BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037696
(363 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9MA75|VIP1_ARATH Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1
Length = 341
Score = 98.6 bits (244), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 71/186 (38%), Positives = 95/186 (51%), Gaps = 13/186 (6%)
Query: 169 DEKVTAPSDQQQQQKQQQQQPKNE-PGEVESSCKNNE---PSSSQTTTHQTPPASNGD-- 222
+EK A S ++++ N GE+ S+ N E S S + + GD
Sbjct: 128 EEKFIATSSGEKKKGNHHHSRSNSMDGEMSSASFNIESILASVSGKDSGKKNMGMGGDRL 187
Query: 223 ---TIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQR 279
++DPKR KRILANRQSA RS+ RK++Y ELER V TLQ E + LS +V L
Sbjct: 188 AELALLDPKRAKRILANRQSAARSKERKIRYTGELERKVQTLQNEATTLSAQVTMLQRGT 247
Query: 280 LILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNIKKMKNNNNSNNNA 339
LN +N LK R+ AL Q +DA EAL+ E+ RL+ V + + N NS N A
Sbjct: 248 SELNTENKHLKMRLQALEQQAELRDALNEALRDELNRLKVVAGEIP----QGNGNSYNRA 303
Query: 340 TPPPQQ 345
QQ
Sbjct: 304 QFSSQQ 309
>sp|Q6S4P4|RF2B_ORYSJ Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b
PE=1 SV=1
Length = 329
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/94 (52%), Positives = 65/94 (69%)
Query: 225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNV 284
IDPKR KRILANRQSA RS+ RK +YI+ELER V TLQTE + LS ++ L+
Sbjct: 131 IDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSA 190
Query: 285 DNSALKQRIAALAQDKIFKDAHQEALKKEIERLR 318
+N+ LK R+ A+ Q +DA +ALK+E+ERL+
Sbjct: 191 ENAELKIRLQAMEQQAQLRDALNDALKQELERLK 224
>sp|Q69IL4|RF2A_ORYSJ Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a
PE=1 SV=1
Length = 380
Score = 95.1 bits (235), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 65/101 (64%)
Query: 223 TIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLIL 282
++DPKR KRI ANRQSA RS+ RK++YI+ELER V TLQTE + LS ++A L L
Sbjct: 178 ALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGL 237
Query: 283 NVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323
+NS LK R+ + Q +DA + LK E++RL+ Q
Sbjct: 238 TTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLKVATGQ 278
>sp|Q04088|POF21_ARATH Probable transcription factor PosF21 OS=Arabidopsis thaliana
GN=POSF21 PE=2 SV=1
Length = 398
Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 49/100 (49%), Positives = 64/100 (64%)
Query: 224 IIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILN 283
+IDPKR KRI ANRQSA RS+ RK +YI ELER V TLQTE + LS ++ L L
Sbjct: 199 LIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLT 258
Query: 284 VDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323
V+N+ LK R+ + Q +D EALK+EI+ L+ + Q
Sbjct: 259 VENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVLTGQ 298
>sp|Q54Y73|BZPD_DICDI Probable basic-leucine zipper transcription factor D
OS=Dictyostelium discoideum GN=bzpD PE=3 SV=1
Length = 834
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 216 PPASNGDTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 275
PP N + + K+ +R++ NR+SAQ SR+RK YI +LE++++ L + S+L V +L
Sbjct: 381 PPTHNQEDERNVKKQRRLIKNRESAQLSRMRKKIYIEDLEKTISDLTQDNSSLKEEVLYL 440
>sp|Q8W3M7|Y4598_ARATH Uncharacterized protein At4g06598 OS=Arabidopsis thaliana
GN=At4g06598 PE=2 SV=2
Length = 265
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 31/48 (64%), Gaps = 5/48 (10%)
Query: 216 PPASNGDTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQT 263
P A + + D KR A +Q AQRSRVRK+QYI+ELER+V LQ
Sbjct: 223 PLAKSATSEADTKR-----ARQQFAQRSRVRKIQYIAELERNVQMLQV 265
>sp|Q54WN7|BZPF_DICDI Probable basic-leucine zipper transcription factor F
OS=Dictyostelium discoideum GN=bzpF PE=3 SV=1
Length = 631
Score = 39.3 bits (90), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNS 287
KR +R++ NR++AQ R R+ YI +LE+ V+ L S RV +LN +N
Sbjct: 407 KRQRRLVKNREAAQLFRQRQKAYIQDLEKKVSDLTGTNSEFRARVE-------LLNSENK 459
Query: 288 ALKQRIAAL 296
+++++ L
Sbjct: 460 LIREQLLYL 468
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.121 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 135,885,669
Number of Sequences: 539616
Number of extensions: 5856751
Number of successful extensions: 265363
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1526
Number of HSP's successfully gapped in prelim test: 1277
Number of HSP's that attempted gapping in prelim test: 50562
Number of HSP's gapped (non-prelim): 76459
length of query: 363
length of database: 191,569,459
effective HSP length: 119
effective length of query: 244
effective length of database: 127,355,155
effective search space: 31074657820
effective search space used: 31074657820
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)