211 0 0 000000
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 504 DMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEK 574 (701)
Q Consensus 504 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 574 (701)
.+ ..+. -..-+..+...|....|...+..+... .+......+.....+.|.++.++.....
T Consensus 404 ~~-----~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 404 AL-----TQGP--EMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred hh-----ccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 00 0000 112234556778888888888877764 2445555666666677777777665543
No 440
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=43.90 E-value=58 Score=18.50 Aligned_cols=8 Identities=38% Similarity=0.443 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 037695 601 AGKILGKV 608 (701)
Q Consensus 601 A~~~~~~~ 608 (701)
|..+|+++
T Consensus 6 ~r~i~e~~ 13 (33)
T smart00386 6 ARKIYERA 13 (33)
T ss_pred HHHHHHHH
Confidence 33333333
No 441
>PRK11619 lytic murein transglycosylase; Provisional
Probab=43.90 E-value=5e+02 Score=28.97 Aligned_cols=207 Identities=9% Similarity=0.027 Sum_probs=111.9
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695 387 NGKSLEAREMINTSEEEW-WTPNA--ITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGA 463 (701)
Q Consensus 387 ~g~~~~A~~~~~~~~~~~-~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 463 (701)
..+.+.|..++....... +.+.. ..+..+.......+...++...++...... .+......-+......++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 355688888888764432 22221 223333333333333556666666544332 2444455555566688899988
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHh
Q 037695 464 KKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEA-TELMMKMLS 542 (701)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~ 542 (701)
...+..|.... .-...-.--+..++...|+.++|...|+.+.. ..+ -|..|.. .+.|..-.- ...... ..
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~~--fYG~LAa--~~Lg~~~~~~~~~~~~-~~ 402 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QRG--FYPMVAA--QRLGEEYPLKIDKAPK-PD 402 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CCC--cHHHHHH--HHcCCCCCCCCCCCCc-hh
Confidence 88888875432 22333344566777778999999999998743 122 3333322 122321000 000000 00
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 543 KGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGK 607 (701)
Q Consensus 543 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 607 (701)
..+..++ -..-+..+...|....|...+..+... .+......++......|..+.++.....
T Consensus 403 ~~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 403 SALTQGP--EMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred hhhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 0000011 122345566789999999998888765 4455556666666677887777766543
No 442
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=43.44 E-value=76 Score=30.75 Aligned_cols=73 Identities=12% Similarity=0.107 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHH
Q 037695 513 DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRT-VIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYN 586 (701)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 586 (701)
|+..|...+.--.+.|.+.+...+|.++.+.. |.|...|.. ...-+...++++.+..+|.+.+..+|. +..|.
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 44444444443334555666666666666543 344444432 222344456666666666666665555 44443
No 443
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.12 E-value=2.9e+02 Score=26.03 Aligned_cols=61 Identities=18% Similarity=0.083 Sum_probs=40.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037695 520 IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC 581 (701)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 581 (701)
+-+++...|++-++++...+.+... +-+..+|..-..+.+..=+..+|..-|...+..+|.
T Consensus 236 y~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 236 YCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 3345556677777777777776653 456666666666666666677777777777777665
No 444
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=42.89 E-value=3e+02 Score=26.02 Aligned_cols=55 Identities=11% Similarity=0.132 Sum_probs=28.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Q 037695 415 VMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCR-EGKMDGAKKFMQE 469 (701)
Q Consensus 415 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~ 469 (701)
++..+-+.++++++...++++...+...+..-.+.+..+|-. .|....+++++..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~ 62 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSS 62 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhh
Confidence 445555666666666666666666555555555555555522 3333344444433
No 445
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=42.72 E-value=3.2e+02 Score=26.37 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=14.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 037695 378 TAFLNGLCHNGKSLEAREMINT 399 (701)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~ 399 (701)
..++..+.+.|.+.+|+.+...
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHH
Confidence 4466777777777777765543
No 446
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=41.60 E-value=1.6e+02 Score=22.81 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=10.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 037695 589 IENLCSFGYLEEAGKILGKVLR 610 (701)
Q Consensus 589 ~~~~~~~g~~~~A~~~~~~~~~ 610 (701)
+......|+.++|...++++++
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3334444555555555554443
No 447
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.15 E-value=1.4e+02 Score=28.52 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=11.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 037695 587 QVIENLCSFGYLEEAGKILGKV 608 (701)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~ 608 (701)
.++..|...|++++|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555555555555555444
No 448
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=41.11 E-value=3e+02 Score=25.60 Aligned_cols=101 Identities=11% Similarity=0.041 Sum_probs=53.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C--hhHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 037695 545 LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK-C--RTAY--NQVIENLCSFGYLEEAGKILGKVLRTASKADAST 619 (701)
Q Consensus 545 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~--~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 619 (701)
+.+...-++.|+--|.-...+.+|.+.|..-....| . ...+ ..-+......|++++|+.....+-..-...|...
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 445555566666555554455555555544433333 2 2222 2346666788888888888777643333444433
Q ss_pred HHHHHH----HHHhcCChhhHHHHHHHHHh
Q 037695 620 CHVLVE----SYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 620 ~~~l~~----~~~~~g~~~~A~~~~~~~~~ 645 (701)
+..|.. -+.+.|..++|+++++.-+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 322221 23455666667666654433
No 449
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=40.89 E-value=3e+02 Score=27.50 Aligned_cols=62 Identities=16% Similarity=0.167 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695 566 EDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESY 627 (701)
Q Consensus 566 ~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 627 (701)
++...++..++..-|. ..-|-.++..+...|.++..+.+|++++..|-.|-...-..++..+
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL 185 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDIL 185 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 3444555555555444 2345555666666666666666666666666665554444444443
No 450
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.81 E-value=2.7e+02 Score=30.26 Aligned_cols=85 Identities=7% Similarity=0.043 Sum_probs=60.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695 560 CQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI 632 (701)
Q Consensus 560 ~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 632 (701)
.+..++..+.++|..-+...|. ......+.-+|.....++.|.++++++.+..+ .++.+-..+..+....|+
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~-~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDR-QSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhcc
Confidence 4567888888888877666544 12345566667777888889998888877543 255555566677788888
Q ss_pred hhhHHHHHHHHHh
Q 037695 633 PLLAYKVACRMFN 645 (701)
Q Consensus 633 ~~~A~~~~~~~~~ 645 (701)
-++|+..+.....
T Consensus 444 Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 444 SEEALTCLQKIKS 456 (872)
T ss_pred hHHHHHHHHHHHh
Confidence 8888888877665
No 451
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=40.10 E-value=1.1e+02 Score=20.24 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=16.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695 421 REGKLSEACDVVREMVKKGFFPTPVEINLLI 451 (701)
Q Consensus 421 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li 451 (701)
+.|-..++..+++.|.+.|+..++..+..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 4444455555555555555555555444443
No 452
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=39.91 E-value=74 Score=19.87 Aligned_cols=28 Identities=14% Similarity=0.029 Sum_probs=21.4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 653 KLCKKVSERLILEGKSEEADTLMLRFVE 680 (701)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 680 (701)
.+|..++..-...+++++|++=|+++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567777888888888888888877765
No 453
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.29 E-value=6.3e+02 Score=28.81 Aligned_cols=134 Identities=11% Similarity=0.080 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 037695 342 YTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRR 421 (701)
Q Consensus 342 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 421 (701)
+.+....+...|+.+....+-.-+.+ |..++.-+...+.+++|++++..-. +..++....-.+ .
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ap~L-i 570 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYAPEL-I 570 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhhhHH-H
Confidence 33444455566777766665544442 5567777888888888888775531 111111111111 1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695 422 EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE---GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGD 494 (701)
Q Consensus 422 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 494 (701)
...+.+....+..+.. ..++.....++..+.+. .....+..+++.....-...+...+|.++..|++..+
T Consensus 571 ~~~p~~tV~~wm~~~d---~~~~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 571 THSPKETVSAWMAQKD---LDPNRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred hcCcHHHHHHHHHccc---cCchhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 2223333333322222 22333444455555544 2344555555555444334577788888888877554
No 454
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.78 E-value=7.3e+02 Score=29.41 Aligned_cols=139 Identities=13% Similarity=0.037 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHH
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADA----STCH 621 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~ 621 (701)
-|..+++.+-+.+-.+.+.++-..+++.-|+ +.+++.+.......|.+-+|...+-. .||. ....
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLR 1058 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHH
Confidence 3677788888899999999988888776433 34566777777778888877665543 3343 4567
Q ss_pred HHHHHHHhcCChhhH------------HH-HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCc
Q 037695 622 VLVESYLNKGIPLLA------------YK-VACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLM-LRFVERGHIQPK 687 (701)
Q Consensus 622 ~l~~~~~~~g~~~~A------------~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~ 687 (701)
.++-.++.+|.++.- .. +++..-+..+......|..+-.-+...+++.+|-.+. +-....+.....
T Consensus 1059 qlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se~~~ 1138 (1480)
T KOG4521|consen 1059 QLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESETCM 1138 (1480)
T ss_pred HHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhcccccC
Confidence 778888888876532 11 2222222222223356666666667788888877654 444544443333
Q ss_pred hHHHHhhh
Q 037695 688 SEEHLQRQ 695 (701)
Q Consensus 688 ~~~~l~~~ 695 (701)
....|+++
T Consensus 1139 ~~~~Lekr 1146 (1480)
T KOG4521|consen 1139 TPELLEKR 1146 (1480)
T ss_pred CHHHHHHh
Confidence 33344443
No 455
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=38.17 E-value=7.1e+02 Score=29.35 Aligned_cols=114 Identities=15% Similarity=0.146 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037695 549 VVTYRTVIHRYCQVG--RVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES 626 (701)
Q Consensus 549 ~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 626 (701)
..-+..++.+|.+.+ ++++|+..+.++.+..+. .....+.-++- +-.+.++|+.++.. .|... .++-+
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~--~ae~alkyl~f---LvDvn~Ly~~ALG~---YDl~L--al~VA 881 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREEDPE--SAEEALKYLCF---LVDVNKLYDVALGT---YDLEL--ALMVA 881 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChH--HHHHHHhHhee---eccHHHHHHHHhhh---cCHHH--HHHHH
Confidence 334556777888877 788888888888765322 11111111111 11222333333221 11111 12233
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 627 YLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRF 678 (701)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (701)
-..+.++.+=+-.++++.+ ..|+..-| .+=.+.+++++|+..+.++
T Consensus 882 q~SQkDPKEYLPfL~~L~~--l~~~~rry----~ID~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 882 QQSQKDPKEYLPFLQELQK--LPPLYRRY----KIDDHLKRYEKALRHLSAC 927 (928)
T ss_pred HHhccChHHHHHHHHHHHh--CChhheee----eHhhhhCCHHHHHHHHHhh
Confidence 4455566666666666666 33332111 1334577888888877543
No 456
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=38.08 E-value=36 Score=28.33 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=17.3
Q ss_pred CCHhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037695 225 NKLAKALRFLERMQLAGITPNVLTYNCLIKG 255 (701)
Q Consensus 225 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 255 (701)
|.-..|-.+|+.|+..|.+|| .|+.|+..
T Consensus 109 gsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 444556667777777766665 35555543
No 457
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.95 E-value=3.9e+02 Score=26.19 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=17.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 431 VVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECL 471 (701)
Q Consensus 431 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 471 (701)
+++.|...++.|.-..+.-+.-.+.+.=.+..++.+|+.+.
T Consensus 265 L~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 265 LWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 34444444444444444444444444444444444444443
No 458
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=36.76 E-value=83 Score=18.80 Aligned_cols=19 Identities=5% Similarity=0.058 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHhcCCChhH
Q 037695 566 EDLLKLLEKMLSKQKCRTA 584 (701)
Q Consensus 566 ~~A~~~~~~~~~~~p~~~~ 584 (701)
+.|..+|++.+...|.+.+
T Consensus 4 dRAR~IyeR~v~~hp~~k~ 22 (32)
T PF02184_consen 4 DRARSIYERFVLVHPEVKN 22 (32)
T ss_pred HHHHHHHHHHHHhCCCchH
Confidence 4444444444444444333
No 459
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=36.73 E-value=7.6e+02 Score=29.01 Aligned_cols=249 Identities=10% Similarity=0.011 Sum_probs=129.3
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695 407 PNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLI 486 (701)
Q Consensus 407 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 486 (701)
++..+-...+..+.+.+.. .+...+..+++. ++...-...+.++.+.+........+..++.. ++..+-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHH
Confidence 5666666666666666543 344444444432 23333334444444332211112233333332 3444444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 037695 487 RGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVE 566 (701)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 566 (701)
.++...+..+ .. .+-... -.+|...-...+.++.+.+..+. +..+.. .++...-...+.++...+..+
T Consensus 706 ~aL~~~~~~~-~~-~l~~~L---~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGD-AA-LFAAAL---GDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCC-HH-HHHHHh---cCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHHHHHhcccc
Confidence 5554433111 11 222222 25566665666666666554332 222222 456666666667777666543
Q ss_pred H-HHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 567 D-LLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 567 ~-A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
. +...+..+.. ++++..-...+.++...|....+...+..+++ .++..+-...+.++...+. .++...+..+++
T Consensus 774 ~~~~~~L~~ll~-D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~ 848 (897)
T PRK13800 774 APAGDAVRALTG-DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEALT 848 (897)
T ss_pred chhHHHHHHHhc-CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHHhc
Confidence 2 3444555543 44566666777777777776555455555554 3455565666667766664 346666666664
Q ss_pred CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 646 RNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 646 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
.|+..+-...+.+|.+......+...+.++.+..
T Consensus 849 ---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~D~ 882 (897)
T PRK13800 849 ---DPHLDVRKAAVLALTRWPGDPAARDALTTALTDS 882 (897)
T ss_pred ---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHhCC
Confidence 4456666667777766533456777777776633
No 460
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.59 E-value=2.7e+02 Score=30.22 Aligned_cols=94 Identities=11% Similarity=0.105 Sum_probs=65.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-hHHHHH
Q 037695 516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVPT------VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR-TAYNQV 588 (701)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l 588 (701)
.|+..-+. .+..++..+.+.|..-... ++.| ......|.-+|....+.|.|.++++++.+.+|.. -.-..+
T Consensus 357 LWn~A~~~-F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 357 LWNTAKKL-FKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHhhHHH-HHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 45554443 4567788888877655442 3333 2345666777888999999999999999888763 334445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 037695 589 IENLCSFGYLEEAGKILGKVLRT 611 (701)
Q Consensus 589 ~~~~~~~g~~~~A~~~~~~~~~~ 611 (701)
..+....|+.++|...+......
T Consensus 435 ~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 435 LQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHhcchHHHHHHHHHHHhh
Confidence 66667789999999998887654
No 461
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=36.01 E-value=2.3e+02 Score=22.88 Aligned_cols=86 Identities=10% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChhh-----------HHHHHHHHHhCCCCCCHhh
Q 037695 588 VIENLCSFGYLEEAGKILGKVLRTASKADA--STCHVLVESYLNKGIPLL-----------AYKVACRMFNRNLIPDLKL 654 (701)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~-----------A~~~~~~~~~~~~~p~~~~ 654 (701)
.+..+.+.|+.-+|+++.++++........ .....=+.++.+.....+ +++.+.+... +.|+.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~--Lsp~~-- 77 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE--LSPDS-- 77 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc--cChhH--
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 655 CKKVSERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
+..+...++-=....+|++.+..
T Consensus 78 ----A~~L~~la~~l~s~~~Ykk~v~k 100 (111)
T PF04781_consen 78 ----AHSLFELASQLGSVKYYKKAVKK 100 (111)
T ss_pred ----HHHHHHHHHHhhhHHHHHHHHHH
No 462
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=35.69 E-value=1.9e+02 Score=24.74 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=20.9
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 037695 146 MMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAG 190 (701)
Q Consensus 146 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 190 (701)
.+++++...+..-.|.++++.+.+.+...+..|--..+..+...|
T Consensus 25 ~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 25 AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 444444544444555555555555444444444333334444333
No 463
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=34.99 E-value=5.4e+02 Score=26.72 Aligned_cols=64 Identities=17% Similarity=0.129 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 037695 585 YNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI 649 (701)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 649 (701)
...|+.-|...|++.+|.+.++++-- .+-....++.+++.+.-+.|+-..-+.+++...+.|+.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgm-PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI 575 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGM-PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGLI 575 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCC-CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce
Confidence 35678888999999999999988621 22334677888999999999988888888888887665
No 464
>PF12253 CAF1A: Chromatin assembly factor 1 subunit A; InterPro: IPR022043 The CAF-1 or chromatin assembly factor-1 consists of three subunits, and this is the first, or A []. The A domain is uniquely required for the progression of S phase in mouse cells [], independent of its ability to promote histone deposition [] but dependent on its ability to interact with HP1 - heterochromatin protein 1-rich heterochromatin domains next to centromeres that are crucial for chromosome segregation during mitosis. This HP1-CAF-1 interaction module functions as a built-in replication control for heterochromatin, which, like a control barrier, has an impact on S-phase progression in addition to DNA-based checkpoints [].
Probab=34.94 E-value=25 Score=26.08 Aligned_cols=14 Identities=36% Similarity=0.328 Sum_probs=6.0
Q ss_pred cccccccchhhhhc
Q 037695 23 EKCDFDIFAEEVEE 36 (701)
Q Consensus 23 ~~~~~~~~~~~~~~ 36 (701)
++.+.+.+++++++
T Consensus 52 ~e~GEdl~~~eeee 65 (77)
T PF12253_consen 52 EEEGEDLDSDEEEE 65 (77)
T ss_pred CCCCcccccccccc
Confidence 34444554444333
No 465
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=34.76 E-value=2.2e+02 Score=24.45 Aligned_cols=61 Identities=13% Similarity=0.102 Sum_probs=35.8
Q ss_pred HHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695 327 VNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNG 388 (701)
Q Consensus 327 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 388 (701)
...+++.|++++.. -..++..+...++.-.|.++++.+.+.+...+..|...-++.+...|
T Consensus 9 ~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 9 IERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33445566665543 34456666666666778888888877665555555444444444444
No 466
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=34.57 E-value=2.5e+02 Score=30.54 Aligned_cols=75 Identities=13% Similarity=0.226 Sum_probs=51.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 037695 414 VVMHGLRREGKLSEACDVVREMVKKG--FFPTPVEINLLIQSLCREGKMD------GAKKFMQECLNKGCAVNVVNFTSL 485 (701)
Q Consensus 414 ~ll~~~~~~g~~~~A~~~~~~m~~~~--~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~~~~~~~~~~~~~~~~l 485 (701)
.++.+|...|++..+.++++.+.... -+.-...+|..++.+.+.|.++ .|.+.++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 78899999999999999999887652 2333456788888888888754 3444444443 34477777777
Q ss_pred HHHHHh
Q 037695 486 IRGFCQ 491 (701)
Q Consensus 486 l~~~~~ 491 (701)
+.+-..
T Consensus 110 ~~~sln 115 (1117)
T COG5108 110 CQASLN 115 (1117)
T ss_pred HHhhcC
Confidence 665444
No 467
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=34.51 E-value=5.2e+02 Score=26.46 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 477 VNVVNFTSLIRGFCQKGDLEEALSLLDD 504 (701)
Q Consensus 477 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 504 (701)
.+..++..+++.+...|. ++..-+..
T Consensus 67 ln~~vL~~~v~~~~~~~s--e~~~~~l~ 92 (493)
T KOG2581|consen 67 LNGAVLYKLVSSLLSSGS--EAMDRLLR 92 (493)
T ss_pred hhHHHHHHHHHHHcCCch--HHHHHHHh
Confidence 466666666666665553 44443333
No 468
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=33.00 E-value=77 Score=29.32 Aligned_cols=57 Identities=16% Similarity=0.157 Sum_probs=47.8
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 558 RYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK 614 (701)
Q Consensus 558 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 614 (701)
...+.++.+.|.+++.+++..-|. ...|..++..--+.|+++.|.+.+.+.++..++
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 345778899999999999988777 678888888888999999999999999887643
No 469
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.80 E-value=2.5e+02 Score=26.66 Aligned_cols=61 Identities=16% Similarity=0.013 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHh----CCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 619 TCHVLVESYLNKGIPLLAYKVACRMFN----RNL-IPDLKLCKKVSERLILEGKSEEADTLMLRFV 679 (701)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (701)
....++..|...|++++|+++++.+.. .|. .+...+...+..++.+.|+.++.+.+.-++.
T Consensus 180 l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 180 LSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 334677889999999999999998854 222 2234677778888889999999888776654
No 470
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=32.53 E-value=4e+02 Score=31.73 Aligned_cols=156 Identities=13% Similarity=0.015 Sum_probs=96.5
Q ss_pred HHHHhcCCHHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------C-CC-hhHHH
Q 037695 522 DALSKNGRVEEATE------LMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK-------Q-KC-RTAYN 586 (701)
Q Consensus 522 ~~~~~~g~~~~A~~------~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~-p~-~~~~~ 586 (701)
+.....|.+.++.+ ++......-.++....|..+...+.+.|+.++|+..-.+..-. . |+ ...|.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 34445566666666 6654333323556778899999999999999998876554322 1 22 34555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC---C----CCH
Q 037695 587 QVIENLCSFGYLEEAGKILGKVLRT-----AS-KAD-ASTCHVLVESYLNKGIPLLAYKVACRMFNRNL---I----PDL 652 (701)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~----p~~ 652 (701)
.+.......++...|...+.++... +. .|. ..+++.+...+...++++.|+.+.+.+.+... . +..
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~ 1099 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETA 1099 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhh
Confidence 6665566667777777777766543 22 333 34445555555666889999999988877321 1 133
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 653 KLCKKVSERLILEGKSEEADTLMLR 677 (701)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (701)
..+..++....-.+++..|....+.
T Consensus 1100 ~~~~~~a~l~~s~~dfr~al~~ek~ 1124 (1236)
T KOG1839|consen 1100 LSYHALARLFESMKDFRNALEHEKV 1124 (1236)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 5666666666666666666554433
No 471
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=32.51 E-value=5.1e+02 Score=25.69 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 583 TAYNQVIENLCSFGYLEEAGKILGK 607 (701)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~ 607 (701)
.++...+.-||+.|+.+.|.+.+.+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3444445555555555555544443
No 472
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=32.38 E-value=4.9e+02 Score=25.48 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHH
Q 037695 514 TVTYTTIIDALSKNGRVEEATE 535 (701)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~ 535 (701)
..+|..|+.+++..|+.+-.+-
T Consensus 321 lK~yaPLL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSELELL 342 (412)
T ss_pred HHhhhHHHHHHhcCChHHHHHH
Confidence 3568889999999998876543
No 473
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.95 E-value=2.5e+02 Score=22.06 Aligned_cols=51 Identities=12% Similarity=-0.016 Sum_probs=26.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhH
Q 037695 534 TELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTA 584 (701)
Q Consensus 534 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 584 (701)
.+.+++....+....+-....|.-.|++.|+-+.|.+-|+.=....|...+
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~ 107 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGV 107 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchh
Confidence 334444444432222233334455566777777777777666655555433
No 474
>PRK13342 recombination factor protein RarA; Reviewed
Probab=31.86 E-value=6.1e+02 Score=26.41 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037695 492 KGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK 526 (701)
Q Consensus 492 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 526 (701)
..+.+.|+..+..|.+.|..|....-..++.++-.
T Consensus 243 gsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 243 GSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 35677777777777776666655544444444333
No 475
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=31.22 E-value=1.1e+02 Score=28.44 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=49.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037695 523 ALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC 581 (701)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 581 (701)
...+.++.+.+.+++.+....- +-....|..+...--+.|+++.|.+.+++.++.+|.
T Consensus 4 ~~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 3457889999999999998752 445778888888889999999999999999999886
No 476
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.18 E-value=96 Score=30.12 Aligned_cols=30 Identities=33% Similarity=0.505 Sum_probs=17.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 037695 482 FTSLIRGFCQKGDLEEALSLLDDMYLCKKD 511 (701)
Q Consensus 482 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 511 (701)
|+.-|....+.|++++|++++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445555556666666666666666655543
No 477
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=31.01 E-value=2.5e+02 Score=21.60 Aligned_cols=61 Identities=15% Similarity=0.190 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCC
Q 037695 533 ATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGY 597 (701)
Q Consensus 533 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 597 (701)
+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..+. .+| ..+...+.++...|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~--~aF~~Fl~aLreT~~ 81 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKE--GWFSKFLQALRETEH 81 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCC--cHHHHHHHHHHHcCc
Confidence 3445555555552 222223322222224455666666666655 444 334444555554444
No 478
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=30.83 E-value=63 Score=27.01 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=17.7
Q ss_pred hCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037695 153 KTKLCQGAKRVLRLMARRGIECRPEAFSYLMVA 185 (701)
Q Consensus 153 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~ 185 (701)
+.|.-.+|..+|..|.+.|.+|| .|+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 34555566666666666665554 45555543
No 479
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=30.36 E-value=23 Score=42.26 Aligned_cols=33 Identities=21% Similarity=0.281 Sum_probs=0.0
Q ss_pred CCCCcccc---------cccccccccchhhhhccCCCCCCCC
Q 037695 13 GSDNAEFD---------KSEKCDFDIFAEEVEEGEDGSDSDD 45 (701)
Q Consensus 13 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (701)
.+-.+++| |+|+++.+++|+++|+|||++.++.
T Consensus 137 ~r~l~eed~~~~~~~~~d~~~~~~~~~~~~~~~~~e~~~~~~ 178 (2849)
T PTZ00415 137 ARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEE 178 (2849)
T ss_pred hhccchhhcCcccccccCCccccccccccccccccccccccc
No 480
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.33 E-value=3.3e+02 Score=29.67 Aligned_cols=74 Identities=15% Similarity=0.317 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhCCCCCChhhHHHH
Q 037695 344 AVVNGFCRVGELDQAKKMLQQMYHH--GCKPNTVSYTAFLNGLCHNGKSL------EAREMINTSEEEWWTPNAITYSVV 415 (701)
Q Consensus 344 ~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~~~~~~~~~~~~l 415 (701)
+|..+|...|++..+.++++.+... |-+.=...||..|+...+.|.++ .|.+++++.. +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7889999999999999999988864 22333456788888888888754 3444444443 34566677666
Q ss_pred HHHHH
Q 037695 416 MHGLR 420 (701)
Q Consensus 416 l~~~~ 420 (701)
+.+-.
T Consensus 110 ~~~sl 114 (1117)
T COG5108 110 CQASL 114 (1117)
T ss_pred HHhhc
Confidence 65543
No 481
>cd08780 Death_TRADD Death Domain of Tumor Necrosis Factor Receptor 1-Associated Death Domain protein. Death domain (DD) of TRADD (TNF Receptor 1-Associated Death Domain or TNFRSF1A-associated via death domain) protein. TRADD is a central signaling adaptor for TNF-receptor 1 (TNFR1), mediating activation of Nuclear Factor -kappaB (NF-kB) and c-Jun N-terminal kinase (JNK), as well as caspase-dependent apoptosis. It also carries important immunological roles including germinal center formation, DR3-mediated T-cell stimulation, and TNFalpha-mediated inflammatory responses. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into s
Probab=30.10 E-value=2.1e+02 Score=21.92 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 037695 553 RTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKIL 605 (701)
Q Consensus 553 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 605 (701)
..+-.-|-+.|-.+.+.+++....+......+...|+.++..++...-|..++
T Consensus 36 D~I~~~y~r~gL~EqvyQ~L~~W~~~eg~~Atv~~Lv~AL~~c~l~~lAe~l~ 88 (90)
T cd08780 36 DNLAYEYDREGLYEQAYQLLRRFIQSEGKKATLQRLVQALEENGLTSLAEDLL 88 (90)
T ss_pred HHHHhhcccccHHHHHHHHHHHHHHhccccchHHHHHHHHHHccchHHHHHHh
Confidence 34444566666677777777766665555556666666666666555554443
No 482
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=29.96 E-value=6.6e+02 Score=30.12 Aligned_cols=153 Identities=17% Similarity=0.102 Sum_probs=92.7
Q ss_pred HHhcCCHHHHHH------HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HhCCCCCCHHHHHHH
Q 037695 489 FCQKGDLEEALS------LLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKM-------LSKGLVPTVVTYRTV 555 (701)
Q Consensus 489 ~~~~g~~~~A~~------~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~~~~p~~~~~~~l 555 (701)
....|.+.+|.+ ++......-.++....|..+...+.+.|+.++|+..-... ....-+-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 344556666655 5554333222444567888888888999999888765443 222222345556666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc--------CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-------CCCHHH
Q 037695 556 IHRYCQVGRVEDLLKLLEKMLSK--------QKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS-------KADAST 619 (701)
Q Consensus 556 ~~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~~ 619 (701)
.-.+...++...|...+.++... .|. ..+.+.+-..+...++++.|...++.+..... -....+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 66666777888888877776554 233 22334444455566788888888888765421 123455
Q ss_pred HHHHHHHHHhcCChhhHHHHHH
Q 037695 620 CHVLVESYLNKGIPLLAYKVAC 641 (701)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~ 641 (701)
+..+...+...|++..|+...+
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHh
Confidence 6666667777777766655443
No 483
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=29.67 E-value=1.1e+02 Score=29.86 Aligned_cols=43 Identities=16% Similarity=0.366 Sum_probs=33.0
Q ss_pred CcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037695 336 IPDVV-TYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYT 378 (701)
Q Consensus 336 ~p~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 378 (701)
.|+.. .|+..|....+.|++++|++++++..+.|+.--..+|-
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 34444 46789999999999999999999999988765444443
No 484
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=29.26 E-value=8.9e+02 Score=27.50 Aligned_cols=215 Identities=9% Similarity=0.002 Sum_probs=116.0
Q ss_pred CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---HcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 037695 139 HDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYS---RAGKLRNAMYVLSMMQKAAVAPNLLICN 215 (701)
Q Consensus 139 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 215 (701)
-+...+..||..+.+.|+++.....-..|.+. .+.++..|..-+.... ..+...++..+|++.... ..++..|.
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d--y~~v~iw~ 187 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD--YNSVPIWE 187 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc--cccchHHH
Confidence 34556778888888999988877777777665 3557777766665443 336677777788777644 33444454
Q ss_pred HHHHHHH-------ccCCHhHHHHHHHHHHhC-CCCCC--hHH---HHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHH
Q 037695 216 TAIHVLV-------VGNKLAKALRFLERMQLA-GITPN--VLT---YNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKV 282 (701)
Q Consensus 216 ~ll~~~~-------~~g~~~~A~~~~~~m~~~-g~~~~--~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 282 (701)
-.+..+. +.++++....+|++..+. |...+ ... |.-+=..|..+-..++...+|..-...+ .|..
T Consensus 188 e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~--~D~~ 265 (881)
T KOG0128|consen 188 EVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP--LDED 265 (881)
T ss_pred HHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc--chhh
Confidence 4444443 235667777788776543 22111 112 2222234444444566666766655543 3333
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695 283 SYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKML 362 (701)
Q Consensus 283 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 362 (701)
+-+.-+.-..+...++....-+..+.+ +...-+..|.+..+. ..+-...|..+|+.+-+.|..-....++
T Consensus 266 ~~~~~~~~~sk~h~~~~~~~~~~~a~~---------~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~ 335 (881)
T KOG0128|consen 266 TRGWDLSEQSKAHVYDVETKKLDDALK---------NLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIE 335 (881)
T ss_pred hhHHHHHHHHhcchHHHHhccHHHHHH---------HHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 322222222222222222222222211 112222233333332 2334456788888888888887777777
Q ss_pred HHHHHc
Q 037695 363 QQMYHH 368 (701)
Q Consensus 363 ~~~~~~ 368 (701)
+++...
T Consensus 336 eR~~~E 341 (881)
T KOG0128|consen 336 ERAVAE 341 (881)
T ss_pred HHHHHh
Confidence 776643
No 485
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.22 E-value=5.2e+02 Score=24.80 Aligned_cols=166 Identities=10% Similarity=-0.007 Sum_probs=101.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHH-
Q 037695 524 LSKNGRVEEATELMMKMLSKGLVPT--VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLE- 599 (701)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~- 599 (701)
+.+..+...|+++-...+..+ +.+ ...|...+--.. ..+..+=+++++++...+|. -..|..--...-..|+..
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lN-pAnYTVW~yRr~iL~~l-~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLN-PANYTVWQYRRVILRHL-MSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HhccccCHHHHHHHHHHHHhC-cccchHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCccc
Confidence 456677888888888888754 222 223333221111 23467778888888888776 344443333333445555
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-c-----CCHHHHHH
Q 037695 600 EAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLIL-E-----GKSEEADT 673 (701)
Q Consensus 600 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~-----g~~~~A~~ 673 (701)
.-+.+.+.|+... .-+-.+|..--+++...+.++.-+.+..++++.++. |..+|+.-.-.... . -..+.=+.
T Consensus 131 rELef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~ 208 (318)
T KOG0530|consen 131 RELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELN 208 (318)
T ss_pred chHHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHH
Confidence 5677777887754 336677888888888888899999999999887776 44455532111111 1 23444556
Q ss_pred HHHHHHHcCCCCCchHHHHh
Q 037695 674 LMLRFVERGHIQPKSEEHLQ 693 (701)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~l~ 693 (701)
+..+++...|...+.=.-|.
T Consensus 209 yt~~~I~~vP~NeSaWnYL~ 228 (318)
T KOG0530|consen 209 YTKDKILLVPNNESAWNYLK 228 (318)
T ss_pred HHHHHHHhCCCCccHHHHHH
Confidence 77777777776655544444
No 486
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=29.13 E-value=32 Score=38.92 Aligned_cols=42 Identities=19% Similarity=0.186 Sum_probs=0.0
Q ss_pred CCCCcccccccccccccchhhhhccCCCCCCCCcceeeeccc
Q 037695 13 GSDNAEFDKSEKCDFDIFAEEVEEGEDGSDSDDHFMVLDSFD 54 (701)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 54 (701)
+...+|.+|.++++.++|+|++||+++++++++..+...+++
T Consensus 856 ~~~d~~dse~~~~~~~~~e~~~~ee~~~ee~eeeee~~~~~~ 897 (1096)
T TIGR00927 856 GGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLE 897 (1096)
T ss_pred CCCCcccccccccccchhhhcccccccccccccccccccccc
No 487
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=29.00 E-value=4.9e+02 Score=24.43 Aligned_cols=127 Identities=17% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHH-HHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 536 LMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYN-QVIENLCSFGYLEEAGKILGKVLRTAS 613 (701)
Q Consensus 536 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~ 613 (701)
..+..+..|-.-....+..++--+...|+++.|+++.+.++..+-. +..|. .+...+ .++...........+.
T Consensus 70 ~V~g~L~~g~~~qd~Vl~~~mvW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v-----aeev~~~A~~~~~ag~ 144 (230)
T PHA02537 70 WVEGVLAAGAGYQDDVLMTVMVWRFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV-----AEEVANAALKAASAGE 144 (230)
T ss_pred HHHHHHHcCCCCCCCeeeEeeeeeeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH-----HHHHHHHHHHHHHcCC
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH---hhHHHHHHHH---------HhcCCHHHHHHHHHHHHHc
Q 037695 614 KADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL---KLCKKVSERL---------ILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 614 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~~ 681 (701)
+.++... ..+..+...--.|+. ..|..++..+ ...++...|..+++++.+.
T Consensus 145 ~~e~~~~-----------------~~~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l 207 (230)
T PHA02537 145 SVEPYFL-----------------RVFLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQL 207 (230)
T ss_pred CCChHHH-----------------HHHHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHh
Q ss_pred CCC
Q 037695 682 GHI 684 (701)
Q Consensus 682 ~~~ 684 (701)
+++
T Consensus 208 ~~k 210 (230)
T PHA02537 208 NDK 210 (230)
T ss_pred CCC
No 488
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=28.93 E-value=18 Score=33.27 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=0.0
Q ss_pred ccccccccccccchhhhhccCCCCCC
Q 037695 18 EFDKSEKCDFDIFAEEVEEGEDGSDS 43 (701)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 43 (701)
+.+.+++.+.+++||++|++++++++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (232)
T PRK12766 58 GLEVSEETEAEVEDEGGEEEEEEDAD 83 (232)
T ss_pred cccccccccchhcccccchhhhhhhh
No 489
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=28.57 E-value=1e+03 Score=27.99 Aligned_cols=261 Identities=12% Similarity=0.073 Sum_probs=0.0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 037695 337 PDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVM 416 (701)
Q Consensus 337 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 416 (701)
++..+-...+..+.+.+..+....+...+. .++...=...+.++.+.+........+..+... +|..+-...+
T Consensus 633 ~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~----D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~---~d~~VR~~A~ 705 (897)
T PRK13800 633 PDPGVRRTAVAVLTETTPPGFGPALVAALG----DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGS---PDPVVRAAAL 705 (897)
T ss_pred CCHHHHHHHHHHHhhhcchhHHHHHHHHHc----CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcC---CCHHHHHHHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037695 417 HGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLE 496 (701)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 496 (701)
.++...+..+. ..+-.+++. ++...-...+.++.+.+..+.....+. .++..+-...+.++...+..+
T Consensus 706 ~aL~~~~~~~~--~~l~~~L~D---~d~~VR~~Av~aL~~~~~~~~l~~~l~-------D~~~~VR~~aa~aL~~~~~~~ 773 (897)
T PRK13800 706 DVLRALRAGDA--ALFAAALGD---PDHRVRIEAVRALVSVDDVESVAGAAT-------DENREVRIAVAKGLATLGAGG 773 (897)
T ss_pred HHHHhhccCCH--HHHHHHhcC---CCHHHHHHHHHHHhcccCcHHHHHHhc-------CCCHHHHHHHHHHHHHhcccc
Q ss_pred H-HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 497 E-ALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKM 575 (701)
Q Consensus 497 ~-A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 575 (701)
. +...+..+.. .++...-...+.++...|....+...+..+.+ .++...-...+.++...+. +++...+..+
T Consensus 774 ~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 774 APAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred chhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhccc-cchHHHHHHH
Q ss_pred HhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695 576 LSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESY 627 (701)
Q Consensus 576 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 627 (701)
++ +|+...-...+.++.+......+...+..+++ ..|..+-.....++
T Consensus 847 L~-D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~---D~d~~Vr~~A~~aL 894 (897)
T PRK13800 847 LT-DPHLDVRKAAVLALTRWPGDPAARDALTTALT---DSDADVRAYARRAL 894 (897)
T ss_pred hc-CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh---CCCHHHHHHHHHHH
No 490
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=27.43 E-value=1.7e+02 Score=18.65 Aligned_cols=32 Identities=19% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHhhhcCCCHHHHHHHHh-cCCChHHHHHHH
Q 037695 97 GELRNLLRSLKPRQICAVLR-SQADERVALQFF 128 (701)
Q Consensus 97 ~~l~~~~~~~~~~~~~~~l~-~~~~~~~Al~~f 128 (701)
..|...+|.++...+..+|. ..|+.+.|...+
T Consensus 7 ~~L~~mFP~l~~~~I~~~L~~~~g~ve~~i~~L 39 (43)
T smart00546 7 HDLKDMFPNLDEEVIKAVLEANNGNVEATINNL 39 (43)
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
No 491
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.33 E-value=9.2e+02 Score=27.05 Aligned_cols=231 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHH
Q 037695 426 SEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVN---VVNFTSLIRGFCQKGDLEEALSLL 502 (701)
Q Consensus 426 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~ 502 (701)
....++++...-..-......+..=++.....-+-++-..++.+|..+=-.|+ ..+...++-.|....+++..+++.
T Consensus 145 ~R~kq~Lk~vq~~ssah~REkflsD~RkAR~~y~G~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLV 224 (1226)
T KOG4279|consen 145 HRMKQVLKSVQVESSAHSREKFLSDLRKAREIYDGDQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLV 224 (1226)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHH
Q ss_pred HHHHhCCCCCCHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cC
Q 037695 503 DDMYLCKKDPDTVT----------YTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ---------VG 563 (701)
Q Consensus 503 ~~~~~~~~~p~~~~----------~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---------~g 563 (701)
+.+.. -||..- |.-.++--.+-|+-++|+...-.|++..-+..+..|+...+.|-. .+
T Consensus 225 e~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~ 301 (1226)
T KOG4279|consen 225 EDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAE 301 (1226)
T ss_pred HHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchh
Q ss_pred CHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHH
Q 037695 564 RVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRM 643 (701)
Q Consensus 564 ~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 643 (701)
..+.|.+.|+++.+..|...+--.++..+...|.-=+--.-++.+-- .|...+.+.|..+.-..++
T Consensus 302 s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~Igm-----------kLn~LlgrKG~leklq~YW--- 367 (1226)
T KOG4279|consen 302 SLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQIGM-----------KLNSLLGRKGALEKLQEYW--- 367 (1226)
T ss_pred hHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHHHH-----------HHHHHhhccchHHHHHHHH---
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 644 FNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 644 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
|..+|-. +-.-++++.+|++.-+.|.+..+
T Consensus 368 -------dV~~y~~---asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 368 -------DVATYFE---ASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred -------hHHHhhh---hhhhccCHHHHHHHHHHHhccCC
No 492
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=27.20 E-value=3.3e+02 Score=21.89 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHH-----CCCCCCHHHHHHHHH
Q 037695 145 YMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQK-----AAVAPNLLICNTAIH 219 (701)
Q Consensus 145 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~ll~ 219 (701)
..++.-+.+..|+=....+-..+.+.+ -|..++..|...|..++|++++.+... ..-++.......++.
T Consensus 14 ~~~l~~llr~~N~C~~~~~e~~L~~~~------~~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~ 87 (108)
T PF10366_consen 14 PSLLGPLLRLPNYCDLEEVEEVLKEHG------KYQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQ 87 (108)
T ss_pred HHHHHHHHccCCcCCHHHHHHHHHHcC------CHHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHH
Q ss_pred HHHccCC
Q 037695 220 VLVVGNK 226 (701)
Q Consensus 220 ~~~~~g~ 226 (701)
.+.+.|.
T Consensus 88 yL~~L~~ 94 (108)
T PF10366_consen 88 YLQKLGN 94 (108)
T ss_pred HHHhCCh
No 493
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=27.12 E-value=1.3e+02 Score=21.57 Aligned_cols=59 Identities=7% Similarity=0.045 Sum_probs=0.0
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695 335 CIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAR 394 (701)
Q Consensus 335 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (701)
+.|....++.++..+++-.-.+.++..+.+....| ..+..+|..-++.+++..-+..|.
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaReQF~~Ral 62 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLAREQFLKRAL 62 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHH
No 494
>KOG3214 consensus Uncharacterized Zn ribbon-containing protein [Function unknown]
Probab=26.88 E-value=29 Score=26.74 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred CCCCcccccccccccccchhhhhccC
Q 037695 13 GSDNAEFDKSEKCDFDIFAEEVEEGE 38 (701)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 38 (701)
+.+..-.++.|++.+++|+|++++++
T Consensus 84 a~~~~vd~~nd~e~~s~eee~ded~e 109 (109)
T KOG3214|consen 84 AEDDVVDEENDEEEESEEEEDDEDDE 109 (109)
T ss_pred cccchhhhhccccccCchhhcccccC
No 495
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=26.72 E-value=1.7e+02 Score=18.48 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHhhhcCCCHHHHHHHH-hcCCChHHHHHHH
Q 037695 97 GELRNLLRSLKPRQICAVL-RSQADERVALQFF 128 (701)
Q Consensus 97 ~~l~~~~~~~~~~~~~~~l-~~~~~~~~Al~~f 128 (701)
..++..+|.+++..+..+| ...++.+.|....
T Consensus 6 ~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~L 38 (42)
T PF02845_consen 6 QQLQEMFPDLDREVIEAVLQANNGDVEAAIDAL 38 (42)
T ss_dssp HHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHH
No 496
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.33 E-value=7.4e+02 Score=25.64 Aligned_cols=218 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-
Q 037695 338 DVVTYTAVVNGFCRVGELDQAKKMLQQ-------MYHHGCKP-----NTVSYTAFLNGLCHNGKSLEAREMINTSEEEW- 404 (701)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~a~~~~~~-------~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 404 (701)
+...-..++..+....++.+.++..+. ....|..| .-.+...|++.++-.|++..|+++++.+.-..
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Q ss_pred ------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695 405 ------WTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVN 478 (701)
Q Consensus 405 ------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 478 (701)
......+|.-+.-+|.-.+++.+|.++|...+-.-.+-.......--+.=.-.+..++...++.-+.......-
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~l 233 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRL 233 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCC
Q ss_pred HHHHHHHHHHH-------HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 037695 479 VVNFTSLIRGF-------CQKGDLEEALSLLDDMYLCKKDPD-TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVV 550 (701)
Q Consensus 479 ~~~~~~ll~~~-------~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 550 (701)
..+....++-- .+.|+.+.-.++|....-.-+.|. +..+..-.........-....-.++++..+..-|+..
T Consensus 234 de~i~~~lkeky~ek~~kmq~gd~~~f~elF~~acPKFIsp~~pp~~~~~~~~~~~e~~~~Ql~~Fl~eV~~q~~l~~lR 313 (404)
T PF10255_consen 234 DESISSQLKEKYGEKMEKMQRGDEEAFEELFSFACPKFISPVSPPDYDGPSQNKNKEPYRRQLKLFLDEVKQQQKLPTLR 313 (404)
T ss_pred CHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhhCCCccCCCCCCCcccccchhhhhHHHHHHHHHHHHHHHhhhhhHHH
Q ss_pred HHHHH
Q 037695 551 TYRTV 555 (701)
Q Consensus 551 ~~~~l 555 (701)
.|..|
T Consensus 314 SyLKL 318 (404)
T PF10255_consen 314 SYLKL 318 (404)
T ss_pred HHHHh
No 497
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=26.29 E-value=1.7e+02 Score=28.32 Aligned_cols=61 Identities=13% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 037695 587 QVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP 650 (701)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 650 (701)
..+.-..+.|+.++|..+|+.++...+. ++.++..++...-...+.-+|-.+|-+++. +.|
T Consensus 121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALt--isP 181 (472)
T KOG3824|consen 121 KAAGRSRKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALT--ISP 181 (472)
T ss_pred HHHHHHHhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeee--eCC
No 498
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=26.10 E-value=7.3e+02 Score=25.44 Aligned_cols=126 Identities=17% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC------hhHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037695 554 TVIHRYCQVGRVEDLLKLLEKMLSKQKC------RTAYNQVIENLC--SFGYLEEAGKILGKVLRTASKADASTCHVLVE 625 (701)
Q Consensus 554 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 625 (701)
..+..+.+.+++..|.++|+++....++ ...+..+..+|. ..-++++|...++++.......-..+.+.-..
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~~ 214 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDELE 214 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHHH
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHH------hcCCHHHHHHHHHHHHH
Q 037695 626 SYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLI------LEGKSEEADTLMLRFVE 680 (701)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~------~~g~~~~A~~~~~~~~~ 680 (701)
...+....-.+...-+++....-. ...++..+.+.+. ..|++++|.-.+-++++
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e 274 (380)
T TIGR02710 215 DVIKRNASILPEIIGSRNGRREAK-RRPFLPLLGDLLANAERRATQGRYDDAAARLYRALE 274 (380)
T ss_pred HHHHhHHhhcchhhhccchhhhhc-ccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 499
>PF09090 MIF4G_like_2: MIF4G like; InterPro: IPR015174 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 2", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=26.00 E-value=5.9e+02 Score=24.33 Aligned_cols=115 Identities=12% Similarity=0.112 Sum_probs=0.0
Q ss_pred hcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcC--ChhhHHHHHHHHHh--CCC
Q 037695 577 SKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTAS----KADASTCHVLVESYLNKG--IPLLAYKVACRMFN--RNL 648 (701)
Q Consensus 577 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~--~~~ 648 (701)
...|.......+...+.+....++...+++.+..... .++......++.+++..| .+..+..++++... +.+
T Consensus 6 e~~P~~~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~i~v~~q~ll~~GSkS~SH~~~~lery~~~Lk~l 85 (253)
T PF09090_consen 6 ESLPFHALAQKLLDLIRKKAPPEEISELLEEIEEPAEEHGSDFDKFVIDVFVQCLLHIGSKSFSHVLSALERYKEVLKEL 85 (253)
T ss_dssp TTSTTHHHHHHHHHHHHTT--HHHHHHHHTTS------------HHHHHHHHHHHHHHTTTSHHHHHHHHHHTHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHcCCCHHHHHHHHHhccccccccccchhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh
Q ss_pred -CCCHhhHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCchHHH
Q 037695 649 -IPDLKLCKKVSERLIL--EGKSEEADTLMLRFVERGHIQPKSEEH 691 (701)
Q Consensus 649 -~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~ 691 (701)
.++...-..++.+..+ ..+..-+.-++++++..+..+|.....
T Consensus 86 ~~~~~~~q~~il~~v~~~W~~~~q~~~li~dkll~~~ii~~~~Vv~ 131 (253)
T PF09090_consen 86 EAESEEAQFWILDAVFRFWKNNPQMGFLIIDKLLNYGIISPSAVVN 131 (253)
T ss_dssp -TSSHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTTSS-HHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHhcCCceehHHHHHHHhcCCCCHHHHHH
No 500
>PTZ00415 transmission-blocking target antigen s230; Provisional
Probab=26.00 E-value=34 Score=41.02 Aligned_cols=30 Identities=33% Similarity=0.271 Sum_probs=0.0
Q ss_pred ccCCCCcccccccccccccchhhhhccCCC
Q 037695 11 LFGSDNAEFDKSEKCDFDIFAEEVEEGEDG 40 (701)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (701)
.|.-+.++++|+|+++.+++||++|++|++
T Consensus 150 ~~~~d~~~~~~~~~~~~~~~~~e~~~~~~~ 179 (2849)
T PTZ00415 150 NFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179 (2849)
T ss_pred ccccCCcccccccccccccccccccccccc
Done!