Query 037695
Match_columns 701
No_of_seqs 778 out of 3912
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 05:16:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037695.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037695hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 3.7E-40 1.3E-44 362.9 44.2 498 139-692 82-590 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.6E-39 8.7E-44 356.3 43.6 494 112-662 91-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-26 5.6E-31 239.3 48.7 379 254-666 7-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 4.6E-26 1.6E-30 235.9 48.9 285 340-631 102-387 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.1E-28 3.7E-33 259.5 25.1 216 228-457 7-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 2.1E-28 7.3E-33 257.3 25.5 205 323-527 9-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 3E-24 1E-28 231.3 39.0 437 176-645 6-477 (514)
8 2gw1_A Mitochondrial precursor 99.9 2.1E-23 7E-28 224.7 40.7 459 141-623 6-489 (514)
9 3fp2_A TPR repeat-containing p 99.9 1.3E-22 4.6E-27 219.7 37.5 433 175-645 24-490 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 5.6E-22 1.9E-26 209.6 41.3 342 336-686 23-415 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 1.3E-21 4.5E-26 206.8 42.4 335 279-645 24-409 (450)
12 3fp2_A TPR repeat-containing p 99.9 4.7E-22 1.6E-26 215.4 38.8 436 140-614 24-494 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 1.1E-19 3.7E-24 185.5 40.9 326 338-694 2-348 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 7.8E-19 2.7E-23 179.1 41.9 315 316-663 15-351 (359)
15 3hym_B Cell division cycle pro 99.9 7.1E-19 2.4E-23 177.2 32.0 290 371-668 19-321 (330)
16 3hym_B Cell division cycle pro 99.9 2.1E-18 7.3E-23 173.7 34.9 286 336-627 19-314 (330)
17 2xm6_A Protein corresponding t 99.9 2.1E-16 7.1E-21 168.4 51.8 385 245-682 38-468 (490)
18 2xm6_A Protein corresponding t 99.8 2.7E-16 9.2E-21 167.6 52.4 365 266-684 27-435 (490)
19 2ooe_A Cleavage stimulation fa 99.8 1.1E-16 3.8E-21 172.4 47.4 427 208-683 10-494 (530)
20 2ooe_A Cleavage stimulation fa 99.8 9.5E-17 3.3E-21 172.9 45.7 389 243-687 10-460 (530)
21 1xi4_A Clathrin heavy chain; a 99.8 4.4E-15 1.5E-19 165.0 57.3 422 175-676 984-1440(1630)
22 1xi4_A Clathrin heavy chain; a 99.8 5.1E-15 1.7E-19 164.6 56.2 411 103-569 948-1375(1630)
23 1fch_A Peroxisomal targeting s 99.8 1.5E-18 5.1E-23 177.9 26.6 288 388-680 39-358 (368)
24 4eqf_A PEX5-related protein; a 99.8 1.8E-18 6E-23 177.2 24.4 264 408-677 64-352 (365)
25 1fch_A Peroxisomal targeting s 99.8 8.3E-18 2.8E-22 172.3 27.1 290 352-645 38-358 (368)
26 4g1t_A Interferon-induced prot 99.8 2.1E-16 7.3E-21 167.8 36.3 379 280-691 50-469 (472)
27 3mkr_A Coatomer subunit epsilo 99.8 3.9E-17 1.3E-21 160.3 28.0 246 385-645 10-263 (291)
28 3cv0_A Peroxisome targeting si 99.8 2.1E-17 7.3E-22 166.0 26.9 267 410-681 22-315 (327)
29 3mkr_A Coatomer subunit epsilo 99.8 1.1E-16 3.7E-21 157.2 28.1 268 417-698 7-281 (291)
30 4g1t_A Interferon-induced prot 99.8 1.3E-15 4.6E-20 161.6 37.2 372 245-647 50-460 (472)
31 4eqf_A PEX5-related protein; a 99.8 5.5E-17 1.9E-21 166.0 25.3 263 377-642 68-352 (365)
32 3cv0_A Peroxisome targeting si 99.8 8.8E-17 3E-21 161.5 26.1 280 339-645 21-314 (327)
33 1b89_A Protein (clathrin heavy 99.8 4.2E-16 1.4E-20 155.8 27.7 239 188-491 15-253 (449)
34 1b89_A Protein (clathrin heavy 99.7 1.1E-16 3.8E-21 159.9 21.9 282 152-500 14-303 (449)
35 3uq3_A Heat shock protein STI1 99.7 1.5E-15 5.3E-20 146.6 25.7 225 445-682 6-237 (258)
36 2pl2_A Hypothetical conserved 99.7 1.2E-15 4E-20 143.0 22.6 198 476-679 2-212 (217)
37 3u4t_A TPR repeat-containing p 99.7 5.1E-15 1.7E-19 144.3 27.0 248 445-695 4-264 (272)
38 3uq3_A Heat shock protein STI1 99.7 6.2E-15 2.1E-19 142.3 25.7 223 410-645 6-235 (258)
39 3spa_A Mtrpol, DNA-directed RN 99.7 9.2E-17 3.2E-21 173.0 9.8 116 142-257 128-247 (1134)
40 3spa_A Mtrpol, DNA-directed RN 99.7 1.3E-16 4.6E-21 171.8 11.0 117 409-525 127-247 (1134)
41 2ho1_A Type 4 fimbrial biogene 99.7 3.1E-14 1E-18 137.0 26.7 210 479-692 37-249 (252)
42 1ouv_A Conserved hypothetical 99.7 3.4E-13 1.2E-17 131.4 33.4 225 443-683 5-253 (273)
43 2vq2_A PILW, putative fimbrial 99.6 7.1E-14 2.4E-18 131.6 26.7 212 478-692 7-222 (225)
44 2q7f_A YRRB protein; TPR, prot 99.6 1.9E-14 6.6E-19 137.4 22.0 211 478-692 22-233 (243)
45 4e6h_A MRNA 3'-END-processing 99.6 2.1E-11 7.1E-16 131.9 47.9 452 194-694 50-583 (679)
46 2h6f_A Protein farnesyltransfe 99.6 4.5E-14 1.6E-18 143.1 24.8 233 445-684 98-351 (382)
47 3u4t_A TPR repeat-containing p 99.6 8.1E-14 2.8E-18 135.7 25.1 243 412-659 6-262 (272)
48 2pl2_A Hypothetical conserved 99.6 5.1E-14 1.7E-18 131.8 22.6 198 443-644 4-212 (217)
49 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.7E-14 9.2E-19 139.3 20.8 247 421-675 17-269 (275)
50 3e4b_A ALGK; tetratricopeptide 99.6 7E-14 2.4E-18 146.5 24.4 221 446-681 178-421 (452)
51 2h6f_A Protein farnesyltransfe 99.6 1.5E-13 5.2E-18 139.3 25.5 247 409-663 97-364 (382)
52 1ouv_A Conserved hypothetical 99.6 3.3E-12 1.1E-16 124.4 33.9 224 408-647 5-252 (273)
53 2ho1_A Type 4 fimbrial biogene 99.6 4.4E-13 1.5E-17 128.9 27.2 203 445-652 38-242 (252)
54 2vq2_A PILW, putative fimbrial 99.6 5.8E-13 2E-17 125.3 27.4 206 443-652 7-215 (225)
55 3e4b_A ALGK; tetratricopeptide 99.6 1.9E-13 6.4E-18 143.2 26.2 334 319-683 18-389 (452)
56 2q7f_A YRRB protein; TPR, prot 99.6 1.1E-13 3.7E-18 132.2 21.8 203 443-651 22-225 (243)
57 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.7E-13 5.8E-18 133.6 22.0 228 456-687 17-250 (275)
58 4a1s_A PINS, partner of inscut 99.6 7E-14 2.4E-18 145.4 20.3 265 418-683 57-374 (411)
59 4e6h_A MRNA 3'-END-processing 99.6 1.3E-10 4.4E-15 125.7 45.6 447 124-614 51-573 (679)
60 3vtx_A MAMA; tetratricopeptide 99.6 6E-13 2E-17 121.0 22.8 168 513-683 4-172 (184)
61 3sf4_A G-protein-signaling mod 99.6 1.4E-13 4.8E-18 142.7 20.6 303 372-675 7-370 (406)
62 3ro2_A PINS homolog, G-protein 99.6 1.5E-13 5.3E-18 138.1 19.5 268 415-683 11-334 (338)
63 3vtx_A MAMA; tetratricopeptide 99.5 1.6E-12 5.6E-17 118.1 23.1 170 478-652 4-174 (184)
64 2ond_A Cleavage stimulation fa 99.5 9.3E-12 3.2E-16 123.4 30.4 222 461-686 33-275 (308)
65 3sf4_A G-protein-signaling mod 99.5 4.2E-13 1.4E-17 139.0 19.7 300 336-636 6-366 (406)
66 3ulq_A Response regulator aspa 99.5 1.2E-12 4E-17 134.6 22.3 230 450-682 109-369 (383)
67 2ond_A Cleavage stimulation fa 99.5 1.6E-11 5.4E-16 121.8 28.9 217 426-646 33-270 (308)
68 4abn_A Tetratricopeptide repea 99.5 8.8E-13 3E-17 139.0 20.4 193 478-675 101-315 (474)
69 4a1s_A PINS, partner of inscut 99.5 7.3E-13 2.5E-17 137.6 18.9 273 341-645 50-371 (411)
70 4i17_A Hypothetical protein; T 99.5 6.2E-12 2.1E-16 118.7 22.7 209 477-695 5-223 (228)
71 3nf1_A KLC 1, kinesin light ch 99.5 5.5E-13 1.9E-17 132.5 15.5 236 446-683 29-309 (311)
72 4abn_A Tetratricopeptide repea 99.5 2.4E-12 8.1E-17 135.8 20.9 212 425-642 84-317 (474)
73 3ulq_A Response regulator aspa 99.5 9.1E-12 3.1E-16 127.9 24.3 293 349-645 22-367 (383)
74 3ro2_A PINS homolog, G-protein 99.5 1.9E-12 6.6E-17 130.0 18.6 273 341-645 7-331 (338)
75 3as5_A MAMA; tetratricopeptide 99.4 1.6E-11 5.3E-16 111.4 20.3 169 515-686 9-178 (186)
76 4gyw_A UDP-N-acetylglucosamine 99.4 6.9E-12 2.3E-16 137.4 20.6 162 515-680 10-173 (723)
77 3q15_A PSP28, response regulat 99.4 6.8E-11 2.3E-15 121.1 26.0 229 450-681 107-365 (378)
78 3nf1_A KLC 1, kinesin light ch 99.4 3.3E-12 1.1E-16 126.9 12.7 233 412-645 30-306 (311)
79 4gyw_A UDP-N-acetylglucosamine 99.4 4.4E-11 1.5E-15 131.0 22.1 167 476-645 6-173 (723)
80 3as5_A MAMA; tetratricopeptide 99.3 6.6E-11 2.2E-15 107.2 19.8 164 479-645 8-172 (186)
81 4i17_A Hypothetical protein; T 99.3 1.1E-10 3.8E-15 110.0 21.8 206 441-658 4-220 (228)
82 1hz4_A MALT regulatory protein 99.3 1.3E-09 4.5E-14 111.3 29.7 198 448-645 97-321 (373)
83 1hz4_A MALT regulatory protein 99.3 8.1E-10 2.8E-14 112.8 28.0 267 416-682 21-323 (373)
84 3q15_A PSP28, response regulat 99.3 5.7E-10 2E-14 114.1 25.6 306 336-645 7-364 (378)
85 3qky_A Outer membrane assembly 99.3 3.5E-10 1.2E-14 109.1 20.5 194 478-690 14-233 (261)
86 3edt_B KLC 2, kinesin light ch 99.3 6E-11 2.1E-15 115.7 15.2 227 455-681 12-281 (283)
87 3urz_A Uncharacterized protein 99.2 1.3E-10 4.5E-15 107.6 15.6 127 555-684 60-189 (208)
88 1qqe_A Vesicular transport pro 99.2 1E-10 3.5E-15 114.8 14.6 207 459-682 32-270 (292)
89 3edt_B KLC 2, kinesin light ch 99.2 1E-10 3.5E-15 114.0 14.4 225 420-645 12-280 (283)
90 3mv2_B Coatomer subunit epsilo 99.2 7.5E-09 2.6E-13 99.2 25.3 184 463-653 85-287 (310)
91 3qky_A Outer membrane assembly 99.2 9.2E-10 3.1E-14 106.1 19.5 187 441-645 12-223 (261)
92 3mv2_B Coatomer subunit epsilo 99.2 7.1E-09 2.4E-13 99.3 24.2 259 418-698 22-299 (310)
93 3urz_A Uncharacterized protein 99.2 9.7E-10 3.3E-14 101.7 17.8 136 519-659 59-197 (208)
94 1qqe_A Vesicular transport pro 99.2 5.8E-10 2E-14 109.4 16.9 205 462-687 3-234 (292)
95 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.3E-09 7.9E-14 100.6 19.6 189 478-687 3-219 (225)
96 2fo7_A Synthetic consensus TPR 99.2 2.5E-09 8.5E-14 90.7 18.1 131 551-683 3-134 (136)
97 4ga2_A E3 SUMO-protein ligase 99.1 2.4E-10 8.2E-15 99.4 10.8 140 523-666 6-148 (150)
98 2pzi_A Probable serine/threoni 99.1 1.3E-09 4.5E-14 120.2 19.0 171 490-666 402-582 (681)
99 2fo7_A Synthetic consensus TPR 99.1 5.6E-09 1.9E-13 88.5 17.7 127 517-645 4-131 (136)
100 4ga2_A E3 SUMO-protein ligase 99.1 2.9E-10 1E-14 98.9 9.4 131 555-688 3-136 (150)
101 2vsy_A XCC0866; transferase, g 99.1 4.2E-09 1.4E-13 114.1 20.0 152 492-646 2-157 (568)
102 3dra_A Protein farnesyltransfe 99.1 9.7E-08 3.3E-12 92.6 27.3 218 460-681 49-287 (306)
103 3rjv_A Putative SEL1 repeat pr 99.1 1.9E-08 6.7E-13 93.1 21.1 177 497-683 4-199 (212)
104 2r5s_A Uncharacterized protein 99.1 1.9E-09 6.6E-14 96.7 13.6 156 522-679 14-171 (176)
105 2uy1_A Cleavage stimulation fa 99.0 3.7E-07 1.3E-11 95.9 32.7 382 188-645 6-412 (493)
106 3rjv_A Putative SEL1 repeat pr 99.0 2.3E-08 8E-13 92.5 21.1 173 463-647 5-198 (212)
107 3qou_A Protein YBBN; thioredox 99.0 8.9E-09 3E-13 100.5 18.9 166 513-680 116-283 (287)
108 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.3E-08 7.8E-13 93.7 20.3 188 443-647 3-214 (225)
109 2r5s_A Uncharacterized protein 99.0 3.5E-09 1.2E-13 94.9 13.7 161 482-645 9-172 (176)
110 2uy1_A Cleavage stimulation fa 99.0 4.6E-07 1.6E-11 95.2 31.5 344 318-680 28-412 (493)
111 2pzi_A Probable serine/threoni 99.0 2.3E-09 7.7E-14 118.3 14.4 159 525-688 402-570 (681)
112 4gco_A Protein STI-1; structur 99.0 6.9E-09 2.4E-13 86.9 13.7 108 582-692 13-121 (126)
113 2ifu_A Gamma-SNAP; membrane fu 99.0 5E-09 1.7E-13 103.5 14.5 222 422-673 4-253 (307)
114 3gyz_A Chaperone protein IPGC; 99.0 1E-09 3.6E-14 94.8 7.9 108 575-685 28-137 (151)
115 2vgx_A Chaperone SYCD; alterna 99.0 4.4E-09 1.5E-13 91.0 11.9 114 572-688 10-125 (148)
116 3dra_A Protein farnesyltransfe 99.0 2.9E-07 9.9E-12 89.3 25.3 219 423-645 47-286 (306)
117 3qou_A Protein YBBN; thioredox 99.0 2E-08 7E-13 97.9 17.4 165 478-645 116-283 (287)
118 2ifu_A Gamma-SNAP; membrane fu 98.9 1.5E-08 5.3E-13 100.0 16.0 224 386-638 3-253 (307)
119 2vsy_A XCC0866; transferase, g 98.9 2.8E-08 9.6E-13 107.6 18.9 155 457-614 2-160 (568)
120 4gco_A Protein STI-1; structur 98.9 4.7E-08 1.6E-12 81.7 15.1 107 550-659 14-122 (126)
121 1hh8_A P67PHOX, NCF-2, neutrop 98.9 1.6E-07 5.3E-12 87.0 19.2 122 520-645 12-149 (213)
122 3u3w_A Transcriptional activat 98.9 6.5E-07 2.2E-11 87.6 24.3 162 520-681 81-266 (293)
123 2e2e_A Formate-dependent nitri 98.9 4E-08 1.4E-12 88.0 14.3 125 561-687 22-150 (177)
124 1a17_A Serine/threonine protei 98.8 1.3E-07 4.6E-12 83.3 16.9 129 550-680 14-145 (166)
125 2xcb_A PCRH, regulatory protei 98.8 2.8E-08 9.6E-13 85.3 11.7 94 551-645 20-114 (142)
126 3gyz_A Chaperone protein IPGC; 98.8 7.3E-08 2.5E-12 83.1 14.2 102 549-653 36-138 (151)
127 2qfc_A PLCR protein; TPR, HTH, 98.8 3.6E-07 1.2E-11 89.4 20.9 160 520-680 81-265 (293)
128 3q7a_A Farnesyltransferase alp 98.8 3.7E-06 1.3E-10 82.3 27.2 221 458-682 68-332 (349)
129 1hh8_A P67PHOX, NCF-2, neutrop 98.8 3.3E-07 1.1E-11 84.8 19.1 128 482-614 9-153 (213)
130 4f3v_A ESX-1 secretion system 98.8 1.2E-07 4E-12 89.7 15.8 201 491-694 18-249 (282)
131 3u3w_A Transcriptional activat 98.8 8.7E-07 3E-11 86.7 22.7 161 485-645 81-265 (293)
132 3gw4_A Uncharacterized protein 98.8 6.7E-08 2.3E-12 88.7 13.6 156 526-682 4-177 (203)
133 2c2l_A CHIP, carboxy terminus 98.8 3.8E-08 1.3E-12 95.6 12.3 195 478-682 3-200 (281)
134 1a17_A Serine/threonine protei 98.8 3.4E-07 1.2E-11 80.7 16.8 128 516-645 15-145 (166)
135 3dss_A Geranylgeranyl transfer 98.8 3.8E-06 1.3E-10 81.8 25.4 184 495-684 90-307 (331)
136 1p5q_A FKBP52, FK506-binding p 98.7 1.9E-07 6.5E-12 93.2 16.3 126 551-679 149-292 (336)
137 2qfc_A PLCR protein; TPR, HTH, 98.7 1.9E-06 6.6E-11 84.2 23.3 165 481-645 77-265 (293)
138 2vgx_A Chaperone SYCD; alterna 98.7 5E-08 1.7E-12 84.3 10.4 97 548-645 20-117 (148)
139 2lni_A Stress-induced-phosphop 98.7 2.7E-07 9.1E-12 77.8 14.6 116 548-666 15-132 (133)
140 4gcn_A Protein STI-1; structur 98.7 2E-07 6.8E-12 78.0 13.4 94 586-682 12-113 (127)
141 1na0_A Designed protein CTPR3; 98.7 6.4E-07 2.2E-11 74.3 16.2 95 550-645 10-105 (125)
142 2e2e_A Formate-dependent nitri 98.7 1.3E-07 4.3E-12 84.7 12.3 118 526-645 22-143 (177)
143 2vyi_A SGTA protein; chaperone 98.7 4.2E-07 1.4E-11 76.2 14.9 117 549-667 12-129 (131)
144 4gcn_A Protein STI-1; structur 98.7 1.7E-07 6E-12 78.4 12.0 108 549-658 8-122 (127)
145 2vyi_A SGTA protein; chaperone 98.7 6.7E-07 2.3E-11 74.9 15.6 118 514-633 12-130 (131)
146 1na0_A Designed protein CTPR3; 98.7 9.5E-07 3.2E-11 73.2 16.3 113 515-629 10-123 (125)
147 2lni_A Stress-induced-phosphop 98.7 5.1E-07 1.7E-11 76.0 14.4 117 513-631 15-132 (133)
148 3upv_A Heat shock protein STI1 98.7 3.6E-07 1.2E-11 76.4 13.2 95 550-645 5-100 (126)
149 3upv_A Heat shock protein STI1 98.6 5.9E-07 2E-11 75.0 14.3 97 583-682 5-102 (126)
150 3q7a_A Farnesyltransferase alp 98.6 1.5E-05 5.1E-10 78.0 25.8 220 422-645 67-330 (349)
151 2xcb_A PCRH, regulatory protei 98.6 1.7E-07 5.9E-12 80.3 10.5 118 571-690 6-124 (142)
152 3gw4_A Uncharacterized protein 98.6 5.4E-07 1.8E-11 82.5 14.2 154 491-645 4-175 (203)
153 1p5q_A FKBP52, FK506-binding p 98.6 9.1E-07 3.1E-11 88.2 16.7 96 549-645 196-293 (336)
154 2fbn_A 70 kDa peptidylprolyl i 98.6 8.2E-07 2.8E-11 81.1 14.4 128 552-682 41-187 (198)
155 2kck_A TPR repeat; tetratricop 98.6 7E-07 2.4E-11 72.4 12.3 102 582-686 6-111 (112)
156 3sz7_A HSC70 cochaperone (SGT) 98.6 1.3E-06 4.3E-11 77.0 14.8 102 548-652 10-112 (164)
157 4f3v_A ESX-1 secretion system 98.6 1.5E-06 5.2E-11 82.1 15.8 123 521-645 109-236 (282)
158 3q49_B STIP1 homology and U bo 98.6 1E-06 3.5E-11 74.7 13.4 98 547-645 7-105 (137)
159 1elw_A TPR1-domain of HOP; HOP 98.5 2.9E-06 1E-10 69.4 15.6 94 551-645 6-100 (118)
160 3dss_A Geranylgeranyl transfer 98.5 7.9E-05 2.7E-09 72.6 27.8 197 460-662 90-319 (331)
161 1hxi_A PEX5, peroxisome target 98.5 6.3E-07 2.2E-11 74.1 11.3 95 586-683 21-116 (121)
162 2c2l_A CHIP, carboxy terminus 98.5 2.1E-07 7.1E-12 90.4 9.5 165 513-685 3-168 (281)
163 1hxi_A PEX5, peroxisome target 98.5 8.8E-07 3E-11 73.3 11.4 93 552-645 20-113 (121)
164 3sz7_A HSC70 cochaperone (SGT) 98.5 1.9E-06 6.6E-11 75.8 14.3 100 513-613 10-110 (164)
165 3q49_B STIP1 homology and U bo 98.5 1.7E-06 5.9E-11 73.3 13.4 101 582-684 9-109 (137)
166 1elw_A TPR1-domain of HOP; HOP 98.5 4.4E-06 1.5E-10 68.3 15.5 109 514-624 4-113 (118)
167 1elr_A TPR2A-domain of HOP; HO 98.5 1.1E-06 3.8E-11 73.6 11.7 95 551-645 6-107 (131)
168 2fbn_A 70 kDa peptidylprolyl i 98.5 2.8E-06 9.5E-11 77.5 14.7 127 517-645 41-185 (198)
169 2dba_A Smooth muscle cell asso 98.5 5.5E-06 1.9E-10 71.1 15.8 96 549-645 28-127 (148)
170 3ro3_A PINS homolog, G-protein 98.5 2E-06 6.9E-11 75.1 13.2 132 551-682 11-159 (164)
171 2xev_A YBGF; tetratricopeptide 98.4 2.7E-06 9.3E-11 71.1 13.0 91 555-645 8-104 (129)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 2E-06 6.9E-11 89.8 14.4 87 583-672 318-405 (457)
173 2hr2_A Hypothetical protein; a 98.4 1.8E-06 6E-11 73.5 10.9 97 585-683 14-133 (159)
174 2kck_A TPR repeat; tetratricop 98.4 2.7E-06 9.2E-11 68.8 11.5 97 549-646 6-106 (112)
175 2if4_A ATFKBP42; FKBP-like, al 98.4 6.3E-07 2.2E-11 89.4 9.2 155 514-688 179-335 (338)
176 2dba_A Smooth muscle cell asso 98.4 1.3E-05 4.4E-10 68.7 16.1 108 513-623 27-139 (148)
177 1elr_A TPR2A-domain of HOP; HO 98.4 3.6E-06 1.2E-10 70.3 12.1 110 582-693 4-119 (131)
178 2xev_A YBGF; tetratricopeptide 98.4 9.5E-06 3.3E-10 67.7 14.6 104 585-689 5-113 (129)
179 3rkv_A Putative peptidylprolyl 98.4 2.4E-06 8.3E-11 74.9 11.2 96 549-645 11-125 (162)
180 3rkv_A Putative peptidylprolyl 98.4 5.9E-06 2E-10 72.4 13.6 98 515-612 12-127 (162)
181 3k9i_A BH0479 protein; putativ 98.4 4.6E-07 1.6E-11 74.6 5.9 83 562-645 3-89 (117)
182 1wao_1 Serine/threonine protei 98.3 2.7E-06 9.1E-11 89.2 12.6 116 524-641 16-134 (477)
183 4b4t_Q 26S proteasome regulato 98.3 2.5E-05 8.6E-10 81.1 20.0 195 451-645 11-244 (434)
184 1wao_1 Serine/threonine protei 98.3 1.1E-06 3.7E-11 92.2 8.8 120 554-676 11-134 (477)
185 1ihg_A Cyclophilin 40; ppiase 98.3 7.6E-06 2.6E-10 82.5 14.2 89 582-673 273-362 (370)
186 2hr2_A Hypothetical protein; a 98.3 4.5E-06 1.5E-10 71.0 10.3 93 552-645 14-130 (159)
187 1dce_A Protein (RAB geranylger 98.3 4.6E-05 1.6E-09 81.3 20.3 160 529-691 44-231 (567)
188 4b4t_Q 26S proteasome regulato 98.3 6.1E-05 2.1E-09 78.1 20.7 197 381-577 11-244 (434)
189 3ro3_A PINS homolog, G-protein 98.2 5.7E-06 2E-10 72.1 10.8 129 517-645 12-157 (164)
190 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 1.1E-05 3.7E-10 84.2 13.8 138 478-637 267-405 (457)
191 3k9i_A BH0479 protein; putativ 98.2 2.9E-06 1E-10 69.6 7.4 85 527-611 3-90 (117)
192 1zu2_A Mitochondrial import re 98.2 4.2E-06 1.4E-10 71.1 7.5 96 561-659 14-131 (158)
193 1ihg_A Cyclophilin 40; ppiase 98.1 2E-05 6.9E-10 79.4 13.7 89 548-637 272-361 (370)
194 1dce_A Protein (RAB geranylger 98.1 6.3E-05 2.2E-09 80.2 18.2 173 493-670 43-244 (567)
195 2if4_A ATFKBP42; FKBP-like, al 98.1 6.4E-06 2.2E-10 82.1 9.2 148 478-645 178-327 (338)
196 3n71_A Histone lysine methyltr 98.0 2.2E-05 7.4E-10 81.7 11.4 124 559-682 319-465 (490)
197 1klx_A Cysteine rich protein B 98.0 0.00017 5.9E-09 60.8 14.7 110 564-682 10-127 (138)
198 2l6j_A TPR repeat-containing p 97.9 6.6E-06 2.2E-10 66.5 4.6 62 550-611 5-67 (111)
199 1zu2_A Mitochondrial import re 97.9 1.9E-05 6.3E-10 67.1 7.1 97 593-692 13-131 (158)
200 2kat_A Uncharacterized protein 97.9 5.9E-05 2E-09 61.4 9.7 78 567-645 3-81 (115)
201 2l6j_A TPR repeat-containing p 97.9 5.6E-05 1.9E-09 60.9 9.0 93 582-677 4-103 (111)
202 1klx_A Cysteine rich protein B 97.9 0.00037 1.3E-08 58.8 14.1 110 529-647 10-127 (138)
203 1na3_A Designed protein CTPR2; 97.8 0.0002 6.8E-09 55.0 11.1 76 551-627 11-87 (91)
204 3n71_A Histone lysine methyltr 97.8 6.5E-05 2.2E-09 78.0 10.2 89 488-576 318-420 (490)
205 2kat_A Uncharacterized protein 97.8 0.00018 6.3E-09 58.4 10.6 79 532-611 3-82 (115)
206 3ma5_A Tetratricopeptide repea 97.7 0.00018 6.1E-09 56.7 9.2 64 548-611 6-70 (100)
207 3ly7_A Transcriptional activat 97.6 0.00032 1.1E-08 68.5 11.5 70 614-685 274-343 (372)
208 1na3_A Designed protein CTPR2; 97.6 0.00052 1.8E-08 52.6 10.7 81 514-595 9-90 (91)
209 3ma5_A Tetratricopeptide repea 97.6 0.00025 8.4E-09 55.9 7.9 63 582-645 7-69 (100)
210 2kc7_A BFR218_protein; tetratr 97.3 0.00032 1.1E-08 55.0 5.8 56 589-645 7-63 (99)
211 3ly7_A Transcriptional activat 97.3 0.0034 1.2E-07 61.3 13.3 71 582-656 277-347 (372)
212 2kc7_A BFR218_protein; tetratr 97.1 0.00072 2.5E-08 52.9 6.3 59 555-613 6-66 (99)
213 1pc2_A Mitochondria fission pr 97.1 0.0034 1.2E-07 52.6 9.5 64 582-645 32-99 (152)
214 3qww_A SET and MYND domain-con 97.0 0.0014 4.8E-08 66.9 8.4 25 584-608 342-366 (433)
215 3bee_A Putative YFRE protein; 97.0 0.0081 2.8E-07 46.1 10.7 63 582-645 6-71 (93)
216 3bee_A Putative YFRE protein; 96.9 0.0052 1.8E-07 47.2 9.0 69 546-614 3-75 (93)
217 2v5f_A Prolyl 4-hydroxylase su 96.9 0.0062 2.1E-07 48.0 9.7 68 583-652 6-79 (104)
218 3qwp_A SET and MYND domain-con 96.9 0.0041 1.4E-07 63.5 10.7 87 559-645 297-399 (429)
219 3u64_A Protein TP_0956; tetrat 96.9 0.022 7.4E-07 53.3 14.2 85 565-649 179-272 (301)
220 3qww_A SET and MYND domain-con 96.9 0.0049 1.7E-07 62.8 10.9 83 528-610 312-410 (433)
221 3mkq_A Coatomer beta'-subunit; 96.8 0.082 2.8E-06 59.4 21.8 166 448-671 633-802 (814)
222 1pc2_A Mitochondria fission pr 96.8 0.0081 2.8E-07 50.3 9.6 81 531-612 15-101 (152)
223 3qwp_A SET and MYND domain-con 96.7 0.013 4.5E-07 59.8 13.0 88 523-610 296-399 (429)
224 3u64_A Protein TP_0956; tetrat 96.6 0.016 5.3E-07 54.2 11.0 92 530-623 179-283 (301)
225 3mkq_A Coatomer beta'-subunit; 96.2 0.18 6.1E-06 56.6 19.6 47 349-401 662-708 (814)
226 1nzn_A CGI-135 protein, fissio 96.1 0.027 9.2E-07 45.2 8.6 87 598-686 17-108 (126)
227 2v5f_A Prolyl 4-hydroxylase su 96.1 0.095 3.3E-06 41.0 11.8 66 548-613 4-77 (104)
228 3lvg_A Clathrin heavy chain 1; 95.9 2.7E-06 9.4E-11 84.0 -18.4 232 142-433 55-286 (624)
229 1wy6_A Hypothetical protein ST 95.7 0.66 2.3E-05 37.3 15.8 136 526-683 19-156 (172)
230 4h7y_A Dual specificity protei 95.6 0.088 3E-06 43.3 9.4 54 596-650 74-127 (161)
231 3lvg_A Clathrin heavy chain 1; 95.3 0.00065 2.2E-08 67.5 -4.5 231 139-395 81-325 (624)
232 1nzn_A CGI-135 protein, fissio 95.0 0.1 3.6E-06 41.8 8.1 69 581-651 34-106 (126)
233 3mkq_B Coatomer subunit alpha; 94.9 1 3.4E-05 38.7 14.5 24 515-538 35-58 (177)
234 4ady_A RPN2, 26S proteasome re 94.8 6.1 0.00021 43.8 39.1 25 249-273 233-257 (963)
235 4h7y_A Dual specificity protei 94.4 0.26 8.8E-06 40.6 9.1 105 511-616 10-128 (161)
236 1y8m_A FIS1; mitochondria, unk 94.0 0.82 2.8E-05 37.3 11.2 66 580-645 37-105 (144)
237 3o48_A Mitochondria fission 1 93.9 0.38 1.3E-05 38.7 9.0 64 582-645 40-106 (134)
238 1y8m_A FIS1; mitochondria, unk 93.8 0.86 2.9E-05 37.2 11.0 76 613-688 35-113 (144)
239 4b4t_P 26S proteasome regulato 93.8 5.4 0.00018 40.6 20.0 93 518-610 141-246 (445)
240 4gns_B Protein CSD3, chitin bi 93.8 0.28 9.5E-06 53.1 10.7 52 625-678 345-397 (754)
241 3mkq_B Coatomer subunit alpha; 93.7 3 0.0001 35.7 16.6 99 349-468 15-113 (177)
242 4b4t_P 26S proteasome regulato 93.4 6.4 0.00022 40.0 19.8 187 458-645 30-246 (445)
243 3o48_A Mitochondria fission 1 93.3 0.78 2.7E-05 36.9 9.9 65 546-610 37-106 (134)
244 3ffl_A Anaphase-promoting comp 93.3 0.36 1.2E-05 40.7 8.2 122 544-678 13-148 (167)
245 1wy6_A Hypothetical protein ST 92.6 3.4 0.00011 33.3 18.6 57 556-612 98-155 (172)
246 4gns_B Protein CSD3, chitin bi 92.1 0.77 2.6E-05 49.7 11.2 124 483-608 252-397 (754)
247 3txn_A 26S proteasome regulato 91.3 12 0.00042 36.9 18.8 166 479-645 19-209 (394)
248 2wpv_A GET4, UPF0363 protein Y 91.3 10 0.00035 36.0 22.5 165 483-681 37-217 (312)
249 3lpz_A GET4 (YOR164C homolog); 91.1 11 0.00038 36.1 24.8 81 581-680 135-215 (336)
250 4ady_A RPN2, 26S proteasome re 90.7 24 0.00082 39.2 39.5 253 384-645 384-657 (963)
251 4fhn_B Nucleoporin NUP120; pro 90.3 8.6 0.00029 44.7 18.5 191 449-645 817-1049(1139)
252 1v54_E Cytochrome C oxidase po 89.6 2.7 9.2E-05 31.8 8.5 63 529-591 25-88 (109)
253 1zbp_A Hypothetical protein VP 89.6 8.2 0.00028 35.5 13.7 119 558-686 6-134 (273)
254 3ffl_A Anaphase-promoting comp 89.5 1.8 6.1E-05 36.5 8.6 30 550-579 123-152 (167)
255 3txn_A 26S proteasome regulato 88.9 19 0.00066 35.5 21.9 167 410-577 20-209 (394)
256 2ff4_A Probable regulatory pro 86.7 4 0.00014 40.7 11.0 57 552-608 174-231 (388)
257 4fhn_B Nucleoporin NUP120; pro 86.2 17 0.00057 42.3 17.3 84 584-669 901-988 (1139)
258 2ff4_A Probable regulatory pro 86.2 5.3 0.00018 39.8 11.6 70 586-656 175-249 (388)
259 1v54_E Cytochrome C oxidase po 85.2 4.3 0.00015 30.7 7.4 59 427-486 28-86 (109)
260 2y69_E Cytochrome C oxidase su 84.3 11 0.00039 30.2 9.8 63 529-591 68-131 (152)
261 2wpv_A GET4, UPF0363 protein Y 83.7 31 0.001 32.8 21.5 81 547-644 132-215 (312)
262 1zbp_A Hypothetical protein VP 82.8 4.8 0.00016 37.0 8.5 60 590-652 5-64 (273)
263 3lpz_A GET4 (YOR164C homolog); 78.4 48 0.0017 31.7 26.6 111 412-537 38-159 (336)
264 4b4t_R RPN7, 26S proteasome re 78.2 12 0.00041 37.8 10.7 95 551-645 133-236 (429)
265 4b4t_R RPN7, 26S proteasome re 77.0 14 0.00049 37.2 10.9 98 481-578 133-237 (429)
266 2y69_E Cytochrome C oxidase su 76.7 11 0.00037 30.3 7.4 58 428-486 72-129 (152)
267 3esl_A Checkpoint serine/threo 74.0 29 0.001 30.2 10.3 51 565-615 95-148 (202)
268 3esl_A Checkpoint serine/threo 73.1 36 0.0012 29.7 10.6 57 595-651 92-149 (202)
269 1qsa_A Protein (soluble lytic 66.9 1.3E+02 0.0046 31.7 35.9 51 559-609 295-346 (618)
270 2uwj_G Type III export protein 65.0 42 0.0014 25.3 8.5 78 424-509 21-98 (115)
271 2p58_C Putative type III secre 64.4 44 0.0015 25.2 9.5 78 424-509 22-99 (116)
272 2uwj_G Type III export protein 62.3 48 0.0016 25.0 7.7 51 488-544 48-98 (115)
273 4a1g_A Mitotic checkpoint seri 61.7 61 0.0021 26.8 9.4 48 636-683 84-132 (152)
274 2p58_C Putative type III secre 61.5 50 0.0017 24.9 8.6 51 488-544 49-99 (116)
275 2wvi_A Mitotic checkpoint seri 59.9 59 0.002 27.3 9.1 47 636-682 79-126 (164)
276 2wvi_A Mitotic checkpoint seri 57.7 79 0.0027 26.5 9.5 52 601-652 79-131 (164)
277 4a1g_A Mitotic checkpoint seri 57.4 81 0.0028 26.1 10.2 55 599-653 82-137 (152)
278 1oyz_A Hypothetical protein YI 52.9 1.4E+02 0.0047 27.4 23.2 136 532-682 128-264 (280)
279 2d2s_A Exocyst complex compone 49.5 93 0.0032 28.0 9.4 22 485-506 24-45 (235)
280 1o9d_A 14-3-3-like protein C; 48.0 1.6E+02 0.0055 26.9 10.7 58 484-541 13-73 (260)
281 4aez_C MAD3, mitotic spindle c 47.9 56 0.0019 29.0 7.4 49 635-683 132-181 (223)
282 2br9_A 14-3-3E, 14-3-3 protein 47.6 1.6E+02 0.0054 26.5 11.1 57 484-540 10-67 (234)
283 3uzd_A 14-3-3 protein gamma; s 46.6 1.6E+02 0.0056 26.6 10.4 48 634-681 148-203 (248)
284 1wdy_A 2-5A-dependent ribonucl 46.2 41 0.0014 30.9 7.1 18 147-164 8-25 (285)
285 2qx5_A Nucleoporin NIC96; mRNA 44.9 3.1E+02 0.011 29.1 19.3 80 345-435 300-382 (661)
286 3ltm_A Alpha-REP4; protein eng 43.9 1.6E+02 0.0054 25.5 20.8 142 139-296 31-172 (211)
287 4b4t_S RPN3, 26S proteasome re 42.4 2.9E+02 0.0099 28.3 12.6 65 515-579 232-300 (523)
288 3eiq_C Programmed cell death p 42.3 2.3E+02 0.008 27.3 11.5 75 585-660 220-296 (358)
289 3iqu_A 14-3-3 protein sigma; s 42.0 1.5E+02 0.0051 26.6 9.3 48 634-681 150-205 (236)
290 3ltj_A Alpharep-4; protein eng 41.2 1.7E+02 0.0058 25.0 20.4 174 139-355 26-199 (201)
291 3ubw_A 14-3-3E, 14-3-3 protein 41.1 2.1E+02 0.0072 26.1 12.7 48 634-681 173-228 (261)
292 3pvs_A Replication-associated 37.8 3.3E+02 0.011 27.3 13.4 20 528-547 269-288 (447)
293 3kae_A CDC27, possible protein 37.7 1.8E+02 0.0063 24.5 15.6 38 653-690 115-152 (242)
294 4aez_C MAD3, mitotic spindle c 36.3 97 0.0033 27.5 7.1 51 600-650 132-183 (223)
295 4ets_A Ferric uptake regulatio 35.3 1.1E+02 0.0038 25.6 7.2 68 123-191 15-84 (162)
296 1bpo_A Protein (clathrin); cla 34.0 3.5E+02 0.012 27.1 11.2 111 110-226 334-444 (494)
297 3bu8_A Telomeric repeat-bindin 33.9 1.6E+02 0.0055 25.8 7.7 28 556-583 121-148 (235)
298 1wdy_A 2-5A-dependent ribonucl 33.6 64 0.0022 29.6 6.2 48 345-396 8-58 (285)
299 2r9g_A AAA ATPase, central reg 33.2 2.4E+02 0.0082 24.4 9.7 37 491-528 26-62 (204)
300 1ya0_A SMG-7 transcript varian 33.0 2.9E+02 0.01 28.2 11.2 74 520-594 158-232 (497)
301 4b4t_S RPN3, 26S proteasome re 32.7 1.5E+02 0.005 30.4 8.7 65 582-646 231-299 (523)
302 2nsz_A Programmed cell death p 32.6 1.9E+02 0.0064 23.0 8.0 95 483-578 11-111 (129)
303 3eu9_A Huntingtin-interacting 30.9 79 0.0027 27.9 6.2 16 254-269 47-62 (240)
304 2r9g_A AAA ATPase, central reg 30.8 2.7E+02 0.0091 24.2 10.0 33 387-420 27-59 (204)
305 1k1a_A B-cell lymphoma 3-encod 30.4 1.6E+02 0.0056 25.8 8.3 17 255-271 85-101 (241)
306 3bge_A Predicted ATPase; struc 30.1 2.7E+02 0.0092 24.1 8.5 38 491-528 19-56 (201)
307 3bge_A Predicted ATPase; struc 30.1 2.5E+02 0.0086 24.3 8.3 33 387-419 20-52 (201)
308 3mv2_A Coatomer subunit alpha; 30.1 3.6E+02 0.012 25.5 11.1 26 620-645 210-235 (325)
309 2fe3_A Peroxide operon regulat 29.7 2.1E+02 0.0072 23.2 7.9 44 147-190 27-70 (145)
310 4gq2_M Nucleoporin NUP120; bet 29.2 5.7E+02 0.02 28.7 13.8 108 252-368 816-926 (950)
311 1k1a_A B-cell lymphoma 3-encod 29.0 1.7E+02 0.0058 25.7 8.2 51 218-268 13-65 (241)
312 2npm_A 14-3-3 domain containin 29.0 3.3E+02 0.011 24.8 12.1 58 484-541 33-94 (260)
313 2zu6_B Programmed cell death p 28.8 1.7E+02 0.0057 27.7 7.9 70 585-655 169-240 (307)
314 3eyy_A Putative iron uptake re 28.5 1.5E+02 0.0052 24.1 6.8 56 133-190 11-66 (145)
315 1wgl_A TOLL-interacting protei 28.5 1.3E+02 0.0046 20.0 5.2 36 96-131 13-49 (59)
316 3ctd_A Putative ATPase, AAA fa 28.3 3E+02 0.01 24.1 9.2 58 387-444 48-110 (213)
317 1ug3_A EIF4GI, eukaryotic prot 27.6 3.6E+02 0.012 25.7 10.4 23 215-237 15-37 (339)
318 2ijq_A Hypothetical protein; s 27.1 2.6E+02 0.0089 23.3 7.8 49 155-203 46-102 (161)
319 2ion_A PDCD4, programmed cell 25.8 1.7E+02 0.0057 24.2 6.5 94 378-472 13-112 (152)
320 2crb_A Nuclear receptor bindin 25.7 1E+02 0.0035 22.8 4.3 22 654-675 17-38 (97)
321 4gq2_M Nucleoporin NUP120; bet 25.2 4E+02 0.014 30.0 11.6 128 520-666 816-950 (950)
322 3eu9_A Huntingtin-interacting 24.7 91 0.0031 27.5 5.4 13 346-358 46-58 (240)
323 1n11_A Ankyrin; clathrin, BAND 24.6 71 0.0024 31.9 5.0 47 628-679 352-400 (437)
324 3t5v_B Nuclear mRNA export pro 24.4 2E+02 0.0069 28.9 8.0 60 622-681 181-249 (455)
325 3ctd_A Putative ATPase, AAA fa 24.2 3.6E+02 0.012 23.6 9.2 38 491-528 47-84 (213)
326 2xig_A Ferric uptake regulatio 23.5 2.7E+02 0.0093 22.7 7.5 69 121-190 7-75 (150)
327 2d2s_A Exocyst complex compone 23.2 4E+02 0.014 23.8 11.7 32 278-309 88-119 (235)
328 2fe3_A Peroxide operon regulat 23.1 3E+02 0.01 22.2 8.0 62 235-297 11-72 (145)
329 1qsa_A Protein (soluble lytic 22.4 7E+02 0.024 26.2 38.9 98 120-226 54-151 (618)
330 3ltm_A Alpha-REP4; protein eng 22.4 3.7E+02 0.013 23.0 22.0 111 174-296 31-141 (211)
331 2ynq_A ESSB; membrane protein, 22.4 2.4E+02 0.0084 23.3 6.6 23 623-645 79-101 (161)
332 1mzb_A Ferric uptake regulatio 22.2 2.7E+02 0.0094 22.1 7.2 55 135-190 12-67 (136)
333 1zl8_A LIN-7; heterodimer, alp 21.9 43 0.0015 21.3 1.6 19 633-651 9-27 (53)
334 2ijq_A Hypothetical protein; s 21.9 3.5E+02 0.012 22.5 8.1 55 627-681 42-104 (161)
335 3jxi_A Vanilloid receptor-rela 21.4 79 0.0027 28.6 4.2 56 148-203 9-73 (260)
336 3pvs_A Replication-associated 21.1 6.2E+02 0.021 25.2 13.8 33 421-453 267-299 (447)
337 4ets_A Ferric uptake regulatio 21.1 2E+02 0.0067 24.0 6.2 68 229-297 15-85 (162)
338 1mzb_A Ferric uptake regulatio 20.8 3.1E+02 0.011 21.8 7.2 60 237-297 9-69 (136)
339 3kea_A K1L; tropism, ANK repea 20.7 2.2E+02 0.0075 26.2 7.3 13 538-550 212-224 (285)
340 3jxi_A Vanilloid receptor-rela 20.5 37 0.0013 31.0 1.7 55 346-400 9-72 (260)
341 3t5v_B Nuclear mRNA export pro 20.4 6.6E+02 0.022 25.2 11.3 62 248-309 178-248 (455)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.7e-40 Score=362.95 Aligned_cols=498 Identities=11% Similarity=0.006 Sum_probs=283.0
Q ss_pred CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037695 139 HDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAI 218 (701)
Q Consensus 139 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 218 (701)
+++..|+.++..+.+.|++++|..+|++|... .|+..++..++.+|.+.|++++|..+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 45556666666666666666666666666542 345566666666666666666666666665432 45566666666
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChh
Q 037695 219 HVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIK 298 (701)
Q Consensus 219 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~ 298 (701)
.+|.+.|++++|..+|+++... +.. ...+.+.+ -...|.+++..+|+.++.+|.+.|+++
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~----~~~-----~~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPF----RKD-----EKNANKLL-----------MQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTT----C--------------------------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhhHHHHHHHHhccCCc----ccc-----cccccccc-----------ccccccchhHHHHHHHHHHHHHcCCHH
Confidence 6666666666666666632111 000 00000000 001123344555666666666665555
Q ss_pred HHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH--HHH-HHHHHHcCCCCCHH
Q 037695 299 EVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQA--KKM-LQQMYHHGCKPNTV 375 (701)
Q Consensus 299 ~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a--~~~-~~~~~~~~~~~~~~ 375 (701)
+|.++|+.+... + +.+...+..+...+...+..+.+ ..+ +..+...+..+...
T Consensus 218 ~A~~~~~~~~~~-----------------------~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 218 RAKECYKEALMV-----------------------D-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp HHHHHHHHHHHH-----------------------C-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred HHHHHHHHHHHh-----------------------C-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 555555555431 0 11222333333222222111111 111 22333333233344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695 376 SYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLC 455 (701)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 455 (701)
+|+.++..|.+.|++++|.++|+++.+. +++..+++.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.
T Consensus 274 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 350 (597)
T 2xpi_A 274 LYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLH 350 (597)
T ss_dssp HHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHH
Confidence 4555555566666666666666665543 3556666666666666666666666666666553 334555666666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037695 456 REGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATE 535 (701)
Q Consensus 456 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 535 (701)
+.|++++|..+++.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.+
T Consensus 351 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 351 ESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666666544 24456666666666666666666666666665532 2345566666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 037695 536 LMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRT--- 611 (701)
Q Consensus 536 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 611 (701)
+|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+..|. ..++..++.+|.+.|++++|..+|+++++.
T Consensus 429 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 429 AYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 666666653 445666666666666667777777777666666555 556666667777777777777777666655
Q ss_pred -CCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695 612 -ASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK 687 (701)
Q Consensus 612 -~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 687 (701)
+..|+ ..+|..++.+|.+.|++++|+..++++.+.+ | +..++..++.+|.+.|++++|.++|+++++..|..+.
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 585 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS--TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH
Confidence 33455 5667777777777777777777777776633 3 4566677777777777777777777777776665544
Q ss_pred hHHHH
Q 037695 688 SEEHL 692 (701)
Q Consensus 688 ~~~~l 692 (701)
....|
T Consensus 586 ~~~~l 590 (597)
T 2xpi_A 586 ASDLL 590 (597)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-39 Score=356.28 Aligned_cols=494 Identities=12% Similarity=0.035 Sum_probs=397.6
Q ss_pred HHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 037695 112 CAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGK 191 (701)
Q Consensus 112 ~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~ 191 (701)
...+...|+++.|+.+|..+... .|+..++..++.+|.+.|++++|..+|+.+... ++++.+++.++.+|.+.|+
T Consensus 91 ~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~ 165 (597)
T 2xpi_A 91 RHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYD 165 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhh
Confidence 34455679999999999988744 467789999999999999999999999988653 5799999999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHH
Q 037695 192 LRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDE 271 (701)
Q Consensus 192 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 271 (701)
+++|..+|+++. |+.. ....+.+.+. ...+.+++..+|+.++.+|.+.|++++|.++|++
T Consensus 166 ~~~A~~~~~~~~-----~~~~----~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 225 (597)
T 2xpi_A 166 WQGALNLLGETN-----PFRK----DEKNANKLLM-----------QDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKE 225 (597)
T ss_dssp HHHHHHHHCSSC-----TTC--------------C-----------CCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhccC-----Cccc----cccccccccc-----------cccccchhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999643 2110 0011111111 1234566788899999999999999999999999
Q ss_pred chhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHH-HHHHHHcCCCcCHHHHHHHHHHHH
Q 037695 272 MPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKEL-VNQMSQMGCIPDVVTYTAVVNGFC 350 (701)
Q Consensus 272 m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~li~~~~ 350 (701)
|.+.+ +.+...+..+...+...+... ... +..+ +..+...+..+...+|+.++..|.
T Consensus 226 ~~~~~-p~~~~~~~~l~~~~~~~~~~~--~~~-------------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (597)
T 2xpi_A 226 ALMVD-AKCYEAFDQLVSNHLLTADEE--WDL-------------------VLKLNYSTYSKEDAAFLRSLYMLKLNKTS 283 (597)
T ss_dssp HHHHC-TTCHHHHHHHHHTTCSCHHHH--HHH-------------------HHHSCTHHHHGGGHHHHHHHHHTTSCTTT
T ss_pred HHHhC-chhhHHHHHHHHhhcccchhH--HHH-------------------HHhcCCcccccchHHHHHHHHHHHHHHHc
Confidence 88763 123444554443332221111 111 1111 233333344455667788888999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 037695 351 RVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACD 430 (701)
Q Consensus 351 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 430 (701)
+.|++++|.++|+.+... +++..+++.++.+|.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..
T Consensus 284 ~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 360 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYL 360 (597)
T ss_dssp THHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHH
T ss_pred CcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999998875 5789999999999999999999999999998765 4578889999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037695 431 VVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK 510 (701)
Q Consensus 431 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~ 510 (701)
+++.+.+.. +.+..++..++..|.+.|++++|..+|+++.+. .+.+..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 361 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 437 (597)
T 2xpi_A 361 ISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM-DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF- 437 (597)
T ss_dssp HHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 999998764 667889999999999999999999999999876 34578899999999999999999999999998864
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC--h
Q 037695 511 DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK------QKC--R 582 (701)
Q Consensus 511 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~--~ 582 (701)
+.+..+|..++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+. .|. .
T Consensus 438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~ 516 (597)
T 2xpi_A 438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516 (597)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHH
Confidence 4578899999999999999999999999999864 567899999999999999999999999999887 555 5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHH
Q 037695 583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSER 661 (701)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 661 (701)
.++..++.+|.+.|++++|..+++++++.+ +.+..+|..++.+|...|++++|.+.++++++ +.|+ ...+..++.+
T Consensus 517 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~l~~~ 593 (597)
T 2xpi_A 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIMASDLLKRA 593 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChHHHHHHHHH
Confidence 789999999999999999999999999876 44889999999999999999999999999999 5554 4666666655
Q ss_pred H
Q 037695 662 L 662 (701)
Q Consensus 662 ~ 662 (701)
|
T Consensus 594 ~ 594 (597)
T 2xpi_A 594 L 594 (597)
T ss_dssp T
T ss_pred H
Confidence 4
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.7e-26 Score=239.27 Aligned_cols=379 Identities=11% Similarity=0.029 Sum_probs=228.1
Q ss_pred HHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHc
Q 037695 254 KGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQM 333 (701)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 333 (701)
..+.+.|++++|.+.+..+.... +.+...+..+...+...|++++|...++.... .
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~-----------------------~ 62 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK-----------------------Q 62 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------H
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------------c
Confidence 34445555555555555554431 11233344444444455555444444444332 1
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 037695 334 GCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYS 413 (701)
Q Consensus 334 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 413 (701)
.+.+..+|..+..+|.+.|++++|+..|+++.... +.+..+|..+..++...|++++|...|.++.+.. +.+...+.
T Consensus 63 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 139 (388)
T 1w3b_A 63 -NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRS 139 (388)
T ss_dssp -CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHH
T ss_pred -CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence 13345556666666666666666666666665542 2234456666666666666666666666665542 22333445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695 414 VVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG 493 (701)
Q Consensus 414 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 493 (701)
.+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...|..+...+...|
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~ 217 (388)
T 1w3b_A 140 DLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEAR 217 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 55555666666666666666666553 3345566666666666666666666666666652 334556666666677777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 494 DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLE 573 (701)
Q Consensus 494 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 573 (701)
++++|+..|++..... +.+..++..+..+|...|++++|...|+++.+.. +.++.+|..++.++.+.|++++|.+.|+
T Consensus 218 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 295 (388)
T 1w3b_A 218 IFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYN 295 (388)
T ss_dssp CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777777666532 2245666667777777777777777777776653 3346667777777777777777777777
Q ss_pred HHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-
Q 037695 574 KMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD- 651 (701)
Q Consensus 574 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~- 651 (701)
++++..|. ..++..++..+...|++++|...++++++.. +.+..++..++..|.+.|++++|+..++++++ +.|+
T Consensus 296 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~ 372 (388)
T 1w3b_A 296 TALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTF 372 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTC
T ss_pred HHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCC
Confidence 77766665 5666777777777777777777777776653 33566677777777777777777777777776 4443
Q ss_pred HhhHHHHHHHHHhcC
Q 037695 652 LKLCKKVSERLILEG 666 (701)
Q Consensus 652 ~~~~~~l~~~~~~~g 666 (701)
...+..++..+...|
T Consensus 373 ~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 373 ADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHhHHHHHHHcc
Confidence 356666666665544
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=4.6e-26 Score=235.94 Aligned_cols=285 Identities=15% Similarity=0.087 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 037695 340 VTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGL 419 (701)
Q Consensus 340 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 419 (701)
.+|..+..++.+.|++++|...|+.+.... +.+...+..+...+...|++++|.+.|.++.... +.+..+|..+...+
T Consensus 102 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 179 (388)
T 1w3b_A 102 DGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVF 179 (388)
T ss_dssp HHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 345555555555555555555555555432 1123344444555555555555555555555432 23345555566666
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695 420 RREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEAL 499 (701)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 499 (701)
...|++++|...|+++.+.+ +.+...+..+...+...|++++|...++++.... +.+..++..+..+|...|++++|+
T Consensus 180 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 257 (388)
T 1w3b_A 180 NAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAI 257 (388)
T ss_dssp HTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 66666666666666666553 3345566666666667777777777776666552 335666777777777777777777
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037695 500 SLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ 579 (701)
Q Consensus 500 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 579 (701)
..|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+..++..+...+.+.|++++|...++++++..
T Consensus 258 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 258 DTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7777777643 2345667777777777777777777777777653 5567777777777777888888888888877777
Q ss_pred CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695 580 KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKG 631 (701)
Q Consensus 580 p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 631 (701)
|. ..++..++.+|.+.|++++|...++++++..+ .+...|..++..+...|
T Consensus 336 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHHHHcc
Confidence 66 56777777788888888888888887777543 35666777776666554
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.1e-28 Score=259.54 Aligned_cols=216 Identities=14% Similarity=0.147 Sum_probs=182.3
Q ss_pred hHHHHHHHHHHhCCCCCCh-HHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 037695 228 AKALRFLERMQLAGITPNV-LTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEK 306 (701)
Q Consensus 228 ~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~ 306 (701)
..+..+.+.+.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+...+
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~------- 79 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATE------- 79 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSS-------
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhh-------
Confidence 3445566667666655443 45788899999999999999999999999999999999999999887765321
Q ss_pred HHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 307 MVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCH 386 (701)
Q Consensus 307 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 386 (701)
....+.++.|.++|++|...|+.||..||++||.+|++.|++++|.++|++|...|+.||..+|+++|.+|++
T Consensus 80 -------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~ 152 (501)
T 4g26_A 80 -------SSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152 (501)
T ss_dssp -------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred -------hhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH
Confidence 2334678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695 387 NGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE 457 (701)
Q Consensus 387 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 457 (701)
.|++++|.++|++|.+.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus 153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998763
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=2.1e-28 Score=257.30 Aligned_cols=205 Identities=12% Similarity=0.146 Sum_probs=177.0
Q ss_pred HHHHHHHHHHcCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 037695 323 AKELVNQMSQMGCIPDV-VTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGK---------SLE 392 (701)
Q Consensus 323 a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~ 392 (701)
+..+...+.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..+|++||.+|++.+. ++.
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 44455566666655443 46888999999999999999999999999999999999999999987665 678
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 393 AREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLN 472 (701)
Q Consensus 393 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 472 (701)
|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037695 473 KGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN 527 (701)
Q Consensus 473 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 527 (701)
.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999988753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3e-24 Score=231.29 Aligned_cols=437 Identities=9% Similarity=-0.029 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHH
Q 037695 176 PEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKG 255 (701)
Q Consensus 176 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~ 255 (701)
...+......+.+.|++++|+..|+++.+.. |+..++..+..++.+.|++++|...++++.+.+ +.+..+|..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4566777778888888888888888887764 678888888888888888888888888887653 4456678888888
Q ss_pred HHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCC
Q 037695 256 YCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGC 335 (701)
Q Consensus 256 ~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 335 (701)
|.+.|++++|...|+.+...+ +++......++..+........+.+ .+..+...+.
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~l~~~~~~~~ 138 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKE-----------------------KFGDIDTATA 138 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTT-----------------------C---------
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHH
Confidence 888888888888888887664 2333333344433332211111111 1111111111
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHh-
Q 037695 336 IPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKP---------NTVSYTAFLNGLCH---NGKSLEAREMINTSEE- 402 (701)
Q Consensus 336 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~- 402 (701)
.|+...+..-...............+...+......+ +...+..+...+.. .|++++|...|+++..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 218 (514)
T 2gw1_A 139 TPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARL 218 (514)
T ss_dssp ------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHH
T ss_pred hhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHH
Confidence 2222222211111111111111111111111111110 12222222222222 4555555555555554
Q ss_pred ----CCC--------CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 403 ----EWW--------TPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQEC 470 (701)
Q Consensus 403 ----~~~--------~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 470 (701)
... +.+..++..+...+...|++++|...++.+.+.. |+...+..+...+...|++++|...++.+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 296 (514)
T 2gw1_A 219 FEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKA 296 (514)
T ss_dssp HHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred hhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 100 1123344444555555555555555555555443 12444555555555555555555555555
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 037695 471 LNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVV 550 (701)
Q Consensus 471 ~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 550 (701)
.... +.+...+..+...|...|++++|+..|+++.+.. +.+...+..+..+|...|++++|..+++++.+.. +.+..
T Consensus 297 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 373 (514)
T 2gw1_A 297 LKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPE 373 (514)
T ss_dssp HTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSH
T ss_pred hhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHH
Confidence 4431 2244445555555555555555555555555432 2233445555555555555555555555555432 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh-h------HHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR-T------AYNQVIENLCS---FGYLEEAGKILGKVLRTASKADASTC 620 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~ 620 (701)
++..+...+...|++++|...++++....|.. . ++..++.++.. .|++++|...++++++..+ .+..++
T Consensus 374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~ 452 (514)
T 2gw1_A 374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP-RSEQAK 452 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc-ccHHHH
Confidence 45555555555555555555555554443331 1 44555555555 5555555555555554432 244445
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 621 HVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 621 ~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
..++..|...|++++|...++++.+
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 5555555555555555555555555
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.1e-23 Score=224.73 Aligned_cols=459 Identities=11% Similarity=0.002 Sum_probs=333.5
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 037695 141 PIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHV 220 (701)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 220 (701)
...+......+.+.|++++|...|+++.+.. |++.+|..+..++.+.|++++|...|+.+.+.. +.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4567788889999999999999999999865 689999999999999999999999999998765 5677889999999
Q ss_pred HHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 037695 221 LVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEV 300 (701)
Q Consensus 221 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a 300 (701)
+.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+...+................
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999998875 4455555555555555444444444444443333233332222211111111111111
Q ss_pred HHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCC--
Q 037695 301 RDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCR---VGELDQAKKMLQQMYH-----HGC-- 370 (701)
Q Consensus 301 ~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~-----~~~-- 370 (701)
..+...+.. ....+... ...-+.+...+......+.. .|++++|..+|+.+.. ...
T Consensus 162 ~~~~~~~~~-~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 227 (514)
T 2gw1_A 162 TSMASFFGI-FKPELTFA-------------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNN 227 (514)
T ss_dssp HHHHHHHTT-SCCCCCCS-------------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTST
T ss_pred HHHHHHHhh-cCHHHHHH-------------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCc
Confidence 111000000 00000000 00001224445555555554 8999999999999987 311
Q ss_pred ------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 037695 371 ------KPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTP 444 (701)
Q Consensus 371 ------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 444 (701)
+.+..++..+...+...|++++|...++++.... |+...+..+...+...|++++|...++.+.+.. +.+.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 304 (514)
T 2gw1_A 228 EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNS 304 (514)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCT
T ss_pred cccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCH
Confidence 2235677888889999999999999999998865 447888889999999999999999999998874 5567
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037695 445 VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDAL 524 (701)
Q Consensus 445 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 524 (701)
..+..+...+...|++++|...++.+.... +.+...+..+...+...|++++|+..++++.+.. +.+..++..+..+|
T Consensus 305 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 382 (514)
T 2gw1_A 305 SVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEIL 382 (514)
T ss_dssp HHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHH
Confidence 788999999999999999999999998873 4467888999999999999999999999998753 34577889999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc
Q 037695 525 SKNGRVEEATELMMKMLSKGL-VPT----VVTYRTVIHRYCQ---VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF 595 (701)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 595 (701)
...|++++|...++++..... .++ ..++..+...+.. .|++++|...++++....|. ..++..++.+|...
T Consensus 383 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 462 (514)
T 2gw1_A 383 TDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Confidence 999999999999999887421 111 3488899999999 99999999999999998887 77889999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695 596 GYLEEAGKILGKVLRTASKADASTCHVL 623 (701)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~~~~~~~~~l 623 (701)
|++++|...++++++..+. +...+..+
T Consensus 463 g~~~~A~~~~~~a~~~~~~-~~~~~~~~ 489 (514)
T 2gw1_A 463 EDIDEAITLFEESADLART-MEEKLQAI 489 (514)
T ss_dssp TCHHHHHHHHHHHHHHCSS-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhccc-cHHHHHHH
Confidence 9999999999999987643 44444333
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=1.3e-22 Score=219.70 Aligned_cols=433 Identities=10% Similarity=0.014 Sum_probs=287.2
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHH
Q 037695 175 RPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIK 254 (701)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~ 254 (701)
....+..+...+.+.|++++|+..|+++.+.. +.++.++..+..++.+.|++++|+..|+++.... +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 45677888888889999999999999988765 5678888889999999999999999999988764 456778888888
Q ss_pred HHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcC
Q 037695 255 GYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMG 334 (701)
Q Consensus 255 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 334 (701)
++...|++++|...|+.+.. .|+.. ...+..+...+....|...++.+....+ . ....
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~----------------~-~~~~ 159 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDE----------------G-RGSQ 159 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC------------------------C
T ss_pred HHHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCc----------------c-cccc
Confidence 99999999999998863322 23321 1223333344444455555554433100 0 0011
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCC
Q 037695 335 CIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTV-SYTAFLNGLCHN--------GKSLEAREMINTSEEEWW 405 (701)
Q Consensus 335 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~--------g~~~~A~~~~~~~~~~~~ 405 (701)
..|+.. .+..+....+.+.+...+...... .+... ....+...+... |++++|..+++++.+..
T Consensus 160 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~- 232 (537)
T 3fp2_A 160 VLPSNT----SLASFFGIFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN- 232 (537)
T ss_dssp CCCCHH----HHHHHHHTSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred ccchHh----HHHHHHHhcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-
Confidence 223333 344455566666665544433321 22222 233333333222 36778888888877653
Q ss_pred CCC--------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695 406 TPN--------AITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV 477 (701)
Q Consensus 406 ~~~--------~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 477 (701)
|+ ..++..+...+...|++++|...++.+.+. .|+...+..+...+...|+++.|...++.+.+.. +.
T Consensus 233 -p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 308 (537)
T 3fp2_A 233 -TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PE 308 (537)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TT
T ss_pred -CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CC
Confidence 33 224555666777788888888888888776 3446777777777778888888888888877763 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695 478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH 557 (701)
Q Consensus 478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 557 (701)
+..++..+...+...|++++|+..|+++.... +.+...+..+..+|...|++++|..+++++.+.. +.+..++..+..
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 386 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAE 386 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 66777777888888888888888888877643 3345677777778888888888888888877753 445667777778
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHH
Q 037695 558 RYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSF----------GYLEEAGKILGKVLRTASKADASTC 620 (701)
Q Consensus 558 ~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~ 620 (701)
.+...|++++|.+.|+++....|. ...+..++.++... |++++|...++++++..+ .+...+
T Consensus 387 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~ 465 (537)
T 3fp2_A 387 ILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-RSEQAK 465 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-CCHHHH
Confidence 888888888888888877766433 12234455666666 888888888888877653 366777
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 621 HVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 621 ~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
..++..|...|++++|+..++++.+
T Consensus 466 ~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 466 IGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7788888888888888888888877
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=5.6e-22 Score=209.64 Aligned_cols=342 Identities=15% Similarity=0.096 Sum_probs=287.1
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 037695 336 IPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVV 415 (701)
Q Consensus 336 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 415 (701)
+.+...+..+...+.+.|++++|+.+|+.+.... +.+..++..+..++...|++++|...|+++.+.. +.+...+..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 4467789999999999999999999999998763 4578899999999999999999999999998865 4567889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 037695 416 MHGLRREGKLSEACDVVREMVKKGFFPTP---VEINLL------------IQSLCREGKMDGAKKFMQECLNKGCAVNVV 480 (701)
Q Consensus 416 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 480 (701)
..+|.+.|++++|...|+++.+.. +.+. ..+..+ ...+...|++++|..+|+.+.+. .+.+..
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~ 178 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-CVWDAE 178 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChH
Confidence 999999999999999999999874 3333 455544 44488999999999999999886 355888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----
Q 037695 481 NFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTV----- 555 (701)
Q Consensus 481 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l----- 555 (701)
.+..+..+|.+.|++++|+..|+++.+.. +.+..+|..++.+|...|++++|...|+++.... +.+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHH
Confidence 99999999999999999999999998753 4568899999999999999999999999999753 4455555555
Q ss_pred -------HHHHHhcCCHHHHHHHHHHHHhcCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695 556 -------IHRYCQVGRVEDLLKLLEKMLSKQKC-----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVL 623 (701)
Q Consensus 556 -------~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 623 (701)
+..|.+.|++++|..+|++++...|. ...+..++.++.+.|++++|+..++++++.. +.+..+|..+
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 78899999999999999999998887 2467888999999999999999999999875 3478999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHH------------HHhcC-----CHHHHHHHHHH-HHHcCCC
Q 037695 624 VESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSER------------LILEG-----KSEEADTLMLR-FVERGHI 684 (701)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~~~ 684 (701)
+.+|...|++++|+..++++++ +.|+ ...+..+..+ |...| +.+++.+.|++ +++..|.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred HHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999 5665 4666666633 33344 66788888886 6666664
Q ss_pred CC
Q 037695 685 QP 686 (701)
Q Consensus 685 ~~ 686 (701)
+.
T Consensus 414 ~~ 415 (450)
T 2y4t_A 414 NF 415 (450)
T ss_dssp GC
T ss_pred CC
Confidence 43
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.92 E-value=1.3e-21 Score=206.76 Aligned_cols=335 Identities=14% Similarity=0.093 Sum_probs=262.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHH
Q 037695 279 PDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQA 358 (701)
Q Consensus 279 pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a 358 (701)
.+...+..+...+.+.|++++|..+|+.+.. . .+.+..+|..+..+|...|++++|
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-----------------------~-~p~~~~~~~~l~~~~~~~g~~~~A 79 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVD-----------------------G-DPDNYIAYYRRATVFLAMGKSKAA 79 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----------------------h-CCccHHHHHHHHHHHHHCCCHHHH
Confidence 3456677777777777777777766666644 1 234677788888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh---hhHHHH------------HHHHHhcC
Q 037695 359 KKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNA---ITYSVV------------MHGLRREG 423 (701)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l------------l~~~~~~g 423 (701)
+..|+.+.+.+ +.+..++..+..+|.+.|++++|...|+++.... +.+. ..+..+ ...+...|
T Consensus 80 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 80 LPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888764 3357778888888888888888888888888753 2223 444444 44488899
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 424 KLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLD 503 (701)
Q Consensus 424 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 503 (701)
++++|+..|+.+.+.. +.+...+..+..+|...|++++|..+|+.+.+. .+.+..+|..+..+|...|++++|+..|+
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999998874 567888999999999999999999999999876 35578899999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHH
Q 037695 504 DMYLCKKDPDTVTYTTI------------IDALSKNGRVEEATELMMKMLSKGLVPT-----VVTYRTVIHRYCQVGRVE 566 (701)
Q Consensus 504 ~~~~~~~~p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~ 566 (701)
++.... +.+...+..+ +.+|...|++++|..+|+++.+. .|+ ..++..++.++.+.|+++
T Consensus 236 ~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 998742 2234444444 78899999999999999999985 344 447888899999999999
Q ss_pred HHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH------------HHhcC--
Q 037695 567 DLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES------------YLNKG-- 631 (701)
Q Consensus 567 ~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-- 631 (701)
+|+..+++++...|. ..++..++.+|...|++++|...++++++..+. +...+..+..+ |...|
T Consensus 313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~ 391 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLLKQSQKRDYYKILGVK 391 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHHHHHHSCCSGGGSCSS
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHhhcccchhHHHHhCCC
Confidence 999999999988886 789999999999999999999999999986543 67777777633 33444
Q ss_pred ---ChhhHHHHHHH-HHh
Q 037695 632 ---IPLLAYKVACR-MFN 645 (701)
Q Consensus 632 ---~~~~A~~~~~~-~~~ 645 (701)
+.+++.+.+++ ..+
T Consensus 392 ~~~~~~~~~~~y~~~~l~ 409 (450)
T 2y4t_A 392 RNAKKQEIIKAYRKLALQ 409 (450)
T ss_dssp TTCCTTHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 45667777776 555
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=4.7e-22 Score=215.38 Aligned_cols=436 Identities=11% Similarity=0.024 Sum_probs=317.3
Q ss_pred CHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 037695 140 DPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIH 219 (701)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 219 (701)
.+..|..+...+.+.|+++.|...|+.+.+.. +.++.++..+..+|.+.|++++|+..|+++.+.. +.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 35678888999999999999999999998865 4588889999999999999999999999988765 567888888999
Q ss_pred HHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCC--CCCCHHHHHHHHHHHHHcCCh
Q 037695 220 VLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKG--CSPDKVSYYTVMGYLCKEKRI 297 (701)
Q Consensus 220 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~pd~~~~~~ll~~~~~~g~~ 297 (701)
++...|++++|...|+.+ .. .|+. ....+..+...+....|...++.+.... ..+........+..+....+.
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 999999999999999633 22 2332 2233445566666788888888886541 111222233444555555554
Q ss_pred hHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhc--------CCHHHHHHHHHHHHHc
Q 037695 298 KEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVV-TYTAVVNGFCRV--------GELDQAKKMLQQMYHH 368 (701)
Q Consensus 298 ~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~--------g~~~~a~~~~~~~~~~ 368 (701)
..+...+.... ...+... ....+...+... |++++|..+++.+...
T Consensus 177 ~~~~~~~~~~~-------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~ 231 (537)
T 3fp2_A 177 HLEVSSVNTSS-------------------------NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA 231 (537)
T ss_dssp HHHHHTSCCCC-------------------------SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhcc-------------------------ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 44332222111 1122222 233333333222 4788888899888865
Q ss_pred CCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 369 GCKPN--------TVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGF 440 (701)
Q Consensus 369 ~~~~~--------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~ 440 (701)
. |+ ..++..+...+...|++++|...+..+.... |+...+..+...+...|++++|...++.+.+..
T Consensus 232 ~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 306 (537)
T 3fp2_A 232 N--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN- 306 (537)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-
T ss_pred C--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-
Confidence 3 33 2246666777888899999999999988863 667788888888899999999999999988875
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037695 441 FPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTI 520 (701)
Q Consensus 441 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 520 (701)
+.+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...|+++.+.. +.+...+..+
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 384 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFF 384 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 5567888889999999999999999999988863 4467788889999999999999999999988753 4456788888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCC-hhH
Q 037695 521 IDALSKNGRVEEATELMMKMLSKG-----LVPTVVTYRTVIHRYCQV----------GRVEDLLKLLEKMLSKQKC-RTA 584 (701)
Q Consensus 521 i~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~p~-~~~ 584 (701)
..+|...|++++|...|+++.+.. .......+..+...+.+. |++++|...|+++.+..|. ..+
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 464 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQA 464 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999887642 111223345556677777 9999999999999988887 778
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 585 YNQVIENLCSFGYLEEAGKILGKVLRTASK 614 (701)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 614 (701)
+..++.+|...|++++|...|+++++..+.
T Consensus 465 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 465 KIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 888999999999999999999999887643
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=1.1e-19 Score=185.53 Aligned_cols=326 Identities=17% Similarity=0.137 Sum_probs=223.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 037695 338 DVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMH 417 (701)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 417 (701)
++..+..+...+...|++++|+..|+.+.... +.+..++..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34556666777777777777777777777653 2356666777777777777777777777766643 334556666667
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695 418 GLRREGKLSEACDVVREMVKKGFF---PTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGD 494 (701)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 494 (701)
.+...|++++|...++.+.+.. + .+...+..+..... ...+..+...+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 7777777777777777766652 1 12222222211100 1112233566777888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 495 LEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEK 574 (701)
Q Consensus 495 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 574 (701)
+++|+..++++.+.. +.+...+..+..+|...|++++|...++++.... +.+..++..+...+...|++++|...+++
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 888888888877643 3456677777788888888888888888887763 55677777888888888888888888888
Q ss_pred HHhcCCC-hhHHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChhhHH
Q 037695 575 MLSKQKC-RTAYN------------QVIENLCSFGYLEEAGKILGKVLRTASKADAS----TCHVLVESYLNKGIPLLAY 637 (701)
Q Consensus 575 ~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~ 637 (701)
+.+..|. ...+. .++..+...|++++|...++++++..+. ++. .+..++..|...|++++|+
T Consensus 214 a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~ 292 (359)
T 3ieg_A 214 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI 292 (359)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence 8877776 33322 2366677888888888888888876543 332 3445777888888888888
Q ss_pred HHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhh
Q 037695 638 KVACRMFNRNLIP-DLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQR 694 (701)
Q Consensus 638 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 694 (701)
..++++.+. .| +..++..++.+|...|++++|...|+++++..|..+.....|..
T Consensus 293 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 293 RICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348 (359)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 888888883 44 45778888888888888888888888888888776666665554
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.88 E-value=7.8e-19 Score=179.09 Aligned_cols=315 Identities=14% Similarity=0.074 Sum_probs=232.2
Q ss_pred CCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037695 316 DQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEARE 395 (701)
Q Consensus 316 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 395 (701)
..|++++|...|..+.+.. +.+..++..+...+...|++++|...++.+.... +.+...+..+...+...|++++|..
T Consensus 15 ~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 15 AAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHHcCChHHHHH
Confidence 4589999999999999864 3467899999999999999999999999999864 3367889999999999999999999
Q ss_pred HHHHHHhCCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 396 MINTSEEEWWTP----NAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECL 471 (701)
Q Consensus 396 ~~~~~~~~~~~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 471 (701)
.+.++.+.. | +...+..+..... ...+..+...+...|++++|..+++.+.
T Consensus 93 ~~~~~~~~~--~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~ 147 (359)
T 3ieg_A 93 DFKKVLKSN--PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYTAAITFLDKIL 147 (359)
T ss_dssp HHHHHHTSC--CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999863 4 3333333321100 1123334455666777777777777766
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 037695 472 NKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVT 551 (701)
Q Consensus 472 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 551 (701)
+. .+.+...+..+..++...|++++|+..++++.... +.+..++..+...|...|++++|...|++..+.. +.+...
T Consensus 148 ~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 224 (359)
T 3ieg_A 148 EV-CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRC 224 (359)
T ss_dssp HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred Hh-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHH
Confidence 65 23456666677777777777777777777776643 3456667777777777777777777777776643 333333
Q ss_pred HH------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCh-----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 552 YR------------TVIHRYCQVGRVEDLLKLLEKMLSKQKCR-----TAYNQVIENLCSFGYLEEAGKILGKVLRTASK 614 (701)
Q Consensus 552 ~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 614 (701)
+. .++..+.+.|++++|...++++....|.. ..+..++.++...|++++|...++++++.. +
T Consensus 225 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~ 303 (359)
T 3ieg_A 225 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-P 303 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-c
Confidence 32 33667888999999999999999888773 235567888999999999999999998875 3
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHH
Q 037695 615 ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLI 663 (701)
Q Consensus 615 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 663 (701)
.++.++..++..|...|++++|+..++++.+ ..|+ ......+..+..
T Consensus 304 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 304 DNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQR 351 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHH
Confidence 4788899999999999999999999999998 5555 355555554443
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=7.1e-19 Score=177.18 Aligned_cols=290 Identities=13% Similarity=-0.006 Sum_probs=215.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695 371 KPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLL 450 (701)
Q Consensus 371 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~l 450 (701)
+.+...+..+...+...|++++|..+|+++.... +.+...+..++..+...|++++|..+++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 4456667777778888888888888888887654 4455566667777888888888888888887764 4456777778
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 037695 451 IQSLCREG-KMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGR 529 (701)
Q Consensus 451 i~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 529 (701)
...+...| ++++|...++.+.... +.+...|..+...+...|++++|+..|+++.+.. +.+...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 88888888 8888888888887763 4456777788888888888888888888887643 3345666667888888888
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------CC-hhHHHHHHHHHHhcCCHH
Q 037695 530 VEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ---------KC-RTAYNQVIENLCSFGYLE 599 (701)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------p~-~~~~~~l~~~~~~~g~~~ 599 (701)
+++|...++++.+.. +.+..++..+...+...|++++|...++++.... |. ..++..++.+|...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 888888888887764 5567778888888888888888888888877653 22 457778888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHH-HhcCCH
Q 037695 600 EAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERL-ILEGKS 668 (701)
Q Consensus 600 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~ 668 (701)
+|...++++++..+. +...+..++..|...|++++|+..++++.+ +.| +...+..++.++ ...|+.
T Consensus 254 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCch
Confidence 888888888876533 667777888888888888888888888877 445 346666677666 344553
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=2.1e-18 Score=173.67 Aligned_cols=286 Identities=10% Similarity=0.011 Sum_probs=169.7
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 037695 336 IPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVV 415 (701)
Q Consensus 336 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 415 (701)
+.+...+..+...+...|++++|..+|+.+.... +.+...+..++..+...|++++|..++.++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 3344555556666666666666666666666543 2234445555566666666666666666666542 3345556666
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695 416 MHGLRREG-KLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGD 494 (701)
Q Consensus 416 l~~~~~~g-~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 494 (701)
...+...| ++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 66666666 6666666666666553 3345556666666666666666666666666552 2244555556666666666
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcCCHH
Q 037695 495 LEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKG--------LVPTVVTYRTVIHRYCQVGRVE 566 (701)
Q Consensus 495 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~l~~~~~~~g~~~ 566 (701)
+++|...+++..+.. +.+...+..+...|...|++++|...++++.+.. .+....++..+..++...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 666666666666542 3345566666666666666666666666665421 1223455666666666666666
Q ss_pred HHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695 567 DLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESY 627 (701)
Q Consensus 567 ~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 627 (701)
+|...++++.+..|. ..++..++.++...|++++|...++++++..+ .+...+..++.++
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 314 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHH
Confidence 666666666666555 55666666666666666666666666665442 2555555555555
No 17
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=2.1e-16 Score=168.44 Aligned_cols=385 Identities=12% Similarity=0.031 Sum_probs=255.9
Q ss_pred ChHHHHHHHHHHHh----cCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCCC
Q 037695 245 NVLTYNCLIKGYCD----LHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCK----EKRIKEVRDLMEKMVNDSNLFHD 316 (701)
Q Consensus 245 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 316 (701)
+...+..+...|.. .+++++|...|+...+.| +...+..|...|.. .+++++|...|+..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a--------- 105 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKA--------- 105 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH---------
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH---------
Confidence 44445555555555 556666666666655543 34445555555544 33444333333333
Q ss_pred CCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cC
Q 037695 317 QGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCR----VGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCH----NG 388 (701)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g 388 (701)
.+.| +...+..|...|.. .+++++|...|+...+.| +...+..|...|.. .+
T Consensus 106 --------------~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 165 (490)
T 2xm6_A 106 --------------ALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTR 165 (490)
T ss_dssp --------------HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred --------------HHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 2222 44455555555655 566777777777766654 45556666666665 56
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCH
Q 037695 389 KSLEAREMINTSEEEWWTPNAITYSVVMHGLRR----EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCR----EGKM 460 (701)
Q Consensus 389 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~ 460 (701)
++++|...|++..+.+ +...+..+...|.. .++.++|...|++..+.| ++..+..+...|.. .+++
T Consensus 166 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 166 DYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 7777777777776653 55666666666666 677777777777777664 45566666666665 6778
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHH
Q 037695 461 DGAKKFMQECLNKGCAVNVVNFTSLIRGFCQ----KGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN-----GRVE 531 (701)
Q Consensus 461 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----g~~~ 531 (701)
++|..+|++..+.+ +...+..+...|.. .+++++|+..|++..+.| +...+..+...|... ++++
T Consensus 240 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~ 313 (490)
T 2xm6_A 240 TQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNRE 313 (490)
T ss_dssp HHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHH
Confidence 88888888877654 45566667777776 788888888888887654 455666777777776 8888
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCChhHHHHHHHHHHh----cCCHHHHHHH
Q 037695 532 EATELMMKMLSKGLVPTVVTYRTVIHRYCQVG---RVEDLLKLLEKMLSKQKCRTAYNQVIENLCS----FGYLEEAGKI 604 (701)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 604 (701)
+|...|++..+.| +...+..+...|...| ++++|+++|+++.+. .++.++..++..|.. .+++++|...
T Consensus 314 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 314 QAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 8888888888865 4567777777777766 788889988888876 457788888888887 7889999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCC-C-CHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 605 LGKVLRTASKADASTCHVLVESYLN----KGIPLLAYKVACRMFNRNLI-P-DLKLCKKVSERLILEGKSEEADTLMLRF 678 (701)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (701)
|+++.+.+ ++..+..|+..|.. .+++++|...|+++.+.+.. | +......++..+. .+.+.|.+...++
T Consensus 390 ~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~ 464 (490)
T 2xm6_A 390 MRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQY 464 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHH
T ss_pred HHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHH
Confidence 99888754 57788888888888 78899999999998885533 2 2234444443333 2345555555555
Q ss_pred HHcC
Q 037695 679 VERG 682 (701)
Q Consensus 679 ~~~~ 682 (701)
.++.
T Consensus 465 ~~~~ 468 (490)
T 2xm6_A 465 IEKY 468 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=2.7e-16 Score=167.56 Aligned_cols=365 Identities=11% Similarity=0.005 Sum_probs=302.3
Q ss_pred HHHHHHchhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHH
Q 037695 266 IKLIDEMPLKGCSPDKVSYYTVMGYLCK----EKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVT 341 (701)
Q Consensus 266 ~~~~~~m~~~g~~pd~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 341 (701)
.+.+....+.| +...+..+...|.. .+++ ++|...|....+.| +...
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~-----------------------~~A~~~~~~a~~~~---~~~a 77 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDL-----------------------TQAMDWFRRAAEQG---YTPA 77 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH-----------------------HHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCH-----------------------HHHHHHHHHHHHCC---CHHH
Confidence 44454444432 56666666666665 4444 44555555544443 5677
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHH
Q 037695 342 YTAVVNGFCR----VGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCH----NGKSLEAREMINTSEEEWWTPNAITYS 413 (701)
Q Consensus 342 ~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 413 (701)
+..|...|.. .+++++|..+|++..+.| +...+..|...|.. .+++++|...|++..+.+ +...+.
T Consensus 78 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 151 (490)
T 2xm6_A 78 EYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQ 151 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 8888888988 899999999999999875 66777888888888 789999999999998865 567777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695 414 VVMHGLRR----EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCR----EGKMDGAKKFMQECLNKGCAVNVVNFTSL 485 (701)
Q Consensus 414 ~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 485 (701)
.+...|.. .++.++|+..|++..+.| ++..+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 225 (490)
T 2xm6_A 152 SMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHL 225 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 88888887 789999999999999875 67888888888888 899999999999998875 66778888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695 486 IRGFCQ----KGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK----NGRVEEATELMMKMLSKGLVPTVVTYRTVIH 557 (701)
Q Consensus 486 l~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 557 (701)
...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|+..|++..+.| ++..+..+..
T Consensus 226 g~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~ 299 (490)
T 2xm6_A 226 ADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAH 299 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Confidence 888886 899999999999998754 56677778888887 899999999999998865 5677888888
Q ss_pred HHHhc-----CCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 558 RYCQV-----GRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFG---YLEEAGKILGKVLRTASKADASTCHVLVESYLN 629 (701)
Q Consensus 558 ~~~~~-----g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 629 (701)
.|... +++++|+..|+++.+.+ ...++..++..|...| ++++|+.+|+++.+.+ ++..+..|+..|..
T Consensus 300 ~y~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 375 (490)
T 2xm6_A 300 LYDKGAEGVAKNREQAISWYTKSAEQG-DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQ 375 (490)
T ss_dssp HHHHCBTTBCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHcCCCCCcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 88887 89999999999998864 4677888999888766 8999999999999863 78899999999999
Q ss_pred ----cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC
Q 037695 630 ----KGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLIL----EGKSEEADTLMLRFVERGHI 684 (701)
Q Consensus 630 ----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 684 (701)
.+++++|+..++++.+.+ +...+..++..|.+ .+++++|..+|+++.+.++.
T Consensus 376 g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 376 GKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 899999999999999954 56788889999998 89999999999999999854
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=1.1e-16 Score=172.35 Aligned_cols=427 Identities=11% Similarity=0.036 Sum_probs=269.7
Q ss_pred CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHH
Q 037695 208 APNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTV 287 (701)
Q Consensus 208 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~l 287 (701)
+-+...|..++.. .+.|+++.|..+|+++... .+.+...|..++..+.+.|++++|.++|+++... .|+...|...
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence 3455666666663 5566777777777776654 2445556666777777777777777777777655 3555555555
Q ss_pred HHHH-HHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHH-cCCCc-CHHHHHHHHHHHHh---------cCCH
Q 037695 288 MGYL-CKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQ-MGCIP-DVVTYTAVVNGFCR---------VGEL 355 (701)
Q Consensus 288 l~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~-~~~~p-~~~~~~~li~~~~~---------~g~~ 355 (701)
+... ...|+.+.|.+.+. .+|+.... .|..| +...|...+....+ .|++
T Consensus 86 ~~~~~~~~~~~~~a~~~~~-------------------~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 146 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMA-------------------QAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRI 146 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHH-------------------HHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHH
T ss_pred HHHHHHHccchhhHHHHHH-------------------HHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHH
Confidence 5322 23455554443211 12222211 23222 44566666655443 6788
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 356 DQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREM 435 (701)
Q Consensus 356 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m 435 (701)
+.|..+|++.+..........|..........|. ..+..++. .+.+++..|..+++.+
T Consensus 147 ~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~ 204 (530)
T 2ooe_A 147 TAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEY 204 (530)
T ss_dssp HHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHH
Confidence 8888888888873111111233222211100110 00111110 0123344455444442
Q ss_pred H------HcC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695 436 V------KKG---FFPT--------PVEINLLIQSLCRE----GKM----DGAKKFMQECLNKGCAVNVVNFTSLIRGFC 490 (701)
Q Consensus 436 ~------~~~---~~~~--------~~~~~~li~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 490 (701)
. +.. ++|+ ...|...+...... ++. ..+..+|++++.. .+.+...|..++..+.
T Consensus 205 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~ 283 (530)
T 2ooe_A 205 ETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLE 283 (530)
T ss_dssp HHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 1 111 2333 13444444332221 222 3677788888776 4557788888888777
Q ss_pred h-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H-HHHHH
Q 037695 491 Q-------KGDLE-------EALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPT-V-VTYRT 554 (701)
Q Consensus 491 ~-------~g~~~-------~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~ 554 (701)
+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++++. +|+ . ..|..
T Consensus 284 ~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 361 (530)
T 2ooe_A 284 QSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQ 361 (530)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHH
T ss_pred HhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHH
Confidence 5 68876 89999999875222345778888888899999999999999999885 443 3 57888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695 555 VIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIEN-LCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI 632 (701)
Q Consensus 555 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 632 (701)
++..+.+.|++++|.++|+++++..|. ...+...+.. +...|+.++|..+|+++++..+ .++..|..++..+.+.|+
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~ 440 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNE 440 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCC
Confidence 888888899999999999999987765 3334333333 3468999999999999988753 478889999999999999
Q ss_pred hhhHHHHHHHHHhCCC-CCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 633 PLLAYKVACRMFNRNL-IPD--LKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 633 ~~~A~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
.++|..+|++++..+. .|+ ..++..++......|+.+.+..++.++.+..|
T Consensus 441 ~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 441 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999999999998543 232 35777778888889999999999999988876
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=9.5e-17 Score=172.91 Aligned_cols=389 Identities=13% Similarity=0.107 Sum_probs=275.6
Q ss_pred CCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHH
Q 037695 243 TPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEE 322 (701)
Q Consensus 243 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~ 322 (701)
+-+...|..++. +.+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|++++.
T Consensus 10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~------------- 74 (530)
T 2ooe_A 10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM------------- 74 (530)
T ss_dssp TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-------------
T ss_pred CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------------
Confidence 446778888888 47889999999999999876 344677888999998888888888888877765
Q ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHh---------
Q 037695 323 AKELVNQMSQMGCIPDVVTYTAVVNGF-CRVGELDQAKK----MLQQMYHH-GCKP-NTVSYTAFLNGLCH--------- 386 (701)
Q Consensus 323 a~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~li~~~~~--------- 386 (701)
..|+...|..++... ...|+++.|.+ +|+..... |..| +...|...+.....
T Consensus 75 ------------~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~ 142 (530)
T 2ooe_A 75 ------------KVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAE 142 (530)
T ss_dssp ------------TCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTH
T ss_pred ------------cCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHH
Confidence 346777777766533 34567666554 66666543 4443 45677777766544
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695 387 NGKSLEAREMINTSEEEWWTPNA---ITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGA 463 (701)
Q Consensus 387 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 463 (701)
.|+++.|..+|++.... |.. ..|..........|. .+...++. ...+++..|
T Consensus 143 ~~~~~~a~~~y~~al~~---P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A 197 (530)
T 2ooe_A 143 NQRITAVRRVYQRGCVN---PMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNA 197 (530)
T ss_dssp HHHHHHHHHHHHHHTTS---CCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHH
Confidence 67888899999888872 322 222211111000110 01111111 123456667
Q ss_pred HHHHHHH------HHcC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHhCCCCCCHHHHH
Q 037695 464 KKFMQEC------LNKG---CAVN--------VVNFTSLIRGFCQK----GDL----EEALSLLDDMYLCKKDPDTVTYT 518 (701)
Q Consensus 464 ~~~~~~~------~~~~---~~~~--------~~~~~~ll~~~~~~----g~~----~~A~~~~~~~~~~~~~p~~~~~~ 518 (701)
..++... .+.. ++|+ ...|...+...... ++. ..|..+|++..... +.+...|.
T Consensus 198 ~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~ 276 (530)
T 2ooe_A 198 RRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWY 276 (530)
T ss_dssp HHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 6666652 2221 2443 35666666544332 232 47888999988742 44678888
Q ss_pred HHHHHHHh-------cCCHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-h-
Q 037695 519 TIIDALSK-------NGRVE-------EATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-R- 582 (701)
Q Consensus 519 ~li~~~~~-------~g~~~-------~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~- 582 (701)
.++..+.+ .|+++ +|..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++++..|. .
T Consensus 277 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 356 (530)
T 2ooe_A 277 EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT 356 (530)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH
T ss_pred HHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch
Confidence 88888775 79987 99999999987323556889999999999999999999999999999887 3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHH
Q 037695 583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES-YLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSE 660 (701)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 660 (701)
.+|..++..+.+.|++++|..+|+++++..+ .+...+...+.. +...|++++|..+|+++++. .| +...+..++.
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~ 433 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYID 433 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 4888999999999999999999999998643 344444444333 34689999999999999994 45 4688899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695 661 RLILEGKSEEADTLMLRFVERGHIQPK 687 (701)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~~~~~~ 687 (701)
.+.+.|+.++|..+|+++++.++.+|.
T Consensus 434 ~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 434 YLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 999999999999999999999876664
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=4.4e-15 Score=165.04 Aligned_cols=422 Identities=13% Similarity=0.137 Sum_probs=286.5
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHH
Q 037695 175 RPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAA--VAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCL 252 (701)
Q Consensus 175 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l 252 (701)
++.--...+.+|+..|.+.+|+++++++.-.+ ...+....+.++.+..+. +..+..++....... + ...+
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eI 1055 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDI 1055 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHH
Confidence 44444555566666666666666666665221 012334455555555444 334444444433311 1 2224
Q ss_pred HHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHH
Q 037695 253 IKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQ 332 (701)
Q Consensus 253 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~ 332 (701)
...+...|.+++|..+|++... .....+.++. .. +++++|.++..+.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i-----------------------~nldrAiE~Aerv-- 1102 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HI-----------------------GNLDRAYEFAERC-- 1102 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HH-----------------------hhHHHHHHHHHhc--
Confidence 4555556666666666655310 1111111211 22 3445555554433
Q ss_pred cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhH
Q 037695 333 MGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITY 412 (701)
Q Consensus 333 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 412 (701)
-+..+|..+..++...|++++|+..|.+. -|...|..++..+.+.|++++|.+.+....+.. ++....
T Consensus 1103 ----n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Id 1170 (1630)
T 1xi4_A 1103 ----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVE 1170 (1630)
T ss_pred ----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--cccccc
Confidence 24678889999999999999999999663 377888899999999999999999998877754 444444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695 413 SVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQK 492 (701)
Q Consensus 413 ~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 492 (701)
+.++.+|++.+++++.... ++ .++...+..+...|...|++++|..+|..+ ..|..+..+|++.
T Consensus 1171 t~LafaYAKl~rleele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkL 1234 (1630)
T 1xi4_A 1171 TELIFALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHL 1234 (1630)
T ss_pred HHHHHHHHhhcCHHHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHh
Confidence 4688999999988854433 22 456677778999999999999999999874 4789999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695 493 GDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLL 572 (701)
Q Consensus 493 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 572 (701)
|++++|.+.+++. .+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.++
T Consensus 1235 ge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~Ll 1303 (1630)
T 1xi4_A 1235 GEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITML 1303 (1630)
T ss_pred CCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999877 3568899999999999999999887654 3446777889999999999999999999
Q ss_pred HHHHhcCCC-hhHHHHHHHHHHh--cCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 573 EKMLSKQKC-RTAYNQVIENLCS--FGYLEEAGKILGKVLRTAS----KADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 573 ~~~~~~~p~-~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+..+..++. ...+..++..|++ -+++.++.+.|..-..... --+...|..++..|.+.|+++.|+...-.-..
T Consensus 1304 E~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~ 1383 (1630)
T 1xi4_A 1304 EAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT 1383 (1630)
T ss_pred HHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccH
Confidence 999888766 5677777777765 4667777777775443211 12567788999999999999998843211110
Q ss_pred C-----------CCCCCHhhHHHHHHHHHhcC---------------CHHHHHHHHH
Q 037695 646 R-----------NLIPDLKLCKKVSERLILEG---------------KSEEADTLML 676 (701)
Q Consensus 646 ~-----------~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 676 (701)
. ....+...|...+.-|.... +...++++|.
T Consensus 1384 ~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1384 DAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred hhhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 0 12235677777777777655 6666666664
No 22
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=5.1e-15 Score=164.58 Aligned_cols=411 Identities=12% Similarity=0.134 Sum_probs=204.6
Q ss_pred hcCCCHHHHHHHHhcCCChHHHHHHHHHHhhc-CCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCC--CCCHHHH
Q 037695 103 LRSLKPRQICAVLRSQADERVALQFFYWADRQ-WRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGI--ECRPEAF 179 (701)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~~~~Al~~f~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~ 179 (701)
..+-+++.|..||...+.. -..+.+|.... -.-..++.--...++.|...|.+.+|.++++.....+- .-+....
T Consensus 948 v~r~d~~lW~~vl~~~n~~--RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lq 1025 (1630)
T 1xi4_A 948 VRRKDPELWGSVLLESNPY--RRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQ 1025 (1630)
T ss_pred HHhcCHHHHHHHhcCCcHH--HHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHH
Confidence 4456666666666544322 22334453221 11133444555666666667777777777766663321 1233444
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhc
Q 037695 180 SYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDL 259 (701)
Q Consensus 180 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~ 259 (701)
+.++.+..+. +..+...+....... ....+...+...|.+++|..+|++.. -.....+.++. ..
T Consensus 1026 nlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i 1089 (1630)
T 1xi4_A 1026 NLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HI 1089 (1630)
T ss_pred HHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HH
Confidence 4455444444 333444433333211 12224445555555555555555531 11111122211 44
Q ss_pred CChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc------CCCCCCCCcHHHHHHHHHHHHHc
Q 037695 260 HRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVND------SNLFHDQGRIEEAKELVNQMSQM 333 (701)
Q Consensus 260 g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~g~~~~a~~~~~~~~~~ 333 (701)
+++++|.++.++.. +..+|..+..++...|++++|...|.+.... .......|++++|.+++...++.
T Consensus 1090 ~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~ 1163 (1630)
T 1xi4_A 1090 GNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK 1163 (1630)
T ss_pred hhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45555555555331 3444555555555555555555555332000 00001114444444444444433
Q ss_pred CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 037695 334 GCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYS 413 (701)
Q Consensus 334 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 413 (701)
. ++....+.++.+|++.++++....+. . .++...|..+...|...|++++|..+|... ..|.
T Consensus 1164 ~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~ 1225 (1630)
T 1xi4_A 1164 A--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 1225 (1630)
T ss_pred c--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHH
Confidence 2 22222334666666666666433221 1 234555556666666667777777766653 2566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695 414 VVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG 493 (701)
Q Consensus 414 ~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 493 (701)
.+..++.+.|++++|.+.+++. .+..+|..+..+|...|++..|......+ ..+...+..++..|.+.|
T Consensus 1226 rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G 1294 (1630)
T 1xi4_A 1226 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRG 1294 (1630)
T ss_pred HHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcC
Confidence 6666777777777776666654 24456666666666666666666554432 224555556666677777
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCH
Q 037695 494 DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN--GRVEEATELMMKMLSKGLVP------TVVTYRTVIHRYCQVGRV 565 (701)
Q Consensus 494 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~l~~~~~~~g~~ 565 (701)
.+++|+.+++...... +-....|+-+...|++. ++..++.++|..-. +++| +...|..++-.|.+.|++
T Consensus 1295 ~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~ 1371 (1630)
T 1xi4_A 1295 YFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEY 1371 (1630)
T ss_pred CHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccH
Confidence 7777777776665432 22333454455555442 23334444443222 2222 345566666667777777
Q ss_pred HHHH
Q 037695 566 EDLL 569 (701)
Q Consensus 566 ~~A~ 569 (701)
+.|.
T Consensus 1372 dnA~ 1375 (1630)
T 1xi4_A 1372 DNAI 1375 (1630)
T ss_pred HHHH
Confidence 7666
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.83 E-value=1.5e-18 Score=177.90 Aligned_cols=288 Identities=14% Similarity=0.029 Sum_probs=200.0
Q ss_pred CCHHHHHH-HHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 037695 388 GKSLEARE-MINTSEEEWW---TPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGA 463 (701)
Q Consensus 388 g~~~~A~~-~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a 463 (701)
|++++|.. .+.+...... ..+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence 45555555 4443332210 1123445556666666666666666666666653 44555666666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH---------------HHHHHHhcC
Q 037695 464 KKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTT---------------IIDALSKNG 528 (701)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---------------li~~~~~~g 528 (701)
...++++.+.. +.+..++..+..+|...|++++|+..|+++...... +...+.. .+..+...|
T Consensus 118 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 66666666652 335666666666677777777777777766653311 1111110 233334889
Q ss_pred CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 037695 529 RVEEATELMMKMLSKGLVP--TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKIL 605 (701)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 605 (701)
++++|..+|+++.... +. +..++..+...+.+.|++++|+..+++++...|. ..++..++.++...|++++|+..+
T Consensus 196 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 196 LFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998864 22 5888899999999999999999999999988887 778899999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC----------CHhhHHHHHHHHHhcCCHHHHHHHH
Q 037695 606 GKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP----------DLKLCKKVSERLILEGKSEEADTLM 675 (701)
Q Consensus 606 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~A~~~~ 675 (701)
+++++.. +.+...+..++.+|...|++++|+..++++++..... ...++..++.+|...|++++|..++
T Consensus 275 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 275 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 9998875 3478889999999999999999999999988832221 1578889999999999999999988
Q ss_pred HHHHH
Q 037695 676 LRFVE 680 (701)
Q Consensus 676 ~~~~~ 680 (701)
++.++
T Consensus 354 ~~~l~ 358 (368)
T 1fch_A 354 ARDLS 358 (368)
T ss_dssp TTCHH
T ss_pred HHHHH
Confidence 65443
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.81 E-value=1.8e-18 Score=177.16 Aligned_cols=264 Identities=13% Similarity=0.034 Sum_probs=212.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037695 408 NAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIR 487 (701)
Q Consensus 408 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 487 (701)
+...+..+...+.+.|++++|...|+++++.. +.+..++..+...+...|++++|...|+++.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44557778888888888888888888888774 5577888888888888999999999998888763 446788888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHH
Q 037695 488 GFCQKGDLEEALSLLDDMYLCKKDPD-----------TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVP--TVVTYRT 554 (701)
Q Consensus 488 ~~~~~g~~~~A~~~~~~~~~~~~~p~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~ 554 (701)
+|...|++++|+..|+++.+. .|+ ...+..+..+|...|++++|..+|+++.... +. +..++..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~ 218 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTG 218 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHH
Confidence 999999999999999888763 222 2334456788899999999999999999864 33 6889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 037695 555 VIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP 633 (701)
Q Consensus 555 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 633 (701)
+...|...|++++|+..|+++++..|. ..++..++.+|...|++++|+..++++++..+ .+..++..++.+|...|++
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCH
Confidence 999999999999999999999999887 78899999999999999999999999998763 3688999999999999999
Q ss_pred hhHHHHHHHHHhCCCC---C--------CHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 634 LLAYKVACRMFNRNLI---P--------DLKLCKKVSERLILEGKSEEADTLMLR 677 (701)
Q Consensus 634 ~~A~~~~~~~~~~~~~---p--------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (701)
++|+..++++++.... | +..++..++.++...|+.+.|....++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999883211 0 247888999999999999988877754
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=8.3e-18 Score=172.31 Aligned_cols=290 Identities=11% Similarity=0.021 Sum_probs=202.6
Q ss_pred cCCHHHHHH-HHHHHHHcCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 037695 352 VGELDQAKK-MLQQMYHHGC-KP--NTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSE 427 (701)
Q Consensus 352 ~g~~~~a~~-~~~~~~~~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 427 (701)
.|++++|.. .++....... .| +...+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 355555555 5554332210 01 23345556666666666666666666666543 3345556666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHhc
Q 037695 428 ACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTS---------------LIRGFCQK 492 (701)
Q Consensus 428 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------ll~~~~~~ 492 (701)
|...++++.+.. +.+..++..+...+...|++++|...++.+..... .+...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 666666666553 34556666666666666666666666666665421 12222211 23333488
Q ss_pred CCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695 493 GDLEEALSLLDDMYLCKKD-PDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKL 571 (701)
Q Consensus 493 g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 571 (701)
|++++|+..|+++.+.... ++..++..+..+|...|++++|...|+++.... +.+..++..++..+...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999875322 147889999999999999999999999998864 55688999999999999999999999
Q ss_pred HHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCChhhHHHHH
Q 037695 572 LEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA----------DASTCHVLVESYLNKGIPLLAYKVA 640 (701)
Q Consensus 572 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~A~~~~ 640 (701)
|++++...|. ..++..++.+|...|++++|...++++++..+.. ...+|..++.+|...|++++|..++
T Consensus 274 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 9999998887 7789999999999999999999999998865432 2688999999999999999999887
Q ss_pred HHHHh
Q 037695 641 CRMFN 645 (701)
Q Consensus 641 ~~~~~ 645 (701)
.+.++
T Consensus 354 ~~~l~ 358 (368)
T 1fch_A 354 ARDLS 358 (368)
T ss_dssp TTCHH
T ss_pred HHHHH
Confidence 65443
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=2.1e-16 Score=167.83 Aligned_cols=379 Identities=14% Similarity=0.049 Sum_probs=245.6
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCC-CcCHHHHHHHHHHHHhcCCHHHH
Q 037695 280 DKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGC-IPDVVTYTAVVNGFCRVGELDQA 358 (701)
Q Consensus 280 d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~a 358 (701)
....|+.|...+...|++++|.+.|++. ++++........ +....+|+.+..+|...|++++|
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kA----------------l~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A 113 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKA----------------EELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDV 113 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHH----------------HHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH----------------HHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHH
Confidence 3456777777777777777777766544 333333322212 22467899999999999999999
Q ss_pred HHHHHHHHHc-----C-CC-CCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH---HHhcCCHH
Q 037695 359 KKMLQQMYHH-----G-CK-PNTVSYTAFLNGLCH--NGKSLEAREMINTSEEEWWTPNAITYSVVMHG---LRREGKLS 426 (701)
Q Consensus 359 ~~~~~~~~~~-----~-~~-~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~ 426 (701)
...+++.... + .. ....++..+..++.. .+++++|...|++..+.. +.+...+..+..+ +...++.+
T Consensus 114 ~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~ 192 (472)
T 4g1t_A 114 QIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQ 192 (472)
T ss_dssp HHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHH
Confidence 9999887652 1 11 134556655555554 357999999999998754 2344445444444 44567888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695 427 EACDVVREMVKKGFFPTPVEINLLIQSLCR----EGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLL 502 (701)
Q Consensus 427 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 502 (701)
+|++.+++.++.. +.+..++..+...+.. .+++++|..++++.... .+.+...+..+...|...|++++|+..+
T Consensus 193 ~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~ 270 (472)
T 4g1t_A 193 NAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEPDKAIELL 270 (472)
T ss_dssp CTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 9999999888874 4566666666655544 46788999999998876 3557888899999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037695 503 DDMYLCKKDPDTVTYTTIIDALSKN-------------------GRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG 563 (701)
Q Consensus 503 ~~~~~~~~~p~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 563 (701)
++..+.. +.+..++..+..+|... +.++.|...+++..+.. +.+..++..+...|...|
T Consensus 271 ~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 271 KKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 9998743 33456666666665432 23567778888877753 445666788888999999
Q ss_pred CHHHHHHHHHHHHhcCCChh----HHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHH
Q 037695 564 RVEDLLKLLEKMLSKQKCRT----AYNQVIEN-LCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYK 638 (701)
Q Consensus 564 ~~~~A~~~~~~~~~~~p~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 638 (701)
++++|+..|+++++..|... .+..++.. +...|+.++|+..|.++++..+. ...... ....+..
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~--~~~~~~---------~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK--SREKEK---------MKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC--CHHHHH---------HHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc--cHHHHH---------HHHHHHH
Confidence 99999999999988877632 23334433 34678999999999999886533 222211 1233455
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHH
Q 037695 639 VACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEH 691 (701)
Q Consensus 639 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 691 (701)
++++.+..++. +..++..++.+|...|++++|++.|+++++.++..|+....
T Consensus 418 ~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 418 IAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHCC--CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 66666663332 45789999999999999999999999999999888876543
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=3.9e-17 Score=160.29 Aligned_cols=246 Identities=13% Similarity=0.101 Sum_probs=113.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037695 385 CHNGKSLEAREMINTSEEEWWTPNA--ITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDG 462 (701)
Q Consensus 385 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~ 462 (701)
...|++..|+..++..... .|+. .....+..+|...|+++.|+..++. .-+|+..++..+...+...++.++
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~ 83 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA 83 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred HHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence 3445555555555443322 1221 2333344555555555555544432 123344444455555555555555
Q ss_pred HHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 463 AKKFMQECLNKGC-AVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKML 541 (701)
Q Consensus 463 a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (701)
|...++++...+. +.+...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|...|+++.
T Consensus 84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5555555544432 22333344444555555555555555544 2344445555555555555555555555555
Q ss_pred hCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 037695 542 SKGLVPTVVTY---RTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADA 617 (701)
Q Consensus 542 ~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 617 (701)
+.. |+.... ..++..+...|++++|..+|+++.+..|. ..+++.++.++...|++++|...++++++..+. ++
T Consensus 158 ~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~-~~ 234 (291)
T 3mkr_A 158 DQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG-HP 234 (291)
T ss_dssp HHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred hhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH
Confidence 432 221100 11112222334555555555555554444 444455555555555555555555555544322 44
Q ss_pred HHHHHHHHHHHhcCChhh-HHHHHHHHHh
Q 037695 618 STCHVLVESYLNKGIPLL-AYKVACRMFN 645 (701)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~~ 645 (701)
.++..++..+...|+..+ +..+++++.+
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 445555555555555443 3344455544
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.79 E-value=2.1e-17 Score=166.04 Aligned_cols=267 Identities=12% Similarity=-0.005 Sum_probs=200.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695 410 ITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGF 489 (701)
Q Consensus 410 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 489 (701)
..+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CcCCHHHHHHHHHHH
Confidence 344555666666677777777776666653 345566666666677777777777777776665 234566666677777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 037695 490 CQKGDLEEALSLLDDMYLCKKDPDTVTYTTI--------------ID-ALSKNGRVEEATELMMKMLSKGLVPTVVTYRT 554 (701)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 554 (701)
...|++++|+..++++..... .+...+..+ .. .+...|++++|..+++++.+.. +.+..++..
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 177 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS 177 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 777777777777777765321 111222222 22 3677889999999999998864 557888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 037695 555 VIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP 633 (701)
Q Consensus 555 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 633 (701)
++..+...|++++|.+.++++....|. ..++..++..+...|++++|...++++++..+ .+..++..++..|...|++
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhccH
Confidence 999999999999999999999988887 77889999999999999999999999988763 4788899999999999999
Q ss_pred hhHHHHHHHHHhCCCCC-----------CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 634 LLAYKVACRMFNRNLIP-----------DLKLCKKVSERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 634 ~~A~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
++|+..++++.+....+ +...+..++.++.+.|++++|..+++++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 99999999998833221 2578888999999999999999998765543
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=1.1e-16 Score=157.16 Aligned_cols=268 Identities=10% Similarity=0.030 Sum_probs=177.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695 417 HGLRREGKLSEACDVVREMVKKGFFPTP--VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGD 494 (701)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 494 (701)
+-....|++..|+..++..... .|+. .....+.++|...|+++.|...++. ..+|+..++..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3445667777777776654332 2332 2445566777777777777765543 135566667777777777777
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 495 LEEALSLLDDMYLCKKDP-DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLE 573 (701)
Q Consensus 495 ~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 573 (701)
.++|++.++++...+..| +...+..+..+|...|++++|+..+++ +.+..++..++..+.+.|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777777777655444 344555666777777777777777765 4566777777777777777777777777
Q ss_pred HHHhcCCChhH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 037695 574 KMLSKQKCRTA---YNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP 650 (701)
Q Consensus 574 ~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 650 (701)
++.+..|+... ...++..+...|++++|..+|+++++.. +.++..++.++.++...|++++|...++++++.++.
T Consensus 155 ~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 155 KMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 77777766321 1223344445577777777777777764 446777777777777777777777777777773322
Q ss_pred CHhhHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCchHHHHhhhhhh
Q 037695 651 DLKLCKKVSERLILEGKSEE-ADTLMLRFVERGHIQPKSEEHLQRQRVF 698 (701)
Q Consensus 651 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 698 (701)
+..++..++..+...|+..+ +..+++++++..|..|.........+.|
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~~~~~~~f 281 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRAKENDF 281 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 44667777777777777765 4577777777777776666555544444
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=1.3e-15 Score=161.65 Aligned_cols=372 Identities=13% Similarity=0.015 Sum_probs=240.3
Q ss_pred ChHHHHHHHHHHHhcCChhHHHHHHHHchhC--------CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCC
Q 037695 245 NVLTYNCLIKGYCDLHRIKDAIKLIDEMPLK--------GCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHD 316 (701)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 316 (701)
....||.|...+...|++++|++.|++..+. .-+....+|+.+..+|...|++++|...+++...
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~------- 122 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKH------- 122 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------
Confidence 3556777777777777777777777765431 1122356778888888888888888777765543
Q ss_pred CCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCCHH
Q 037695 317 QGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRV--GELDQAKKMLQQMYHHGCKPNTVSYTAFLNG---LCHNGKSL 391 (701)
Q Consensus 317 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~ 391 (701)
+..............++..+..++.+. +++++|+..|++..... +-+...+..+..+ +...++.+
T Consensus 123 ---------i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~ 192 (472)
T 4g1t_A 123 ---------VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQ 192 (472)
T ss_dssp ---------HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCC
T ss_pred ---------HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHH
Confidence 211111111111344555555555544 46889999999888753 2234444444443 34567778
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695 392 EAREMINTSEEEWWTPNAITYSVVMHGLRR----EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFM 467 (701)
Q Consensus 392 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 467 (701)
+|+..+++..+.. +.+...+..+...+.. .+++++|...+++..... +.+..++..+...|...|++++|...+
T Consensus 193 ~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 270 (472)
T 4g1t_A 193 NAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELL 270 (472)
T ss_dssp CTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 8888888877653 3445555555555444 457788899998887764 567778888889999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037695 468 QECLNKGCAVNVVNFTSLIRGFCQK-------------------GDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNG 528 (701)
Q Consensus 468 ~~~~~~~~~~~~~~~~~ll~~~~~~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 528 (701)
+++.+.. |.+..++..+..+|... +.++.|...|+...+.. +.+..++..+...|...|
T Consensus 271 ~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 271 KKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 9988763 44666676666655432 33567888888877643 334567888999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 037695 529 RVEEATELMMKMLSKGLVPTVV--TYRTVIH-RYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKIL 605 (701)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 605 (701)
++++|...|++.++....|... .+..+.. .....|++++|+..|+++++..|....... ....+..++
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~ 419 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIA 419 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHH
Confidence 9999999999999864332221 2333332 235789999999999999999887433222 234456667
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 037695 606 GKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRN 647 (701)
Q Consensus 606 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 647 (701)
++.++.+ +.++.+|..++.+|...|++++|++.|+++++.+
T Consensus 420 ~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 420 KMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 7777765 4478899999999999999999999999999844
No 31
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=5.5e-17 Score=166.01 Aligned_cols=263 Identities=10% Similarity=-0.034 Sum_probs=170.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 377 YTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCR 456 (701)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~ 456 (701)
+..+...+.+.|++++|..+|+++.... +.+..+|..+...+...|++++|...|+++.+.. +.+..++..+...|..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 3444444444444444444444444332 2234444444444455555555555555444432 2334445555555555
Q ss_pred cCCHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh
Q 037695 457 EGKMDGAKKFMQECLNKGCA---------VNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKD-PDTVTYTTIIDALSK 526 (701)
Q Consensus 457 ~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~ 526 (701)
.|++++|...++++.+.... .....+..+...+...|++++|+..|+++.+.... ++..++..+...|..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 55555555555555443100 01233445677888889999999999998875321 157888889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 037695 527 NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKIL 605 (701)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 605 (701)
.|++++|...|+++.+.. +.+..+|..+..+|...|++++|+..|+++++..|. ..++..++.+|...|++++|...+
T Consensus 226 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 304 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF 304 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999988864 557888999999999999999999999999988887 778889999999999999999999
Q ss_pred HHHHHcCCCC-----------CHHHHHHHHHHHHhcCChhhHHHHHHH
Q 037695 606 GKVLRTASKA-----------DASTCHVLVESYLNKGIPLLAYKVACR 642 (701)
Q Consensus 606 ~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 642 (701)
+++++..+.. +..+|..+..++...|+.+.|..+..+
T Consensus 305 ~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 305 LTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9988764321 357788999999999999887776554
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=8.8e-17 Score=161.53 Aligned_cols=280 Identities=9% Similarity=0.006 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 037695 339 VVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHG 418 (701)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~ 418 (701)
...+..+...+...|++++|..+|+.+.... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 3445566666777777777777777776643 2355566666666666777777777666666542 3345555666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HH-HHHhcCCHH
Q 037695 419 LRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSL-IR-GFCQKGDLE 496 (701)
Q Consensus 419 ~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~-~~~~~g~~~ 496 (701)
+...|++++|...++++.+.. +.+...+..+... .|+......+ .. .+...|+++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHH
Confidence 666666666666666665542 1111111111000 0011111112 22 366778889
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 497 EALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKML 576 (701)
Q Consensus 497 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 576 (701)
+|...++++.+.. +.+...+..+...|...|++++|..+++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998887753 3467788888889999999999999999988764 5568888899999999999999999999998
Q ss_pred hcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 037695 577 SKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA-----------DASTCHVLVESYLNKGIPLLAYKVACRMF 644 (701)
Q Consensus 577 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 644 (701)
+..|. ..++..++.+|...|++++|...++++++..+.. +..++..++.+|...|++++|..++++.+
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 234 DINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88877 7788889999999999999999999998875442 57788899999999999999998877554
Q ss_pred h
Q 037695 645 N 645 (701)
Q Consensus 645 ~ 645 (701)
+
T Consensus 314 ~ 314 (327)
T 3cv0_A 314 E 314 (327)
T ss_dssp H
T ss_pred H
Confidence 4
No 33
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=4.2e-16 Score=155.82 Aligned_cols=239 Identities=13% Similarity=0.122 Sum_probs=55.7
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHH
Q 037695 188 RAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIK 267 (701)
Q Consensus 188 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~ 267 (701)
+.|++++|.+.++++ +++.+|..|..++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 344455555555554 2223555555555555555555555533 1344455555555555555555555
Q ss_pred HHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 037695 268 LIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVN 347 (701)
Q Consensus 268 ~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 347 (701)
.++..++. .+++.+.+.++.+|.+.|++.++.++++ .|+..+|..+..
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------------------------------~pn~~a~~~IGd 130 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------------------------------GPNNAHIQQVGD 130 (449)
T ss_dssp ----------------------------CHHHHTTTTT------------------------------CC----------
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------------------------------CCcHHHHHHHHH
Confidence 44444432 2334444445555555544444333221 133344555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 037695 348 GFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSE 427 (701)
Q Consensus 348 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 427 (701)
.|...|.+++|..+|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.
T Consensus 131 ~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~l 195 (449)
T 1b89_A 131 RCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRL 195 (449)
T ss_dssp ------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHH
Confidence 555555555555555433 23444555555555555555554444 134445555555555555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 428 ACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQ 491 (701)
Q Consensus 428 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 491 (701)
|...... +...+.....++..|.+.|.+++|..+++..+... +-....|+-+...|++
T Consensus 196 A~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 196 AQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 4322221 11222223334444444455555544444444332 3334444444444443
No 34
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.74 E-value=1.1e-16 Score=159.91 Aligned_cols=282 Identities=11% Similarity=0.075 Sum_probs=121.9
Q ss_pred HhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHH
Q 037695 152 SKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKAL 231 (701)
Q Consensus 152 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 231 (701)
-+.|+.++|.++++++ +++.+|..++.++.+.|++++|++.|.+ .+|...|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 4677889999998877 4556999999999999999999999965 367778999999999999999999
Q ss_pred HHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 037695 232 RFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDS 311 (701)
Q Consensus 232 ~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 311 (701)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|++++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 977776654 4567888899999999999999888774 367779999999999999988888888755
Q ss_pred CCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037695 312 NLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSL 391 (701)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 391 (701)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++
T Consensus 149 ----------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~ 194 (449)
T 1b89_A 149 ----------------------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 194 (449)
T ss_dssp ----------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred ----------------------------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHH
Confidence 25888999999999999999999987 27889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHH
Q 037695 392 EAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE--GKMDGAKKFMQE 469 (701)
Q Consensus 392 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~ 469 (701)
.|......+ ...+.-...++..|.+.|++++|+.+++..+... +-....|+-+.-.|++- +++.+..+.|..
T Consensus 195 lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 195 LAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp HHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 996554432 2333445568888999999999999999887665 55566777777666653 334444443331
Q ss_pred HHHcCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 037695 470 CLNKGCAV------NVVNFTSLIRGFCQKGDLEEALS 500 (701)
Q Consensus 470 ~~~~~~~~------~~~~~~~ll~~~~~~g~~~~A~~ 500 (701)
+.+++| +...|..+.-.|...++++.|..
T Consensus 269 --~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 269 --RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp --TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred --HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 112222 34456666666666666666655
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.72 E-value=1.5e-15 Score=146.57 Aligned_cols=225 Identities=13% Similarity=0.055 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC----HHHHH
Q 037695 445 VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK--DPD----TVTYT 518 (701)
Q Consensus 445 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~p~----~~~~~ 518 (701)
..+..+...+...|++++|..+|+.+.+.. .+...+..+..++...|++++|+..+++..+... .++ ..+|.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345566666667777777777777776665 5666677777777777777777777777664221 112 46677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCC
Q 037695 519 TIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGY 597 (701)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 597 (701)
.+..+|...|++++|...|+++... .|+. ..+...|++++|...++++....|. ...+..++..+...|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence 7777777788888888888777764 3443 3455567788888888888877766 5677778888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 598 LEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLR 677 (701)
Q Consensus 598 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 677 (701)
+++|...++++++..+. ++.++..++..|...|++++|+..++++++.+.. +...+..++.++.+.|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 88888888888876533 6777888888888888888888888888873322 357777788888888888888888888
Q ss_pred HHHcC
Q 037695 678 FVERG 682 (701)
Q Consensus 678 ~~~~~ 682 (701)
+++..
T Consensus 233 a~~~~ 237 (258)
T 3uq3_A 233 ARTKD 237 (258)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 88776
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=1.2e-15 Score=143.01 Aligned_cols=198 Identities=20% Similarity=0.150 Sum_probs=156.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037695 476 AVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTV 555 (701)
Q Consensus 476 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 555 (701)
|++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++.++.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4566777888888888888888888888887743 3456778888888888888888988888888764 4567788888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695 556 IHRYCQV-----------GRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVL 623 (701)
Q Consensus 556 ~~~~~~~-----------g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 623 (701)
..++... |++++|+..++++++..|+ ..++..++.+|...|++++|+..|+++++.. .++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 8888888 9999999999999999998 7889999999999999999999999999988 689999999
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 624 VESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLILEGKSEEADTLMLRFV 679 (701)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (701)
+.+|...|++++|+..++++++ ..| +...+..++.++...|++++|+..+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALE--QAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999 455 45788889999999999999999998764
No 37
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.70 E-value=5.1e-15 Score=144.31 Aligned_cols=248 Identities=9% Similarity=0.015 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 037695 445 VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPD--TVTYTTIID 522 (701)
Q Consensus 445 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~ 522 (701)
..+......+...|++++|..+++.+.+.. +.+...+..+..+|...|++++|+..+++.......|+ ...|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345556677778888888888888887763 33555778888888899999999999998887332222 345788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHH
Q 037695 523 ALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEA 601 (701)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 601 (701)
+|...|++++|...|++..+.. +.+..++..+...|...|++++|+..++++++..|. ...+..++..+...+++++|
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988864 456788899999999999999999999999988887 67777788444455699999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhCC-CCCC------HhhHHHHHHHHHhcCCHHHH
Q 037695 602 GKILGKVLRTASKADASTCHVLVESYLNKGI---PLLAYKVACRMFNRN-LIPD------LKLCKKVSERLILEGKSEEA 671 (701)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~A 671 (701)
...++++++..+. +...+..++..+...|+ +++|+..++++.+.. ..|+ ..++..++..|...|++++|
T Consensus 162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999987643 57888888889988888 888999999988732 1233 25788899999999999999
Q ss_pred HHHHHHHHHcCCCCCchHHHHhhh
Q 037695 672 DTLMLRFVERGHIQPKSEEHLQRQ 695 (701)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~l~~~ 695 (701)
..+++++++..|..+.....+...
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC--
T ss_pred HHHHHHHHhcCccHHHHHHHhhhh
Confidence 999999999999888777776654
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.2e-15 Score=142.29 Aligned_cols=223 Identities=11% Similarity=0.050 Sum_probs=169.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHH
Q 037695 410 ITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGC--AVN----VVNFT 483 (701)
Q Consensus 410 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~ 483 (701)
..+..+...+...|++++|+..|+++.+.. .+...+..+...+...|++++|...++.+.+... .++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666677777777777777776665 5566677777777777777777777777665421 111 46777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037695 484 SLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG 563 (701)
Q Consensus 484 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 563 (701)
.+...|...|++++|+..|+++... .|+. ..+...|++++|...++++.... +.+...+..+...+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence 7888888888888888888888763 4553 34566678888888888888753 345667888888888999
Q ss_pred CHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 037695 564 RVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACR 642 (701)
Q Consensus 564 ~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 642 (701)
++++|...+++++...|. ..++..++.++...|++++|...++++++..+ .++..+..++..|...|++++|+..+++
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999998888877 67888888999999999999999999888763 3678888889999999999999999998
Q ss_pred HHh
Q 037695 643 MFN 645 (701)
Q Consensus 643 ~~~ 645 (701)
+.+
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 887
No 39
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.67 E-value=9.2e-17 Score=172.99 Aligned_cols=116 Identities=19% Similarity=0.264 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037695 142 IVYYMMLEILSKTKLCQGAKRVLRLMAR---RGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAI 218 (701)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 218 (701)
.+|+++|++|++.|++++|..+|.+|.+ .|+.||..+||+||.+|++.|++++|.++|++|...|+.||..|||++|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 3455555555555555555555555432 3455555555555555555555555555555555555555555555555
Q ss_pred HHHHccCC-HhHHHHHHHHHHhCCCCCChHHHHHHHHHHH
Q 037695 219 HVLVVGNK-LAKALRFLERMQLAGITPNVLTYNCLIKGYC 257 (701)
Q Consensus 219 ~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~ 257 (701)
.++++.|+ .+.|.++|++|.+.|+.||..+|++++.++.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 55555554 2455555555555555555555555554443
No 40
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.66 E-value=1.3e-16 Score=171.76 Aligned_cols=117 Identities=9% Similarity=0.043 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695 409 AITYSVVMHGLRREGKLSEACDVVREMVK---KGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSL 485 (701)
Q Consensus 409 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 485 (701)
..||+++|++|++.|++++|..+|.+|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34566666666666666666666655442 355566666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037695 486 IRGFCQKGD-LEEALSLLDDMYLCKKDPDTVTYTTIIDALS 525 (701)
Q Consensus 486 l~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 525 (701)
|.++|+.|+ .++|.++|++|...|+.||..+|+.++.++.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e 247 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence 666665555 3455556666665556666666655554443
No 41
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.66 E-value=3.1e-14 Score=137.00 Aligned_cols=210 Identities=11% Similarity=-0.026 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037695 479 VVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHR 558 (701)
Q Consensus 479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 558 (701)
...+..+...+...|++++|+..|+++.+.. +.+...+..+..+|...|++++|..+++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 4456667777777888888888888777643 3456677777888888888888888888887753 4467778888888
Q ss_pred HHhcCCHHHHHHHHHHHHh--cCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 037695 559 YCQVGRVEDLLKLLEKMLS--KQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLL 635 (701)
Q Consensus 559 ~~~~g~~~~A~~~~~~~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 635 (701)
+...|++++|.++++++.. ..|. ...+..++.++...|++++|...++++++..+ .+...+..++..|...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888887 5555 56777888888888888888888888887653 367788888888888899999
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHH
Q 037695 636 AYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHL 692 (701)
Q Consensus 636 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 692 (701)
|+..++++.+.... +...+..++..+...|++++|..+++++.+..+..+.....+
T Consensus 194 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQ-NARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHTTSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHhCcC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 99888888873332 456777788888888999999999999988887666554443
No 42
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.66 E-value=3.4e-13 Score=131.37 Aligned_cols=225 Identities=12% Similarity=0.007 Sum_probs=176.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 037695 443 TPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQ----KGDLEEALSLLDDMYLCKKDPDTVTYT 518 (701)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~ 518 (701)
++.++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4556666777777777888888888777763 355667777777777 888888888888887754 667777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCChhHHHHHHH
Q 037695 519 TIIDALSK----NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ----VGRVEDLLKLLEKMLSKQKCRTAYNQVIE 590 (701)
Q Consensus 519 ~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~ 590 (701)
.+...|.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|++.|+++.+.+ ...++..++.
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~ 154 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN-DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-cHHHHHHHHH
Confidence 77888888 888888888888888764 67777888888888 888888888888888765 4567777888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037695 591 NLCS----FGYLEEAGKILGKVLRTASKADASTCHVLVESYLN----KGIPLLAYKVACRMFNRNLIPDLKLCKKVSERL 662 (701)
Q Consensus 591 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 662 (701)
.|.. .+++++|...++++.+.+ ++..+..++..|.. .+++++|+..++++.+.+ +...+..++.+|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 8877 888888888888888753 56777788888888 888888888888888843 256777788888
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCC
Q 037695 663 IL----EGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 663 ~~----~g~~~~A~~~~~~~~~~~~ 683 (701)
.. .+++++|.++|+++.+.++
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCC
Confidence 88 8888999999998888875
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.65 E-value=7.1e-14 Score=131.64 Aligned_cols=212 Identities=12% Similarity=-0.021 Sum_probs=152.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695 478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH 557 (701)
Q Consensus 478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 557 (701)
+...+..+...+...|++++|+..|+++.+.. +.+...+..+..+|...|++++|..+++++.... +.+..++..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45566667777777777777777777776642 3346677777777777778888887777777653 446677777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHh--cCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 037695 558 RYCQV-GRVEDLLKLLEKMLS--KQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP 633 (701)
Q Consensus 558 ~~~~~-g~~~~A~~~~~~~~~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 633 (701)
.+... |++++|...++++.+ ..|. ...+..++.++...|++++|...++++++..+ .+...+..++..|...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCH
Confidence 77788 888888888888777 3444 45677777888888888888888888877653 3577777788888888888
Q ss_pred hhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHH
Q 037695 634 LLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHL 692 (701)
Q Consensus 634 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 692 (701)
++|+..++++.+.....+...+..++..+...|+.++|..+++.+.+..|..+.....+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 88888888887733312456666667777788888888888888887776665554433
No 44
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=1.9e-14 Score=137.45 Aligned_cols=211 Identities=12% Similarity=0.050 Sum_probs=143.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695 478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH 557 (701)
Q Consensus 478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 557 (701)
....|..+...+...|++++|...|+++.+.. +.+...+..+..+|...|++++|...++++.+.. +.+..++..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 44556666677777788888888887777643 3456677777777788888888888888777653 446777777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 037695 558 RYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLA 636 (701)
Q Consensus 558 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 636 (701)
.+...|++++|.++++++.+..|. ...+..++..+...|++++|...++++++..+ .+...+..++..|...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHcCCHHHH
Confidence 888888888888888888777765 66777778888888888888888888877653 3677777888888888888888
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHH
Q 037695 637 YKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHL 692 (701)
Q Consensus 637 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 692 (701)
+..++++.+.... +..++..++.+|...|++++|..+++++++..+..+.....+
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 233 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK 233 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence 8888888774322 456777788888888888888888888888777655554443
No 45
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.64 E-value=2.1e-11 Score=131.90 Aligned_cols=452 Identities=11% Similarity=0.059 Sum_probs=256.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC---hhHHHHHHH
Q 037695 194 NAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHR---IKDAIKLID 270 (701)
Q Consensus 194 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~---~~~A~~~~~ 270 (701)
+.+..|+..+..+ +-|..+|..++..+.+.+.++.+..+|+.+... ++.....|..-+..-.+.|+ ++.+.++|+
T Consensus 50 d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 50 DVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 3344444444443 456667777777766666777777777776654 34455566666666666666 777777777
Q ss_pred HchhCC-CCCCHHHHHHHHHHHHHcCCh----hH----HHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCC-Cc-CH
Q 037695 271 EMPLKG-CSPDKVSYYTVMGYLCKEKRI----KE----VRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGC-IP-DV 339 (701)
Q Consensus 271 ~m~~~g-~~pd~~~~~~ll~~~~~~g~~----~~----a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~-~p-~~ 339 (701)
+..... .+|+...|...+....+.++. ++ +.++|+..+. ..|. .| +.
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~----------------------~vG~~d~~s~ 185 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVD----------------------KCAIFEPKSI 185 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHH----------------------HTTTTCSSCH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH----------------------HhCcccccch
Confidence 776552 136666666666554444432 11 2233333332 2233 33 23
Q ss_pred HHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 037695 340 VTYTAVVNGFC---------RVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAI 410 (701)
Q Consensus 340 ~~~~~li~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 410 (701)
..|...+.... ..++++.+..+|+.++......-..+|......--..+. ..+.+++.+..
T Consensus 186 ~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~~--------- 255 (679)
T 4e6h_A 186 QFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGELS--------- 255 (679)
T ss_dssp HHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHHH---------
T ss_pred HHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHhh---------
Confidence 45555554332 234567788888887752111112233221111000010 01111111100
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC----C-----------C-----C---HHHHHHHHHHHHhcC-------
Q 037695 411 TYSVVMHGLRREGKLSEACDVVREMVKK--GF----F-----------P-----T---PVEINLLIQSLCREG------- 458 (701)
Q Consensus 411 ~~~~ll~~~~~~g~~~~A~~~~~~m~~~--~~----~-----------~-----~---~~~~~~li~~~~~~g------- 458 (701)
..++.|...+.++... ++ + | . ...|...+..--..+
T Consensus 256 ------------~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~ 323 (679)
T 4e6h_A 256 ------------AQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDL 323 (679)
T ss_dssp ------------HHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchh
Confidence 0112222222221110 00 0 0 0 012222222211111
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695 459 KMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEAL-SLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELM 537 (701)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~-~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 537 (701)
....+..+|++++.. ++-....|...+..+...|+.++|. .+|++.... ++.+...|...+......|+++.|..+|
T Consensus 324 ~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iy 401 (679)
T 4e6h_A 324 HKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTI 401 (679)
T ss_dssp HHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 123455667777665 4557777777777777778877786 888887753 3445556666777777788888888888
Q ss_pred HHHHhCC---------CCCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCC-hhHHHHHHHHHHh
Q 037695 538 MKMLSKG---------LVPT------------VVTYRTVIHRYCQVGRVEDLLKLLEKMLSK-QKC-RTAYNQVIENLCS 594 (701)
Q Consensus 538 ~~m~~~~---------~~p~------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~-~~~~~~l~~~~~~ 594 (701)
+++++.. -.|+ ..+|...+....+.|..+.|..+|.++.+. .+. ...|...+..-.+
T Consensus 402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~ 481 (679)
T 4e6h_A 402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH 481 (679)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 8877531 0131 235777777777888888888888888876 322 4455444444444
Q ss_pred cC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHH
Q 037695 595 FG-YLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD--LKLCKKVSERLILEGKSEEA 671 (701)
Q Consensus 595 ~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A 671 (701)
.+ +.+.|..+|+.+++. .+.++..|...+......|+.+.|..+|++++.....+. ..++..++..-.+.|+.+.+
T Consensus 482 ~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~ 560 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSV 560 (679)
T ss_dssp TTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHH
T ss_pred hCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 44 488888888888886 344677777888877888888888888888888443222 26677777767778888888
Q ss_pred HHHHHHHHHcCCCCCchHHHHhh
Q 037695 672 DTLMLRFVERGHIQPKSEEHLQR 694 (701)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~l~~ 694 (701)
.++.+++.+..|..+.......+
T Consensus 561 ~~v~~R~~~~~P~~~~~~~f~~r 583 (679)
T 4e6h_A 561 RTLEKRFFEKFPEVNKLEEFTNK 583 (679)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcHHHHHHHH
Confidence 88888888888876655554443
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.63 E-value=4.5e-14 Score=143.13 Aligned_cols=233 Identities=11% Similarity=0.051 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037695 445 VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGD-LEEALSLLDDMYLCKKDPDTVTYTTIIDA 523 (701)
Q Consensus 445 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 523 (701)
..|..+...+...|++++|+..+++++... +-+...|+.+..++...|+ +++|+..|+++.... +-+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 456667777788888888888888888763 4467888888888989996 999999999988753 3467788889999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHh-cCCHHHH
Q 037695 524 LSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCS-FGYLEEA 601 (701)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~~A 601 (701)
+...|++++|+..|++++... +-+...|..+..++.+.|++++|+..++++++.+|. ..+|+.++.+|.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence 999999999999999999864 557888999999999999999999999999999888 7889999999988 6665777
Q ss_pred -----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcC-------
Q 037695 602 -----GKILGKVLRTASKADASTCHVLVESYLNKG--IPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEG------- 666 (701)
Q Consensus 602 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g------- 666 (701)
+..++++++..+. +...|..++..+...| ++++|++.+.++ + ..|+ ...+..++.+|.+.|
T Consensus 255 ~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 255 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhcccccch
Confidence 5889999887744 7888999999998888 688999998887 4 4444 578888899998874
Q ss_pred --CHHHHHHHHHHH-HHcCCC
Q 037695 667 --KSEEADTLMLRF-VERGHI 684 (701)
Q Consensus 667 --~~~~A~~~~~~~-~~~~~~ 684 (701)
.+++|+++|+++ .+..|.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHHHhCch
Confidence 358999999999 776653
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.63 E-value=8.1e-14 Score=135.74 Aligned_cols=243 Identities=14% Similarity=0.046 Sum_probs=152.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 037695 412 YSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV--NVVNFTSLIRGF 489 (701)
Q Consensus 412 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~ 489 (701)
+......+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+......+ ....|..+...+
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 3344555566666666666666666553 2233455556666666666666666666666532111 123366666777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695 490 CQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLL 569 (701)
Q Consensus 490 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 569 (701)
...|++++|+..|++..+.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+...+...+++++|.
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776642 2345667777777777777777777777776652 445666666663334445777788
Q ss_pred HHHHHHHhcCCC-hhHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCC-CCC------HHHHHHHHHHHHhcCChhhHHH
Q 037695 570 KLLEKMLSKQKC-RTAYNQVIENLCSFGY---LEEAGKILGKVLRTAS-KAD------ASTCHVLVESYLNKGIPLLAYK 638 (701)
Q Consensus 570 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~------~~~~~~l~~~~~~~g~~~~A~~ 638 (701)
+.|+++++..|. ...+..++.++...|+ +++|...++++++... .|+ ..++..++..|...|++++|+.
T Consensus 163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 163 SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 877777777776 5666667777777776 6667777777765421 122 2466677777888888888888
Q ss_pred HHHHHHhCCCCCCH-hhHHHHH
Q 037695 639 VACRMFNRNLIPDL-KLCKKVS 659 (701)
Q Consensus 639 ~~~~~~~~~~~p~~-~~~~~l~ 659 (701)
.++++++ +.|+. .....+.
T Consensus 243 ~~~~al~--~~p~~~~a~~~l~ 262 (272)
T 3u4t_A 243 AWKNILA--LDPTNKKAIDGLK 262 (272)
T ss_dssp HHHHHHH--HCTTCHHHHHHHC
T ss_pred HHHHHHh--cCccHHHHHHHhh
Confidence 8888887 44543 4444333
No 48
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.62 E-value=5.1e-14 Score=131.75 Aligned_cols=198 Identities=18% Similarity=0.090 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695 443 TPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIID 522 (701)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 522 (701)
++..+..+...+...|++++|...|+++++. -|.+...+..+..++.+.|++++|+..|++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKE-NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 3344444444444455555555555444443 12244444445555555555555555555544422 223344444555
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHH
Q 037695 523 ALSKN-----------GRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIEN 591 (701)
Q Consensus 523 ~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 591 (701)
+|... |++++|+..|++.++.. |-+...+..+..++...|++++|+..|+++++...++..+..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 55555 66666666666666542 3345566666666666666666666666666555225566666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 037695 592 LCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMF 644 (701)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 644 (701)
|...|++++|+..++++++..+. ++..+..++..+...|++++|+..+++..
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 66666666666666666665432 55666666666666666666666666554
No 49
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.62 E-value=2.7e-14 Score=139.35 Aligned_cols=247 Identities=11% Similarity=-0.093 Sum_probs=169.5
Q ss_pred hcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037695 421 REGKLSEACDVVREMVKKGF---FPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEE 497 (701)
Q Consensus 421 ~~g~~~~A~~~~~~m~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 497 (701)
..|++++|+..++++.+... +.+..++..+...+...|++++|...|+++.+.. +.+...|..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34567777777777776531 1134566677777777777888877777777652 3467777778888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695 498 ALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLS 577 (701)
Q Consensus 498 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 577 (701)
|+..|+++.+.. +.+...+..+..+|...|++++|...|+++.+.. |+.......+..+...|++++|...++++..
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888877643 3356777778888888888888888888887743 4333333444455667888888888887777
Q ss_pred cCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhh
Q 037695 578 KQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA---DASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKL 654 (701)
Q Consensus 578 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 654 (701)
..|.......++..+...++.++|...+.++++..+.. +...+..++..|...|++++|+..++++.. ..|+.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~-- 248 (275)
T 1xnf_A 173 KSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA--NNVHN-- 248 (275)
T ss_dssp HSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCCTT--
T ss_pred cCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCchh--
Confidence 76664333446667777788888888888876543211 146778888888999999999999998888 44533
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 037695 655 CKKVSERLILEGKSEEADTLM 675 (701)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~ 675 (701)
+.....++...|++++|++.+
T Consensus 249 ~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHhhHHHH
Confidence 223355777888888888776
No 50
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=7e-14 Score=146.49 Aligned_cols=221 Identities=14% Similarity=0.079 Sum_probs=116.5
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHH
Q 037695 446 EINLLIQSLCREG---KMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQK----GDLEEALSLLDDMYLCKKDPDTVTYT 518 (701)
Q Consensus 446 ~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~A~~~~~~~~~~~~~p~~~~~~ 518 (701)
.+..+...|...| +.++|...|+...+.| +++...+..+...|... +++++|+..|++.. . -+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 4455555555555 5555666665555554 22333334444444333 46666666666654 2 2333444
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCChhHHHHHHH
Q 037695 519 TIIDA-L--SKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG-----RVEDLLKLLEKMLSKQKCRTAYNQVIE 590 (701)
Q Consensus 519 ~li~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~p~~~~~~~l~~ 590 (701)
.|... | ...+++++|...|++..+.| ++..+..|...|. .| ++++|+++|+++. ...+.++..|+.
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~ 326 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQ 326 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 44444 2 34566666666666666655 4555555555555 33 6667777776666 333556666666
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 037695 591 NLCS----FGYLEEAGKILGKVLRTASKADASTCHVLVESYLN----KGIPLLAYKVACRMFNRNLIPDLKLCKKVSERL 662 (701)
Q Consensus 591 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 662 (701)
+|.. ..++++|..+|+++.+.+ ++.....|+.+|.. ..++.+|...++++.+.|.. +.......+...
T Consensus 327 ~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~ 402 (452)
T 3e4b_A 327 IYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP-EANDLATQLEAP 402 (452)
T ss_dssp HHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH-HHHHHHHHHHTT
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHh
Confidence 6554 236677777777766644 23344455555553 33666777777766665432 111111111112
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 037695 663 ILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 663 ~~~g~~~~A~~~~~~~~~~ 681 (701)
...++..+|..+.++..+.
T Consensus 403 ~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 403 LTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 2234555666666555443
No 51
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=1.5e-13 Score=139.28 Aligned_cols=247 Identities=11% Similarity=0.046 Sum_probs=199.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037695 409 AITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGK-MDGAKKFMQECLNKGCAVNVVNFTSLIR 487 (701)
Q Consensus 409 ~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 487 (701)
...|..+...+.+.|++++|+..++++++.. +-+...|..+...+...|+ +++|+..|++++... +-+...|+.+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 3456667777788888888888888888774 4567788888888888886 999999998888873 447788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHH
Q 037695 488 GFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ-VGRVE 566 (701)
Q Consensus 488 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~ 566 (701)
++...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++++.. +-+...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999998753 4467888999999999999999999999999865 5578889999999988 66657
Q ss_pred HH-----HHHHHHHHhcCCC-hhHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-------
Q 037695 567 DL-----LKLLEKMLSKQKC-RTAYNQVIENLCSFG--YLEEAGKILGKVLRTASKADASTCHVLVESYLNKG------- 631 (701)
Q Consensus 567 ~A-----~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 631 (701)
+| +..|++++...|. ..+|..++.+|...| ++++|+..+.++ +.. +.+...+..++..|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccch
Confidence 77 5889999999988 778999999999888 689999999887 433 457888899999998875
Q ss_pred --ChhhHHHHHHHH-HhCCCCCCH-hhHHHHHHHHH
Q 037695 632 --IPLLAYKVACRM-FNRNLIPDL-KLCKKVSERLI 663 (701)
Q Consensus 632 --~~~~A~~~~~~~-~~~~~~p~~-~~~~~l~~~~~ 663 (701)
.+++|+++++++ .+ +.|.. ..|..++..+.
T Consensus 331 ~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 331 EDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 258999999999 77 56654 56666655554
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.60 E-value=3.3e-12 Score=124.40 Aligned_cols=224 Identities=10% Similarity=-0.028 Sum_probs=169.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 037695 408 NAITYSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCR----EGKMDGAKKFMQECLNKGCAVNVVNFT 483 (701)
Q Consensus 408 ~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 483 (701)
+..++..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4445566666677777777777777777663 245566667777777 777888888887777764 666777
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037695 484 SLIRGFCQ----KGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK----NGRVEEATELMMKMLSKGLVPTVVTYRTV 555 (701)
Q Consensus 484 ~ll~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 555 (701)
.+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 77777777 888888888888877754 66777777788887 888888888888888765 56667777
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695 556 IHRYCQ----VGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCS----FGYLEEAGKILGKVLRTASKADASTCHVLVESY 627 (701)
Q Consensus 556 ~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 627 (701)
...|.. .+++++|+..|+++.+.+ ...++..++.+|.. .+++++|...++++++.+ ++..+..++..|
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK-DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 777777 888888888888887764 45677778888888 888888888888888764 366777888888
Q ss_pred Hh----cCChhhHHHHHHHHHhCC
Q 037695 628 LN----KGIPLLAYKVACRMFNRN 647 (701)
Q Consensus 628 ~~----~g~~~~A~~~~~~~~~~~ 647 (701)
.. .|++++|+..++++.+.+
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HcCCCcccCHHHHHHHHHHHHHcC
Confidence 88 888888888888888843
No 53
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=4.4e-13 Score=128.85 Aligned_cols=203 Identities=12% Similarity=0.015 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 037695 445 VEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDAL 524 (701)
Q Consensus 445 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~ 524 (701)
..+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...|+++.+.. +.+...+..+...|
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 445556666666677777777776666552 3356666677777777777777777777776543 33566677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHH
Q 037695 525 SKNGRVEEATELMMKMLSKGLVP-TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAG 602 (701)
Q Consensus 525 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 602 (701)
...|++++|..+++++...+..| +...+..++..+...|++++|...++++.+..|. ...+..++..+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777777632233 4556677777777888888888888887777766 667777778888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695 603 KILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL 652 (701)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 652 (701)
..++++++.. +.+...+..++..+...|++++|...++++.+ ..|+.
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~ 242 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR--LYPGS 242 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTS
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCC
Confidence 8888877654 34666777777788888888888888888877 44444
No 54
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=5.8e-13 Score=125.31 Aligned_cols=206 Identities=13% Similarity=0.031 Sum_probs=149.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695 443 TPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIID 522 (701)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 522 (701)
+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...++++.... +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 34456666666777777777777777766652 3456677777777777788888887777776643 335667777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHH
Q 037695 523 ALSKN-GRVEEATELMMKMLSKGLVP-TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLE 599 (701)
Q Consensus 523 ~~~~~-g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~ 599 (701)
.|... |++++|..+++++.+.+..| +...+..+...+...|++++|...++++.+..|. ...+..++.++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 88888 88888888888877732223 3566777778888888888888888888877776 667778888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695 600 EAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL 652 (701)
Q Consensus 600 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 652 (701)
+|...++++++..+..+...+..++..+...|+.+.|..+++.+.+ ..|+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~ 215 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYS 215 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCC
Confidence 8888888887765424677777777778888888888888888776 34444
No 55
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=1.9e-13 Score=143.24 Aligned_cols=334 Identities=12% Similarity=0.067 Sum_probs=225.0
Q ss_pred cHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CH
Q 037695 319 RIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGEL---DQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNG-----KS 390 (701)
Q Consensus 319 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~ 390 (701)
++++|..+|....+.| +...+..|...|...|+. ++|..+|+...+. +...+..|...+...+ ++
T Consensus 18 ~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~ 90 (452)
T 3e4b_A 18 DTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEH 90 (452)
T ss_dssp HHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHHH
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCH
Confidence 3344444444444444 333445555666667777 8999999988854 5556666666555554 78
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH----H
Q 037695 391 LEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLS---EACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDG----A 463 (701)
Q Consensus 391 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~---~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----a 463 (701)
++|...|++..+.+. ...+..+...|...+..+ .+...+......|. +.....+...|...+.++. +
T Consensus 91 ~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a 164 (452)
T 3e4b_A 91 HEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDV 164 (452)
T ss_dssp HHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHH
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHH
Confidence 899999999988652 336667777777665543 45555555555553 4456667777777775544 4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHH
Q 037695 464 KKFMQECLNKGCAVNVVNFTSLIRGFCQKG---DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN----GRVEEATEL 536 (701)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~~ 536 (701)
..+++.... .++..+..|...|...| +.++|+..|++..+.| .++...+..|...|... +++++|...
T Consensus 165 ~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 165 ERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 444444433 24448888999999999 9999999999999887 56666667777777655 799999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcC-----CHHHHHHHHHHH
Q 037695 537 MMKMLSKGLVPTVVTYRTVIHR-Y--CQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFG-----YLEEAGKILGKV 608 (701)
Q Consensus 537 ~~~m~~~~~~p~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~ 608 (701)
|++.. .| ++..+..+... + ...+++++|+++|++....+ .+.++..++.+|. .| ++++|...|+++
T Consensus 240 ~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 240 LEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 99988 43 56667777776 4 46899999999999998755 6788888988887 55 999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 037695 609 LRTASKADASTCHVLVESYLN----KGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLIL----EGKSEEADTLMLRFVE 680 (701)
Q Consensus 609 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 680 (701)
. .-++..+..|+..|.. ..++++|+..|+++.+.| +......++..|.. ..+..+|..+|+++.+
T Consensus 314 a----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 314 V----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp T----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred h----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 7 3477888889888877 348999999999999865 34566678888874 4689999999999999
Q ss_pred cCC
Q 037695 681 RGH 683 (701)
Q Consensus 681 ~~~ 683 (701)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 884
No 56
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.59 E-value=1.1e-13 Score=132.22 Aligned_cols=203 Identities=14% Similarity=0.131 Sum_probs=142.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695 443 TPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIID 522 (701)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 522 (701)
....+..+...+...|++++|..+|+++.+. .+.+...+..+...+...|++++|+..|+++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 3445566666677777777777777777664 34466777777777888888888888888777643 345677777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHH
Q 037695 523 ALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEA 601 (701)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 601 (701)
.|...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+..|. ...+..++..+...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888887754 456777888888888888888888888888887776 67778888888888888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 037695 602 GKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD 651 (701)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 651 (701)
...++++++..+ .+..++..++..|...|++++|+..++++.+ ..|+
T Consensus 179 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~ 225 (243)
T 2q7f_A 179 LSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAID--IQPD 225 (243)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTT
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcc
Confidence 888888887653 3677888888888888888888888888888 4444
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=1.7e-13 Score=133.63 Aligned_cols=228 Identities=10% Similarity=-0.088 Sum_probs=189.1
Q ss_pred hcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 037695 456 REGKMDGAKKFMQECLNKGC---AVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEE 532 (701)
Q Consensus 456 ~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 532 (701)
..|++++|...++.+.+... +.+...+..+...+...|++++|+..|+++.+.. +.+..+|..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45789999999999988632 2246778889999999999999999999998854 4468899999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 533 ATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTA 612 (701)
Q Consensus 533 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (701)
|...|+++.+.. +.+..++..+...|.+.|++++|...++++....|...........+...|++++|...+.+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999999999864 4568889999999999999999999999999999885555555556677799999999999988865
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--C-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695 613 SKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP--D-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK 687 (701)
Q Consensus 613 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 687 (701)
+ ++...+ .++..+...++.++|+..++++....... + ...+..++.+|...|++++|..+|+++++..|....
T Consensus 175 ~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 175 D-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp C-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred C-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 3 344444 47777888899999999999988733211 1 478888999999999999999999999998875443
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.58 E-value=7e-14 Score=145.38 Aligned_cols=265 Identities=14% Similarity=0.108 Sum_probs=165.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHH
Q 037695 418 GLRREGKLSEACDVVREMVKKGFFPTP----VEINLLIQSLCREGKMDGAKKFMQECLNK----G-CAVNVVNFTSLIRG 488 (701)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~ 488 (701)
.+...|++++|+..|+++++.. +.+. ..+..+...|...|++++|...++++... + .+.....+..+...
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 135 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNT 135 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHH
Confidence 3444444444444444444432 1121 23444444444455555555554444332 0 01123445555566
Q ss_pred HHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHhC---
Q 037695 489 FCQKGDLEEALSLLDDMYLC----KKD-PDTVTYTTIIDALSKNGR-----------------VEEATELMMKMLSK--- 543 (701)
Q Consensus 489 ~~~~g~~~~A~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~--- 543 (701)
|...|++++|...+++.... +-. ....++..+...|...|+ +++|...+++....
T Consensus 136 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 215 (411)
T 4a1s_A 136 LKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRD 215 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666655431 001 123356666667777777 77777776665442
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 544 -GLVP-TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK 614 (701)
Q Consensus 544 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 614 (701)
+-.+ ...++..+...|...|++++|...+++++...+. ..++..++.+|...|++++|...++++++....
T Consensus 216 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 295 (411)
T 4a1s_A 216 LGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 1111 2346777788888888999888888888766432 236778888888999999999999888765321
Q ss_pred -----CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 615 -----ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI-PD----LKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 615 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
....++..++..|...|++++|+..+++++..... ++ ..++..++.+|...|++++|..+++++.+...
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 296 LGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 11466778888999999999999999988772110 11 25778889999999999999999999988764
No 59
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.57 E-value=1.3e-10 Score=125.72 Aligned_cols=447 Identities=9% Similarity=0.007 Sum_probs=239.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---hhHHHHHHH
Q 037695 124 ALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGK---LRNAMYVLS 200 (701)
Q Consensus 124 Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~ 200 (701)
-+..|+...... |.|..+|..++..+.+.+.++.+..+|+.+... .|.....|...+..-.+.++ ++.+..+|+
T Consensus 51 ~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 51 VIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 343444444443 678999999999999999999999999999987 56788899999999888888 999999999
Q ss_pred HHHHCC-CCCCHHHHHHHHHHHHccCCH--------hHHHHHHHHHHh-CCC-CCC-hHHHHHHHHHHH---------hc
Q 037695 201 MMQKAA-VAPNLLICNTAIHVLVVGNKL--------AKALRFLERMQL-AGI-TPN-VLTYNCLIKGYC---------DL 259 (701)
Q Consensus 201 ~~~~~~-~~~~~~~~~~ll~~~~~~g~~--------~~A~~~~~~m~~-~g~-~~~-~~~~~~li~~~~---------~~ 259 (701)
+..... .+|++..|..-+....+.++. +...++|+.... .|. .++ ...|...+.... ..
T Consensus 128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq 207 (679)
T 4e6h_A 128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ 207 (679)
T ss_dssp HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence 998754 248888998888777665543 334477777554 465 454 467777765543 23
Q ss_pred CChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHc--CCC-
Q 037695 260 HRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQM--GCI- 336 (701)
Q Consensus 260 g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~--~~~- 336 (701)
++++.+.++|+.+.......-..+|......--..+ ...+.+++.... ..++.|...+.++... ++.
T Consensus 208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~~---------~~y~~Ar~~~~e~~~~~~~l~r 277 (679)
T 4e6h_A 208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGELS---------AQYMNARSLYQDWLNITKGLKR 277 (679)
T ss_dssp HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHHH---------HHHHHHHHHHHHHHHHTTTCCC
T ss_pred hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHhh---------HHHHHHHHHHHHHHHHHHhHhh
Confidence 457788999999885311111233332221111111 112333333221 1334444444433211 110
Q ss_pred --cC--------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695 337 --PD--------------------VVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAR 394 (701)
Q Consensus 337 --p~--------------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 394 (701)
|. ...|...+..--..+. ..... .....+.
T Consensus 278 ~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~----------------~l~~~------------~~~~Rv~ 329 (679)
T 4e6h_A 278 NLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKL----------------ELSDD------------LHKARMT 329 (679)
T ss_dssp CCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTT----------------CCCHH------------HHHHHHH
T ss_pred ccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCc----------------cccch------------hhHHHHH
Confidence 00 0122222221111110 00000 0011222
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 395 EMINTSEEEWWTPNAITYSVVMHGLRREGKLSEAC-DVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK 473 (701)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~-~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 473 (701)
.+|++.... ++-....|...+..+...|+.++|. .+|+..... ++.+...+...+....+.|+++.|..+|+.++..
T Consensus 330 ~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 330 YVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333333332 1223444444444444444444453 555554443 2333333444444444455555555555544432
Q ss_pred C----------CCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHH
Q 037695 474 G----------CAV-----------NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN-GRVE 531 (701)
Q Consensus 474 ~----------~~~-----------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~ 531 (701)
. .+. ...+|...+....+.|+.+.|..+|...++.-..+....|...+..-.+. ++++
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e 487 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTK 487 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHH
Confidence 0 010 12346666666666666777777777766541011223333222222233 3467
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 532 EATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGK 607 (701)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 607 (701)
.|..+|+..++. .+-+...+...+......|+.+.|..+|++++...|+ ...|..++..-.+.|+.+.+..+.++
T Consensus 488 ~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R 566 (679)
T 4e6h_A 488 TACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR 566 (679)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777776665 3445555556666666667777777777777666552 34566666666666777777777777
Q ss_pred HHHcCCC
Q 037695 608 VLRTASK 614 (701)
Q Consensus 608 ~~~~~~~ 614 (701)
+.+.-+.
T Consensus 567 ~~~~~P~ 573 (679)
T 4e6h_A 567 FFEKFPE 573 (679)
T ss_dssp HHHHSTT
T ss_pred HHHhCCC
Confidence 7665443
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=6e-13 Score=120.98 Aligned_cols=168 Identities=17% Similarity=0.112 Sum_probs=109.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q 037695 513 DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIEN 591 (701)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 591 (701)
+...|..+..+|...|++++|+..|++.++.. |-+..++..+..+|.+.|++++|...+..+....|. ...+..++..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 44556666666666666666666666666643 345666666666677777777777777766666665 5556666666
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 037695 592 LCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEA 671 (701)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 671 (701)
+...++++.|...+.++.+..+ .+...+..++..|...|++++|+..++++++.++. +..++..++.+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 6667777777777776666543 35666666777777777777777777777663222 346666677777777777777
Q ss_pred HHHHHHHHHcCC
Q 037695 672 DTLMLRFVERGH 683 (701)
Q Consensus 672 ~~~~~~~~~~~~ 683 (701)
++.|+++++..|
T Consensus 161 ~~~~~~al~~~p 172 (184)
T 3vtx_A 161 VKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHTTH
T ss_pred HHHHHHHHhCCc
Confidence 777777776554
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.56 E-value=1.4e-13 Score=142.70 Aligned_cols=303 Identities=15% Similarity=0.096 Sum_probs=190.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-
Q 037695 372 PNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPN----AITYSVVMHGLRREGKLSEACDVVREMVKK----GFFP- 442 (701)
Q Consensus 372 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~- 442 (701)
.....+......+...|++++|...|++..... +.+ ...+..+...+...|++++|...+++.... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 345566667777888888888888888887753 222 245667777888888888888888876543 2111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------HHH
Q 037695 443 TPVEINLLIQSLCREGKMDGAKKFMQECLNKGCA-VN----VVNFTSLIRGFCQKGD--------------------LEE 497 (701)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~--------------------~~~ 497 (701)
...++..+...+...|++++|...++++...... ++ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 2345666777777888888888888877664110 11 3356667777777777 777
Q ss_pred HHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHH
Q 037695 498 ALSLLDDMYLC----KKDP-DTVTYTTIIDALSKNGRVEEATELMMKMLSKG-LVPT----VVTYRTVIHRYCQVGRVED 567 (701)
Q Consensus 498 A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~----~~~~~~l~~~~~~~g~~~~ 567 (701)
|+..+.+.... +..| ...++..+...|...|++++|...+++..+.. -.++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 77777765431 1111 12356667777777778888877777766531 0112 2356667777777777777
Q ss_pred HHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhh
Q 037695 568 LLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK-AD----ASTCHVLVESYLNKGIPLL 635 (701)
Q Consensus 568 A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~ 635 (701)
|...++++....+. ..++..++..|...|++++|...++++++.... .+ ..++..++..|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 77777777654221 345666777777777777777777777654221 11 4456667777777777777
Q ss_pred HHHHHHHHHhC----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHH
Q 037695 636 AYKVACRMFNR----NLIPD-LKLCKKVSERLILEGKSEEADTLM 675 (701)
Q Consensus 636 A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 675 (701)
|+..++++.+. +..+. ..++..++..+...|+...+...+
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 370 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence 77777776652 11111 255556666666666655444333
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.55 E-value=1.5e-13 Score=138.11 Aligned_cols=268 Identities=16% Similarity=0.126 Sum_probs=177.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHH
Q 037695 415 VMHGLRREGKLSEACDVVREMVKKGFFPT----PVEINLLIQSLCREGKMDGAKKFMQECLNK----GCA-VNVVNFTSL 485 (701)
Q Consensus 415 ll~~~~~~g~~~~A~~~~~~m~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 485 (701)
....+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...++++... +.. .....+..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 3444555566666666666555542 122 234555555566666666666666554332 111 124455666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 037695 486 IRGFCQKGDLEEALSLLDDMYLCKK-DPD----TVTYTTIIDALSKNGR--------------------VEEATELMMKM 540 (701)
Q Consensus 486 l~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m 540 (701)
...|...|++++|...+++..+... .++ ..++..+...|...|+ +++|...+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 6777777777777777776553110 112 2356677777777777 77787777766
Q ss_pred HhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 541 LSK----GLV-PTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAGKILGKV 608 (701)
Q Consensus 541 ~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 608 (701)
... +.. ....++..+...+...|++++|...++++....+. ..++..++..+...|++++|...++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 542 111 12346777888888999999999999888765322 236778889999999999999999988
Q ss_pred HHcCCC-CC----HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 609 LRTASK-AD----ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI-PD----LKLCKKVSERLILEGKSEEADTLMLRF 678 (701)
Q Consensus 609 ~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (701)
++.... .+ ..++..++..|...|++++|+..++++.+.... ++ ..++..++.+|...|++++|..+++++
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 765321 12 456788889999999999999999988772111 11 357788999999999999999999999
Q ss_pred HHcCC
Q 037695 679 VERGH 683 (701)
Q Consensus 679 ~~~~~ 683 (701)
++...
T Consensus 330 ~~~~~ 334 (338)
T 3ro2_A 330 LEISR 334 (338)
T ss_dssp HHC--
T ss_pred HHHHH
Confidence 88764
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=1.6e-12 Score=118.06 Aligned_cols=170 Identities=13% Similarity=0.102 Sum_probs=139.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695 478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH 557 (701)
Q Consensus 478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 557 (701)
++.+|..+...|...|++++|+..|++..+.. +-+...+..+..+|...|++++|...+....... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56678888888888888888888888887743 3356778888888888888888888888887754 456777777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 037695 558 RYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLA 636 (701)
Q Consensus 558 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 636 (701)
.+...++++.|...+.++....|. ..++..++.+|...|++++|+..|+++++..+. ++.+|..++.+|...|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 888889999999999888888877 677888888888999999999999998887643 778888889999999999999
Q ss_pred HHHHHHHHhCCCCCCH
Q 037695 637 YKVACRMFNRNLIPDL 652 (701)
Q Consensus 637 ~~~~~~~~~~~~~p~~ 652 (701)
+..++++++ +.|+.
T Consensus 161 ~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHH--TTHHH
T ss_pred HHHHHHHHh--CCccC
Confidence 999999888 55554
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.53 E-value=9.3e-12 Score=123.43 Aligned_cols=222 Identities=10% Similarity=0.006 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037695 461 DGAKKFMQECLNKGCAVNVVNFTSLIRGFC-------QKGDL-------EEALSLLDDMYLCKKDPDTVTYTTIIDALSK 526 (701)
Q Consensus 461 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 526 (701)
++|..+|++++.. .+.+...|..++..+. ..|++ ++|..+|++....-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 4555556555554 2345555555555544 23554 6777777777652112234566677777777
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHH-hcCCHHHHH
Q 037695 527 NGRVEEATELMMKMLSKGLVPT-VV-TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLC-SFGYLEEAG 602 (701)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~-~~g~~~~A~ 602 (701)
.|++++|..+|+++++. .|+ .. +|..++..+.+.|++++|..+|+++++..|. ...|...+.... ..|++++|.
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777777763 332 33 6666777777777777777777777766555 334433333322 257777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 603 KILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRN-LIP--DLKLCKKVSERLILEGKSEEADTLMLRFV 679 (701)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (701)
.+|+++++..+. ++..|..++..+...|++++|+.+|++++... +.| ...++..++..+.+.|+.++|..+++++.
T Consensus 190 ~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777765433 66677777777777777777777777777742 233 24566666777777777777777777777
Q ss_pred HcCCCCC
Q 037695 680 ERGHIQP 686 (701)
Q Consensus 680 ~~~~~~~ 686 (701)
+..|..+
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7776543
No 65
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.51 E-value=4.2e-13 Score=139.04 Aligned_cols=300 Identities=16% Similarity=0.123 Sum_probs=225.4
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-
Q 037695 336 IPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPN----TVSYTAFLNGLCHNGKSLEAREMINTSEEE----WWT- 406 (701)
Q Consensus 336 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~- 406 (701)
.+....+......+...|++++|...|+.+..... .+ ...+..+...+...|++++|...+++.... +..
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 44566777788889999999999999999988642 23 356788888999999999999999886542 111
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------HH
Q 037695 407 PNAITYSVVMHGLRREGKLSEACDVVREMVKKGFF-PT----PVEINLLIQSLCREGK--------------------MD 461 (701)
Q Consensus 407 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~ 461 (701)
....++..+...+...|++++|...+++..+.... ++ ..++..+...+...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 12456777888899999999999999998876421 22 3367888888999999 99
Q ss_pred HHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHH
Q 037695 462 GAKKFMQECLNK----GC-AVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK-DPD----TVTYTTIIDALSKNGRVE 531 (701)
Q Consensus 462 ~a~~~~~~~~~~----~~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~ 531 (701)
.|...+...... +. +....++..+...|...|++++|...+++..+... .++ ..++..+..+|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999999887553 11 11245677888899999999999999998875211 122 236788889999999999
Q ss_pred HHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---C----hhHHHHHHHHHHhcCCHH
Q 037695 532 EATELMMKMLSKGL-VPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK---C----RTAYNQVIENLCSFGYLE 599 (701)
Q Consensus 532 ~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~----~~~~~~l~~~~~~~g~~~ 599 (701)
+|...+++...... .++ ..++..+...|...|++++|...++++....+ + ..++..++.+|...|+++
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 324 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 99999998875310 111 55778888999999999999999998877532 2 346778899999999999
Q ss_pred HHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhcCChhhH
Q 037695 600 EAGKILGKVLRTASK-----ADASTCHVLVESYLNKGIPLLA 636 (701)
Q Consensus 600 ~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A 636 (701)
+|...++++++.... ....++..++..+...|+...+
T Consensus 325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 366 (406)
T 3sf4_A 325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYST 366 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHH
Confidence 999999998765211 1234566677777777766543
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=1.2e-12 Score=134.64 Aligned_cols=230 Identities=12% Similarity=0.032 Sum_probs=169.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-----CHHHHH
Q 037695 450 LIQSLCREGKMDGAKKFMQECLNK----GCAV-NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK-DP-----DTVTYT 518 (701)
Q Consensus 450 li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p-----~~~~~~ 518 (701)
....+...|++++|...++++... +.++ ...++..+...|...|+++.|+..+.+..+... .+ ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566778888888888877653 1111 245677778888888888888888887764210 11 134678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cC-CC-hhHHH
Q 037695 519 TIIDALSKNGRVEEATELMMKMLSKGL-VPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLS-----KQ-KC-RTAYN 586 (701)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-p~-~~~~~ 586 (701)
.+..+|...|++++|...|++..+..- .++ ..++..+..+|...|++++|++.+++++. .. |. ..++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888889999999999999888775310 112 24678888999999999999999999987 34 54 56788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhCCCCCC-HhhHHHH
Q 037695 587 QVIENLCSFGYLEEAGKILGKVLRTAS----KADASTCHVLVESYLNKGI---PLLAYKVACRMFNRNLIPD-LKLCKKV 658 (701)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~~~l 658 (701)
.++.+|...|++++|...++++++... +.....+..+...|...|+ +.+|+.++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 899999999999999999999876521 1112335678888999998 77777777665 23333 3677889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 659 SERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 659 ~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
+..|...|++++|..+++++.+..
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999997754
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.50 E-value=1.6e-11 Score=121.77 Aligned_cols=217 Identities=13% Similarity=0.038 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 426 SEACDVVREMVKKGFFPTPVEINLLIQSLC-------REGKM-------DGAKKFMQECLNKGCAVNVVNFTSLIRGFCQ 491 (701)
Q Consensus 426 ~~A~~~~~~m~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 491 (701)
++|..+|++.+... +.++..|..++..+. ..|++ ++|..+|++.+..-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 57777888877753 556677777776665 35775 8999999999884234466788899999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 037695 492 KGDLEEALSLLDDMYLCKKDPD-TV-TYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYC-QVGRVEDL 568 (701)
Q Consensus 492 ~g~~~~A~~~~~~~~~~~~~p~-~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A 568 (701)
.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|++.++.. +++...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999873 454 33 78888899999999999999999998864 445555554444332 36999999
Q ss_pred HHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 037695 569 LKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTA-SKA--DASTCHVLVESYLNKGIPLLAYKVACRMF 644 (701)
Q Consensus 569 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 644 (701)
.++|+++++..|. ...+..++..+.+.|++++|..+|+++++.. .+| ....|..++..+...|+.+.|..+++++.
T Consensus 189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999988887 7888899999999999999999999999863 233 56788889999999999999999999998
Q ss_pred hC
Q 037695 645 NR 646 (701)
Q Consensus 645 ~~ 646 (701)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 83
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=8.8e-13 Score=139.03 Aligned_cols=193 Identities=11% Similarity=-0.005 Sum_probs=117.0
Q ss_pred CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037695 478 NVVNFTSLIRGFCQKGDL-EEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVI 556 (701)
Q Consensus 478 ~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 556 (701)
+...+..+...|...|++ ++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+. .|+...+..+.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 455555555555666666 66666666655432 223555666666666666666666666666653 34555566666
Q ss_pred HHHHhc---------CCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHHHHHHcCCC--CC
Q 037695 557 HRYCQV---------GRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF--------GYLEEAGKILGKVLRTASK--AD 616 (701)
Q Consensus 557 ~~~~~~---------g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~--~~ 616 (701)
..+... |++++|+..|+++++..|. ...+..++.+|... |++++|+..|+++++..+. .+
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 257 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN 257 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC
Confidence 666666 6666666666666666665 55666666666666 6666666666666665431 35
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHH
Q 037695 617 ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLM 675 (701)
Q Consensus 617 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 675 (701)
+..|..++.+|...|++++|+..++++++ +.|+ ...+..++.++...|++++|++.+
T Consensus 258 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 258 PDLHLNRATLHKYEESYGEALEGFSQAAA--LDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666666666666666666 3333 355666666666666666666544
No 69
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.49 E-value=7.3e-13 Score=137.64 Aligned_cols=273 Identities=14% Similarity=0.078 Sum_probs=159.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-----CCCChhh
Q 037695 341 TYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNT----VSYTAFLNGLCHNGKSLEAREMINTSEEEW-----WTPNAIT 411 (701)
Q Consensus 341 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~ 411 (701)
.+..+...+...|++++|+..|+.+..... .+. ..+..+...|...|++++|...+++..... .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 344455566666777777777776666421 122 345556666666666666666666554320 0112233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 037695 412 YSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKG-CAVNVVNFTSLIRGFC 490 (701)
Q Consensus 412 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~ 490 (701)
+..+...|...|++++|...+++..... ...+ .+....++..+...|.
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHH
Confidence 4444444455555555555554443320 0000 0112334455555555
Q ss_pred hcCC-----------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC
Q 037695 491 QKGD-----------------LEEALSLLDDMYLC----KKDP-DTVTYTTIIDALSKNGRVEEATELMMKMLSKGL-VP 547 (701)
Q Consensus 491 ~~g~-----------------~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p 547 (701)
..|+ +++|+..+++.... +..+ ...++..+...|...|++++|...+++...... .+
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 5666 66666655554321 1011 123566667777777777777777777665310 01
Q ss_pred C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--
Q 037695 548 T----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK-- 614 (701)
Q Consensus 548 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-- 614 (701)
+ ..++..+...|...|++++|...+++++...+. ..++..++.+|...|++++|...++++++....
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 1 236677777888888888888888877665332 346677788888888888888888887654211
Q ss_pred ---CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 615 ---ADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 615 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
....++..++..|...|++++|+..++++.+
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1134677788888888888888888888887
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.47 E-value=6.2e-12 Score=118.67 Aligned_cols=209 Identities=10% Similarity=0.026 Sum_probs=163.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 037695 477 VNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVI 556 (701)
Q Consensus 477 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 556 (701)
.++..+......+...|++++|+..|++..+....++...+..+..++...|++++|+..|++..+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46678888889999999999999999999886533777777778999999999999999999999864 44577888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-h-------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHH
Q 037695 557 HRYCQVGRVEDLLKLLEKMLSKQKC-R-------TAYNQVIENLCSFGYLEEAGKILGKVLRTASKA--DASTCHVLVES 626 (701)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~ 626 (701)
.++...|++++|+..++++++..|. . ..+..++..+...|++++|+..++++++.. +. +...+..++.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 9999999999999999999998887 4 457788888899999999999999998763 22 35677888888
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhhh
Q 037695 627 YLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQRQ 695 (701)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 695 (701)
|...|+ ..++++...+.. +...+... .....+.+++|+.+++++++..|..+.....+..-
T Consensus 163 ~~~~~~-----~~~~~a~~~~~~-~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 163 FYNNGA-----DVLRKATPLASS-NKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHH-----HHHHHHGGGTTT-CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHhcccC-CHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 876653 344555553222 23333332 34456778999999999999999888777776654
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=5.5e-13 Score=132.53 Aligned_cols=236 Identities=15% Similarity=0.103 Sum_probs=126.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC
Q 037695 446 EINLLIQSLCREGKMDGAKKFMQECLNK-------GCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLC------KKDP 512 (701)
Q Consensus 446 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~p 512 (701)
++..+...+...|++++|..+++++.+. ..+.....+..+...|...|++++|...+++.... +-.|
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444444445555554444444431 11223344455555555555555555555555432 1111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------
Q 037695 513 -DTVTYTTIIDALSKNGRVEEATELMMKMLSK------GL-VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK------ 578 (701)
Q Consensus 513 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------ 578 (701)
...++..+...|...|++++|..+++++.+. +- +....++..+...+...|++++|+++++++...
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 2344555666666666666666666665543 11 112345666667777777777777777776654
Q ss_pred --CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-------CCCC-------HHHHHHHHHHHHhcCChhhHHHHHH
Q 037695 579 --QKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTA-------SKAD-------ASTCHVLVESYLNKGIPLLAYKVAC 641 (701)
Q Consensus 579 --~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (701)
.|. ..++..++.+|...|++++|...++++++.. ..+. ...+..+...+...+.+.+|...++
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 222 3456667777777777777777777776531 1111 1122223334445566666777777
Q ss_pred HHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 642 RMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 642 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
.... ..|+ ..++..++.+|.+.|++++|..+++++++..+
T Consensus 269 ~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 269 ACKV--DSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred hcCC--CCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 6665 3333 47788899999999999999999999887643
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=2.4e-12 Score=135.75 Aligned_cols=212 Identities=8% Similarity=-0.024 Sum_probs=172.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 425 LSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKM-DGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLD 503 (701)
Q Consensus 425 ~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 503 (701)
+++++..++...... +.+...+..+...+...|++ ++|...|+++++.. +.+...|..+..+|...|++++|+..|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 456666666655442 44677788888888888888 88888888887763 4467788888888999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 037695 504 DMYLCKKDPDTVTYTTIIDALSKN---------GRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQV--------GRVE 566 (701)
Q Consensus 504 ~~~~~~~~p~~~~~~~li~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 566 (701)
+..+. .|+...+..+..+|... |++++|+..|++..+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88874 57778888888888888 89999999999988864 55688888888888888 8899
Q ss_pred HHHHHHHHHHhcCC---C-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 037695 567 DLLKLLEKMLSKQK---C-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACR 642 (701)
Q Consensus 567 ~A~~~~~~~~~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 642 (701)
+|+..|+++++..| . ..++..++.+|...|++++|...|+++++..+. +...+..+..++...|++++|+..+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999998888 4 788889999999999999999999999887644 677888888899999988888876543
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.46 E-value=9.1e-12 Score=127.92 Aligned_cols=293 Identities=8% Similarity=-0.024 Sum_probs=208.9
Q ss_pred HHhcCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHH--HHhcCCHHHHH-----------HHHHHHHhCCCCCChhh
Q 037695 349 FCRVGELDQAKKMLQQMYHH--GC--KPNTVSYTAFLNG--LCHNGKSLEAR-----------EMINTSEEEWWTPNAIT 411 (701)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~~ 411 (701)
+.+.+++++|..+++++... .+ .++...|-.++.. ....+.+..+. ..++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 45789999999999988763 22 2233333333332 11223333444 5666654421 11111
Q ss_pred H------HHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C---
Q 037695 412 Y------SVVMHGLRREGKLSEACDVVREMVKK----GFFP-TPVEINLLIQSLCREGKMDGAKKFMQECLNKG--C--- 475 (701)
Q Consensus 412 ~------~~ll~~~~~~g~~~~A~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--~--- 475 (701)
+ ......+...|++++|...+++..+. +-.+ ...++..+...|...|+++.|...+.+..+.- .
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 1 22556678899999999999998764 1111 23578888999999999999999999887641 1
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC
Q 037695 476 -AVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK-DPD----TVTYTTIIDALSKNGRVEEATELMMKMLSK----GL 545 (701)
Q Consensus 476 -~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~ 545 (701)
+....+++.+..+|...|++++|+..|++..+... .++ ..++..+..+|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 11245788888999999999999999998874211 122 247888999999999999999999998872 22
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CC-hhHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCC
Q 037695 546 -VPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ-----KC-RTAYNQVIENLCSFGY---LEEAGKILGKVLRTASKA 615 (701)
Q Consensus 546 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~ 615 (701)
+....++..+...|.+.|++++|...+++++... |. ...+..+...+...|+ +++|..++++.. ..+.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~ 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYAD 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHH
Confidence 3346778899999999999999999999988763 22 2335678888889999 788888887751 1122
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 616 DASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
....+..++..|...|++++|...++++.+
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345677899999999999999999999877
No 74
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.45 E-value=1.9e-12 Score=130.02 Aligned_cols=273 Identities=15% Similarity=0.103 Sum_probs=158.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 037695 341 TYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPN----TVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVM 416 (701)
Q Consensus 341 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 416 (701)
.+......+...|++++|..+|+++..... .+ ...+..+...+...|++++|...+.+.....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 73 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------ 73 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh------------
Confidence 344445556666777777777776666421 12 2445555666666666666666665543310
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHH
Q 037695 417 HGLRREGKLSEACDVVREMVKKGFF-PTPVEINLLIQSLCREGKMDGAKKFMQECLNKGC-AVN----VVNFTSLIRGFC 490 (701)
Q Consensus 417 ~~~~~~g~~~~A~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~ 490 (701)
...+.. ....++..+...+...|++++|...+++..+... .++ ..++..+...|.
T Consensus 74 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 74 -------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp -------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 000000 0122333444444444555555444444332200 001 224445555555
Q ss_pred hcCC--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 037695 491 QKGD--------------------LEEALSLLDDMYLC----KKDP-DTVTYTTIIDALSKNGRVEEATELMMKMLSKGL 545 (701)
Q Consensus 491 ~~g~--------------------~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~ 545 (701)
..|+ +++|...+++.... +..+ ...++..+...|...|++++|...+++..+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5565 66666665554321 1011 123566667777777888888777777664310
Q ss_pred -CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 546 -VPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS 613 (701)
Q Consensus 546 -~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 613 (701)
.++ ..++..+...+...|++++|...++++....+. ..++..++..+...|++++|...++++++...
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 011 236677777888888888888888877655221 34667778888888888888888888765421
Q ss_pred C-CC----HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 614 K-AD----ASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 614 ~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
. .+ ..++..++..|...|++++|...++++.+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 1 11 34677788888999999999999988887
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.42 E-value=1.6e-11 Score=111.37 Aligned_cols=169 Identities=17% Similarity=0.032 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHH
Q 037695 515 VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLC 593 (701)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~ 593 (701)
..|..+...+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+..|. ...+..++..+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345556666777777777777777766543 445667777777777778888888888777777665 566777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 037695 594 SFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADT 673 (701)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 673 (701)
..|++++|...++++++.. +.+...+..++..+...|++++|+..++++.+.... +...+..++.++...|++++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888877764 336777777888888888888888888888774322 45677778888888888888888
Q ss_pred HHHHHHHcCCCCC
Q 037695 674 LMLRFVERGHIQP 686 (701)
Q Consensus 674 ~~~~~~~~~~~~~ 686 (701)
+++++.+..+..+
T Consensus 166 ~~~~~~~~~~~~~ 178 (186)
T 3as5_A 166 HFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCch
Confidence 8888877765444
No 76
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=6.9e-12 Score=137.41 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHH
Q 037695 515 VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLC 593 (701)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~ 593 (701)
..|+.|..+|.+.|++++|+..|++.++.. +-+..+|..+..+|.+.|++++|+..|+++++.+|+ ..++..++.+|.
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~ 88 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345555555555555555555555555432 223445555555555555555555555555555554 445555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHH
Q 037695 594 SFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEAD 672 (701)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 672 (701)
..|++++|++.|+++++..+. +...|..++.+|...|++++|+..|+++++ +.|+ ...+..++.+|...|++++|.
T Consensus 89 ~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 89 EMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccHHHHH
Confidence 555555555555555554422 445555555555555555555555555555 3333 245555555555555555555
Q ss_pred HHHHHHHH
Q 037695 673 TLMLRFVE 680 (701)
Q Consensus 673 ~~~~~~~~ 680 (701)
+.++++++
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=6.8e-11 Score=121.09 Aligned_cols=229 Identities=9% Similarity=0.005 Sum_probs=169.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC-----CHHHHH
Q 037695 450 LIQSLCREGKMDGAKKFMQECLNKGC-AV----NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK-DP-----DTVTYT 518 (701)
Q Consensus 450 li~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p-----~~~~~~ 518 (701)
....+...|++++|...++++...-. .+ ...++..+...|...|+++.|+..+.+..+... .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445678888888888888765311 11 245677788888888999999888887764210 11 245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCC-hhHHHH
Q 037695 519 TIIDALSKNGRVEEATELMMKMLSK----GLVP-TVVTYRTVIHRYCQVGRVEDLLKLLEKMLS-----KQKC-RTAYNQ 587 (701)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~p~-~~~~~~ 587 (701)
.+..+|...|++++|...|++..+. +-++ ...++..+..+|...|++++|++.+++++. ..|. ..++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 8888999999999999999887763 1111 134677888999999999999999999988 5665 567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCC---C-CHHHHHHHHHHHHhcCC---hhhHHHHHHHHHhCCCCCCH-hhHHHHH
Q 037695 588 VIENLCSFGYLEEAGKILGKVLRTASK---A-DASTCHVLVESYLNKGI---PLLAYKVACRMFNRNLIPDL-KLCKKVS 659 (701)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~-~~~~~l~ 659 (701)
++.++.+.|++++|...++++++.... + ....+..+...|...|+ +.+|+..+++ .+..|+. ..+..++
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la 343 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAA 343 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHH
Confidence 999999999999999999999876432 1 23445666677778888 7777777765 2233333 6777899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc
Q 037695 660 ERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
..|...|++++|..+|+++++.
T Consensus 344 ~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 344 AVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 78
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.36 E-value=3.3e-12 Score=126.85 Aligned_cols=233 Identities=13% Similarity=0.131 Sum_probs=120.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-CCC
Q 037695 412 YSVVMHGLRREGKLSEACDVVREMVKK-------GFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK------G-CAV 477 (701)
Q Consensus 412 ~~~ll~~~~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~-~~~ 477 (701)
+..+...+...|++++|..+++++.+. ..+.....+..+...+...|++++|..+++++... + .+.
T Consensus 30 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 109 (311)
T 3nf1_A 30 LHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPA 109 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChH
Confidence 444444444445555555444444431 11222334455555555555555555555555432 1 122
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------C
Q 037695 478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLC------KKDP-DTVTYTTIIDALSKNGRVEEATELMMKMLSK------G 544 (701)
Q Consensus 478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~ 544 (701)
....+..+...|...|++++|...|+++.+. +..| ....+..+...|...|++++|..+++++... +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3445555666666666666666666665542 1112 2344566666777777777777777766653 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------C-hh------HHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 545 LVP-TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK---------C-RT------AYNQVIENLCSFGYLEEAGKILGK 607 (701)
Q Consensus 545 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---------~-~~------~~~~l~~~~~~~g~~~~A~~~~~~ 607 (701)
..| ...++..+...|...|++++|.++++++.+..+ . .. .+..+...+...+.+.+|...+..
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 269 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence 112 234566667777777777777777777765311 1 11 122223333444555566666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 608 VLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 608 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+.... +....++..++.+|...|++++|+.+++++++
T Consensus 270 ~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 270 CKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ----C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 65432 33456677788888888888888888888776
No 79
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.35 E-value=4.4e-11 Score=131.04 Aligned_cols=167 Identities=11% Similarity=0.053 Sum_probs=142.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037695 476 AVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTV 555 (701)
Q Consensus 476 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 555 (701)
|-+...|+.|...|.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|+..|++.++.. +-+..+|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3456778888888999999999999999888742 2346788888999999999999999999988864 4458889999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 037695 556 IHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPL 634 (701)
Q Consensus 556 ~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 634 (701)
..+|.+.|++++|++.|+++++.+|+ ..++..++.+|...|++++|+..|+++++..+. +...+..++.+|...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 99999999999999999999998888 788999999999999999999999999988644 7888889999999999999
Q ss_pred hHHHHHHHHHh
Q 037695 635 LAYKVACRMFN 645 (701)
Q Consensus 635 ~A~~~~~~~~~ 645 (701)
+|.+.++++++
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888766
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=6.6e-11 Score=107.18 Aligned_cols=164 Identities=19% Similarity=0.140 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 037695 479 VVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHR 558 (701)
Q Consensus 479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 558 (701)
...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3455666777788888888888888876543 3456777888888888888888888888887753 4567778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 037695 559 YCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAY 637 (701)
Q Consensus 559 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 637 (701)
+...|++++|.+.++++....|. ...+..++..+...|++++|...++++++.. +.+...+..++..+...|++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888888887776 6677888888888889999998888888775 346778888888888999999999
Q ss_pred HHHHHHHh
Q 037695 638 KVACRMFN 645 (701)
Q Consensus 638 ~~~~~~~~ 645 (701)
..++++.+
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888877
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.35 E-value=1.1e-10 Score=110.02 Aligned_cols=206 Identities=11% Similarity=-0.027 Sum_probs=163.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 037695 441 FPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTI 520 (701)
Q Consensus 441 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 520 (701)
+.++..+......+...|++++|...|+.+.+...+++...+..+..++...|++++|+..|++..+.. +.+...|..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346788888999999999999999999999988544778888889999999999999999999999853 2346788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---hhHHHHHHH
Q 037695 521 IDALSKNGRVEEATELMMKMLSKGLVPTV-------VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC---RTAYNQVIE 590 (701)
Q Consensus 521 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~ 590 (701)
..+|...|++++|...|++..+.. +.+. ..|..+...+...|++++|++.|+++++..|. ..++..++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 999999999999999999999864 4455 55888888999999999999999999999887 467778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHH
Q 037695 591 NLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKV 658 (701)
Q Consensus 591 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l 658 (701)
+|...| ..+++++.... ..+...+.... ....+.+++|+..++++++ +.|+. .+...+
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l 220 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQ 220 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHH
Confidence 886544 45566666654 33455554443 3456778999999999999 55654 443333
No 82
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=1.3e-09 Score=111.25 Aligned_cols=198 Identities=11% Similarity=0.028 Sum_probs=102.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHH
Q 037695 448 NLLIQSLCREGKMDGAKKFMQECLNK----GCA--V-NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKD----PDTVT 516 (701)
Q Consensus 448 ~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~----p~~~~ 516 (701)
..+...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 33444445555555555555544332 111 1 1233444555555666666666666655432111 01234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhcCCC-----hhHH
Q 037695 517 YTTIIDALSKNGRVEEATELMMKMLSKGLVP-T-VVTYR----TVIHRYCQVGRVEDLLKLLEKMLSKQKC-----RTAY 585 (701)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~ 585 (701)
+..+...+...|++++|...+++.....-.+ . ..... ..+..+...|++++|...+++.....|. ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 5555666666666666666666655421011 1 11111 1223355667777777776666554332 1134
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCH-HHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 586 NQVIENLCSFGYLEEAGKILGKVLRTAS----KADA-STCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 586 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
..++..+...|++++|...+++++.... .++. ..+..+..++...|++++|...++++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5566666677777777777766654321 1112 2455566677777777777777777665
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.32 E-value=8.1e-10 Score=112.82 Aligned_cols=267 Identities=12% Similarity=0.044 Sum_probs=189.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHH
Q 037695 416 MHGLRREGKLSEACDVVREMVKKGFFPTPV----EINLLIQSLCREGKMDGAKKFMQECLNKGC-AVN----VVNFTSLI 486 (701)
Q Consensus 416 l~~~~~~g~~~~A~~~~~~m~~~~~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll 486 (701)
...+...|++++|...+++........+.. .+..+...+...|+++.|...+++...... ..+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 344556777777777777766653222222 455566677778888888888887665311 111 23356677
Q ss_pred HHHHhcCCHHHHHHHHHHHHhC----CCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCHHHHHHH
Q 037695 487 RGFCQKGDLEEALSLLDDMYLC----KKD--PD-TVTYTTIIDALSKNGRVEEATELMMKMLSKGLV----PTVVTYRTV 555 (701)
Q Consensus 487 ~~~~~~g~~~~A~~~~~~~~~~----~~~--p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----p~~~~~~~l 555 (701)
..+...|++++|...+++.... +.. |. ...+..+...+...|++++|...+++.....-. ....++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 8899999999999999987642 222 22 345677888999999999999999998764211 124567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcC--CC-hhHHH-----HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 037695 556 IHRYCQVGRVEDLLKLLEKMLSKQ--KC-RTAYN-----QVIENLCSFGYLEEAGKILGKVLRTASKAD---ASTCHVLV 624 (701)
Q Consensus 556 ~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~ 624 (701)
...+...|++++|...++++.... +. ...+. ..+..+...|++++|...++++......+. ...+..++
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 889999999999999999987652 21 11222 234457789999999999999876543221 33567788
Q ss_pred HHHHhcCChhhHHHHHHHHHhC----CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 625 ESYLNKGIPLLAYKVACRMFNR----NLIPDL-KLCKKVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
..+...|++++|...++++... +..++. ..+..++.++...|+.++|...++++.+..
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988762 111122 467778889999999999999999887653
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.30 E-value=5.7e-10 Score=114.14 Aligned_cols=306 Identities=10% Similarity=0.033 Sum_probs=211.3
Q ss_pred CcCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHc--CCC--CCHHHHHHHHHH--HHhcCCHHHHH---------HHHH
Q 037695 336 IPDVVTYTAVVNGF--CRVGELDQAKKMLQQMYHH--GCK--PNTVSYTAFLNG--LCHNGKSLEAR---------EMIN 398 (701)
Q Consensus 336 ~p~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~--~~~--~~~~~~~~li~~--~~~~g~~~~A~---------~~~~ 398 (701)
.|+..+-+.+-.-| .+.+++++|..+++++... .+. .+...|-.++.. ..-.+.+..+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34444445554454 7889999999999987653 122 233334444332 11112222222 5555
Q ss_pred HHHhCCCCCCh-h---hHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 399 TSEEEWWTPNA-I---TYSVVMHGLRREGKLSEACDVVREMVKKG-FFPT----PVEINLLIQSLCREGKMDGAKKFMQE 469 (701)
Q Consensus 399 ~~~~~~~~~~~-~---~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~ 469 (701)
.+.....+.+. . .+......+...|++++|+..|++..+.. -.++ ..++..+...|...|+++.|...+.+
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 55432111111 1 12234455678999999999999987642 1122 34678888999999999999999998
Q ss_pred HHHcC--C---C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 470 CLNKG--C---A-VNVVNFTSLIRGFCQKGDLEEALSLLDDMYLC----KKDP-DTVTYTTIIDALSKNGRVEEATELMM 538 (701)
Q Consensus 470 ~~~~~--~---~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~ 538 (701)
..+.. . . ....+++.+..+|...|++++|+..|++..+. +..+ ...++..+..+|...|++++|...++
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 87631 1 1 12456788899999999999999999987652 1111 13467888999999999999999999
Q ss_pred HHHh-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CC-hhHHHHHHHHHHhcCC---HHHHHHH
Q 037695 539 KMLS-----KGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ-----KC-RTAYNQVIENLCSFGY---LEEAGKI 604 (701)
Q Consensus 539 ~m~~-----~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~-~~~~~~l~~~~~~~g~---~~~A~~~ 604 (701)
+... .. +....++..+...+.+.|++++|...++++.... +. ...+..+...+...|+ +.+|+..
T Consensus 247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 9887 43 3347788899999999999999999999998763 22 3455666777778888 8888888
Q ss_pred HHHHHHcCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 605 LGKVLRTASK-ADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 605 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+++. +.. .....+..++..|...|++++|...++++.+
T Consensus 326 ~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 326 FEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8763 222 2234567889999999999999999998876
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.26 E-value=3.5e-10 Score=109.07 Aligned_cols=194 Identities=9% Similarity=-0.039 Sum_probs=113.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-C-CCHHHH
Q 037695 478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPD---TVTYTTIIDALSKNGRVEEATELMMKMLSKGL-V-PTVVTY 552 (701)
Q Consensus 478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~-p~~~~~ 552 (701)
+...+..+...+.+.|++++|+..|+++.+.. +.+ ...+..+..+|...|++++|+..|++.++... . .....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 44455555566666666666666666665532 112 34555566666666666666666666665420 1 113445
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695 553 RTVIHRYCQ--------VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVL 623 (701)
Q Consensus 553 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 623 (701)
..+..++.. .|++++|+..|++++...|+ ......+.......+. + ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~-------~-----------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK-------L-----------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-------H-----------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-------H-----------HHHHHHH
Confidence 555555555 66666666666666666554 2222111110000000 0 0113566
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCchHH
Q 037695 624 VESYLNKGIPLLAYKVACRMFNRNLIP--DLKLCKKVSERLILE----------GKSEEADTLMLRFVERGHIQPKSEE 690 (701)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~ 690 (701)
+..|...|++++|+..++++++..+.. ....+..++.+|... |++++|+..|+++++..|.++....
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 233 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT 233 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence 778888888888888888888843321 135677777788765 8888999999999888887765444
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.26 E-value=6e-11 Score=115.73 Aligned_cols=227 Identities=15% Similarity=0.093 Sum_probs=162.2
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHH
Q 037695 455 CREGKMDGAKKFMQECLNK-------GCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLC------KKDP-DTVTYTTI 520 (701)
Q Consensus 455 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~l 520 (701)
...|+++.|..++++.++. ..+....++..+...|...|++++|+..++++... +-.| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777776552 22335677888999999999999999999998753 2122 34578889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCC-hhH
Q 037695 521 IDALSKNGRVEEATELMMKMLSK------G-LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK--------QKC-RTA 584 (701)
Q Consensus 521 i~~~~~~g~~~~A~~~~~~m~~~------~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~ 584 (701)
..+|...|++++|..+|.+.... . .+....++..+...|...|++++|..++++++.. .|. ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998864 1 1223667888899999999999999999999887 333 467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHH--HhC-C-CCCC-
Q 037695 585 YNQVIENLCSFGYLEEAGKILGKVLRTA--------SKADASTCHVLVESYLNKGIPLLAYKVACRM--FNR-N-LIPD- 651 (701)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~-~-~~p~- 651 (701)
+..++.+|...|++++|...++++++.. .......+..+...+...+....+..+.... .+. + ..|+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 8889999999999999999999998751 1222334444444454444444333222111 111 1 1122
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 652 LKLCKKVSERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 652 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
..++..++.+|...|++++|..+++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 367888999999999999999999998864
No 87
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.24 E-value=1.3e-10 Score=107.55 Aligned_cols=127 Identities=10% Similarity=0.020 Sum_probs=83.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-
Q 037695 555 VIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI- 632 (701)
Q Consensus 555 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 632 (701)
+..+|.+.|++++|+..|+++++..|. ..++..++.+|...|++++|+..|+++++..+. ++..+..++..|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHH
Confidence 667777777777777777777777776 667777777777777777777777777776533 66777777777666553
Q ss_pred -hhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 633 -PLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHI 684 (701)
Q Consensus 633 -~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 684 (701)
...+...+++... +.|....+...+.++...|++++|+..|+++++..|.
T Consensus 139 ~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 139 EKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 2334444444432 2222233444566666777778888888777777764
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.22 E-value=1e-10 Score=114.77 Aligned_cols=207 Identities=10% Similarity=-0.001 Sum_probs=150.8
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 037695 459 KMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLC----KKDPD-TVTYTTIIDALSKNGRVEEA 533 (701)
Q Consensus 459 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A 533 (701)
++++|...|..+ ...|...|++++|+..|.+.... |-.+. ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777665 34567788888888888877642 21111 45788888889999999999
Q ss_pred HHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHH
Q 037695 534 TELMMKMLSK----GLVP-TVVTYRTVIHRYCQV-GRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEE 600 (701)
Q Consensus 534 ~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~ 600 (701)
+..|++.+.. |-.+ -..++..+...|... |++++|+..|++++...|. ..++..++..|...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9988887753 2110 145778888889886 9999999999998876542 2467888999999999999
Q ss_pred HHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH------hhHHHHHHHHH--hcC
Q 037695 601 AGKILGKVLRTASKADA------STCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL------KLCKKVSERLI--LEG 666 (701)
Q Consensus 601 A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g 666 (701)
|+..++++++..+.... ..+..++.++...|++++|+..++++++ +.|+. ..+..++..+. ..+
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~ 254 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSE 254 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence 99999999987654332 1567788889999999999999999888 55543 13444555554 457
Q ss_pred CHHHHHHHHHHHHHcC
Q 037695 667 KSEEADTLMLRFVERG 682 (701)
Q Consensus 667 ~~~~A~~~~~~~~~~~ 682 (701)
++++|+..|+++.+..
T Consensus 255 ~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 255 QLSEHCKEFDNFMRLD 270 (292)
T ss_dssp THHHHHHHHTTSSCCC
T ss_pred HHHHHHHHhccCCccH
Confidence 7889998887776544
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=1e-10 Score=114.05 Aligned_cols=225 Identities=15% Similarity=0.112 Sum_probs=160.3
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHH
Q 037695 420 RREGKLSEACDVVREMVKK-------GFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNK------GC-AVNVVNFTSL 485 (701)
Q Consensus 420 ~~~g~~~~A~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 485 (701)
...|++++|...+++.++. ..+....++..+...+...|++++|...++++.+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3567777777777766552 22334567888999999999999999999998765 22 2345678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHH
Q 037695 486 IRGFCQKGDLEEALSLLDDMYLC------KKDP-DTVTYTTIIDALSKNGRVEEATELMMKMLSK------GLVP-TVVT 551 (701)
Q Consensus 486 l~~~~~~g~~~~A~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~ 551 (701)
...|...|++++|+..|.+.... ...| ...++..+..+|...|++++|..+++++.+. +-.| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998763 1112 3567888999999999999999999999874 1122 3567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc---------CCC-hhHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCC
Q 037695 552 YRTVIHRYCQVGRVEDLLKLLEKMLSK---------QKC-RTAYNQVIENLCSFGY------LEEAGKILGKVLRTASKA 615 (701)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~ 615 (701)
+..+...|...|++++|..+++++.+. .+. ...+..+...+...+. +.++...+..... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888999999999999999999999875 222 2344444444443332 3333333333221 1122
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 616 DASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 616 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
...++..++..|...|++++|..+++++++
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345788899999999999999999999876
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.19 E-value=7.5e-09 Score=99.19 Aligned_cols=184 Identities=10% Similarity=0.021 Sum_probs=109.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 463 AKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKD-PDTVTYTTIIDALSKNGRVEEATELMMKML 541 (701)
Q Consensus 463 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 541 (701)
|...+++....+ +++..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455555555443 334444456666777777777777777776554321 244556666777777777777777777776
Q ss_pred hCCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 542 SKGLVP-----TVVTYRTVIHR--YCQVG--RVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTA 612 (701)
Q Consensus 542 ~~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (701)
+. .| +..+...++.+ ....| ++.+|..+|+++....|+......+..++...|++++|...++.+.+..
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 63 45 24444445544 22233 6777777777777666652222333336667777777777777655431
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHh
Q 037695 613 ---------SKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLK 653 (701)
Q Consensus 613 ---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 653 (701)
-+.++.++..+|......|+ +|.++++++.+ ..|+..
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~--~~P~hp 287 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK--LDHEHA 287 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--TTCCCH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--hCCCCh
Confidence 02355666556555555665 66777777777 556554
No 91
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.19 E-value=9.2e-10 Score=106.09 Aligned_cols=187 Identities=13% Similarity=0.075 Sum_probs=132.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC-HH
Q 037695 441 FPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVN---VVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK-DPD-TV 515 (701)
Q Consensus 441 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~-~~ 515 (701)
+.+...+..+...+.+.|++++|...|+.+.+.. +.+ ...+..+..+|.+.|++++|+..|++..+... .|. ..
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 4466778888889999999999999999998873 323 67788899999999999999999999987432 222 45
Q ss_pred HHHHHHHHHHh--------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHH
Q 037695 516 TYTTIIDALSK--------NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQ 587 (701)
Q Consensus 516 ~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 587 (701)
.+..+..++.. .|++++|+..|+++++.. |.+......+... ..+... ....+..
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~--------------~~~~~~--~~~~~~~ 153 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKI--------------RELRAK--LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHH--------------HHHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHH--------------HHHHHH--HHHHHHH
Confidence 67778888888 999999999999999863 2232222221111 000000 0123556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc----------CChhhHHHHHHHHHh
Q 037695 588 VIENLCSFGYLEEAGKILGKVLRTASKA--DASTCHVLVESYLNK----------GIPLLAYKVACRMFN 645 (701)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~ 645 (701)
++..|...|++++|+..|+++++..+.. ....+..++.+|... |++++|+..++++++
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~ 223 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ 223 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence 6777777788888888887777764332 244666677777755 777888888888877
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.18 E-value=7.1e-09 Score=99.34 Aligned_cols=259 Identities=10% Similarity=0.018 Sum_probs=178.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 037695 418 GLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEE 497 (701)
Q Consensus 418 ~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 497 (701)
-..-.|.+..++.- ..+............+.+++...|++... ....|....+..+.. |...+
T Consensus 22 n~fy~G~yq~~i~e---~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQE---IEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHH---HHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----
T ss_pred HHHHhhHHHHHHHH---HHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----
Confidence 34456777766652 22222122223344455667777766531 112333333333333 33322
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 498 ALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGL-VPTVVTYRTVIHRYCQVGRVEDLLKLLEKML 576 (701)
Q Consensus 498 A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 576 (701)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 788888887654 56667777889999999999999999999877652 1357778888999999999999999999999
Q ss_pred hcCC-----ChhHHHHHHHH--HHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 037695 577 SKQK-----CRTAYNQVIEN--LCSFG--YLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRN 647 (701)
Q Consensus 577 ~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 647 (701)
+..| ...+...++.+ ....| ++.+|..+|+++.+. .|+...-..+..++...|++++|...++.+.+..
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 9888 24455555544 33334 999999999998764 3443333334448999999999999999776631
Q ss_pred -----C---CCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhhhhhh
Q 037695 648 -----L---IPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQRQRVF 698 (701)
Q Consensus 648 -----~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 698 (701)
. .|+ ..++..++......|+ +|.++++++.+..|..|-+...-.....|
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k~~~F 299 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEIDAKF 299 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 1 244 4666577777777887 89999999999999888887777666555
No 93
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.17 E-value=9.7e-10 Score=101.68 Aligned_cols=136 Identities=15% Similarity=-0.006 Sum_probs=107.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCC
Q 037695 519 TIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGY 597 (701)
Q Consensus 519 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 597 (701)
.+..+|...|++++|+..|++.++.. |-+...+..+..++...|++++|+..|+++++..|+ ..++..++.+|...|.
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence 38889999999999999999999864 557889999999999999999999999999999998 7888999988876654
Q ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHH
Q 037695 598 --LEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVS 659 (701)
Q Consensus 598 --~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 659 (701)
.+.+...+.++.. +.|....+..++.++...|++++|+..|+++++ +.|+......+.
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 4455666666542 233334455667788889999999999999998 778765444433
No 94
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.17 E-value=5.8e-10 Score=109.39 Aligned_cols=205 Identities=11% Similarity=-0.023 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--C-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 462 GAKKFMQECLNKGCAVNVVNFTSLIRGFCQK--G-DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMM 538 (701)
Q Consensus 462 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~--g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 538 (701)
+|..++.+..+. .+++...| .+ .+. + ++++|...|.+. +..|...|++++|...|.
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 456666666655 33222222 22 232 2 488899888877 346788999999999999
Q ss_pred HHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhc-CCHHHHHHHH
Q 037695 539 KMLSK----GLVPT-VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSF-GYLEEAGKIL 605 (701)
Q Consensus 539 ~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~-g~~~~A~~~~ 605 (701)
+.... |-++. ..+|..+..+|.+.|++++|+..+++++...+. ..++..++.+|... |++++|+..|
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 88763 31222 568899999999999999999999999876432 34788899999996 9999999999
Q ss_pred HHHHHcCCCC-C----HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH------hhHHHHHHHHHhcCCHHHHHHH
Q 037695 606 GKVLRTASKA-D----ASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL------KLCKKVSERLILEGKSEEADTL 674 (701)
Q Consensus 606 ~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~ 674 (701)
+++++..+.. + ..++..++..|...|++++|+..++++.+....... ..+..++.++...|++++|+..
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9998764321 1 356888999999999999999999999994433221 1567788899999999999999
Q ss_pred HHHHHHcCCCCCc
Q 037695 675 MLRFVERGHIQPK 687 (701)
Q Consensus 675 ~~~~~~~~~~~~~ 687 (701)
|+++++..|..+.
T Consensus 222 ~~~al~l~p~~~~ 234 (292)
T 1qqe_A 222 LQEGQSEDPNFAD 234 (292)
T ss_dssp HHGGGCC------
T ss_pred HHHHHhhCCCCCC
Confidence 9999988775554
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.15 E-value=2.3e-09 Score=100.55 Aligned_cols=189 Identities=10% Similarity=0.017 Sum_probs=127.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHH
Q 037695 478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKD-PD-TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTV---VTY 552 (701)
Q Consensus 478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~ 552 (701)
+...+..+...+...|++++|+..|+++...... |. ...+..+..+|.+.|++++|+..|+++++.. |-+. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 3445566677788888888888888888764221 11 3467777888888888888888888888753 1121 244
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 553 RTVIHRYCQ------------------VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS 613 (701)
Q Consensus 553 ~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 613 (701)
..+..++.. .|++++|+..|+++++..|+ ..+.......... ....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~----------~~~~----- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFL----------KDRL----- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH----------HHHH-----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHH----------HHHH-----
Confidence 445555543 45677777777777777766 2222211111000 0000
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695 614 KADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL----KLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK 687 (701)
Q Consensus 614 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 687 (701)
......++..|.+.|++++|+..++++++. .|+. ..+..++.+|.+.|++++|++.++++...+|.+..
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 011235677899999999999999999994 4442 57888999999999999999999999998875543
No 96
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.15 E-value=2.5e-09 Score=90.74 Aligned_cols=131 Identities=15% Similarity=0.128 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN 629 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 629 (701)
.|..++..+...|++++|..+++++....|. ...+..++..+...|++++|..+++++++.. +.+...+..++..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 3445556666666666666666666655554 4555566666666666666666666666554 2345566666666777
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 630 KGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 630 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
.|++++|+..++++.+.... +...+..++.++...|++++|..+++++.+..|
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred hcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 77777777777766663221 345566667777777777777777777766554
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.13 E-value=2.4e-10 Score=99.41 Aligned_cols=140 Identities=11% Similarity=-0.024 Sum_probs=77.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHH
Q 037695 523 ALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEA 601 (701)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 601 (701)
.+...|++++|+..+....... +.++..+..+...|.+.|++++|++.|+++++..|+ ..++..++.+|...|++++|
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHH
Confidence 3344455666666665554421 112333445556666666666666666666666665 55666666666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH-HHHHHhCCCCCC-HhhHHHHHHHHHhcC
Q 037695 602 GKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKV-ACRMFNRNLIPD-LKLCKKVSERLILEG 666 (701)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~p~-~~~~~~l~~~~~~~g 666 (701)
+..|+++++..+. ++..+..++..|.+.|++++|... ++++++ +.|+ ..+|......+...|
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 6666666665432 555666666666666666554443 355665 3343 344444444444444
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.12 E-value=1.3e-09 Score=120.15 Aligned_cols=171 Identities=12% Similarity=-0.043 Sum_probs=97.2
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037695 490 CQKGDLEEALSLLDDMY--------LCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ 561 (701)
Q Consensus 490 ~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 561 (701)
...|++++|++.+++.. +.. +.+...+..+..+|...|++++|+..|+++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44556666666666555 211 2234455555666666666666666666666542 3345556666666666
Q ss_pred cCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHH
Q 037695 562 VGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVA 640 (701)
Q Consensus 562 ~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 640 (701)
.|++++|+..|+++++..|+ ..++..++.+|...|++++ +..|+++++..+. +...|..++.+|...|++++|+..|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666666666655 4556666666666666666 6666666665432 5555666666666666666666666
Q ss_pred HHHHhCCCCCCH-hhHHHHHHHHHhcC
Q 037695 641 CRMFNRNLIPDL-KLCKKVSERLILEG 666 (701)
Q Consensus 641 ~~~~~~~~~p~~-~~~~~l~~~~~~~g 666 (701)
+++.+ +.|+. ..+..++.++...|
T Consensus 558 ~~al~--l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 558 DEVPP--TSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HTSCT--TSTTHHHHHHHHHHHTC---
T ss_pred Hhhcc--cCcccHHHHHHHHHHHHccC
Confidence 66655 44443 44555555554433
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=5.6e-09 Score=88.51 Aligned_cols=127 Identities=18% Similarity=0.188 Sum_probs=76.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc
Q 037695 517 YTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF 595 (701)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 595 (701)
|..+...+...|++++|..+++++.+.. +.+...+..++..+...|++++|..+++++....|. ...+..++..+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4445555555666666666666655542 334555555666666666666666666666655554 44555666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 596 GYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
|++++|...++++++..+ .+...+..++..+...|++++|...++++.+
T Consensus 83 ~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666665442 2455566666666666666666666666665
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=2.9e-10 Score=98.85 Aligned_cols=131 Identities=13% Similarity=0.006 Sum_probs=112.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 037695 555 VIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP 633 (701)
Q Consensus 555 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 633 (701)
|...+...|++++|+..+++.....|. +..+..++..|...|++++|+..|+++++..+. ++.+|..++.+|...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence 445566778999999999999888776 567788999999999999999999999998754 899999999999999999
Q ss_pred hhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCch
Q 037695 634 LLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTL-MLRFVERGHIQPKS 688 (701)
Q Consensus 634 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~ 688 (701)
++|+..|+++++ +.|+ ...+..++.+|.+.|++++|.+. ++++++..|..|..
T Consensus 82 ~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 82 DKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 999999999999 5554 58899999999999999877665 69999999877654
No 101
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.07 E-value=4.2e-09 Score=114.12 Aligned_cols=152 Identities=11% Similarity=-0.043 Sum_probs=102.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695 492 KGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKL 571 (701)
Q Consensus 492 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 571 (701)
.|++++|+..|++..+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467778888888776642 3346677777778888888888888888887753 44577777788888888888888888
Q ss_pred HHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChhhHHHHHHHHHhC
Q 037695 572 LEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNK---GIPLLAYKVACRMFNR 646 (701)
Q Consensus 572 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 646 (701)
++++++..|. ...+..++.+|...|++++|...++++++..+ .+...+..++..+... |++++|...++++++.
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 8888877776 66777788888888888888888888877653 3667777778888888 8888888888888773
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.07 E-value=9.7e-08 Score=92.60 Aligned_cols=218 Identities=10% Similarity=0.029 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CCH
Q 037695 460 MDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG--DLEEALSLLDDMYLCKKDPDTVTYTTIIDAL----SKN---GRV 530 (701)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~~---g~~ 530 (701)
.++|+.++..++..+ |-+...|+.--.++...| ++++++.+++.+.... +-+..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 356777777777653 335566777777777777 8888888888888743 33445565544444 444 788
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCC------HHHH
Q 037695 531 EEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVE--DLLKLLEKMLSKQKC-RTAYNQVIENLCSFGY------LEEA 601 (701)
Q Consensus 531 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~------~~~A 601 (701)
++++.+++.+.+.. +-+..+|..-..++.+.|.++ +++++++++++.+|. ..+|+.-...+...|+ ++++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence 99999999999864 567888888888888888888 999999999998887 6788887888877776 8999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh-HHHHHHHHHhCC-C-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 602 GKILGKVLRTASKADASTCHVLVESYLNKGIPLL-AYKVACRMFNRN-L-IPDLKLCKKVSERLILEGKSEEADTLMLRF 678 (701)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (701)
++.+++++...+. |...|+.+...+.+.|+... ...++.++.+.+ . ..+...+..++.+|.+.|+.++|+++++++
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l 284 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL 284 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999988754 89999999999999887555 445666666532 1 125678888999999999999999999999
Q ss_pred HHc
Q 037695 679 VER 681 (701)
Q Consensus 679 ~~~ 681 (701)
.+.
T Consensus 285 ~~~ 287 (306)
T 3dra_A 285 KSK 287 (306)
T ss_dssp HHT
T ss_pred Hhc
Confidence 874
No 103
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.06 E-value=1.9e-08 Score=93.08 Aligned_cols=177 Identities=12% Similarity=-0.030 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 037695 497 EALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG----RVEDLLKLL 572 (701)
Q Consensus 497 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~~~ 572 (701)
+|++.|++..+.| +...+..|...|...+++++|+..|++..+.| ++..+..|...|.. + ++++|+++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666665543 55566666666666777777777777776654 45566666666665 5 677777777
Q ss_pred HHHHhcCCChhHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCChhhHHHHHHHH
Q 037695 573 EKMLSKQKCRTAYNQVIENLCS----FGYLEEAGKILGKVLRTASK-ADASTCHVLVESYLN----KGIPLLAYKVACRM 643 (701)
Q Consensus 573 ~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~ 643 (701)
+++... ..+.++..|+..|.. .+++++|+.+|+++.+.+.. .++..+..|+..|.. .+++++|+..++++
T Consensus 77 ~~A~~~-g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 77 EKAVEA-GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHHHT-TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHHC-CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 777543 245666667766665 66777777777777665421 125666677777777 66777777777777
Q ss_pred HhCCCCCCHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcCC
Q 037695 644 FNRNLIPDLKLCKKVSERLILE-G-----KSEEADTLMLRFVERGH 683 (701)
Q Consensus 644 ~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 683 (701)
.+. .++...+..++..|... | ++++|..+|+++.+.|.
T Consensus 156 ~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 773 22344566677666643 2 77888888888877763
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.05 E-value=1.9e-09 Score=96.69 Aligned_cols=156 Identities=13% Similarity=0.044 Sum_probs=65.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHH-HHhcCCHHH
Q 037695 522 DALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIEN-LCSFGYLEE 600 (701)
Q Consensus 522 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~ 600 (701)
..+...|++++|...|++..+.. |.+...+..+..++...|++++|+..++++....|++..+..+... +...+...+
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~ 92 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESP 92 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccch
Confidence 33444444444444444443321 2233444444444444444444444444444443321111111111 111111122
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 601 AGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLILEGKSEEADTLMLRFV 679 (701)
Q Consensus 601 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (701)
|+..++++++..+. ++..+..++..+...|++++|+..++++++.++.+ +...+..++.++...|+.++|...|++++
T Consensus 93 a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 44445554444322 34444555555555555555555555555522221 12344445555555555555555555443
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.05 E-value=3.7e-07 Score=95.88 Aligned_cols=382 Identities=10% Similarity=-0.023 Sum_probs=191.7
Q ss_pred HcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCC-hhHH
Q 037695 188 RAG-KLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHR-IKDA 265 (701)
Q Consensus 188 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~-~~~A 265 (701)
+.| ++..|..+|+.+... -|. |+++.+..+|++.... .|++..|...+....+.+. .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 345 366677777776542 122 7788888888887764 4677777777766666553 3445
Q ss_pred HHHHHHchhC-CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHH
Q 037695 266 IKLIDEMPLK-GCSP-DKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYT 343 (701)
Q Consensus 266 ~~~~~~m~~~-g~~p-d~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 343 (701)
..+|+..... |..| +...|...+..+... ....++.+.+..+|+.........-...|.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~-------------------~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~ 128 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKI-------------------EDEQTRIEKIRNGYMRALQTPMGSLSELWK 128 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSC-------------------SSHHHHHHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhc-------------------hhhhHHHHHHHHHHHHHHhChhhhHHHHHH
Confidence 5566655432 3222 334444444322110 011245666777777777631110111122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 037695 344 AVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREG 423 (701)
Q Consensus 344 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 423 (701)
.... +.+......+..++.... +.+..|..++..+...-...+...|...+.--...+
T Consensus 129 ~Y~~-fE~~~~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~ 186 (493)
T 2uy1_A 129 DFEN-FELELNKITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENG 186 (493)
T ss_dssp HHHH-HHHHHCHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCT
T ss_pred HHHH-HHHHhccccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC
Confidence 1111 111111222222222111 122333333333322100012233433333322110
Q ss_pred --C-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 037695 424 --K-----LSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLE 496 (701)
Q Consensus 424 --~-----~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 496 (701)
- .+.+..+|++++... +.++..|...+..+...|+++.|..++++.... |.+...|.. |....+.+
T Consensus 187 ~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~ 259 (493)
T 2uy1_A 187 MKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEE 259 (493)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCT
T ss_pred ccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchh
Confidence 0 234566777777653 455777777777777788888888888888776 334333332 22211111
Q ss_pred HHHHHHHHHHhCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C
Q 037695 497 EALSLLDDMYLCK---------KDP---DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQV-G 563 (701)
Q Consensus 497 ~A~~~~~~~~~~~---------~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g 563 (701)
+. ++.+.+.- ..+ ....|...+..+.+.+..+.|..+|++. ... ..+...|...+..-... +
T Consensus 260 ~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~ 334 (493)
T 2uy1_A 260 AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATG 334 (493)
T ss_dssp HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHC
T ss_pred HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCC
Confidence 11 22221100 001 1234555555555666777788888777 321 22444444333222222 3
Q ss_pred CHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHH
Q 037695 564 RVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACR 642 (701)
Q Consensus 564 ~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 642 (701)
+.+.|..+|+.+++..|+ +..+...+......|+.+.|..+|+++. .....|...+..-...|+.+.+.+++++
T Consensus 335 d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 577788888877776666 4455556666667777777777777762 2466676776666667777777777776
Q ss_pred HHh
Q 037695 643 MFN 645 (701)
Q Consensus 643 ~~~ 645 (701)
+..
T Consensus 410 ~~~ 412 (493)
T 2uy1_A 410 KMD 412 (493)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.05 E-value=2.3e-08 Score=92.53 Aligned_cols=173 Identities=10% Similarity=-0.047 Sum_probs=119.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 037695 463 AKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNG----RVEEATELMM 538 (701)
Q Consensus 463 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g----~~~~A~~~~~ 538 (701)
|...|++..+.| ++..+..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|..+|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 455555555543 56666667777777777777777777776644 45556666666665 5 7777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC---hhHHHHHHHHHHh----cCCHHHHHHHHHH
Q 037695 539 KMLSKGLVPTVVTYRTVIHRYCQ----VGRVEDLLKLLEKMLSKQKC---RTAYNQVIENLCS----FGYLEEAGKILGK 607 (701)
Q Consensus 539 ~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 607 (701)
+..+.| ++..+..|...|.. .+++++|+++|+++...++. +.++..|+.+|.. .+++++|..+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 777654 56666677777765 67788888888888777764 6677777777777 6778888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc-C-----ChhhHHHHHHHHHhCC
Q 037695 608 VLRTASKADASTCHVLVESYLNK-G-----IPLLAYKVACRMFNRN 647 (701)
Q Consensus 608 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 647 (701)
+.+. ..++..+..|+.+|... | ++++|+..++++.+.|
T Consensus 155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 8775 23445666777776653 2 7778888887777754
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=8.9e-09 Score=100.48 Aligned_cols=166 Identities=12% Similarity=0.003 Sum_probs=106.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhH-HHHHHHH
Q 037695 513 DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTA-YNQVIEN 591 (701)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~ 591 (701)
+...+..+...+...|++++|...|++..... +-+...+..+...+.+.|++++|...++++....|+... .......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34455566666667777777777777776653 345666667777777777777777777777666665322 2223333
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHH
Q 037695 592 LCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLILEGKSEE 670 (701)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 670 (701)
+...++.++|+..++++++..+ .+...+..++..|...|++++|+..+.++++.++.. +...+..++.+|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 5556666667777777776653 366667777777777777777777777777733221 13566677777777777777
Q ss_pred HHHHHHHHHH
Q 037695 671 ADTLMLRFVE 680 (701)
Q Consensus 671 A~~~~~~~~~ 680 (701)
|...|++.+.
T Consensus 274 a~~~~r~al~ 283 (287)
T 3qou_A 274 LASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766553
No 108
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.02 E-value=2.3e-08 Score=93.69 Aligned_cols=188 Identities=15% Similarity=0.052 Sum_probs=128.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCH-HHHH
Q 037695 443 TPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAV--NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKD-PDT-VTYT 518 (701)
Q Consensus 443 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-p~~-~~~~ 518 (701)
++..+..+...+...|++++|...|+.+....... ....+..+..+|.+.|++++|+..|+++.+.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566677788999999999999999998863221 1356778899999999999999999999874322 111 2455
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037695 519 TIIDALSK------------------NGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK 580 (701)
Q Consensus 519 ~li~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 580 (701)
.+..++.. .|++++|+..|+++++.. |-+...+........ +....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~----------~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVF----------LKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHH----------HHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHH----------HHHHH-----
Confidence 55555554 578999999999999863 323333322111100 00000
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 037695 581 CRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFNRN 647 (701)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 647 (701)
......++..|.+.|++++|+..|+++++..+... ...+..++.+|.+.|++++|++.++.+...+
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 11223567778888888888888888887654321 2467778888888888888888888887743
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.01 E-value=3.5e-09 Score=94.95 Aligned_cols=161 Identities=16% Similarity=0.079 Sum_probs=120.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 037695 482 FTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHR-YC 560 (701)
Q Consensus 482 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~ 560 (701)
+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++..... |++..+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 4456667778888888888888776532 3356677888888888888888888888876643 355443332222 22
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHH
Q 037695 561 QVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA-DASTCHVLVESYLNKGIPLLAYK 638 (701)
Q Consensus 561 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 638 (701)
..+....|+..++++++..|. ...+..++.++...|++++|...++++++..+.+ +...+..++..+...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 223344578889999988887 7888889999999999999999999998876543 46678889999999999999999
Q ss_pred HHHHHHh
Q 037695 639 VACRMFN 645 (701)
Q Consensus 639 ~~~~~~~ 645 (701)
.|++.+.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988765
No 110
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.01 E-value=4.6e-07 Score=95.18 Aligned_cols=344 Identities=8% Similarity=-0.098 Sum_probs=213.0
Q ss_pred CcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHc-CC-CCCHHHHHHHHHHHH----hcCCH
Q 037695 318 GRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGE-LDQAKKMLQQMYHH-GC-KPNTVSYTAFLNGLC----HNGKS 390 (701)
Q Consensus 318 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~----~~g~~ 390 (701)
|+++.+..+|+..... .|+...|...+....+.+. .+....+|+..+.. |. ..+...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 4566666666666653 4788899888887777663 45667788877763 43 236677777776544 34678
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHH-------------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695 391 LEAREMINTSEEEWWTPNAITYSVVMHGLR-------------REGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCRE 457 (701)
Q Consensus 391 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-------------~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 457 (701)
+.+.++|++........-...|......-. ..+.+..|..+++.+...--..+...|...+..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 889999999987321111112221111100 0112233444444443210011333454444432221
Q ss_pred --CC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 037695 458 --GK-----MDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRV 530 (701)
Q Consensus 458 --g~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 530 (701)
+- ...+..+|++++.. ++.+...|...+..+.+.|+++.|..+|++.... +.+...|. .|......
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~ 258 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDE 258 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTC
T ss_pred CccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcch
Confidence 11 34577899998886 4667888999999899999999999999999986 33333332 22222111
Q ss_pred HHHHHHHHHHHhC---------CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHhcC-
Q 037695 531 EEATELMMKMLSK---------GLVP---TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK-CRTAYNQVIENLCSFG- 596 (701)
Q Consensus 531 ~~A~~~~~~m~~~---------~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g- 596 (701)
++. ++.+.+. +..+ ....|...+..+.+.+..+.|..+|+++ ...+ ....|...+..-...+
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~ 334 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATG 334 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHC
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCC
Confidence 121 2222211 0011 1345666777777788999999999999 3222 2344443333333334
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 037695 597 YLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLML 676 (701)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 676 (701)
+.+.|..+|+.+++.- +.++..|...+......|+.+.|..+|+++.+ ....+...+..-...|+.+.+..+++
T Consensus 335 d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6999999999999864 33566677788888899999999999998732 46777777776677899999999998
Q ss_pred HHHH
Q 037695 677 RFVE 680 (701)
Q Consensus 677 ~~~~ 680 (701)
++.+
T Consensus 409 ~~~~ 412 (493)
T 2uy1_A 409 QKMD 412 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8875
No 111
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.00 E-value=2.3e-09 Score=118.25 Aligned_cols=159 Identities=10% Similarity=-0.041 Sum_probs=141.0
Q ss_pred HhcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc
Q 037695 525 SKNGRVEEATELMMKML--------SKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF 595 (701)
Q Consensus 525 ~~~g~~~~A~~~~~~m~--------~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 595 (701)
...|++++|++.+++.. +.. +.+...+..+..++.+.|++++|+..|+++++.+|+ ..++..++.+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 67899999999999998 432 556788899999999999999999999999999887 78999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHH
Q 037695 596 GYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLILEGKSEEADTL 674 (701)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 674 (701)
|++++|+..|+++++..+. +...+..++.+|...|++++ +..|+++++ +.| +...+..++.+|.+.|++++|+..
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999998754 77888999999999999999 999999999 445 458889999999999999999999
Q ss_pred HHHHHHcCCCCCch
Q 037695 675 MLRFVERGHIQPKS 688 (701)
Q Consensus 675 ~~~~~~~~~~~~~~ 688 (701)
|+++++.++..+..
T Consensus 557 ~~~al~l~P~~~~a 570 (681)
T 2pzi_A 557 LDEVPPTSRHFTTA 570 (681)
T ss_dssp HHTSCTTSTTHHHH
T ss_pred HHhhcccCcccHHH
Confidence 99999887654443
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.99 E-value=6.9e-09 Score=86.86 Aligned_cols=108 Identities=8% Similarity=-0.058 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHH
Q 037695 582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSE 660 (701)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~ 660 (701)
...+...+..|.+.|++++|+..|+++++..+ .++..|..++.+|...|++++|+..++++++ +.|+ ...+..++.
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~ 89 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHH
Confidence 34555666666666666666666666666553 2566666666666667777777777666666 3333 456666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCchHHHH
Q 037695 661 RLILEGKSEEADTLMLRFVERGHIQPKSEEHL 692 (701)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 692 (701)
+|...|++++|++.|+++++..|..+.....|
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 77777777777777777777666555544444
No 113
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.98 E-value=5e-09 Score=103.54 Aligned_cols=222 Identities=14% Similarity=0.049 Sum_probs=158.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 037695 422 EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCR-EGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALS 500 (701)
Q Consensus 422 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 500 (701)
.|++++|.+++++..+.. +. .+.. .++++.|...|..+ ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 467778888888776642 11 1222 57777777776654 456788899999999
Q ss_pred HHHHHHhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 037695 501 LLDDMYLCKK---DP--DTVTYTTIIDALSKNGRVEEATELMMKMLSK----GLVPT--VVTYRTVIHRYCQVGRVEDLL 569 (701)
Q Consensus 501 ~~~~~~~~~~---~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~ 569 (701)
.|.+...... .+ -..+|+.+..+|...|++++|+..|++.+.. | .+. ..++..+...|.. |++++|+
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 9988764211 11 1347888889999999999999999987753 2 121 4567788888888 9999999
Q ss_pred HHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCChhhHH
Q 037695 570 KLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA-D----ASTCHVLVESYLNKGIPLLAY 637 (701)
Q Consensus 570 ~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~ 637 (701)
..|++++...+. ..++..++..|...|++++|+..|+++++..... + ...+..++..+...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999998876432 3567888999999999999999999998764322 2 235666777888889999999
Q ss_pred HHHHHHHhCCCCC-CH---hhHHHHHHHHHhcCCHHHHHH
Q 037695 638 KVACRMFNRNLIP-DL---KLCKKVSERLILEGKSEEADT 673 (701)
Q Consensus 638 ~~~~~~~~~~~~p-~~---~~~~~l~~~~~~~g~~~~A~~ 673 (701)
..+++.+ ..... +. .....++..+ ..|+.+.+..
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999998 43221 11 2344555544 5778776666
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.97 E-value=1e-09 Score=94.82 Aligned_cols=108 Identities=10% Similarity=-0.046 Sum_probs=77.7
Q ss_pred HHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-H
Q 037695 575 MLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-L 652 (701)
Q Consensus 575 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~ 652 (701)
++...|+ ...+..++..+...|++++|+..|+++++..+. ++..|..++.+|...|++++|+..|+++++ +.|+ .
T Consensus 28 al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~--l~P~~~ 104 (151)
T 3gyz_A 28 INAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFA--LGKNDY 104 (151)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSSSCC
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHh--hCCCCc
Confidence 3344555 456677777777778888888888777776533 677777777778888888888888887777 4443 4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695 653 KLCKKVSERLILEGKSEEADTLMLRFVERGHIQ 685 (701)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 685 (701)
..+..++.+|.+.|++++|+..|+++++..+.+
T Consensus 105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 105 TPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 667777777888888888888888887776543
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.97 E-value=4.4e-09 Score=90.99 Aligned_cols=114 Identities=14% Similarity=-0.010 Sum_probs=61.1
Q ss_pred HHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 037695 572 LEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP 650 (701)
Q Consensus 572 ~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 650 (701)
|++++...|. ...+..++..+...|++++|+..|++++...+ .++..|..++.+|...|++++|+..|++++. +.|
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p 86 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAV--MDI 86 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HST
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCC
Confidence 4444444443 34445555555555555555555555555442 2555555555555555666666666655555 223
Q ss_pred C-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 037695 651 D-LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKS 688 (701)
Q Consensus 651 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 688 (701)
+ ...+..++.+|...|++++|+..|+++++..+..|..
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 2 3455555555556666666666666665555544443
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.95 E-value=2.9e-07 Score=89.26 Aligned_cols=219 Identities=7% Similarity=-0.040 Sum_probs=168.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---C
Q 037695 423 GKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREG--KMDGAKKFMQECLNKGCAVNVVNFTSLIRGF----CQK---G 493 (701)
Q Consensus 423 g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~---g 493 (701)
...++|+.+++.++... +-+...|+.--..+...+ ++++++.++..++... +-+..+|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 34467888888887764 445566777777777777 8888888888887763 33556666554444 444 7
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------H
Q 037695 494 DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVE--EATELMMKMLSKGLVPTVVTYRTVIHRYCQVGR------V 565 (701)
Q Consensus 494 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------~ 565 (701)
++++++.+++.+.+.. +.+...|+.-..++.+.|.++ ++++.++++++.. +-|...|+.-...+...+. +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 8899999999998754 557788888888888888888 9999999999875 5577788777777777776 8
Q ss_pred HHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 037695 566 EDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEE-AGKILGKVLRTA--SKADASTCHVLVESYLNKGIPLLAYKVAC 641 (701)
Q Consensus 566 ~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 641 (701)
+++++++++++..+|. ..+|+.+...+.+.|+..+ +..+..++.+.+ ...++..+..++..|.+.|+.++|+++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 9999999999999988 7889999999988888444 556777666543 23477888999999999999999999999
Q ss_pred HHHh
Q 037695 642 RMFN 645 (701)
Q Consensus 642 ~~~~ 645 (701)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9886
No 117
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.95 E-value=2e-08 Score=97.90 Aligned_cols=165 Identities=16% Similarity=0.075 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-H
Q 037695 478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTV-I 556 (701)
Q Consensus 478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~ 556 (701)
+...+..+...+...|++++|...|++..... +.+...+..+..+|...|++++|..+++++... .|+....... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 44455556666667777777777777766532 234556666777777777777777777776654 3444332222 2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChh
Q 037695 557 HRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA-DASTCHVLVESYLNKGIPL 634 (701)
Q Consensus 557 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 634 (701)
..+...++.++|+..+++++...|+ ..++..++..|...|++++|...+.++++..+.. +...+..++..|...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 2355666677777777777777776 6677777777777888888888887777765432 2566777777777788777
Q ss_pred hHHHHHHHHHh
Q 037695 635 LAYKVACRMFN 645 (701)
Q Consensus 635 ~A~~~~~~~~~ 645 (701)
+|...|++.+.
T Consensus 273 ~a~~~~r~al~ 283 (287)
T 3qou_A 273 ALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 77777776554
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.93 E-value=1.5e-08 Score=99.97 Aligned_cols=224 Identities=11% Similarity=0.023 Sum_probs=160.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 037695 386 HNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRR-EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAK 464 (701)
Q Consensus 386 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 464 (701)
..|++++|.+++++..+.. +. .+.+ .++++.|...|..+ ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3577889999998877642 11 1222 57888888888765 44677889999999
Q ss_pred HHHHHHHHcC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHH
Q 037695 465 KFMQECLNKG----CAV-NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCK---KDPD--TVTYTTIIDALSKNGRVEEAT 534 (701)
Q Consensus 465 ~~~~~~~~~~----~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~p~--~~~~~~li~~~~~~g~~~~A~ 534 (701)
..|.++.... .+. -..+|+.+..+|...|++++|+..|++..... -.+. ..++..+..+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 9998876541 111 14578888899999999999999999876421 1222 3567888888988 9999999
Q ss_pred HHHHHHHhCCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHH
Q 037695 535 ELMMKMLSKGL---VP--TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAG 602 (701)
Q Consensus 535 ~~~~~m~~~~~---~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~ 602 (701)
..|++.+.... .+ ...++..+...|.+.|++++|+..|++++...|. ...+..++.++...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99999876410 11 1457888899999999999999999999876432 225566777788889999999
Q ss_pred HHHHHHHHcCCCC-CH---HHHHHHHHHHHhcCChhhHHH
Q 037695 603 KILGKVLRTASKA-DA---STCHVLVESYLNKGIPLLAYK 638 (701)
Q Consensus 603 ~~~~~~~~~~~~~-~~---~~~~~l~~~~~~~g~~~~A~~ 638 (701)
..|++++ ..+.. +. .....++.++ ..|+.+.+..
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999998 54321 11 2234445544 5677655444
No 119
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.92 E-value=2.8e-08 Score=107.59 Aligned_cols=155 Identities=8% Similarity=-0.046 Sum_probs=121.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 037695 457 EGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATEL 536 (701)
Q Consensus 457 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 536 (701)
.|++++|...++++.+. .+.+...+..+...|...|++++|...|++..+.. +.+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH-RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999998876 34467889999999999999999999999998853 34578899999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc---CCHHHHHHHHHHHHHcC
Q 037695 537 MMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF---GYLEEAGKILGKVLRTA 612 (701)
Q Consensus 537 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 612 (701)
|++..+.. +.+...+..+..+|.+.|++++|.+.++++.+..|. ..++..++.++... |++++|...++++++.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99999864 556888999999999999999999999999999887 77888999999999 99999999999999887
Q ss_pred CC
Q 037695 613 SK 614 (701)
Q Consensus 613 ~~ 614 (701)
+.
T Consensus 159 p~ 160 (568)
T 2vsy_A 159 VG 160 (568)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.89 E-value=4.7e-08 Score=81.72 Aligned_cols=107 Identities=10% Similarity=0.004 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695 550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYL 628 (701)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 628 (701)
..+......|.+.|++++|++.|+++++..|. ..++..++.+|...|++++|+..++++++..+. +...|..++.+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence 44566667777777777777777777777776 667777777777777777777777777776533 6677777777777
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCH-hhHHHHH
Q 037695 629 NKGIPLLAYKVACRMFNRNLIPDL-KLCKKVS 659 (701)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~ 659 (701)
..|++++|+..|+++++ +.|+. .....+.
T Consensus 93 ~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~ 122 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ--VDPSNEEAREGVR 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--HCcCCHHHHHHHH
Confidence 77777777777777777 44543 4444443
No 121
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.86 E-value=1.6e-07 Score=87.04 Aligned_cols=122 Identities=12% Similarity=-0.052 Sum_probs=62.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCH
Q 037695 520 IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYL 598 (701)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 598 (701)
+...+...|++++|...|++. +.|+..++..+...+...|++++|+..+++++...|. ..++..++.+|...|++
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccH
Confidence 334444555555555555443 2334445555555555555555555555555554444 44455555555555555
Q ss_pred HHHHHHHHHHHHcCCCC---------------CHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 599 EEAGKILGKVLRTASKA---------------DASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 599 ~~A~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
++|+..++++++..+.. ....+..++.+|...|++++|+..++++.+
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555555555433211 114455555555555666666655555555
No 122
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=6.5e-07 Score=87.59 Aligned_cols=162 Identities=15% Similarity=0.032 Sum_probs=108.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHH
Q 037695 520 IIDALSKNGRVEEATELMMKMLSKG-LVPTV----VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQ 587 (701)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~ 587 (701)
.+..+...|++++|..++++..+.. ..|+. ..+..+...+...|++++|+..+++++...+. ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3556677788888888887777642 11221 12334555666677888888888888764222 225777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCCC-HhhHH
Q 037695 588 VIENLCSFGYLEEAGKILGKVLRT-----ASK-ADASTCHVLVESYLNKGIPLLAYKVACRMFNR----NLIPD-LKLCK 656 (701)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~ 656 (701)
++.+|...|++++|...++++++. +.. ....++..++..|.+.|++++|+..++++++. +..+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888888887742 111 11246777888888888888888888877762 12222 46778
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHHHc
Q 037695 657 KVSERLILEGK-SEEADTLMLRFVER 681 (701)
Q Consensus 657 ~l~~~~~~~g~-~~~A~~~~~~~~~~ 681 (701)
.++.+|.+.|+ +++|.+.++++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88888888884 68888888888653
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.85 E-value=4e-08 Score=88.04 Aligned_cols=125 Identities=8% Similarity=0.033 Sum_probs=68.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCh--hhH
Q 037695 561 QVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES-YLNKGIP--LLA 636 (701)
Q Consensus 561 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A 636 (701)
..|++++|+..+++++...|. ...+..++.+|...|++++|+..++++++..+. ++..+..++.+ |...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHH
Confidence 345555666666665555554 455555666666666666666666666554422 45555555555 5556665 666
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCc
Q 037695 637 YKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPK 687 (701)
Q Consensus 637 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 687 (701)
+..++++++.+.. +...+..++.+|...|++++|...|+++++..+..+.
T Consensus 101 ~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 150 (177)
T 2e2e_A 101 RAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150 (177)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSC
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCcc
Confidence 6666666653221 2355555666666666666666666666666655444
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.83 E-value=1.3e-07 Score=83.33 Aligned_cols=129 Identities=9% Similarity=-0.052 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695 550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYL 628 (701)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 628 (701)
..+..+...+...|++++|...|++++...|. ..++..++.++...|++++|...++++++..+ .+...+..++.++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 44566667777778888888888877777765 66777777778888888888888888777653 36777777888888
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHhhHH--HHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 629 NKGIPLLAYKVACRMFNRNLIPDLKLCK--KVSERLILEGKSEEADTLMLRFVE 680 (701)
Q Consensus 629 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 680 (701)
..|++++|+..++++.+.+.. +...+. ..+..+...|++++|+..+.+..+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888773322 233442 333346677888888888876644
No 125
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.82 E-value=2.8e-08 Score=85.30 Aligned_cols=94 Identities=13% Similarity=-0.038 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN 629 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 629 (701)
.+..+...+.+.|++++|+..|++++...|. ...+..++.+|...|++++|+..|+++++..+. ++..+..++.+|..
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~ 98 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQ 98 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 3444445555555555555555555555554 445555555555555555555555555554422 44444555555555
Q ss_pred cCChhhHHHHHHHHHh
Q 037695 630 KGIPLLAYKVACRMFN 645 (701)
Q Consensus 630 ~g~~~~A~~~~~~~~~ 645 (701)
.|++++|+..++++++
T Consensus 99 ~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 99 LGDLDGAESGFYSARA 114 (142)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555554
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.82 E-value=7.3e-08 Score=83.13 Aligned_cols=102 Identities=11% Similarity=0.018 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695 549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESY 627 (701)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 627 (701)
...+..+...+.+.|++++|+..|++++...|. +..|..++.+|...|++++|+..|+++++..+. ++..|..++.+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 445666777777888888888888888877776 667777888888888888888888888777644 667777788888
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHh
Q 037695 628 LNKGIPLLAYKVACRMFNRNLIPDLK 653 (701)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~~~~p~~~ 653 (701)
...|++++|+..|+++++ +.|+..
T Consensus 115 ~~lg~~~eA~~~~~~al~--l~~~~~ 138 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQ--HSNDEK 138 (151)
T ss_dssp HHTTCHHHHHHHHHHHHH--HCCCHH
T ss_pred HHcCCHHHHHHHHHHHHH--hCCCHH
Confidence 888888888888888877 455554
No 127
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=3.6e-07 Score=89.40 Aligned_cols=160 Identities=14% Similarity=0.008 Sum_probs=85.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHH
Q 037695 520 IIDALSKNGRVEEATELMMKMLSKGLVPTV------VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYN 586 (701)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~ 586 (701)
.+..+...|++++|...+.+..+.. +... ..+..+...+...|++++|+..+++++...+. ..+++
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 3444455555555555555544432 1111 11223344455556666666666666543211 23556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH---cCCC-C--CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC----CCCC-HhhH
Q 037695 587 QVIENLCSFGYLEEAGKILGKVLR---TASK-A--DASTCHVLVESYLNKGIPLLAYKVACRMFNRN----LIPD-LKLC 655 (701)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~p~-~~~~ 655 (701)
.++..|...|++++|...++++++ .... + ...++..++..|...|++++|+.+++++++.. .... ..++
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666666666666666666666652 1111 0 11456666666777777777777766665521 0111 3566
Q ss_pred HHHHHHHHhcCCHHHH-HHHHHHHHH
Q 037695 656 KKVSERLILEGKSEEA-DTLMLRFVE 680 (701)
Q Consensus 656 ~~l~~~~~~~g~~~~A-~~~~~~~~~ 680 (701)
..++.+|.+.|++++| ..+++++.+
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6677777777777777 666666543
No 128
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.80 E-value=3.7e-06 Score=82.27 Aligned_cols=221 Identities=11% Similarity=0.065 Sum_probs=152.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-CHHHHH
Q 037695 458 GKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG-DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN-G-RVEEAT 534 (701)
Q Consensus 458 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g-~~~~A~ 534 (701)
+..++|+.++..++..+ +-+...|+.--..+...| .+++++.+++.+.... +.+..+|+.-..++... + ++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 33456777777776653 335556666666666667 4888888888887754 34566677666666665 6 778888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCC-------H
Q 037695 535 ELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVE--------DLLKLLEKMLSKQKC-RTAYNQVIENLCSFGY-------L 598 (701)
Q Consensus 535 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~-------~ 598 (701)
.+++++.+.. +-+..+|..-..++.+.|.++ +++++++++++.+|. ..+|+.....+.+.++ +
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHH
Confidence 8888888764 456777766666666555555 888888888888887 6788888888877776 6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh--------------------hhHHHHHHHHHhCC-----CCCCHh
Q 037695 599 EEAGKILGKVLRTASKADASTCHVLVESYLNKGIP--------------------LLAYKVACRMFNRN-----LIPDLK 653 (701)
Q Consensus 599 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~p~~~ 653 (701)
+++++.+++++...+. |...|+.+-..+.+.|+. .........+.... -.+...
T Consensus 225 ~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 225 QDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 8888888888887644 888888887777777764 12222222222211 024567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 654 LCKKVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
....++++|...|+.++|.++++.+.+..
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~~~ 332 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSSEY 332 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhh
Confidence 88889999999999999999999987554
No 129
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.80 E-value=3.3e-07 Score=84.81 Aligned_cols=128 Identities=15% Similarity=0.079 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 037695 482 FTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQ 561 (701)
Q Consensus 482 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 561 (701)
+..+...+...|++++|+..|++. +.|+...|..+..+|...|++++|...|++..... +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 445566777788888888888776 35677788888888888888888888888887754 4567778888888888
Q ss_pred cCCHHHHHHHHHHHHhcCCC-h----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 562 VGRVEDLLKLLEKMLSKQKC-R----------------TAYNQVIENLCSFGYLEEAGKILGKVLRTASK 614 (701)
Q Consensus 562 ~g~~~~A~~~~~~~~~~~p~-~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 614 (701)
.|++++|++.|+++.+..|. . .++..++.+|...|++++|...++++++..+.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 88888888888888876554 2 57778888888888888888888888876543
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.79 E-value=1.2e-07 Score=89.68 Aligned_cols=201 Identities=8% Similarity=-0.070 Sum_probs=138.0
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHh------------CCCC-----
Q 037695 491 QKGDLEEALSLLDDMYLCKKDPDTVTYTTI-------IDALSKNGRVEEATELMMKMLS------------KGLV----- 546 (701)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~------------~~~~----- 546 (701)
..++...|.+.|.++.... +-....|..+ ..++...++..+++..+..-.. .|+-
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777888887777632 2234566655 4555555555555555555443 1110
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH
Q 037695 547 ---PTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD--ASTCH 621 (701)
Q Consensus 547 ---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~ 621 (701)
--......+...+...|++++|.++|+.+...+|.......++..+.+.+++++|+..|+...... .|. ...+.
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV 175 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence 002234456677888899999999998888777764466667778888899999999998665422 111 23677
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHhh
Q 037695 622 VLVESYLNKGIPLLAYKVACRMFNRNLIPD--LKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQR 694 (701)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 694 (701)
.++.++...|++++|+..|++.......|. .......+.++.+.|+.++|...|+++....|. +.....|..
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 788889999999999999998875333264 256677888889999999999999999998887 666655543
No 131
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.79 E-value=8.7e-07 Score=86.66 Aligned_cols=161 Identities=12% Similarity=0.028 Sum_probs=121.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 037695 485 LIRGFCQKGDLEEALSLLDDMYLCKK-DPDT----VTYTTIIDALSKNGRVEEATELMMKMLSKGLV-PT----VVTYRT 554 (701)
Q Consensus 485 ll~~~~~~g~~~~A~~~~~~~~~~~~-~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~ 554 (701)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|+..|++....... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46677888999999999998876321 2221 12334666677778999999999999874222 22 336888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc---C-CC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCC-HHHHH
Q 037695 555 VIHRYCQVGRVEDLLKLLEKMLSK---Q-KC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS----KAD-ASTCH 621 (701)
Q Consensus 555 l~~~~~~~g~~~~A~~~~~~~~~~---~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~-~~~~~ 621 (701)
+...|...|++++|+.+|+++++. . .. ..++..++..|...|++++|+..++++++... .+. ..++.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999998842 1 12 34788899999999999999999998876532 122 67888
Q ss_pred HHHHHHHhcCC-hhhHHHHHHHHHh
Q 037695 622 VLVESYLNKGI-PLLAYKVACRMFN 645 (701)
Q Consensus 622 ~l~~~~~~~g~-~~~A~~~~~~~~~ 645 (701)
.++.+|.+.|+ +++|+..+++++.
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999999998876
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.78 E-value=6.7e-08 Score=88.68 Aligned_cols=156 Identities=12% Similarity=-0.048 Sum_probs=82.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCC-hhHHHHHHHHHHhcCCH
Q 037695 526 KNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK------QKC-RTAYNQVIENLCSFGYL 598 (701)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~-~~~~~~l~~~~~~~g~~ 598 (701)
..|++++|.++++.+... ......++..+...+...|++++|...+++++.. .+. ..++..++..+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 345555555533333221 1123445555555566666666666666655542 111 33455566666666666
Q ss_pred HHHHHHHHHHHHc---CC-C--CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCC---CCCC--HhhHHHHHHHHHhcCC
Q 037695 599 EEAGKILGKVLRT---AS-K--ADASTCHVLVESYLNKGIPLLAYKVACRMFNRN---LIPD--LKLCKKVSERLILEGK 667 (701)
Q Consensus 599 ~~A~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~--~~~~~~l~~~~~~~g~ 667 (701)
++|...+.++++. .. . .....+..++..+...|++++|...+++..+.. ..|. ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666665543 11 1 112345566666666677777766666665411 0111 1344566677777777
Q ss_pred HHHHHHHHHHHHHcC
Q 037695 668 SEEADTLMLRFVERG 682 (701)
Q Consensus 668 ~~~A~~~~~~~~~~~ 682 (701)
+++|..+++++.+..
T Consensus 163 ~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 163 LLEAQQHWLRARDIF 177 (203)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777766543
No 133
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.78 E-value=3.8e-08 Score=95.60 Aligned_cols=195 Identities=10% Similarity=-0.022 Sum_probs=134.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695 478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH 557 (701)
Q Consensus 478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 557 (701)
+...+..+...+...|++++|+..|++..... +.+...|..+..+|...|++++|...+++.++.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45667778888888999999999999888743 3367788888889999999999999999988764 456788888999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCh-hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 037695 558 RYCQVGRVEDLLKLLEKMLSKQKCR-TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLA 636 (701)
Q Consensus 558 ~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 636 (701)
++...|++++|...|++++...|+. ..+...+....+. .++... ..........+......+... ..|++++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 9999999999999999988876642 1221222222211 111111 122223344555555555443 36889999
Q ss_pred HHHHHHHHhCCCCCCH-hhHHHHHHHHHhc-CCHHHHHHHHHHHHHcC
Q 037695 637 YKVACRMFNRNLIPDL-KLCKKVSERLILE-GKSEEADTLMLRFVERG 682 (701)
Q Consensus 637 ~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~ 682 (701)
++.++++.+ ..|+. .....+...+.+. +++++|..+|.++.+..
T Consensus 155 ~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 155 LEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 999988887 56664 4444444445554 77889999998887643
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.75 E-value=3.4e-07 Score=80.66 Aligned_cols=128 Identities=11% Similarity=0.025 Sum_probs=87.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHh
Q 037695 516 TYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCS 594 (701)
Q Consensus 516 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~ 594 (701)
.+..+...+...|++++|...|++..... +.+..++..+..++...|++++|...+++++...|. ..++..++.++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45556666677777777777777776643 445667777777777777777777777777777666 5667777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCChhhHHHHHHHHHh
Q 037695 595 FGYLEEAGKILGKVLRTASKADASTCHV--LVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
.|++++|...++++++..+. +...+.. ++..+...|++++|+..+.+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 77888888777777776533 4444433 33336677777777777765543
No 135
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.75 E-value=3.8e-06 Score=81.84 Aligned_cols=184 Identities=10% Similarity=-0.001 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 037695 495 LEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNG--RVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGR-VEDLLKL 571 (701)
Q Consensus 495 ~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~ 571 (701)
+++++.+++.+.... +.+..+|+.-..++...+ .+++++.+++.+.+.. +-|..+|+.-..++...|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 567777777776643 346667776666666666 3778888888887764 4566777766666777777 5788888
Q ss_pred HHHHHhcCCC-hhHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc------
Q 037695 572 LEKMLSKQKC-RTAYNQVIENLCSF--------------GYLEEAGKILGKVLRTASKADASTCHVLVESYLNK------ 630 (701)
Q Consensus 572 ~~~~~~~~p~-~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 630 (701)
+++++..+|. ..+|+.....+... +.+++++..+.+++...+. |...|+.+-..+...
T Consensus 168 ~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 168 TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence 8888877777 56676666665544 4577888888888877644 777777666665555
Q ss_pred -----CChhhHHHHHHHHHhCCCCCCHhhHHHHHHHH-----HhcCCHHHHHHHHHHHHHcCCC
Q 037695 631 -----GIPLLAYKVACRMFNRNLIPDLKLCKKVSERL-----ILEGKSEEADTLMLRFVERGHI 684 (701)
Q Consensus 631 -----g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~ 684 (701)
+.++++++.+.++.+ ..|+. .+..+..++ ...|..+++..++.++++..|.
T Consensus 247 ~~~~~~~l~~el~~~~elle--~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQE--LEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHH--HCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred chHHHHHHHHHHHHHHHHHh--hCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 346788888888888 66664 222222222 2467788888888888887763
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.74 E-value=1.9e-07 Score=93.20 Aligned_cols=126 Identities=13% Similarity=0.015 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCh----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCR----------------TAYNQVIENLCSFGYLEEAGKILGKVLRTASK 614 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 614 (701)
.+..+...|.+.|++++|+..|++++...|.. .++..++.+|.+.|++++|+..++++++..+.
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34444444444455555555555444444432 45555555555566666666666665555422
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 037695 615 ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEA-DTLMLRFV 679 (701)
Q Consensus 615 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 679 (701)
+...+..++.+|...|++++|+..|+++++ +.|+ ...+..++.++.+.|++++| ...|++|.
T Consensus 229 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 229 -NEKGLSRRGEAHLAVNDFELARADFQKVLQ--LYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555566666666666666666555 3332 34555555555555655555 33444444
No 137
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.74 E-value=1.9e-06 Score=84.17 Aligned_cols=165 Identities=11% Similarity=0.011 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--HH
Q 037695 481 NFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDT-----VTYTTIIDALSKNGRVEEATELMMKMLSKG---LVPT--VV 550 (701)
Q Consensus 481 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~p~--~~ 550 (701)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+++..... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445667778888999998888887764322111 223445566778889999999999887642 1222 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH---hcCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----C-CH
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKML---SKQKC-----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK----A-DA 617 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~-~~ 617 (701)
+|+.+...|...|++++|..++++++ ...|. ..++..++..|...|++++|+..++++++.... . -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888999999999999999999988 33443 157888999999999999999999998765311 1 16
Q ss_pred HHHHHHHHHHHhcCChhhH-HHHHHHHHh
Q 037695 618 STCHVLVESYLNKGIPLLA-YKVACRMFN 645 (701)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 645 (701)
.++..++..|...|++++| ...++++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 7788999999999999999 777887765
No 138
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.73 E-value=5e-08 Score=84.26 Aligned_cols=97 Identities=11% Similarity=-0.038 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037695 548 TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES 626 (701)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 626 (701)
+...+..+...+.+.|++++|+..|++++...|. ...+..++.+|...|++++|+..|+++++..+. ++..+..++.+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~ 98 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAEC 98 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHH
Confidence 4556666777788888888888888888887776 667778888888888888888888888877643 66777788888
Q ss_pred HHhcCChhhHHHHHHHHHh
Q 037695 627 YLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~ 645 (701)
|...|++++|+..|+++++
T Consensus 99 ~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 99 LLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888888877
No 139
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.72 E-value=2.7e-07 Score=77.79 Aligned_cols=116 Identities=8% Similarity=-0.033 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037695 548 TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES 626 (701)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 626 (701)
+...+..+...+...|++++|...|+++....|. ..++..++.++...|++++|...++++++..+ .+...+..++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP-TFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CchHHHHHHHHH
Confidence 3555666666666666666666666666666554 55666666666666666666666666666542 255666666666
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcC
Q 037695 627 YLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEG 666 (701)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 666 (701)
|...|++++|+..++++.+ ..|+ ...+..++.++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD--LDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhc
Confidence 6666777777776666666 3333 244555555555444
No 140
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.72 E-value=2e-07 Score=78.02 Aligned_cols=94 Identities=7% Similarity=-0.013 Sum_probs=42.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC--------HhhHHH
Q 037695 586 NQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD--------LKLCKK 657 (701)
Q Consensus 586 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--------~~~~~~ 657 (701)
..++..+.+.|++++|+..|+++++..+. +...|..++.+|...|++++|+..++++++ +.|+ ..++..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVE--VGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHH--hCcccchhhHHHHHHHHH
Confidence 33444444444444444444444444322 344444444444444444444444444444 1111 123444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 658 VSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 658 l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
++.++...|++++|++.|+++++..
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5555555555555555555555443
No 141
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.70 E-value=6.4e-07 Score=74.29 Aligned_cols=95 Identities=16% Similarity=0.161 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695 550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYL 628 (701)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 628 (701)
..+..+...+...|++++|.++++++....|. ..++..++..+...|++++|..+++++++.. +.+...+..++..|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 34444555555555555555555555554443 4444555555555555555555555555443 224445555555555
Q ss_pred hcCChhhHHHHHHHHHh
Q 037695 629 NKGIPLLAYKVACRMFN 645 (701)
Q Consensus 629 ~~g~~~~A~~~~~~~~~ 645 (701)
..|++++|...++++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555555555
No 142
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.69 E-value=1.3e-07 Score=84.72 Aligned_cols=118 Identities=8% Similarity=0.053 Sum_probs=77.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH-HHhcCCH--HHH
Q 037695 526 KNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIEN-LCSFGYL--EEA 601 (701)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~--~~A 601 (701)
..|++++|...+++..... +.+...+..+...|...|++++|...|+++.+..|. ...+..++.+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4566666777776666543 445666777777777777777777777777766665 5566666666 5566776 777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 602 GKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
...++++++..+ .+...+..++..|...|++++|+..++++++
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 777777776653 2566667777777777777777777777777
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.69 E-value=4.2e-07 Score=76.17 Aligned_cols=117 Identities=7% Similarity=-0.039 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695 549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESY 627 (701)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 627 (701)
...+..+...+...|++++|...++++....|. ...+..++.++...|++++|...+.++++..+ .+...+..++..|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP-AYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc-cCHHHHHHHHHHH
Confidence 334445555555555555555555555555544 44555555555555666666666655555432 2455555555556
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 037695 628 LNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGK 667 (701)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 667 (701)
...|++++|+..++++.+.+.. +...+..++.++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence 6666666666666655552211 23444455555555444
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.69 E-value=1.7e-07 Score=78.39 Aligned_cols=108 Identities=17% Similarity=0.105 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHHHH
Q 037695 549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK--AD----ASTCH 621 (701)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~ 621 (701)
..++..+...+.+.|++++|+..|+++++..|. ..++..++.+|...|++++|+..++++++..+. ++ ..+|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456788999999999999999999999999998 788999999999999999999999999886432 12 24678
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHH
Q 037695 622 VLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKV 658 (701)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 658 (701)
.++.++...|++++|++.|++.+. ..|+......+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l 122 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKV 122 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHH
Confidence 889999999999999999999998 56676555443
No 145
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.67 E-value=6.7e-07 Score=74.88 Aligned_cols=118 Identities=16% Similarity=0.093 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHH
Q 037695 514 TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENL 592 (701)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~ 592 (701)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++....|. ...+..++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 3456666667777777777777777776653 445667777777777788888888888877777666 56777777778
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 037695 593 CSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP 633 (701)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 633 (701)
...|++++|...++++++..+ .+...+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 888888888888888777653 3566677777777766654
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=9.5e-07 Score=73.22 Aligned_cols=113 Identities=18% Similarity=0.192 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHH
Q 037695 515 VTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLC 593 (701)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~ 593 (701)
..+..+...+...|++++|..+++++.... +.+..++..+...+...|++++|..+++++....|. ..++..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 445555556666666666666666665542 334555666666666666666666666666665554 455566666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 594 SFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN 629 (701)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 629 (701)
..|++++|...++++++..+ .+...+..+...+..
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHh
Confidence 66666666666666665542 244445455444433
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.66 E-value=5.1e-07 Score=76.02 Aligned_cols=117 Identities=11% Similarity=0.060 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q 037695 513 DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIEN 591 (701)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 591 (701)
+...+..+...+...|++++|...|++..... +.+..++..+...+...|++++|+..++++....|. ...+..++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34556666667777777777777777766643 345666677777777777777777777777776665 5666677777
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 037695 592 LCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKG 631 (701)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 631 (701)
+...|++++|...++++++..+. +...+..+..++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhc
Confidence 77777777777777777665432 3455555555555544
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.65 E-value=3.6e-07 Score=76.36 Aligned_cols=95 Identities=11% Similarity=-0.015 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695 550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYL 628 (701)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 628 (701)
..+..+...+.+.|++++|+..|++++...|. ...+..++.+|...|++++|+..++++++..+. +...+..++.+|.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence 34455555555566666666666665555554 455555555555555566665555555554422 4555555555555
Q ss_pred hcCChhhHHHHHHHHHh
Q 037695 629 NKGIPLLAYKVACRMFN 645 (701)
Q Consensus 629 ~~g~~~~A~~~~~~~~~ 645 (701)
..|++++|+..++++++
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555555
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.65 E-value=5.9e-07 Score=75.01 Aligned_cols=97 Identities=9% Similarity=-0.056 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHH
Q 037695 583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSER 661 (701)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 661 (701)
..+..++..+...|++++|+..|+++++..+. ++..|..++.+|...|++++|+..++++++ +.|+ ...+..++.+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE--KDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCcHHHHHHHHHH
Confidence 34555666666677777777777776665432 566666667777777777777777777666 3333 4566666667
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 037695 662 LILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~ 682 (701)
+...|++++|+..|+++++..
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhC
Confidence 777777777777777776666
No 150
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.64 E-value=1.5e-05 Score=78.00 Aligned_cols=220 Identities=12% Similarity=0.012 Sum_probs=157.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHH
Q 037695 422 EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREG-KMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQK-G-DLEEA 498 (701)
Q Consensus 422 ~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-g-~~~~A 498 (701)
.+..++|+.+++.++... +-+..+|+.--..+...| .+++++.++..++... +-+..+|+.-...+.+. + +++++
T Consensus 67 ~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred CCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 344567888888877764 445566666666666677 4888888888887763 44677777766666665 6 78888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC------
Q 037695 499 LSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVE--------EATELMMKMLSKGLVPTVVTYRTVIHRYCQVGR------ 564 (701)
Q Consensus 499 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------ 564 (701)
+.+++.+.+.. +.+...|+.-..++.+.|.++ ++++.++++++.. +-|...|+.....+.+.+.
T Consensus 145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 88888887653 446677776666665555555 8899999998875 5578888888877777776
Q ss_pred -HHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----CCCCH
Q 037695 565 -VEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYL--------------------EEAGKILGKVLRTA-----SKADA 617 (701)
Q Consensus 565 -~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~~~ 617 (701)
++++++++++++...|. ..+|+.+...+.+.|+. ........++.... ..+++
T Consensus 223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 78999999999999888 67888877777776653 23333333333221 13578
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 618 STCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 618 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
..+.-|+..|...|+.++|.++++.+.+
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 8888999999999999999999999875
No 151
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.62 E-value=1.7e-07 Score=80.29 Aligned_cols=118 Identities=14% Similarity=0.010 Sum_probs=79.1
Q ss_pred HHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 037695 571 LLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI 649 (701)
Q Consensus 571 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 649 (701)
.|++++...|. ...+..++..+...|++++|+..|++++...+ .++..|..++.+|...|++++|+..+++++..++.
T Consensus 6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 34444555554 45566677777777777777777777777653 36777777777777777777777777777773322
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHH
Q 037695 650 PDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEE 690 (701)
Q Consensus 650 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 690 (701)
+...+..++.+|...|++++|+..|+++++..|..|....
T Consensus 85 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 -EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp -CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred -CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 3356667777777777777777777777777765554433
No 152
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.61 E-value=5.4e-07 Score=82.50 Aligned_cols=154 Identities=14% Similarity=-0.017 Sum_probs=94.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCH
Q 037695 491 QKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSK----GLV-PTVVTYRTVIHRYCQVGRV 565 (701)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~-p~~~~~~~l~~~~~~~g~~ 565 (701)
..|++++|.+.++.+.. ........+..+...|...|++++|...+++.... +.. ....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45666666664444332 11123455666666667777777777777666551 111 1244566677777777888
Q ss_pred HHHHHHHHHHHhc---CC-C----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC
Q 037695 566 EDLLKLLEKMLSK---QK-C----RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS-KAD----ASTCHVLVESYLNKGI 632 (701)
Q Consensus 566 ~~A~~~~~~~~~~---~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~ 632 (701)
++|...+++.... .+ . ..++..++..+...|++++|...++++++... ..+ ..++..++..+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8887777776665 23 2 23566777777788888888888877764311 112 2335677778888888
Q ss_pred hhhHHHHHHHHHh
Q 037695 633 PLLAYKVACRMFN 645 (701)
Q Consensus 633 ~~~A~~~~~~~~~ 645 (701)
+++|...++++.+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877766
No 153
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.61 E-value=9.1e-07 Score=88.24 Aligned_cols=96 Identities=14% Similarity=0.050 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695 549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESY 627 (701)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 627 (701)
..+|..+..+|.+.|++++|+..++++++..|. ..++..++.+|...|++++|+..|+++++..+. +...+..+..++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~ 274 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 356666777777777777777777777777666 566777777777777777777777777776533 566667777777
Q ss_pred HhcCChhhH-HHHHHHHHh
Q 037695 628 LNKGIPLLA-YKVACRMFN 645 (701)
Q Consensus 628 ~~~g~~~~A-~~~~~~~~~ 645 (701)
...|++++| ...+++|+.
T Consensus 275 ~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777777766 345555544
No 154
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.58 E-value=8.2e-07 Score=81.07 Aligned_cols=128 Identities=10% Similarity=0.035 Sum_probs=70.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-h----------------hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-R----------------TAYNQVIENLCSFGYLEEAGKILGKVLRTASK 614 (701)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 614 (701)
+..+...+...|++++|+..|++++...|. + .++..++.+|...|++++|+..++++++..+
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p- 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK- 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-
Confidence 444444455555555555555555544333 1 4556666667777777777777777766542
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCCHHHHH-HHHHHHHHcC
Q 037695 615 ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLILEGKSEEAD-TLMLRFVERG 682 (701)
Q Consensus 615 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~ 682 (701)
.+...+..++.+|...|++++|+..++++++ +.| +..++..+..++...++.+++. ..+.++..++
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3566666777777777777777777777766 333 3456666666666666666665 5555555544
No 155
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.57 E-value=7e-07 Score=72.40 Aligned_cols=102 Identities=16% Similarity=0.055 Sum_probs=71.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HhhHHHH
Q 037695 582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD---LKLCKKV 658 (701)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 658 (701)
...+..++..+...|++++|...++++++..+ .+...+..++..+...|++++|+..++++++ ..|+ ...+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~l 82 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWAAK 82 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHHHH
Confidence 44556667777777777777777777776543 3566677777777777777777777777777 3443 4667777
Q ss_pred HHHHHhc-CCHHHHHHHHHHHHHcCCCCC
Q 037695 659 SERLILE-GKSEEADTLMLRFVERGHIQP 686 (701)
Q Consensus 659 ~~~~~~~-g~~~~A~~~~~~~~~~~~~~~ 686 (701)
+.++... |++++|.++++++.+..+..+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 7777777 888888888887777776443
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.57 E-value=1.3e-06 Score=76.95 Aligned_cols=102 Identities=9% Similarity=-0.099 Sum_probs=87.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037695 548 TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES 626 (701)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 626 (701)
+...+..+...+.+.|++++|+..|++++...|. ...+..++.+|...|++++|+..++++++..+. +...|..++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 4667888888899999999999999999988886 778888999999999999999999999887644 68888899999
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695 627 YLNKGIPLLAYKVACRMFNRNLIPDL 652 (701)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~~~~p~~ 652 (701)
|...|++++|+..++++++ +.|+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~--~~p~~ 112 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIE--AEGNG 112 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HHSSS
T ss_pred HHHccCHHHHHHHHHHHHH--hCCCc
Confidence 9999999999999999988 44443
No 157
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.56 E-value=1.5e-06 Score=82.12 Aligned_cols=123 Identities=11% Similarity=0.021 Sum_probs=52.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---hhHHHHHHHHHHhcCC
Q 037695 521 IDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC---RTAYNQVIENLCSFGY 597 (701)
Q Consensus 521 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~ 597 (701)
...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+......+. ..++..++.++...|+
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCC
Confidence 334444445555555444444322 22223333333444455555555555433322100 1234444444555555
Q ss_pred HHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 598 LEEAGKILGKVLRTASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 598 ~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+++|+..|+++......|. .......+.++.+.|+.++|...|+++..
T Consensus 187 ~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555555555443221121 22333444444555555555555555544
No 158
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.55 E-value=1e-06 Score=74.69 Aligned_cols=98 Identities=10% Similarity=0.020 Sum_probs=65.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 037695 547 PTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVE 625 (701)
Q Consensus 547 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 625 (701)
.+...+..+...+...|++++|...|++++...|. ..++..++.++...|++++|...++++++..+. +...+..++.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 85 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 85 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHH
Confidence 34566666666666777777777777776666665 556666666666777777777777776665533 5666666666
Q ss_pred HHHhcCChhhHHHHHHHHHh
Q 037695 626 SYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 626 ~~~~~g~~~~A~~~~~~~~~ 645 (701)
+|...|++++|+..++++++
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 77777777777777766665
No 159
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.55 E-value=2.9e-06 Score=69.36 Aligned_cols=94 Identities=10% Similarity=-0.030 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN 629 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 629 (701)
.+..+...+...|++++|...++++....|. ...+..++.++...|++++|...++++++..+ .+...+..++.++..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHH
Confidence 3444444455555555555555555544443 34444445555555555555555555544432 234444444445555
Q ss_pred cCChhhHHHHHHHHHh
Q 037695 630 KGIPLLAYKVACRMFN 645 (701)
Q Consensus 630 ~g~~~~A~~~~~~~~~ 645 (701)
.|++++|...++++.+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555555444
No 160
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.54 E-value=7.9e-05 Score=72.60 Aligned_cols=197 Identities=7% Similarity=-0.001 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 037695 460 MDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKG--DLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGR-VEEATEL 536 (701)
Q Consensus 460 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~-~~~A~~~ 536 (701)
++++..++..+.... +-+..+|+.-...+.+.+ .+++++.+++.+.+.. +.|...|+.-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 566777777776652 446677776666666666 4788888888887754 4467777777777777777 5888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhc------
Q 037695 537 MMKMLSKGLVPTVVTYRTVIHRYCQV--------------GRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSF------ 595 (701)
Q Consensus 537 ~~~m~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~------ 595 (701)
++.+++.. +-|...|+.....+.+. +.++++++++.+++...|. ..+|+.+-..+.+.
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 88888765 55677777666665554 4578999999999998888 67777776666655
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHHH
Q 037695 596 -----GYLEEAGKILGKVLRTASKADASTCHVLVES---YLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSERL 662 (701)
Q Consensus 596 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~ 662 (701)
+.++++++.++++++..+. +..++..++.. ....|..+++...+.++.+ +.|-. .-|..+...+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKF 319 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHHHHHH
Confidence 4688999999999987654 44444333322 1235677788889999988 55543 4455544443
No 161
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.54 E-value=6.3e-07 Score=74.15 Aligned_cols=95 Identities=13% Similarity=0.016 Sum_probs=50.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHHHHHh
Q 037695 586 NQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSERLIL 664 (701)
Q Consensus 586 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 664 (701)
..++..+.+.|++++|+..++++++..+. +...|..++.++...|++++|+..++++++ +.| +...+..++.+|..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARM--LDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 34445555555555555555555554422 455555555555555566666655555555 333 23455555555666
Q ss_pred cCCHHHHHHHHHHHHHcCC
Q 037695 665 EGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 665 ~g~~~~A~~~~~~~~~~~~ 683 (701)
.|++++|+..++++++..|
T Consensus 98 ~g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCc
Confidence 6666666666666555544
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.54 E-value=2.1e-07 Score=90.37 Aligned_cols=165 Identities=13% Similarity=0.012 Sum_probs=119.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q 037695 513 DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIEN 591 (701)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 591 (701)
+...+..+...+...|++++|+..|++.+... +.+...|..+..+|.+.|++++|+..++++++..|. ..++..++.+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45677888899999999999999999999864 457888999999999999999999999999999888 7788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHH
Q 037695 592 LCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEA 671 (701)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 671 (701)
|...|++++|...|+++++..+. +...+...++.....+ .+... .........++..+...+... ..|++++|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A 154 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRIA---KKKRW-NSIEERRIHQESELHSYLTRL--IAAERERE 154 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHHH---HHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHHH---HHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence 99999999999999999876432 1111112222222211 11111 122222233344555555433 37899999
Q ss_pred HHHHHHHHHcCCCC
Q 037695 672 DTLMLRFVERGHIQ 685 (701)
Q Consensus 672 ~~~~~~~~~~~~~~ 685 (701)
++.++++.+..+..
T Consensus 155 ~~~~~~al~~~p~~ 168 (281)
T 2c2l_A 155 LEECQRNHEGHEDD 168 (281)
T ss_dssp HTTTSGGGTTTSCH
T ss_pred HHHHHhhhccccch
Confidence 99999888876543
No 163
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.51 E-value=8.8e-07 Score=73.26 Aligned_cols=93 Identities=12% Similarity=-0.082 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 037695 552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNK 630 (701)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 630 (701)
+..+...+.+.|++++|+..|+++++..|. ...+..++.++...|++++|+..++++++..+. +...+..++.+|...
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 444556677777777777777777777776 667777777777777777777777777776543 566777777777777
Q ss_pred CChhhHHHHHHHHHh
Q 037695 631 GIPLLAYKVACRMFN 645 (701)
Q Consensus 631 g~~~~A~~~~~~~~~ 645 (701)
|++++|+..++++++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 777777777777776
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.51 E-value=1.9e-06 Score=75.77 Aligned_cols=100 Identities=12% Similarity=0.052 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q 037695 513 DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIEN 591 (701)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 591 (701)
+...+..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++++...|. ..++..++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 34567777778888888888888888887753 446777888888888888888888888888888777 6777888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC
Q 037695 592 LCSFGYLEEAGKILGKVLRTAS 613 (701)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~~~~ 613 (701)
|...|++++|+..|+++++..+
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHccCHHHHHHHHHHHHHhCC
Confidence 8888888888888888877654
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.50 E-value=1.7e-06 Score=73.27 Aligned_cols=101 Identities=14% Similarity=-0.008 Sum_probs=91.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 037695 582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSER 661 (701)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 661 (701)
...+..++..+...|++++|+..|.++++..+. +...+..++.+|...|++++|+..++++++.+.. +...+..++.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 678889999999999999999999999998644 7889999999999999999999999999994433 46888899999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCC
Q 037695 662 LILEGKSEEADTLMLRFVERGHI 684 (701)
Q Consensus 662 ~~~~g~~~~A~~~~~~~~~~~~~ 684 (701)
|...|++++|+..|+++++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999988765
No 166
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.50 E-value=4.4e-06 Score=68.28 Aligned_cols=109 Identities=13% Similarity=0.098 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHH
Q 037695 514 TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENL 592 (701)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~ 592 (701)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++....|. ...+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3445556666667777777777777766643 345666667777777777777777777777776665 56667777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695 593 CSFGYLEEAGKILGKVLRTASKADASTCHVLV 624 (701)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 624 (701)
...|++++|...++++++..+. +...+..+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~ 113 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEAN-NPQLKEGLQ 113 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence 7777777777777777665432 444444433
No 167
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.49 E-value=1.1e-06 Score=73.58 Aligned_cols=95 Identities=12% Similarity=0.058 Sum_probs=52.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHHHHHH
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK--AD----ASTCHVL 623 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~l 623 (701)
.+..+...+...|++++|...|+++....|. ...+..++.++...|++++|...++++++..+. ++ ..++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4445555555566666666666655555544 445555555555566666666666555544321 11 4455555
Q ss_pred HHHHHhcCChhhHHHHHHHHHh
Q 037695 624 VESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+.+|...|++++|+..++++.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 5566666666666666666655
No 168
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.47 E-value=2.8e-06 Score=77.48 Aligned_cols=127 Identities=16% Similarity=0.045 Sum_probs=80.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 037695 517 YTTIIDALSKNGRVEEATELMMKMLSKGLVPT----------------VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK 580 (701)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 580 (701)
+..+...+...|++++|...|.+.+... +.+ ..++..+..+|.+.|++++|+..+++++...|
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 4444445555555555555555555431 111 25677777788888888888888888888777
Q ss_pred C-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH-HHHHHHHh
Q 037695 581 C-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAY-KVACRMFN 645 (701)
Q Consensus 581 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 645 (701)
. ..++..++.+|...|++++|...|+++++..+. +...+..+..++...|+..++. ..+..+..
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHC-----------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6 667778888888888888888888888876533 6677777777777777666665 44555544
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=5.5e-06 Score=71.08 Aligned_cols=96 Identities=11% Similarity=-0.009 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695 549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLV 624 (701)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 624 (701)
...+..+...+...|++++|...|++++...|. ...+..++.+|...|++++|+..++++++..+ .+...+..++
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a 106 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-GDVKALYRRS 106 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-cCHHHHHHHH
Confidence 444445555555555555555555555555444 23444445555555555555555555544432 1344444455
Q ss_pred HHHHhcCChhhHHHHHHHHHh
Q 037695 625 ESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~ 645 (701)
.+|...|++++|+..++++++
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555544
No 170
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.46 E-value=2e-06 Score=75.08 Aligned_cols=132 Identities=18% Similarity=0.155 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HH
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK-AD----AS 618 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~ 618 (701)
++..+...+...|++++|+..+++++...+. ..++..++..+...|++++|...++++++.... .+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555556666666666666666666554221 135566677777777777777777766543211 11 34
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHhC----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 619 TCHVLVESYLNKGIPLLAYKVACRMFNR----NLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 619 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
++..++..+...|++++|+..++++.+. +..+. ...+..++..+...|++++|..+++++++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 5666777777888888888877777652 11111 2567778888888999999999998887654
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.44 E-value=2.7e-06 Score=71.14 Aligned_cols=91 Identities=15% Similarity=0.051 Sum_probs=47.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCh----hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHH
Q 037695 555 VIHRYCQVGRVEDLLKLLEKMLSKQKCR----TAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD--ASTCHVLVESYL 628 (701)
Q Consensus 555 l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 628 (701)
+...+...|++++|...|+++....|.. .++..++.++...|++++|...++++++..+... +..+..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 4445555566666666666555555542 2445555555555555555555555555432211 344445555555
Q ss_pred hcCChhhHHHHHHHHHh
Q 037695 629 NKGIPLLAYKVACRMFN 645 (701)
Q Consensus 629 ~~g~~~~A~~~~~~~~~ 645 (701)
..|++++|+..++++.+
T Consensus 88 ~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555555
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.43 E-value=2e-06 Score=89.75 Aligned_cols=87 Identities=14% Similarity=-0.039 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHH
Q 037695 583 TAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSER 661 (701)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~ 661 (701)
.+|..++.+|.+.|++++|+..++++++..+. +...|..++.+|...|++++|+..|+++++ +.|+. .++..++.+
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 34445555555555555555555555554422 444555555555555555555555555555 33322 444445555
Q ss_pred HHhcCCHHHHH
Q 037695 662 LILEGKSEEAD 672 (701)
Q Consensus 662 ~~~~g~~~~A~ 672 (701)
+.+.|++++|.
T Consensus 395 ~~~~~~~~~a~ 405 (457)
T 1kt0_A 395 QKKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555554444
No 173
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.41 E-value=1.8e-06 Score=73.55 Aligned_cols=97 Identities=19% Similarity=0.011 Sum_probs=65.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------C-----HHHHHHHHHHHHhcCChhhHHHHHHHHHhCCC-----
Q 037695 585 YNQVIENLCSFGYLEEAGKILGKVLRTASKA------D-----ASTCHVLVESYLNKGIPLLAYKVACRMFNRNL----- 648 (701)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----- 648 (701)
+...+..+.+.|++++|+..|+++++..+.. + ...|..++.++.+.|++++|+..+.++++ +
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~--l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH--YFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hhhccc
Confidence 3344555555566666666666555544331 2 23777777778888888888888877777 4
Q ss_pred --CCCH-hhH----HHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 649 --IPDL-KLC----KKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 649 --~p~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
.|+. ..| ...+.+|...|++++|+..|+++++..|
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 6664 566 7788888888888888888888877755
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.40 E-value=2.7e-06 Score=68.84 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 037695 549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA--DASTCHVLVE 625 (701)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 625 (701)
...+..+...+...|++++|...++++.+..|. ..++..++.++...|++++|...++++++.. +. +...+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 445566667777777777777777777777665 5667777777777788888888887777754 23 5667777777
Q ss_pred HHHhc-CChhhHHHHHHHHHhC
Q 037695 626 SYLNK-GIPLLAYKVACRMFNR 646 (701)
Q Consensus 626 ~~~~~-g~~~~A~~~~~~~~~~ 646 (701)
.|... |++++|++.++++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 78888 8888888888877773
No 175
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.40 E-value=6.3e-07 Score=89.44 Aligned_cols=155 Identities=10% Similarity=0.008 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHH
Q 037695 514 TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLC 593 (701)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~ 593 (701)
...+..+...+.+.|++++|...|++.+.. .|+... +...|+.+++...+. ..++..++.+|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~--------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK--------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH--------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH--------HHHHHHHHHHHH
Confidence 344566666677777777777777777663 233221 222333333332221 137888999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH-hhHHHHHHH-HHhcCCHHHH
Q 037695 594 SFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL-KLCKKVSER-LILEGKSEEA 671 (701)
Q Consensus 594 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~-~~~~g~~~~A 671 (701)
+.|++++|+..++++++..+ .+...|..++.+|...|++++|+..|+++++ +.|+. .++..+..+ ....+..+++
T Consensus 242 ~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEE-KNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998764 4788899999999999999999999999988 55554 555555554 3456778889
Q ss_pred HHHHHHHHHcCCCCCch
Q 037695 672 DTLMLRFVERGHIQPKS 688 (701)
Q Consensus 672 ~~~~~~~~~~~~~~~~~ 688 (701)
..+|.++++..+..++.
T Consensus 319 ~~~~~~~l~~~p~~~~~ 335 (338)
T 2if4_A 319 KEMYKGIFKGKDEGGAK 335 (338)
T ss_dssp -----------------
T ss_pred HHHHHHhhCCCCCCCCC
Confidence 99999999888765543
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.38 E-value=1.3e-05 Score=68.72 Aligned_cols=108 Identities=17% Similarity=0.060 Sum_probs=68.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHH
Q 037695 513 DTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQ 587 (701)
Q Consensus 513 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 587 (701)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|+..+++++...|. ...+..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 3455566666666666666666666666653 344 455666666677777777777777777666665 556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695 588 VIENLCSFGYLEEAGKILGKVLRTASKADASTCHVL 623 (701)
Q Consensus 588 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 623 (701)
++.+|...|++++|...++++++..+. +...+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 139 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPK-NKVFQEAL 139 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-CHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHH
Confidence 777777777777777777777665422 44444333
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.37 E-value=3.6e-06 Score=70.31 Aligned_cols=110 Identities=12% Similarity=0.052 Sum_probs=91.8
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCC--CC----HhhH
Q 037695 582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLI--PD----LKLC 655 (701)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~----~~~~ 655 (701)
...+..++..+...|++++|...++++++.. +.+...+..++..|...|++++|+..++++.+.... ++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 3567788999999999999999999999876 447888999999999999999999999999884321 12 6788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHHHHh
Q 037695 656 KKVSERLILEGKSEEADTLMLRFVERGHIQPKSEEHLQ 693 (701)
Q Consensus 656 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 693 (701)
..++.++...|++++|...|+++.+..+ .+.....+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~ 119 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 8899999999999999999999999876 444444443
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.37 E-value=9.5e-06 Score=67.71 Aligned_cols=104 Identities=17% Similarity=0.050 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC--HhhHHHHH
Q 037695 585 YNQVIENLCSFGYLEEAGKILGKVLRTASKADA---STCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD--LKLCKKVS 659 (701)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~l~ 659 (701)
+..++..+...|++++|...++++++..+. ++ ..+..++.+|...|++++|+..++++++..+... ...+..++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 344556666777777777777777665432 22 4556666777777777777777777766332211 34566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCchH
Q 037695 660 ERLILEGKSEEADTLMLRFVERGHIQPKSE 689 (701)
Q Consensus 660 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 689 (701)
.++...|++++|+.+|+++++..|..+...
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 777777777777777777777666544433
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.36 E-value=2.4e-06 Score=74.95 Aligned_cols=96 Identities=11% Similarity=0.073 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------------------CCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 549 VVTYRTVIHRYCQVGRVEDLLKLLEKMLSK------------------QKC-RTAYNQVIENLCSFGYLEEAGKILGKVL 609 (701)
Q Consensus 549 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 609 (701)
...+......+.+.|++++|+..|.+++.. .|. ..++..++.+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445666667777777777777777777665 222 3455566666666666666666666666
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 610 RTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 610 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+..+ .++..|..++.+|...|++++|+..++++++
T Consensus 91 ~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 91 KREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 6542 2555666666666666666666666666666
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.36 E-value=5.9e-06 Score=72.40 Aligned_cols=98 Identities=15% Similarity=0.144 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695 515 VTYTTIIDALSKNGRVEEATELMMKMLSK--------G---------LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLS 577 (701)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------~---------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 577 (701)
..+......+.+.|++++|+..|.+.+.. . -+.+...|..+..+|.+.|++++|+..+++++.
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45566666777777777777777776653 0 011234566666777777777777777777777
Q ss_pred cCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 578 KQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTA 612 (701)
Q Consensus 578 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (701)
..|. ..++..++.+|...|++++|...|+++++..
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 7666 5667777777777777777777777777664
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.36 E-value=4.6e-07 Score=74.55 Aligned_cols=83 Identities=12% Similarity=0.128 Sum_probs=55.7
Q ss_pred cCCHHHHHHHHHHHHhcC---CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 037695 562 VGRVEDLLKLLEKMLSKQ---KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAY 637 (701)
Q Consensus 562 ~g~~~~A~~~~~~~~~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 637 (701)
.|++++|+..|+++++.+ |. ..++..++.+|...|++++|+..++++++..+. ++..+..++.+|...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 467777777777777763 44 456667777777777777777777777776533 5666677777777777777777
Q ss_pred HHHHHHHh
Q 037695 638 KVACRMFN 645 (701)
Q Consensus 638 ~~~~~~~~ 645 (701)
..+++++.
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777766
No 182
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.34 E-value=2.7e-06 Score=89.21 Aligned_cols=116 Identities=12% Similarity=0.042 Sum_probs=57.7
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHH
Q 037695 524 LSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAG 602 (701)
Q Consensus 524 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~ 602 (701)
+.+.|++++|...|++.++.. +.+..+|..+..+|.+.|++++|++.++++++..|. ..++..++.+|...|++++|+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 344555555555555555432 233555555555555555555555555555555554 445555555555555555555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhhHHHHHH
Q 037695 603 KILGKVLRTASKADASTCHVLVES--YLNKGIPLLAYKVAC 641 (701)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 641 (701)
..++++++..+. +...+..+..+ +.+.|++++|++.++
T Consensus 95 ~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 555555554322 22233333333 555555555555555
No 183
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.33 E-value=2.5e-05 Score=81.05 Aligned_cols=195 Identities=12% Similarity=-0.001 Sum_probs=102.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 037695 451 IQSLCREGKMDGAKKFMQECLNKGCAVNV----------------VNFTSLIRGFCQKGDLEEALSLLDDMYLCK-KDPD 513 (701)
Q Consensus 451 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p~ 513 (701)
...+.+.|++++|...|..+.+....... ..+..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34556677777777777777665322110 124556666667777777776666654311 0111
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----
Q 037695 514 T----VTYTTIIDALSKNGRVEEATELMMKMLSK----GLVPT-VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ----- 579 (701)
Q Consensus 514 ~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----- 579 (701)
. .+.+.+...+...|+++.|..++...... +..+. ..++..++..|...|++++|..+++++....
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 11222233333456666666666655431 21222 3455556666666666666666666554431
Q ss_pred -CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 580 -KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS---KAD---ASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 580 -p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+. ..++..++..|...|++++|..++++++.... .|. ...+..++..+...|++++|...+.++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 33555566666666666666666666543311 111 12344445555556666666666655555
No 184
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.31 E-value=1.1e-06 Score=92.15 Aligned_cols=120 Identities=12% Similarity=-0.020 Sum_probs=100.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 037695 554 TVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI 632 (701)
Q Consensus 554 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 632 (701)
.+...+.+.|++++|++.|+++++..|. ..++..++.+|.+.|++++|+..++++++..+ .+...+..++.+|...|+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 3445567889999999999999999988 78999999999999999999999999999864 478899999999999999
Q ss_pred hhhHHHHHHHHHhCCCCCC-HhhHHHHHHH--HHhcCCHHHHHHHHH
Q 037695 633 PLLAYKVACRMFNRNLIPD-LKLCKKVSER--LILEGKSEEADTLML 676 (701)
Q Consensus 633 ~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~ 676 (701)
+++|++.++++++ +.|+ ...+..++.+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVK--VKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH--HSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999 4443 3556666666 888999999999998
No 185
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.29 E-value=7.6e-06 Score=82.51 Aligned_cols=89 Identities=6% Similarity=-0.084 Sum_probs=66.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHhhHHHHHH
Q 037695 582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP-DLKLCKKVSE 660 (701)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 660 (701)
..++..++.+|.+.|++++|+..++++++..+ .+...+..++.+|...|++++|+..++++++ +.| +..++..+..
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~--l~P~~~~~~~~l~~ 349 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQE--IAPEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 45677788888888888888888888887653 3677778888888888888888888888887 444 3466666777
Q ss_pred HHHhcCCHHHHHH
Q 037695 661 RLILEGKSEEADT 673 (701)
Q Consensus 661 ~~~~~g~~~~A~~ 673 (701)
++...++.+++..
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666654
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.28 E-value=4.5e-06 Score=71.03 Aligned_cols=93 Identities=11% Similarity=0.010 Sum_probs=69.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------
Q 037695 552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-------------RTAYNQVIENLCSFGYLEEAGKILGKVLRT------- 611 (701)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------- 611 (701)
+......+.+.|++++|+..|+++++..|+ ...|..++.++.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 444555666677777777777777766665 126777888888888888888888888876
Q ss_pred CCCCCHHHH----HHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 612 ASKADASTC----HVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 612 ~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
.+. +...| ...+.++...|++++|+..|+++++
T Consensus 94 ~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 532 56677 8888888888888888888888877
No 187
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.27 E-value=4.6e-05 Score=81.31 Aligned_cols=160 Identities=11% Similarity=-0.027 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcC-
Q 037695 529 RVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGR----------VEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFG- 596 (701)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g- 596 (701)
..++|++.+++++... +-+..+|+.-..++...|+ ++++++++++++..+|. ..+|..-..++.+.|
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 3567788888888754 3445666666666666666 88999999999998888 778888888888888
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---------
Q 037695 597 -YLEEAGKILGKVLRTASKADASTCHVLVESYLNKG-IPLLAYKVACRMFNRNLIPDLKLCKKVSERLILE--------- 665 (701)
Q Consensus 597 -~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------- 665 (701)
++++++..++++++..++ +..+|+.-.+.+...| .++++++.+.++.+.++. +...|...+..+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 779999999999998755 8888988888888888 888999999999885554 567888877777663
Q ss_pred -----CCHHHHHHHHHHHHHcCCCCCchHHH
Q 037695 666 -----GKSEEADTLMLRFVERGHIQPKSEEH 691 (701)
Q Consensus 666 -----g~~~~A~~~~~~~~~~~~~~~~~~~~ 691 (701)
+.+++|++++.++++..|..++.=..
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y 231 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPNDQSAWFY 231 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhCCCCccHHHH
Confidence 56899999999999998866554433
No 188
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.25 E-value=6.1e-05 Score=78.10 Aligned_cols=197 Identities=9% Similarity=-0.021 Sum_probs=111.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCC
Q 037695 381 LNGLCHNGKSLEAREMINTSEEEWWTPNA----------------ITYSVVMHGLRREGKLSEACDVVREMVKKG-FFPT 443 (701)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~-~~~~ 443 (701)
...+.+.|++++|.+.|..+.+....... ..+..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 44567778888888888888775422111 125567777777777777777777665431 1112
Q ss_pred HH----HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC--
Q 037695 444 PV----EINLLIQSLCREGKMDGAKKFMQECLNK----GCAV-NVVNFTSLIRGFCQKGDLEEALSLLDDMYLC--KK-- 510 (701)
Q Consensus 444 ~~----~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~-- 510 (701)
.. +.+.+-..+...|+++.+..++...... +..+ -..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 1222222333456777777777665432 1111 2345566667777777777777777765531 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 037695 511 DP-DTVTYTTIIDALSKNGRVEEATELMMKMLSK--GLVPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLS 577 (701)
Q Consensus 511 ~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 577 (701)
.+ ...++..++..|...|++++|..++++.... .+..+ ...+..+...+...|++++|...|.++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 1335666667777777777777777665542 11111 23344555556666777777766666654
No 189
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.24 E-value=5.7e-06 Score=72.10 Aligned_cols=129 Identities=16% Similarity=0.110 Sum_probs=74.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---C----hhH
Q 037695 517 YTTIIDALSKNGRVEEATELMMKMLSKGL-VPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQK---C----RTA 584 (701)
Q Consensus 517 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p---~----~~~ 584 (701)
+..+...|...|++++|...+++...... .++ ..++..+...+...|++++|...++++....+ + ..+
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 44444455555555555555554443200 011 13455566666666777777666666554321 1 234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C----CCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 585 YNQVIENLCSFGYLEEAGKILGKVLRTAS-K----ADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+..++..+...|++++|...++++++... . ....++..++..|...|++++|+..++++.+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55666777777777777777777654311 0 1134566677778888888888888877765
No 190
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.21 E-value=1.1e-05 Score=84.17 Aligned_cols=138 Identities=9% Similarity=-0.009 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695 478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH 557 (701)
Q Consensus 478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 557 (701)
....|..+...|.+.|++++|+..|++..+.. |+...+ ..+...+ ... ....+|..+..
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~-----------~~~~~~~-~~~-------~~~~~~~nla~ 325 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL--EMEYGL-----------SEKESKA-SES-------FLLAAFLNLAM 325 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTCCSC-----------CHHHHHH-HHH-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccC-----------ChHHHHH-HHH-------HHHHHHHHHHH
Confidence 34556666677777777777777777766522 221000 0000000 000 01344555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 037695 558 RYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLA 636 (701)
Q Consensus 558 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 636 (701)
+|.+.|++++|+..+++++...|. ..++..++.+|...|++++|+..|+++++..+. +...+..+..++...|++++|
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666555 455666666666666666666666666654422 444555556666666655544
Q ss_pred H
Q 037695 637 Y 637 (701)
Q Consensus 637 ~ 637 (701)
.
T Consensus 405 ~ 405 (457)
T 1kt0_A 405 D 405 (457)
T ss_dssp H
T ss_pred H
Confidence 4
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.20 E-value=2.9e-06 Score=69.62 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=45.3
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 037695 527 NGRVEEATELMMKMLSKG--LVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGK 603 (701)
Q Consensus 527 ~g~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 603 (701)
.|++++|+..|++.++.+ -+.+...+..+..+|...|++++|+..|+++++..|+ ..++..++.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 355555666666655532 1222344555555556666666666666666655555 4555555666666666666666
Q ss_pred HHHHHHHc
Q 037695 604 ILGKVLRT 611 (701)
Q Consensus 604 ~~~~~~~~ 611 (701)
.++++++.
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655554
No 192
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.16 E-value=4.2e-06 Score=71.06 Aligned_cols=96 Identities=14% Similarity=0.030 Sum_probs=67.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 561 QVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGY----------LEEAGKILGKVLRTASKADASTCHVLVESYLN 629 (701)
Q Consensus 561 ~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 629 (701)
+.+.+++|++.+++.++.+|. ...|..++.++...++ +++|+..|+++++..+. +..+|..++.+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 445667777777777777776 6667767777766655 35777777777777644 66777777777776
Q ss_pred cC-----------ChhhHHHHHHHHHhCCCCCCHhhHHHHH
Q 037695 630 KG-----------IPLLAYKVACRMFNRNLIPDLKLCKKVS 659 (701)
Q Consensus 630 ~g-----------~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 659 (701)
.| ++++|++.|+++++ +.|+...|...+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 64 78888888888888 777766555443
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.14 E-value=2e-05 Score=79.40 Aligned_cols=89 Identities=9% Similarity=-0.059 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037695 548 TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES 626 (701)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 626 (701)
+..+|..+..+|.+.|++++|+..++++++..|. ..++..++.+|...|++++|+..|+++++..+. +...+..+...
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3566777888888888888888888888888776 677888888888888888888888888887543 66777777777
Q ss_pred HHhcCChhhHH
Q 037695 627 YLNKGIPLLAY 637 (701)
Q Consensus 627 ~~~~g~~~~A~ 637 (701)
+...++.+++.
T Consensus 351 ~~~~~~~~~a~ 361 (370)
T 1ihg_A 351 KQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666554
No 194
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.14 E-value=6.3e-05 Score=80.21 Aligned_cols=173 Identities=10% Similarity=-0.028 Sum_probs=133.7
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037695 493 GDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGR----------VEEATELMMKMLSKGLVPTVVTYRTVIHRYCQV 562 (701)
Q Consensus 493 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 562 (701)
...++|++.++++.... +-+...|+.-..++...|+ +++++..++.+.+.. +-+..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34467788888887743 2345566666666666666 889999999998864 55778888888888888
Q ss_pred C--CHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------
Q 037695 563 G--RVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFG-YLEEAGKILGKVLRTASKADASTCHVLVESYLNK-------- 630 (701)
Q Consensus 563 g--~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 630 (701)
| ++++++++++++++.+|. ..+|+.-...+...| .++++++.++++++..+. |...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 8 679999999999998887 678888888888888 889999999999887644 888888888777663
Q ss_pred ------CChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHH
Q 037695 631 ------GIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEE 670 (701)
Q Consensus 631 ------g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 670 (701)
+.+++|++.+.+++. +.|+ ...|..+...+.+.+++++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~--~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH--HCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHhcCCCccc
Confidence 457889999999998 4454 5788878877777777554
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.11 E-value=6.4e-06 Score=82.11 Aligned_cols=148 Identities=11% Similarity=0.059 Sum_probs=88.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 037695 478 NVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIH 557 (701)
Q Consensus 478 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 557 (701)
....+..+...+.+.|++++|+..|++.... .|+... +...++.+++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 3566778888899999999999999998763 455432 223344444433221 136778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCChhh
Q 037695 558 RYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVES-YLNKGIPLL 635 (701)
Q Consensus 558 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~ 635 (701)
+|.+.|++++|+..+++++...|. ..++..++.+|...|++++|...|+++++..+. +...+..+... ....+..+.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988887 778889999999999999999999998876533 55566666655 344567778
Q ss_pred HHHHHHHHHh
Q 037695 636 AYKVACRMFN 645 (701)
Q Consensus 636 A~~~~~~~~~ 645 (701)
+...|.+|+.
T Consensus 318 a~~~~~~~l~ 327 (338)
T 2if4_A 318 QKEMYKGIFK 327 (338)
T ss_dssp ----------
T ss_pred HHHHHHHhhC
Confidence 8888888887
No 196
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.03 E-value=2.2e-05 Score=81.67 Aligned_cols=124 Identities=13% Similarity=0.084 Sum_probs=71.5
Q ss_pred HHhcCCHHHHHHHHHHHHhc-----CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHH
Q 037695 559 YCQVGRVEDLLKLLEKMLSK-----QKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRT-----AS-KAD-ASTCHV 622 (701)
Q Consensus 559 ~~~~g~~~~A~~~~~~~~~~-----~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~ 622 (701)
+..+|++++|+.+++++++. +|+ ..+++.|+..|...|++++|..+++++++. |. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34456666666666555443 222 235556666666666666666666655432 11 111 244566
Q ss_pred HHHHHHhcCChhhHHHHHHHHHh-----CCCC-CCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 623 LVESYLNKGIPLLAYKVACRMFN-----RNLI-PDL-KLCKKVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
|+..|..+|++++|..+++++++ .|.. |+. .+...+..++...+++++|...|.++.+..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66667777777777776666654 1221 222 455566677777788888888888776654
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.00 E-value=0.00017 Score=60.84 Aligned_cols=110 Identities=14% Similarity=0.037 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHH
Q 037695 564 RVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN----KGIPLLAYKV 639 (701)
Q Consensus 564 ~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 639 (701)
++++|+++|++..+.+.. ... ++..|...+.+++|...|+++.+.+ ++..+..|+..|.. .+++++|+..
T Consensus 10 d~~~A~~~~~~aa~~g~~-~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-FGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-THH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-hhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 455666666666554422 222 5555555556666666666666643 55666666666666 5667777777
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 037695 640 ACRMFNRNLIPDLKLCKKVSERLIL----EGKSEEADTLMLRFVERG 682 (701)
Q Consensus 640 ~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 682 (701)
++++.+.| +...+..++..|.. .+++++|..+|+++.+.|
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77766642 45566666666766 677777777777777765
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.94 E-value=6.6e-06 Score=66.53 Aligned_cols=62 Identities=13% Similarity=0.158 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRT 611 (701)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 611 (701)
..+..+...+...|++++|+..|++++...|. ..++..++.++...|++++|+..++++++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34444444444455555555555544444443 344444444444444444444444444443
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.93 E-value=1.9e-05 Score=67.08 Aligned_cols=97 Identities=9% Similarity=-0.063 Sum_probs=81.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh----------hhHHHHHHHHHhCCCCCC-HhhHHHHHHH
Q 037695 593 CSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIP----------LLAYKVACRMFNRNLIPD-LKLCKKVSER 661 (701)
Q Consensus 593 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~p~-~~~~~~l~~~ 661 (701)
.+.+.+++|...++++++..+. +...|..++.++...|++ ++|+..|+++++ +.|+ ...|..++.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHH
Confidence 4566789999999999998755 899999999999998875 499999999999 6665 4889999999
Q ss_pred HHhcC-----------CHHHHHHHHHHHHHcCCCCCchHHHH
Q 037695 662 LILEG-----------KSEEADTLMLRFVERGHIQPKSEEHL 692 (701)
Q Consensus 662 ~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~l 692 (701)
|...| ++++|+.+|+++++.+|..+.-...+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al 131 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99875 89999999999999998765544433
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.90 E-value=5.9e-05 Score=61.38 Aligned_cols=78 Identities=13% Similarity=-0.017 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 567 DLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 567 ~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
.|+..|+++++..|. ...+..++..|...|++++|+..++++++..+ .+...|..++.+|...|++++|+..++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555554 45555666666666666666666666665542 2455555666666666666666666666555
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.87 E-value=5.6e-05 Score=60.86 Aligned_cols=93 Identities=10% Similarity=-0.010 Sum_probs=68.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-------Hhh
Q 037695 582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD-------LKL 654 (701)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~ 654 (701)
...+..++..+...|++++|+..++++++..+ .++..+..++.+|...|++++|+..++++++ +.|+ ...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLR--YTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--SCSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCccHHHHHHHH
Confidence 34566777788888888888888888887653 3677777888888888888888888888887 4443 456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHH
Q 037695 655 CKKVSERLILEGKSEEADTLMLR 677 (701)
Q Consensus 655 ~~~l~~~~~~~g~~~~A~~~~~~ 677 (701)
+..++.++...|++++|+..+++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHHH
Confidence 66777777777777777766643
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.85 E-value=0.00037 Score=58.76 Aligned_cols=110 Identities=12% Similarity=-0.018 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHh----cCCHHHHHHH
Q 037695 529 RVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCS----FGYLEEAGKI 604 (701)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~ 604 (701)
++++|...|++..+.| .|... |...|...+.+++|+++|++..+. .++.++..|+.+|.. .+++++|..+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 4556666666666655 33332 455555555666666666666654 345566666666665 5667777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHhCC
Q 037695 605 LGKVLRTASKADASTCHVLVESYLN----KGIPLLAYKVACRMFNRN 647 (701)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 647 (701)
|+++.+.+ ++..+..|...|.. .+++++|+..++++.+.|
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77666643 55666666666666 666777777777666643
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.82 E-value=0.0002 Score=54.99 Aligned_cols=76 Identities=16% Similarity=0.189 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESY 627 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 627 (701)
.+..+...+...|++++|+..+++++...|. ..++..++.++...|++++|...++++++..+ .+...+..++.++
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~ 87 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence 3444444455555555555555555544443 34444445555555555555555555444432 1334444444333
No 204
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.80 E-value=6.5e-05 Score=78.05 Aligned_cols=89 Identities=13% Similarity=0.001 Sum_probs=38.3
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CC-CHHHHH
Q 037695 488 GFCQKGDLEEALSLLDDMYLC---KKDPD----TVTYTTIIDALSKNGRVEEATELMMKMLSK-----GL-VP-TVVTYR 553 (701)
Q Consensus 488 ~~~~~g~~~~A~~~~~~~~~~---~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~-~p-~~~~~~ 553 (701)
.+...|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..++++.+.. |- .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344555666665555554421 01111 223444555555555555555555444321 10 01 122344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 037695 554 TVIHRYCQVGRVEDLLKLLEKML 576 (701)
Q Consensus 554 ~l~~~~~~~g~~~~A~~~~~~~~ 576 (701)
.|...|...|++++|+.++++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 44444444444444444444443
No 205
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.77 E-value=0.00018 Score=58.36 Aligned_cols=79 Identities=19% Similarity=0.166 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 532 EATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLR 610 (701)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 610 (701)
.|+..|++..+.. +.+...+..+...|...|++++|+..|++++...|. ...+..++.+|...|++++|...|+++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566677766653 446777777777788888888888888888777776 66777778888888888888888887766
Q ss_pred c
Q 037695 611 T 611 (701)
Q Consensus 611 ~ 611 (701)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 4
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.71 E-value=0.00018 Score=56.73 Aligned_cols=64 Identities=9% Similarity=0.072 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 548 TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRT 611 (701)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 611 (701)
+...+..+..+|...|++++|+..|+++++..|. ..++..++.+|...|++++|+..++++++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4556666666666777777777777777666665 556666666676777777777766666543
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.64 E-value=0.00032 Score=68.49 Aligned_cols=70 Identities=13% Similarity=-0.019 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695 614 KADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQ 685 (701)
Q Consensus 614 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 685 (701)
+.++.++..+...+...|++++|+..+++++.. .|+...|..++..+.-.|++++|.+.|++++..+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 445666666666666667777777777777773 3566566666666777777777777777777766533
No 208
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.62 E-value=0.00052 Score=52.55 Aligned_cols=81 Identities=16% Similarity=0.175 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHH
Q 037695 514 TVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENL 592 (701)
Q Consensus 514 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~ 592 (701)
...+..+...+...|++++|...|++..... +.+..++..+..++.+.|++++|...++++....|. ..++..++.++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456666677777777777777777777653 445667777777788888888888888887777776 55666666665
Q ss_pred Hhc
Q 037695 593 CSF 595 (701)
Q Consensus 593 ~~~ 595 (701)
...
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.55 E-value=0.00025 Score=55.90 Aligned_cols=63 Identities=10% Similarity=-0.045 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
..++..++.+|...|++++|+..|+++++..+. +...|..++.+|...|++++|+..++++++
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566777777777777777777777777776543 556677777777777777777777777766
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.31 E-value=0.00032 Score=55.01 Aligned_cols=56 Identities=20% Similarity=0.154 Sum_probs=28.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 589 IENLCSFGYLEEAGKILGKVLRTASKADAS-TCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 589 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+..+...|++++|+..++++++..+. +.. .+..++.+|...|++++|+..++++++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33444555555555555555544322 344 555555555555555555555555555
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.25 E-value=0.0034 Score=61.31 Aligned_cols=71 Identities=17% Similarity=0.087 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHH
Q 037695 582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCK 656 (701)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 656 (701)
+.++..++..+...|++++|...+++++..+ |+...|..++..+...|++++|.+.|++++. +.|...+|.
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~ 347 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLY 347 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHH
Confidence 4555555555555566666666666666654 4555555666666666666666666666666 455554443
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.14 E-value=0.00072 Score=52.87 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=39.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-hh-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 555 VIHRYCQVGRVEDLLKLLEKMLSKQKC-RT-AYNQVIENLCSFGYLEEAGKILGKVLRTAS 613 (701)
Q Consensus 555 l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 613 (701)
....+.+.|++++|+..++++++..|. .. .+..++.+|...|++++|+..|+++++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 344556667777777777777766665 45 666667777777777777777777766553
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.05 E-value=0.0034 Score=52.57 Aligned_cols=64 Identities=9% Similarity=-0.020 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 582 RTAYNQVIENLCSFG---YLEEAGKILGKVLRTA-SKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 582 ~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
..+...+++++++.+ +.++++.+++++++.. +..+...+..|+-+|.+.|++++|+++++.+++
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 444444555555444 3334555555544433 101233334444444555555555555555544
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.02 E-value=0.0014 Score=66.87 Aligned_cols=25 Identities=20% Similarity=-0.045 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 584 AYNQVIENLCSFGYLEEAGKILGKV 608 (701)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~~ 608 (701)
+++.++..|...|++++|+.+++++
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~a 366 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKI 366 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3444444444444444444444443
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.99 E-value=0.0081 Score=46.06 Aligned_cols=63 Identities=10% Similarity=0.033 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 582 RTAYNQVIENLCSFGY---LEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 582 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+..+..++.++...++ .++|..+++++++..+. ++.....++..+...|++++|+..|+++++
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3444444444433222 34445555554444322 444444444444444444444444444444
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.92 E-value=0.0052 Score=47.20 Aligned_cols=69 Identities=13% Similarity=0.081 Sum_probs=55.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 037695 546 VPTVVTYRTVIHRYCQVGR---VEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASK 614 (701)
Q Consensus 546 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 614 (701)
+.++..+..+..++...++ .++|..+++++++.+|+ +.+...++..+...|++++|+..|+++++..+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5677778888877765554 68889999999888888 678888888888899999999999998876543
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.91 E-value=0.0062 Score=48.03 Aligned_cols=68 Identities=12% Similarity=0.031 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695 583 TAYNQVIENLCSFGYLEEAGKILGKVLRTA------SKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL 652 (701)
Q Consensus 583 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 652 (701)
.-+..++..+...|++..|...++.+++.. ..+...++..|+.+|.+.|+++.|+..++++.+ +.|+.
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~--l~P~~ 79 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh--cCCCC
Confidence 344556666677777777777777666542 122345566666666666666666666666666 44443
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.89 E-value=0.0041 Score=63.50 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=47.2
Q ss_pred HHhcCCHHHHHHHHHHHHhc-----CCC----hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHH
Q 037695 559 YCQVGRVEDLLKLLEKMLSK-----QKC----RTAYNQVIENLCSFGYLEEAGKILGKVLRT-----AS-KAD-ASTCHV 622 (701)
Q Consensus 559 ~~~~g~~~~A~~~~~~~~~~-----~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~ 622 (701)
+.+.|++++|+.++++++.. +|+ ..+++.++..|...|++++|+.++++++.. |. .|+ ..+++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44555666666666666543 122 234555666666666666666666655432 11 111 234556
Q ss_pred HHHHHHhcCChhhHHHHHHHHHh
Q 037695 623 LVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
|+..|..+|++++|+.+++++++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Confidence 66666666666666666666554
No 219
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.88 E-value=0.022 Score=53.27 Aligned_cols=85 Identities=13% Similarity=0.060 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHhcCCC---hhHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CChhh
Q 037695 565 VEDLLKLLEKMLSKQKC---RTAYNQVIENLCSF-----GYLEEAGKILGKVLRTASKADASTCHVLVESYLNK-GIPLL 635 (701)
Q Consensus 565 ~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 635 (701)
...|...++++++.+|+ ..+|..++..|... |+.++|.+.|+++++.++.-+..++..++..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555666666666665 23556666666653 66666666666666655433355555556655553 66666
Q ss_pred HHHHHHHHHhCCCC
Q 037695 636 AYKVACRMFNRNLI 649 (701)
Q Consensus 636 A~~~~~~~~~~~~~ 649 (701)
|...+++++...+.
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 66666666664443
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.86 E-value=0.0049 Score=62.85 Aligned_cols=83 Identities=12% Similarity=0.026 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC----hhHHHHHHHH
Q 037695 528 GRVEEATELMMKMLSK---GLVPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSK-----QKC----RTAYNQVIEN 591 (701)
Q Consensus 528 g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~----~~~~~~l~~~ 591 (701)
|++++|..++++.++. -+.|+ ..+++.|+.+|...|++++|+.++++++.. +|+ ..+++.|+..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 4555555555554431 11121 345666667777777777777777666543 222 3456666666
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 037695 592 LCSFGYLEEAGKILGKVLR 610 (701)
Q Consensus 592 ~~~~g~~~~A~~~~~~~~~ 610 (701)
|...|++++|+.+++++++
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 7777777777766666543
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.81 E-value=0.082 Score=59.43 Aligned_cols=166 Identities=16% Similarity=0.103 Sum_probs=87.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 037695 448 NLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKN 527 (701)
Q Consensus 448 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 527 (701)
..++..+.+.|.++.|.++.+. .. .-.......|+++.|+++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 5555666666666666655421 11 1123345567777777765432 3566777777777777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Q 037695 528 GRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFGYLEEAGKILGK 607 (701)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 607 (701)
++++.|.+.|.++.. |..+...+...|+.+...++.+.+...+. ++.-..+|.+.|++++|++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~----~~~A~~~~~~~g~~~~a~~---- 757 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK----FNLAFNAYWIAGDIQGAKD---- 757 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC----HHHHHHHHHHHTCHHHHHH----
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc----hHHHHHHHHHcCCHHHHHH----
Confidence 777777777776643 33444445555655554444333332211 1111222333444444443
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcCCHHHH
Q 037695 608 VLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL----KLCKKVSERLILEGKSEEA 671 (701)
Q Consensus 608 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A 671 (701)
.|.+.+++++|+.++++ ..|.. .+...+...+...|+.+.|
T Consensus 758 ------------------~~~~~~~~~~A~~lA~~-----~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 758 ------------------LLIKSQRFSEAAFLGST-----YGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp ------------------HHHHTTCHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred ------------------HHHHcCChHHHHHHHHH-----hCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 44455666777766543 22223 4555555566666665433
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.78 E-value=0.0081 Score=50.26 Aligned_cols=81 Identities=17% Similarity=0.065 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-CC--hhHHHHHHHHHHhcCCHHHHHHH
Q 037695 531 EEATELMMKMLSKGLVPTVVTYRTVIHRYCQVG---RVEDLLKLLEKMLSKQ-KC--RTAYNQVIENLCSFGYLEEAGKI 604 (701)
Q Consensus 531 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p~--~~~~~~l~~~~~~~g~~~~A~~~ 604 (701)
..+.+.|.+....+ +++..+...+..++++++ ++++++.+++...+.. |. ...+..++-++.+.|++++|.+.
T Consensus 15 ~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 15 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 33444444444443 345555555555555555 3445555555555554 41 34444555555555555555555
Q ss_pred HHHHHHcC
Q 037695 605 LGKVLRTA 612 (701)
Q Consensus 605 ~~~~~~~~ 612 (701)
++.+++..
T Consensus 94 ~~~lL~ie 101 (152)
T 1pc2_A 94 VRGLLQTE 101 (152)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 55555543
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.74 E-value=0.013 Score=59.78 Aligned_cols=88 Identities=14% Similarity=0.102 Sum_probs=63.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CCC----hhHHH
Q 037695 523 ALSKNGRVEEATELMMKMLSK---GLVPT----VVTYRTVIHRYCQVGRVEDLLKLLEKMLSK-----QKC----RTAYN 586 (701)
Q Consensus 523 ~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~----~~~~~ 586 (701)
.+...|++++|..++++.++. -+.|+ ..+++.++.+|...|++++|+.++++++.. +|. ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 345667778888888777653 12222 446777788888888888888888877654 333 35678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 587 QVIENLCSFGYLEEAGKILGKVLR 610 (701)
Q Consensus 587 ~l~~~~~~~g~~~~A~~~~~~~~~ 610 (701)
.|+..|...|++++|+.+++++++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 888888888988888888887754
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.59 E-value=0.016 Score=54.22 Aligned_cols=92 Identities=13% Similarity=0.148 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhc-CCH
Q 037695 530 VEEATELMMKMLSKGLVPT---VVTYRTVIHRYCQ-----VGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSF-GYL 598 (701)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~-g~~ 598 (701)
...|...+++.++. .|+ ...|..+...|.+ -|+.++|.+.|+++++.+|+ ..++..++..++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 56788888888874 566 5678889989988 49999999999999999995 67888899999985 999
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHHHH
Q 037695 599 EEAGKILGKVLRTASK--ADASTCHVL 623 (701)
Q Consensus 599 ~~A~~~~~~~~~~~~~--~~~~~~~~l 623 (701)
++|.+.++++++.++. |+....+.+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~ 283 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL 283 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence 9999999999998877 665554444
No 225
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.22 E-value=0.18 Score=56.64 Aligned_cols=47 Identities=17% Similarity=0.178 Sum_probs=28.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 349 FCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSE 401 (701)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 401 (701)
....|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.
T Consensus 662 ~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 34566666666654332 245666666666666677666666666553
No 226
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.14 E-value=0.027 Score=45.24 Aligned_cols=87 Identities=8% Similarity=-0.092 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh---HHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCCHHHHH
Q 037695 598 LEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLL---AYKVACRMFNRNLIP--DLKLCKKVSERLILEGKSEEAD 672 (701)
Q Consensus 598 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~ 672 (701)
+..+.+.|.+....+. ++..+-..+++++.+..+... ++.+++.+.+.+ .| .......++-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3344444444444332 455555566666666655444 555666555532 12 2244445566666666666666
Q ss_pred HHHHHHHHcCCCCC
Q 037695 673 TLMLRFVERGHIQP 686 (701)
Q Consensus 673 ~~~~~~~~~~~~~~ 686 (701)
.+++.+++..|..+
T Consensus 95 ~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 95 KYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHHhCCCCH
Confidence 66666666665433
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.08 E-value=0.095 Score=41.02 Aligned_cols=66 Identities=12% Similarity=-0.018 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 548 TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ-------KC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS 613 (701)
Q Consensus 548 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 613 (701)
+...+..|...+.+.|++..|...|+.+++.. +. ..++..++.+|.+.|+++.|...++++++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 44555566667777777777777777666541 11 45666777777777777777777777776543
No 228
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.94 E-value=2.7e-06 Score=83.99 Aligned_cols=232 Identities=14% Similarity=0.087 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 037695 142 IVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVL 221 (701)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 221 (701)
.+|+.+..+..+.+...+|.+.| + +. -|+..|..++.+..+.|.+++-+..+....+. ..++..=+.|+-+|
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsy--I-kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ay 126 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSY--I-KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFAL 126 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSS--C-CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHH--H-hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHH
Confidence 36777777777777666665544 1 11 35556667777777777777766666665544 23344455666666
Q ss_pred HccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 037695 222 VVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVR 301 (701)
Q Consensus 222 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~ 301 (701)
++.++..+-.+++. .||..-...+.+-|...|.++.|.-+|..+... ..|...+.+.|++..|.
T Consensus 127 Ak~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~---------akLAstLV~L~~yq~AV 190 (624)
T 3lvg_A 127 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---------GRLASTLVHLGEYQAAV 190 (624)
T ss_dssp HTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCC---------TTTSSSSSSCSGGGSST
T ss_pred HhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccH---------HHHHHHHHHHHHHHHHH
Confidence 66666544332221 355555556666666666666666655544322 22233333444443333
Q ss_pred HHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695 302 DLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFL 381 (701)
Q Consensus 302 ~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 381 (701)
+.- ++ .-++.||..+-.+|...+++..|.-.--.++-+ | .-...++
T Consensus 191 daA--------------------------rK---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv 236 (624)
T 3lvg_A 191 DGA--------------------------RK---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELI 236 (624)
T ss_dssp TTT--------------------------TT---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGG
T ss_pred HHH--------------------------Hh---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHH
Confidence 211 11 236779999999999999998887665555432 1 1223466
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 037695 382 NGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEACDVVR 433 (701)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 433 (701)
..|-..|.+++-+.+++.-... -....-.|+.|.-.|++- ++++..+.++
T Consensus 237 ~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlk 286 (624)
T 3lvg_A 237 NYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLE 286 (624)
T ss_dssp SSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHT
T ss_pred HHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHH
Confidence 7788999999999999887742 245677788888888775 3455444443
No 229
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.66 E-value=0.66 Score=37.29 Aligned_cols=136 Identities=13% Similarity=0.159 Sum_probs=76.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHH
Q 037695 526 KNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGK 603 (701)
Q Consensus 526 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~ 603 (701)
-.|.+++..++..+..+. .+..-|+.++--....-+=+-..++++.+-+.... -.....++.+|.+.|.
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~------ 89 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT------ 89 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC------
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcc------
Confidence 456666666666666553 24444555554444444445555555554433210 0112233333333332
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 604 ILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
+.......+..+..+|..+.-.+++..++. +..|++...-.++.+|.+.|+..+|.+++.++-++|.
T Consensus 90 ------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 ------------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 333344455566677777766666666543 3566777777788888888888888888888888774
No 230
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.56 E-value=0.088 Score=43.33 Aligned_cols=54 Identities=13% Similarity=0.085 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 037695 596 GYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP 650 (701)
Q Consensus 596 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 650 (701)
++.++|.++|+.++.....- ..+|...+..-.++|+...|.+++.+++..+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 55566666666665542222 5555555555566666666666666666655443
No 231
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.32 E-value=0.00065 Score=67.49 Aligned_cols=231 Identities=10% Similarity=0.084 Sum_probs=154.5
Q ss_pred CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037695 139 HDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAI 218 (701)
Q Consensus 139 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 218 (701)
-|+..|..++.+..+.|.+++-...+.-.++.. .++..=+.|+-+|++.++..+-.+. . ..||..-...+.
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEef----l---~~~N~A~iq~VG 151 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----I---NGPNNAHIQQVG 151 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTST----T---SCCSSSCTHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHH----H---cCCCcccHHHHH
Confidence 345579999999999999999999987665543 3555567899999999987653332 2 257777788888
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChh
Q 037695 219 HVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIK 298 (701)
Q Consensus 219 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~ 298 (701)
.-|...|.++.|.-+|..+.. |.-|...+.+.|++..|.+.-++. -++.||-.+-.+|...+.+.
T Consensus 152 Drcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaArKA------ns~ktWKeV~~ACvd~~Efr 216 (624)
T 3lvg_A 152 DRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 216 (624)
T ss_dssp HHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTTTC------CSSCSHHHHTHHHHHSCTTT
T ss_pred HHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHHhc------CChhHHHHHHHHHhCchHHH
Confidence 999999999999888776542 445556677778877776543222 36677888888888888777
Q ss_pred HHHHHHHHHHhc-------CCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC
Q 037695 299 EVRDLMEKMVND-------SNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHH-GC 370 (701)
Q Consensus 299 ~a~~~~~~~~~~-------~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~ 370 (701)
-|.-+--.++-. ...+-+.|.+++-+.+++.-... -......|+-|.-.|++- ++++..+-++....+ ++
T Consensus 217 LAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNi 294 (624)
T 3lvg_A 217 LAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNI 294 (624)
T ss_dssp TTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCC
T ss_pred HHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccH
Confidence 665443333221 12344558888888888776632 235677888888878775 344444443332221 11
Q ss_pred CC------CHHHHHHHHHHHHhcCCHHHHHH
Q 037695 371 KP------NTVSYTAFLNGLCHNGKSLEARE 395 (701)
Q Consensus 371 ~~------~~~~~~~li~~~~~~g~~~~A~~ 395 (701)
+. ....|.-++..|.+-.+++.|..
T Consensus 295 pKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 295 PKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 11 23457777777887777776643
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.99 E-value=0.1 Score=41.82 Aligned_cols=69 Identities=14% Similarity=0.069 Sum_probs=35.8
Q ss_pred ChhHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 037695 581 CRTAYNQVIENLCSFGYLEE---AGKILGKVLRTASK-ADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD 651 (701)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 651 (701)
+..+-..+++++.+..+... ++.+++.+.+.+.+ -.......|+-++.+.|++++|+.+++.+++ +.|+
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~--~eP~ 106 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ--TEPQ 106 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH--hCCC
Confidence 34555555555555544433 55555555543210 1223344455566666666666666666666 4443
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.93 E-value=1 Score=38.70 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 515 VTYTTIIDALSKNGRVEEATELMM 538 (701)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~ 538 (701)
..|..|.......|+++-|.+.|.
T Consensus 35 ~~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 35 ITWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Confidence 334444444444444444444443
No 234
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.84 E-value=6.1 Score=43.76 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=14.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHch
Q 037695 249 YNCLIKGYCDLHRIKDAIKLIDEMP 273 (701)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~~~~~m~ 273 (701)
|..++.++.+.++.+.+.++|..+.
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~l~ 257 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKKLK 257 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444555556666666666666654
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.41 E-value=0.26 Score=40.62 Aligned_cols=105 Identities=10% Similarity=0.096 Sum_probs=71.4
Q ss_pred CCCHHHHHHHHHHHHhcCCH------HHHHHHHHHHHhCCCCCCHH----HHHHHHH---HHHhcCCHHHHHHHHHHHHh
Q 037695 511 DPDTVTYTTIIDALSKNGRV------EEATELMMKMLSKGLVPTVV----TYRTVIH---RYCQVGRVEDLLKLLEKMLS 577 (701)
Q Consensus 511 ~p~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~~~~p~~~----~~~~l~~---~~~~~g~~~~A~~~~~~~~~ 577 (701)
+-|..+|-..+...-+.|++ ++..++|++.... +||+.. .|..|-- .+...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34566666666666666777 7777788877764 555421 1111111 12344899999999999977
Q ss_pred cCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 037695 578 KQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKAD 616 (701)
Q Consensus 578 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 616 (701)
.+.. ..+|...+..-.+.|++..|.+++.+++..++.|.
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 6433 55666667777789999999999999998776644
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.98 E-value=0.82 Score=37.34 Aligned_cols=66 Identities=14% Similarity=-0.001 Sum_probs=31.2
Q ss_pred CChhHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 580 KCRTAYNQVIENLCSFGY---LEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 580 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
|+..+-..+++++.+..+ ..+++.+++.+.+..+.........|+-++.+.|++++|..+.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 334444445555554433 234455555555433322333334444455555555555555555555
No 237
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.86 E-value=0.38 Score=38.73 Aligned_cols=64 Identities=14% Similarity=0.003 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 582 RTAYNQVIENLCSFGY---LEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 582 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+.+-..+++++.+..+ ..+++.+++.+.+.++.-....+..|+-++.+.|++++|+.+.+.+++
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444445544432 234444454444433222233334444445555555555555555544
No 238
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.78 E-value=0.86 Score=37.23 Aligned_cols=76 Identities=8% Similarity=-0.028 Sum_probs=61.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCh---hhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCch
Q 037695 613 SKADASTCHVLVESYLNKGIP---LLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKS 688 (701)
Q Consensus 613 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 688 (701)
..|++.+-..++|++.+..+. .+++.+++.+.+.+..-.......++-++.+.|++++|.++.+.+++..|.....
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 367888888999999998865 4788999999884433234777778999999999999999999999988755443
No 239
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.78 E-value=5.4 Score=40.59 Aligned_cols=93 Identities=15% Similarity=0.236 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCh----hH
Q 037695 518 TTIIDALSKNGRVEEATELMMKMLSK--GLVPT---VVTYRTVIHRYCQVGRVEDLLKLLEKMLSK----QKCR----TA 584 (701)
Q Consensus 518 ~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~----~~ 584 (701)
..|...|...|++.+|..++..+... |..+. ...+...++.|...+++..|..++.++... .+.+ ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44555566666666666666655432 21111 234445556666666666666666655321 1111 23
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 585 YNQVIENLCSFGYLEEAGKILGKVLR 610 (701)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 610 (701)
+...+..+...+++.+|...|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34455555566666666666665543
No 240
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.76 E-value=0.28 Score=53.15 Aligned_cols=52 Identities=21% Similarity=0.108 Sum_probs=33.9
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 625 ESYLNKGIPLLAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRF 678 (701)
Q Consensus 625 ~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (701)
..+...|+++.|++++++++. ..|+ ..+|..|+.+|...|+++.|+-.++.+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345556677777777777666 4554 466667777777777777777666655
No 241
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.72 E-value=3 Score=35.75 Aligned_cols=99 Identities=8% Similarity=0.135 Sum_probs=53.5
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 037695 349 FCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGKLSEA 428 (701)
Q Consensus 349 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 428 (701)
....|+++.|.++.+.+ -+...|..|.......|+++-|.+.|..... +..+.-.|.-.|+.+..
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34566677666665554 1456666666666666666666666655443 33444455555555554
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 429 CDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQ 468 (701)
Q Consensus 429 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 468 (701)
..+-+.....|- ++.....+.-.|+++++..+|.
T Consensus 80 ~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHH
Confidence 444444333331 2333334444555555555553
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.40 E-value=6.4 Score=40.01 Aligned_cols=187 Identities=10% Similarity=0.084 Sum_probs=102.4
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcC
Q 037695 458 GKMDGAKKFMQECLNK-----GCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDAL----SKNG 528 (701)
Q Consensus 458 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~----~~~g 528 (701)
|+++.|...+..+.+. ...........++..|...|+++...+.+.-+.+.... -......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence 6778887777655432 23445666777888888888888887777666542211 122223333322 2233
Q ss_pred CHHHHHH--HHHHHHh--CC-CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCC-----hhHHHHHHHHHH
Q 037695 529 RVEEATE--LMMKMLS--KG-LVP---TVVTYRTVIHRYCQVGRVEDLLKLLEKMLSK--QKC-----RTAYNQVIENLC 593 (701)
Q Consensus 529 ~~~~A~~--~~~~m~~--~~-~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~-----~~~~~~l~~~~~ 593 (701)
..+.... +.+.... .| +-. .......|...+...|++.+|..++..+... +.. ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 3222111 1111111 11 111 1223355667777778888888777776543 111 234555667777
Q ss_pred hcCCHHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 594 SFGYLEEAGKILGKVLR----TASKAD--ASTCHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 594 ~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
..+++..|..++.++.. ....|+ ...+..++..+...+++.+|...|..+..
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 77777777777776532 111222 12345556666677777777776666655
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.31 E-value=0.78 Score=36.93 Aligned_cols=65 Identities=11% Similarity=0.109 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 037695 546 VPTVVTYRTVIHRYCQVGRV---EDLLKLLEKMLSKQKC--RTAYNQVIENLCSFGYLEEAGKILGKVLR 610 (701)
Q Consensus 546 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 610 (701)
.|++.+-..+..++.++.+. .+++.+++.+....|. ...+-.++-++.+.|++++|.+..+.+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444444332 2344444444444442 23334444444455555555555555444
No 244
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=93.25 E-value=0.36 Score=40.67 Aligned_cols=122 Identities=12% Similarity=0.053 Sum_probs=68.9
Q ss_pred CCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-------hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 544 GLVPTVVT--YRTVIHRYCQVGRVEDLLKLLEKMLSK---QKC-------RTAYNQVIENLCSFGYLEEAGKILGKVLRT 611 (701)
Q Consensus 544 ~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 611 (701)
|+.|.... +..-+..+...|.++.|+-+...++.. +|+ ..++..+++++...|++..|...|+++++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 55554433 444566777888999888777765443 333 125667788888889999999998887654
Q ss_pred CC--CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 612 AS--KADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRF 678 (701)
Q Consensus 612 ~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 678 (701)
.. .-+......+. ....... .....++...-..++.+|.+.|++++|+.+++.+
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 21 11111111110 0000000 0112334567778999999999999999999765
No 245
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=92.65 E-value=3.4 Score=33.33 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=25.0
Q ss_pred HHHHHhcCCHHHHHHHHHHH-HhcCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 556 IHRYCQVGRVEDLLKLLEKM-LSKQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTA 612 (701)
Q Consensus 556 ~~~~~~~g~~~~A~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 612 (701)
+..+...|+-++..+++..+ ....|+++.+-.++.+|.+.|+..+|.+++.++-+.|
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 34444444444444444443 2222334444444444444444444444444444443
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.14 E-value=0.77 Score=49.74 Aligned_cols=124 Identities=14% Similarity=0.058 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcC-CHHHHHHHHHHHHhC------CCCCC-H--
Q 037695 483 TSLIRGFCQKGD-LEEALSLLDDMYLCKKDPDTVTY--TTIIDALSKNG-RVEEATELMMKMLSK------GLVPT-V-- 549 (701)
Q Consensus 483 ~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~--~~li~~~~~~g-~~~~A~~~~~~m~~~------~~~p~-~-- 549 (701)
..++..+...++ ++.|+.+|+++... .|...++ ..++..+...+ +--+|.+++.+.++. ..++. .
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 344444444555 57788888887764 3333222 22333332222 223455555554421 11111 1
Q ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 550 --------VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKV 608 (701)
Q Consensus 550 --------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 608 (701)
..+..-+..|...|+++.|+++.+++...-|+ ..+|..|+.+|...|+++.|+-.+..+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11222234455667777777777777777776 677777777777777777777666654
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=91.29 E-value=12 Score=36.95 Aligned_cols=166 Identities=12% Similarity=0.010 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCHHHH-
Q 037695 479 VVNFTSLIRGFCQKGDLEEALSLLDDMYLCK-KDP---DTVTYTTIIDALSKN-GRVEEATELMMKMLSKGLVPTVVTY- 552 (701)
Q Consensus 479 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-~~p---~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~p~~~~~- 552 (701)
......|...|.+.|+.++...++...+..= .-| .......++..+... +..+.-.+++.+.++.. .-...+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3455677888899999999888888765311 111 123355667766653 33444455555544321 0011122
Q ss_pred -----HHHHHHHHhcCCHHHHHHHHHHHHhcC-----CC--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHH
Q 037695 553 -----RTVIHRYCQVGRVEDLLKLLEKMLSKQ-----KC--RTAYNQVIENLCSFGYLEEAGKILGKVLRTA--SKADAS 618 (701)
Q Consensus 553 -----~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 618 (701)
..++..|...|++.+|.+++.++...- +. ..++..-+..|...+++.++...+.++.... +.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 256777888888888888877776541 11 3455556677778888888888887765432 223433
Q ss_pred HHH----HHHHHHH-hcCChhhHHHHHHHHHh
Q 037695 619 TCH----VLVESYL-NKGIPLLAYKVACRMFN 645 (701)
Q Consensus 619 ~~~----~l~~~~~-~~g~~~~A~~~~~~~~~ 645 (701)
+.. .-+-.+. ..++|..|...|-+..+
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 221 1233455 67788888777766654
No 248
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=91.27 E-value=10 Score=36.02 Aligned_cols=165 Identities=13% Similarity=0.079 Sum_probs=89.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH----HHHHHhCCCCCCHHHHHHHHHH
Q 037695 483 TSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATEL----MMKMLSKGLVPTVVTYRTVIHR 558 (701)
Q Consensus 483 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~l~~~ 558 (701)
.++..-|.+.+++++|++++..-. ..+.+.|+...|..+ .+-..+.+++++......++..
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345555667777777777765432 123344554444433 3333445666666666666665
Q ss_pred HHhcCCHH-HHHHHHHHHHh--------cCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 037695 559 YCQVGRVE-DLLKLLEKMLS--------KQKCRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLN 629 (701)
Q Consensus 559 ~~~~g~~~-~A~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 629 (701)
+.....-+ .=.++++++++ ...++..+..++..|.+.|++.+|...|-. +..-++..+..++.-+.+
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHH
Confidence 54422111 11223333221 123467888889999999999998887742 111135556555554444
Q ss_pred c---CChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 630 K---GIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 630 ~---g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
. |...++--+ +...++ .|+-.|+...|..++....++
T Consensus 178 ~~~~~~~~e~dlf--------------~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 178 QVDDIEDSTVAEF--------------FSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HTTCCCHHHHHHH--------------HHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred hcCCCCcchHHHH--------------HHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 4 433332111 111222 355578888888888776543
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=91.09 E-value=11 Score=36.08 Aligned_cols=81 Identities=17% Similarity=0.056 Sum_probs=50.2
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037695 581 CRTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSE 660 (701)
Q Consensus 581 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 660 (701)
++.....++..|.+.+++.+|...|- .+..+.+..+..++.-+.+.+...++- .-+...+ -
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~d--------------lfiaRaV-L 195 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESHTAP--------------LYCARAV-L 195 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGHH--------------HHHHHHH-H
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCccHH--------------HHHHHHH-H
Confidence 46778888999999999999988873 233434466656655554444322221 1122222 2
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 037695 661 RLILEGKSEEADTLMLRFVE 680 (701)
Q Consensus 661 ~~~~~g~~~~A~~~~~~~~~ 680 (701)
.|+-.++...|..++..+.+
T Consensus 196 ~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 196 PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHH
Confidence 45668888989887766654
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=90.68 E-value=24 Score=39.21 Aligned_cols=253 Identities=15% Similarity=0.094 Sum_probs=117.6
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-----CCHHHHHHHHHHH
Q 037695 384 LCHNGKSLEAREMINTSEEEWWTPN--AITYSVVMHGLRREGKLSEACDVVREMVKKGF--F-----PTPVEINLLIQSL 454 (701)
Q Consensus 384 ~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~~~--~-----~~~~~~~~li~~~ 454 (701)
....|+.++++.++......+-..+ ...-..+.-+....|..+++..++...+...- . +....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4455666666666655443110112 12222333344555655567776666554321 0 1111112222222
Q ss_pred HhcCC-HHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH--HHHHhcCC
Q 037695 455 CREGK-MDGAKKFMQECLNKGCAVNVVNFT--SLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTII--DALSKNGR 529 (701)
Q Consensus 455 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li--~~~~~~g~ 529 (701)
+-.|. -+++...+..++.... +...... ++...|.-.|+.+....++..+.+. .+..+...+. -++...|+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCC
Confidence 22222 2344455555444311 1111122 2233344566766666676666542 1223333333 33446677
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 037695 530 VEEATELMMKMLSKGLVPTVVTYR---TVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKIL 605 (701)
Q Consensus 530 ~~~A~~~~~~m~~~~~~p~~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 605 (701)
.+.+..+.+.+.... .|.. -|. ++.-+|+..|+.....+++..+.....+ ......++-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 777777777776531 2222 222 2334566777776666677777654221 222233333444456655566666
Q ss_pred HHHHHcCCCCCHHHHHH--HHHHHHhcCCh-hhHHHHHHHHHh
Q 037695 606 GKVLRTASKADASTCHV--LVESYLNKGIP-LLAYKVACRMFN 645 (701)
Q Consensus 606 ~~~~~~~~~~~~~~~~~--l~~~~~~~g~~-~~A~~~~~~~~~ 645 (701)
..+.+.+ |+.+-.. ++-+....|+. .+++..+..+..
T Consensus 618 ~~L~~~~---d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 618 QLLSKSH---NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTGGGCS---CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHhcC---CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 5554422 3333323 33334444443 467777777764
No 251
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.30 E-value=8.6 Score=44.65 Aligned_cols=191 Identities=8% Similarity=0.048 Sum_probs=110.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------------
Q 037695 449 LLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLDDMYLCKK------------------ 510 (701)
Q Consensus 449 ~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~------------------ 510 (701)
.++..+...+..+.+..+...+ +.+...--.+..+|...|++++|...|.+... |+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 3455555666666655544322 22444434455667777777777777765421 11
Q ss_pred -----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 037695 511 -----DPDTVTYTTIIDALSKNGRVEEATELMMKMLSKGLVPTV----VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC 581 (701)
Q Consensus 511 -----~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 581 (701)
..-..-|..++..+.+.+.++.+.++-...++..-+.+. ..|..+.+.+...|++++|...+-.+....-.
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 011234677778888888888888887776654212222 25777888888999999998888777655444
Q ss_pred hhHHHHHHHHHHhcCCHH------------HHHHHHHHHHH-c-CCCCCHHHHHHHHHHHHhcCChhhHH-HHHHHHHh
Q 037695 582 RTAYNQVIENLCSFGYLE------------EAGKILGKVLR-T-ASKADASTCHVLVESYLNKGIPLLAY-KVACRMFN 645 (701)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~------------~A~~~~~~~~~-~-~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~ 645 (701)
...+..++..+|..|..+ +...++..-.+ . .+...+.-|..|-.-+...|++..|- -+|+++.+
T Consensus 971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 667777777777666543 33334332211 1 11112233444444456677776544 45565554
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.58 E-value=2.7 Score=31.77 Aligned_cols=63 Identities=17% Similarity=0.225 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHH
Q 037695 529 RVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIEN 591 (701)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~ 591 (701)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+.+..+-.+ ..+|..++.-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence 45567777888888888999999999999999999999999999888766433 5566666543
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.57 E-value=8.2 Score=35.51 Aligned_cols=119 Identities=18% Similarity=0.166 Sum_probs=67.0
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCChh
Q 037695 558 RYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKADA--STCHVLVESYLNKGIPL 634 (701)
Q Consensus 558 ~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 634 (701)
...+.|++++|++.+...++.+|. ...-..++..||-.|+++.|.+-++...+..+...+ ..|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a-------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA-------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH--------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH--------
Confidence 345667777777777776666666 455556677777777777777777766665432111 123333321
Q ss_pred hHHHHHHHHHhCCCCC-----CHhhHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCC
Q 037695 635 LAYKVACRMFNRNLIP-----DLKLCKKVSERLI--LEGKSEEADTLMLRFVERGHIQP 686 (701)
Q Consensus 635 ~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~ 686 (701)
...=.....-+-.| .......++.++. ..|+.++|..+-..+.+.-+..+
T Consensus 78 --E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 78 --AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp --HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred --HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 11111222222222 2244445555554 46889999998888888765443
No 254
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.51 E-value=1.8 Score=36.48 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037695 550 VTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ 579 (701)
Q Consensus 550 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 579 (701)
+.-..+..+|.+.+++++|+.+++.+..+.
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 333344555555555555555555544433
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.87 E-value=19 Score=35.54 Aligned_cols=167 Identities=10% Similarity=0.034 Sum_probs=91.7
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHH--
Q 037695 410 ITYSVVMHGLRREGKLSEACDVVREMVKK-GFFPT---PVEINLLIQSLCREG-KMDGAKKFMQECLNKGCAVNVVNF-- 482 (701)
Q Consensus 410 ~~~~~ll~~~~~~g~~~~A~~~~~~m~~~-~~~~~---~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~-- 482 (701)
.....+...|.+.|+.++..+++...... +..|. ......++..+.... ..+.-..+..+..+.. ...-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 45566788888888888888888765432 11121 234566677666533 3333344444333320 0111222
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHH
Q 037695 483 ----TSLIRGFCQKGDLEEALSLLDDMYLCKKDPD-----TVTYTTIIDALSKNGRVEEATELMMKMLSK--GLVPTVVT 551 (701)
Q Consensus 483 ----~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~ 551 (701)
.-++..|...|++.+|.+++.++.+.=...| ...|..-++.|...+++.++...+...... .+.+++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 1466777778888888777777764211111 123455566677777777777777766543 23233332
Q ss_pred HHH----HHHHHH-hcCCHHHHHHHHHHHHh
Q 037695 552 YRT----VIHRYC-QVGRVEDLLKLLEKMLS 577 (701)
Q Consensus 552 ~~~----l~~~~~-~~g~~~~A~~~~~~~~~ 577 (701)
-.. -...+. ..++|..|...|-+...
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 211 122344 56777777777666543
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.71 E-value=4 Score=40.67 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHH
Q 037695 552 YRTVIHRYCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKV 608 (701)
Q Consensus 552 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 608 (701)
...++..+...|++++|...+..+...+|. ...+..++.+|.+.|+..+|.+.|+..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344455555666666666666666666665 445666666666666666666666554
No 257
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.19 E-value=17 Score=42.26 Aligned_cols=84 Identities=13% Similarity=0.003 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHH
Q 037695 584 AYNQVIENLCSFGYLEEAGKILGKVLRTASKADA----STCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVS 659 (701)
Q Consensus 584 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 659 (701)
-|..++..+.+.|.++.+.++...+++.....+. ..|..+...+...|++++|...+-.+-.... -......++
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3556666777777777777777777665433232 2466677777888888888777766655322 345666666
Q ss_pred HHHHhcCCHH
Q 037695 660 ERLILEGKSE 669 (701)
Q Consensus 660 ~~~~~~g~~~ 669 (701)
..++..|..+
T Consensus 979 ~~lce~~~~~ 988 (1139)
T 4fhn_B 979 NQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHCCHH
T ss_pred HHHHhCCChh
Confidence 6666555433
No 258
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=86.17 E-value=5.3 Score=39.77 Aligned_cols=70 Identities=13% Similarity=-0.020 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHh-----CCCCCCHhhHH
Q 037695 586 NQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFN-----RNLIPDLKLCK 656 (701)
Q Consensus 586 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~p~~~~~~ 656 (701)
..++..+...|++.+|+..+..++... +.+...+..++.+|...|+..+|+..|+++.+ .|+.|...+-.
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 344555555666666666666655543 33555666666666666666666666655433 35666554433
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.16 E-value=4.3 Score=30.68 Aligned_cols=59 Identities=15% Similarity=0.219 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695 427 EACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLI 486 (701)
Q Consensus 427 ~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 486 (701)
++..-++.+....+.|.+.+..+.+++|-+.+++..|.++++.++.+ +.+...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 44444555555566666666666666666666666666666666554 222333444443
No 260
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=84.25 E-value=11 Score=30.18 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=50.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CChhHHHHHHHH
Q 037695 529 RVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ-KCRTAYNQVIEN 591 (701)
Q Consensus 529 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~ 591 (701)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+.+..+- +...+|..++.-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 344567777888888899999999999999999999999999999887764 335567666543
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=83.69 E-value=31 Score=32.79 Aligned_cols=81 Identities=11% Similarity=0.004 Sum_probs=46.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 037695 547 PTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSF---GYLEEAGKILGKVLRTASKADASTCHVL 623 (701)
Q Consensus 547 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l 623 (701)
-++.....+...|.+.|++.+|...|- ....-++..+..++.-+... |...++--++.+ .
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i--~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R---------------a 194 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM--LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR---------------L 194 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH--TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH---------------H
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH--hCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH---------------H
Confidence 367888888888999999998887763 11111234444444433333 444443222222 1
Q ss_pred HHHHHhcCChhhHHHHHHHHH
Q 037695 624 VESYLNKGIPLLAYKVACRMF 644 (701)
Q Consensus 624 ~~~~~~~g~~~~A~~~~~~~~ 644 (701)
+-.|+..|+...|...+....
T Consensus 195 VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHH
Confidence 224556677777777766554
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=82.84 E-value=4.8 Score=37.02 Aligned_cols=60 Identities=23% Similarity=0.211 Sum_probs=50.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695 590 ENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL 652 (701)
Q Consensus 590 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 652 (701)
..+.+.|++++|+..+...++.. +.|...-..|+..+|-.|+++.|.+.++.+.+ +.|+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchh
Confidence 34567899999999999988876 44888888899999999999999999999988 56654
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.38 E-value=48 Score=31.69 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHcCCCCCHHHHHHHHH
Q 037695 412 YSVVMHGLRREGKLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKK----FMQECLNKGCAVNVVNFTSLIR 487 (701)
Q Consensus 412 ~~~ll~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~----~~~~~~~~~~~~~~~~~~~ll~ 487 (701)
|.++..-|.+.+++++|++++-.-. ..+.+.|+...|-. +++-..+.+.+++.....-++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3344455777777777777654321 11233344333322 2334444566677666666666
Q ss_pred HHHhcCCHH-HHHHHHHHHH----hCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 037695 488 GFCQKGDLE-EALSLLDDMY----LCK--KDPDTVTYTTIIDALSKNGRVEEATELM 537 (701)
Q Consensus 488 ~~~~~g~~~-~A~~~~~~~~----~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~ 537 (701)
.+.....-+ .=.++.+++. +.| ..-|......+...|.+.+++.+|...|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 555443211 1112222222 111 2234455555556666666666655554
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.19 E-value=12 Score=37.83 Aligned_cols=95 Identities=15% Similarity=-0.014 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--C--hhHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHH--HH
Q 037695 551 TYRTVIHRYCQVGRVEDLLKLLEKMLSKQK--C--RTAYNQVIENLCSFGYLEEAGKILGKVLRT---ASKADAST--CH 621 (701)
Q Consensus 551 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~--~~ 621 (701)
++..++..|.+.|+++.|.+.|.++..... . ...+..+++.+...+++..+...+.++... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456677788888888888888888776522 2 456677777777888888888888776443 22222211 11
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHh
Q 037695 622 VLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
..+..+...+++..|...|-.+..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 112234556777777777766655
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.05 E-value=14 Score=37.22 Aligned_cols=98 Identities=16% Similarity=-0.029 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHH--H
Q 037695 481 NFTSLIRGFCQKGDLEEALSLLDDMYLCKK--DPDTVTYTTIIDALSKNGRVEEATELMMKMLSK---GLVPTVVTY--R 553 (701)
Q Consensus 481 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~--~ 553 (701)
+...+...|.+.|+++.|.+.|.++...-. ..-...+..++..+...+++..+...+.+.... +-.|+.... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556678888888888888888888875322 223456677777788888888888887776542 222322211 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 037695 554 TVIHRYCQVGRVEDLLKLLEKMLSK 578 (701)
Q Consensus 554 ~l~~~~~~~g~~~~A~~~~~~~~~~ 578 (701)
.-+..+...+++..|.+.|-.+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1112233567777777777666544
No 266
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=76.69 E-value=11 Score=30.28 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=35.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 037695 428 ACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLI 486 (701)
Q Consensus 428 A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 486 (701)
...-++.+....+.|++.+....+++|-+.+|+..|.++|+-++.+ +.+...+|..++
T Consensus 72 lrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 72 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 3444455555566777777777777777777777777777766554 333344455444
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.98 E-value=29 Score=30.23 Aligned_cols=51 Identities=14% Similarity=0.110 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCCC---hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 037695 565 VEDLLKLLEKMLSKQKC---RTAYNQVIENLCSFGYLEEAGKILGKVLRTASKA 615 (701)
Q Consensus 565 ~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 615 (701)
..++..+|..|...+.- ...|...+..+...|++.+|..+|+..++.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555555555444322 3344444555555555555555555555544333
No 268
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=73.05 E-value=36 Score=29.68 Aligned_cols=57 Identities=11% Similarity=-0.075 Sum_probs=38.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 037695 595 FGYLEEAGKILGKVLRTASKA-DASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPD 651 (701)
Q Consensus 595 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 651 (701)
.++..++..+|..|...++.. -+..|...+..+...|++.+|..+|+.-++++-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 344667777777777666532 345566666777777777777777777777666664
No 269
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=66.91 E-value=1.3e+02 Score=31.73 Aligned_cols=51 Identities=20% Similarity=0.102 Sum_probs=27.0
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 559 YCQVGRVEDLLKLLEKMLSKQKC-RTAYNQVIENLCSFGYLEEAGKILGKVL 609 (701)
Q Consensus 559 ~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 609 (701)
..+.|+++.|...|+.|...... .....-+++++...|+.++|..+|..+.
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 33456666666666655443222 2333445555555666666666665543
No 270
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.03 E-value=42 Score=25.28 Aligned_cols=78 Identities=15% Similarity=0.030 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 424 KLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLD 503 (701)
Q Consensus 424 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 503 (701)
..++|..+-+-+...+. ...+-.+-+..+...|++++|..+.+.. +.||...|-+|.. .+.|-.+++..-+.
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 92 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLA 92 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555544432 1111112223345556666665544322 3455555544433 35555555555555
Q ss_pred HHHhCC
Q 037695 504 DMYLCK 509 (701)
Q Consensus 504 ~~~~~~ 509 (701)
++..+|
T Consensus 93 ~la~sg 98 (115)
T 2uwj_G 93 GLGGSS 98 (115)
T ss_dssp HHHTCS
T ss_pred HHHhCC
Confidence 555444
No 271
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=64.42 E-value=44 Score=25.24 Aligned_cols=78 Identities=15% Similarity=0.046 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 037695 424 KLSEACDVVREMVKKGFFPTPVEINLLIQSLCREGKMDGAKKFMQECLNKGCAVNVVNFTSLIRGFCQKGDLEEALSLLD 503 (701)
Q Consensus 424 ~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 503 (701)
..++|..+-+-+...+. ...+-.+-+..+...|++++|..+.+.. +.||...|-+|.. .+.|-.+++..-+.
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~ 93 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLN 93 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHH
Confidence 44555555555554432 1111122233345566666666554432 3555555554433 34555555555555
Q ss_pred HHHhCC
Q 037695 504 DMYLCK 509 (701)
Q Consensus 504 ~~~~~~ 509 (701)
++..+|
T Consensus 94 ~la~sg 99 (116)
T 2p58_C 94 RLARSQ 99 (116)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 555444
No 272
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=62.26 E-value=48 Score=24.98 Aligned_cols=51 Identities=12% Similarity=0.141 Sum_probs=26.2
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037695 488 GFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKG 544 (701)
Q Consensus 488 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (701)
.+...|++++|..+.+.+ ..||...|..|.. .+.|-.+++..-+.++..+|
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 445556666665555444 3555555544432 35555555555555555444
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=61.65 E-value=61 Score=26.81 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 636 AYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 636 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
+.++|+.|..+++--. ...|...+..+...|++++|.++|+.-++.+-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 5556666666555433 35555666666666666666666666666543
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=61.51 E-value=50 Score=24.93 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=26.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 037695 488 GFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRVEEATELMMKMLSKG 544 (701)
Q Consensus 488 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 544 (701)
.+...|++++|..+.+.+ ..||...|..|.. .+.|-.+++..-+.++...|
T Consensus 49 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 445556666666655544 3555555554432 34555555555555554444
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.92 E-value=59 Score=27.33 Aligned_cols=47 Identities=9% Similarity=0.090 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 636 AYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 636 A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
+.++|..|..+++--. ...|...+..+-..|++.+|.++|..-++.+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3444555555444322 2444455555555555555555555555544
No 276
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=57.68 E-value=79 Score=26.54 Aligned_cols=52 Identities=10% Similarity=-0.112 Sum_probs=30.0
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH
Q 037695 601 AGKILGKVLRTASKA-DASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL 652 (701)
Q Consensus 601 A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 652 (701)
+..+|..|...++-. -+..|...+..+...|++.+|.++|+..++++-.|-.
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 445566665555422 3445555556666666666666666666666666543
No 277
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=57.41 E-value=81 Score=26.07 Aligned_cols=55 Identities=9% Similarity=-0.029 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHh
Q 037695 599 EEAGKILGKVLRTASKA-DASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLK 653 (701)
Q Consensus 599 ~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 653 (701)
.++..+|..+...++-. -+..|...+..+...|++.+|.++|+..++++-.|-..
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 34889999998887743 46678888889999999999999999999998888653
No 278
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=52.87 E-value=1.4e+02 Score=27.39 Aligned_cols=136 Identities=8% Similarity=-0.013 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChhHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 037695 532 EATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQKCRTAYNQVIENLCSFG-YLEEAGKILGKVLR 610 (701)
Q Consensus 532 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 610 (701)
.+...+..+.. .++...-...+.++...|+.+ +...+..++. +++...-...+.++...| ....+...+..++.
T Consensus 128 ~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~~~~~~~~L~~~l~ 202 (280)
T 1oyz_A 128 KIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK-DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQ 202 (280)
T ss_dssp HHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT-CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc-CCCHHHHHHHHHHHHhhccCcHHHHHHHHHHhc
Confidence 34444444433 345555555555665555422 3444444443 344444344444444443 22344444544443
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 037695 611 TASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDLKLCKKVSERLILEGKSEEADTLMLRFVERG 682 (701)
Q Consensus 611 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 682 (701)
.++..+-...+.++...|+. .++..+..+.+. |+ +....+.++.+.|. .++...+.++.+..
T Consensus 203 ---d~~~~vR~~A~~aL~~~~~~-~~~~~L~~~l~d---~~--vr~~a~~aL~~i~~-~~~~~~L~~~l~~~ 264 (280)
T 1oyz_A 203 ---DKNEEVRIEAIIGLSYRKDK-RVLSVLCDELKK---NT--VYDDIIEAAGELGD-KTLLPVLDTMLYKF 264 (280)
T ss_dssp ---CSCHHHHHHHHHHHHHTTCG-GGHHHHHHHHTS---SS--CCHHHHHHHHHHCC-GGGHHHHHHHHTTS
T ss_pred ---CCCHHHHHHHHHHHHHhCCH-hhHHHHHHHhcC---cc--HHHHHHHHHHhcCc-hhhhHHHHHHHhcC
Confidence 45666666666777777754 344444444442 22 33344556666666 46777777776654
No 279
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=49.49 E-value=93 Score=28.04 Aligned_cols=22 Identities=23% Similarity=0.036 Sum_probs=12.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 037695 485 LIRGFCQKGDLEEALSLLDDMY 506 (701)
Q Consensus 485 ll~~~~~~g~~~~A~~~~~~~~ 506 (701)
-++.+....++++|..++++..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~ 45 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIE 45 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3455555666666666655543
No 280
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=48.03 E-value=1.6e+02 Score=26.86 Aligned_cols=58 Identities=9% Similarity=0.029 Sum_probs=33.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHH
Q 037695 484 SLIRGFCQKGDLEEALSLLDDMYLCK--KDPDTVTYTTIIDALS-KNGRVEEATELMMKML 541 (701)
Q Consensus 484 ~ll~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~ 541 (701)
.++...-+.++++++...++++.+.+ ...+..-.+.|-.+|- ..|....+++++..+.
T Consensus 13 ~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissie 73 (260)
T 1o9d_A 13 YMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIE 73 (260)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 34555666777777777777777655 5556666666655553 2344445555555443
No 281
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=47.92 E-value=56 Score=29.01 Aligned_cols=49 Identities=6% Similarity=-0.005 Sum_probs=25.9
Q ss_pred hHHHHHHHHHhCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 037695 635 LAYKVACRMFNRNLIPD-LKLCKKVSERLILEGKSEEADTLMLRFVERGH 683 (701)
Q Consensus 635 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 683 (701)
.+..+|..|..+++--. ...|...+..|...|++++|.++|+.-++.+-
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 44455555555554333 24555555555555555555555555555543
No 282
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=47.60 E-value=1.6e+02 Score=26.47 Aligned_cols=57 Identities=7% Similarity=-0.024 Sum_probs=32.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Q 037695 484 SLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSK-NGRVEEATELMMKM 540 (701)
Q Consensus 484 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m 540 (701)
.++...-+.++++++...++++.+.+...+..-.+.|-.+|-. .|....+++++..+
T Consensus 10 ~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissi 67 (234)
T 2br9_A 10 YQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSI 67 (234)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3455556667777777777777665555666666666555532 23334445554443
No 283
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=46.60 E-value=1.6e+02 Score=26.56 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHh---CCCCCCHhhHHHHHHH-----HHhcCCHHHHHHHHHHHHHc
Q 037695 634 LLAYKVACRMFN---RNLIPDLKLCKKVSER-----LILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 634 ~~A~~~~~~~~~---~~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~ 681 (701)
+.|...|+.+.+ ..+.|..++...++-- |--.++.++|..+-+++.+.
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~ 203 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDD 203 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445556655543 2466666555444332 22478899998887777654
No 284
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=46.16 E-value=41 Score=30.93 Aligned_cols=18 Identities=11% Similarity=0.084 Sum_probs=8.8
Q ss_pred HHHHHHhCCCcHHHHHHH
Q 037695 147 MLEILSKTKLCQGAKRVL 164 (701)
Q Consensus 147 l~~~~~~~~~~~~a~~~~ 164 (701)
.+...++.|+.+.+..++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 344455556655444443
No 285
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=44.85 E-value=3.1e+02 Score=29.14 Aligned_cols=80 Identities=10% Similarity=0.004 Sum_probs=37.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---
Q 037695 345 VVNGFCRVGELDQAKKMLQQMYHHGCKPNTVSYTAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRR--- 421 (701)
Q Consensus 345 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 421 (701)
...++.-.|+++.|...+-.. ...+.+.+...+.-| |-+.....++..-. + .| ...+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~---gLL~~~~~lls~~~--~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASL---KLFKIDSSTRLTKK--P-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHT---TC---------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHc---CCccCCCcccccCC--C-cc-cccHHHHHHHHHHHhh
Confidence 344556678888888877644 133444444433332 32221111111000 0 11 3346667777765
Q ss_pred cCCHHHHHHHHHHH
Q 037695 422 EGKLSEACDVVREM 435 (701)
Q Consensus 422 ~g~~~~A~~~~~~m 435 (701)
..+..+|++.|-.+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 56777777776655
No 286
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=43.93 E-value=1.6e+02 Score=25.47 Aligned_cols=142 Identities=11% Similarity=-0.059 Sum_probs=77.6
Q ss_pred CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037695 139 HDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAI 218 (701)
Q Consensus 139 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 218 (701)
++...-...+..+++.+..+....+.. +.. .++...-...+.++.+.+..... ..+..+.. .++...-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIK-ALK---DEDAWVRRAAADALGQIGDERAV-EPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHH-HHc---CCCHHHHHHHHHHHHhhCCHHHH-HHHHHHHc---CCCHHHHHHHH
Confidence 344455555566666665333333333 332 24666666677777777764333 33333332 46667777777
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC
Q 037695 219 HVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKR 296 (701)
Q Consensus 219 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~ 296 (701)
.++.+.|..+ +...+..+.. .++..+-...+.++.+.|..+ +...+..+.. .++...-...+.++.+.+.
T Consensus 103 ~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 172 (211)
T 3ltm_A 103 VALGQIGDER-AVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG 172 (211)
T ss_dssp HHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc
Confidence 7777777644 3333334442 456666666677777776643 3444444443 3455555556666666554
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.38 E-value=2.9e+02 Score=28.27 Aligned_cols=65 Identities=14% Similarity=0.130 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH--HHH-HHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 037695 515 VTYTTIIDALSKNGRVEEATELMMKMLSK-GLVPTV--VTY-RTVIHRYCQVGRVEDLLKLLEKMLSKQ 579 (701)
Q Consensus 515 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~ 579 (701)
..+|.+++.|...+.++.|..+..+..-- .-.++. ..| ..+...+.-.+++.+|.+.+..+...-
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 34555666666666666666666554310 000111 111 122344445556666666555555443
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=42.26 E-value=2.3e+02 Score=27.34 Aligned_cols=75 Identities=9% Similarity=0.055 Sum_probs=43.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHHhCCCCCCHhhHHHHHH
Q 037695 585 YNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI--PLLAYKVACRMFNRNLIPDLKLCKKVSE 660 (701)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 660 (701)
...++.-|...|+.++|.+.++++-.-. -....+...+..++-+.++ .+...+++..+...++.+...+...+..
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~-fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~ 296 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYER 296 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTT-CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCc-chHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 4667788888888888888888873211 1112333344444444333 2346677777777777655444443333
No 289
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=42.03 E-value=1.5e+02 Score=26.59 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHh---CCCCCCHhhHHHHHHH-----HHhcCCHHHHHHHHHHHHHc
Q 037695 634 LLAYKVACRMFN---RNLIPDLKLCKKVSER-----LILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 634 ~~A~~~~~~~~~---~~~~p~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~~ 681 (701)
+.|.+.|+.+.+ ..+.|..++...++-- |--.++.++|..+-+++.+.
T Consensus 150 e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~ 205 (236)
T 3iqu_A 150 DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDE 205 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445566665544 2467766555544432 22578999999888877654
No 290
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=41.17 E-value=1.7e+02 Score=25.01 Aligned_cols=174 Identities=9% Similarity=-0.035 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 037695 139 HDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAI 218 (701)
Q Consensus 139 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 218 (701)
++...-...+..+.+.+.......+.+.+.. ++...-...+.++.+.+..+....+...+. .++...-...+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~----~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~----d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKALKD----EDAWVRRAAADALGQIGDERAVEPLIKALK----DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHTTC----SSHHHHHHHHHHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHcC----CCHHHHHHHHHHHHhhCCHHHHHHHHHHHc----CCCHHHHHHHH
Q ss_pred HHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChh
Q 037695 219 HVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIK 298 (701)
Q Consensus 219 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~ 298 (701)
.++.+.+..+....+...+. .++..+-...+.++.+.+..+....+...+. .++...-...+.++.+.|..+
T Consensus 98 ~aL~~~~~~~~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~----d~~~~vr~~A~~aL~~~~~~~ 169 (201)
T 3ltj_A 98 VALGQIGDERAVEPLIKALK----DEDWFVRIAAAFALGEIGDERAVEPLIKALK----DEDGWVRQSAADALGEIGGER 169 (201)
T ss_dssp HHHHHHCCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTT----CSSHHHHHHHHHHHHHHCSHH
T ss_pred HHHHHhCcHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHHhCchh
Q ss_pred HHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 037695 299 EVRDLMEKMVNDSNLFHDQGRIEEAKELVNQMSQMGCIPDVVTYTAVVNGFCRVGEL 355 (701)
Q Consensus 299 ~a~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 355 (701)
....+...+.. ++...-...+.++.+....
T Consensus 170 ~~~~L~~~l~d---------------------------~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 170 VRAAMEKLAET---------------------------GTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHHHHHHHHHH---------------------------CCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHhC---------------------------CCHHHHHHHHHHHHHHHhh
No 291
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=41.05 E-value=2.1e+02 Score=26.06 Aligned_cols=48 Identities=8% Similarity=-0.033 Sum_probs=29.1
Q ss_pred hhHHHHHHHHHh---CCCCCCHhhHHHHHHHH-----HhcCCHHHHHHHHHHHHHc
Q 037695 634 LLAYKVACRMFN---RNLIPDLKLCKKVSERL-----ILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 634 ~~A~~~~~~~~~---~~~~p~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~ 681 (701)
+.|.+.|+.+.+ ..+.|..++...++--+ --.++.++|..+-+++.+.
T Consensus 173 e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~ 228 (261)
T 3ubw_A 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDD 228 (261)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345556655543 34667665554443322 2478999999888877664
No 292
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=37.77 E-value=3.3e+02 Score=27.32 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=9.3
Q ss_pred CCHHHHHHHHHHHHhCCCCC
Q 037695 528 GRVEEATELMMKMLSKGLVP 547 (701)
Q Consensus 528 g~~~~A~~~~~~m~~~~~~p 547 (701)
++.+.|+.++.+|.+.|..|
T Consensus 269 sd~daAl~~la~ml~~Gedp 288 (447)
T 3pvs_A 269 SAPDAALYWYARIITAGGDP 288 (447)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 44444444444444444333
No 293
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=37.71 E-value=1.8e+02 Score=24.47 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=26.9
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCchHH
Q 037695 653 KLCKKVSERLILEGKSEEADTLMLRFVERGHIQPKSEE 690 (701)
Q Consensus 653 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 690 (701)
-.+..++..+.+.|+.+||+.++..-....+.-+++..
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEn 152 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVEN 152 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHH
Confidence 45666777777888888888888777777665555543
No 294
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=36.32 E-value=97 Score=27.50 Aligned_cols=51 Identities=10% Similarity=0.018 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC
Q 037695 600 EAGKILGKVLRTASKA-DASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIP 650 (701)
Q Consensus 600 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 650 (701)
.+..+|..|...++.. -...|...+..+...|++.+|..+|+.-++++-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4444555554444422 23344445555555555555555555555554444
No 295
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=35.26 E-value=1.1e+02 Score=25.58 Aligned_cols=68 Identities=12% Similarity=0.020 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCC
Q 037695 123 VALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARR--GIECRPEAFSYLMVAYSRAGK 191 (701)
Q Consensus 123 ~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~li~~~~~~g~ 191 (701)
.++.-+....+..|.+.++ --..++..+...+..-.|.++++.+.+. +...+..|.-.-+..+...|-
T Consensus 15 ~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3444444444455555544 3344555555555566666666666655 444455554455555555553
No 296
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=34.04 E-value=3.5e+02 Score=27.15 Aligned_cols=111 Identities=10% Similarity=0.074 Sum_probs=68.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 037695 110 QICAVLRSQADERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRA 189 (701)
Q Consensus 110 ~~~~~l~~~~~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~ 189 (701)
.+--++...++++.|+++-. +.|+|=--..|..-.+.+...|++++|.++-..-.+ |+-.++.|.+.+-..=...
T Consensus 334 ivpyi~~~l~n~~lA~~lA~----R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~p 408 (494)
T 1bpo_A 334 IIPYITNVLQNPDLALRMAV----RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQP 408 (494)
T ss_dssp HHHHHHHTTCCHHHHHHHHH----HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCT
T ss_pred chhhhhhccCCHHHHHHHHH----hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCC
Confidence 34455566789999988743 345565556788888889999999999888765543 4555777766555544444
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 037695 190 GKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNK 226 (701)
Q Consensus 190 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 226 (701)
|+..--+.+|..+...| ..+..----+++.....|+
T Consensus 409 gq~splL~YF~~Ll~~g-~Ln~~ESlEl~r~vL~q~r 444 (494)
T 1bpo_A 409 GQTSPLLQYFGILLDQG-QLNKYESLELCRPVLQQGR 444 (494)
T ss_dssp TSCCHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHhccC-ccchHHhhHHhHHHHhccH
Confidence 55555666666665554 3443333333333333333
No 297
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.89 E-value=1.6e+02 Score=25.83 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=20.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCChh
Q 037695 556 IHRYCQVGRVEDLLKLLEKMLSKQKCRT 583 (701)
Q Consensus 556 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 583 (701)
+-.|.+.|.+++|.+++++.....++..
T Consensus 121 V~VCiek~~f~kA~eiLkr~~~~~~s~~ 148 (235)
T 3bu8_A 121 VIICIKNKEFEKASKILKKHMSKDPTTQ 148 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHSTTCGGGH
T ss_pred HHHHHHhcchHHHHHHHHHHhcCCCCch
Confidence 3457778888888888888877665543
No 298
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=33.64 E-value=64 Score=29.56 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=22.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHHHHH
Q 037695 345 VVNGFCRVGELDQAKKMLQQMYHHGCKPNTV---SYTAFLNGLCHNGKSLEAREM 396 (701)
Q Consensus 345 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~ 396 (701)
.+...++.|+++.+..++ +.|..++.. .-.+.+...+..|+.+-+..+
T Consensus 8 ~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 58 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELL 58 (285)
T ss_dssp HHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHH
Confidence 344556677765544443 444333321 112334444556665444333
No 299
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=33.17 E-value=2.4e+02 Score=24.45 Aligned_cols=37 Identities=16% Similarity=0.250 Sum_probs=20.9
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037695 491 QKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNG 528 (701)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 528 (701)
+..+.+.|+-.+-+|++.| .|....-..++.+.-..|
T Consensus 26 RGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 3456666666666666666 555555455554444444
No 300
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=33.03 E-value=2.9e+02 Score=28.15 Aligned_cols=74 Identities=9% Similarity=0.002 Sum_probs=46.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCChhHHHHHHHHHHh
Q 037695 520 IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLS-KQKCRTAYNQVIENLCS 594 (701)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~p~~~~~~~l~~~~~~ 594 (701)
|.+.......+..|...|.+..... |-+...|+.|+-.....|+.-+|.-.|-+.+. ..|-+.+...+...+.+
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~-P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhC-CCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 3333444556778888888877753 44566777777777767776666655554443 35556677766666554
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.72 E-value=1.5e+02 Score=30.41 Aligned_cols=65 Identities=9% Similarity=0.049 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH--HHH-HHHHHHHHhcCChhhHHHHHHHHHhC
Q 037695 582 RTAYNQVIENLCSFGYLEEAGKILGKVLRTAS-KADA--STC-HVLVESYLNKGIPLLAYKVACRMFNR 646 (701)
Q Consensus 582 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~ 646 (701)
...++.+++.|...+.+++|..+..+..--.. .++. ..| ..++..+..++++.+|.+.+..+..+
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44566777777777777777777776631100 0111 111 23455666677777777777666653
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=32.64 E-value=1.9e+02 Score=23.01 Aligned_cols=95 Identities=16% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 037695 483 TSLIRGFCQKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNGRV--EEATELMMKMLSKGLVPTVVTYRTVIHRYC 560 (701)
Q Consensus 483 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 560 (701)
+.++.-|...|+.++|.+.++++.... -....+...+..++-+.+.. +.+..++..+...|+-+.......+...+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~Gf~~v~~ 89 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYN 89 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHh
Q ss_pred hcCCHH----HHHHHHHHHHhc
Q 037695 561 QVGRVE----DLLKLLEKMLSK 578 (701)
Q Consensus 561 ~~g~~~----~A~~~~~~~~~~ 578 (701)
...+.. .|..++.++...
T Consensus 90 ~l~Dl~lDiP~a~~~l~~~v~~ 111 (129)
T 2nsz_A 90 EIPDINLDVPHSYSVLERFVEE 111 (129)
T ss_dssp HHHHHHHHSTTHHHHHHHHHHH
T ss_pred hChHhhcCccchHHHHHHHHHH
No 303
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=30.94 E-value=79 Score=27.93 Aligned_cols=16 Identities=19% Similarity=-0.114 Sum_probs=6.9
Q ss_pred HHHHhcCChhHHHHHH
Q 037695 254 KGYCDLHRIKDAIKLI 269 (701)
Q Consensus 254 ~~~~~~g~~~~A~~~~ 269 (701)
...+..|+.+-+.-++
T Consensus 47 ~~A~~~~~~~~v~~Ll 62 (240)
T 3eu9_A 47 HWAAINNRIDLVKYYI 62 (240)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHH
Confidence 3444455544433333
No 304
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=30.76 E-value=2.7e+02 Score=24.19 Aligned_cols=33 Identities=12% Similarity=0.047 Sum_probs=15.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 037695 387 NGKSLEAREMINTSEEEWWTPNAITYSVVMHGLR 420 (701)
Q Consensus 387 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~ 420 (701)
..+.+.|+-++.+|++.| .|....-..++.+.-
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsE 59 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYE 59 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Confidence 345555555555555555 444444444444433
No 305
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.42 E-value=1.6e+02 Score=25.84 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=7.8
Q ss_pred HHHhcCChhHHHHHHHH
Q 037695 255 GYCDLHRIKDAIKLIDE 271 (701)
Q Consensus 255 ~~~~~g~~~~A~~~~~~ 271 (701)
..+..|+.+-+..+++.
T Consensus 85 ~A~~~~~~~~~~~Ll~~ 101 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDS 101 (241)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 33445555444444443
No 306
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.12 E-value=2.7e+02 Score=24.10 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=21.1
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037695 491 QKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNG 528 (701)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 528 (701)
+..+.+.|+-.+-+|++.|-.|..+.-..++.+.-..|
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34566666666666666665555554444444444333
No 307
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=30.11 E-value=2.5e+02 Score=24.27 Aligned_cols=33 Identities=6% Similarity=-0.173 Sum_probs=16.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 037695 387 NGKSLEAREMINTSEEEWWTPNAITYSVVMHGL 419 (701)
Q Consensus 387 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 419 (701)
..+.+.|+-.+.+|++.|..|..+.-..++.+.
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~As 52 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIAS 52 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 355555666666666555444444444444443
No 308
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=30.09 E-value=3.6e+02 Score=25.50 Aligned_cols=26 Identities=15% Similarity=0.047 Sum_probs=15.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHh
Q 037695 620 CHVLVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 620 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+...+....+.+++..|-.+.+++++
T Consensus 210 Lr~AM~~a~K~KNy~tAa~fArrLLe 235 (325)
T 3mv2_A 210 LQVAMSQHFKHKNFLQASYFAGEFLK 235 (325)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 33444555666666666666666666
No 309
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.67 E-value=2.1e+02 Score=23.18 Aligned_cols=44 Identities=11% Similarity=0.151 Sum_probs=19.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 037695 147 MLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAG 190 (701)
Q Consensus 147 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 190 (701)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 27 Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 27 ILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 33344444444444555555544443334444444444444443
No 310
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.22 E-value=5.7e+02 Score=28.66 Aligned_cols=108 Identities=11% Similarity=0.068 Sum_probs=66.4
Q ss_pred HHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC--Cc-HHHHHHHHH
Q 037695 252 LIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVNDSNLFHDQ--GR-IEEAKELVN 328 (701)
Q Consensus 252 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--g~-~~~a~~~~~ 328 (701)
++..+...|..+-|.++...+. -+...-..+..+|...|++++|..+|++.-. ++.... .. ......++.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-----~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~--gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-----SSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--TTCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHhh--hcccCcccccchhhhhhccC
Confidence 5556666777776665543333 3444445678889999999999999988642 332221 21 122333333
Q ss_pred HHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 329 QMSQMGCIPDVVTYTAVVNGFCRVGELDQAKKMLQQMYHH 368 (701)
Q Consensus 329 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 368 (701)
.... ......-|..++..+-+.+-++.+.++-+..+..
T Consensus 889 ~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 889 KYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp HTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 2211 1122346788888888888888888888777764
No 311
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=29.03 E-value=1.7e+02 Score=25.73 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=25.3
Q ss_pred HHHHHccCCHhHHHHHHHHHHhCCCCCChHH--HHHHHHHHHhcCChhHHHHH
Q 037695 218 IHVLVVGNKLAKALRFLERMQLAGITPNVLT--YNCLIKGYCDLHRIKDAIKL 268 (701)
Q Consensus 218 l~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~g~~~~A~~~ 268 (701)
+...+..|+.+.+..+++.+...|..++... -...+...+..|+.+-+..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 65 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHH
Confidence 4444556676666666666555554443221 11233444556665443333
No 312
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=29.00 E-value=3.3e+02 Score=24.78 Aligned_cols=58 Identities=9% Similarity=0.058 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 037695 484 SLIRGFCQKGDLEEALSLLDDMYLCK---KDPDTVTYTTIIDALSK-NGRVEEATELMMKML 541 (701)
Q Consensus 484 ~ll~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m~ 541 (701)
.++...-+.++++++...++++.+.+ ...+..-.+.|-.+|-. .|....+++++..+.
T Consensus 33 ~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissie 94 (260)
T 2npm_A 33 YMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVE 94 (260)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 34555666777777777777777655 55666666666666532 344445555554443
No 313
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=28.78 E-value=1.7e+02 Score=27.65 Aligned_cols=70 Identities=9% Similarity=0.066 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--hhhHHHHHHHHHhCCCCCCHhhH
Q 037695 585 YNQVIENLCSFGYLEEAGKILGKVLRTASKADASTCHVLVESYLNKGI--PLLAYKVACRMFNRNLIPDLKLC 655 (701)
Q Consensus 585 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~p~~~~~ 655 (701)
...++.-|...|+.++|.+.++++..-... ...+...+..++-+.++ .+....++..+.+.|+.+...+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~ 240 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMK 240 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 456677777778888888888776311001 11222333333333322 23445666666666665444333
No 314
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.53 E-value=1.5e+02 Score=24.10 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=26.6
Q ss_pred hcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 037695 133 RQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAG 190 (701)
Q Consensus 133 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 190 (701)
+..|.++++. -..++..+...+ .-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 11 ~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 11 RQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3344444432 223344444444 4455556655555554445555444444444444
No 315
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=28.53 E-value=1.3e+02 Score=20.03 Aligned_cols=36 Identities=14% Similarity=0.273 Sum_probs=29.4
Q ss_pred HHHHHhhhcCCCHHHHHHHHhcC-CChHHHHHHHHHH
Q 037695 96 EGELRNLLRSLKPRQICAVLRSQ-ADERVALQFFYWA 131 (701)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~l~~~-~~~~~Al~~f~~~ 131 (701)
...|+..++.++...+..+|..+ ++.+.|+..+..+
T Consensus 13 l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~m 49 (59)
T 1wgl_A 13 LKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQM 49 (59)
T ss_dssp HHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHHS
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 35566779999999999999875 8899999987654
No 316
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=28.31 E-value=3e+02 Score=24.06 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=29.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCCH
Q 037695 387 NGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRREGK-----LSEACDVVREMVKKGFFPTP 444 (701)
Q Consensus 387 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-----~~~A~~~~~~m~~~~~~~~~ 444 (701)
..+.+.|+-++.+|++.|..|....-..++.+.-..|. ...|...++.....|.+--.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~ 110 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGL 110 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTH
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHH
Confidence 35566666666666666555554444444444433332 23344445555555644333
No 317
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=27.60 E-value=3.6e+02 Score=25.72 Aligned_cols=23 Identities=13% Similarity=0.262 Sum_probs=11.1
Q ss_pred HHHHHHHHccCCHhHHHHHHHHH
Q 037695 215 NTAIHVLVVGNKLAKALRFLERM 237 (701)
Q Consensus 215 ~~ll~~~~~~g~~~~A~~~~~~m 237 (701)
..++.-|...|+.++|...++++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el 37 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQEL 37 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 34444444455555554444444
No 318
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=27.15 E-value=2.6e+02 Score=23.28 Aligned_cols=49 Identities=0% Similarity=-0.254 Sum_probs=26.5
Q ss_pred CCcHHHHHHHHHHHHcCCCC--CHHHHHHHHH------HHHHcCChhHHHHHHHHHH
Q 037695 155 KLCQGAKRVLRLMARRGIEC--RPEAFSYLMV------AYSRAGKLRNAMYVLSMMQ 203 (701)
Q Consensus 155 ~~~~~a~~~~~~m~~~~~~~--~~~~~~~li~------~~~~~g~~~~A~~~~~~~~ 203 (701)
|++=+|-++|+.+-+....+ ....|..||+ ...+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 66666666666665543333 3344444444 1234566666666666654
No 319
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=25.75 E-value=1.7e+02 Score=24.19 Aligned_cols=94 Identities=11% Similarity=0.103 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 037695 378 TAFLNGLCHNGKSLEAREMINTSEEEWWTPNAITYSVVMHGLRR--EGKLSEACDVVREMVKKGFFPTPVEINLLIQSLC 455 (701)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~~~ 455 (701)
..++.-|...|+.++|...++++... .-....+...+..++-+ ....+.+..++..+...++-+.......+...+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p-~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~Gf~~vl~ 91 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVP-HFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIYN 91 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHH
Q ss_pred hcCC----HHHHHHHHHHHHH
Q 037695 456 REGK----MDGAKKFMQECLN 472 (701)
Q Consensus 456 ~~g~----~~~a~~~~~~~~~ 472 (701)
...+ ...|..++..+..
T Consensus 92 ~ldDl~lDiP~A~~~la~~v~ 112 (152)
T 2ion_A 92 EIPDINLDVPHSYSVLERFVE 112 (152)
T ss_dssp HHHHHHHHSTTHHHHHHHHHH
T ss_pred hChHhccCccchHHHHHHHHH
No 320
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=25.67 E-value=1e+02 Score=22.77 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=11.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHH
Q 037695 654 LCKKVSERLILEGKSEEADTLM 675 (701)
Q Consensus 654 ~~~~l~~~~~~~g~~~~A~~~~ 675 (701)
.+...+..+++.|+|++|++..
T Consensus 17 ~~~RrAe~ll~~gkydeAIech 38 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCH 38 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHH
Confidence 3344455555555555555433
No 321
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.20 E-value=4e+02 Score=29.97 Aligned_cols=128 Identities=10% Similarity=0.024 Sum_probs=60.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-hhHHHHHHHHHHhcC
Q 037695 520 IIDALSKNGRVEEATELMMKMLSKGLVPTVVTYRTVIHRYCQVGRVEDLLKLLEKMLSKQ--KC-RTAYNQVIENLCSFG 596 (701)
Q Consensus 520 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~-~~~~~~l~~~~~~~g 596 (701)
++..|...|.++-|.++. . -++.++..-..+..+|...|++++|..+|+++-.-- +. ....
T Consensus 816 l~~~L~~~~~~~~a~eL~----~-~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~----------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----G-WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV----------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----G-GCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGG-----------
T ss_pred HHHHHHHhcHHHHHHHHH----h-hcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccc-----------
Confidence 445555666665544322 1 123344443445666777777777777776653210 00 0000
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH----hhHHHHHHHHHhcC
Q 037695 597 YLEEAGKILGKVLRTASKADASTCHVLVESYLNKGIPLLAYKVACRMFNRNLIPDL----KLCKKVSERLILEG 666 (701)
Q Consensus 597 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g 666 (701)
......++... + .......-|..++..+-+.+-++-+++..+.++..--.-|. ..+..+.++.+..|
T Consensus 880 -~~~~~~ll~~~-e-~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 -LREFQEIAEKY-H-HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -GHHHHHHHHHT-T-TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -hhhhhhccCcc-c-ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 00001111100 0 00111235666777777777777777777777763211121 45555555555443
No 322
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=24.75 E-value=91 Score=27.50 Aligned_cols=13 Identities=8% Similarity=-0.013 Sum_probs=6.1
Q ss_pred HHHHHhcCCHHHH
Q 037695 346 VNGFCRVGELDQA 358 (701)
Q Consensus 346 i~~~~~~g~~~~a 358 (701)
+...+..|+.+-+
T Consensus 46 L~~A~~~~~~~~v 58 (240)
T 3eu9_A 46 LHWAAINNRIDLV 58 (240)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHhCCHHHH
Confidence 3344555555433
No 323
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=24.56 E-value=71 Score=31.92 Aligned_cols=47 Identities=6% Similarity=-0.016 Sum_probs=22.2
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 037695 628 LNKGIPLLAYKVACRMFNRNLIPDLK--LCKKVSERLILEGKSEEADTLMLRFV 679 (701)
Q Consensus 628 ~~~g~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~ 679 (701)
...|+. ++.+.+++.|..|+.. .-...+..-.+.|. .+..++++...
T Consensus 352 ~~~g~~----~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~-~~~~~~l~~~~ 400 (437)
T 1n11_A 352 AQQGHT----DIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY-ISVTDVLKVVT 400 (437)
T ss_dssp HHTTCH----HHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC-HHHHHHHHHHC
T ss_pred HHCChH----HHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCc-HHHHHHHHhcc
Confidence 345654 3555566777766531 01111122233444 45566665554
No 324
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=24.44 E-value=2e+02 Score=28.92 Aligned_cols=60 Identities=10% Similarity=0.126 Sum_probs=28.8
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCCCCH---------hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 037695 622 VLVESYLNKGIPLLAYKVACRMFNRNLIPDL---------KLCKKVSERLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 622 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~---------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 681 (701)
.|...|.+.|+...+..+++.+...+..|+. .....++..++-.+++.+|.+.+..+.+.
T Consensus 181 ~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 181 KLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 3444455555555555444444333332211 22224455555566666666666666555
No 325
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=24.20 E-value=3.6e+02 Score=23.57 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=23.6
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 037695 491 QKGDLEEALSLLDDMYLCKKDPDTVTYTTIIDALSKNG 528 (701)
Q Consensus 491 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 528 (701)
+..+.+.|+-.+-+|++.|-.|....-..++.+.-.-|
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIG 84 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIG 84 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 45667777777777777766665555555555554444
No 326
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=23.48 E-value=2.7e+02 Score=22.69 Aligned_cols=69 Identities=3% Similarity=0.023 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 037695 121 ERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAG 190 (701)
Q Consensus 121 ~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 190 (701)
....+.-+....+..|.+.++ --..++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 7 m~~~~~~~~~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 7 LESILERLRMSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHHHHHHHHHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
No 327
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=23.18 E-value=4e+02 Score=23.78 Aligned_cols=32 Identities=16% Similarity=0.014 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 037695 278 SPDKVSYYTVMGYLCKEKRIKEVRDLMEKMVN 309 (701)
Q Consensus 278 ~pd~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 309 (701)
.++.......+..+.+.|+.+.|.++|-....
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHHHH
Confidence 34555566667777788888888877766544
No 328
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=23.07 E-value=3e+02 Score=22.23 Aligned_cols=62 Identities=8% Similarity=0.052 Sum_probs=41.8
Q ss_pred HHHHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCh
Q 037695 235 ERMQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRI 297 (701)
Q Consensus 235 ~~m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~ 297 (701)
+.+.+.|+.++. .-..++..+...+..-.|.++++.+.+.+...+..|..-.+..+...|-+
T Consensus 11 ~~l~~~g~r~T~-qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITP-QRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCH-HHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345566766553 34455566666677778888888888776666777777777777776644
No 329
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=22.40 E-value=7e+02 Score=26.23 Aligned_cols=98 Identities=11% Similarity=0.003 Sum_probs=55.3
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 037695 120 DERVALQFFYWADRQWRYRHDPIVYYMMLEILSKTKLCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAGKLRNAMYVL 199 (701)
Q Consensus 120 ~~~~Al~~f~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 199 (701)
.+.....|.. +.++.|.....-+.-+..+++.+++.....++.. .+.+...-.....+....|+..+|....
T Consensus 54 ~~~ev~~Fl~---~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~ 125 (618)
T 1qsa_A 54 PAVTVTNFVR---ANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGA 125 (618)
T ss_dssp CHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHH---HCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 3444444433 4444444334445556667777776666554432 2446666666677777777776666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCC
Q 037695 200 SMMQKAAVAPNLLICNTAIHVLVVGNK 226 (701)
Q Consensus 200 ~~~~~~~~~~~~~~~~~ll~~~~~~g~ 226 (701)
..+-..| ...+..|..++..+.+.|.
T Consensus 126 ~~lW~~~-~~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 126 KELWLTG-KSQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHSCS-SCCCTHHHHHHHHHHHTTC
T ss_pred HHHHhCC-CCCcHHHHHHHHHHHHCCC
Confidence 6665544 3445566666666665554
No 330
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=22.38 E-value=3.7e+02 Score=22.98 Aligned_cols=111 Identities=8% Similarity=-0.089 Sum_probs=62.5
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhCCCCCChHHHHHHH
Q 037695 174 CRPEAFSYLMVAYSRAGKLRNAMYVLSMMQKAAVAPNLLICNTAIHVLVVGNKLAKALRFLERMQLAGITPNVLTYNCLI 253 (701)
Q Consensus 174 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li 253 (701)
++...-...+..+.+.|.......+.+ +.. .++...-...+.++.+.+..+. ...+..+.. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~-~l~---~~~~~vr~~a~~aL~~~~~~~~-~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIK-ALK---DEDAWVRRAAADALGQIGDERA-VEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HTT---CSCHHHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHH-HHc---CCCHHHHHHHHHHHHhhCCHHH-HHHHHHHHc---CCCHHHHHHHH
Confidence 566776777777777776433333333 333 4566667777777777766433 333333332 45666666667
Q ss_pred HHHHhcCChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCC
Q 037695 254 KGYCDLHRIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKR 296 (701)
Q Consensus 254 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~ 296 (701)
.++.+.++.+. ...+..+.. .++...-...+.++.+.|.
T Consensus 103 ~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 103 VALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGD 141 (211)
T ss_dssp HHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCC
Confidence 77777776443 333333332 3455555555666665554
No 331
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=22.35 E-value=2.4e+02 Score=23.33 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=13.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHh
Q 037695 623 LVESYLNKGIPLLAYKVACRMFN 645 (701)
Q Consensus 623 l~~~~~~~g~~~~A~~~~~~~~~ 645 (701)
+-|.|.-.|++++|+.++..+-+
T Consensus 79 ~YWIyiGRg~~~eAlDiA~~L~D 101 (161)
T 2ynq_A 79 LYWIYIGRSQSEEALELARTIED 101 (161)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHTC
T ss_pred HHHHHHcCCchHHHHHHHHhcCc
Confidence 44556666666666666655533
No 332
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.17 E-value=2.7e+02 Score=22.14 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=25.8
Q ss_pred CCCCCCHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 037695 135 WRYRHDPIVYYMMLEILSKTK-LCQGAKRVLRLMARRGIECRPEAFSYLMVAYSRAG 190 (701)
Q Consensus 135 ~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g 190 (701)
.|.+.++ .-..++..+...+ ..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 12 ~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 12 AGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp TTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 3444443 2233444444444 45555555555555544445555444444444444
No 333
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=21.95 E-value=43 Score=21.26 Aligned_cols=19 Identities=0% Similarity=-0.083 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHhCCCCCC
Q 037695 633 PLLAYKVACRMFNRNLIPD 651 (701)
Q Consensus 633 ~~~A~~~~~~~~~~~~~p~ 651 (701)
...|+++++++.+.|-.|.
T Consensus 9 v~RaiELle~lq~sgevp~ 27 (53)
T 1zl8_A 9 VQRILELMEHVQKTGEVNN 27 (53)
T ss_dssp HHHHHHHHHHHGGGSSSTH
T ss_pred HHHHHHHHHHHHHcCCCCc
Confidence 4455555555555444433
No 334
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=21.86 E-value=3.5e+02 Score=22.53 Aligned_cols=55 Identities=7% Similarity=-0.067 Sum_probs=31.6
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCC--CHhhHHHHHH------HHHhcCCHHHHHHHHHHHHHc
Q 037695 627 YLNKGIPLLAYKVACRMFNRNLIP--DLKLCKKVSE------RLILEGKSEEADTLMLRFVER 681 (701)
Q Consensus 627 ~~~~g~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~~ 681 (701)
+...|++-+|-++++.+-.....| ....+..++. ...+.|++.-|..++.++...
T Consensus 42 lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 42 LYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444477777777777666544344 3344444444 123467777777777777553
No 335
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=21.36 E-value=79 Score=28.62 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=32.8
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHH--HcCChhHHHHHHHHHH
Q 037695 148 LEILSKTKLCQGAKRVLRLMARRGIECRPEA-------FSYLMVAYS--RAGKLRNAMYVLSMMQ 203 (701)
Q Consensus 148 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~li~~~~--~~g~~~~A~~~~~~~~ 203 (701)
+...++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcc
Confidence 4445667888887778777777665554322 233333322 4577766666666543
No 336
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=21.13 E-value=6.2e+02 Score=25.20 Aligned_cols=33 Identities=18% Similarity=0.042 Sum_probs=19.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 037695 421 REGKLSEACDVVREMVKKGFFPTPVEINLLIQS 453 (701)
Q Consensus 421 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~li~~ 453 (701)
+.++.+.|+..+..|++.|..|....-..+..+
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a 299 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIA 299 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 456777788888888777755543333333333
No 337
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=21.10 E-value=2e+02 Score=24.01 Aligned_cols=68 Identities=12% Similarity=0.137 Sum_probs=44.7
Q ss_pred HHHHHHHH-HHhCCCCCChHHHHHHHHHHHhcCChhHHHHHHHHchhC--CCCCCHHHHHHHHHHHHHcCCh
Q 037695 229 KALRFLER-MQLAGITPNVLTYNCLIKGYCDLHRIKDAIKLIDEMPLK--GCSPDKVSYYTVMGYLCKEKRI 297 (701)
Q Consensus 229 ~A~~~~~~-m~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd~~~~~~ll~~~~~~g~~ 297 (701)
.+++-+.+ +.+.|+.++. .-..++..+...+..-.|.++++.+.+. +...+..|...-+..+...|-+
T Consensus 15 ~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 15 VLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 33433333 3445666543 4556667777777788888888888876 6666777766667777776654
No 338
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.85 E-value=3.1e+02 Score=21.83 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=36.8
Q ss_pred HHhCCCCCChHHHHHHHHHHHhcC-ChhHHHHHHHHchhCCCCCCHHHHHHHHHHHHHcCCh
Q 037695 237 MQLAGITPNVLTYNCLIKGYCDLH-RIKDAIKLIDEMPLKGCSPDKVSYYTVMGYLCKEKRI 297 (701)
Q Consensus 237 m~~~g~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~pd~~~~~~ll~~~~~~g~~ 297 (701)
+.+.|+.++. .-..++..+...+ ..-.|.++++.+.+.+...+..|..--+..+...|-+
T Consensus 9 l~~~g~r~T~-qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTL-PRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCH-HHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4456655543 3344555565555 6677888888887776666666666666666666543
No 339
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=20.71 E-value=2.2e+02 Score=26.16 Aligned_cols=13 Identities=0% Similarity=-0.082 Sum_probs=5.7
Q ss_pred HHHHhCCCCCCHH
Q 037695 538 MKMLSKGLVPTVV 550 (701)
Q Consensus 538 ~~m~~~~~~p~~~ 550 (701)
+.+.+.|..++..
T Consensus 212 ~~Ll~~gad~~~~ 224 (285)
T 3kea_A 212 QALFKYDINIYSA 224 (285)
T ss_dssp HHHTTSCBCSTTT
T ss_pred HHHHHcCCCCCCC
Confidence 3344445444433
No 340
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=20.54 E-value=37 Score=30.97 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=31.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHH--hcCCHHHHHHHHHHH
Q 037695 346 VNGFCRVGELDQAKKMLQQMYHHGCKPNTVS-------YTAFLNGLC--HNGKSLEAREMINTS 400 (701)
Q Consensus 346 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~li~~~~--~~g~~~~A~~~~~~~ 400 (701)
+...++.|+.+....+++.+...|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3445667888877777777777665554332 234443332 456666665555543
No 341
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.40 E-value=6.6e+02 Score=25.16 Aligned_cols=62 Identities=10% Similarity=0.107 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHchhCCCCCC--------HHHHHH-HHHHHHHcCChhHHHHHHHHHHh
Q 037695 248 TYNCLIKGYCDLHRIKDAIKLIDEMPLKGCSPD--------KVSYYT-VMGYLCKEKRIKEVRDLMEKMVN 309 (701)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--------~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~ 309 (701)
..|.|.+.|.+.|+...|..+++.+...+..|+ .++|.- +...++..+++.+|.+.+.....
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 457778888888888888888888876654222 234443 33455678888888877766655
Done!