BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037696
         (363 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1T2K|C Chain C, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
           Jun Bound To Dna
          Length = 62

 Score = 32.0 bits (71), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 234 LANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQ 278
           + NR +A +SR RKL+ I+ LE  V TL+ + S L+     L  Q
Sbjct: 8   MRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ 52


>pdb|1JNM|A Chain A, Crystal Structure Of The JunCRE COMPLEX
 pdb|1JNM|B Chain B, Crystal Structure Of The JunCRE COMPLEX
 pdb|2H7H|A Chain A, Crystal Structure Of The Jun Bzip Homodimer Complexed With
           Ap-1 Dna
 pdb|2H7H|B Chain B, Crystal Structure Of The Jun Bzip Homodimer Complexed With
           Ap-1 Dna
 pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes
 pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes
          Length = 62

 Score = 32.0 bits (71), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 234 LANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQ 278
           + NR +A +SR RKL+ I+ LE  V TL+ + S L+     L  Q
Sbjct: 7   MRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ 51


>pdb|1A02|J Chain J, Structure Of The Dna Binding Domains Of Nfat, Fos And Jun
           Bound To Dna
          Length = 56

 Score = 31.6 bits (70), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 25/43 (58%)

Query: 236 NRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQ 278
           NR +A +SR RKL+ I+ LE  V TL+ + S L+     L  Q
Sbjct: 10  NRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ 52


>pdb|3A5T|A Chain A, Crystal Structure Of Mafg-Dna Complex
 pdb|3A5T|B Chain B, Crystal Structure Of Mafg-Dna Complex
          Length = 107

 Score = 30.4 bits (67), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 27/52 (51%)

Query: 222 DTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVA 273
           + II  K+ +R L NR  A   RV+++    ELE+    LQ EV  L+   A
Sbjct: 31  EEIIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENA 82


>pdb|1DH3|A Chain A, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
           Basis For Creb Faimly Selective Dimerization And Dna
           Binding
 pdb|1DH3|C Chain C, Crystal Structure Of A Creb Bzip-Cre Complex Reveals The
           Basis For Creb Faimly Selective Dimerization And Dna
           Binding
          Length = 55

 Score = 30.0 bits (66), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSAL 268
           KR  R++ NR++A+ SR +K +Y+  LE  V  L+ +   L
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTL 41


>pdb|1YSA|C Chain C, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
           Of Uninterrupted Alpha Helices: Crystal Structure Of The
           Protein-Dna Complex
 pdb|1YSA|D Chain D, The Gcn4 Basic Region Leucine Zipper Binds Dna As A Dimer
           Of Uninterrupted Alpha Helices: Crystal Structure Of The
           Protein-Dna Complex
          Length = 58

 Score = 29.3 bits (64), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 275
           DP  +KR   N ++A+RSR RKLQ + +LE  V  L ++   L   VA L
Sbjct: 3   DPAALKRA-RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 51


>pdb|2DGC|A Chain A, Gcn4 Basic Domain, Leucine Zipper Complexed With AtfCREB
           Site Dna
          Length = 63

 Score = 29.3 bits (64), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 275
           DP  +KR   N ++A+RSR RKLQ + +LE  V  L ++   L   VA L
Sbjct: 8   DPAALKRA-RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 56


>pdb|1LD4|E Chain E, Placement Of The Structural Proteins In Sindbis Virus
 pdb|1LD4|F Chain F, Placement Of The Structural Proteins In Sindbis Virus
 pdb|1LD4|G Chain G, Placement Of The Structural Proteins In Sindbis Virus
 pdb|1LD4|H Chain H, Placement Of The Structural Proteins In Sindbis Virus
 pdb|1LD4|I Chain I, Placement Of The Structural Proteins In Sindbis Virus
 pdb|1LD4|J Chain J, Placement Of The Structural Proteins In Sindbis Virus
 pdb|1LD4|K Chain K, Placement Of The Structural Proteins In Sindbis Virus
 pdb|1LD4|L Chain L, Placement Of The Structural Proteins In Sindbis Virus
          Length = 57

 Score = 29.3 bits (64), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 275
           DP  +KR   N ++A+RSR RKLQ + +LE  V  L ++   L   VA L
Sbjct: 2   DPAALKRA-RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 50


>pdb|1DGC|A Chain A, The X-Ray Structure Of The Gcn4-Bzip Bound To AtfCREB SITE
           Dna Shows The Complex Depends On Dna Flexibility
          Length = 62

 Score = 29.3 bits (64), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 275
           DP  +KR   N ++A+RSR RKLQ + +LE  V  L ++   L   VA L
Sbjct: 7   DPAALKRA-RNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARL 55


>pdb|3TQ2|A Chain A, Merohedral Twinning In Protein Crystals Revealed A New
           Synthetic Three Helix Bundle Motif
          Length = 36

 Score = 28.1 bits (61), Expect = 8.8,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 264 EVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298
           +VSAL  +V+ L  Q L+L    SALK++++AL +
Sbjct: 2   KVSALKEKVSALKEQFLMLMFKVSALKEKVSALKE 36


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,198,919
Number of Sequences: 62578
Number of extensions: 138792
Number of successful extensions: 325
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 314
Number of HSP's gapped (non-prelim): 11
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)