Query 037696
Match_columns 363
No_of_seqs 189 out of 795
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 03:31:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037696.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037696hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00338 BRLZ basic region l 99.4 2.4E-12 5.1E-17 98.3 9.7 62 225-286 2-63 (65)
2 PF00170 bZIP_1: bZIP transcri 99.3 1.6E-11 3.6E-16 93.6 9.4 62 226-287 3-64 (64)
3 KOG4005 Transcription factor X 99.2 6.2E-11 1.3E-15 113.0 12.2 76 225-300 66-141 (292)
4 KOG4343 bZIP transcription fac 99.1 1.1E-10 2.3E-15 120.8 7.3 69 223-291 273-344 (655)
5 PF07716 bZIP_2: Basic region 99.0 1.2E-09 2.5E-14 81.4 8.3 52 225-277 2-53 (54)
6 KOG0709 CREB/ATF family transc 98.9 1.1E-09 2.4E-14 111.8 6.4 67 225-298 248-314 (472)
7 KOG3584 cAMP response element 98.8 1.3E-08 2.8E-13 99.5 6.7 52 226-277 289-340 (348)
8 KOG0837 Transcriptional activa 98.1 8.6E-06 1.9E-10 78.9 7.9 53 226-278 203-256 (279)
9 PF03131 bZIP_Maf: bZIP Maf tr 98.0 6.2E-08 1.3E-12 79.2 -7.2 57 223-279 25-81 (92)
10 KOG4571 Activating transcripti 97.8 0.002 4.4E-08 63.5 18.6 58 218-275 216-274 (294)
11 KOG4196 bZIP transcription fac 97.2 0.003 6.4E-08 56.2 9.8 47 224-270 49-95 (135)
12 KOG3863 bZIP transcription fac 97.2 0.00066 1.4E-08 72.3 6.1 68 230-305 492-559 (604)
13 KOG3119 Basic region leucine z 96.9 0.0066 1.4E-07 58.7 9.5 54 222-275 188-241 (269)
14 PRK13169 DNA replication intia 96.6 0.0075 1.6E-07 52.0 7.3 75 249-324 8-82 (110)
15 PF06156 DUF972: Protein of un 96.4 0.016 3.5E-07 49.5 8.0 76 249-324 8-85 (107)
16 PF06005 DUF904: Protein of un 96.1 0.15 3.3E-06 40.9 11.5 51 249-299 4-54 (72)
17 PF11559 ADIP: Afadin- and alp 96.1 0.21 4.5E-06 43.7 13.2 86 238-323 41-126 (151)
18 PF14197 Cep57_CLD_2: Centroso 96.0 0.11 2.4E-06 41.3 10.3 60 253-319 2-61 (69)
19 PRK10884 SH3 domain-containing 95.7 0.19 4.2E-06 47.2 12.0 55 261-315 116-170 (206)
20 KOG1029 Endocytic adaptor prot 95.6 1.2 2.7E-05 49.8 19.2 26 3-28 90-120 (1118)
21 PF14197 Cep57_CLD_2: Centroso 95.5 0.17 3.6E-06 40.3 9.5 52 248-299 11-62 (69)
22 COG4467 Regulator of replicati 94.9 0.072 1.6E-06 46.4 6.1 46 250-295 9-54 (114)
23 PRK15422 septal ring assembly 94.9 0.45 9.8E-06 39.3 10.2 68 249-323 4-75 (79)
24 COG1579 Zn-ribbon protein, pos 94.7 1.7 3.7E-05 42.2 15.5 97 226-322 29-134 (239)
25 COG3074 Uncharacterized protei 94.6 0.71 1.5E-05 37.8 10.5 34 258-291 27-60 (79)
26 KOG4005 Transcription factor X 94.6 0.32 7E-06 47.6 10.2 83 223-305 68-153 (292)
27 PF05266 DUF724: Protein of un 94.5 1.7 3.8E-05 40.5 14.7 97 225-321 86-182 (190)
28 TIGR02449 conserved hypothetic 94.5 0.53 1.2E-05 37.4 9.5 46 251-296 2-47 (65)
29 PF12711 Kinesin-relat_1: Kine 94.3 0.68 1.5E-05 38.7 10.3 59 260-320 21-85 (86)
30 TIGR02449 conserved hypothetic 94.2 0.37 8E-06 38.3 8.2 46 251-296 9-54 (65)
31 PF14662 CCDC155: Coiled-coil 94.2 0.56 1.2E-05 44.3 10.6 69 250-322 9-77 (193)
32 PF07989 Microtub_assoc: Micro 94.1 0.74 1.6E-05 37.1 9.8 49 251-299 2-58 (75)
33 PRK11637 AmiB activator; Provi 94.1 1.2 2.7E-05 45.0 13.7 46 252-297 64-109 (428)
34 PF10186 Atg14: UV radiation r 94.0 3 6.5E-05 38.9 15.3 52 243-294 57-108 (302)
35 KOG4196 bZIP transcription fac 94.0 1.2 2.6E-05 40.1 11.8 68 248-323 46-113 (135)
36 PF08614 ATG16: Autophagy prot 93.9 0.31 6.7E-06 44.6 8.4 48 251-298 118-165 (194)
37 PF11559 ADIP: Afadin- and alp 93.4 4.5 9.7E-05 35.4 14.4 66 231-296 48-113 (151)
38 PRK09039 hypothetical protein; 93.4 2.9 6.2E-05 42.0 14.8 36 261-296 142-177 (343)
39 TIGR02894 DNA_bind_RsfA transc 93.2 0.89 1.9E-05 41.9 9.9 59 257-322 98-156 (161)
40 PF12325 TMF_TATA_bd: TATA ele 93.1 5 0.00011 35.1 13.9 44 282-325 73-116 (120)
41 PF08614 ATG16: Autophagy prot 93.0 1.8 4E-05 39.6 11.8 72 225-296 113-184 (194)
42 COG2433 Uncharacterized conser 93.0 1.1 2.3E-05 48.8 11.6 73 250-322 437-512 (652)
43 PRK13729 conjugal transfer pil 93.0 0.5 1.1E-05 49.8 9.0 46 250-295 77-122 (475)
44 PF10224 DUF2205: Predicted co 92.9 0.58 1.3E-05 38.5 7.5 48 251-298 18-65 (80)
45 PF10473 CENP-F_leu_zip: Leuci 92.7 7.3 0.00016 35.1 15.1 70 230-299 33-102 (140)
46 PF07888 CALCOCO1: Calcium bin 92.6 5.2 0.00011 43.1 16.1 95 232-326 354-459 (546)
47 PF12325 TMF_TATA_bd: TATA ele 92.5 2.5 5.5E-05 37.0 11.4 17 308-324 78-94 (120)
48 PRK11637 AmiB activator; Provi 92.5 4 8.6E-05 41.5 14.5 71 229-299 48-118 (428)
49 COG2433 Uncharacterized conser 92.4 2.9 6.4E-05 45.5 13.9 71 248-322 421-491 (652)
50 PF06005 DUF904: Protein of un 92.4 2.4 5.2E-05 34.1 10.2 36 259-294 21-56 (72)
51 PF10146 zf-C4H2: Zinc finger- 92.3 5.8 0.00013 38.2 14.6 81 245-325 28-109 (230)
52 PF04102 SlyX: SlyX; InterPro 92.3 0.71 1.5E-05 36.3 7.1 48 249-296 4-51 (69)
53 PF13747 DUF4164: Domain of un 92.2 3.4 7.3E-05 34.3 11.2 70 227-296 10-79 (89)
54 PF00038 Filament: Intermediat 92.0 9.6 0.00021 36.5 15.8 69 257-325 210-282 (312)
55 PF05911 DUF869: Plant protein 91.7 1.8 3.8E-05 48.2 11.7 74 250-323 93-208 (769)
56 PF04111 APG6: Autophagy prote 91.7 6 0.00013 39.3 14.4 80 240-319 55-134 (314)
57 COG3074 Uncharacterized protei 91.5 1.3 2.9E-05 36.2 7.8 67 249-322 4-74 (79)
58 PF14662 CCDC155: Coiled-coil 91.4 4.8 0.0001 38.2 12.6 47 252-298 98-144 (193)
59 TIGR03752 conj_TIGR03752 integ 91.4 1.4 3E-05 46.6 10.0 28 252-279 76-103 (472)
60 PRK02119 hypothetical protein; 91.4 1.3 2.8E-05 35.5 7.7 21 250-270 10-30 (73)
61 PF04880 NUDE_C: NUDE protein, 91.4 0.31 6.7E-06 44.9 4.8 52 251-306 2-53 (166)
62 KOG0250 DNA repair protein RAD 91.2 5.2 0.00011 46.0 14.8 86 240-325 370-456 (1074)
63 PF00769 ERM: Ezrin/radixin/mo 91.2 15 0.00032 35.4 16.1 67 257-323 55-121 (246)
64 PRK02793 phi X174 lysis protei 91.2 1.4 3.1E-05 35.1 7.7 27 249-275 8-34 (72)
65 PRK00295 hypothetical protein; 91.1 1.7 3.7E-05 34.3 8.0 30 250-279 6-35 (68)
66 PF10186 Atg14: UV radiation r 91.0 4.8 0.0001 37.6 12.3 48 251-298 58-105 (302)
67 PRK10884 SH3 domain-containing 90.8 5.1 0.00011 37.8 12.3 46 253-298 122-167 (206)
68 PF02183 HALZ: Homeobox associ 90.6 0.74 1.6E-05 34.0 5.2 39 260-298 2-40 (45)
69 PRK04325 hypothetical protein; 90.6 1.7 3.8E-05 34.8 7.8 27 250-276 10-36 (74)
70 PF09726 Macoilin: Transmembra 90.6 7.1 0.00015 43.1 14.9 34 242-275 481-514 (697)
71 PF07888 CALCOCO1: Calcium bin 90.5 11 0.00023 40.8 15.7 66 228-293 150-215 (546)
72 PF00038 Filament: Intermediat 90.5 14 0.00031 35.4 15.3 14 308-321 293-306 (312)
73 PRK00736 hypothetical protein; 90.5 1.9 4.1E-05 34.1 7.8 29 249-277 5-33 (68)
74 KOG4571 Activating transcripti 90.4 2.1 4.6E-05 42.8 9.7 44 267-324 245-288 (294)
75 PF11932 DUF3450: Protein of u 90.4 13 0.00028 35.3 14.7 44 254-297 54-97 (251)
76 PRK04406 hypothetical protein; 90.4 1.8 3.9E-05 35.0 7.7 23 253-275 8-30 (75)
77 PRK09039 hypothetical protein; 90.2 7.5 0.00016 39.0 13.6 64 252-315 119-182 (343)
78 TIGR02169 SMC_prok_A chromosom 90.1 10 0.00022 41.8 15.6 13 13-25 8-21 (1164)
79 PRK15422 septal ring assembly 90.0 2.1 4.6E-05 35.4 7.9 46 251-296 20-65 (79)
80 PF05837 CENP-H: Centromere pr 89.9 2.9 6.3E-05 35.4 8.9 66 256-322 3-68 (106)
81 PF05700 BCAS2: Breast carcino 89.8 7.1 0.00015 36.7 12.4 77 249-325 136-216 (221)
82 PF07106 TBPIP: Tat binding pr 89.8 2.5 5.4E-05 37.7 8.9 75 247-321 84-161 (169)
83 PHA02562 46 endonuclease subun 89.7 9.7 0.00021 39.2 14.3 6 115-120 129-134 (562)
84 PF12718 Tropomyosin_1: Tropom 89.7 5.4 0.00012 35.5 10.9 47 250-296 15-61 (143)
85 KOG0239 Kinesin (KAR3 subfamil 89.6 5.1 0.00011 43.9 12.8 69 251-319 243-314 (670)
86 PF10211 Ax_dynein_light: Axon 89.6 9.8 0.00021 35.3 12.9 41 251-291 122-162 (189)
87 TIGR03752 conj_TIGR03752 integ 89.5 5.9 0.00013 42.0 12.7 19 306-324 117-135 (472)
88 PF09726 Macoilin: Transmembra 89.3 9.4 0.0002 42.1 14.5 41 252-292 541-581 (697)
89 PRK13922 rod shape-determining 89.3 5.6 0.00012 37.9 11.5 45 277-325 69-113 (276)
90 PF03962 Mnd1: Mnd1 family; I 89.2 7.8 0.00017 35.9 11.9 79 240-322 74-152 (188)
91 KOG0982 Centrosomal protein Nu 89.2 7.3 0.00016 41.2 12.8 73 250-322 298-391 (502)
92 PF06785 UPF0242: Uncharacteri 89.1 8.9 0.00019 39.5 13.1 53 244-296 122-174 (401)
93 PF15290 Syntaphilin: Golgi-lo 89.1 2.9 6.3E-05 41.9 9.5 24 253-276 79-102 (305)
94 TIGR00219 mreC rod shape-deter 89.0 2.1 4.5E-05 41.9 8.5 44 279-325 68-111 (283)
95 PRK13169 DNA replication intia 88.9 3 6.5E-05 36.1 8.4 42 253-294 5-46 (110)
96 PF04156 IncA: IncA protein; 88.9 10 0.00022 34.0 12.2 12 309-320 162-173 (191)
97 PF08317 Spc7: Spc7 kinetochor 88.7 18 0.0004 35.7 14.9 26 58-83 10-44 (325)
98 PF09730 BicD: Microtubule-ass 88.6 4.7 0.0001 44.7 11.6 49 251-299 71-119 (717)
99 PF06156 DUF972: Protein of un 88.4 2.8 6E-05 36.0 7.9 44 253-296 5-48 (107)
100 PF15070 GOLGA2L5: Putative go 88.4 16 0.00034 40.0 15.2 29 236-264 109-137 (617)
101 COG4026 Uncharacterized protei 88.3 5.6 0.00012 39.1 10.7 47 251-297 137-190 (290)
102 PF12329 TMF_DNA_bd: TATA elem 88.3 11 0.00023 30.3 10.7 64 252-322 8-71 (74)
103 PF02403 Seryl_tRNA_N: Seryl-t 88.3 13 0.00029 30.6 12.4 82 235-316 9-99 (108)
104 PF08317 Spc7: Spc7 kinetochor 88.1 5.1 0.00011 39.6 10.6 9 313-321 277-285 (325)
105 KOG3119 Basic region leucine z 88.0 3.5 7.5E-05 40.2 9.3 65 246-324 191-255 (269)
106 PF07106 TBPIP: Tat binding pr 87.6 4.8 0.0001 35.9 9.2 43 251-298 81-123 (169)
107 PF13851 GAS: Growth-arrest sp 87.5 20 0.00042 33.6 13.5 49 228-276 72-120 (201)
108 PF06785 UPF0242: Uncharacteri 87.4 7.1 0.00015 40.2 11.2 83 229-315 76-172 (401)
109 PF15035 Rootletin: Ciliary ro 87.4 9 0.00019 35.6 11.1 59 247-305 65-123 (182)
110 PF04849 HAP1_N: HAP1 N-termin 87.3 5.2 0.00011 40.3 10.1 64 252-322 220-286 (306)
111 PF10805 DUF2730: Protein of u 87.2 7.4 0.00016 32.9 9.7 60 239-298 31-93 (106)
112 KOG0243 Kinesin-like protein [ 87.0 10 0.00022 43.8 13.2 89 232-320 414-512 (1041)
113 KOG1414 Transcriptional activa 86.8 0.036 7.7E-07 56.2 -5.3 55 221-275 147-205 (395)
114 PF04849 HAP1_N: HAP1 N-termin 86.8 7.4 0.00016 39.2 10.9 26 292-317 214-239 (306)
115 KOG0977 Nuclear envelope prote 86.8 16 0.00034 39.6 13.9 44 277-320 148-191 (546)
116 PRK00846 hypothetical protein; 86.7 4.7 0.0001 33.1 7.9 7 342-348 70-76 (77)
117 KOG0977 Nuclear envelope prote 86.5 15 0.00032 39.7 13.6 60 239-298 131-190 (546)
118 COG3883 Uncharacterized protei 86.5 10 0.00022 37.6 11.5 55 245-299 34-88 (265)
119 PF09755 DUF2046: Uncharacteri 85.7 22 0.00047 36.1 13.5 54 273-326 181-250 (310)
120 PF15035 Rootletin: Ciliary ro 85.5 13 0.00027 34.6 11.1 46 269-321 66-111 (182)
121 PRK00888 ftsB cell division pr 85.5 4.3 9.3E-05 34.5 7.4 34 265-298 29-62 (105)
122 PF04156 IncA: IncA protein; 85.5 15 0.00032 33.0 11.2 41 256-296 95-135 (191)
123 PRK04863 mukB cell division pr 85.3 22 0.00048 42.5 15.4 13 13-25 13-25 (1486)
124 TIGR03495 phage_LysB phage lys 85.1 14 0.0003 33.2 10.6 72 252-323 29-100 (135)
125 PF07798 DUF1640: Protein of u 85.0 8.1 0.00018 35.0 9.5 47 252-298 47-94 (177)
126 PF08581 Tup_N: Tup N-terminal 85.0 20 0.00043 29.4 12.3 72 249-324 4-76 (79)
127 PF15619 Lebercilin: Ciliary p 85.0 28 0.00062 32.6 13.2 39 284-322 150-188 (194)
128 PF10481 CENP-F_N: Cenp-F N-te 84.9 12 0.00026 37.6 11.2 94 229-322 19-126 (307)
129 PF15058 Speriolin_N: Sperioli 84.8 1.2 2.7E-05 42.2 4.2 45 272-316 7-51 (200)
130 KOG4807 F-actin binding protei 84.8 13 0.00028 39.3 11.7 80 245-324 389-493 (593)
131 PF10481 CENP-F_N: Cenp-F N-te 84.7 19 0.00042 36.2 12.4 55 261-322 79-133 (307)
132 TIGR00219 mreC rod shape-deter 84.6 2.2 4.8E-05 41.7 6.0 38 257-294 67-108 (283)
133 KOG0999 Microtubule-associated 84.6 11 0.00024 41.2 11.5 74 225-298 114-191 (772)
134 KOG4360 Uncharacterized coiled 84.3 12 0.00027 40.3 11.6 57 249-305 219-275 (596)
135 PF10473 CENP-F_leu_zip: Leuci 84.3 31 0.00068 31.1 14.9 14 248-261 23-36 (140)
136 PHA02562 46 endonuclease subun 84.1 55 0.0012 33.8 16.3 54 244-297 332-385 (562)
137 COG4026 Uncharacterized protei 84.0 9.3 0.0002 37.6 9.8 72 251-322 130-201 (290)
138 KOG1962 B-cell receptor-associ 84.0 19 0.00041 34.7 11.8 45 254-298 149-193 (216)
139 PF11932 DUF3450: Protein of u 84.0 39 0.00085 32.0 15.2 49 250-298 43-91 (251)
140 COG4467 Regulator of replicati 83.9 5.4 0.00012 35.0 7.4 46 254-299 6-51 (114)
141 PF09755 DUF2046: Uncharacteri 83.7 12 0.00027 37.7 10.9 42 252-293 23-64 (310)
142 PF10211 Ax_dynein_light: Axon 83.6 20 0.00044 33.2 11.5 56 258-319 122-177 (189)
143 PRK12704 phosphodiesterase; Pr 83.5 19 0.00041 38.3 12.7 19 278-296 132-150 (520)
144 KOG1029 Endocytic adaptor prot 83.3 15 0.00032 41.8 12.0 15 153-168 276-290 (1118)
145 PF15294 Leu_zip: Leucine zipp 83.3 7.6 0.00016 38.7 9.1 45 254-298 130-174 (278)
146 PRK02224 chromosome segregatio 83.2 23 0.00049 38.9 13.5 8 288-295 631-638 (880)
147 COG4942 Membrane-bound metallo 83.1 36 0.00078 35.8 14.2 71 228-298 38-108 (420)
148 TIGR02231 conserved hypothetic 82.7 19 0.00041 37.6 12.2 17 306-322 153-169 (525)
149 KOG4343 bZIP transcription fac 82.7 7.6 0.00016 42.1 9.3 36 264-299 303-338 (655)
150 KOG4643 Uncharacterized coiled 82.6 25 0.00053 40.9 13.6 94 224-324 369-462 (1195)
151 KOG0995 Centromere-associated 82.4 19 0.00042 39.1 12.3 46 249-294 280-325 (581)
152 PF12808 Mto2_bdg: Micro-tubul 82.4 4.1 8.9E-05 31.2 5.4 48 246-296 1-48 (52)
153 PRK10803 tol-pal system protei 82.4 9.5 0.00021 36.8 9.3 46 250-295 55-100 (263)
154 PRK13922 rod shape-determining 82.3 10 0.00022 36.2 9.3 34 260-293 73-109 (276)
155 COG1579 Zn-ribbon protein, pos 82.3 42 0.00092 32.8 13.5 55 245-299 85-139 (239)
156 KOG1265 Phospholipase C [Lipid 82.1 39 0.00084 39.1 14.7 74 226-299 1026-1104(1189)
157 PF08232 Striatin: Striatin fa 82.0 35 0.00075 30.2 11.9 59 268-326 9-67 (134)
158 smart00338 BRLZ basic region l 81.9 6.5 0.00014 29.9 6.4 25 272-296 28-52 (65)
159 PF04111 APG6: Autophagy prote 81.8 43 0.00094 33.3 13.8 46 251-296 45-90 (314)
160 PF05557 MAD: Mitotic checkpoi 81.8 19 0.00042 39.2 12.3 77 250-326 511-634 (722)
161 KOG0933 Structural maintenance 81.7 28 0.00061 40.4 13.6 71 251-321 789-859 (1174)
162 PRK02119 hypothetical protein; 81.6 13 0.00028 29.8 8.3 27 251-277 4-30 (73)
163 COG1196 Smc Chromosome segrega 81.5 43 0.00093 38.7 15.4 10 135-144 607-616 (1163)
164 PF04728 LPP: Lipoprotein leuc 81.2 18 0.00038 28.3 8.5 31 250-280 4-34 (56)
165 PRK02224 chromosome segregatio 81.1 47 0.001 36.5 15.0 10 116-125 129-138 (880)
166 PRK05431 seryl-tRNA synthetase 81.1 28 0.00061 35.9 12.6 69 249-317 28-99 (425)
167 KOG3650 Predicted coiled-coil 81.1 7 0.00015 34.1 7.0 45 254-298 61-105 (120)
168 PRK04406 hypothetical protein; 81.0 14 0.00031 29.8 8.3 33 249-281 11-43 (75)
169 PF01166 TSC22: TSC-22/dip/bun 80.7 2.9 6.3E-05 32.9 4.1 30 263-292 14-43 (59)
170 PF15254 CCDC14: Coiled-coil d 80.4 8.6 0.00019 43.2 9.0 59 260-318 391-468 (861)
171 PF14915 CCDC144C: CCDC144C pr 80.3 46 0.001 33.7 13.3 67 238-304 182-248 (305)
172 PF05529 Bap31: B-cell recepto 80.1 20 0.00043 32.6 10.0 39 282-320 152-190 (192)
173 PF15397 DUF4618: Domain of un 80.0 55 0.0012 32.4 13.5 61 239-299 71-135 (258)
174 KOG0995 Centromere-associated 79.7 59 0.0013 35.6 14.7 23 251-273 303-325 (581)
175 COG1196 Smc Chromosome segrega 79.5 62 0.0013 37.5 15.8 7 129-135 619-625 (1163)
176 TIGR02209 ftsL_broad cell divi 79.5 13 0.00028 29.2 7.6 39 261-299 22-60 (85)
177 KOG1414 Transcriptional activa 79.4 0.45 9.8E-06 48.4 -0.8 47 223-269 280-326 (395)
178 smart00787 Spc7 Spc7 kinetocho 79.1 74 0.0016 31.9 15.1 45 252-296 147-191 (312)
179 PF12718 Tropomyosin_1: Tropom 79.1 23 0.00049 31.6 9.8 44 253-296 25-68 (143)
180 PF12711 Kinesin-relat_1: Kine 79.0 7.5 0.00016 32.6 6.3 64 257-323 4-69 (86)
181 PF12329 TMF_DNA_bd: TATA elem 78.9 32 0.00069 27.6 10.1 52 247-298 10-61 (74)
182 PF09304 Cortex-I_coil: Cortex 78.8 45 0.00097 29.2 12.8 42 252-293 33-74 (107)
183 KOG4643 Uncharacterized coiled 78.7 11 0.00024 43.5 9.4 40 280-319 297-336 (1195)
184 PF08172 CASP_C: CASP C termin 78.5 28 0.00061 33.9 11.0 19 245-263 16-34 (248)
185 KOG4403 Cell surface glycoprot 78.4 17 0.00037 38.8 10.0 82 246-327 239-324 (575)
186 COG1340 Uncharacterized archae 78.2 51 0.0011 33.3 12.9 93 230-322 28-124 (294)
187 TIGR02894 DNA_bind_RsfA transc 78.2 18 0.00038 33.6 9.0 38 280-317 100-137 (161)
188 KOG0250 DNA repair protein RAD 77.9 63 0.0014 37.7 15.0 81 239-319 679-769 (1074)
189 KOG0946 ER-Golgi vesicle-tethe 77.9 19 0.0004 40.9 10.6 61 234-294 656-716 (970)
190 PF00170 bZIP_1: bZIP transcri 77.8 13 0.00028 28.3 6.9 27 272-298 28-54 (64)
191 PF15058 Speriolin_N: Sperioli 77.7 5.6 0.00012 37.9 5.8 40 251-298 7-46 (200)
192 KOG1103 Predicted coiled-coil 77.4 12 0.00027 38.9 8.6 66 237-302 226-291 (561)
193 PF06428 Sec2p: GDP/GTP exchan 77.3 3.1 6.7E-05 35.4 3.7 66 251-323 10-83 (100)
194 KOG2391 Vacuolar sorting prote 77.0 97 0.0021 32.2 17.9 11 135-145 129-139 (365)
195 PF06637 PV-1: PV-1 protein (P 77.0 52 0.0011 34.6 12.9 15 308-322 366-380 (442)
196 PF05791 Bacillus_HBL: Bacillu 76.9 32 0.00069 31.6 10.4 78 241-321 102-179 (184)
197 PF15030 DUF4527: Protein of u 76.7 78 0.0017 31.6 13.4 91 226-316 13-104 (277)
198 PF09789 DUF2353: Uncharacteri 76.6 34 0.00075 34.7 11.4 45 252-296 68-112 (319)
199 KOG0999 Microtubule-associated 76.5 25 0.00054 38.6 10.8 61 256-323 8-75 (772)
200 PF14817 HAUS5: HAUS augmin-li 76.2 45 0.00098 36.7 12.9 66 250-315 80-145 (632)
201 KOG0946 ER-Golgi vesicle-tethe 75.9 41 0.00089 38.4 12.6 48 249-296 650-697 (970)
202 COG3883 Uncharacterized protei 75.7 37 0.0008 33.7 11.0 66 252-323 48-113 (265)
203 PF07407 Seadorna_VP6: Seadorn 75.7 15 0.00032 37.9 8.5 29 260-290 36-64 (420)
204 PF13805 Pil1: Eisosome compon 75.6 29 0.00063 34.5 10.4 73 232-310 131-204 (271)
205 PF05103 DivIVA: DivIVA protei 75.5 1.6 3.6E-05 36.5 1.6 47 249-295 25-71 (131)
206 PF05667 DUF812: Protein of un 75.4 46 0.001 36.3 12.7 55 249-303 328-382 (594)
207 smart00787 Spc7 Spc7 kinetocho 75.3 95 0.002 31.2 14.8 14 59-72 7-20 (312)
208 PF06632 XRCC4: DNA double-str 75.3 50 0.0011 33.7 12.2 43 251-293 139-181 (342)
209 PF05483 SCP-1: Synaptonemal c 75.3 40 0.00087 37.7 12.1 66 257-322 588-653 (786)
210 KOG0161 Myosin class II heavy 75.2 44 0.00095 41.2 13.4 64 234-297 1645-1708(1930)
211 KOG1853 LIS1-interacting prote 75.2 98 0.0021 31.3 13.9 42 234-275 30-71 (333)
212 COG4942 Membrane-bound metallo 75.0 86 0.0019 33.1 14.0 66 235-300 38-103 (420)
213 TIGR00606 rad50 rad50. This fa 74.9 80 0.0017 37.0 15.2 63 234-296 842-907 (1311)
214 KOG1899 LAR transmembrane tyro 74.7 43 0.00094 37.4 12.1 85 233-317 129-217 (861)
215 PF04977 DivIC: Septum formati 74.7 16 0.00035 27.8 6.8 31 266-296 20-50 (80)
216 COG4372 Uncharacterized protei 74.6 90 0.002 33.2 13.9 53 238-290 126-178 (499)
217 PF10168 Nup88: Nuclear pore c 74.2 60 0.0013 36.1 13.4 14 57-70 390-403 (717)
218 PRK02793 phi X174 lysis protei 74.1 28 0.0006 27.8 8.1 26 252-277 4-29 (72)
219 KOG0976 Rho/Rac1-interacting s 73.8 36 0.00078 39.0 11.5 46 253-298 110-155 (1265)
220 KOG0933 Structural maintenance 73.7 96 0.0021 36.3 14.9 65 258-322 817-881 (1174)
221 TIGR00606 rad50 rad50. This fa 73.7 74 0.0016 37.3 14.6 73 247-322 879-951 (1311)
222 PF10805 DUF2730: Protein of u 73.3 52 0.0011 27.9 10.0 49 248-296 34-84 (106)
223 PF04871 Uso1_p115_C: Uso1 / p 73.3 44 0.00095 29.6 10.0 40 251-290 29-75 (136)
224 PF04102 SlyX: SlyX; InterPro 73.2 27 0.00059 27.4 7.8 23 254-276 2-24 (69)
225 PF06216 RTBV_P46: Rice tungro 73.1 19 0.00042 36.1 8.4 48 250-297 65-112 (389)
226 COG1792 MreC Cell shape-determ 73.0 23 0.0005 34.8 9.0 59 257-323 50-108 (284)
227 PF12795 MscS_porin: Mechanose 72.9 85 0.0018 29.6 12.8 71 257-327 151-221 (240)
228 PLN02320 seryl-tRNA synthetase 72.7 66 0.0014 34.5 12.8 91 223-316 65-162 (502)
229 PF08232 Striatin: Striatin fa 72.5 43 0.00094 29.6 9.7 46 253-298 15-60 (134)
230 TIGR03185 DNA_S_dndD DNA sulfu 72.4 89 0.0019 33.7 13.9 33 261-293 433-465 (650)
231 PRK04325 hypothetical protein; 72.4 29 0.00062 27.9 7.9 27 251-277 4-30 (74)
232 PF13851 GAS: Growth-arrest sp 72.3 86 0.0019 29.4 15.6 31 269-299 92-122 (201)
233 PF12777 MT: Microtubule-bindi 71.6 24 0.00051 35.2 8.9 62 254-315 233-294 (344)
234 PRK00106 hypothetical protein; 71.6 1.6E+02 0.0034 32.0 15.5 20 242-261 65-84 (535)
235 PF07716 bZIP_2: Basic region 71.2 12 0.00027 27.7 5.2 29 270-298 25-53 (54)
236 PF12709 Kinetocho_Slk19: Cent 71.2 21 0.00045 30.2 7.0 48 249-296 27-75 (87)
237 KOG0964 Structural maintenance 71.1 1.1E+02 0.0023 35.9 14.5 92 232-323 401-492 (1200)
238 PF05483 SCP-1: Synaptonemal c 71.0 1.1E+02 0.0024 34.5 14.2 101 226-326 86-190 (786)
239 KOG2991 Splicing regulator [RN 71.0 38 0.00083 34.1 9.9 20 307-326 287-306 (330)
240 PRK13729 conjugal transfer pil 71.0 27 0.00059 37.2 9.5 21 251-271 71-91 (475)
241 PF10168 Nup88: Nuclear pore c 71.0 1.1E+02 0.0023 34.2 14.3 8 136-143 413-420 (717)
242 KOG2129 Uncharacterized conser 70.9 13 0.00028 39.5 6.9 40 252-291 46-85 (552)
243 PF10234 Cluap1: Clusterin-ass 70.8 59 0.0013 32.3 11.2 68 252-322 172-242 (267)
244 PF10174 Cast: RIM-binding pro 70.6 87 0.0019 35.4 13.6 62 252-313 311-372 (775)
245 PRK00295 hypothetical protein; 70.2 36 0.00078 26.9 7.9 24 254-277 3-26 (68)
246 PF10226 DUF2216: Uncharacteri 70.2 1E+02 0.0023 29.5 13.5 36 288-323 105-140 (195)
247 PF10146 zf-C4H2: Zinc finger- 70.2 1.1E+02 0.0023 29.7 12.6 25 272-296 62-86 (230)
248 PF08172 CASP_C: CASP C termin 70.0 20 0.00043 34.9 7.7 50 238-296 84-133 (248)
249 PF14988 DUF4515: Domain of un 69.9 77 0.0017 30.0 11.4 48 272-319 151-198 (206)
250 PLN02678 seryl-tRNA synthetase 69.8 61 0.0013 34.1 11.7 89 226-318 14-105 (448)
251 KOG2077 JNK/SAPK-associated pr 69.7 23 0.00051 39.0 8.7 50 252-301 325-374 (832)
252 TIGR00414 serS seryl-tRNA synt 69.5 1.1E+02 0.0024 31.6 13.4 29 288-316 73-101 (418)
253 PF09325 Vps5: Vps5 C terminal 69.4 90 0.002 28.4 11.8 17 260-276 167-183 (236)
254 PRK00846 hypothetical protein; 69.3 39 0.00084 27.8 8.1 24 250-273 14-37 (77)
255 PF04999 FtsL: Cell division p 69.2 29 0.00063 28.1 7.4 40 261-300 33-72 (97)
256 PF13094 CENP-Q: CENP-Q, a CEN 69.2 55 0.0012 29.0 9.8 53 252-304 23-75 (160)
257 PRK05431 seryl-tRNA synthetase 69.0 72 0.0016 33.0 11.9 31 257-287 29-59 (425)
258 PF15619 Lebercilin: Ciliary p 68.8 1E+02 0.0023 28.9 13.8 87 238-324 7-115 (194)
259 cd07666 BAR_SNX7 The Bin/Amphi 68.7 1.2E+02 0.0026 29.6 13.0 75 230-314 151-227 (243)
260 PF14645 Chibby: Chibby family 68.7 17 0.00037 31.6 6.3 22 254-275 76-97 (116)
261 KOG2010 Double stranded RNA bi 68.6 25 0.00055 36.3 8.3 48 269-316 153-200 (405)
262 PF04871 Uso1_p115_C: Uso1 / p 68.3 87 0.0019 27.8 13.5 87 258-345 29-116 (136)
263 PF09738 DUF2051: Double stran 68.2 59 0.0013 32.7 10.7 30 256-285 105-134 (302)
264 PF02841 GBP_C: Guanylate-bind 68.0 1.2E+02 0.0027 29.5 14.9 13 306-318 285-297 (297)
265 PF07851 TMPIT: TMPIT-like pro 67.9 91 0.002 31.9 12.1 74 249-322 4-85 (330)
266 PF08537 NBP1: Fungal Nap bind 67.9 1.5E+02 0.0032 30.5 13.5 37 226-262 120-156 (323)
267 PF10224 DUF2205: Predicted co 67.9 49 0.0011 27.4 8.4 28 290-317 36-63 (80)
268 PRK00888 ftsB cell division pr 67.8 24 0.00052 30.0 6.9 27 249-275 34-60 (105)
269 KOG0161 Myosin class II heavy 67.8 1.2E+02 0.0026 37.7 14.8 10 312-321 1160-1169(1930)
270 KOG0980 Actin-binding protein 67.8 1.5E+02 0.0032 34.4 14.5 34 234-267 451-484 (980)
271 KOG1962 B-cell receptor-associ 67.8 20 0.00043 34.6 7.1 53 261-320 149-201 (216)
272 PF15294 Leu_zip: Leucine zipp 67.8 27 0.00058 34.9 8.2 52 273-324 128-179 (278)
273 PRK10698 phage shock protein P 67.7 1.1E+02 0.0025 29.0 12.8 54 251-304 101-154 (222)
274 PRK14127 cell division protein 67.7 39 0.00085 29.4 8.2 34 249-282 30-63 (109)
275 PRK10803 tol-pal system protei 67.7 49 0.0011 32.0 9.8 47 250-296 41-87 (263)
276 PF09738 DUF2051: Double stran 67.7 60 0.0013 32.6 10.6 74 248-322 83-164 (302)
277 KOG0980 Actin-binding protein 67.3 1.8E+02 0.0038 33.8 15.0 44 251-294 412-455 (980)
278 PF13935 Ead_Ea22: Ead/Ea22-li 67.3 31 0.00068 30.4 7.8 12 246-257 78-89 (139)
279 PF05667 DUF812: Protein of un 67.3 97 0.0021 33.9 12.9 36 282-317 445-480 (594)
280 KOG4797 Transcriptional regula 67.2 13 0.00028 32.8 5.2 30 262-291 66-95 (123)
281 smart00340 HALZ homeobox assoc 67.2 12 0.00025 28.0 4.2 27 272-298 7-33 (44)
282 COG2900 SlyX Uncharacterized p 66.9 36 0.00078 27.9 7.3 22 252-273 4-25 (72)
283 PF13870 DUF4201: Domain of un 66.7 97 0.0021 27.8 12.1 23 276-298 83-105 (177)
284 TIGR00414 serS seryl-tRNA synt 66.5 79 0.0017 32.7 11.6 6 329-334 106-111 (418)
285 KOG2264 Exostosin EXT1L [Signa 66.4 45 0.00097 37.0 10.0 43 249-291 93-135 (907)
286 PF07798 DUF1640: Protein of u 66.3 97 0.0021 28.1 10.9 11 309-319 142-152 (177)
287 PF11365 DUF3166: Protein of u 66.2 25 0.00053 30.1 6.6 33 283-322 14-46 (96)
288 PF14282 FlxA: FlxA-like prote 66.1 45 0.00097 28.2 8.2 21 250-270 20-40 (106)
289 TIGR02680 conserved hypothetic 66.0 1.6E+02 0.0034 35.1 15.1 60 237-297 265-324 (1353)
290 PF06810 Phage_GP20: Phage min 66.0 70 0.0015 28.9 9.9 10 278-287 59-68 (155)
291 PF00261 Tropomyosin: Tropomyo 65.8 1.2E+02 0.0027 28.6 13.9 6 233-238 82-87 (237)
292 PF02183 HALZ: Homeobox associ 65.8 29 0.00063 25.6 6.1 24 268-291 3-26 (45)
293 TIGR00998 8a0101 efflux pump m 65.8 63 0.0014 30.9 10.1 27 252-278 97-123 (334)
294 PRK01156 chromosome segregatio 65.7 2E+02 0.0043 32.0 15.2 7 316-322 740-746 (895)
295 KOG0288 WD40 repeat protein Ti 65.4 39 0.00085 35.8 9.1 46 251-296 29-74 (459)
296 PF04899 MbeD_MobD: MbeD/MobD 65.3 72 0.0016 25.8 10.1 46 254-299 12-57 (70)
297 PF05529 Bap31: B-cell recepto 65.1 58 0.0013 29.5 9.3 29 268-296 159-187 (192)
298 PF05622 HOOK: HOOK protein; 65.0 2.1 4.6E-05 46.4 0.0 61 238-298 314-377 (713)
299 PF05335 DUF745: Protein of un 64.7 1.3E+02 0.0028 28.4 12.5 37 245-281 63-99 (188)
300 TIGR03185 DNA_S_dndD DNA sulfu 64.7 74 0.0016 34.3 11.4 10 131-140 152-161 (650)
301 PF04340 DUF484: Protein of un 64.6 49 0.0011 30.8 8.9 49 250-302 41-89 (225)
302 PRK10361 DNA recombination pro 64.4 2.1E+02 0.0045 30.8 14.7 29 267-295 64-92 (475)
303 KOG4360 Uncharacterized coiled 64.4 1.5E+02 0.0033 32.4 13.4 57 255-318 246-302 (596)
304 PF07558 Shugoshin_N: Shugoshi 64.2 8 0.00017 28.6 2.9 33 261-293 12-44 (46)
305 PF06818 Fez1: Fez1; InterPro 64.2 83 0.0018 30.2 10.4 63 251-313 12-74 (202)
306 KOG4370 Ral-GTPase effector RL 64.1 21 0.00047 37.9 7.0 47 266-326 409-455 (514)
307 PF14988 DUF4515: Domain of un 63.9 82 0.0018 29.8 10.3 50 254-303 154-203 (206)
308 PF05278 PEARLI-4: Arabidopsis 63.7 1.2E+02 0.0025 30.4 11.6 25 275-299 212-236 (269)
309 PF02403 Seryl_tRNA_N: Seryl-t 63.6 37 0.0008 27.9 7.1 50 252-301 39-91 (108)
310 KOG4001 Axonemal dynein light 63.6 1.4E+02 0.0031 29.2 11.9 54 238-291 170-227 (259)
311 PRK00736 hypothetical protein; 63.5 58 0.0013 25.7 7.8 22 254-275 3-24 (68)
312 cd07627 BAR_Vps5p The Bin/Amph 63.5 1.1E+02 0.0024 28.5 11.0 38 232-269 98-135 (216)
313 PF10174 Cast: RIM-binding pro 63.3 1.2E+02 0.0025 34.4 12.9 53 271-323 358-410 (775)
314 PRK12705 hypothetical protein; 63.2 1.9E+02 0.0042 31.1 14.0 27 254-280 93-119 (508)
315 KOG0982 Centrosomal protein Nu 63.2 1.2E+02 0.0025 32.7 12.0 17 280-296 307-323 (502)
316 PHA03155 hypothetical protein; 63.2 76 0.0017 28.1 9.2 25 250-274 9-33 (115)
317 KOG4603 TBP-1 interacting prot 63.2 40 0.00087 32.1 7.9 19 254-272 91-109 (201)
318 PF00261 Tropomyosin: Tropomyo 63.0 1.4E+02 0.003 28.3 13.3 69 251-319 136-211 (237)
319 PF10212 TTKRSYEDQ: Predicted 62.9 71 0.0015 34.6 10.7 46 255-300 433-478 (518)
320 PF09744 Jnk-SapK_ap_N: JNK_SA 62.9 1.2E+02 0.0027 27.7 12.7 35 259-293 85-119 (158)
321 COG4372 Uncharacterized protei 62.9 1.8E+02 0.0038 31.1 13.2 91 233-323 128-228 (499)
322 KOG0804 Cytoplasmic Zn-finger 62.8 1.3E+02 0.0027 32.5 12.2 26 240-267 347-372 (493)
323 TIGR01069 mutS2 MutS2 family p 62.7 1.2E+02 0.0025 34.0 12.7 15 252-266 518-532 (771)
324 KOG0243 Kinesin-like protein [ 62.7 1.3E+02 0.0028 35.2 13.2 56 245-300 444-499 (1041)
325 TIGR02231 conserved hypothetic 62.6 1.5E+02 0.0033 31.0 12.9 44 268-318 129-172 (525)
326 COG2900 SlyX Uncharacterized p 62.5 57 0.0012 26.8 7.7 26 249-274 8-33 (72)
327 PRK01156 chromosome segregatio 62.5 2.6E+02 0.0055 31.2 15.3 9 62-70 37-45 (895)
328 TIGR02680 conserved hypothetic 62.4 2.2E+02 0.0048 33.9 15.5 44 236-279 869-912 (1353)
329 PF07926 TPR_MLP1_2: TPR/MLP1/ 62.4 1E+02 0.0023 26.6 10.5 70 254-323 1-70 (132)
330 PF11180 DUF2968: Protein of u 62.2 1.5E+02 0.0032 28.4 12.1 51 246-296 95-145 (192)
331 PF08647 BRE1: BRE1 E3 ubiquit 62.1 91 0.002 25.9 13.6 66 230-295 5-70 (96)
332 KOG0996 Structural maintenance 62.0 1.2E+02 0.0026 36.1 12.8 10 3-12 67-76 (1293)
333 TIGR01010 BexC_CtrB_KpsE polys 62.0 1.3E+02 0.0027 29.9 11.7 16 307-322 280-295 (362)
334 TIGR03495 phage_LysB phage lys 61.9 1.2E+02 0.0025 27.4 10.4 62 262-323 18-79 (135)
335 PF13166 AAA_13: AAA domain 61.9 2E+02 0.0043 30.8 13.9 50 251-300 405-454 (712)
336 PF14915 CCDC144C: CCDC144C pr 61.8 1E+02 0.0022 31.3 11.0 70 242-318 21-97 (305)
337 PF05600 DUF773: Protein of un 61.7 64 0.0014 34.4 10.1 75 225-299 397-482 (507)
338 PF07111 HCR: Alpha helical co 61.7 2.4E+02 0.0053 31.9 14.6 65 262-326 513-577 (739)
339 PF04977 DivIC: Septum formati 61.4 27 0.00058 26.6 5.6 29 247-275 22-50 (80)
340 cd07596 BAR_SNX The Bin/Amphip 61.4 1.2E+02 0.0025 26.8 14.7 16 246-261 114-129 (218)
341 PF03980 Nnf1: Nnf1 ; InterPr 61.4 14 0.0003 30.8 4.3 30 247-276 78-107 (109)
342 PF06419 COG6: Conserved oligo 61.3 1.6E+02 0.0035 32.0 13.2 63 248-310 44-106 (618)
343 PF15070 GOLGA2L5: Putative go 61.3 95 0.0021 34.1 11.5 31 263-293 160-190 (617)
344 PF07989 Microtub_assoc: Micro 61.2 56 0.0012 26.4 7.5 27 275-301 5-31 (75)
345 PF09744 Jnk-SapK_ap_N: JNK_SA 60.9 1.4E+02 0.0029 27.5 13.0 19 275-293 94-112 (158)
346 KOG4674 Uncharacterized conser 60.6 55 0.0012 40.2 10.2 58 241-298 1235-1299(1822)
347 PF05557 MAD: Mitotic checkpoi 60.6 70 0.0015 35.0 10.5 23 300-322 561-583 (722)
348 PF09763 Sec3_C: Exocyst compl 60.6 2E+02 0.0044 31.3 13.8 75 248-322 22-99 (701)
349 PF13874 Nup54: Nucleoporin co 60.4 72 0.0016 28.1 8.7 34 250-283 52-85 (141)
350 PF04012 PspA_IM30: PspA/IM30 60.2 1.4E+02 0.0031 27.4 12.1 82 240-321 89-174 (221)
351 KOG0978 E3 ubiquitin ligase in 60.2 70 0.0015 35.8 10.3 80 240-320 564-643 (698)
352 PF13874 Nup54: Nucleoporin co 59.8 91 0.002 27.4 9.3 48 249-296 44-91 (141)
353 PF06008 Laminin_I: Laminin Do 59.4 1.6E+02 0.0034 28.1 11.5 48 251-298 47-94 (264)
354 PF01166 TSC22: TSC-22/dip/bun 59.2 16 0.00036 28.8 4.0 20 250-269 22-41 (59)
355 PF05377 FlaC_arch: Flagella a 59.2 38 0.00082 26.4 5.9 16 283-298 20-35 (55)
356 PF08826 DMPK_coil: DMPK coile 59.1 77 0.0017 25.0 7.7 27 261-287 23-49 (61)
357 TIGR01005 eps_transp_fam exopo 59.1 2.6E+02 0.0056 30.6 14.4 73 251-323 318-394 (754)
358 PRK14872 rod shape-determining 58.9 54 0.0012 33.5 8.7 42 277-322 57-98 (337)
359 PHA03162 hypothetical protein; 58.8 43 0.00093 30.4 7.0 28 246-273 10-37 (135)
360 PF05377 FlaC_arch: Flagella a 58.7 58 0.0012 25.4 6.8 39 251-296 2-40 (55)
361 PF08826 DMPK_coil: DMPK coile 58.7 89 0.0019 24.6 9.8 11 308-318 49-59 (61)
362 COG5185 HEC1 Protein involved 58.6 58 0.0013 35.3 9.0 63 248-320 486-548 (622)
363 PF06632 XRCC4: DNA double-str 58.5 1.9E+02 0.004 29.7 12.4 18 73-91 5-22 (342)
364 KOG2629 Peroxisomal membrane a 58.4 1.8E+02 0.004 29.5 12.0 40 285-324 155-194 (300)
365 TIGR02977 phageshock_pspA phag 58.4 1.6E+02 0.0035 27.5 13.2 54 249-302 99-152 (219)
366 PF04859 DUF641: Plant protein 58.0 33 0.00072 30.7 6.2 32 258-289 96-127 (131)
367 PF12761 End3: Actin cytoskele 57.6 1.6E+02 0.0035 28.1 11.0 15 222-236 93-107 (195)
368 PF10226 DUF2216: Uncharacteri 57.6 1E+02 0.0022 29.6 9.6 67 258-324 43-120 (195)
369 PHA03161 hypothetical protein; 57.4 1.6E+02 0.0035 27.2 11.1 72 235-318 42-113 (150)
370 PF14817 HAUS5: HAUS augmin-li 57.3 2.6E+02 0.0056 31.0 14.0 85 238-322 75-159 (632)
371 PF05812 Herpes_BLRF2: Herpesv 57.2 17 0.00036 32.2 4.1 28 248-275 2-29 (118)
372 PF09728 Taxilin: Myosin-like 57.1 99 0.0021 30.9 10.0 66 248-313 243-308 (309)
373 PF05812 Herpes_BLRF2: Herpesv 57.1 18 0.00039 32.1 4.3 26 272-297 5-30 (118)
374 KOG2189 Vacuolar H+-ATPase V0 57.1 88 0.0019 35.6 10.5 29 239-267 46-74 (829)
375 PF12128 DUF3584: Protein of u 56.7 2.9E+02 0.0063 32.4 15.0 27 249-275 678-704 (1201)
376 PF08606 Prp19: Prp19/Pso4-lik 56.6 71 0.0015 26.1 7.3 52 271-322 9-67 (70)
377 PF04340 DUF484: Protein of un 56.5 54 0.0012 30.5 7.7 42 270-311 40-81 (225)
378 TIGR00634 recN DNA repair prot 56.5 38 0.00083 35.8 7.5 84 223-318 139-222 (563)
379 KOG4460 Nuclear pore complex, 55.9 1.8E+02 0.0039 32.4 12.2 81 245-325 598-689 (741)
380 PRK10636 putative ABC transpor 55.9 1.1E+02 0.0023 33.1 10.8 49 250-298 564-619 (638)
381 PF05700 BCAS2: Breast carcino 55.8 73 0.0016 30.0 8.5 31 268-298 173-203 (221)
382 PRK11281 hypothetical protein; 55.7 1.1E+02 0.0024 35.9 11.5 62 258-319 194-255 (1113)
383 KOG0796 Spliceosome subunit [R 55.5 85 0.0018 32.1 9.3 42 276-319 121-162 (319)
384 PF01486 K-box: K-box region; 55.4 40 0.00088 27.7 6.0 16 278-293 83-98 (100)
385 KOG0972 Huntingtin interacting 55.4 1.4E+02 0.0031 30.7 10.8 62 266-327 269-330 (384)
386 KOG0978 E3 ubiquitin ligase in 55.1 2.7E+02 0.0058 31.5 13.6 14 309-322 605-618 (698)
387 KOG0804 Cytoplasmic Zn-finger 55.0 2.1E+02 0.0046 30.8 12.3 7 64-70 88-94 (493)
388 PF02050 FliJ: Flagellar FliJ 54.9 1E+02 0.0022 24.2 11.8 79 245-323 1-84 (123)
389 KOG4807 F-actin binding protei 54.8 1.5E+02 0.0033 31.7 11.2 39 284-322 421-463 (593)
390 PF00769 ERM: Ezrin/radixin/mo 54.5 2.1E+02 0.0045 27.6 13.6 98 229-326 13-117 (246)
391 PF15358 TSKS: Testis-specific 54.5 1.7E+02 0.0036 31.5 11.4 70 231-300 142-211 (558)
392 KOG3647 Predicted coiled-coil 54.5 1.7E+02 0.0036 29.9 11.0 46 276-321 139-184 (338)
393 PF07558 Shugoshin_N: Shugoshi 54.5 13 0.00028 27.5 2.6 42 230-272 3-44 (46)
394 PF12128 DUF3584: Protein of u 54.4 3.1E+02 0.0067 32.2 14.7 43 251-293 623-665 (1201)
395 KOG0976 Rho/Rac1-interacting s 54.3 3.2E+02 0.007 31.9 14.1 74 225-298 323-400 (1265)
396 PRK04778 septation ring format 54.2 2.1E+02 0.0046 30.6 12.5 20 256-275 317-336 (569)
397 KOG1850 Myosin-like coiled-coi 53.9 2.8E+02 0.0061 28.9 13.9 63 260-323 113-175 (391)
398 PF10212 TTKRSYEDQ: Predicted 53.6 1.5E+02 0.0032 32.3 11.1 37 282-318 478-514 (518)
399 KOG0249 LAR-interacting protei 53.5 2.1E+02 0.0046 32.7 12.5 42 278-319 217-258 (916)
400 PF09789 DUF2353: Uncharacteri 53.5 2.6E+02 0.0057 28.5 12.9 61 238-298 19-100 (319)
401 TIGR03007 pepcterm_ChnLen poly 53.4 2.7E+02 0.0058 28.6 15.1 19 304-322 354-372 (498)
402 PRK06800 fliH flagellar assemb 53.1 1E+02 0.0022 29.8 8.9 34 252-285 41-74 (228)
403 KOG0612 Rho-associated, coiled 53.0 2.7E+02 0.0058 33.5 13.6 7 139-145 339-345 (1317)
404 PRK14160 heat shock protein Gr 52.8 2.2E+02 0.0048 27.4 11.2 47 250-296 55-101 (211)
405 PF14523 Syntaxin_2: Syntaxin- 52.6 1.2E+02 0.0026 24.3 10.4 75 249-323 10-89 (102)
406 KOG1899 LAR transmembrane tyro 52.6 1.2E+02 0.0025 34.2 10.3 42 238-279 156-197 (861)
407 KOG4673 Transcription factor T 52.4 1.5E+02 0.0033 33.7 11.2 44 281-324 908-951 (961)
408 PRK04863 mukB cell division pr 52.3 3.5E+02 0.0076 33.0 14.9 9 60-70 84-92 (1486)
409 COG1792 MreC Cell shape-determ 52.3 45 0.00099 32.8 6.8 48 244-295 61-108 (284)
410 PHA03162 hypothetical protein; 52.2 18 0.00039 32.7 3.6 23 272-294 15-37 (135)
411 PF09311 Rab5-bind: Rabaptin-l 52.1 7.8 0.00017 35.4 1.4 19 257-275 30-48 (181)
412 PRK13923 putative spore coat p 52.1 1.7E+02 0.0038 27.4 10.1 47 268-321 109-155 (170)
413 PF06008 Laminin_I: Laminin Do 52.0 2.1E+02 0.0045 27.3 11.0 45 251-295 54-98 (264)
414 PF02388 FemAB: FemAB family; 52.0 1E+02 0.0022 31.4 9.5 15 308-322 283-297 (406)
415 PF07111 HCR: Alpha helical co 51.6 1.4E+02 0.003 33.7 10.8 17 308-324 214-230 (739)
416 PHA03155 hypothetical protein; 51.3 20 0.00043 31.7 3.6 24 272-295 10-33 (115)
417 PF10779 XhlA: Haemolysin XhlA 51.2 94 0.002 24.4 7.2 45 253-297 3-47 (71)
418 PF12709 Kinetocho_Slk19: Cent 51.1 1.4E+02 0.003 25.3 8.5 39 247-285 40-78 (87)
419 PRK10636 putative ABC transpor 50.9 1.5E+02 0.0032 32.1 10.8 30 251-280 558-587 (638)
420 KOG0963 Transcription factor/C 50.8 3.7E+02 0.008 30.0 13.7 65 258-322 230-309 (629)
421 KOG2991 Splicing regulator [RN 50.7 1.2E+02 0.0025 30.8 9.2 40 257-296 218-262 (330)
422 PF04642 DUF601: Protein of un 50.7 84 0.0018 31.6 8.2 51 249-299 217-274 (311)
423 KOG1853 LIS1-interacting prote 50.5 2.9E+02 0.0062 28.1 13.7 53 233-285 75-127 (333)
424 KOG0962 DNA repair protein RAD 50.5 3.4E+02 0.0073 32.8 14.1 68 253-322 1012-1079(1294)
425 PF09325 Vps5: Vps5 C terminal 50.5 2E+02 0.0043 26.2 13.4 77 240-319 126-202 (236)
426 KOG0979 Structural maintenance 50.5 2.6E+02 0.0056 33.0 12.9 34 230-263 641-675 (1072)
427 TIGR03007 pepcterm_ChnLen poly 50.5 3E+02 0.0065 28.3 14.3 67 253-319 314-383 (498)
428 COG1382 GimC Prefoldin, chaper 50.2 79 0.0017 28.0 7.2 15 308-322 94-108 (119)
429 KOG4673 Transcription factor T 50.0 3.7E+02 0.008 30.8 13.6 33 244-276 404-436 (961)
430 PF11500 Cut12: Spindle pole b 49.8 1.4E+02 0.003 27.5 8.9 52 227-278 83-134 (152)
431 KOG3335 Predicted coiled-coil 49.7 23 0.00049 33.5 4.0 45 225-275 88-132 (181)
432 PHA03011 hypothetical protein; 49.6 1.1E+02 0.0024 26.9 7.9 57 257-320 58-114 (120)
433 PF07246 Phlebovirus_NSM: Phle 49.6 1.7E+02 0.0037 29.2 10.2 16 128-143 69-84 (264)
434 PF05615 THOC7: Tho complex su 49.5 1.7E+02 0.0037 25.2 13.8 10 226-235 14-23 (139)
435 PRK10929 putative mechanosensi 49.5 2.4E+02 0.0052 33.3 12.8 64 261-324 178-241 (1109)
436 smart00502 BBC B-Box C-termina 49.4 1.4E+02 0.0029 24.0 13.7 80 244-323 16-97 (127)
437 COG0172 SerS Seryl-tRNA synthe 49.4 2.1E+02 0.0046 30.3 11.4 31 288-318 72-102 (429)
438 PF03962 Mnd1: Mnd1 family; I 49.3 1.6E+02 0.0036 27.3 9.6 52 247-298 67-124 (188)
439 COG3352 FlaC Putative archaeal 49.3 1.2E+02 0.0026 28.3 8.4 55 249-323 79-133 (157)
440 TIGR01005 eps_transp_fam exopo 49.2 88 0.0019 34.1 8.9 71 250-320 195-266 (754)
441 KOG0247 Kinesin-like protein [ 48.9 2.1E+02 0.0046 32.6 11.7 57 241-297 512-568 (809)
442 KOG4715 SWI/SNF-related matrix 48.8 1.7E+02 0.0037 30.4 10.2 33 248-280 220-252 (410)
443 PF12777 MT: Microtubule-bindi 48.5 1.3E+02 0.0029 29.9 9.5 67 223-294 214-280 (344)
444 PRK04778 septation ring format 48.4 2.1E+02 0.0046 30.6 11.5 23 249-271 317-339 (569)
445 KOG2751 Beclin-like protein [S 48.4 2.1E+02 0.0046 30.6 11.1 61 239-299 154-219 (447)
446 KOG0996 Structural maintenance 48.3 2.5E+02 0.0054 33.6 12.5 60 239-298 532-591 (1293)
447 KOG2391 Vacuolar sorting prote 48.2 3.5E+02 0.0075 28.3 13.3 11 233-243 225-235 (365)
448 TIGR03545 conserved hypothetic 48.1 1.5E+02 0.0032 32.2 10.3 28 237-264 179-206 (555)
449 KOG2077 JNK/SAPK-associated pr 47.9 59 0.0013 36.1 7.2 63 225-296 314-376 (832)
450 PF13805 Pil1: Eisosome compon 47.8 1.6E+02 0.0035 29.4 9.7 25 251-275 133-157 (271)
451 PRK15396 murein lipoprotein; P 47.7 1.4E+02 0.0031 24.6 7.9 16 253-268 29-44 (78)
452 KOG0979 Structural maintenance 47.6 4.6E+02 0.01 31.0 14.3 44 228-271 181-224 (1072)
453 PRK10963 hypothetical protein; 47.2 92 0.002 29.3 7.7 66 252-322 40-105 (223)
454 KOG2264 Exostosin EXT1L [Signa 47.2 1.9E+02 0.0041 32.4 10.8 50 268-317 91-140 (907)
455 TIGR03545 conserved hypothetic 46.8 1.6E+02 0.0034 32.0 10.2 69 230-298 163-240 (555)
456 PF14645 Chibby: Chibby family 46.6 80 0.0017 27.5 6.7 7 138-144 1-7 (116)
457 KOG0239 Kinesin (KAR3 subfamil 46.5 2.8E+02 0.0061 30.9 12.2 33 263-295 248-280 (670)
458 PF11629 Mst1_SARAH: C termina 46.4 50 0.0011 25.3 4.7 30 287-326 11-40 (49)
459 PF11577 NEMO: NF-kappa-B esse 46.3 1.5E+02 0.0034 23.8 9.3 36 253-298 3-38 (68)
460 KOG0709 CREB/ATF family transc 46.3 78 0.0017 33.9 7.7 76 225-325 245-320 (472)
461 KOG2010 Double stranded RNA bi 46.1 93 0.002 32.3 7.9 45 251-295 121-165 (405)
462 TIGR02971 heterocyst_DevB ABC 46.0 1.7E+02 0.0038 28.1 9.6 7 267-273 101-107 (327)
463 TIGR01010 BexC_CtrB_KpsE polys 45.6 1E+02 0.0022 30.5 8.1 15 281-295 218-232 (362)
464 KOG4657 Uncharacterized conser 45.6 3.2E+02 0.0069 27.1 13.1 86 241-326 40-128 (246)
465 PRK09841 cryptic autophosphory 45.6 2.2E+02 0.0047 31.4 11.2 19 305-323 370-388 (726)
466 KOG0971 Microtubule-associated 45.4 3.6E+02 0.0078 31.8 12.9 43 237-279 398-440 (1243)
467 KOG4603 TBP-1 interacting prot 45.4 1.6E+02 0.0035 28.2 8.8 7 288-294 134-140 (201)
468 KOG4674 Uncharacterized conser 45.2 2.2E+02 0.0048 35.3 11.9 65 258-322 1231-1295(1822)
469 KOG0244 Kinesin-like protein [ 45.1 1.1E+02 0.0023 35.4 8.9 92 232-323 313-409 (913)
470 PF05911 DUF869: Plant protein 45.1 2.6E+02 0.0056 31.8 11.8 8 63-70 381-388 (769)
471 COG2919 Septum formation initi 45.0 2E+02 0.0043 24.7 12.3 38 262-299 49-86 (117)
472 PF09787 Golgin_A5: Golgin sub 45.0 3.8E+02 0.0083 28.4 12.6 96 229-324 243-356 (511)
473 KOG0018 Structural maintenance 45.0 3.1E+02 0.0068 32.5 12.5 49 251-299 404-452 (1141)
474 PF05701 WEMBL: Weak chloropla 44.7 3E+02 0.0064 29.4 11.8 18 304-321 336-353 (522)
475 KOG2507 Ubiquitin regulatory p 44.7 3.6E+02 0.0077 29.2 12.1 28 135-162 118-147 (506)
476 PRK14143 heat shock protein Gr 44.6 2.6E+02 0.0056 27.3 10.5 70 253-322 64-135 (238)
477 cd07665 BAR_SNX1 The Bin/Amphi 44.6 2.6E+02 0.0057 27.1 10.5 85 245-334 25-109 (234)
478 TIGR02209 ftsL_broad cell divi 44.5 88 0.0019 24.4 6.1 37 239-275 21-57 (85)
479 PF05008 V-SNARE: Vesicle tran 44.4 1.4E+02 0.003 23.1 7.2 55 247-301 23-78 (79)
480 PF03980 Nnf1: Nnf1 ; InterPr 44.4 1.5E+02 0.0032 24.7 7.7 68 245-319 33-108 (109)
481 PF10482 CtIP_N: Tumour-suppre 44.3 2.4E+02 0.0051 25.3 11.6 90 238-327 3-96 (120)
482 PF09730 BicD: Microtubule-ass 44.2 2.7E+02 0.006 31.4 11.8 75 245-319 44-118 (717)
483 PF06216 RTBV_P46: Rice tungro 43.6 1.2E+02 0.0025 30.8 8.0 65 247-314 55-119 (389)
484 KOG4657 Uncharacterized conser 43.6 3.4E+02 0.0074 26.9 14.3 92 230-321 39-130 (246)
485 COG5185 HEC1 Protein involved 43.5 4.6E+02 0.01 28.8 12.8 93 234-326 273-365 (622)
486 PF06210 DUF1003: Protein of u 43.4 1.6E+02 0.0035 25.3 8.0 52 233-289 55-106 (108)
487 PF05852 DUF848: Gammaherpesvi 43.2 2.4E+02 0.0053 25.9 9.4 64 244-317 49-112 (146)
488 PF03670 UPF0184: Uncharacteri 43.1 1.7E+02 0.0037 24.6 7.7 48 248-295 25-72 (83)
489 KOG4348 Adaptor protein CMS/SE 43.0 1.3E+02 0.0028 32.6 8.6 59 247-322 567-625 (627)
490 TIGR01000 bacteriocin_acc bact 42.7 2.2E+02 0.0048 29.2 10.3 70 247-316 234-316 (457)
491 KOG1318 Helix loop helix trans 42.5 1.8E+02 0.0039 30.7 9.6 105 220-326 221-325 (411)
492 KOG0964 Structural maintenance 42.4 5.6E+02 0.012 30.5 13.9 109 226-334 661-770 (1200)
493 KOG4848 Extracellular matrix-a 42.4 3.3E+02 0.0073 26.5 11.0 72 246-317 104-179 (225)
494 KOG0971 Microtubule-associated 42.3 6.6E+02 0.014 29.9 14.4 92 227-318 282-388 (1243)
495 KOG4460 Nuclear pore complex, 42.2 1.8E+02 0.0038 32.4 9.6 64 252-322 584-647 (741)
496 PLN02320 seryl-tRNA synthetase 42.1 2.4E+02 0.0052 30.5 10.6 89 226-314 75-167 (502)
497 COG4238 Murein lipoprotein [Ce 42.0 1.9E+02 0.0041 24.1 7.7 50 249-298 25-74 (78)
498 PF14712 Snapin_Pallidin: Snap 41.9 1.8E+02 0.0039 23.2 9.8 69 251-319 16-92 (92)
499 PTZ00454 26S protease regulato 41.9 1.1E+02 0.0023 31.5 7.8 50 249-298 15-64 (398)
500 PRK03992 proteasome-activating 41.8 1E+02 0.0022 31.2 7.6 48 251-298 3-50 (389)
No 1
>smart00338 BRLZ basic region leucin zipper.
Probab=99.40 E-value=2.4e-12 Score=98.30 Aligned_cols=62 Identities=37% Similarity=0.398 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDN 286 (363)
Q Consensus 225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN 286 (363)
.|+|+.||+++||+||++||.||+.|+.+||.+|..|+.+|..|..++..|..++..|..++
T Consensus 2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999988876655555443
No 2
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=99.30 E-value=1.6e-11 Score=93.56 Aligned_cols=62 Identities=39% Similarity=0.503 Sum_probs=56.2
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNS 287 (363)
Q Consensus 226 D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~ 287 (363)
+.|+.+|+++||+||+++|.||+.||++||.+|..|+.+|..|..++..|...+..|..+|.
T Consensus 3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~ 64 (64)
T PF00170_consen 3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH 64 (64)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56889999999999999999999999999999999999999999999999888888877763
No 3
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=99.25 E-value=6.2e-11 Score=112.98 Aligned_cols=76 Identities=28% Similarity=0.271 Sum_probs=72.6
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 037696 225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK 300 (363)
Q Consensus 225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~ 300 (363)
-++|-.||+|+||.+||-+|.|||++++++|..|..|..||..|..+...|+.++..|..+|.+|.++|+.+.+++
T Consensus 66 ~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l 141 (292)
T KOG4005|consen 66 WEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQEL 141 (292)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3889999999999999999999999999999999999999999999999999999999999999999999887754
No 4
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=99.11 E-value=1.1e-10 Score=120.82 Aligned_cols=69 Identities=35% Similarity=0.355 Sum_probs=62.9
Q ss_pred CCCCHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 223 TIIDPK---RVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQ 291 (363)
Q Consensus 223 ~~~D~K---R~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKq 291 (363)
..+|.| |..|||+||+||..||+|||+|+..||.+++.|..||..|+.+.+.|.+++..|..||..||-
T Consensus 273 ~~~d~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kv 344 (655)
T KOG4343|consen 273 VGSDIKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKV 344 (655)
T ss_pred CccCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCccccc
Confidence 445654 666999999999999999999999999999999999999999999999999999999998863
No 5
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=99.04 E-value=1.2e-09 Score=81.37 Aligned_cols=52 Identities=40% Similarity=0.484 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDH 277 (363)
Q Consensus 225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~q 277 (363)
.|+++.||+ +||+||++||.||++|+.+|+.+|..|+.+|..|..++..|..
T Consensus 2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467888888 9999999999999999999999999999999999888887754
No 6
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=98.94 E-value=1.1e-09 Score=111.83 Aligned_cols=67 Identities=34% Similarity=0.447 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
...||+||+|+|.+|||.||+|||.||+.||.+|....+||.+|..+|..|+. +|..|-++|..|..
T Consensus 248 riLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~Le~-------~N~sLl~qL~klQt 314 (472)
T KOG0709|consen 248 RILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEELEL-------SNRSLLAQLKKLQT 314 (472)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHHHhh-------ccHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999888764 56666666665533
No 7
>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]
Probab=98.76 E-value=1.3e-08 Score=99.51 Aligned_cols=52 Identities=31% Similarity=0.458 Sum_probs=46.9
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDH 277 (363)
Q Consensus 226 D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~q 277 (363)
-.||.-|+++|||+||.+|+|||+||..||.+|..|+.+|..|-++|..|.+
T Consensus 289 trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKe 340 (348)
T KOG3584|consen 289 TRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKE 340 (348)
T ss_pred hhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHH
Confidence 4677779999999999999999999999999999999999998888777754
No 8
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=98.10 E-value=8.6e-06 Score=78.92 Aligned_cols=53 Identities=36% Similarity=0.471 Sum_probs=45.6
Q ss_pred CHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 226 DPKRVKR-ILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQ 278 (363)
Q Consensus 226 D~KR~RR-~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq 278 (363)
+.+|+.| .++||++|.+||+||+++|.+||.+|..|..+|..|...+..|.++
T Consensus 203 e~~kleRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~ 256 (279)
T KOG0837|consen 203 EKIKLERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQ 256 (279)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHH
Confidence 3445555 7999999999999999999999999999999999998887776543
No 9
>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell. MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.
Probab=98.02 E-value=6.2e-08 Score=79.20 Aligned_cols=57 Identities=37% Similarity=0.504 Sum_probs=47.4
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 223 TIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQR 279 (363)
Q Consensus 223 ~~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~ 279 (363)
...+.|.+||.++||.+|++||.||+.++.+||..+..|+.+...|..++..+..++
T Consensus 25 q~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~ 81 (92)
T PF03131_consen 25 QIAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQER 81 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335679999999999999999999999999999999988887777766666555433
No 10
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=97.83 E-value=0.002 Score=63.51 Aligned_cols=58 Identities=21% Similarity=0.180 Sum_probs=42.8
Q ss_pred CCCCCCCCCHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 218 ASNGDTIIDPKRVKRI-LANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 218 ~~~~~~~~D~KR~RR~-LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
++......++|+.||+ +.|..+|.|.|+||+.-.+.|+.+...|+.+|.+|+.++..|
T Consensus 216 ~s~~~~~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~l 274 (294)
T KOG4571|consen 216 KSAHPYKTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASEL 274 (294)
T ss_pred ccCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667788888874 455556999999999999999998888777666665544433
No 11
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=97.22 E-value=0.003 Score=56.18 Aligned_cols=47 Identities=36% Similarity=0.493 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 224 IIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSP 270 (363)
Q Consensus 224 ~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ 270 (363)
.+-.|..||-|+||=.|+-+|.|+.+.-.+||.+...|..++..|..
T Consensus 49 VvrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~L~~ 95 (135)
T KOG4196|consen 49 VVRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEKLKE 95 (135)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999888888777666665555543
No 12
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=97.16 E-value=0.00066 Score=72.27 Aligned_cols=68 Identities=34% Similarity=0.406 Sum_probs=55.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 037696 230 VKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDA 305 (363)
Q Consensus 230 ~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA 305 (363)
+||.=+||.+||++|+||+.-|..||..|..|+.|..+|..+ ...+..+-.++|++|..|.++. +++.
T Consensus 492 IRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~E-------r~~~d~~L~~~kqqls~L~~~V-f~~l 559 (604)
T KOG3863|consen 492 IRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRE-------RDELDSTLGVMKQQLSELYQEV-FQQL 559 (604)
T ss_pred cccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 468889999999999999999999999999999988887654 3445567788999999998763 4443
No 13
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=96.85 E-value=0.0066 Score=58.71 Aligned_cols=54 Identities=28% Similarity=0.317 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 222 DTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 222 ~~~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
....|++=..|.-+|=++++|||.+.++...++..+|..|+.||..|+.+|..|
T Consensus 188 ~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l 241 (269)
T KOG3119|consen 188 VEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQL 241 (269)
T ss_pred hhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566789999999999999999888888888888777776554443
No 14
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=96.65 E-value=0.0075 Score=51.96 Aligned_cols=75 Identities=21% Similarity=0.374 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq 324 (363)
..+..||.++..|..+...|+..+..|.+++..|..||..||.+|..+.+...-+... ..+-+=-+.|..+|..+
T Consensus 8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~~~~~~~~~-~~~~~g~~NL~~LY~EG 82 (110)
T PRK13169 8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEAEEPAKEKK-KKEGEGKDNLARLYQEG 82 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc-ccccchHHHHHHHHHcC
Confidence 3578999999999999999999999999999999999999999999874421111100 01112236777777754
No 15
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=96.43 E-value=0.016 Score=49.50 Aligned_cols=76 Identities=21% Similarity=0.374 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHhhh
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDA--HQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA--~~E~LkkEIerLRql~~qq 324 (363)
..|.+||.++..|..+...|+..+..|.+++..|..||..||.+|..+.+....+.. ....+.+=-+.|..+|..+
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~~~~~~~~~~~~~~~~~g~~NL~~LY~EG 85 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQEEEEKEEKKTKKKLGEGRDNLARLYQEG 85 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhcC
Confidence 467899999999999999999999999999999999999999999998661111110 0012334455666676643
No 16
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=96.13 E-value=0.15 Score=40.92 Aligned_cols=51 Identities=20% Similarity=0.261 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
+-++.||.+|+.+-..+..|..++..|.+++..|..+|..|+.....|.++
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e 54 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQE 54 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 457889999998888888888888888888888888888888877777654
No 17
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.06 E-value=0.21 Score=43.68 Aligned_cols=86 Identities=17% Similarity=0.230 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696 238 QSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERL 317 (363)
Q Consensus 238 ESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerL 317 (363)
.+=-.+|.|=+.+.+.|..++..|..++..|...+..|..++..+..+...+..+...+.....-.......++.|+.+|
T Consensus 41 ~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~kl 120 (151)
T PF11559_consen 41 YDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKL 120 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555556666666666666666666666666666666666666666666666666555544444555566677766
Q ss_pred HHHHhh
Q 037696 318 RQVYHQ 323 (363)
Q Consensus 318 Rql~~q 323 (363)
+..+.+
T Consensus 121 k~~~~~ 126 (151)
T PF11559_consen 121 KNQLQQ 126 (151)
T ss_pred HHHHHH
Confidence 655553
No 18
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=96.03 E-value=0.11 Score=41.31 Aligned_cols=60 Identities=20% Similarity=0.346 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
.||..|..|+..+..+..+++.....+..|..|+...-.+|+.... .+..|+.|++.|+.
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~-------e~~~Lk~E~e~L~~ 61 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYE-------ENNKLKEENEALRK 61 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 4667777777777777777777766666666666666666655544 34444555544443
No 19
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.65 E-value=0.19 Score=47.24 Aligned_cols=55 Identities=15% Similarity=0.127 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 037696 261 LQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIE 315 (363)
Q Consensus 261 Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIe 315 (363)
+..+..+|..+++...++...|..||+.|++++..+..+...-+++++.+++.+.
T Consensus 116 ~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 116 WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777888889999999888887766555666666666553
No 20
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.58 E-value=1.2 Score=49.76 Aligned_cols=26 Identities=31% Similarity=0.687 Sum_probs=15.8
Q ss_pred CCCC---CCCC--CCCCCCCCCccccccccC
Q 037696 3 QLPP---KIPN--MSHNWSSFPYQRMSFISS 28 (363)
Q Consensus 3 qlpp---kip~--~~~~w~~~~~~~~~~~~~ 28 (363)
+||| |.|. ....||.|++..+.++..
T Consensus 90 ~LPPsll~~~~~~~p~~~p~fg~Gsls~~qp 120 (1118)
T KOG1029|consen 90 VLPPSLLKQPPRNAPSTWPGFGMGSLSYSQP 120 (1118)
T ss_pred CCChHHhccCCcCCCCCCCccCCCCcCcCCC
Confidence 4555 3343 346899999876644433
No 21
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=95.54 E-value=0.17 Score=40.32 Aligned_cols=52 Identities=19% Similarity=0.130 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
+.+++-|.+++...+.++..|..+-.....+....-.+|..|+.++..|.++
T Consensus 11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888888888888888888888888877666543
No 22
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=94.91 E-value=0.072 Score=46.35 Aligned_cols=46 Identities=22% Similarity=0.401 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
-+.+||.++.+|-++...|+..+..|.+++..|..||..||.||+.
T Consensus 9 ~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 9 QVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 4789999999999999999999999999999999999999999998
No 23
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=94.85 E-value=0.45 Score=39.29 Aligned_cols=68 Identities=18% Similarity=0.256 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHhh
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEI----ERLRQVYHQ 323 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEI----erLRql~~q 323 (363)
+-++.||.+|+..-..+.-|.-++..|.+++..|..|+..++..-..|.+ .++.|+.|- +|||.++|.
T Consensus 4 EvleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~-------en~qLk~E~~~WqerLr~LLGk 75 (79)
T PRK15422 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELER-------ENNHLKEQQNGWQERLQALLGR 75 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 34677777777766666666666666655555555555554444444433 334444443 366777763
No 24
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=94.72 E-value=1.7 Score=42.21 Aligned_cols=97 Identities=23% Similarity=0.278 Sum_probs=68.5
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH
Q 037696 226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLD---------HQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 226 D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~---------qq~~~L~~EN~~LKqrL~~L 296 (363)
-+|-++.+..-.+.+.+.-.-++.-+++|+.+|..++.+...++.++..++ .++..|..|-..++.++..|
T Consensus 29 ~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~l 108 (239)
T COG1579 29 IRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSL 108 (239)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777888888888888899999999999999888888887764 34566677777777777777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 297 AQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 297 ~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
..+..--+...+.|.+++.-|+-.+.
T Consensus 109 e~el~~l~~~~~~l~~~i~~l~~~~~ 134 (239)
T COG1579 109 EDELAELMEEIEKLEKEIEDLKERLE 134 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66654444444555555555554433
No 25
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.56 E-value=0.71 Score=37.78 Aligned_cols=34 Identities=32% Similarity=0.429 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 258 VTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQ 291 (363)
Q Consensus 258 V~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKq 291 (363)
|..|..+|..|..++..+++.+..|..||..||+
T Consensus 27 ieELKEknn~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 27 IEELKEKNNSLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444443
No 26
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=94.55 E-value=0.32 Score=47.64 Aligned_cols=83 Identities=20% Similarity=0.315 Sum_probs=66.0
Q ss_pred CCCCHHHHHHHHHhHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 223 TIIDPKRVKRILANRQS--AQRSRVRKLQY-ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 223 ~~~D~KR~RR~LsNRES--AqRSR~RKkqy-IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
..++.||+|-..+-.-+ -++.|+-+.+| |.+|+.+-..|+.||..|+.....|.-+.+.|..+-..|++.|.++.++
T Consensus 68 EK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~~ 147 (292)
T KOG4005|consen 68 EKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQQ 147 (292)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHHH
Confidence 34688888854433222 23456666666 6799999999999999999999999999999999999999999999998
Q ss_pred HHHHHH
Q 037696 300 KIFKDA 305 (363)
Q Consensus 300 ~~~KeA 305 (363)
++..-.
T Consensus 148 ~~~~~~ 153 (292)
T KOG4005|consen 148 QQHNTR 153 (292)
T ss_pred HHHhhH
Confidence 876543
No 27
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=94.55 E-value=1.7 Score=40.49 Aligned_cols=97 Identities=22% Similarity=0.257 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 037696 225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKD 304 (363)
Q Consensus 225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~Ke 304 (363)
-|-+-++.+|....+-+..+.+++.+...||.++..-..++..+..++..|++....|..+...|+........+..--.
T Consensus 86 FnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lk 165 (190)
T PF05266_consen 86 FNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLK 165 (190)
T ss_pred CccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667788888899999999999999999999999887777888877777777776666665555544444332221112
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037696 305 AHQEALKKEIERLRQVY 321 (363)
Q Consensus 305 A~~E~LkkEIerLRql~ 321 (363)
+..+.+..++..++.-+
T Consensus 166 s~~~~l~~~~~~~e~~F 182 (190)
T PF05266_consen 166 SEAEALKEEIENAELEF 182 (190)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 22344445554444433
No 28
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.45 E-value=0.53 Score=37.44 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+..||.+|..|=.....|..++..|.++...+..|+..|+.++..-
T Consensus 2 L~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~A 47 (65)
T TIGR02449 2 LQALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQA 47 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555555443
No 29
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=94.32 E-value=0.68 Score=38.68 Aligned_cols=59 Identities=25% Similarity=0.334 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 037696 260 TLQTEVSALSPRVAFLDHQ------RLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV 320 (363)
Q Consensus 260 ~Lq~ENs~Ls~ela~L~qq------~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql 320 (363)
.+..+|..|..++..|+.+ ......||..|+.++..|..=. .....|.+..||..||..
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 4555666666666666643 4677889999999999886633 445678899999998864
No 30
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=94.24 E-value=0.37 Score=38.35 Aligned_cols=46 Identities=20% Similarity=0.250 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
|+.|-.....|+.||..|..++..+..+...|...|..=+.+|..|
T Consensus 9 le~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam 54 (65)
T TIGR02449 9 VEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM 54 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444
No 31
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.17 E-value=0.56 Score=44.27 Aligned_cols=69 Identities=20% Similarity=0.278 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
-|++|+..-..|..||..|...+..+.+....|..|+-.|+.++..+.+...+- ..+.+|++.||....
T Consensus 9 ~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a----K~l~eEledLk~~~~ 77 (193)
T PF14662_consen 9 CVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA----KALEEELEDLKTLAK 77 (193)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 467888888888888888888888888888888888999998888885543332 245566666665544
No 32
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=94.10 E-value=0.74 Score=37.15 Aligned_cols=49 Identities=27% Similarity=0.376 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLI--------LNVDNSALKQRIAALAQD 299 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~--------L~~EN~~LKqrL~~L~qe 299 (363)
+-+.|..+..|+.||=.|.-++-+|+++... +..+|-+||..+..|..+
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~e 58 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRE 58 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999888763 456666666666555443
No 33
>PRK11637 AmiB activator; Provisional
Probab=94.07 E-value=1.2 Score=45.04 Aligned_cols=46 Identities=9% Similarity=0.097 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALA 297 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~ 297 (363)
.+++.++..++.+...|..++..+.+++..+..+-..+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~ 109 (428)
T PRK11637 64 RQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELN 109 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333334444444444433
No 34
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=94.04 E-value=3 Score=38.92 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 243 SRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 243 SR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~ 294 (363)
.....+..+++++.++..|+.+...+..++....++...+...+...+..+.
T Consensus 57 ~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 57 EIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555666666666666666666666666666666666555555544
No 35
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=94.01 E-value=1.2 Score=40.05 Aligned_cols=68 Identities=22% Similarity=0.337 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
++-|-.|..+-..|....-..+.++..+. |...|+.+|..|.++|..|.. ++..+..|+..++..|.+
T Consensus 46 reEVvrlKQrRRTLKNRGYA~sCR~KRv~-Qk~eLE~~k~~L~qqv~~L~~-------e~s~~~~E~da~k~k~e~ 113 (135)
T KOG4196|consen 46 REEVVRLKQRRRTLKNRGYAQSCRVKRVQ-QKHELEKEKAELQQQVEKLKE-------ENSRLRRELDAYKSKYEA 113 (135)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 45556666666777777777888888875 567899999999999999876 568899999999998884
No 36
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.94 E-value=0.31 Score=44.59 Aligned_cols=48 Identities=21% Similarity=0.331 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
|.+|+..+..|+.++..|..++......+..|..|...|..++..++.
T Consensus 118 l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~ 165 (194)
T PF08614_consen 118 LAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEE 165 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444433333
No 37
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=93.44 E-value=4.5 Score=35.36 Aligned_cols=66 Identities=17% Similarity=0.211 Sum_probs=40.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 231 KRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 231 RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
.|=+.-|+.......++..-++.|+..+..|+.++..+..++..+..+...|..+++.+...+...
T Consensus 48 ~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~ 113 (151)
T PF11559_consen 48 DRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666777777776666666666666666555555555555544444433
No 38
>PRK09039 hypothetical protein; Validated
Probab=93.41 E-value=2.9 Score=41.96 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 261 LQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 261 Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
|+.+...|+.+++.|+..+..++.+....+.+|..|
T Consensus 142 L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L 177 (343)
T PRK09039 142 LNQQIAALRRQLAALEAALDASEKRDRESQAKIADL 177 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333
No 39
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=93.21 E-value=0.89 Score=41.90 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 257 SVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 257 kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
....|+.||..|..++..|.+++..|..||..|++++..+..++ +.|..=++|-|.+..
T Consensus 98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY-------~~L~~Im~RARkl~~ 156 (161)
T TIGR02894 98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDY-------QTLIDIMDRARKLAV 156 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHh
Confidence 46677888888999999999888899999999988888876653 566666666666543
No 40
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=93.05 E-value=5 Score=35.12 Aligned_cols=44 Identities=25% Similarity=0.347 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037696 282 LNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQN 325 (363)
Q Consensus 282 L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~ 325 (363)
|..+-..|..|...+-+=.--|....|+|+..|..||..|..|=
T Consensus 73 L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 73 LEQELEELQQRYQTLLELLGEKSEEVEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444443333223366788999999999999998663
No 41
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.03 E-value=1.8 Score=39.59 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=53.0
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
.+.++++.+.+.+..-+.-.......|.+++..+..|+.|...|..++..++.++..|..||..|-+|....
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~ 184 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQR 184 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666777777888888888888888888888888888888888888777654
No 42
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=93.00 E-value=1.1 Score=48.78 Aligned_cols=73 Identities=22% Similarity=0.255 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNV---DNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~---EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
.+.+|+..+..|+.++..|..++..+.+....-.. |-..+..++..|+..+.-+....|.|++++.+|+.+..
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~k~~~ 512 (652)
T COG2433 437 ENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRKMRK 512 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555444332222 22334455666666666666677778887777775544
No 43
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=92.99 E-value=0.5 Score=49.80 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
..++||.+++.|+.|...|..+...+++++..|+.||..|+.++..
T Consensus 77 kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a 122 (475)
T PRK13729 77 TAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKA 122 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999999999999999999888743
No 44
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=92.88 E-value=0.58 Score=38.50 Aligned_cols=48 Identities=31% Similarity=0.347 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
-++|..++..|+.....|..++..+.+.+..|..||.-|..-|..|..
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~ 65 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS 65 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367888999999999999999999999999999999999999988744
No 45
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.71 E-value=7.3 Score=35.08 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=52.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 230 VKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 230 ~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
+.....|++.+-+--.-+++.|..|+.++..+..+...|...+..+......|..+-...+.+|..|...
T Consensus 33 Le~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~ 102 (140)
T PF10473_consen 33 LEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESL 102 (140)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567777777777778888888888888888888888777777777777777777777777777654
No 46
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.64 E-value=5.2 Score=43.08 Aligned_cols=95 Identities=19% Similarity=0.154 Sum_probs=53.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHH
Q 037696 232 RILANRQSAQRSRVRKLQYISELERSVTTLQT-------EVSALSPRVAFLDHQRL----ILNVDNSALKQRIAALAQDK 300 (363)
Q Consensus 232 R~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~-------ENs~Ls~ela~L~qq~~----~L~~EN~~LKqrL~~L~qe~ 300 (363)
.+..-|+..+.+....+..|++|..++..+.. |+..|..++........ ....|-.+||..|..+..++
T Consensus 354 q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEK 433 (546)
T PF07888_consen 354 QWAQEKQALQHSAEADKDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEK 433 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666677777776655443 55556666655443332 22222234555333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037696 301 IFKDAHQEALKKEIERLRQVYHQQNI 326 (363)
Q Consensus 301 ~~KeA~~E~LkkEIerLRql~~qq~~ 326 (363)
.---.+...|+..|.+|++-++....
T Consensus 434 Eql~~EkQeL~~yi~~Le~r~~~~~~ 459 (546)
T PF07888_consen 434 EQLQEEKQELLEYIERLEQRLDKVAD 459 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22223456788899999998886554
No 47
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.53 E-value=2.5 Score=36.95 Aligned_cols=17 Identities=18% Similarity=0.372 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhhh
Q 037696 308 EALKKEIERLRQVYHQQ 324 (363)
Q Consensus 308 E~LkkEIerLRql~~qq 324 (363)
+.|...-+.+.++||..
T Consensus 78 ~~l~~ry~t~LellGEK 94 (120)
T PF12325_consen 78 EELQQRYQTLLELLGEK 94 (120)
T ss_pred HHHHHHHHHHHHHhcch
Confidence 34444444555555543
No 48
>PRK11637 AmiB activator; Provisional
Probab=92.52 E-value=4 Score=41.45 Aligned_cols=71 Identities=20% Similarity=0.176 Sum_probs=40.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 229 RVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 229 R~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
+++.+.+.....+......+..+.+++.++..|+.+...+..++..++++...+..+-..|..+|..+..+
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~ 118 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQ 118 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444555566666666666666666666666666666666666666666665443
No 49
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=92.37 E-value=2.9 Score=45.54 Aligned_cols=71 Identities=25% Similarity=0.315 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
...+..|+.+|+.|+.||+.|..++..+......|..+-..++.++.. ...++-+.+.+..+|.+|+..+.
T Consensus 421 ~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~----~~~~~rei~~~~~~I~~L~~~L~ 491 (652)
T COG2433 421 EKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRD----KVRKDREIRARDRRIERLEKELE 491 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHH
Confidence 445778888999999999999998888887777777777666666651 12233344555555555555444
No 50
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.35 E-value=2.4 Score=34.07 Aligned_cols=36 Identities=28% Similarity=0.236 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 259 TTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 259 ~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~ 294 (363)
..|+.|+.+|..+...|.+.+..|..||..|++.-.
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444444443333
No 51
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.34 E-value=5.8 Score=38.17 Aligned_cols=81 Identities=14% Similarity=0.064 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-Hhh
Q 037696 245 VRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV-YHQ 323 (363)
Q Consensus 245 ~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql-~~q 323 (363)
...-.+|.+++.+...|..|-.....+|....+.+..|+..-+.++............++.+...|+.+|+++|.- +|.
T Consensus 28 e~ee~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl 107 (230)
T PF10146_consen 28 ENEEKCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGL 107 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3455789999999999999999999999999999999988888888888777777767777888999999999998 664
Q ss_pred hh
Q 037696 324 QN 325 (363)
Q Consensus 324 q~ 325 (363)
..
T Consensus 108 ~~ 109 (230)
T PF10146_consen 108 EP 109 (230)
T ss_pred CC
Confidence 33
No 52
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=92.31 E-value=0.71 Score=36.27 Aligned_cols=48 Identities=23% Similarity=0.218 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
++|.+||.++..++.-+.+|...|....++...|..+.+.|+.+|..+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888887777777777777666666665555555555555554
No 53
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=92.18 E-value=3.4 Score=34.26 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=62.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 227 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 227 ~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
.+|+.+.|.+=+++-..|.-+..-..+|+.+|+.|....+.|..++.....++..|+.-|.++..+|...
T Consensus 10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a 79 (89)
T PF13747_consen 10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSA 79 (89)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888899988888888888999999999999999999999999999999999999999888764
No 54
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.04 E-value=9.6 Score=36.50 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHHHHHhhhh
Q 037696 257 SVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIF----KDAHQEALKKEIERLRQVYHQQN 325 (363)
Q Consensus 257 kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~----KeA~~E~LkkEIerLRql~~qq~ 325 (363)
.+..++.|+..++.++..|..++..|...|..|..+|..+...... -.+....+..||..||.-+..+.
T Consensus 210 ~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 210 ELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 3455677888888888888888888888888888888877654432 23445567777777777666543
No 55
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.74 E-value=1.8 Score=48.21 Aligned_cols=74 Identities=24% Similarity=0.306 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---
Q 037696 250 YISELERSVTTLQTEVSALSP---------------------RVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDA--- 305 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~---------------------ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA--- 305 (363)
+|.++..++..+..||..|.. ++..|..++..++.||..||-+|..+..++.++-.
T Consensus 93 ~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~ 172 (769)
T PF05911_consen 93 KLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEERE 172 (769)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556666665544 33455566666667777777776666555544321
Q ss_pred ------------------HHHHHHHHHHHHHHHHhh
Q 037696 306 ------------------HQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 306 ------------------~~E~LkkEIerLRql~~q 323 (363)
..-.|..|.+|||.++..
T Consensus 173 ~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk 208 (769)
T PF05911_consen 173 YSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRK 208 (769)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 234678999999998873
No 56
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=91.71 E-value=6 Score=39.33 Aligned_cols=80 Identities=19% Similarity=0.260 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 240 AQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 240 AqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
...-..+..+.+.+||.+...|..|...|..+...+.++-..+-.+...+..++..+..+...-.+..+.+...+++||.
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444445555555555555555555555555555555555555555555555555555444444444555555555553
No 57
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.49 E-value=1.3 Score=36.24 Aligned_cols=67 Identities=24% Similarity=0.305 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHh
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEI----ERLRQVYH 322 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEI----erLRql~~ 322 (363)
+-++.||.+|++.-.-..-|.-++..|.+++..|..|-+.+.....+|.+ .++.|+.|- +|||.++|
T Consensus 4 Ev~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~-------eneqlk~e~~~WQerlrsLLG 74 (79)
T COG3074 4 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALER-------ENEQLKEEQNGWQERLRALLG 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888766656666666666666555555555555555555544 445555553 57788777
No 58
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=91.44 E-value=4.8 Score=38.21 Aligned_cols=47 Identities=19% Similarity=0.251 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.-|..++..|+.||..|..+...|..+...|..++..|+-+|-..+.
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~ 144 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFES 144 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45778888888888888888888888889998899999888854433
No 59
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=91.42 E-value=1.4 Score=46.59 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQR 279 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~ 279 (363)
..|+.+-+.|..||..|+.+...+.++.
T Consensus 76 ~~l~~~N~~l~~eN~~L~~r~~~id~~i 103 (472)
T TIGR03752 76 AKLISENEALKAENERLQKREQSIDQQI 103 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4444555555555555555444444443
No 60
>PRK02119 hypothetical protein; Provisional
Probab=91.42 E-value=1.3 Score=35.51 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSP 270 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ 270 (363)
+|.+||.++..++.-+.+|..
T Consensus 10 Ri~~LE~rla~QE~tie~LN~ 30 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQ 30 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444433
No 61
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=91.42 E-value=0.31 Score=44.88 Aligned_cols=52 Identities=15% Similarity=0.259 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAH 306 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~ 306 (363)
|+++|.++++-=..|.-|..+| ++...|..+++.||.++..|.++.++++-+
T Consensus 2 LeD~EsklN~AIERnalLE~EL----dEKE~L~~~~QRLkDE~RDLKqEl~V~ek~ 53 (166)
T PF04880_consen 2 LEDFESKLNQAIERNALLESEL----DEKENLREEVQRLKDELRDLKQELIVQEKL 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCH--------------------
T ss_pred HHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999888 456778889999999999998888666643
No 62
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=91.23 E-value=5.2 Score=46.03 Aligned_cols=86 Identities=16% Similarity=0.246 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 037696 240 AQRSRVRKLQYISELERSV-TTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLR 318 (363)
Q Consensus 240 AqRSR~RKkqyIeELE~kV-~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLR 318 (363)
.++...+....|.+++.++ +.+..+..++..++..|.++...|+..+..|+.++..+...........+..+.+|..||
T Consensus 370 ~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~ 449 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLR 449 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3334444444455555555 445555556666666666666666666666666666666655444444455777888887
Q ss_pred HHHhhhh
Q 037696 319 QVYHQQN 325 (363)
Q Consensus 319 ql~~qq~ 325 (363)
....+.+
T Consensus 450 k~i~~~~ 456 (1074)
T KOG0250|consen 450 KKIENIS 456 (1074)
T ss_pred HHHHHHH
Confidence 7776655
No 63
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=91.20 E-value=15 Score=35.39 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 257 SVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 257 kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
+...++.++..|.............|..+-..+...+..|.....-++...+.|+.++...|.....
T Consensus 55 k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 55 KRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444455555666666666777777777777778888887777765553
No 64
>PRK02793 phi X174 lysis protein; Provisional
Probab=91.18 E-value=1.4 Score=35.12 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
++|.+||.++..++.-+.+|..-|...
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Q 34 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAH 34 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556665555555555554444433
No 65
>PRK00295 hypothetical protein; Provisional
Probab=91.12 E-value=1.7 Score=34.33 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQR 279 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~ 279 (363)
+|.+||.++..++.-+..|...|...+++.
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I 35 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVI 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888888777777777666655544443
No 66
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.98 E-value=4.8 Score=37.57 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
+..+..++..++..+..|..++..+.++...+..+-.+++..+.....
T Consensus 58 ~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 58 IQQLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555555555555554444444444444444444433
No 67
>PRK10884 SH3 domain-containing protein; Provisional
Probab=90.76 E-value=5.1 Score=37.83 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
+|..++..+..+..+|..++..|.+++..+..|+..|+.++..+..
T Consensus 122 ~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 122 EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333344444444444444433
No 68
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.65 E-value=0.74 Score=33.99 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 260 TLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 260 ~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
+|+.+...|......|...+..|..||..|+.+|..|..
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~ 40 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE 40 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666666666667777777777766654
No 69
>PRK04325 hypothetical protein; Provisional
Probab=90.61 E-value=1.7 Score=34.83 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
+|.+||.++..++.-+..|..-|..-+
T Consensus 10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq 36 (74)
T PRK04325 10 RITELEIQLAFQEDLIDGLNATVARQQ 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666665555555444433
No 70
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.61 E-value=7.1 Score=43.05 Aligned_cols=34 Identities=15% Similarity=0.237 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 242 RSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 242 RSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
++|.+=++-|..||+++...+..-..|..+|...
T Consensus 481 ~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eE 514 (697)
T PF09726_consen 481 QARQQDKQSLQQLEKRLAEERRQRASLEKQLQEE 514 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555444444444443
No 71
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.53 E-value=11 Score=40.83 Aligned_cols=66 Identities=15% Similarity=0.214 Sum_probs=35.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRI 293 (363)
Q Consensus 228 KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL 293 (363)
|....+++-..........-+..++.|+..+...+.++..|..+...+......|..|+..|+.+.
T Consensus 150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~ 215 (546)
T PF07888_consen 150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQL 215 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555655555555666666666655555555555555555444444444444444333
No 72
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=90.53 E-value=14 Score=35.38 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHH
Q 037696 308 EALKKEIERLRQVY 321 (363)
Q Consensus 308 E~LkkEIerLRql~ 321 (363)
-.|..||...|.++
T Consensus 293 ~~Ld~EIatYR~LL 306 (312)
T PF00038_consen 293 LALDAEIATYRKLL 306 (312)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 34455555555554
No 73
>PRK00736 hypothetical protein; Provisional
Probab=90.51 E-value=1.9 Score=34.07 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDH 277 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~q 277 (363)
.+|.+||.++..++.-+..|...|..-.+
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~ 33 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWK 33 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34778888887777766666655554443
No 74
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=90.41 E-value=2.1 Score=42.80 Aligned_cols=44 Identities=23% Similarity=0.188 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037696 267 ALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 267 ~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq 324 (363)
+=+.+-+.|.-++..|+.+|.+||.|+..| .+||++||+++-..
T Consensus 245 KkRae~E~l~ge~~~Le~rN~~LK~qa~~l--------------erEI~ylKqli~e~ 288 (294)
T KOG4571|consen 245 KKRAEKEALLGELEGLEKRNEELKDQASEL--------------EREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Confidence 344555667778888899999999988775 56777777776543
No 75
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.41 E-value=13 Score=35.27 Aligned_cols=44 Identities=20% Similarity=0.215 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 254 LERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALA 297 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~ 297 (363)
|..++..|..|...|...+..+......+..+-..|++++..+.
T Consensus 54 L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 54 LLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444444444444444443
No 76
>PRK04406 hypothetical protein; Provisional
Probab=90.41 E-value=1.8 Score=34.97 Aligned_cols=23 Identities=17% Similarity=0.320 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
.||.++..|+...+.+...+..|
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~L 30 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEEL 30 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333333
No 77
>PRK09039 hypothetical protein; Validated
Probab=90.18 E-value=7.5 Score=39.02 Aligned_cols=64 Identities=17% Similarity=0.193 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIE 315 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIe 315 (363)
..|+.++..++.+.++...+|..|+++...|..+...|...|...+....-..+..+.|+.+|+
T Consensus 119 ~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 119 GELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555555555555554443333333344444443
No 78
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=90.07 E-value=10 Score=41.84 Aligned_cols=13 Identities=31% Similarity=0.585 Sum_probs=7.3
Q ss_pred CCCCCCCc-ccccc
Q 037696 13 HNWSSFPY-QRMSF 25 (363)
Q Consensus 13 ~~w~~~~~-~~~~~ 25 (363)
.+|=+|.+ ..+++
T Consensus 8 ~nf~s~~~~~~i~f 21 (1164)
T TIGR02169 8 ENFKSFGKKKVIPF 21 (1164)
T ss_pred eCeeeECCeeEEee
Confidence 36777763 44543
No 79
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=90.02 E-value=2.1 Score=35.44 Aligned_cols=46 Identities=28% Similarity=0.348 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
|.=|..+|..|+.+|..|..++..+......|..||..||++....
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~W 65 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 65 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666666777777776665554
No 80
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=89.90 E-value=2.9 Score=35.38 Aligned_cols=66 Identities=24% Similarity=0.375 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 256 RSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 256 ~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
..+..+..+...+..++..++.++..+...|++|-.+|..|......... .+.+..+|..+..-+.
T Consensus 3 ~~~~~~~~~~~~l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk 68 (106)
T PF05837_consen 3 LEILNLQQESRSLQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELK 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHH
Confidence 45667777888888888888888888888888888888888776544443 3455555655555554
No 81
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=89.82 E-value=7.1 Score=36.73 Aligned_cols=77 Identities=21% Similarity=0.252 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRL----ILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~----~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq 324 (363)
.|...||..+..|+.+...++.++..+..++. ....+...|..+-..+-....-.+..++.|+.||.+||....++
T Consensus 136 ~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~~~~~ 215 (221)
T PF05700_consen 136 IHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRKAAEL 215 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999999998865443 23334456777776666665556667788999999999877654
Q ss_pred h
Q 037696 325 N 325 (363)
Q Consensus 325 ~ 325 (363)
.
T Consensus 216 ~ 216 (221)
T PF05700_consen 216 K 216 (221)
T ss_pred h
Confidence 3
No 82
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=89.76 E-value=2.5 Score=37.67 Aligned_cols=75 Identities=21% Similarity=0.322 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHH
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRV--AFLDHQRLILNVDNSALKQRIAALAQDK-IFKDAHQEALKKEIERLRQVY 321 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~el--a~L~qq~~~L~~EN~~LKqrL~~L~qe~-~~KeA~~E~LkkEIerLRql~ 321 (363)
.+..+.+|+..+..|+.|...|...+ ..|......|..|+..|..+|..|.... .+.....+.+.++...++..+
T Consensus 84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~~~~~~~~k~w 161 (169)
T PF07106_consen 84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLEKEYKKWRKEW 161 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666554 4567788888999999999999887633 233445555666665555444
No 83
>PHA02562 46 endonuclease subunit; Provisional
Probab=89.69 E-value=9.7 Score=39.16 Aligned_cols=6 Identities=17% Similarity=0.567 Sum_probs=3.2
Q ss_pred cccccc
Q 037696 115 TMNNIM 120 (363)
Q Consensus 115 ~~~~~~ 120 (363)
.|++++
T Consensus 129 ~f~~~v 134 (562)
T PHA02562 129 SFKQIV 134 (562)
T ss_pred HHhHHh
Confidence 455554
No 84
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=89.68 E-value=5.4 Score=35.48 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
.+++|+.+++.|+.++..+..+|..|.+++..|..+-..|..+|..+
T Consensus 15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~ 61 (143)
T PF12718_consen 15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEA 61 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555554444444444443
No 85
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=89.65 E-value=5.1 Score=43.94 Aligned_cols=69 Identities=20% Similarity=0.351 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKD---AHQEALKKEIERLRQ 319 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~Ke---A~~E~LkkEIerLRq 319 (363)
+..|..++..|+.+...|..++..+.+.+.....++..+..+|..+...+.-+. .++..|.-+|..||.
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 777888888888888888888888888888888888888888888877766666 555566666666654
No 86
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=89.58 E-value=9.8 Score=35.26 Aligned_cols=41 Identities=27% Similarity=0.315 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQ 291 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKq 291 (363)
..+|+.++..|+.++..|..++..|..++..+...+.++++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~ 162 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ 162 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777777777777777666666655555444
No 87
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=89.55 E-value=5.9 Score=42.03 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 037696 306 HQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 306 ~~E~LkkEIerLRql~~qq 324 (363)
..+.|+.|+++|+.++.+-
T Consensus 117 ~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 117 EIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4466777777776666543
No 88
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=89.31 E-value=9.4 Score=42.14 Aligned_cols=41 Identities=15% Similarity=0.160 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQR 292 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqr 292 (363)
+-+..+..+|+.|...|+.++...++++..|+.|.++|+..
T Consensus 541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~ 581 (697)
T PF09726_consen 541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKY 581 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666778888888888888888888888888877777664
No 89
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=89.27 E-value=5.6 Score=37.87 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037696 277 HQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQN 325 (363)
Q Consensus 277 qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~ 325 (363)
..+..|..||.+||+++..|+.+. +..+.+++|.++||.++....
T Consensus 69 ~~~~~l~~en~~L~~e~~~l~~~~----~~~~~l~~en~~L~~lL~~~~ 113 (276)
T PRK13922 69 ASLFDLREENEELKKELLELESRL----QELEQLEAENARLRELLNLKE 113 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCcc
Confidence 445677788888888888876643 223578899999999988543
No 90
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=89.17 E-value=7.8 Score=35.92 Aligned_cols=79 Identities=18% Similarity=0.132 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 240 AQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 240 AqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
.+..-.+....+.+|+.++..+......= .+-..+.+++..|..++..|+.+|..+.. .-....+.+++++..++.
T Consensus 74 l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~---~Dp~~i~~~~~~~~~~~~ 149 (188)
T PF03962_consen 74 LQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSE---NDPEKIEKLKEEIKIAKE 149 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHH
Confidence 33333344444455555555443322211 12222334444555555555555553322 122345677777777776
Q ss_pred HHh
Q 037696 320 VYH 322 (363)
Q Consensus 320 l~~ 322 (363)
.+.
T Consensus 150 ~an 152 (188)
T PF03962_consen 150 AAN 152 (188)
T ss_pred HHH
Confidence 655
No 91
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=89.16 E-value=7.3 Score=41.20 Aligned_cols=73 Identities=23% Similarity=0.194 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKI---------------------FKDAHQE 308 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~---------------------~KeA~~E 308 (363)
.++.|+.++++|..||.+|+..++.|.-.+..|..|-+.+-++|..+..+.. ....+.|
T Consensus 298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELie 377 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIE 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 3567778899999999999999999988888887777666666665543211 1113567
Q ss_pred HHHHHHHHHHHHHh
Q 037696 309 ALKKEIERLRQVYH 322 (363)
Q Consensus 309 ~LkkEIerLRql~~ 322 (363)
.|.+|+++||..-.
T Consensus 378 elrkelehlr~~kl 391 (502)
T KOG0982|consen 378 ELRKELEHLRRRKL 391 (502)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888888876544
No 92
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=89.14 E-value=8.9 Score=39.52 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 244 RVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 244 R~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
=+|-+.++.-||.-+..++.||..|..++..+.+++.+.+.|+..|..+|++.
T Consensus 122 f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~ 174 (401)
T PF06785_consen 122 FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEA 174 (401)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 34556666777777777777888888888888877777777777776666543
No 93
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=89.10 E-value=2.9 Score=41.87 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
|-+.++..=+.|+.+|+.+|..++
T Consensus 79 es~~~l~dRetEI~eLksQL~RMr 102 (305)
T PF15290_consen 79 ESENRLHDRETEIDELKSQLARMR 102 (305)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344444444555555555555544
No 94
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=89.04 E-value=2.1 Score=41.88 Aligned_cols=44 Identities=25% Similarity=0.235 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037696 279 RLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQN 325 (363)
Q Consensus 279 ~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~ 325 (363)
...|..||.+||.++..|..++.. ..+.|++|.++||.++....
T Consensus 68 ~~~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 68 VNNLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCcc
Confidence 345667888888888777444322 22458999999999998643
No 95
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=88.87 E-value=3 Score=36.15 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~ 294 (363)
+|=.+|..|+.....|..+++.|.++...|..||..|+..-.
T Consensus 5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~ 46 (110)
T PRK13169 5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLEND 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666666665333
No 96
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.86 E-value=10 Score=34.01 Aligned_cols=12 Identities=33% Similarity=0.684 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHH
Q 037696 309 ALKKEIERLRQV 320 (363)
Q Consensus 309 ~LkkEIerLRql 320 (363)
.++.++.+++..
T Consensus 162 ~~~~~~~~~~~~ 173 (191)
T PF04156_consen 162 ELRSQLERLQEN 173 (191)
T ss_pred HHHHHHHHHHHH
Confidence 333444444333
No 97
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.75 E-value=18 Score=35.74 Aligned_cols=26 Identities=27% Similarity=0.540 Sum_probs=17.1
Q ss_pred CCCCChhhhhhccccccc---------cccccCCC
Q 037696 58 HNQPHWVDEFLDFSSVRR---------GAHRRSIS 83 (363)
Q Consensus 58 ~~~psW~DefL~fs~~RR---------G~HRRS~S 83 (363)
+..|-=|.+||+....+= ...||+..
T Consensus 10 ~~~~isL~~FL~~~~I~F~dDl~~~~~~~kr~~~~ 44 (325)
T PF08317_consen 10 DYEPISLQDFLNMTGIRFYDDLEMELTTTKRRSTT 44 (325)
T ss_pred CCCCcCHHHHHHHhCceeCCCccccccccCCcccC
Confidence 345666999999865543 34677664
No 98
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.63 E-value=4.7 Score=44.70 Aligned_cols=49 Identities=24% Similarity=0.272 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
.+.||.+...|+.|..+++.+-..|.+.+..|+.||-.|..+|..|.+.
T Consensus 71 ~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~s 119 (717)
T PF09730_consen 71 CEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQS 119 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666666667777777777777777777777653
No 99
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=88.42 E-value=2.8 Score=35.99 Aligned_cols=44 Identities=23% Similarity=0.207 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+|=.++..|+.....|..++..|..+...|..||..|+.+...|
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~L 48 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHL 48 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666544443
No 100
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=88.38 E-value=16 Score=39.95 Aligned_cols=29 Identities=24% Similarity=0.357 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 236 NRQSAQRSRVRKLQYISELERSVTTLQTE 264 (363)
Q Consensus 236 NRESAqRSR~RKkqyIeELE~kV~~Lq~E 264 (363)
|.+.--+--..+...|.+||.++..++.+
T Consensus 109 ~ne~Ls~L~~EqEerL~ELE~~le~~~e~ 137 (617)
T PF15070_consen 109 NNEQLSRLNQEQEERLAELEEELERLQEQ 137 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333346778888888888777654
No 101
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.34 E-value=5.6 Score=39.08 Aligned_cols=47 Identities=26% Similarity=0.298 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPR-------VAFLDHQRLILNVDNSALKQRIAALA 297 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~e-------la~L~qq~~~L~~EN~~LKqrL~~L~ 297 (363)
.++|..+...++.|+..|..+ +..++.++..|..||..|...+..|.
T Consensus 137 ~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~ 190 (290)
T COG4026 137 YEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP 190 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 344444455555544444444 44444455555555555555444443
No 102
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=88.33 E-value=11 Score=30.26 Aligned_cols=64 Identities=25% Similarity=0.313 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
.+=..++..|..|...|+.+.-.+......|...+..+...+..+.. -.+.+..++..|+..+.
T Consensus 8 ~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~-------~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 8 AEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKK-------KLEELEKELESLEERLK 71 (74)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence 34455666777777777766666666555566666665555555543 33566777777776554
No 103
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=88.26 E-value=13 Score=30.58 Aligned_cols=82 Identities=20% Similarity=0.232 Sum_probs=36.5
Q ss_pred HhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHH
Q 037696 235 ANRQSAQRSRVRKL------QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNV---DNSALKQRIAALAQDKIFKDA 305 (363)
Q Consensus 235 sNRESAqRSR~RKk------qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~---EN~~LKqrL~~L~qe~~~KeA 305 (363)
.|.+..+.+-.++. ..|-+|..+...|..+...|..+-..+..+...+.. +-..|+.++..+..+..-.+.
T Consensus 9 ~n~e~v~~~l~~R~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~ 88 (108)
T PF02403_consen 9 ENPEEVRENLKKRGGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEE 88 (108)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHcCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHH
Confidence 37776666655553 334444444444555554444444444444333332 223344444444333322233
Q ss_pred HHHHHHHHHHH
Q 037696 306 HQEALKKEIER 316 (363)
Q Consensus 306 ~~E~LkkEIer 316 (363)
....+..++..
T Consensus 89 ~~~~~e~~l~~ 99 (108)
T PF02403_consen 89 QLKELEEELNE 99 (108)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 104
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=88.06 E-value=5.1 Score=39.57 Aligned_cols=9 Identities=33% Similarity=0.604 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 037696 313 EIERLRQVY 321 (363)
Q Consensus 313 EIerLRql~ 321 (363)
||.+|+..+
T Consensus 277 Ev~~Lk~~~ 285 (325)
T PF08317_consen 277 EVKRLKAKV 285 (325)
T ss_pred HHHHHHHHH
Confidence 344444433
No 105
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=88.03 E-value=3.5 Score=40.17 Aligned_cols=65 Identities=22% Similarity=0.347 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037696 246 RKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 246 RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq 324 (363)
+=.+|.+..++....++..-..-+.+...+.++...|+.||..|+.++. .|++|+..||.++.+.
T Consensus 191 ~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~--------------~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 191 KDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVE--------------QLKKELATLRRLFLQL 255 (269)
T ss_pred CCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhh
Confidence 3356777777776666665555555556666677777777777777554 4567778888877753
No 106
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.58 E-value=4.8 Score=35.90 Aligned_cols=43 Identities=30% Similarity=0.487 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
|.+|..++..|..++..|..++..|.... -|.+|+..+..|..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~-----t~~el~~~i~~l~~ 123 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEP-----TNEELREEIEELEE 123 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHH
Confidence 66777777777777777776666665433 24445555555544
No 107
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.53 E-value=20 Score=33.60 Aligned_cols=49 Identities=22% Similarity=0.305 Sum_probs=21.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 228 KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
..+++.+++-+.-+.+=..-+..+..++.++..|+-|+..|..++..|.
T Consensus 72 ~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle 120 (201)
T PF13851_consen 72 EELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLE 120 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554444444444444444444444444444444444333333
No 108
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=87.45 E-value=7.1 Score=40.20 Aligned_cols=83 Identities=19% Similarity=0.317 Sum_probs=51.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 037696 229 RVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRV--------------AFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 229 R~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~el--------------a~L~qq~~~L~~EN~~LKqrL~ 294 (363)
|+|.+.-|-|--+.-|.- +++-..+.++|+..|..|..++ ..|+.-...+..||..|..+|.
T Consensus 76 kirk~~e~~eglr~i~es----~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~ 151 (401)
T PF06785_consen 76 KIRKITEKDEGLRKIRES----VEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLD 151 (401)
T ss_pred HHHHHHhccHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHH
Confidence 555566665655544432 2233333445555555555444 3455566778889999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 037696 295 ALAQDKIFKDAHQEALKKEIE 315 (363)
Q Consensus 295 ~L~qe~~~KeA~~E~LkkEIe 315 (363)
++.+++.-|+.+...|-+|+.
T Consensus 152 ~l~~e~~Ekeeesq~LnrELa 172 (401)
T PF06785_consen 152 ALQQECGEKEEESQTLNRELA 172 (401)
T ss_pred HHHHHHhHhHHHHHHHHHHHH
Confidence 999988777766666655544
No 109
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=87.38 E-value=9 Score=35.58 Aligned_cols=59 Identities=19% Similarity=0.121 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDA 305 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA 305 (363)
-...++|=..+...|..-|.-|+.++......+..|..++..|...+..+..+...|+.
T Consensus 65 ~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~ 123 (182)
T PF15035_consen 65 ALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEA 123 (182)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777888888888888888888888888888888888888888777776664
No 110
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=87.26 E-value=5.2 Score=40.27 Aligned_cols=64 Identities=27% Similarity=0.430 Sum_probs=48.4
Q ss_pred HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 252 SELERSVT---TLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 252 eELE~kV~---~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
++|.++.. ..+.|+..|..++..|++++..+..||.+|.+.|... |++. ..|..|+..|+..|.
T Consensus 220 eELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s------ke~Q-~~L~aEL~elqdkY~ 286 (306)
T PF04849_consen 220 EELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQAS------KESQ-RQLQAELQELQDKYA 286 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------HHHH-HHHHHHHHHHHHHHH
Confidence 44555444 3567888899999999999999999999999998875 3333 457777777777775
No 111
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=87.23 E-value=7.4 Score=32.94 Aligned_cols=60 Identities=23% Similarity=0.326 Sum_probs=32.9
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 239 SAQRSRVRKL-QYISELERSVTTLQTEVSAL--SPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 239 SAqRSR~RKk-qyIeELE~kV~~Lq~ENs~L--s~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.|.+.+..+. +.+.+++.++..++.+...| ...+..|+-....+..+-+.|..+|..+..
T Consensus 31 ~a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~ 93 (106)
T PF10805_consen 31 YAKREDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSH 93 (106)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4444444443 34444456666666655555 555555555555555666666666665544
No 112
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=87.01 E-value=10 Score=43.77 Aligned_cols=89 Identities=19% Similarity=0.221 Sum_probs=55.8
Q ss_pred HHHHhHHHHHHHHHH----HHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 037696 232 RILANRQSAQRSRVR----KLQY------ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKI 301 (363)
Q Consensus 232 R~LsNRESAqRSR~R----Kkqy------IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~ 301 (363)
-+|+++..|.|.+.= +..| ..+...++++|+.|...+..++..+.+.+......+..|+.++..+...+.
T Consensus 414 erLK~dl~AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~ 493 (1041)
T KOG0243|consen 414 ERLKRDLAAAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQ 493 (1041)
T ss_pred HHHHHHHHHhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 346677777775421 1222 234445566666666667777777777777666677777777777776666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037696 302 FKDAHQEALKKEIERLRQV 320 (363)
Q Consensus 302 ~KeA~~E~LkkEIerLRql 320 (363)
.+.-+.+.+++|+..++..
T Consensus 494 ~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 494 NKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666677776666554
No 113
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=86.82 E-value=0.036 Score=56.22 Aligned_cols=55 Identities=33% Similarity=0.283 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 037696 221 GDTIIDPKRVKRILANRQSAQR---SRVRKLQYISELERSVTTLQ-TEVSALSPRVAFL 275 (363)
Q Consensus 221 ~~~~~D~KR~RR~LsNRESAqR---SR~RKkqyIeELE~kV~~Lq-~ENs~Ls~ela~L 275 (363)
.....+.|++.|+.+|+.+|.+ +|.||+.+...|..+|+.|+ .++..|..++..|
T Consensus 147 ~~~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~L 205 (395)
T KOG1414|consen 147 LTPEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPL 205 (395)
T ss_pred CCCcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccc
Confidence 3466789999999999999999 99999999999999999999 7666655554444
No 114
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=86.81 E-value=7.4 Score=39.20 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=10.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696 292 RIAALAQDKIFKDAHQEALKKEIERL 317 (363)
Q Consensus 292 rL~~L~qe~~~KeA~~E~LkkEIerL 317 (363)
+|..|..++..|--.+....+||.+|
T Consensus 214 qia~LseELa~k~Ee~~rQQEEIt~L 239 (306)
T PF04849_consen 214 QIASLSEELARKTEENRRQQEEITSL 239 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433333333333333444443
No 115
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.79 E-value=16 Score=39.57 Aligned_cols=44 Identities=27% Similarity=0.337 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 037696 277 HQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV 320 (363)
Q Consensus 277 qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql 320 (363)
..+..|++|...+|.++..|+.++.--.+++..|..+|.++|..
T Consensus 148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33344555555555555555554444344445555555555543
No 116
>PRK00846 hypothetical protein; Provisional
Probab=86.67 E-value=4.7 Score=33.06 Aligned_cols=7 Identities=29% Similarity=0.638 Sum_probs=3.3
Q ss_pred CCCCCCC
Q 037696 342 PPQQPPS 348 (363)
Q Consensus 342 ~v~~~~~ 348 (363)
.-+||||
T Consensus 70 dE~PPPH 76 (77)
T PRK00846 70 DEPPPPH 76 (77)
T ss_pred CCCCcCC
Confidence 3445554
No 117
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=86.54 E-value=15 Score=39.73 Aligned_cols=60 Identities=20% Similarity=0.350 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 239 SAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 239 SAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.+.+.|..=..-+.+++..+..|++|...+..++..|+.+...|..||..|...|+.+..
T Consensus 131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~ 190 (546)
T KOG0977|consen 131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARK 190 (546)
T ss_pred HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 333333333344555666777788888888888888888888888888888888887765
No 118
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.54 E-value=10 Score=37.61 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 245 VRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 245 ~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
..+..-+.+|+..+..++.+...|..++..+..+...+..++..+++.|..|.++
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~e 88 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKE 88 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567788888888888888888888888888888888888777777777654
No 119
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=85.70 E-value=22 Score=36.09 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----------------HhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037696 273 AFLDHQRLILNVDNSALKQRIAAL----------------AQDKIFKDAHQEALKKEIERLRQVYHQQNI 326 (363)
Q Consensus 273 a~L~qq~~~L~~EN~~LKqrL~~L----------------~qe~~~KeA~~E~LkkEIerLRql~~qq~~ 326 (363)
..|..+...|..|++.|..+|..- .....-..++...|+.||.|||+.+.....
T Consensus 181 N~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~ 250 (310)
T PF09755_consen 181 NRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQ 250 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778888888888887630 111233456777899999999988875444
No 120
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=85.54 E-value=13 Score=34.63 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 269 SPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVY 321 (363)
Q Consensus 269 s~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~ 321 (363)
..++..=++++..|..-|..||.+|..... .|+.|..||.+|+.-+
T Consensus 66 l~rLeEEqqR~~~L~qvN~lLReQLEq~~~-------~N~~L~~dl~klt~~~ 111 (182)
T PF15035_consen 66 LIRLEEEQQRSEELAQVNALLREQLEQARK-------ANEALQEDLQKLTQDW 111 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 333334455666666777777777666533 4455555555554433
No 121
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=85.51 E-value=4.3 Score=34.46 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 265 VSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 265 Ns~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
...|..++..+++++..|..+|..|+.+|..|..
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445555555555556666777777787777755
No 122
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=85.46 E-value=15 Score=32.96 Aligned_cols=41 Identities=17% Similarity=0.238 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 256 RSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 256 ~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
.++.+++..+..+..++..+......+..+.+.++.++..+
T Consensus 95 ~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l 135 (191)
T PF04156_consen 95 EELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSL 135 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333333333333333
No 123
>PRK04863 mukB cell division protein MukB; Provisional
Probab=85.25 E-value=22 Score=42.50 Aligned_cols=13 Identities=23% Similarity=0.608 Sum_probs=9.1
Q ss_pred CCCCCCCcccccc
Q 037696 13 HNWSSFPYQRMSF 25 (363)
Q Consensus 13 ~~w~~~~~~~~~~ 25 (363)
.||-.|.+..+++
T Consensus 13 ~N~~~~~~~~~~f 25 (1486)
T PRK04863 13 VNWNGFFARTFDL 25 (1486)
T ss_pred ecccCccceEEEe
Confidence 4888888766644
No 124
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=85.05 E-value=14 Score=33.24 Aligned_cols=72 Identities=19% Similarity=0.175 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
+.....+...+..+..+..++..|......-...-..|+..+........-.+...+.|+.|-+.||.-+..
T Consensus 29 ~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~ENe~lR~Wa~t 100 (135)
T TIGR03495 29 ERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKRENEDLRRWADT 100 (135)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhcC
Confidence 334444555666666667777777666666666777788888877777777777888999999999987774
No 125
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=85.01 E-value=8.1 Score=35.01 Aligned_cols=47 Identities=21% Similarity=0.271 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLD-HQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~-qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.+||...-.++...++|+.++..++ .+...|..++..|+.++..|.+
T Consensus 47 ~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 47 SDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555556666666666665543 3445556666666666666554
No 126
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=84.97 E-value=20 Score=29.41 Aligned_cols=72 Identities=18% Similarity=0.294 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHhhh
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK-IFKDAHQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~-~~KeA~~E~LkkEIerLRql~~qq 324 (363)
..++.+..+...+..+...+..+-..++.++..=..|...+|+.|-.|+... .+| +...+||.+||.-+.+.
T Consensus 4 elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK----~~YEeEI~rLr~eLe~r 76 (79)
T PF08581_consen 4 ELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMK----QQYEEEIARLRRELEQR 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhh
Confidence 4466667777777777777777888888888888899999999999998754 223 35679999999877643
No 127
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=84.97 E-value=28 Score=32.60 Aligned_cols=39 Identities=21% Similarity=0.388 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 284 VDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 284 ~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
..|..++.++.....-..--......|..||.+|++.+.
T Consensus 150 L~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 150 LENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444333222223355677888888887654
No 128
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=84.91 E-value=12 Score=37.57 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=49.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 229 RVKRILANRQSAQRSRVRKLQYISELE--------------RSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 229 R~RR~LsNRESAqRSR~RKkqyIeELE--------------~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~ 294 (363)
|+.-|..+-+--++-|.-|+=.|+.|| .++..|+.||..|......|+.....|..+-..=..+|.
T Consensus 19 KIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~ 98 (307)
T PF10481_consen 19 KIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVN 98 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHH
Confidence 444444555555555555555555555 344445555555555555555555555555444444555
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 295 ALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 295 ~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
-|+.++.--....|.|..||.+++.-+.
T Consensus 99 ~lEgQl~s~Kkqie~Leqelkr~KsELE 126 (307)
T PF10481_consen 99 FLEGQLNSCKKQIEKLEQELKRCKSELE 126 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555443333355666666666665544
No 129
>PF15058 Speriolin_N: Speriolin N terminus
Probab=84.79 E-value=1.2 Score=42.20 Aligned_cols=45 Identities=27% Similarity=0.234 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 037696 272 VAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIER 316 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIer 316 (363)
.+-|.+++..|+.||.+||.++..|.....+|.|+-|....-..|
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLirEN~eLksaL~ea~~~~~~r 51 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLIRENHELKSALGEACAEPSQR 51 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 445677777788888888888888877777777765555544433
No 130
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=84.76 E-value=13 Score=39.29 Aligned_cols=80 Identities=23% Similarity=0.230 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--------
Q 037696 245 VRKLQYISELERSVTT--------------LQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIF-------- 302 (363)
Q Consensus 245 ~RKkqyIeELE~kV~~--------------Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~-------- 302 (363)
.=|..|-+|||+++.. ...+...+..++..|.+++..--.||..|.+.+.+-++.+.-
T Consensus 389 AMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQrEnQEL 468 (593)
T KOG4807|consen 389 AMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQRENQEL 468 (593)
T ss_pred HHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 3588999999987653 345677788889999999988888998888887654432211
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhhh
Q 037696 303 ---KDAHQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 303 ---KeA~~E~LkkEIerLRql~~qq 324 (363)
...++-.|..||.+||-++.-+
T Consensus 469 naHNQELnnRLaaEItrLRtlltgd 493 (593)
T KOG4807|consen 469 NAHNQELNNRLAAEITRLRTLLTGD 493 (593)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccC
Confidence 1124566789999999988743
No 131
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=84.67 E-value=19 Score=36.20 Aligned_cols=55 Identities=25% Similarity=0.266 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 261 LQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 261 Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
|+.-...|...+..-+.+...|+......|.+|..|+++ ...++.|++|.++...
T Consensus 79 lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqe-------lkr~KsELErsQ~~~~ 133 (307)
T PF10481_consen 79 LEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQE-------LKRCKSELERSQQAAS 133 (307)
T ss_pred HHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhc
Confidence 344444455555555566666666666777777776663 3456677777666554
No 132
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=84.64 E-value=2.2 Score=41.66 Aligned_cols=38 Identities=21% Similarity=0.197 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Q 037696 257 SVTTLQTEVSALSPRVAFLDHQRL----ILNVDNSALKQRIA 294 (363)
Q Consensus 257 kV~~Lq~ENs~Ls~ela~L~qq~~----~L~~EN~~LKqrL~ 294 (363)
.+..|..||.+|+.++..|.++.. .|..||..||+-|.
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~LL~ 108 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRELLN 108 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445567788888877766633333 36777777777443
No 133
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.63 E-value=11 Score=41.22 Aligned_cols=74 Identities=20% Similarity=0.211 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 225 IDPKRVKRILANRQSAQRSRVRKLQYI----SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 225 ~D~KR~RR~LsNRESAqRSR~RKkqyI----eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.|.|++|..+.|-++-..+-.++..-+ ..+|.+--.|+.|..++.-+-+.|.+.+..|+.||-.|..++..|.+
T Consensus 114 neLKq~r~el~~~q~E~erl~~~~sd~~e~~~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~ 191 (772)
T KOG0999|consen 114 NELKQLRQELTNVQEENERLEKVHSDLKESNAAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQ 191 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhh
Confidence 466777777766655443333332222 12333333444555555555555555555555555555555555544
No 134
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=84.35 E-value=12 Score=40.31 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDA 305 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA 305 (363)
+.|..+..+...++.||+.|..++..++++...+..|+.+|.+-|.+..+...--.+
T Consensus 219 eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~a 275 (596)
T KOG4360|consen 219 EELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTA 275 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345556666777889999999999999999999999999999999887665433333
No 135
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=84.33 E-value=31 Score=31.11 Aligned_cols=14 Identities=21% Similarity=0.261 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHH
Q 037696 248 LQYISELERSVTTL 261 (363)
Q Consensus 248 kqyIeELE~kV~~L 261 (363)
+.+|..||+.+...
T Consensus 23 e~~v~~LEreLe~~ 36 (140)
T PF10473_consen 23 EDHVESLERELEMS 36 (140)
T ss_pred HHHHHHHHHHHHHH
Confidence 34555555555443
No 136
>PHA02562 46 endonuclease subunit; Provisional
Probab=84.13 E-value=55 Score=33.76 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 244 RVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALA 297 (363)
Q Consensus 244 R~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~ 297 (363)
+......+.+|+.++..+......+..+...|+.+...|..++..+..+|..+.
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~ 385 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQ 385 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHH
Confidence 333344444444444444444433333334444444444444443433443333
No 137
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=84.03 E-value=9.3 Score=37.63 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
+.+|......|.....++..+...|...+..|..|-.+++.+|..|+.+.-.-+.....|..|+.+|+..+.
T Consensus 130 ~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 130 YMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 345556666666666666666666767777777777777777777666554433333444456666665544
No 138
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=83.99 E-value=19 Score=34.74 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 254 LERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
||.+...+..+-..|..+++........+..+..+|+.+.+.+..
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~ 193 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQD 193 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 333344444444444444444444444445555555555554443
No 139
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=83.97 E-value=39 Score=31.99 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.++++..+...|..+...|..++..|+..+..|...-..+++++..|.+
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~ 91 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555444444444444444444444444444433
No 140
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=83.87 E-value=5.4 Score=34.98 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 254 LERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
+=.+|..|+.....|..++..|.++...|..||..|+-+...|...
T Consensus 6 iFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~R 51 (114)
T COG4467 6 IFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRER 51 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHH
Confidence 4456777777778888888888888888888888777766666543
No 141
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=83.74 E-value=12 Score=37.73 Aligned_cols=42 Identities=21% Similarity=0.271 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRI 293 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL 293 (363)
++|..++..|+.+|..|..++.....++..|..||+.||+.-
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~s 64 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREAS 64 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555555555433
No 142
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=83.59 E-value=20 Score=33.20 Aligned_cols=56 Identities=21% Similarity=0.277 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 258 VTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 258 V~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
...|..++..|..++..|..+...|......+..+..... .........||+.|+.
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~------~~~~k~~~~ei~~lk~ 177 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELR------QEEEKKHQEEIDFLKK 177 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444444444443322 1222334455555554
No 143
>PRK12704 phosphodiesterase; Provisional
Probab=83.54 E-value=19 Score=38.33 Aligned_cols=19 Identities=21% Similarity=0.099 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037696 278 QRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 278 q~~~L~~EN~~LKqrL~~L 296 (363)
++..+..+...--++++.|
T Consensus 132 ~~~~~~~~~~~~l~~~a~l 150 (520)
T PRK12704 132 ELEELIEEQLQELERISGL 150 (520)
T ss_pred HHHHHHHHHHHHHHHHhCC
Confidence 3333333333333333333
No 144
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.26 E-value=15 Score=41.75 Aligned_cols=15 Identities=33% Similarity=0.180 Sum_probs=8.7
Q ss_pred CCCCCCCCCCCCCCCC
Q 037696 153 ASSSNPSTPSDQNSNN 168 (363)
Q Consensus 153 ~~~~~~s~~~~~~~~~ 168 (363)
.+.+..+++| .++++
T Consensus 276 Vpp~~r~~rs-~~sis 290 (1118)
T KOG1029|consen 276 VPPSFRSSRS-ANSIS 290 (1118)
T ss_pred cCcccccccC-CCCcc
Confidence 4566666666 45554
No 145
>PF15294 Leu_zip: Leucine zipper
Probab=83.25 E-value=7.6 Score=38.65 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 254 LERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
|...+..|+.||..|+.++..++.++.....|+..|..+|..|..
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~ 174 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD 174 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788899999999999999999999999999999999988866
No 146
>PRK02224 chromosome segregation protein; Provisional
Probab=83.21 E-value=23 Score=38.88 Aligned_cols=8 Identities=13% Similarity=0.181 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 037696 288 ALKQRIAA 295 (363)
Q Consensus 288 ~LKqrL~~ 295 (363)
.|+.++..
T Consensus 631 ~~r~~i~~ 638 (880)
T PRK02224 631 EKRERKRE 638 (880)
T ss_pred HHHHHHHH
Confidence 33333333
No 147
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.15 E-value=36 Score=35.85 Aligned_cols=71 Identities=20% Similarity=0.267 Sum_probs=40.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 228 KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
|+++.+.++=+.-.++....++....|+..++.|+.++..+..++.........+...+..+..+|..|..
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 66666655555555555555566666777776666666666666655554444444444444444444433
No 148
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=82.67 E-value=19 Score=37.55 Aligned_cols=17 Identities=18% Similarity=0.356 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHh
Q 037696 306 HQEALKKEIERLRQVYH 322 (363)
Q Consensus 306 ~~E~LkkEIerLRql~~ 322 (363)
..+.++++|..|+..+.
T Consensus 153 ~~~~~~~~l~~l~~~l~ 169 (525)
T TIGR02231 153 RIRELEKQLSELQNELN 169 (525)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555666666655443
No 149
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=82.67 E-value=7.6 Score=42.12 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 264 EVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 264 ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
....|..+++.|.+++..|..||..||+||..|..+
T Consensus 303 y~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E 338 (655)
T KOG4343|consen 303 YMLGLEARLQALLSENEQLKKENATLKRQLDELVSE 338 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 345688999999999999999999999999998764
No 150
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=82.60 E-value=25 Score=40.86 Aligned_cols=94 Identities=18% Similarity=0.131 Sum_probs=65.5
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 037696 224 IIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFK 303 (363)
Q Consensus 224 ~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~K 303 (363)
+.-.+.+|-.|.||.--..--+++-.-++++-.+.-.|+.++..|+.++..|++.+..+...+.+|...-. .-
T Consensus 369 Lts~ralkllLEnrrlt~tleelqsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K-------~L 441 (1195)
T KOG4643|consen 369 LTSDRALKLLLENRRLTGTLEELQSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEK-------KL 441 (1195)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 33456788899999888888888888888888888888888888888888887766655444443333222 22
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 037696 304 DAHQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 304 eA~~E~LkkEIerLRql~~qq 324 (363)
..+++.|..|+...+..+..+
T Consensus 442 ~~E~ekl~~e~~t~~~s~~rq 462 (1195)
T KOG4643|consen 442 QFELEKLLEETSTVTRSLSRQ 462 (1195)
T ss_pred HHHHHHHHHHHHHHHHhHHHH
Confidence 234566667776666666655
No 151
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=82.44 E-value=19 Score=39.13 Aligned_cols=46 Identities=17% Similarity=0.344 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~ 294 (363)
.|+..++.+-..+......|..++...+.++..|..+|..||.+|.
T Consensus 280 ~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 280 AYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555556666666666666666666666666665554
No 152
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=82.38 E-value=4.1 Score=31.23 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 246 RKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 246 RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
||+..|+|||.+.+.-+ |...+. -......+..|..||..|+.+|..+
T Consensus 1 kw~~Rl~ELe~klkaer-E~R~~d--~~~a~~rl~~l~~EN~~Lr~eL~~~ 48 (52)
T PF12808_consen 1 KWLLRLEELERKLKAER-EARSLD--RSAARKRLSKLEGENRLLRAELERL 48 (52)
T ss_pred CHHHHHHHHHHHHHHhH-HhccCC--chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788889988877543 211111 1223344445566676666666544
No 153
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=82.35 E-value=9.5 Score=36.84 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
-+-+|..++..|+.|+..|+.+++.+.+++..+....+.|-++|..
T Consensus 55 ~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 55 LLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478888999999999999998888888777777666666665554
No 154
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=82.27 E-value=10 Score=36.19 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 037696 260 TLQTEVSALSPRVAFLDHQRL---ILNVDNSALKQRI 293 (363)
Q Consensus 260 ~Lq~ENs~Ls~ela~L~qq~~---~L~~EN~~LKqrL 293 (363)
.|..||.+|+.++..|+.+.. .|..||..||.-|
T Consensus 73 ~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL 109 (276)
T PRK13922 73 DLREENEELKKELLELESRLQELEQLEAENARLRELL 109 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444443333322 4556666666544
No 155
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=82.25 E-value=42 Score=32.76 Aligned_cols=55 Identities=18% Similarity=0.260 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 245 VRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 245 ~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
.++...+..|...+..++.....|..++..|......|..+-..|+.++..++..
T Consensus 85 v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~ 139 (239)
T COG1579 85 VKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139 (239)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455667777776666666677777776666666666666666666665543
No 156
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=82.10 E-value=39 Score=39.06 Aligned_cols=74 Identities=23% Similarity=0.274 Sum_probs=56.7
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVA-----FLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 226 D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela-----~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
|-...-|=|.||+--+-+++|.-+|-+++|.+-..|....+.|..=+. .+.+-...++.|-.+||+++.....+
T Consensus 1026 d~~~r~~el~~rq~~el~~~~~~~~~~e~e~k~~hl~~~~~~l~kl~~eaq~~Q~k~LK~~~e~e~kElk~~l~kkr~e 1104 (1189)
T KOG1265|consen 1026 DNAGRVRELVNRQTQELLEMRREQYEEEFELKEEHLKEQISLLRKLLSEAQTNQTKALKESLEKETKELKKKLDKKRME 1104 (1189)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555678999999999999999999999999999998887765433 33344456778888888888765544
No 157
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=81.98 E-value=35 Score=30.15 Aligned_cols=59 Identities=20% Similarity=0.298 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037696 268 LSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNI 326 (363)
Q Consensus 268 Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~~ 326 (363)
|..+-..++......+.|-.+|+.+|+.|+++..-.+.+++.|.+.|.-|-.++.+...
T Consensus 9 LQ~Ew~r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~ 67 (134)
T PF08232_consen 9 LQTEWHRFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERA 67 (134)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445555555666666666666666666666666666666666655555554443
No 158
>smart00338 BRLZ basic region leucin zipper.
Probab=81.92 E-value=6.5 Score=29.93 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 272 VAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+..|+.+...|..+|..|+.++..|
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l 52 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERL 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555566665555554
No 159
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=81.81 E-value=43 Score=33.34 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+.+++.+++.|+.|...|..++..|+.+...|..|-..|+.++..|
T Consensus 45 ~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l 90 (314)
T PF04111_consen 45 IEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEEL 90 (314)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555555554444
No 160
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=81.78 E-value=19 Score=39.17 Aligned_cols=77 Identities=23% Similarity=0.307 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHHHHHHHHHHHHhHH-
Q 037696 250 YISELERSVTTLQTEVSALSPRVAF----------------------------LDHQRLILNVDNSALKQRIAALAQDK- 300 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~----------------------------L~qq~~~L~~EN~~LKqrL~~L~qe~- 300 (363)
.+.+|+..+..|+.++..|..+|.. -......|..||..|+.+|..|+...
T Consensus 511 ~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~~ 590 (722)
T PF05557_consen 511 EIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGNS 590 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 4566666666666666666665554 13556788899999999996554211
Q ss_pred ------------------HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037696 301 ------------------IFKDAHQEALKKEIERLRQVYHQQNI 326 (363)
Q Consensus 301 ------------------~~KeA~~E~LkkEIerLRql~~qq~~ 326 (363)
.-..+..+.+.+...||+.+|.....
T Consensus 591 ~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~ 634 (722)
T PF05557_consen 591 QPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQ 634 (722)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11123456677888899998886543
No 161
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.71 E-value=28 Score=40.43 Aligned_cols=71 Identities=18% Similarity=0.268 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVY 321 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~ 321 (363)
+.+|+..++.+...+.+-+.++..-++.+..|..|-.+|...+..+.++..-..-..+.|+.|+..|+..+
T Consensus 789 lkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv 859 (1174)
T KOG0933|consen 789 LKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKV 859 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555666666666666666665555555555556666665555443
No 162
>PRK02119 hypothetical protein; Provisional
Probab=81.59 E-value=13 Score=29.80 Aligned_cols=27 Identities=15% Similarity=0.242 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDH 277 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~q 277 (363)
+..||.++..|+...+.+...+..|..
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~ 30 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQ 30 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778887777766666666655543
No 163
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=81.45 E-value=43 Score=38.70 Aligned_cols=10 Identities=10% Similarity=0.179 Sum_probs=4.7
Q ss_pred hhhhcccccc
Q 037696 135 EQLMSMFSDD 144 (363)
Q Consensus 135 ~q~~smf~d~ 144 (363)
.-+..+|.+.
T Consensus 607 ~~~~~~l~~t 616 (1163)
T COG1196 607 PAVRFVLGDT 616 (1163)
T ss_pred HHHHHHhCCe
Confidence 3444455544
No 164
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=81.24 E-value=18 Score=28.29 Aligned_cols=31 Identities=32% Similarity=0.355 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRL 280 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~ 280 (363)
.|++|...|..|...+..|+..+..|.....
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~ 34 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDVNALRADVQ 34 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666666555555544333
No 165
>PRK02224 chromosome segregation protein; Provisional
Probab=81.11 E-value=47 Score=36.51 Aligned_cols=10 Identities=10% Similarity=-0.007 Sum_probs=4.3
Q ss_pred ccccccCCCC
Q 037696 116 MNNIMSSSDA 125 (363)
Q Consensus 116 ~~~~~~~~~~ 125 (363)
|.|++-++.+
T Consensus 129 f~~~~~i~Qg 138 (880)
T PRK02224 129 FVNCAYVRQG 138 (880)
T ss_pred hcceeEeecc
Confidence 4444444443
No 166
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=81.08 E-value=28 Score=35.94 Aligned_cols=69 Identities=23% Similarity=0.252 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDN---SALKQRIAALAQDKIFKDAHQEALKKEIERL 317 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN---~~LKqrL~~L~qe~~~KeA~~E~LkkEIerL 317 (363)
..|-+|..+...|+.+...|..+...+.++...+.... ..|+.++..|..+..-.++..+.+..++..+
T Consensus 28 d~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (425)
T PRK05431 28 DELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEEL 99 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555444322111 1344444444443333333444455555443
No 167
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=81.08 E-value=7 Score=34.08 Aligned_cols=45 Identities=33% Similarity=0.380 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 254 LERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
|-.+|-.|+.-...|+.++..+.++...|..||+.|-|-|+.|-.
T Consensus 61 lItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNLMS 105 (120)
T KOG3650|consen 61 LITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENLMS 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHh
Confidence 456777788888889999999999999999999999998887744
No 168
>PRK04406 hypothetical protein; Provisional
Probab=80.98 E-value=14 Score=29.84 Aligned_cols=33 Identities=12% Similarity=0.108 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLI 281 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~ 281 (363)
++|.+||.++..++.-+..|...|...+++...
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~ 43 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITK 43 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777777777777766665544433
No 169
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=80.73 E-value=2.9 Score=32.95 Aligned_cols=30 Identities=33% Similarity=0.426 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 263 TEVSALSPRVAFLDHQRLILNVDNSALKQR 292 (363)
Q Consensus 263 ~ENs~Ls~ela~L~qq~~~L~~EN~~LKqr 292 (363)
.|+..|+.++..|..++..|+.||..||+.
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~ 43 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQN 43 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355566666666666666677777777764
No 170
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=80.38 E-value=8.6 Score=43.16 Aligned_cols=59 Identities=24% Similarity=0.296 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 037696 260 TLQTEVSALSPRVAFLDHQRLI-------------------LNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLR 318 (363)
Q Consensus 260 ~Lq~ENs~Ls~ela~L~qq~~~-------------------L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLR 318 (363)
-|+.||+.|+++|..|.+++.+ |..=|..|..+|.+....+.+-...+|+|.+.|+.+|
T Consensus 391 plrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 391 PLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 3566888888888888776643 4445666667776655544444445556655554433
No 171
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=80.26 E-value=46 Score=33.73 Aligned_cols=67 Identities=21% Similarity=0.192 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 037696 238 QSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKD 304 (363)
Q Consensus 238 ESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~Ke 304 (363)
++++|-....+..+.++|.....-+........+-..|++++..|..||--|+++|.........|+
T Consensus 182 E~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~ke 248 (305)
T PF14915_consen 182 ESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKE 248 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888888889999999888888888888888889999999999999999999987655443333
No 172
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=80.14 E-value=20 Score=32.57 Aligned_cols=39 Identities=33% Similarity=0.400 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 037696 282 LNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV 320 (363)
Q Consensus 282 L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql 320 (363)
+..++..++.+++.|..+..-++...+.|++.++.|-.-
T Consensus 152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666677777777776666777778888887776543
No 173
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=79.98 E-value=55 Score=32.40 Aligned_cols=61 Identities=16% Similarity=0.288 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhH
Q 037696 239 SAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLD----HQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 239 SAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~----qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
.=+.-..+-...+..|+.+|..|.+++.....+|.+|. +++-...+.-..|..+|+.+...
T Consensus 71 eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~ 135 (258)
T PF15397_consen 71 ELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDS 135 (258)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33344455566777888888888888888888877763 44444555666666666666554
No 174
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.69 E-value=59 Score=35.58 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVA 273 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela 273 (363)
+++-|.+++.|+.+|..|..+|.
T Consensus 303 ie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 303 IEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555543
No 175
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=79.48 E-value=62 Score=37.45 Aligned_cols=7 Identities=29% Similarity=0.577 Sum_probs=2.9
Q ss_pred cccchhh
Q 037696 129 FDRLDDE 135 (363)
Q Consensus 129 fdr~dd~ 135 (363)
++.++.+
T Consensus 619 v~~l~~A 625 (1163)
T COG1196 619 VDDLEQA 625 (1163)
T ss_pred ecCHHHH
Confidence 3444443
No 176
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=79.46 E-value=13 Score=29.15 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 261 LQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 261 Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
.+.....+..+++.++++...+..||..|+.++..|...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~ 60 (85)
T TIGR02209 22 AQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRH 60 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCH
Confidence 344555667777777777778888888888888888664
No 177
>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]
Probab=79.45 E-value=0.45 Score=48.39 Aligned_cols=47 Identities=28% Similarity=0.350 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 223 TIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALS 269 (363)
Q Consensus 223 ~~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls 269 (363)
..-|+++.|=+.+||.+|-|+|.|||..+..|+.+...+..+|..|.
T Consensus 280 ~~p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~ 326 (395)
T KOG1414|consen 280 EDPDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL 326 (395)
T ss_pred CCchhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence 33456675558899999999999999999999999999999888776
No 178
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=79.11 E-value=74 Score=31.93 Aligned_cols=45 Identities=18% Similarity=0.302 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+.|+..+..|+.+...|...++.+..-.-.|......|+.++..|
T Consensus 147 ~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L 191 (312)
T smart00787 147 EGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQL 191 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555444444444444444444333
No 179
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=79.08 E-value=23 Score=31.59 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+|+.+...+..++..|..++..|..++..+...-..++..+...
T Consensus 25 ~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~ 68 (143)
T PF12718_consen 25 QLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEES 68 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444444444444444444444444444444444444444443
No 180
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=79.02 E-value=7.5 Score=32.58 Aligned_cols=64 Identities=16% Similarity=0.320 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHhh
Q 037696 257 SVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIF--KDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 257 kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~--KeA~~E~LkkEIerLRql~~q 323 (363)
++..|+.-..........+.+....|..|...|+.+|.. ...+ -..+|-.|+.|+.+||..|.+
T Consensus 4 kI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~---nPevtr~A~EN~rL~ee~rrl~~f~~~ 69 (86)
T PF12711_consen 4 KIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEH---NPEVTRFAMENIRLREELRRLQSFYVE 69 (86)
T ss_pred HHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHh---CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444433333344455555556666677777766653 1111 134778899999999998843
No 181
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=78.92 E-value=32 Score=27.59 Aligned_cols=52 Identities=19% Similarity=0.181 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
|-+.|..|-.+-+.|......+...+..|+.+...+..+...|+.++..+..
T Consensus 10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777777777777777777777777777777777655
No 182
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=78.76 E-value=45 Score=29.20 Aligned_cols=42 Identities=14% Similarity=0.218 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRI 293 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL 293 (363)
++|-.+-..|+.-+..|..+...+.+.+..|..+-..++..|
T Consensus 33 ~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 33 GELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333
No 183
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=78.73 E-value=11 Score=43.48 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 280 LILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 280 ~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
..|+.|+-.|+++|..|+.+.-.-.-..|.|..|+..|..
T Consensus 297 ~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq~ 336 (1195)
T KOG4643|consen 297 ATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQV 336 (1195)
T ss_pred CChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 3445555666666666666555544455666666665543
No 184
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=78.46 E-value=28 Score=33.86 Aligned_cols=19 Identities=16% Similarity=0.267 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037696 245 VRKLQYISELERSVTTLQT 263 (363)
Q Consensus 245 ~RKkqyIeELE~kV~~Lq~ 263 (363)
.+.++-+..||..+..++.
T Consensus 16 ~~~~~L~~kLE~DL~~~~~ 34 (248)
T PF08172_consen 16 EEQKELNAKLENDLAKVQA 34 (248)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3444555666666666553
No 185
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=78.41 E-value=17 Score=38.78 Aligned_cols=82 Identities=15% Similarity=0.274 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHH
Q 037696 246 RKLQYISELERSVTTLQ---TEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIF-KDAHQEALKKEIERLRQVY 321 (363)
Q Consensus 246 RKkqyIeELE~kV~~Lq---~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~-KeA~~E~LkkEIerLRql~ 321 (363)
+-|+|+.++-..++.|+ .....|..++...+.+...+..|...|+.++.+.-.-..+ ..+++|.+++||+.||..+
T Consensus 239 ~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e~rnvavek~~lerkl~ea~rl~elreg~e~e~~rkelE~lR~~L 318 (575)
T KOG4403|consen 239 KAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREEQRNVAVEKLDLERKLDEAPRLSELREGVENETSRKELEQLRVAL 318 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhhhhhHHHHHhhhhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 33444444444444433 3444566677777777777777877777777632221111 2467888899999999988
Q ss_pred hhhhhh
Q 037696 322 HQQNIK 327 (363)
Q Consensus 322 ~qq~~~ 327 (363)
..--..
T Consensus 319 ~kAEke 324 (575)
T KOG4403|consen 319 EKAEKE 324 (575)
T ss_pred HHHHHH
Confidence 744333
No 186
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=78.23 E-value=51 Score=33.27 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=48.4
Q ss_pred HHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHH
Q 037696 230 VKRILANRQSAQRSRVRKL-QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKI---FKDA 305 (363)
Q Consensus 230 ~RR~LsNRESAqRSR~RKk-qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~---~KeA 305 (363)
.|.-+.+..++-+++.+.+ +.+-+|-.++..|..+-..+-.+|..|......+...-+.|...+..+....- ..-.
T Consensus 28 kR~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~ 107 (294)
T COG1340 28 KRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGR 107 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 3445555566655544433 34455555555566666666666666655555555555555555544433211 1111
Q ss_pred HHHHHHHHHHHHHHHHh
Q 037696 306 HQEALKKEIERLRQVYH 322 (363)
Q Consensus 306 ~~E~LkkEIerLRql~~ 322 (363)
..+.+.++|++|.....
T Consensus 108 ~~~~ler~i~~Le~~~~ 124 (294)
T COG1340 108 SIKSLEREIERLEKKQQ 124 (294)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 23566777777765443
No 187
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=78.15 E-value=18 Score=33.59 Aligned_cols=38 Identities=18% Similarity=0.265 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696 280 LILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERL 317 (363)
Q Consensus 280 ~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerL 317 (363)
..+..||..|+.++..|......-+.+++.|++++.-+
T Consensus 100 ~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~ 137 (161)
T TIGR02894 100 QALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTI 137 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666553322333344444444333
No 188
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=77.92 E-value=63 Score=37.73 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHhHHHHHHHHHH
Q 037696 239 SAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVD----------NSALKQRIAALAQDKIFKDAHQE 308 (363)
Q Consensus 239 SAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~E----------N~~LKqrL~~L~qe~~~KeA~~E 308 (363)
..++-|.+=+.-|++++.++..|..+...+..++..+..+...|... +..|..++.....+.-.+++..|
T Consensus 679 ~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~~~~~l~~ei~~~~~eIe~~~~~~e 758 (1074)
T KOG0250|consen 679 ELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDISKLEDLAREIKKKEKEIEEKEAPLE 758 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666667778888888888877777777777777766666652 44555555555555555556666
Q ss_pred HHHHHHHHHHH
Q 037696 309 ALKKEIERLRQ 319 (363)
Q Consensus 309 ~LkkEIerLRq 319 (363)
.++.|++++..
T Consensus 759 ~l~~e~e~~~~ 769 (1074)
T KOG0250|consen 759 KLKEELEHIEL 769 (1074)
T ss_pred HHHHHHHHHHH
Confidence 66666665544
No 189
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.85 E-value=19 Score=40.94 Aligned_cols=61 Identities=18% Similarity=0.044 Sum_probs=32.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 234 LANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 234 LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~ 294 (363)
..+-..=+--+.+-.--++.|..+++.|+.|+.+|..+++....++..|..++.-||.||+
T Consensus 656 ~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 656 DDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333333333444444455555555555566666666666655555566666666666655
No 190
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=77.78 E-value=13 Score=28.27 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 272 VAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
+..|+..+..|..+|..|+.++..|..
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~L~~ 54 (64)
T PF00170_consen 28 IEELEEKVEELESENEELKKELEQLKK 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555555555555433
No 191
>PF15058 Speriolin_N: Speriolin N terminus
Probab=77.65 E-value=5.6 Score=37.89 Aligned_cols=40 Identities=20% Similarity=0.277 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.+.|..+++.|-.||.+|+++|..+ .||.+||.-|.+-.+
T Consensus 7 yeGlrhqierLv~ENeeLKKlVrLi--------rEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 7 YEGLRHQIERLVRENEELKKLVRLI--------RENHELKSALGEACA 46 (200)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHH--------HHHHHHHHHHHHhhc
Confidence 4678888999999999999888876 489999987665544
No 192
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=77.42 E-value=12 Score=38.93 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 037696 237 RQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIF 302 (363)
Q Consensus 237 RESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~ 302 (363)
-++|.--|.|-++--...|..+..+..|...|++++..+......|..|+..||.-+..|+...+.
T Consensus 226 eee~aaERerglqteaqvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh 291 (561)
T KOG1103|consen 226 EEEAAAERERGLQTEAQVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQH 291 (561)
T ss_pred hHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 366777888888888888999999999999999999999999999999999999988887665433
No 193
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=77.27 E-value=3.1 Score=35.42 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 251 ISELERSVTTLQTEVSALSPRV--------AFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~el--------a~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
..++|..+..+..|...|+..| +.-......+...|..|+.+| .-+++..+.|..++..|+.++.
T Consensus 10 r~~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l-------~e~~~~l~~lq~qL~~LK~v~~ 82 (100)
T PF06428_consen 10 REEAEQEKEQIESELEELTASLFEEANKMVADARRERAALEEKNEQLEKQL-------KEKEALLESLQAQLKELKTVME 82 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-------THHCHCCCHCTSSSSHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555433 222333333444444444444 3345566778888888888776
Q ss_pred h
Q 037696 323 Q 323 (363)
Q Consensus 323 q 323 (363)
.
T Consensus 83 ~ 83 (100)
T PF06428_consen 83 S 83 (100)
T ss_dssp T
T ss_pred H
Confidence 4
No 194
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.02 E-value=97 Score=32.17 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=7.8
Q ss_pred hhhhccccccC
Q 037696 135 EQLMSMFSDDI 145 (363)
Q Consensus 135 ~q~~smf~d~~ 145 (363)
..+++.|+++.
T Consensus 129 q~l~a~f~~~p 139 (365)
T KOG2391|consen 129 QELIAAFSEDP 139 (365)
T ss_pred HHHHHHhcCCC
Confidence 45677788876
No 195
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=76.99 E-value=52 Score=34.64 Aligned_cols=15 Identities=33% Similarity=0.496 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHh
Q 037696 308 EALKKEIERLRQVYH 322 (363)
Q Consensus 308 E~LkkEIerLRql~~ 322 (363)
|+.++|++.|+..+.
T Consensus 366 eekkreleql~~q~~ 380 (442)
T PF06637_consen 366 EEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566666665554
No 196
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=76.87 E-value=32 Score=31.59 Aligned_cols=78 Identities=22% Similarity=0.252 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 037696 241 QRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV 320 (363)
Q Consensus 241 qRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql 320 (363)
...+..-++.|..|..++...+.+...+..+|..+.. .|...-+.|+.....+..-+.-..+..+.|+++|++++..
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~---~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKD---KLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 4455566677888888888888888888777776653 5677788888888888777666778889999999888754
Q ss_pred H
Q 037696 321 Y 321 (363)
Q Consensus 321 ~ 321 (363)
.
T Consensus 179 I 179 (184)
T PF05791_consen 179 I 179 (184)
T ss_dssp G
T ss_pred H
Confidence 3
No 197
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=76.69 E-value=78 Score=31.61 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=55.3
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 037696 226 DPKRVKRILANRQSAQRSRVRKLQYIS-ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKD 304 (363)
Q Consensus 226 D~KR~RR~LsNRESAqRSR~RKkqyIe-ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~Ke 304 (363)
|.|=.-|.|--+.=--++..|-+...- +|.....+-.---.+|..++..|+++.++...--.=||.+|+.|.+.++-+.
T Consensus 13 d~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc~eRn 92 (277)
T PF15030_consen 13 DLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKCRERN 92 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHHHHHH
Confidence 444333445555555555555555443 4544444444444556666777777666666666677888888877777777
Q ss_pred HHHHHHHHHHHH
Q 037696 305 AHQEALKKEIER 316 (363)
Q Consensus 305 A~~E~LkkEIer 316 (363)
-+...|..|+-|
T Consensus 93 ~Li~~llqel~R 104 (277)
T PF15030_consen 93 RLITHLLQELHR 104 (277)
T ss_pred HHHHHHHHHHHH
Confidence 677777666654
No 198
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=76.61 E-value=34 Score=34.71 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
..|...+...+.+|..|..++..|.+.+..+..++..||++++..
T Consensus 68 ~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~ 112 (319)
T PF09789_consen 68 KNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQ 112 (319)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhh
Confidence 344555555556666666666666666666666666666655543
No 199
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.53 E-value=25 Score=38.64 Aligned_cols=61 Identities=20% Similarity=0.309 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 256 RSVTTLQTEVSALSPRVAFL-------DHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 256 ~kV~~Lq~ENs~Ls~ela~L-------~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
..|..|+.|+..|..++... -+--..|..|...|++++.+|+. +.+.++.|++.++.++++
T Consensus 8 q~ve~lr~eierLT~el~q~t~e~~qaAeyGL~lLeeK~~Lkqq~eElea-------eyd~~R~Eldqtkeal~q 75 (772)
T KOG0999|consen 8 QEVEKLRQEIERLTEELEQTTEEKIQAAEYGLELLEEKEDLKQQLEELEA-------EYDLARTELDQTKEALGQ 75 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433 33345677788888888888854 567888999999999886
No 200
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=76.21 E-value=45 Score=36.69 Aligned_cols=66 Identities=14% Similarity=0.226 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIE 315 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIe 315 (363)
.-.+|+.+|..|+.++..|..+|..++.+...-+.+-.....++........+-+|.......+..
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~ 145 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRR 145 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777888888888888888888877777666666555556666555554444444333333333
No 201
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.94 E-value=41 Score=38.37 Aligned_cols=48 Identities=19% Similarity=0.311 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+|+++|-..+..+.....+|-.+++.+.+....|..||.+|..+++.+
T Consensus 650 k~~e~l~~~~~kyK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~ 697 (970)
T KOG0946|consen 650 KYHEELDDIQQKYKGLIRELDYQIENLKQMEKELQVENEELEEEVQDF 697 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666666666666666555544
No 202
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.73 E-value=37 Score=33.74 Aligned_cols=66 Identities=20% Similarity=0.335 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
.+++.+|..|..+...+..++..++.++..+..|-..|+.+|..+...- ++ .++.|++ |+|.+|..
T Consensus 48 ~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I--~~-r~~~l~~---raRAmq~n 113 (265)
T COG3883 48 KNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENI--VE-RQELLKK---RARAMQVN 113 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHH---HHHHHHHc
Confidence 4667777777777777777777777788888888888888888876642 22 2234443 45776663
No 203
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=75.66 E-value=15 Score=37.92 Aligned_cols=29 Identities=24% Similarity=0.211 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 260 TLQTEVSALSPRVAFLDHQRLILNVDNSALK 290 (363)
Q Consensus 260 ~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LK 290 (363)
.|+.||..|++++..|..+...| ||..||
T Consensus 36 aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~ 64 (420)
T PF07407_consen 36 ALRMENHSLKKENNDLKIEVERL--ENEMLR 64 (420)
T ss_pred hHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence 34444444444444444444444 344444
No 204
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=75.57 E-value=29 Score=34.50 Aligned_cols=73 Identities=18% Similarity=0.319 Sum_probs=47.7
Q ss_pred HHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 037696 232 RILANRQSAQ-RSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEAL 310 (363)
Q Consensus 232 R~LsNRESAq-RSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~L 310 (363)
.-|+|||..- .+|.||..-.+++ ..|+...- -..+|..|++++..++.|+-....+|..+..+ .+|+++.-.+
T Consensus 131 K~IR~~E~sl~p~R~~r~~l~d~I----~kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~-~lKEa~~~~f 204 (271)
T PF13805_consen 131 KSIRNREESLQPSRDRRRKLQDEI----AKLKYKDP-QSPKLVVLEQELVRAEAENLVAEAQLSNIKRQ-KLKEAYSLKF 204 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-T-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHhHHHHHHH----HHHHhcCC-CChHHHHHHHHHHHHHHHhhHHHHHHHHhhHH-HHHHHHHHHH
Confidence 3567887664 4555555433333 33433222 25678889999999999999999999998876 4677654333
No 205
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=75.49 E-value=1.6 Score=36.53 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
.||+.|...+..|..+|..|..++..|..+...+......|+..|..
T Consensus 25 ~fl~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l~~ 71 (131)
T PF05103_consen 25 DFLDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRALIQ 71 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCCT-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhh
Confidence 58999999999999999999999999988888888888888777643
No 206
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=75.40 E-value=46 Score=36.28 Aligned_cols=55 Identities=16% Similarity=0.263 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFK 303 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~K 303 (363)
+-+++|..++..|..+...+..++..+...+..+..|..+.+.....+++++.++
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~ 382 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLK 382 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555444444444444444444444444444444444444444443
No 207
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.30 E-value=95 Score=31.19 Aligned_cols=14 Identities=21% Similarity=0.629 Sum_probs=8.7
Q ss_pred CCCChhhhhhcccc
Q 037696 59 NQPHWVDEFLDFSS 72 (363)
Q Consensus 59 ~~psW~DefL~fs~ 72 (363)
..|-=|-+||+.+.
T Consensus 7 ~~~isL~dFL~~t~ 20 (312)
T smart00787 7 TEPISLQDFLNMTG 20 (312)
T ss_pred CCCccHHHHHHHcC
Confidence 45556777777643
No 208
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=75.28 E-value=50 Score=33.69 Aligned_cols=43 Identities=19% Similarity=0.078 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRI 293 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL 293 (363)
+..|..++..|+.+|..|..++..+..++..+..+..++...|
T Consensus 139 ~~~l~~~~~~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L 181 (342)
T PF06632_consen 139 NSRLQAENEHLQKENERLESEANKLLKQLEKFVNAKEEHEEDL 181 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555544444433
No 209
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=75.27 E-value=40 Score=37.73 Aligned_cols=66 Identities=21% Similarity=0.292 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 257 SVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 257 kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
++..|+..+..|+.+|.........|..+|..||.++.+-.....+-+.....|+.|++.+++.+.
T Consensus 588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~L~~E~e~~kk~~e 653 (786)
T PF05483_consen 588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAESKQSNVYEIKVNKLQEELENLKKKHE 653 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 334455555556666666555666666677777776666555555555555666666666666554
No 210
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=75.18 E-value=44 Score=41.23 Aligned_cols=64 Identities=27% Similarity=0.398 Sum_probs=50.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 234 LANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALA 297 (363)
Q Consensus 234 LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~ 297 (363)
..-.+.+++++.-=+..+..+|+++..|++|+.+|...+..+.+....++.|..++..+|..+.
T Consensus 1645 q~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE~e~~E~~e~i~~~~ 1708 (1930)
T KOG0161|consen 1645 QRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAELELEELAERVNELN 1708 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 3366778888888888888888888888888888888888888888777777777777777654
No 211
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=75.16 E-value=98 Score=31.28 Aligned_cols=42 Identities=24% Similarity=0.220 Sum_probs=20.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 234 LANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 234 LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
+.-|+--.....--.+|-.+||.++.+|++.|..|..+++.|
T Consensus 30 ~~~reEl~EFQegSrE~EaelesqL~q~etrnrdl~t~nqrl 71 (333)
T KOG1853|consen 30 LQMREELNEFQEGSREIEAELESQLDQLETRNRDLETRNQRL 71 (333)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333443333333344555566666666555555555444443
No 212
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=75.04 E-value=86 Score=33.12 Aligned_cols=66 Identities=20% Similarity=0.206 Sum_probs=55.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 037696 235 ANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK 300 (363)
Q Consensus 235 sNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~ 300 (363)
+++...++-=.++...|.+-..+...|+.+...|..++..+++++.....++..++++|..+...+
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l 103 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARL 103 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHH
Confidence 556777777777788888888888889999999999999999999999999999999999887754
No 213
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=74.86 E-value=80 Score=37.01 Aligned_cols=63 Identities=13% Similarity=0.187 Sum_probs=29.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 037696 234 LANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVA---FLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 234 LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela---~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
-+..+..+..+.+++..|.+|+.++..+..+...|...+. .|..++..|..++..|+..+..+
T Consensus 842 ~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~ 907 (1311)
T TIGR00606 842 VSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDA 907 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666666666666665555544444443333222 23333444444444444444333
No 214
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=74.73 E-value=43 Score=37.36 Aligned_cols=85 Identities=22% Similarity=0.286 Sum_probs=49.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHH
Q 037696 233 ILANRQSAQRSRVRKLQYISELERS-VTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKD---AHQE 308 (363)
Q Consensus 233 ~LsNRESAqRSR~RKkqyIeELE~k-V~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~Ke---A~~E 308 (363)
+|.-+..||.-+.|-++.+-++.+. +..-+...+.-.-..+.|+-|...|++|-.+||-++..|+.++.-.+ -..|
T Consensus 129 vLteqVeaQgEKIrDLE~cie~kr~kLnatEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq~e~E~K~R~se 208 (861)
T KOG1899|consen 129 VLTEQVEAQGEKIRDLETCIEEKRNKLNATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQNETEKKLRLSE 208 (861)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhhhchHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHH
Confidence 4566677887777766654443321 11111112211122367888889999999999999999986552222 2224
Q ss_pred HHHHHHHHH
Q 037696 309 ALKKEIERL 317 (363)
Q Consensus 309 ~LkkEIerL 317 (363)
.|..||.++
T Consensus 209 ~l~qevn~~ 217 (861)
T KOG1899|consen 209 NLMQEVNQS 217 (861)
T ss_pred HHHHHHHHH
Confidence 555555544
No 215
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=74.72 E-value=16 Score=27.85 Aligned_cols=31 Identities=29% Similarity=0.328 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 266 SALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 266 s~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
..+..++..|+.+...+..+|..|+.++..|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455555555556666777777777777
No 216
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=74.58 E-value=90 Score=33.16 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 238 QSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALK 290 (363)
Q Consensus 238 ESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LK 290 (363)
..|++-..+-++.+..|..+...|+.+...|..+-..|..+...|..+-++|.
T Consensus 126 ~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ 178 (499)
T COG4372 126 AAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQ 178 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666666666666666666666666666666666665555
No 217
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=74.16 E-value=60 Score=36.11 Aligned_cols=14 Identities=21% Similarity=0.638 Sum_probs=7.8
Q ss_pred cCCCCChhhhhhcc
Q 037696 57 HHNQPHWVDEFLDF 70 (363)
Q Consensus 57 ~~~~psW~DefL~f 70 (363)
|--.=.|++.|.+|
T Consensus 390 H~V~L~wl~~L~~f 403 (717)
T PF10168_consen 390 HSVTLPWLSALQEF 403 (717)
T ss_pred EEEEeccHHHHHHH
Confidence 33333477776665
No 218
>PRK02793 phi X174 lysis protein; Provisional
Probab=74.13 E-value=28 Score=27.83 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDH 277 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~q 277 (363)
.+||.++..|+...+.+...+..|.+
T Consensus 4 ~~~e~Ri~~LE~~lafQe~tIe~Ln~ 29 (72)
T PRK02793 4 SSLEARLAELESRLAFQEITIEELNV 29 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777777777766666655555543
No 219
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=73.79 E-value=36 Score=38.99 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.|.-+...|+.|...|...++.++.+...-+.|-..+..++..+++
T Consensus 110 iLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~ 155 (1265)
T KOG0976|consen 110 ILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLED 155 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3333333344444444444444444443333333344444444433
No 220
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.74 E-value=96 Score=36.35 Aligned_cols=65 Identities=18% Similarity=0.152 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 258 VTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 258 V~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
++.|+.|..+|..++..+.+++..+..+-..|+.++..|.....--+.....+..||...+...-
T Consensus 817 ~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~ 881 (1174)
T KOG0933|consen 817 YERLQLEHEELEKEISSLKQQLEQLEKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQR 881 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555544332222233344455544444333
No 221
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=73.70 E-value=74 Score=37.28 Aligned_cols=73 Identities=18% Similarity=0.165 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
+.+....|+.++..|..++..+..++..+..+...|..+-..+..++..+......+ .+.+..++..++..+.
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 951 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETS---NKKAQDKVNDIKEKVK 951 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 445556677777777777777777777766666666666666666665554432222 2445555555555444
No 222
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=73.32 E-value=52 Score=27.86 Aligned_cols=49 Identities=18% Similarity=0.281 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 037696 248 LQYISELERSVTTLQTEVSALSPRVAFL--DHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L--~qq~~~L~~EN~~LKqrL~~L 296 (363)
+..++.|+.++.......+.|..++..| ....+.|..+-.+++-++..+
T Consensus 34 ~~~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l 84 (106)
T PF10805_consen 34 REDIEKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKEL 84 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 4455555555555555555555555544 444444444444444444444
No 223
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=73.28 E-value=44 Score=29.64 Aligned_cols=40 Identities=25% Similarity=0.257 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSP-------RVAFLDHQRLILNVDNSALK 290 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~-------ela~L~qq~~~L~~EN~~LK 290 (363)
...|+.....|+.++..|.. .+..+......|...+..|+
T Consensus 29 ~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~ 75 (136)
T PF04871_consen 29 ESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLK 75 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444 33333444444444444444
No 224
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=73.16 E-value=27 Score=27.41 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037696 254 LERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
||.++..|+...+.+...+..|.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln 24 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELN 24 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666555555555544
No 225
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=73.08 E-value=19 Score=36.13 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALA 297 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~ 297 (363)
||=.||.+.+....|...|..+|..|+++...+...-+..|..|..|.
T Consensus 65 ~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~~~eglr 112 (389)
T PF06216_consen 65 YIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMREIIEGLR 112 (389)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444566666667777777777777766665555555555555555543
No 226
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=73.05 E-value=23 Score=34.82 Aligned_cols=59 Identities=24% Similarity=0.202 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 257 SVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 257 kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
-+.........+...+.. +..+..||+.||.++..+.+. ....+.|++|-++||.++..
T Consensus 50 v~~~p~~~v~~~~~~~~~----~~~~~~en~~Lk~~l~~~~~~----~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 50 VVAAPFEFVDGVLEFLKS----LKDLALENEELKKELAELEQL----LEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHhhHHHHHHhHHHHHHH----hHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCC
Confidence 333333334444444433 345678899999999888663 34557899999999998884
No 227
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=72.87 E-value=85 Score=29.55 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 037696 257 SVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNIK 327 (363)
Q Consensus 257 kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~~~ 327 (363)
+...|++|...|..++.+++........-..-++.++..+.......+.....|+.-|.+.|.....+-..
T Consensus 151 ~~~~l~ae~~~l~~~~~~le~el~s~~~rq~L~~~qrdl~~~~~~~l~~~l~~Lq~~ln~~R~~eae~~~~ 221 (240)
T PF12795_consen 151 QRWLLQAELAALEAQIEMLEQELLSNNNRQELLQLQRDLLKARIQRLQQQLQALQNLLNQKRRQEAEQAVE 221 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555544444444444444444444444444445555555555555555544443
No 228
>PLN02320 seryl-tRNA synthetase
Probab=72.70 E-value=66 Score=34.53 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Q 037696 223 TIIDPKRVKRILANRQSAQRSRVRK-----LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILN--VDNSALKQRIAA 295 (363)
Q Consensus 223 ~~~D~KR~RR~LsNRESAqRSR~RK-----kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~--~EN~~LKqrL~~ 295 (363)
+++|.|.+|. |.+.-+++-.|| ...|.+|..+...|..+...|+.+...+..+..... .+-.+|++++..
T Consensus 65 ~mlD~k~ir~---n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~ 141 (502)
T PLN02320 65 AAIDFKWIRD---NKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKN 141 (502)
T ss_pred cccCHHHHHh---CHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHH
Confidence 5678776653 555544443333 244445555555555555555555555544443200 112344444444
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 037696 296 LAQDKIFKDAHQEALKKEIER 316 (363)
Q Consensus 296 L~qe~~~KeA~~E~LkkEIer 316 (363)
|..+....++....+..|+..
T Consensus 142 lk~~i~~le~~~~~~~~~l~~ 162 (502)
T PLN02320 142 LKEGLVTLEEDLVKLTDELQL 162 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444333333333444455544
No 229
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=72.55 E-value=43 Score=29.56 Aligned_cols=46 Identities=28% Similarity=0.367 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.+|+.-..=+.|-++|..+|+.|+-++..++.=|..|..+|..|+.
T Consensus 15 r~ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~ 60 (134)
T PF08232_consen 15 RFERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEY 60 (134)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777788999999999999999999999999998888855
No 230
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=72.41 E-value=89 Score=33.71 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 261 LQTEVSALSPRVAFLDHQRLILNVDNSALKQRI 293 (363)
Q Consensus 261 Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL 293 (363)
++.+...+..++..+.++...+..+-..|+.++
T Consensus 433 l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 433 AQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333
No 231
>PRK04325 hypothetical protein; Provisional
Probab=72.39 E-value=29 Score=27.89 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDH 277 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~q 277 (363)
+..++.++..|+...+.+...|..|..
T Consensus 4 ~~~~e~Ri~~LE~klAfQE~tIe~LN~ 30 (74)
T PRK04325 4 VQEMEDRITELEIQLAFQEDLIDGLNA 30 (74)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777666665555555543
No 232
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=72.34 E-value=86 Score=29.37 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 269 SPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 269 s~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
..++..+.+++..|.-|+..|.+++..+..+
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555443
No 233
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=71.64 E-value=24 Score=35.19 Aligned_cols=62 Identities=18% Similarity=0.183 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 037696 254 LERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIE 315 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIe 315 (363)
.+.++...+.+...|..++..|..++.....|...|..++......+.--..+...|..|..
T Consensus 233 ~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~ 294 (344)
T PF12777_consen 233 AEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKE 294 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhh
Confidence 33333344444444444444444455555555555555555444333222334444444443
No 234
>PRK00106 hypothetical protein; Provisional
Probab=71.61 E-value=1.6e+02 Score=32.03 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037696 242 RSRVRKLQYISELERSVTTL 261 (363)
Q Consensus 242 RSR~RKkqyIeELE~kV~~L 261 (363)
..+..++++..+.+.++...
T Consensus 65 EAke~~ke~~lEaeeEi~~~ 84 (535)
T PRK00106 65 ESKALKKELLLEAKEEARKY 84 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333
No 235
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=71.24 E-value=12 Score=27.68 Aligned_cols=29 Identities=31% Similarity=0.381 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 270 PRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 270 ~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
..+..|......|..+|..|+++|..|..
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34455566666667777777777777654
No 236
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=71.22 E-value=21 Score=30.15 Aligned_cols=48 Identities=23% Similarity=0.326 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTE-VSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 249 qyIeELE~kV~~Lq~E-Ns~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+|-..=|.+|..|..- -.....+|..|..+...|..||..|+.+|...
T Consensus 27 ~YssKHE~KV~~LKksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e 75 (87)
T PF12709_consen 27 LYSSKHETKVKALKKSYEARWEKKVDELENENKALKRENEQLKKKLDTE 75 (87)
T ss_pred HHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566655521 12344555555555555555555555555543
No 237
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=71.05 E-value=1.1e+02 Score=35.92 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=59.2
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 037696 232 RILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALK 311 (363)
Q Consensus 232 R~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~Lk 311 (363)
++.++=.+-.+.+...+.-+++||......-.+..+|...+..+.-+...+..++-.|++++.++.....-.--+-.+|+
T Consensus 401 ~l~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~ 480 (1200)
T KOG0964|consen 401 KLKRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLR 480 (1200)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666667777777777777777777777777777777778888888888888877553322111223555
Q ss_pred HHHHHHHHHHhh
Q 037696 312 KEIERLRQVYHQ 323 (363)
Q Consensus 312 kEIerLRql~~q 323 (363)
..|..++.-+.+
T Consensus 481 ~~i~~~~~dl~~ 492 (1200)
T KOG0964|consen 481 SLIANLEEDLSR 492 (1200)
T ss_pred HHHHHHHHHHHH
Confidence 666666655554
No 238
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=71.05 E-value=1.1e+02 Score=34.53 Aligned_cols=101 Identities=22% Similarity=0.226 Sum_probs=77.8
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 037696 226 DPKRVKRILANRQSAQRSRVRKLQ----YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKI 301 (363)
Q Consensus 226 D~KR~RR~LsNRESAqRSR~RKkq----yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~ 301 (363)
+.-|+|++-=+-+|--+-+.||.+ -|+.+..-+..|+.+|..|+-++..=.+.+..|..+|.+-|.=.-.|..-+.
T Consensus 86 EaEKIk~WKv~vesd~~qKErkLqenrk~IEaqrKaIqELQf~NE~lSlKLee~i~en~dL~k~nnaTR~lCNlLKeT~~ 165 (786)
T PF05483_consen 86 EAEKIKKWKVQVESDLKQKERKLQENRKIIEAQRKAIQELQFENEKLSLKLEEEIQENKDLRKENNATRHLCNLLKETCQ 165 (786)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345888888888999999999975 5888999999999999999999999888888888888887776666655443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 037696 302 FKDAHQEALKKEIERLRQVYHQQNI 326 (363)
Q Consensus 302 ~KeA~~E~LkkEIerLRql~~qq~~ 326 (363)
-.....-....|.+..|++|...+.
T Consensus 166 rsaEK~~~yE~EREET~qly~~l~~ 190 (786)
T PF05483_consen 166 RSAEKMKKYEYEREETRQLYMDLNE 190 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333455677777888886554
No 239
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=71.04 E-value=38 Score=34.07 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 037696 307 QEALKKEIERLRQVYHQQNI 326 (363)
Q Consensus 307 ~E~LkkEIerLRql~~qq~~ 326 (363)
.+..++||++|+.-..+++.
T Consensus 287 Lketr~~Iq~l~k~~~q~sq 306 (330)
T KOG2991|consen 287 LKETRKEIQRLKKGLEQVSQ 306 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35556888888887776655
No 240
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=70.99 E-value=27 Score=37.24 Aligned_cols=21 Identities=10% Similarity=0.283 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPR 271 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~e 271 (363)
+.+-+.++.+|+.+...|+.+
T Consensus 71 LteqQ~kasELEKqLaaLrqE 91 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRRE 91 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544433
No 241
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=70.98 E-value=1.1e+02 Score=34.24 Aligned_cols=8 Identities=25% Similarity=0.368 Sum_probs=3.2
Q ss_pred hhhccccc
Q 037696 136 QLMSMFSD 143 (363)
Q Consensus 136 q~~smf~d 143 (363)
.+.-++++
T Consensus 413 sl~~l~~~ 420 (717)
T PF10168_consen 413 SLQELASE 420 (717)
T ss_pred hhhhhccc
Confidence 34334443
No 242
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=70.91 E-value=13 Score=39.48 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQ 291 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKq 291 (363)
++|..+|..|..+|..|..++..+.-.|..+..||+-|++
T Consensus 46 e~l~~rv~slsq~Nkvlk~elet~k~kcki~qeenr~l~~ 85 (552)
T KOG2129|consen 46 ESLGARVSSLSQRNKVLKGELETLKGKCKIMQEENRPLLL 85 (552)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHhhhhHHHHHHhcCchhhh
Confidence 6677778888888888888888888888888888887765
No 243
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=70.82 E-value=59 Score=32.29 Aligned_cols=68 Identities=18% Similarity=0.299 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHh
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDA---HQEALKKEIERLRQVYH 322 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA---~~E~LkkEIerLRql~~ 322 (363)
..+..++..++.....|......|..+......|-...+.||..|.. ++-| +.|.|+.|++.|=..|.
T Consensus 172 ~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~---vRPAfmdEyEklE~EL~~lY~~Y~ 242 (267)
T PF10234_consen 172 KAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQS---VRPAFMDEYEKLEEELQKLYEIYV 242 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cChHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444455555555555555555666666644 3333 45666677666555544
No 244
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=70.58 E-value=87 Score=35.39 Aligned_cols=62 Identities=21% Similarity=0.272 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKE 313 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkE 313 (363)
+.|+.....++..+..|...+...++++..|..++..|+.+|..-...+--+.+.++.+..|
T Consensus 311 ~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE 372 (775)
T PF10174_consen 311 ETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEE 372 (775)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444455555555555555555554444333333333333333
No 245
>PRK00295 hypothetical protein; Provisional
Probab=70.19 E-value=36 Score=26.91 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 254 LERSVTTLQTEVSALSPRVAFLDH 277 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L~q 277 (363)
||.++..|+...+.+...+..|..
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~ 26 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALND 26 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666655555555555543
No 246
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=70.17 E-value=1e+02 Score=29.48 Aligned_cols=36 Identities=22% Similarity=0.235 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 288 ALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 288 ~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
.+++.+....+.+...+.-+++|.+|-..||.+.--
T Consensus 105 vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~ 140 (195)
T PF10226_consen 105 VMRQEVAQYQQKLKELEDKQEELIRENLELKELCLY 140 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344555554444444455667888888888877653
No 247
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=70.16 E-value=1.1e+02 Score=29.68 Aligned_cols=25 Identities=12% Similarity=0.179 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 272 VAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+..|+.....+..|....+..+..+
T Consensus 62 In~lE~iIkqa~~er~~~~~~i~r~ 86 (230)
T PF10146_consen 62 INTLENIIKQAESERNKRQEKIQRL 86 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 248
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=69.95 E-value=20 Score=34.87 Aligned_cols=50 Identities=34% Similarity=0.427 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 238 QSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 238 ESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
..+||=|-|++ ..|||.++..+..++..|..++..| ..+|-.|=+++.-|
T Consensus 84 VtsQRDRFR~R--n~ELE~elr~~~~~~~~L~~Ev~~L-------~~DN~kLYEKiRyl 133 (248)
T PF08172_consen 84 VTSQRDRFRQR--NAELEEELRKQQQTISSLRREVESL-------RADNVKLYEKIRYL 133 (248)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 56666666654 4788877777777666666655554 45666665555544
No 249
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=69.93 E-value=77 Score=29.97 Aligned_cols=48 Identities=23% Similarity=0.300 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 272 VAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
+..+...+..+..||..|+..|..|.++...-++....|.+.-+.|+.
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677788888999999999988888777767776777666666553
No 250
>PLN02678 seryl-tRNA synthetase
Probab=69.77 E-value=61 Score=34.13 Aligned_cols=89 Identities=17% Similarity=0.201 Sum_probs=41.9
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHH
Q 037696 226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILN---VDNSALKQRIAALAQDKIF 302 (363)
Q Consensus 226 D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~---~EN~~LKqrL~~L~qe~~~ 302 (363)
++..+++.+++|-.. .+ -...|-+|..+...|..+...|..+...+..+...+. .+-.+|++++..|..+...
T Consensus 14 ~~~~v~~~l~~R~~~-~~---~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~ 89 (448)
T PLN02678 14 DPELIRESQRRRFAS-VE---LVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITE 89 (448)
T ss_pred CHHHHHHHHHhhCCC-HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Confidence 556667777777421 11 1344455555555555555555555555444443221 1112344444444444333
Q ss_pred HHHHHHHHHHHHHHHH
Q 037696 303 KDAHQEALKKEIERLR 318 (363)
Q Consensus 303 KeA~~E~LkkEIerLR 318 (363)
.+.....++.++..+-
T Consensus 90 le~~~~~~~~~l~~~~ 105 (448)
T PLN02678 90 KEAEVQEAKAALDAKL 105 (448)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455566665433
No 251
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=69.72 E-value=23 Score=38.99 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKI 301 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~ 301 (363)
.+|-.+|.+|..|+..|+.++....+....|+..+++|..+|..+.+++.
T Consensus 325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~ 374 (832)
T KOG2077|consen 325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAE 374 (832)
T ss_pred HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777766666666666666666666666655443
No 252
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=69.51 E-value=1.1e+02 Score=31.58 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 037696 288 ALKQRIAALAQDKIFKDAHQEALKKEIER 316 (363)
Q Consensus 288 ~LKqrL~~L~qe~~~KeA~~E~LkkEIer 316 (363)
+|+.++..|..+..-.++..+.+..++..
T Consensus 73 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 73 EIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433322222233444444443
No 253
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=69.36 E-value=90 Score=28.39 Aligned_cols=17 Identities=18% Similarity=0.214 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037696 260 TLQTEVSALSPRVAFLD 276 (363)
Q Consensus 260 ~Lq~ENs~Ls~ela~L~ 276 (363)
.++.+...+..++..+.
T Consensus 167 ~~~~ei~~~~~~~~~~~ 183 (236)
T PF09325_consen 167 QAENEIEEAERRVEQAK 183 (236)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444333333
No 254
>PRK00846 hypothetical protein; Provisional
Probab=69.31 E-value=39 Score=27.79 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVA 273 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela 273 (363)
+|.+||.++...+.-..+|...|.
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~ 37 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALA 37 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444433333
No 255
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=69.20 E-value=29 Score=28.14 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 037696 261 LQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK 300 (363)
Q Consensus 261 Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~ 300 (363)
...+...+..++..++++...|..||..|+.+++.|....
T Consensus 33 ~~~~~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~ 72 (97)
T PF04999_consen 33 SRHQSRQLFYELQQLEKEIDQLQEENERLRLEIATLSSPS 72 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHH
Confidence 4456677788888888888899999999999888887643
No 256
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=69.17 E-value=55 Score=28.98 Aligned_cols=53 Identities=9% Similarity=0.046 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKD 304 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~Ke 304 (363)
+.|-.....|+.........+..|+.++...+.....-...|..|+..+....
T Consensus 23 e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~ 75 (160)
T PF13094_consen 23 EQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALE 75 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555555555555555555555666666655544433
No 257
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=68.96 E-value=72 Score=33.02 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 257 SVTTLQTEVSALSPRVAFLDHQRLILNVDNS 287 (363)
Q Consensus 257 kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~ 287 (363)
++..|..+-.+|..++..|+.+...+..+-.
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~ 59 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIG 59 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555554444444433
No 258
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=68.81 E-value=1e+02 Score=28.90 Aligned_cols=87 Identities=23% Similarity=0.287 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-------HH
Q 037696 238 QSAQRSRVRKLQ-YISELERSVTTLQTEVSALSPRVAF--------------LDHQRLILNVDNSALKQRI-------AA 295 (363)
Q Consensus 238 ESAqRSR~RKkq-yIeELE~kV~~Lq~ENs~Ls~ela~--------------L~qq~~~L~~EN~~LKqrL-------~~ 295 (363)
.||+..+.+.++ -|.+|..++..|..||..|..--.. |-+-+.....|-+.|+.+| ..
T Consensus 7 lSar~~ki~~L~n~l~elq~~l~~l~~ENk~Lk~lq~Rq~kAL~k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~ 86 (194)
T PF15619_consen 7 LSARLHKIKELQNELAELQRKLQELRKENKTLKQLQKRQEKALQKYEDTEAELPQLLQRHNEEVRVLRERLRKSQEQERE 86 (194)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777666543 4566666666666666655432111 1111222333444444444 33
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037696 296 LAQDKIFKDAHQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 296 L~qe~~~KeA~~E~LkkEIerLRql~~qq 324 (363)
+.....-++++...+..++.+|+.+....
T Consensus 87 ~~~klk~~~~el~k~~~~l~~L~~L~~dk 115 (194)
T PF15619_consen 87 LERKLKDKDEELLKTKDELKHLKKLSEDK 115 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44444444555556667777777665533
No 259
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=68.74 E-value=1.2e+02 Score=29.60 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=39.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHH
Q 037696 230 VKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK--IFKDAHQ 307 (363)
Q Consensus 230 ~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~--~~KeA~~ 307 (363)
+|=.++-|+-+|---.+|.+|+..+...-..+..|..++..++... |..||..+.....+. -+|.++.
T Consensus 151 lK~vlk~R~~~Q~~le~k~e~l~k~~~dr~~~~~ev~~~e~kve~a----------~~~~k~e~~Rf~~~k~~D~k~~~~ 220 (243)
T cd07666 151 LMGVIKRRDQIQAELDSKVEALANKKADRDLLKEEIEKLEDKVECA----------NNALKADWERWKQNMQTDLRSAFT 220 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666776666666666666665443344444444444443333 555776666665443 2344444
Q ss_pred HHHHHHH
Q 037696 308 EALKKEI 314 (363)
Q Consensus 308 E~LkkEI 314 (363)
+-++.-|
T Consensus 221 ~yae~~i 227 (243)
T cd07666 221 DMAENNI 227 (243)
T ss_pred HHHHHHH
Confidence 4444333
No 260
>PF14645 Chibby: Chibby family
Probab=68.73 E-value=17 Score=31.59 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037696 254 LERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L 275 (363)
|..+.+.|+.||.-|.-++..|
T Consensus 76 l~~~n~~L~EENN~Lklk~elL 97 (116)
T PF14645_consen 76 LRKENQQLEEENNLLKLKIELL 97 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 261
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=68.58 E-value=25 Score=36.27 Aligned_cols=48 Identities=10% Similarity=0.016 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 037696 269 SPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIER 316 (363)
Q Consensus 269 s~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIer 316 (363)
.-.|..+..++..-..||.++-..+..+..-+-+..+..+.|+.+|-.
T Consensus 153 KD~LeE~eeqLaeS~Re~eek~kE~er~Kh~~s~Lq~~~~elKe~l~Q 200 (405)
T KOG2010|consen 153 KDVLEEQEEQLAESYRENEEKSKELERQKHMCSVLQHKMEELKEGLRQ 200 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333433334444444444444333333333344555555543
No 262
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=68.25 E-value=87 Score=27.78 Aligned_cols=87 Identities=14% Similarity=0.156 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccC
Q 037696 258 VTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKI-FKDAHQEALKKEIERLRQVYHQQNIKKMKNNNNSN 336 (363)
Q Consensus 258 V~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~-~KeA~~E~LkkEIerLRql~~qq~~~~~~~~~~s~ 336 (363)
...|...+..|..++..|..........-..+..++..|..... ++......+++|+.-|-.+++.+..| +...-...
T Consensus 29 ~~~l~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl~~E~~~~~q~EldDLL~ll~Dle~K-~~kyk~rL 107 (136)
T PF04871_consen 29 ESSLEQENKRLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKLKEEARKEAQSELDDLLVLLGDLEEK-RKKYKERL 107 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhHHHH-HHHHHHHH
Confidence 36777778888888777776555555555555555555544221 12112245789999999999977664 22222222
Q ss_pred CCCCCCCCC
Q 037696 337 NNATPPPQQ 345 (363)
Q Consensus 337 a~~~p~v~~ 345 (363)
-..|-+|+-
T Consensus 108 k~LG~eVSd 116 (136)
T PF04871_consen 108 KELGEEVSD 116 (136)
T ss_pred HHcCCCccC
Confidence 234555543
No 263
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=68.18 E-value=59 Score=32.70 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 256 RSVTTLQTEVSALSPRVAFLDHQRLILNVD 285 (363)
Q Consensus 256 ~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~E 285 (363)
.....|.-++..|..+|..+++.+..|..|
T Consensus 105 Nek~~l~yqvd~Lkd~lee~eE~~~~~~re 134 (302)
T PF09738_consen 105 NEKSALMYQVDLLKDKLEELEETLAQLQRE 134 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444333
No 264
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=68.05 E-value=1.2e+02 Score=29.46 Aligned_cols=13 Identities=46% Similarity=0.682 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q 037696 306 HQEALKKEIERLR 318 (363)
Q Consensus 306 ~~E~LkkEIerLR 318 (363)
..+.|++||+.|+
T Consensus 285 ~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 285 EAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC
Confidence 3456667777663
No 265
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=67.87 E-value=91 Score=31.91 Aligned_cols=74 Identities=18% Similarity=0.169 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQ----RLILNVDNSALKQRIAALAQDK----IFKDAHQEALKKEIERLRQV 320 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq----~~~L~~EN~~LKqrL~~L~qe~----~~KeA~~E~LkkEIerLRql 320 (363)
+-.++|+.+.++|+........+++.+.+- ...+..+...|+.=...|..-. .......+.|+++|.+.+..
T Consensus 4 eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~ 83 (330)
T PF07851_consen 4 EEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQ 83 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhh
Confidence 346788888888888887777766665432 2344444444444333333321 11234456777777776665
Q ss_pred Hh
Q 037696 321 YH 322 (363)
Q Consensus 321 ~~ 322 (363)
+.
T Consensus 84 l~ 85 (330)
T PF07851_consen 84 LF 85 (330)
T ss_pred HH
Confidence 55
No 266
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=67.86 E-value=1.5e+02 Score=30.47 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=25.1
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQ 262 (363)
Q Consensus 226 D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq 262 (363)
..++.|++|++|...-..=.||+..+.-=+..+.+|.
T Consensus 120 ~~~e~r~~lk~RI~rSEAFKRKllE~kYD~~mL~qLr 156 (323)
T PF08537_consen 120 SGREERRLLKDRILRSEAFKRKLLEKKYDKRMLEQLR 156 (323)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 4456678899999888888888665544444555554
No 267
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=67.85 E-value=49 Score=27.38 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=13.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696 290 KQRIAALAQDKIFKDAHQEALKKEIERL 317 (363)
Q Consensus 290 KqrL~~L~qe~~~KeA~~E~LkkEIerL 317 (363)
-.|+.....+....+.+|+.|..-|..|
T Consensus 36 ~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL 63 (80)
T PF10224_consen 36 SDRVEEVKEENEKLESENEYLQQYIGNL 63 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333566666666555
No 268
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=67.84 E-value=24 Score=29.96 Aligned_cols=27 Identities=11% Similarity=0.172 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
+.+++++.++..|+.+|..|..++..|
T Consensus 34 ~q~~~~~~e~~~l~~~n~~L~~eI~~L 60 (105)
T PRK00888 34 DQVAAQQQTNAKLKARNDQLFAEIDDL 60 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444444433
No 269
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=67.81 E-value=1.2e+02 Score=37.72 Aligned_cols=10 Identities=30% Similarity=0.600 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 037696 312 KEIERLRQVY 321 (363)
Q Consensus 312 kEIerLRql~ 321 (363)
.|+.+||..+
T Consensus 1160 ~e~~~l~~~l 1169 (1930)
T KOG0161|consen 1160 AEVQKLRRDL 1169 (1930)
T ss_pred HHHHHHHHHH
Confidence 3444444433
No 270
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=67.78 E-value=1.5e+02 Score=34.43 Aligned_cols=34 Identities=18% Similarity=0.095 Sum_probs=17.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 234 LANRQSAQRSRVRKLQYISELERSVTTLQTEVSA 267 (363)
Q Consensus 234 LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~ 267 (363)
.+.-++++.+...+.+...+|..+|..++.+-..
T Consensus 451 ~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~ 484 (980)
T KOG0980|consen 451 QKQLESAEQSIDDVEEENTNLNDQLEELQRAAGR 484 (980)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555544444
No 271
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=67.76 E-value=20 Score=34.61 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 037696 261 LQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV 320 (363)
Q Consensus 261 Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql 320 (363)
|+.|+..+.+++..|+.+......+-..+..+..+|..+ .|.+..|..||..-
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq-------~e~~~~EydrLlee 201 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVDALKKQ-------SEGLQDEYDRLLEE 201 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHcccHHHHHHHH
Confidence 566666666666666655555555555555555554332 24455555555443
No 272
>PF15294 Leu_zip: Leucine zipper
Probab=67.75 E-value=27 Score=34.88 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037696 273 AFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 273 a~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq 324 (363)
..|...+..|..||..||.||..++..+..---+...|...+..||-..+.+
T Consensus 128 ~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~ 179 (278)
T PF15294_consen 128 ELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQ 179 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3477888899999999999999999888654446678889999988855543
No 273
>PRK10698 phage shock protein PspA; Provisional
Probab=67.72 E-value=1.1e+02 Score=28.95 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKD 304 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~Ke 304 (363)
+..|+.++...+.....|...+..|+.++..+...-..|..|...-.....+.+
T Consensus 101 ~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~ 154 (222)
T PRK10698 101 IATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRR 154 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666677777777777777777777777777777766655544444
No 274
>PRK14127 cell division protein GpsB; Provisional
Probab=67.72 E-value=39 Score=29.36 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLIL 282 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L 282 (363)
.+|+++...+..|..|+..|..++..|..+...+
T Consensus 30 ~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~ 63 (109)
T PRK14127 30 KFLDDVIKDYEAFQKEIEELQQENARLKAQVDEL 63 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555555555555555554443333
No 275
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=67.68 E-value=49 Score=32.02 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
.+..||+.++.-..-..+|..+|..|+++...|..++.++.-+|..+
T Consensus 41 r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~ 87 (263)
T PRK10803 41 RVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQV 87 (263)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34455655554444344455555555444444444444444444444
No 276
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=67.65 E-value=60 Score=32.65 Aligned_cols=74 Identities=23% Similarity=0.291 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHH
Q 037696 248 LQYISELERSVTT-------LQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK-IFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 248 kqyIeELE~kV~~-------Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~-~~KeA~~E~LkkEIerLRq 319 (363)
+.-+.|+|.+... |-.|.+.|.-+|..|...+..|+.....|+..+.....++ ..|.. +..|+.|+..||.
T Consensus 83 k~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~-~d~L~~e~~~Lre 161 (302)
T PF09738_consen 83 KDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRA-HDSLREELDELRE 161 (302)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 4456666666554 4444445555666666666555555555555443322222 12222 2344444444444
Q ss_pred HHh
Q 037696 320 VYH 322 (363)
Q Consensus 320 l~~ 322 (363)
.+.
T Consensus 162 ~L~ 164 (302)
T PF09738_consen 162 QLK 164 (302)
T ss_pred HHH
Confidence 433
No 277
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=67.34 E-value=1.8e+02 Score=33.82 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~ 294 (363)
++++|.+....+.....|...++.|.+....|...+...-.++.
T Consensus 412 ~ee~e~~~l~~e~ry~klkek~t~l~~~h~~lL~K~~di~kQle 455 (980)
T KOG0980|consen 412 VEEAENKALAAENRYEKLKEKYTELRQEHADLLRKYDDIQKQLE 455 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555555544444444444433
No 278
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=67.29 E-value=31 Score=30.36 Aligned_cols=12 Identities=50% Similarity=0.601 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHH
Q 037696 246 RKLQYISELERS 257 (363)
Q Consensus 246 RKkqyIeELE~k 257 (363)
++++|+.+|+..
T Consensus 78 ~~~~~i~~~~~~ 89 (139)
T PF13935_consen 78 RAQQRIAELEQE 89 (139)
T ss_pred HHHHHHHHHHHH
Confidence 355555555544
No 279
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=67.27 E-value=97 Score=33.88 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696 282 LNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERL 317 (363)
Q Consensus 282 L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerL 317 (363)
+..+-+.|++++..+..+.+.|+.+...|..|+++|
T Consensus 445 ~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~ 480 (594)
T PF05667_consen 445 KLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKL 480 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344555666666677777777777777777776654
No 280
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=67.19 E-value=13 Score=32.84 Aligned_cols=30 Identities=30% Similarity=0.401 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 262 QTEVSALSPRVAFLDHQRLILNVDNSALKQ 291 (363)
Q Consensus 262 q~ENs~Ls~ela~L~qq~~~L~~EN~~LKq 291 (363)
+.|+..|+.++..|.+++..|+.||.-||.
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666777777777777888888776
No 281
>smart00340 HALZ homeobox associated leucin zipper.
Probab=67.15 E-value=12 Score=28.02 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 272 VAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.++|.+.+..|..||+.|+.+|++|..
T Consensus 7 Ce~LKrcce~LteeNrRL~ke~~eLra 33 (44)
T smart00340 7 CELLKRCCESLTEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356667777777777777766666543
No 282
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.91 E-value=36 Score=27.91 Aligned_cols=22 Identities=18% Similarity=0.286 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVA 273 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela 273 (363)
.+||.++..|+...+.-...+.
T Consensus 4 ~~lE~Ri~eLE~r~AfQE~tie 25 (72)
T COG2900 4 MELEARIIELEIRLAFQEQTIE 25 (72)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655444333333
No 283
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=66.74 E-value=97 Score=27.80 Aligned_cols=23 Identities=17% Similarity=0.198 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 037696 276 DHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 276 ~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.+....+..++..|+.+|.....
T Consensus 83 keKl~~~~~~~~~l~~~l~~~~~ 105 (177)
T PF13870_consen 83 KEKLHFLSEELERLKQELKDREE 105 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444433
No 284
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=66.50 E-value=79 Score=32.66 Aligned_cols=6 Identities=17% Similarity=0.180 Sum_probs=2.3
Q ss_pred hccccc
Q 037696 329 MKNNNN 334 (363)
Q Consensus 329 ~~~~~~ 334 (363)
++|..+
T Consensus 106 lPN~~~ 111 (418)
T TIGR00414 106 IPNIPH 111 (418)
T ss_pred CCCCCC
Confidence 344333
No 285
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=66.36 E-value=45 Score=37.01 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQ 291 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKq 291 (363)
..+-|||.+-+.|+.|.+++..+++.|.+....-..|-..||-
T Consensus 93 ~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~ 135 (907)
T KOG2264|consen 93 LELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKG 135 (907)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 3456677777777777777776666665544443333333333
No 286
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=66.31 E-value=97 Score=28.11 Aligned_cols=11 Identities=45% Similarity=0.652 Sum_probs=5.7
Q ss_pred HHHHHHHHHHH
Q 037696 309 ALKKEIERLRQ 319 (363)
Q Consensus 309 ~LkkEIerLRq 319 (363)
.|+.+|+.+|.
T Consensus 142 ~lr~~iE~~K~ 152 (177)
T PF07798_consen 142 NLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHHH
Confidence 45555555444
No 287
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=66.15 E-value=25 Score=30.11 Aligned_cols=33 Identities=15% Similarity=0.457 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 283 NVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 283 ~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
+.|-.-|+..|..|+. +++.|..|+.++|..|+
T Consensus 14 EEEa~LlRRkl~ele~-------eN~~l~~EL~kyk~~~g 46 (96)
T PF11365_consen 14 EEEAELLRRKLSELED-------ENKQLTEELNKYKSKYG 46 (96)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcC
Confidence 3455555666666644 56777777777777665
No 288
>PF14282 FlxA: FlxA-like protein
Probab=66.15 E-value=45 Score=28.25 Aligned_cols=21 Identities=29% Similarity=0.513 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSP 270 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ 270 (363)
.|..|+.++..|+.+...|..
T Consensus 20 ~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 20 QIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 345555555555555555544
No 289
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=66.01 E-value=1.6e+02 Score=35.07 Aligned_cols=60 Identities=27% Similarity=0.341 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 237 RQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALA 297 (363)
Q Consensus 237 RESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~ 297 (363)
|..+..-+.++.+ ++++..++..++.+...+..++..++++...|..+-..|+.++..|.
T Consensus 265 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~ 324 (1353)
T TIGR02680 265 RRRATRLRSAQTQ-YDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQ 324 (1353)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444333 24455555555555555555555555555555555555555544444
No 290
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=66.00 E-value=70 Score=28.93 Aligned_cols=10 Identities=30% Similarity=0.136 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 037696 278 QRLILNVDNS 287 (363)
Q Consensus 278 q~~~L~~EN~ 287 (363)
++..|..+|.
T Consensus 59 ~i~~lq~~~~ 68 (155)
T PF06810_consen 59 QIEELQAKNK 68 (155)
T ss_pred HHHHHHHHHH
Confidence 3333334444
No 291
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=65.85 E-value=1.2e+02 Score=28.62 Aligned_cols=6 Identities=50% Similarity=0.960 Sum_probs=2.3
Q ss_pred HHHhHH
Q 037696 233 ILANRQ 238 (363)
Q Consensus 233 ~LsNRE 238 (363)
.|-||.
T Consensus 82 ~lE~r~ 87 (237)
T PF00261_consen 82 VLENRE 87 (237)
T ss_dssp HHHHHH
T ss_pred HHHhHH
Confidence 333333
No 292
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=65.81 E-value=29 Score=25.63 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 268 LSPRVAFLDHQRLILNVDNSALKQ 291 (363)
Q Consensus 268 Ls~ela~L~qq~~~L~~EN~~LKq 291 (363)
|......|...+..|..+|..|+.
T Consensus 3 lE~Dy~~LK~~yd~Lk~~~~~L~~ 26 (45)
T PF02183_consen 3 LERDYDALKASYDSLKAEYDSLKK 26 (45)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555554
No 293
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=65.76 E-value=63 Score=30.95 Aligned_cols=27 Identities=26% Similarity=0.358 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQ 278 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq 278 (363)
..|+..+..++.+...+..++...+.+
T Consensus 97 ~~~~~~~~~~~~~i~~~~~~~~~a~~~ 123 (334)
T TIGR00998 97 KQLEITVQQLQAKVESLKIKLEQAREK 123 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555444444444444433
No 294
>PRK01156 chromosome segregation protein; Provisional
Probab=65.72 E-value=2e+02 Score=32.00 Aligned_cols=7 Identities=43% Similarity=0.985 Sum_probs=2.8
Q ss_pred HHHHHHh
Q 037696 316 RLRQVYH 322 (363)
Q Consensus 316 rLRql~~ 322 (363)
++|.++.
T Consensus 740 ~~r~~l~ 746 (895)
T PRK01156 740 RLREAFD 746 (895)
T ss_pred HHHHHhh
Confidence 3444333
No 295
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=65.44 E-value=39 Score=35.78 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
.+.|-.+...|++|-..+.++++..+-.+..|..||..|..+.-..
T Consensus 29 ~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~ 74 (459)
T KOG0288|consen 29 QSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVRE 74 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777788888888888888888888888888776543
No 296
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=65.34 E-value=72 Score=25.76 Aligned_cols=46 Identities=22% Similarity=0.242 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 254 LERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
||.--+.....-.......+.|+..+..-..+|..|+.++..|.+.
T Consensus 12 le~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~q 57 (70)
T PF04899_consen 12 LEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQ 57 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333333444445566666667777777777888888888888774
No 297
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=65.09 E-value=58 Score=29.53 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 268 LSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 268 Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+..+++.|.++....+.|...||.|.+.+
T Consensus 159 ~~~ei~~lk~el~~~~~~~~~LkkQ~~~l 187 (192)
T PF05529_consen 159 LSEEIEKLKKELEKKEKEIEALKKQSEGL 187 (192)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 298
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=65.01 E-value=2.1 Score=46.42 Aligned_cols=61 Identities=23% Similarity=0.318 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHh
Q 037696 238 QSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLI---LNVDNSALKQRIAALAQ 298 (363)
Q Consensus 238 ESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~---L~~EN~~LKqrL~~L~q 298 (363)
++.-..=++|.+-+.+|.++|+.|+..|..|..+...|+.+... +..+...||.+|..|..
T Consensus 314 E~~ve~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~ 377 (713)
T PF05622_consen 314 ENEVEKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQ 377 (713)
T ss_dssp ----------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44444445788999999999999999999888887777665543 44444455555555443
No 299
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=64.70 E-value=1.3e+02 Score=28.41 Aligned_cols=37 Identities=16% Similarity=0.145 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 245 VRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLI 281 (363)
Q Consensus 245 ~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~ 281 (363)
.=|++.|+.||.+|.+.+.-+.+....|...+.-...
T Consensus 63 ~GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~a 99 (188)
T PF05335_consen 63 AGKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQA 99 (188)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999888777776666655443333
No 300
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=64.68 E-value=74 Score=34.30 Aligned_cols=10 Identities=20% Similarity=0.448 Sum_probs=4.3
Q ss_pred cchhhhhhcc
Q 037696 131 RLDDEQLMSM 140 (363)
Q Consensus 131 r~dd~q~~sm 140 (363)
-||-+++-.+
T Consensus 152 fFDGE~I~~l 161 (650)
T TIGR03185 152 FFDGEKIEAL 161 (650)
T ss_pred cccHHHHHHH
Confidence 3444444333
No 301
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=64.60 E-value=49 Score=30.77 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIF 302 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~ 302 (363)
=|+=.|+++..|+.+|..|..++..|.+. ..+|..+-.++..+.....-
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~----Ar~Ne~~~~~~~~l~l~LL~ 89 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIEN----ARENEAIFQRLHRLVLALLA 89 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc
Confidence 46778889999999999999998888654 56888898888888776543
No 302
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=64.45 E-value=2.1e+02 Score=30.77 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 267 ALSPRVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 267 ~Ls~ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
.+..++..+..++..+..++.+|+.++..
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~l~~~le~ 92 (475)
T PRK10361 64 LLNNEVRSLQSINTSLEADLREVTTRMEA 92 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444443
No 303
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=64.41 E-value=1.5e+02 Score=32.40 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 037696 255 ERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLR 318 (363)
Q Consensus 255 E~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLR 318 (363)
..++..+..|+.+|...+.........|.+|-++|..+-+++.+ ..++.++||..||
T Consensus 246 qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~-------~~~EaeeELk~lr 302 (596)
T KOG4360|consen 246 QKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQ-------MLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhc
Confidence 33344444444444444444444445555555555555554433 2234456666655
No 304
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=64.25 E-value=8 Score=28.55 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 261 LQTEVSALSPRVAFLDHQRLILNVDNSALKQRI 293 (363)
Q Consensus 261 Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL 293 (363)
|-..|+.|..++..|+.....|..||-.||.++
T Consensus 12 laK~Ns~l~~ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 12 LAKRNSALSIKIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ------------------HHHHHHHHHHHHHHH
T ss_pred HHhHhHHHHhHHHHHHhHHHHHHHHHHHHHHHh
Confidence 334555566666666666666666777766654
No 305
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=64.20 E-value=83 Score=30.18 Aligned_cols=63 Identities=22% Similarity=0.189 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKE 313 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkE 313 (363)
|.=|..+++..+.|...=..+|-.|..++..+..+......++..|.....-|..+.|....|
T Consensus 12 IsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~E 74 (202)
T PF06818_consen 12 ISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENE 74 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHH
Confidence 455555555555555554445555555555555555555555554444333344333333333
No 306
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=64.12 E-value=21 Score=37.89 Aligned_cols=47 Identities=23% Similarity=0.262 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037696 266 SALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNI 326 (363)
Q Consensus 266 s~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~~ 326 (363)
..|...+..|+.++..|+..+++|+++|.++ ..+|-+||++|.+++.
T Consensus 409 ~el~e~le~Lq~Q~eeL~e~~n~l~qrI~ee--------------r~~v~~lkql~~~~q~ 455 (514)
T KOG4370|consen 409 EELQEILELLQRQNEELEEKVNHLNQRIAEE--------------RERVIELKQLVNLLQE 455 (514)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHhh
Confidence 3566677777888888888888888877764 5677788888877665
No 307
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=63.92 E-value=82 Score=29.80 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 037696 254 LERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFK 303 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~K 303 (363)
|-.-...+..||..|..++..|.+++..|...+..|..+-..|.++.-+.
T Consensus 154 l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~eq~~~ 203 (206)
T PF14988_consen 154 LDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQEQWYL 203 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445567789999999999999999999999999998888887765443
No 308
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=63.66 E-value=1.2e+02 Score=30.41 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 275 LDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 275 L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
+.+.+...+.+-++++.++.++...
T Consensus 212 ~~EeL~~~Eke~~e~~~~i~e~~~r 236 (269)
T PF05278_consen 212 LEEELKQKEKEVKEIKERITEMKGR 236 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445555555554443
No 309
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=63.64 E-value=37 Score=27.94 Aligned_cols=50 Identities=24% Similarity=0.321 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDH---QRLILNVDNSALKQRIAALAQDKI 301 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~q---q~~~L~~EN~~LKqrL~~L~qe~~ 301 (363)
-.|..++..|+.+-..++.+++.+.. ....|..+-..|+.+|..++.+..
T Consensus 39 r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~ 91 (108)
T PF02403_consen 39 RELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLK 91 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666655 356777777777777777766543
No 310
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=63.60 E-value=1.4e+02 Score=29.23 Aligned_cols=54 Identities=13% Similarity=0.103 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 238 QSAQRSRVRKLQYIS----ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQ 291 (363)
Q Consensus 238 ESAqRSR~RKkqyIe----ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKq 291 (363)
+|+--.-+||.-.++ .++.+++.|+.++..|..+++.+..++..-+..+.++++
T Consensus 170 eSsvAfGmRKALqae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~ 227 (259)
T KOG4001|consen 170 ESSVAFGMRKALQAENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEERE 227 (259)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 566677778766554 467778888888888888877776665555544444443
No 311
>PRK00736 hypothetical protein; Provisional
Probab=63.51 E-value=58 Score=25.73 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037696 254 LERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L 275 (363)
++.++..|+.....+...+..|
T Consensus 3 ~e~Ri~~LE~klafqe~tie~L 24 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEEL 24 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666555555444444
No 312
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=63.50 E-value=1.1e+02 Score=28.48 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=25.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 232 RILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALS 269 (363)
Q Consensus 232 R~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls 269 (363)
|++.-=..+-.-|.++..+++.++..+..++.....|.
T Consensus 98 r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~ 135 (216)
T cd07627 98 RSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLK 135 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333334555677888888888888888777777764
No 313
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=63.34 E-value=1.2e+02 Score=34.42 Aligned_cols=53 Identities=23% Similarity=0.201 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 271 RVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 271 ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
.+.....++..+..|-..+...|..|....-+++.....|.+.|+.|...+..
T Consensus 358 ~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~e 410 (775)
T PF10174_consen 358 QLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLRE 410 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555666777888888888888888888888888888888888777754
No 314
>PRK12705 hypothetical protein; Provisional
Probab=63.21 E-value=1.9e+02 Score=31.15 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 254 LERSVTTLQTEVSALSPRVAFLDHQRL 280 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~ 280 (363)
|+.+...|......|..+-..|..+..
T Consensus 93 l~~~~~~l~~~~~~l~~~~~~l~~~~~ 119 (508)
T PRK12705 93 LDARAEKLDNLENQLEEREKALSAREL 119 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333333333
No 315
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=63.20 E-value=1.2e+02 Score=32.65 Aligned_cols=17 Identities=35% Similarity=0.432 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037696 280 LILNVDNSALKQRIAAL 296 (363)
Q Consensus 280 ~~L~~EN~~LKqrL~~L 296 (363)
..|..||.+||..+.-|
T Consensus 307 qqleeentelRs~~arl 323 (502)
T KOG0982|consen 307 QQLEEENTELRSLIARL 323 (502)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555444443
No 316
>PHA03155 hypothetical protein; Provisional
Probab=63.18 E-value=76 Score=28.13 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAF 274 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~ 274 (363)
-+++|+.++..|+.||..|..+|..
T Consensus 9 tvEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 9 DVEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3789999999999999998888744
No 317
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=63.15 E-value=40 Score=32.07 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037696 254 LERSVTTLQTEVSALSPRV 272 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~el 272 (363)
|+.+|+.|+.+++.+.+++
T Consensus 91 l~ek~q~l~~t~s~veaEi 109 (201)
T KOG4603|consen 91 LTEKVQSLQQTCSYVEAEI 109 (201)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 318
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=62.96 E-value=1.4e+02 Score=28.25 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFL-------DHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L-------~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
++.+|.++..|+.+...+...+..| .++-..+...-..|..+|.......-.-+.....|..+|.+|-.
T Consensus 136 ~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~ 211 (237)
T PF00261_consen 136 AEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLED 211 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444333 33333444444444444444444433333333444444444433
No 319
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=62.95 E-value=71 Score=34.56 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 037696 255 ERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK 300 (363)
Q Consensus 255 E~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~ 300 (363)
+.++..+..|+..|..++...++....+..|...+++++..|..++
T Consensus 433 dSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL 478 (518)
T PF10212_consen 433 DSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDEL 478 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666666666666666666655544
No 320
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=62.94 E-value=1.2e+02 Score=27.70 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 259 TTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRI 293 (363)
Q Consensus 259 ~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL 293 (363)
..++.+...|..++..|+..+..|....+.+..++
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~ 119 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQS 119 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 34555555565555555544444443333333333
No 321
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=62.88 E-value=1.8e+02 Score=31.10 Aligned_cols=91 Identities=21% Similarity=0.191 Sum_probs=51.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHHH---
Q 037696 233 ILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILN-------VDNSALKQRIAALAQDKIF--- 302 (363)
Q Consensus 233 ~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~-------~EN~~LKqrL~~L~qe~~~--- 302 (363)
.-+|--+|+.--.|-.+.-.+|..++..|-.+-..|..+...|..+...|. .+-..|+.+-+.++++.+.
T Consensus 128 a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~~~la~ 207 (499)
T COG4372 128 ARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLAT 207 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666777766666666677777777777776666666666655554444 3333333333333333221
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 037696 303 KDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 303 KeA~~E~LkkEIerLRql~~q 323 (363)
+.--.+.+.+|+.++-+..++
T Consensus 208 r~~a~q~r~~ela~r~aa~Qq 228 (499)
T COG4372 208 RANAAQARTEELARRAAAAQQ 228 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 112335566777776666554
No 322
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=62.85 E-value=1.3e+02 Score=32.49 Aligned_cols=26 Identities=27% Similarity=0.240 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 240 AQRSRVRKLQYISELERSVTTLQTEVSA 267 (363)
Q Consensus 240 AqRSR~RKkqyIeELE~kV~~Lq~ENs~ 267 (363)
|+-.++ ++|++++-.++..|+.+.+.
T Consensus 347 sqlen~--k~~~e~~~~e~~~l~~~~~~ 372 (493)
T KOG0804|consen 347 SQLENQ--KQYYELLITEADSLKQESSD 372 (493)
T ss_pred HHHHhH--HHHHHHHHHHHHhhhhhhhH
Confidence 444443 34555555555554444433
No 323
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=62.68 E-value=1.2e+02 Score=34.05 Aligned_cols=15 Identities=13% Similarity=0.133 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVS 266 (363)
Q Consensus 252 eELE~kV~~Lq~ENs 266 (363)
++|+.+...++.+..
T Consensus 518 ~~L~~~~~~~e~~~~ 532 (771)
T TIGR01069 518 EKLSALEKELEQKNE 532 (771)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 324
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=62.68 E-value=1.3e+02 Score=35.20 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 037696 245 VRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK 300 (363)
Q Consensus 245 ~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~ 300 (363)
.-+...|++||.++..++.+...+...+......+..|..+-..|+.+|..-..++
T Consensus 444 ~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~~~~~el 499 (1041)
T KOG0243|consen 444 KEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQNKNKEL 499 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888877666677777777777776666554444
No 325
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=62.62 E-value=1.5e+02 Score=31.03 Aligned_cols=44 Identities=18% Similarity=0.221 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 037696 268 LSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLR 318 (363)
Q Consensus 268 Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLR 318 (363)
|..-+.++.+++..|..+...|..++..+.. ..+.|+.|+..|.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~l~~~l~~l~ 172 (525)
T TIGR02231 129 WFQAFDFNGSEIERLLTEDREAERRIRELEK-------QLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhc
Confidence 4444444444444444444444444444433 3345556655544
No 326
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.53 E-value=57 Score=26.76 Aligned_cols=26 Identities=23% Similarity=0.209 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAF 274 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~ 274 (363)
++|.+||.++..-+.-..+|...|..
T Consensus 8 ~Ri~eLE~r~AfQE~tieeLn~~laE 33 (72)
T COG2900 8 ARIIELEIRLAFQEQTIEELNDALAE 33 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666655555555554443
No 327
>PRK01156 chromosome segregation protein; Provisional
Probab=62.51 E-value=2.6e+02 Score=31.17 Aligned_cols=9 Identities=11% Similarity=0.246 Sum_probs=4.2
Q ss_pred Chhhhhhcc
Q 037696 62 HWVDEFLDF 70 (363)
Q Consensus 62 sW~DefL~f 70 (363)
|.+=|++.|
T Consensus 37 SsileAI~~ 45 (895)
T PRK01156 37 SSIVDAIRF 45 (895)
T ss_pred HHHHHHHHH
Confidence 444444444
No 328
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=62.44 E-value=2.2e+02 Score=33.89 Aligned_cols=44 Identities=5% Similarity=-0.022 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 236 NRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQR 279 (363)
Q Consensus 236 NRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~ 279 (363)
....|++....-++++++++..+...+.+...+..++..+..++
T Consensus 869 ~L~~A~~~~~~a~~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l 912 (1353)
T TIGR02680 869 ELRHAATRAAEQRARAARAESDAREAAEDAAEARAEAEEASLRL 912 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555556666666666655555555555555444443
No 329
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=62.39 E-value=1e+02 Score=26.64 Aligned_cols=70 Identities=19% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 254 LERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
++.++..|+.+...+...+..+..+...+..+..............+.-.-..+....++|..||.-+..
T Consensus 1 ~~~e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~ 70 (132)
T PF07926_consen 1 FESELSSLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQE 70 (132)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
No 330
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=62.20 E-value=1.5e+02 Score=28.38 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 246 RKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 246 RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+.-..+.+.|.+-..|+.++..+...+..-+.+...|..+-..-+++-+..
T Consensus 95 ~Qt~~LA~~eirR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~v 145 (192)
T PF11180_consen 95 QQTARLADVEIRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQV 145 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666666666665555555555554444444333
No 331
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=62.12 E-value=91 Score=25.87 Aligned_cols=66 Identities=11% Similarity=0.110 Sum_probs=58.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 230 VKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 230 ~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
+.++-..+......=..|+.-+..||.++..|..|...-..+.-.+.+....|..|++.|+..+..
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~K 70 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSK 70 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445666777777888888999999999999999999999999999999999999999999998865
No 332
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=62.01 E-value=1.2e+02 Score=36.11 Aligned_cols=10 Identities=50% Similarity=1.009 Sum_probs=7.3
Q ss_pred CCCCCCCCCC
Q 037696 3 QLPPKIPNMS 12 (363)
Q Consensus 3 qlppkip~~~ 12 (363)
|+||++|-|+
T Consensus 67 q~pp~~~~~t 76 (1293)
T KOG0996|consen 67 QPPPRPPHMT 76 (1293)
T ss_pred CCCCCChhhc
Confidence 7788888655
No 333
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=61.98 E-value=1.3e+02 Score=29.85 Aligned_cols=16 Identities=19% Similarity=0.044 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 037696 307 QEALKKEIERLRQVYH 322 (363)
Q Consensus 307 ~E~LkkEIerLRql~~ 322 (363)
.+.|+.|++-.+..|.
T Consensus 280 ~~~L~re~~~a~~~y~ 295 (362)
T TIGR01010 280 YQRLVLQNELAQQQLK 295 (362)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 334
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=61.89 E-value=1.2e+02 Score=27.38 Aligned_cols=62 Identities=8% Similarity=0.090 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 262 QTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 262 q~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
.-++..|+..++...+.......++..++.+|..|.....-.+..+..|..+.......+.+
T Consensus 18 ~~~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~ 79 (135)
T TIGR03495 18 SQRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQ 79 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666777777666665555555556666666665555554
No 335
>PF13166 AAA_13: AAA domain
Probab=61.88 E-value=2e+02 Score=30.82 Aligned_cols=50 Identities=16% Similarity=0.273 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK 300 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~ 300 (363)
+..+...+..+..+...+...+..+......+..+-..++.++..|....
T Consensus 405 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 454 (712)
T PF13166_consen 405 IAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQL 454 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555566666666666666666666666666666543
No 336
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=61.81 E-value=1e+02 Score=31.32 Aligned_cols=70 Identities=24% Similarity=0.384 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 037696 242 RSRVRKLQYISELERSV---TTLQTE----VSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEI 314 (363)
Q Consensus 242 RSR~RKkqyIeELE~kV---~~Lq~E----Ns~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEI 314 (363)
.+..|.+.|+++.|.-. ..|+.. -..|...+.....++..|.+||..|..+|..-.+. | |.|..||
T Consensus 21 q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~---k----erLEtEi 93 (305)
T PF14915_consen 21 QNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQN---K----ERLETEI 93 (305)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHH---H----HHHHHHH
Confidence 35566777888776422 223322 12355566667778888888888888887664442 2 4556666
Q ss_pred HHHH
Q 037696 315 ERLR 318 (363)
Q Consensus 315 erLR 318 (363)
+-.|
T Consensus 94 ES~r 97 (305)
T PF14915_consen 94 ESYR 97 (305)
T ss_pred HHHH
Confidence 6443
No 337
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=61.70 E-value=64 Score=34.42 Aligned_cols=75 Identities=13% Similarity=0.219 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHhHHHH----------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 225 IDPKRVKRILANRQSA----------QRSRV-RKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRI 293 (363)
Q Consensus 225 ~D~KR~RR~LsNRESA----------qRSR~-RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL 293 (363)
.+.+.+..|+.+-+.+ +--.. -..+|++.|...+.+.......+...+..+.++...+..+-..|.-+|
T Consensus 397 ~t~~~i~~ml~~V~~ii~~Lt~~~~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL 476 (507)
T PF05600_consen 397 QTAESIEEMLSAVEEIISQLTNPRTQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKL 476 (507)
T ss_pred cCHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4667777666554443 22222 235788999999998888889999999999999999999999999888
Q ss_pred HHHHhH
Q 037696 294 AALAQD 299 (363)
Q Consensus 294 ~~L~qe 299 (363)
..|...
T Consensus 477 ~~l~~~ 482 (507)
T PF05600_consen 477 DALVER 482 (507)
T ss_pred HHHHHH
Confidence 887653
No 338
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=61.68 E-value=2.4e+02 Score=31.90 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037696 262 QTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNI 326 (363)
Q Consensus 262 q~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~~ 326 (363)
+.|...|......|++.+......-..|..+|....+.++......+.|+.|+.+-+..|++--.
T Consensus 513 eaE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lqes~eea~~lR~EL~~QQ~~y~~alq 577 (739)
T PF07111_consen 513 EAERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQESTEEAAELRRELTQQQEVYERALQ 577 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555544455555667777777777666666677788888877777775444
No 339
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=61.40 E-value=27 Score=26.63 Aligned_cols=29 Identities=28% Similarity=0.348 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
..+.+.+|+.++..|+.+|..|..++..|
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445666666666666666666665555
No 340
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.39 E-value=1.2e+02 Score=26.81 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 037696 246 RKLQYISELERSVTTL 261 (363)
Q Consensus 246 RKkqyIeELE~kV~~L 261 (363)
++..++..++..+...
T Consensus 114 ~~~~~~~~~~~~l~~k 129 (218)
T cd07596 114 DALLTLQSLKKDLASK 129 (218)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 341
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=61.35 E-value=14 Score=30.76 Aligned_cols=30 Identities=20% Similarity=0.190 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
|+.+++.|..+++.++.+|..|..+|..++
T Consensus 78 ~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 78 KKKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 567788999999999998888888877654
No 342
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=61.34 E-value=1.6e+02 Score=32.00 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 037696 248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEAL 310 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~L 310 (363)
.+.++.++..|..|..-+..+..++.........|..+-..|+.+...++..+.+-.++.+.+
T Consensus 44 ~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ll~~f~~~f 106 (618)
T PF06419_consen 44 NRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKKLLDAFLERF 106 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 456778888888888888888888888888888888888888888777776666555544443
No 343
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=61.27 E-value=95 Score=34.09 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 263 TEVSALSPRVAFLDHQRLILNVDNSALKQRI 293 (363)
Q Consensus 263 ~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL 293 (363)
+.|.+|+.++..|+..+..|..+|-+|...|
T Consensus 160 sQN~eLK~QL~Elq~~Fv~ltne~~elt~~l 190 (617)
T PF15070_consen 160 SQNRELKEQLAELQDAFVKLTNENMELTSAL 190 (617)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHhhhHhhHHH
Confidence 4566666666666666666666664444433
No 344
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=61.21 E-value=56 Score=26.40 Aligned_cols=27 Identities=30% Similarity=0.167 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 037696 275 LDHQRLILNVDNSALKQRIAALAQDKI 301 (363)
Q Consensus 275 L~qq~~~L~~EN~~LKqrL~~L~qe~~ 301 (363)
...++..|..||=.||-+|--|+....
T Consensus 5 qe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 5 QEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 344555666667777766666655443
No 345
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=60.92 E-value=1.4e+02 Score=27.46 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037696 275 LDHQRLILNVDNSALKQRI 293 (363)
Q Consensus 275 L~qq~~~L~~EN~~LKqrL 293 (363)
|..+...|..+|+.|..++
T Consensus 94 L~~~v~~Le~e~r~L~~~~ 112 (158)
T PF09744_consen 94 LQSQVEQLEEENRQLELKL 112 (158)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333333333333333333
No 346
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=60.61 E-value=55 Score=40.20 Aligned_cols=58 Identities=22% Similarity=0.247 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 241 QRSRVRKLQYISELERSVTTLQ-------TEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 241 qRSR~RKkqyIeELE~kV~~Lq-------~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
|..+.+....+.+|..+|..|+ .++.+|..+++........|..||..-|+|.+.|..
T Consensus 1235 Ree~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~ 1299 (1822)
T KOG4674|consen 1235 REENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLE 1299 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566666666555544 444555555555555555666666665555555533
No 347
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=60.57 E-value=70 Score=35.00 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 037696 300 KIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 300 ~~~KeA~~E~LkkEIerLRql~~ 322 (363)
..++....+.|+.|.++|+..+.
T Consensus 561 ~~~k~~~l~~L~~En~~L~~~l~ 583 (722)
T PF05557_consen 561 EQIKKSTLEALQAENEDLLARLR 583 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778999999999998774
No 348
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=60.56 E-value=2e+02 Score=31.34 Aligned_cols=75 Identities=17% Similarity=0.234 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHh
Q 037696 248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD---KIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe---~~~KeA~~E~LkkEIerLRql~~ 322 (363)
..-|.+++.+|..|.........++..++..+.....+-..++..|+.++.+ .+++.+-+..|.+|++.|-..+.
T Consensus 22 i~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~~Lqvq~~N~k~L~~eL~~Ll~~l~ 99 (701)
T PF09763_consen 22 IHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNNGLQVQSANQKLLLNELENLLDTLS 99 (701)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHhcC
Confidence 5677888888999988888888888888888888888888888888877654 35677777888888877665544
No 349
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=60.36 E-value=72 Score=28.07 Aligned_cols=34 Identities=18% Similarity=0.175 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILN 283 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~ 283 (363)
++.++..++..|+........++..+.++...|.
T Consensus 52 ~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~ 85 (141)
T PF13874_consen 52 RLKEINDKLEELQKHDLETSARLEEARRRHQELS 85 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 4455555666665555555555555554444443
No 350
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=60.20 E-value=1.4e+02 Score=27.43 Aligned_cols=82 Identities=18% Similarity=0.202 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHH
Q 037696 240 AQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAH----QEALKKEIE 315 (363)
Q Consensus 240 AqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~----~E~LkkEIe 315 (363)
|-.-+..=...+..|+..+..+......|...+..|..++..+..+-..|+.+.........+.++. .......++
T Consensus 89 al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~~~~~~~~~~~~~~a~~~~e 168 (221)
T PF04012_consen 89 ALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQKKVNEALASFSVSSAMDSFE 168 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHH
Q ss_pred HHHHHH
Q 037696 316 RLRQVY 321 (363)
Q Consensus 316 rLRql~ 321 (363)
|++...
T Consensus 169 r~e~ki 174 (221)
T PF04012_consen 169 RMEEKI 174 (221)
T ss_pred HHHHHH
No 351
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=60.18 E-value=70 Score=35.78 Aligned_cols=80 Identities=16% Similarity=0.227 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 240 AQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 240 AqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
+.++..-=+..++..+.++.+++.....+..++..+...+..|..|+..|+..+..+...-.... -.+.|..|+.+.|.
T Consensus 564 ~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~~~s-~d~~L~EElk~yK~ 642 (698)
T KOG0978|consen 564 AKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEESGAS-ADEVLAEELKEYKE 642 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-ccHHHHHHHHHHHh
Confidence 33444444455555566666666666666666666666666666666666666655533211111 12455556655554
Q ss_pred H
Q 037696 320 V 320 (363)
Q Consensus 320 l 320 (363)
.
T Consensus 643 ~ 643 (698)
T KOG0978|consen 643 L 643 (698)
T ss_pred c
Confidence 3
No 352
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=59.81 E-value=91 Score=27.42 Aligned_cols=48 Identities=8% Similarity=0.088 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+.+..+...+..+......|.........++..+...+.+|-.++-.+
T Consensus 44 ~~~~~~~~~l~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v 91 (141)
T PF13874_consen 44 EEIAQHRERLKEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRV 91 (141)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554444444455555555555555555444
No 353
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=59.37 E-value=1.6e+02 Score=28.13 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
+..||..+..|..+...|..++.........+...-..+..+...|..
T Consensus 47 ~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~ 94 (264)
T PF06008_consen 47 LDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQ 94 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555554444444444444444433
No 354
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=59.18 E-value=16 Score=28.82 Aligned_cols=20 Identities=35% Similarity=0.416 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALS 269 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls 269 (363)
.|.+|+.++..|+.||.-|+
T Consensus 22 ~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 22 QIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555444
No 355
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=59.17 E-value=38 Score=26.40 Aligned_cols=16 Identities=6% Similarity=0.364 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 037696 283 NVDNSALKQRIAALAQ 298 (363)
Q Consensus 283 ~~EN~~LKqrL~~L~q 298 (363)
..||..|+..+..+.+
T Consensus 20 k~en~~i~~~ve~i~e 35 (55)
T PF05377_consen 20 KKENEEISESVEKIEE 35 (55)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566666666666544
No 356
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=59.11 E-value=77 Score=24.97 Aligned_cols=27 Identities=7% Similarity=0.106 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 261 LQTEVSALSPRVAFLDHQRLILNVDNS 287 (363)
Q Consensus 261 Lq~ENs~Ls~ela~L~qq~~~L~~EN~ 287 (363)
.+..|-.+..++.....++..|..+-.
T Consensus 23 vk~~n~~~e~kLqeaE~rn~eL~~ei~ 49 (61)
T PF08826_consen 23 VKSANLAFESKLQEAEKRNRELEQEIE 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333333333
No 357
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=59.11 E-value=2.6e+02 Score=30.56 Aligned_cols=73 Identities=18% Similarity=0.224 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHhh
Q 037696 251 ISELERSVTTLQTEVSA-LSPRVAFLDHQRLILNVDNSALKQRIAALAQDKI---FKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~-Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~---~KeA~~E~LkkEIerLRql~~q 323 (363)
+..|+.++..|+.+... +..-+..+..++..+...-..|+.++..++++.. -++.....|++|++..+.+|..
T Consensus 318 v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ 394 (754)
T TIGR01005 318 VVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQRDAAAKRQLYES 394 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443222 2222222333333333334444444444433321 1345556777888877777764
No 358
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=58.94 E-value=54 Score=33.54 Aligned_cols=42 Identities=24% Similarity=0.288 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 277 HQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 277 qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
+.+..|..||.+||+++..|+.+... .+.++.|..+||..+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~----~e~l~~En~~Lr~ll~ 98 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKS----YEEANQTPPLFSEILS 98 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhc
Confidence 56778888888888888888765433 2345566666776554
No 359
>PHA03162 hypothetical protein; Provisional
Probab=58.79 E-value=43 Score=30.38 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 246 RKLQYISELERSVTTLQTEVSALSPRVA 273 (363)
Q Consensus 246 RKkqyIeELE~kV~~Lq~ENs~Ls~ela 273 (363)
+|+.-+++|+.++..|+.||..|..+|.
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566789999999999999999999883
No 360
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=58.72 E-value=58 Score=25.42 Aligned_cols=39 Identities=13% Similarity=0.322 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
|.+||.++..+......++.+ +..|..+...|++.+..|
T Consensus 2 i~elEn~~~~~~~~i~tvk~e-------n~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 2 IDELENELPRIESSINTVKKE-------NEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 445555555444443333333 333344444445555443
No 361
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=58.72 E-value=89 Score=24.64 Aligned_cols=11 Identities=73% Similarity=0.975 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 037696 308 EALKKEIERLR 318 (363)
Q Consensus 308 E~LkkEIerLR 318 (363)
+.|++|++.||
T Consensus 49 ~~L~~e~ee~r 59 (61)
T PF08826_consen 49 ERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 34445554444
No 362
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=58.59 E-value=58 Score=35.31 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 037696 248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV 320 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql 320 (363)
.+++.+++.-+..|+.++..|..++......+..+..+|..++. ..+++.|.|++|+..|...
T Consensus 486 ee~i~~~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~~e~e~~----------a~~~E~eklE~el~~lnL~ 548 (622)
T COG5185 486 EEDIKNLKHDINELTQILEKLELELSEANSKFELSKEENERELV----------AQRIEIEKLEKELNDLNLL 548 (622)
T ss_pred HHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----------HHHHHHHHHHHHHHHhhhh
No 363
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=58.50 E-value=1.9e+02 Score=29.70 Aligned_cols=18 Identities=50% Similarity=0.615 Sum_probs=13.3
Q ss_pred ccccccccCCCCCccccCC
Q 037696 73 VRRGAHRRSISDSVAFLDP 91 (363)
Q Consensus 73 ~RRG~HRRS~SDS~afle~ 91 (363)
+|| -|+-|-.|++-||-+
T Consensus 5 ~~~-i~~~s~p~~~yfL~~ 22 (342)
T PF06632_consen 5 VRR-IHISSEPDSIYFLQV 22 (342)
T ss_dssp EEE-EEETTSCSSEEEEEE
T ss_pred eee-eecCCCCCceEEEEE
Confidence 344 688888899999853
No 364
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.38 E-value=1.8e+02 Score=29.53 Aligned_cols=40 Identities=23% Similarity=0.321 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037696 285 DNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 285 EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq 324 (363)
..++|-..|..|.+.+.....-.+.++.||..+++++-.+
T Consensus 155 qq~Els~~L~~l~~~~~~~s~~~~k~esei~~Ik~lvln~ 194 (300)
T KOG2629|consen 155 QQSELSRALASLKNTLVQLSRNIEKLESEINTIKQLVLNM 194 (300)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcc
Confidence 3346666666666555444556788999999999877643
No 365
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=58.36 E-value=1.6e+02 Score=27.53 Aligned_cols=54 Identities=19% Similarity=0.187 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIF 302 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~ 302 (363)
+.+..|+.++..++.....|..++..|++++..+...-..|+.+.........+
T Consensus 99 ~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~ 152 (219)
T TIGR02977 99 ELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDV 152 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556667777777777777777777777777777777777766555444333
No 366
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=57.96 E-value=33 Score=30.66 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 258 VTTLQTEVSALSPRVAFLDHQRLILNVDNSAL 289 (363)
Q Consensus 258 V~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~L 289 (363)
++.|+.|...=-.++..|.+++..+...|..|
T Consensus 96 ~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~L 127 (131)
T PF04859_consen 96 VKKLEAELRAKDSEIDRLREKLDELNRANKSL 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333333333333333333344333
No 367
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=57.63 E-value=1.6e+02 Score=28.13 Aligned_cols=15 Identities=40% Similarity=0.368 Sum_probs=9.5
Q ss_pred CCCCCHHHHHHHHHh
Q 037696 222 DTIIDPKRVKRILAN 236 (363)
Q Consensus 222 ~~~~D~KR~RR~LsN 236 (363)
+..-|+-|+||-|++
T Consensus 93 ~~dwEevrLkrELa~ 107 (195)
T PF12761_consen 93 GTDWEEVRLKRELAE 107 (195)
T ss_pred CCchHHHHHHHHHHH
Confidence 344577888885544
No 368
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=57.59 E-value=1e+02 Score=29.61 Aligned_cols=67 Identities=15% Similarity=0.221 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-----------HHHHHHHHHHHHHHHHHHHHHhhh
Q 037696 258 VTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK-----------IFKDAHQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 258 V~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~-----------~~KeA~~E~LkkEIerLRql~~qq 324 (363)
++......+....+|..|.+-+..|..||++|+.-.-.|-.+. +|-.--...+++||...-+.+.+.
T Consensus 43 m~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryta~vmr~eV~~Y~~KL~eL 120 (195)
T PF10226_consen 43 MKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYTASVMRQEVAQYQQKLKEL 120 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444555566666777777788888887555443321 222223456777777766666643
No 369
>PHA03161 hypothetical protein; Provisional
Probab=57.39 E-value=1.6e+02 Score=27.20 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=41.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 037696 235 ANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEI 314 (363)
Q Consensus 235 sNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEI 314 (363)
.-|.+-++.+..|+. .+++..|..|..+......+++.|..-...-...-..|..++.+|. +.|.-||
T Consensus 42 ~t~~~lr~~~~~~~~--~~i~~~v~~l~~~I~~k~kE~~~L~~fd~kkl~~~E~L~drv~eLk----------eel~~EL 109 (150)
T PHA03161 42 HTKKSLIKHENLKKQ--KSIEGMLQAVDLSIQEKKKELSLLKAFDRHKLSAAEDLQDKILELK----------EDIHFEI 109 (150)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHH----------HHHHHHH
Confidence 334444444444444 7788888888888888888888776543333333444444444432 3455566
Q ss_pred HHHH
Q 037696 315 ERLR 318 (363)
Q Consensus 315 erLR 318 (363)
++|.
T Consensus 110 e~l~ 113 (150)
T PHA03161 110 EALN 113 (150)
T ss_pred HHHh
Confidence 5543
No 370
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=57.35 E-value=2.6e+02 Score=31.05 Aligned_cols=85 Identities=14% Similarity=0.140 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696 238 QSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERL 317 (363)
Q Consensus 238 ESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerL 317 (363)
+.+.+-|..=.+-|+.|...+..|..+...+..++..-+..+.....+-..++.+-..|+.-.+--+.....|..-+.+|
T Consensus 75 e~~~~~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl 154 (632)
T PF14817_consen 75 ENEARRRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRL 154 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455567777777777777777777777777666666666666666665555443333333344455555444
Q ss_pred HHHHh
Q 037696 318 RQVYH 322 (363)
Q Consensus 318 Rql~~ 322 (363)
..-+.
T Consensus 155 ~~~~~ 159 (632)
T PF14817_consen 155 QGQVE 159 (632)
T ss_pred HHHHH
Confidence 44433
No 371
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=57.20 E-value=17 Score=32.24 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 248 LQYISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
..-+++|..++..|+.||..|..+|..-
T Consensus 2 ~~t~EeLaaeL~kLqmENk~LKkkl~~~ 29 (118)
T PF05812_consen 2 DMTMEELAAELQKLQMENKALKKKLRQS 29 (118)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3457888888888888888887777653
No 372
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=57.14 E-value=99 Score=30.89 Aligned_cols=66 Identities=11% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 037696 248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKE 313 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkE 313 (363)
+.-|+.+..++..|+.||..+..+...-...+..+..|...+..++..+.....--+.+.-+|..|
T Consensus 243 k~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~~~~~~~~~~~~k~~kLe~LcRaLQ~e 308 (309)
T PF09728_consen 243 KKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQKLEKELEKLKKKIEKLEKLCRALQAE 308 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 373
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=57.11 E-value=18 Score=32.06 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 272 VAFLDHQRLILNVDNSALKQRIAALA 297 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~~L~ 297 (363)
++.|..++..|.+||+.||.+|..-.
T Consensus 5 ~EeLaaeL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 5 MEELAAELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 45556666777899999999997654
No 374
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=57.09 E-value=88 Score=35.59 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 239 SAQRSRVRKLQYISELERSVTTLQTEVSA 267 (363)
Q Consensus 239 SAqRSR~RKkqyIeELE~kV~~Lq~ENs~ 267 (363)
+=||.=.+-.++.+|||+++.-|+.|..+
T Consensus 46 afQR~fv~evrRcdemeRklrfl~~ei~k 74 (829)
T KOG2189|consen 46 AFQRKFVNEVRRCDEMERKLRFLESEIKK 74 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555667788888888888877766
No 375
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=56.70 E-value=2.9e+02 Score=32.37 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
++...++.++..|+.+...+..++..+
T Consensus 678 ~~~~~~~~~l~~l~~~l~~~~~e~~~~ 704 (1201)
T PF12128_consen 678 ERKEQIEEQLNELEEELKQLKQELEEL 704 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 376
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=56.60 E-value=71 Score=26.07 Aligned_cols=52 Identities=21% Similarity=0.235 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHH---HHHHHHHHHHHHHHHHh
Q 037696 271 RVAFLDHQRLILNVDNSALKQRIAALAQDKIF----KDA---HQEALKKEIERLRQVYH 322 (363)
Q Consensus 271 ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~----KeA---~~E~LkkEIerLRql~~ 322 (363)
-+..|+.+...++.|+-.||++|..+.+++-. .|| ..-.|.+|...+|..+.
T Consensus 9 lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~ 67 (70)
T PF08606_consen 9 LLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALA 67 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHH
Confidence 45667788888888999999988887776422 111 23456677777776655
No 377
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=56.50 E-value=54 Score=30.48 Aligned_cols=42 Identities=19% Similarity=0.229 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 037696 270 PRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALK 311 (363)
Q Consensus 270 ~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~Lk 311 (363)
.-+...++|...|..+|+.|+.++..|.....--++..+.+.
T Consensus 40 ~avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~ 81 (225)
T PF04340_consen 40 GAVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQRLH 81 (225)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888888888888776555444444433
No 378
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=56.48 E-value=38 Score=35.83 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 037696 223 TIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIF 302 (363)
Q Consensus 223 ~~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~ 302 (363)
...++...+++|-.=-. +.+|..++..+..+...+..++..+..+...+..+...|+.+|.+|..- .+
T Consensus 139 ~l~~~~~~~~lLD~~~~-----------~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~-~l 206 (563)
T TIGR00634 139 LLFRPDEQRQLLDTFAG-----------ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEA-DL 206 (563)
T ss_pred HhcCHHHHHHHHHHhcC-----------chHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhC-Cc
Confidence 34567777666642111 1123333444444444444444444444444445555555555555432 22
Q ss_pred HHHHHHHHHHHHHHHH
Q 037696 303 KDAHQEALKKEIERLR 318 (363)
Q Consensus 303 KeA~~E~LkkEIerLR 318 (363)
+..+-|.|..|+.+|.
T Consensus 207 ~~~E~e~L~~e~~~L~ 222 (563)
T TIGR00634 207 QPGEDEALEAEQQRLS 222 (563)
T ss_pred CCCcHHHHHHHHHHHh
Confidence 3444445555554443
No 379
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.92 E-value=1.8e+02 Score=32.37 Aligned_cols=81 Identities=15% Similarity=0.100 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHH
Q 037696 245 VRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA-----------ALAQDKIFKDAHQEALKKE 313 (363)
Q Consensus 245 ~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~-----------~L~qe~~~KeA~~E~LkkE 313 (363)
.+..+.|.+++.+.+.++..-..|..++....+....|+..-+.|+++-. .+.++++.--.+...|..-
T Consensus 598 ~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~AErdFk~Elq~~~~~~~~L~~~ 677 (741)
T KOG4460|consen 598 KKQLQDLSYCREERKSLREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSDAERDFKKELQLIPDQLRHLGNA 677 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhHHHHHHHHHH
Confidence 33345566777777777766667777777666666666665555555432 1122222222233455555
Q ss_pred HHHHHHHHhhhh
Q 037696 314 IERLRQVYHQQN 325 (363)
Q Consensus 314 IerLRql~~qq~ 325 (363)
|+.+|+.+..|.
T Consensus 678 iET~~~~~~KQ~ 689 (741)
T KOG4460|consen 678 IETVTMKKDKQQ 689 (741)
T ss_pred HHHHHHHHHHHH
Confidence 566665555433
No 380
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=55.86 E-value=1.1e+02 Score=33.10 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHHHHHh
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFL---D----HQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L---~----qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.++.||.++..|+.+..+|..++..- . .....|..|-.+++.+|..+..
T Consensus 564 ~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (638)
T PRK10636 564 EIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEM 619 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888887777532 1 1345555555566665555544
No 381
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=55.82 E-value=73 Score=30.02 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 268 LSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 268 Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
...++..|+++...+...|-+|..-+..|++
T Consensus 173 ~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ 203 (221)
T PF05700_consen 173 AGEELRYLEQRWKELVSKNLEIEVACEELEQ 203 (221)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666676666666666666654
No 382
>PRK11281 hypothetical protein; Provisional
Probab=55.75 E-value=1.1e+02 Score=35.87 Aligned_cols=62 Identities=15% Similarity=0.037 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 258 VTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 258 V~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
...|++|...|..++.++++....-..-..-++.|...+..+....+.+.+.|+..|..-|.
T Consensus 194 ~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~kr~ 255 (1113)
T PRK11281 194 RVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSKRL 255 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555554444333333334444444433333333344444444444333
No 383
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=55.49 E-value=85 Score=32.08 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 276 DHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 276 ~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
.++...|...-..|-+++++|..+-.+-+| ..+.+|++.|+.
T Consensus 121 ~~~v~~l~e~I~~~l~~~E~LG~eG~Veea--q~~~~e~E~lk~ 162 (319)
T KOG0796|consen 121 AEKVHELEEKIGKLLEKAEELGEEGNVEEA--QKAMKEVEELKA 162 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCHHHH--HHHHHHHHHHHH
Confidence 344555555666666777777776666666 467788888885
No 384
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=55.44 E-value=40 Score=27.70 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 037696 278 QRLILNVDNSALKQRI 293 (363)
Q Consensus 278 q~~~L~~EN~~LKqrL 293 (363)
+-..|..+|..|+.++
T Consensus 83 ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 83 KERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333344444444443
No 385
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=55.39 E-value=1.4e+02 Score=30.69 Aligned_cols=62 Identities=19% Similarity=0.183 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 037696 266 SALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNIK 327 (363)
Q Consensus 266 s~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~~~ 327 (363)
..|-.+++-|.+++..+..+-.+|+.+-..+....--+-+...+...|++.+++-...++.+
T Consensus 269 K~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~ 330 (384)
T KOG0972|consen 269 KSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAK 330 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34555666666666666666666666665554444444445555667777777766555444
No 386
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=55.06 E-value=2.7e+02 Score=31.46 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHh
Q 037696 309 ALKKEIERLRQVYH 322 (363)
Q Consensus 309 ~LkkEIerLRql~~ 322 (363)
.|.+|+.+|+..+-
T Consensus 605 rleEE~e~L~~kle 618 (698)
T KOG0978|consen 605 RLEEELERLKRKLE 618 (698)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555544
No 387
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=54.97 E-value=2.1e+02 Score=30.84 Aligned_cols=7 Identities=29% Similarity=0.705 Sum_probs=4.9
Q ss_pred hhhhhcc
Q 037696 64 VDEFLDF 70 (363)
Q Consensus 64 ~DefL~f 70 (363)
+.|||.|
T Consensus 88 ~~Dll~F 94 (493)
T KOG0804|consen 88 SHDLLRF 94 (493)
T ss_pred HHHHHHH
Confidence 5677777
No 388
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=54.91 E-value=1e+02 Score=24.21 Aligned_cols=79 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 245 VRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILN-----VDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 245 ~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~-----~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
.+...-+.+....+..+......|......+........ .+-..+..-+..|...........+.++.+++.+|.
T Consensus 1 d~a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~ 80 (123)
T PF02050_consen 1 DQAEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQARE 80 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhh
Q 037696 320 VYHQ 323 (363)
Q Consensus 320 l~~q 323 (363)
.+..
T Consensus 81 ~l~~ 84 (123)
T PF02050_consen 81 ELQE 84 (123)
T ss_dssp HHHH
T ss_pred HHHH
No 389
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=54.78 E-value=1.5e+02 Score=31.71 Aligned_cols=39 Identities=21% Similarity=0.249 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHh
Q 037696 284 VDNSALKQRIAALAQDKIFKDAH----QEALKKEIERLRQVYH 322 (363)
Q Consensus 284 ~EN~~LKqrL~~L~qe~~~KeA~----~E~LkkEIerLRql~~ 322 (363)
.|-..++..|..|..++-.|..+ ..+|..|.+.||++-.
T Consensus 421 eelqsvqRELeVLSEQYSQKCLEnahLaqalEaerqaLRqCQr 463 (593)
T KOG4807|consen 421 EELQSVQRELEVLSEQYSQKCLENAHLAQALEAERQALRQCQR 463 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666555445443 3455566666776543
No 390
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=54.54 E-value=2.1e+02 Score=27.63 Aligned_cols=98 Identities=15% Similarity=0.204 Sum_probs=56.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHHH
Q 037696 229 RVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILN-------VDNSALKQRIAALAQDKI 301 (363)
Q Consensus 229 R~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~-------~EN~~LKqrL~~L~qe~~ 301 (363)
|++.+-.-=..|+..=.+....+..|+.+...++.+-..|..+...+.+....|. .|...|.+++..+.....
T Consensus 13 rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~ 92 (246)
T PF00769_consen 13 RLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIA 92 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3343333334455555666677778888888777777766666555555554444 455666667777666554
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh
Q 037696 302 FKDAHQEALKKEIERLRQVYHQQNI 326 (363)
Q Consensus 302 ~KeA~~E~LkkEIerLRql~~qq~~ 326 (363)
......+.-..|..+|+.-+.....
T Consensus 93 ~l~ee~~~ke~Ea~~lq~el~~ar~ 117 (246)
T PF00769_consen 93 RLEEESERKEEEAEELQEELEEARE 117 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444456667788888877665433
No 391
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=54.53 E-value=1.7e+02 Score=31.49 Aligned_cols=70 Identities=16% Similarity=0.196 Sum_probs=45.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 037696 231 KRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK 300 (363)
Q Consensus 231 RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~ 300 (363)
+++.+.--.-..-=.|+.+.-+|||.=..+|+.-+..+..-|...+-+...|..--..|..+|.-|.+++
T Consensus 142 q~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qL 211 (558)
T PF15358_consen 142 QTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQL 211 (558)
T ss_pred HHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHh
Confidence 3444444444445566666777787777777776667777777777666666655556666777766543
No 392
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=54.53 E-value=1.7e+02 Score=29.86 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 276 DHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVY 321 (363)
Q Consensus 276 ~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~ 321 (363)
..++..-..|-..+++||+.|..-.-.-..+.|..++|++.|=+.|
T Consensus 139 ~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y 184 (338)
T KOG3647|consen 139 GSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRY 184 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555566666654421112234566666666655544
No 393
>PF07558 Shugoshin_N: Shugoshin N-terminal coiled-coil region; InterPro: IPR011516 This entry represents the N-terminal domain of Shugoshin (Sgo1) kinetochore-attachment proteins. Shugoshin has a conserved coiled-coil N-terminal domain and a highly conserved C-terminal basic region (IPR011515 from INTERPRO). Shugoshin is a crucial target of Bub1 kinase that plays a central role in chromosome cohesion during mitosis and meiosis divisions by preventing premature dissociation of cohesin complex from centromeres after prophase, when most of cohesin complex dissociates from chromosomes arms [, ]. Shugoshin is thought to act by protecting Rec8 and Rad21 at the centromeres from separase degradation during anaphase I (during meiosis) so that sister chromatids remain tethered []. Shugoshin also acts as a spindle checkpoint component required for sensing tension between sister chromatids during mitosis, its degradation when they separate preventing cell cycle arrest and chromosome loss in anaphase, a time when sister chromatids are no longer under tension. Human shugoshin is diffusible and mediates kinetochore-driven formation of kinetochore-microtubules during bipolar spindle assembly []. Further, the primary role of shugoshin is to ensure bipolar attachment of kinetochores, and its role in protecting cohesion has co-developed to facilitate this process [].; GO: 0045132 meiotic chromosome segregation, 0000775 chromosome, centromeric region, 0005634 nucleus; PDB: 3FGA_D.
Probab=54.47 E-value=13 Score=27.48 Aligned_cols=42 Identities=33% Similarity=0.317 Sum_probs=10.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 230 VKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRV 272 (363)
Q Consensus 230 ~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~el 272 (363)
.++...|++=|+..-.... .|.+||.++..|..||-.|+.++
T Consensus 3 ~k~~~qn~~laK~Ns~l~~-ki~~le~~~s~L~~en~~lR~~~ 44 (46)
T PF07558_consen 3 EKYSRQNRELAKRNSALSI-KIQELENEVSKLLNENVNLRELV 44 (46)
T ss_dssp ----------------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhHhHHHHh-HHHHHHhHHHHHHHHHHHHHHHh
Confidence 3455566666655544433 46777777777777777776654
No 394
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=54.35 E-value=3.1e+02 Score=32.18 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRI 293 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL 293 (363)
.+++|..++....+...+..++.....++.....+...|+.+.
T Consensus 623 ~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 665 (1201)
T PF12128_consen 623 QEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNER 665 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4556655555555555555554444444443333333333333
No 395
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=54.26 E-value=3.2e+02 Score=31.90 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 225 IDPKRVKRILANRQSAQRSRVRKLQ----YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 225 ~D~KR~RR~LsNRESAqRSR~RKkq----yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.+-++++|-+.-=.-|-.--.||.+ .+.+||.+-..+......|......+++....|..+-.++.+||..|..
T Consensus 323 ~enmkltrqkadirc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelKn 400 (1265)
T KOG0976|consen 323 LENMKLTRQKADIRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELKN 400 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666644444444444455543 3457777777777777777777777777777777777777777776654
No 396
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=54.19 E-value=2.1e+02 Score=30.58 Aligned_cols=20 Identities=5% Similarity=0.061 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037696 256 RSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 256 ~kV~~Lq~ENs~Ls~ela~L 275 (363)
..+..++..|..|..++..|
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l 336 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRV 336 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 397
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=53.89 E-value=2.8e+02 Score=28.93 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 260 TLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 260 ~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
.++.-...+...++.-......|..+|..|.+++..|..++..++-+.+.+-..++ |-.-|++
T Consensus 113 ~fqvtL~diqktla~~~~~n~klre~NieL~eKlkeL~eQy~~re~hidk~~e~ke-l~~ql~~ 175 (391)
T KOG1850|consen 113 QFQVTLKDIQKTLAEGRSKNDKLREDNIELSEKLKELGEQYEEREKHIDKQIQKKE-LWEQLGK 175 (391)
T ss_pred HHHhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhH
Confidence 34444444555555566677788889999999999998888888877777776666 5555554
No 398
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=53.56 E-value=1.5e+02 Score=32.30 Aligned_cols=37 Identities=11% Similarity=0.278 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 037696 282 LNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLR 318 (363)
Q Consensus 282 L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLR 318 (363)
|...-+..+.||..|..+..-.-.....-.+||+.||
T Consensus 478 L~TTr~NYE~QLs~MSEHLasmNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 478 LETTRRNYEEQLSMMSEHLASMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455666676666655333333344456777776
No 399
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=53.49 E-value=2.1e+02 Score=32.66 Aligned_cols=42 Identities=21% Similarity=0.351 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 278 QRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 278 q~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
....|..|-..+|++|..+..+..--.-.+|.|+.|+..|+.
T Consensus 217 ~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~Lr~e~~qL~~ 258 (916)
T KOG0249|consen 217 DKNRLEQELESVKKQLEEMRHDKDKLRTDIEDLRGELDQLRR 258 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 445566677777777777766543333455777777777774
No 400
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=53.48 E-value=2.6e+02 Score=28.53 Aligned_cols=61 Identities=15% Similarity=0.143 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 238 QSAQRSRVRKLQYISELERSVTTLQTEVSALS---------------------PRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 238 ESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls---------------------~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+..|.-|..=|..++.|..+...|+....++. .-+....+++..|..|...|+++|.++
T Consensus 19 e~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~ 98 (319)
T PF09789_consen 19 EKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEA 98 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555556666666555555444333 334444455555555555555555444
Q ss_pred Hh
Q 037696 297 AQ 298 (363)
Q Consensus 297 ~q 298 (363)
.+
T Consensus 99 qG 100 (319)
T PF09789_consen 99 QG 100 (319)
T ss_pred hc
Confidence 33
No 401
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=53.41 E-value=2.7e+02 Score=28.60 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 037696 304 DAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 304 eA~~E~LkkEIerLRql~~ 322 (363)
+.....|++|++..+..|.
T Consensus 354 ~~el~~L~Re~~~~~~~Y~ 372 (498)
T TIGR03007 354 EAELTQLNRDYEVNKSNYE 372 (498)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444556666666665554
No 402
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=53.09 E-value=1e+02 Score=29.80 Aligned_cols=34 Identities=26% Similarity=0.306 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVD 285 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~E 285 (363)
++|+..-+.|..+.+.|..+-+.|.+....|..|
T Consensus 41 ~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~e 74 (228)
T PRK06800 41 EELLAQQKSLHKELNQLRQEQQKLERERQQLLAD 74 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333333333
No 403
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=52.97 E-value=2.7e+02 Score=33.49 Aligned_cols=7 Identities=14% Similarity=0.083 Sum_probs=3.7
Q ss_pred ccccccC
Q 037696 139 SMFSDDI 145 (363)
Q Consensus 139 smf~d~~ 145 (363)
.||..+.
T Consensus 339 pFF~g~~ 345 (1317)
T KOG0612|consen 339 PFFEGID 345 (1317)
T ss_pred ccccCCC
Confidence 4565553
No 404
>PRK14160 heat shock protein GrpE; Provisional
Probab=52.84 E-value=2.2e+02 Score=27.39 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
-+..|+.++..|+.++..|..++..+..++..+.++...+|.|...-
T Consensus 55 ~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE 101 (211)
T PRK14160 55 KIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYDNYRKRTAKE 101 (211)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777777777777777778777777777643
No 405
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=52.58 E-value=1.2e+02 Score=24.30 Aligned_cols=75 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 249 QYISELERSVTTLQ--TEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL---AQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 249 qyIeELE~kV~~Lq--~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L---~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
..+..|+..+..|- .++.+|+.++..+.+.+..|..+-..+-.+|..+ .......-...+.|..+...+-.-|+.
T Consensus 10 ~~v~~l~k~~~~lGt~~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~~~~~~~~~~~~k~~~~KL~~df~~~l~~fq~ 89 (102)
T PF14523_consen 10 QNVSQLEKLVNQLGTPRDSQELREKIHQLIQKTNQLIKEISELLKKLNSLSSDRSNDRQQKLQREKLSRDFKEALQEFQK 89 (102)
T ss_dssp HHHHHHHHHHHHH-SSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
No 406
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=52.56 E-value=1.2e+02 Score=34.19 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 238 QSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQR 279 (363)
Q Consensus 238 ESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~ 279 (363)
-++-.-=+++.-.+..||.+.-.|.+|+++|+-++..|+++.
T Consensus 156 natEEmLQqellsrtsLETqKlDLmaevSeLKLkltalEkeq 197 (861)
T KOG1899|consen 156 NATEEMLQQELLSRTSLETQKLDLMAEVSELKLKLTALEKEQ 197 (861)
T ss_pred chHHHHHHHHHHhhhhHHHHHhHHHHHHHHhHHHHHHHHHHh
Confidence 445555566777778999999999999999999999987544
No 407
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=52.39 E-value=1.5e+02 Score=33.69 Aligned_cols=44 Identities=30% Similarity=0.341 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037696 281 ILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 281 ~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq 324 (363)
.+..+-..|++|-..+-+-+--|+...|+|+-.|..|+..|-.|
T Consensus 908 ~~~~~ledL~qRy~a~LqmyGEk~Ee~EELrlDl~dlK~mYk~Q 951 (961)
T KOG4673|consen 908 GIKAELEDLRQRYAAALQMYGEKDEELEELRLDLVDLKEMYKEQ 951 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhHHHHHHHHHHH
Confidence 34444555555555554444446677788888888888888755
No 408
>PRK04863 mukB cell division protein MukB; Provisional
Probab=52.31 E-value=3.5e+02 Score=32.99 Aligned_cols=9 Identities=22% Similarity=0.246 Sum_probs=4.6
Q ss_pred CCChhhhhhcc
Q 037696 60 QPHWVDEFLDF 70 (363)
Q Consensus 60 ~psW~DefL~f 70 (363)
..+|+ +++|
T Consensus 84 ~~~Y~--~lef 92 (1486)
T PRK04863 84 GVCYA--ALDV 92 (1486)
T ss_pred CceEE--EEEE
Confidence 35665 3455
No 409
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=52.29 E-value=45 Score=32.79 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 244 RVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 244 R~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
..-+..+..+|..+.+.|+.++.++... ..+...|+.||..||.-|..
T Consensus 61 ~~~~~~~~~~~~~en~~Lk~~l~~~~~~----~~~~~~l~~EN~~Lr~lL~~ 108 (284)
T COG1792 61 VLEFLKSLKDLALENEELKKELAELEQL----LEEVESLEEENKRLKELLDF 108 (284)
T ss_pred HHHHHHHhHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCC
Confidence 3345555566666666666555554433 34456788888888876643
No 410
>PHA03162 hypothetical protein; Provisional
Probab=52.22 E-value=18 Score=32.70 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037696 272 VAFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~ 294 (363)
++.|..++..|.+||+.||.+|.
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~ 37 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIK 37 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666777899999999994
No 411
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=52.15 E-value=7.8 Score=35.45 Aligned_cols=19 Identities=26% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037696 257 SVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 257 kV~~Lq~ENs~Ls~ela~L 275 (363)
+|..|+.||..|..++...
T Consensus 30 qv~rL~qEN~~Lr~el~~t 48 (181)
T PF09311_consen 30 QVRRLCQENDWLRGELANT 48 (181)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444555444444433
No 412
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=52.09 E-value=1.7e+02 Score=27.37 Aligned_cols=47 Identities=30% Similarity=0.359 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 268 LSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVY 321 (363)
Q Consensus 268 Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~ 321 (363)
|..++..|+++...|..++..|+++...+..+ .+.|..-+.|-|.+.
T Consensus 109 ~~~e~~kl~~~~e~L~~e~~~L~~~~~~~~eD-------y~~Li~Im~rark~~ 155 (170)
T PRK13923 109 LSEQIGKLQEEEEKLSWENQTLKQELAITEED-------YRALIVIMNRARRMA 155 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHcc
Confidence 34556666666666666666666666555443 355555556555544
No 413
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=52.02 E-value=2.1e+02 Score=27.31 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
+..|+..+..|..+..........+......+...=..|...|..
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~ 98 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQN 98 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666555555555544444444444443333333
No 414
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=52.01 E-value=1e+02 Score=31.45 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHh
Q 037696 308 EALKKEIERLRQVYH 322 (363)
Q Consensus 308 E~LkkEIerLRql~~ 322 (363)
+.+.++|..+..++.
T Consensus 283 ~~~~k~~~~~~~~~~ 297 (406)
T PF02388_consen 283 ASLEKRIEEAEELIA 297 (406)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555554433
No 415
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=51.65 E-value=1.4e+02 Score=33.68 Aligned_cols=17 Identities=35% Similarity=0.378 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhh
Q 037696 308 EALKKEIERLRQVYHQQ 324 (363)
Q Consensus 308 E~LkkEIerLRql~~qq 324 (363)
|.-..-+++||.-+|.+
T Consensus 214 e~q~tlv~~LR~YvGeq 230 (739)
T PF07111_consen 214 EAQVTLVEQLRKYVGEQ 230 (739)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 33344466666666644
No 416
>PHA03155 hypothetical protein; Provisional
Probab=51.28 E-value=20 Score=31.71 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 272 VAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
++.|..++..|..||+.||.+|..
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 345555666678999999999854
No 417
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=51.17 E-value=94 Score=24.36 Aligned_cols=45 Identities=11% Similarity=0.287 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALA 297 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~ 297 (363)
+++.++..++.....+..++..|+.....+..+-..+..+|..+.
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~ 47 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK 47 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443
No 418
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=51.07 E-value=1.4e+02 Score=25.26 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVD 285 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~E 285 (363)
|+-|-..-+.+|..|+.++..|..++..|..++..-..|
T Consensus 40 KksYe~rwek~v~~L~~e~~~l~~E~e~L~~~l~~e~~E 78 (87)
T PF12709_consen 40 KKSYEARWEKKVDELENENKALKRENEQLKKKLDTEREE 78 (87)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566666666666666655555554444444
No 419
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=50.89 E-value=1.5e+02 Score=32.06 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRL 280 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~ 280 (363)
...++.+++.|+.+...|..++..|+.+..
T Consensus 558 ~~~~~~~~~~~e~~i~~le~~~~~l~~~l~ 587 (638)
T PRK10636 558 TQPLRKEIARLEKEMEKLNAQLAQAEEKLG 587 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355666777788888888777777776653
No 420
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=50.77 E-value=3.7e+02 Score=30.03 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHh
Q 037696 258 VTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD---------------KIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 258 V~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe---------------~~~KeA~~E~LkkEIerLRql~~ 322 (363)
+.....|+.-+..+++..++....|+.|+..|+.+++.-... +-.||-++..|-.+|++++..+.
T Consensus 230 ~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~ 309 (629)
T KOG0963|consen 230 VAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLV 309 (629)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666667777777777777776543221 12245555556666666655443
No 421
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=50.72 E-value=1.2e+02 Score=30.82 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 257 SVTTLQTEVSALSPR-----VAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 257 kV~~Lq~ENs~Ls~e-----la~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+...|..||.+|-.+ +..|.-++..-...|.+||..-..|
T Consensus 218 KCR~L~qENeElG~q~s~Gria~Le~eLAmQKs~seElkssq~eL 262 (330)
T KOG2991|consen 218 KCRTLQQENEELGHQASEGRIAELEIELAMQKSQSEELKSSQEEL 262 (330)
T ss_pred HHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHH
Confidence 334555666655433 2333333333334444444443333
No 422
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=50.69 E-value=84 Score=31.62 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVA-------FLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela-------~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
.++.++|.+|+.|+.-|..|..++. .+.+.-..+..|-..+..+|..|+..
T Consensus 217 dRmk~aEaqvneLEvsN~DLsaKLe~gknaY~~~ieke~q~raeL~acEEkl~kmeE~ 274 (311)
T PF04642_consen 217 DRMKEAEAQVNELEVSNIDLSAKLEPGKNAYLAAIEKENQARAELNACEEKLKKMEEE 274 (311)
T ss_pred HHHHHHHhhhhheecccHHHHHhhcCCcchHHHHHhhHHHHHHHHHHHHHHHhcccHH
Confidence 4567899999999999999999983 23344455666666777777666544
No 423
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=50.54 E-value=2.9e+02 Score=28.08 Aligned_cols=53 Identities=19% Similarity=0.146 Sum_probs=33.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 233 ILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVD 285 (363)
Q Consensus 233 ~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~E 285 (363)
.++|.+----+|.---+.++.||..+.++......|...+..|++.+..|+.-
T Consensus 75 ~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEra 127 (333)
T KOG1853|consen 75 QERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 34444444444555555567777777777777777777777777766666543
No 424
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=50.53 E-value=3.4e+02 Score=32.77 Aligned_cols=68 Identities=21% Similarity=0.295 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
.|+.+++.+..|...|..++.... ......+-..|..+.+.+..+...+..++..++..|.++|.-+.
T Consensus 1012 ~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~ 1079 (1294)
T KOG0962|consen 1012 NLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELR 1079 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 345555555555555544444333 23333344444444444444444444444444455544444433
No 425
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=50.51 E-value=2e+02 Score=26.18 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 240 AQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 240 AqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
+-.-|.++..+++.++..+...+.+...|...-..-..+...+..|-.+++.++..+..+. .. ..+.+++|++|...
T Consensus 126 ~l~~R~~~~~~~~~a~~~l~kkk~~~~kl~~~~~~~~~k~~~~~~ei~~~~~~~~~~~~~~--~~-is~~~k~E~~rf~~ 202 (236)
T PF09325_consen 126 ALNRRDKKLIEYQNAEKELQKKKAQLEKLKASGKNRQDKVEQAENEIEEAERRVEQAKDEF--EE-ISENIKKELERFEK 202 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHH
Confidence 3344444555555555555554444444443322223344444455555555555444322 22 23455666655443
No 426
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=50.50 E-value=2.6e+02 Score=32.95 Aligned_cols=34 Identities=26% Similarity=0.235 Sum_probs=16.8
Q ss_pred HHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 037696 230 VKRILANRQSAQRSRV-RKLQYISELERSVTTLQT 263 (363)
Q Consensus 230 ~RR~LsNRESAqRSR~-RKkqyIeELE~kV~~Lq~ 263 (363)
+|-.+.+|.+-+|-+. +|+.|..+||.....+..
T Consensus 641 ~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~ 675 (1072)
T KOG0979|consen 641 LKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKL 675 (1072)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666555433 344455555555544433
No 427
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=50.46 E-value=3e+02 Score=28.27 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNS---ALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~---~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
+|...+..++.+...|..++..|.++...+..+-. .+..++..|..+..+.....+.|.+..+..+.
T Consensus 314 ~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~ 383 (498)
T TIGR03007 314 QLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV 383 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555544444443332 23345556666665655555666655555443
No 428
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=50.22 E-value=79 Score=28.04 Aligned_cols=15 Identities=27% Similarity=0.476 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHh
Q 037696 308 EALKKEIERLRQVYH 322 (363)
Q Consensus 308 E~LkkEIerLRql~~ 322 (363)
+.+.++++.|+..+.
T Consensus 94 ~~l~e~l~eLq~~i~ 108 (119)
T COG1382 94 EKLQERLEELQSEIQ 108 (119)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 429
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=49.98 E-value=3.7e+02 Score=30.82 Aligned_cols=33 Identities=30% Similarity=0.308 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 244 RVRKLQYISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 244 R~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
|.-=.++|..||++|..+..|...|+.++..|.
T Consensus 404 ~~e~~QRva~lEkKvqa~~kERDalr~e~kslk 436 (961)
T KOG4673|consen 404 REEYHQRVATLEKKVQALTKERDALRREQKSLK 436 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 455567788888888888887777777766443
No 430
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=49.75 E-value=1.4e+02 Score=27.55 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=37.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 227 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQ 278 (363)
Q Consensus 227 ~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq 278 (363)
.+.++++|+.|.-|+-.=.+|=.-..+|..+++..+..+..|..+|+.|..+
T Consensus 83 ~~Em~KLi~yk~~aKsyAkkKD~Ea~~L~~KLkeEq~kv~~ME~~v~elas~ 134 (152)
T PF11500_consen 83 EKEMEKLIKYKQLAKSYAKKKDAEAMRLAEKLKEEQEKVAEMERHVTELASQ 134 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888888887777777778888888777777777776666665433
No 431
>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]
Probab=49.73 E-value=23 Score=33.49 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
-+-.|.+|..+++ ....++.+.||+.+|..|+.+..++...+..|
T Consensus 88 ~Ey~R~~~~e~~k------ee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L 132 (181)
T KOG3335|consen 88 FEYWRQARKERKK------EEKRKQEIMELRLKVEKLENAIAELTKFFSQL 132 (181)
T ss_pred ehhHHhhhcchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666655555 45566778888888888777666555554444
No 432
>PHA03011 hypothetical protein; Provisional
Probab=49.64 E-value=1.1e+02 Score=26.90 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 037696 257 SVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV 320 (363)
Q Consensus 257 kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql 320 (363)
.+..+.....+|..+...|.+++..++.|-+.|.+-++.- +-+.--|+.||.+|+.-
T Consensus 58 D~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~iIQdn-------~d~I~~LraeIDkLK~n 114 (120)
T PHA03011 58 DINAIIEILDELIAQYNELLDEYNLIENEIKDLEIIIQDN-------DDEIHFLRAEIDKLKEN 114 (120)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666666666666655555443 33344566777777653
No 433
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=49.57 E-value=1.7e+02 Score=29.22 Aligned_cols=16 Identities=6% Similarity=0.407 Sum_probs=7.8
Q ss_pred ccccchhhhhhccccc
Q 037696 128 CFDRLDDEQLMSMFSD 143 (363)
Q Consensus 128 ~fdr~dd~q~~smf~d 143 (363)
+|-....+-.|+|--.
T Consensus 69 ~~k~mtn~t~mk~Iee 84 (264)
T PF07246_consen 69 DLKEMTNKTMMKIIEE 84 (264)
T ss_pred chhhcchhhHHHHHHH
Confidence 4555555555554443
No 434
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=49.53 E-value=1.7e+02 Score=25.23 Aligned_cols=10 Identities=40% Similarity=0.730 Sum_probs=4.5
Q ss_pred CHHHHHHHHH
Q 037696 226 DPKRVKRILA 235 (363)
Q Consensus 226 D~KR~RR~Ls 235 (363)
|.++++|+++
T Consensus 14 ~dr~l~~l~k 23 (139)
T PF05615_consen 14 DDRPLKRLLK 23 (139)
T ss_pred CchhHHHHHH
Confidence 4444444433
No 435
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=49.53 E-value=2.4e+02 Score=33.32 Aligned_cols=64 Identities=25% Similarity=0.216 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037696 261 LQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 261 Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq 324 (363)
|++|...|..++..++...........-++.|...+..+....+...+.|+..|.+.|+...++
T Consensus 178 lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~ 241 (1109)
T PRK10929 178 LQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAER 241 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333333333333333333333333444444444444444443333
No 436
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=49.44 E-value=1.4e+02 Score=23.98 Aligned_cols=80 Identities=14% Similarity=0.221 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHH
Q 037696 244 RVRKLQYISELERSVTTLQTEVSALSPRVAFL-DHQRLILNVDNSALKQRIAALAQDKI-FKDAHQEALKKEIERLRQVY 321 (363)
Q Consensus 244 R~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L-~qq~~~L~~EN~~LKqrL~~L~qe~~-~KeA~~E~LkkEIerLRql~ 321 (363)
......++..|+..+..++........+|... ..-...|..+-..|-.+|........ .-....+.+...+..|+.+.
T Consensus 16 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~~~ 95 (127)
T smart00502 16 AAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSHAI 95 (127)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566667777776666666666666433 34445566666677777766554432 23334455556666665555
Q ss_pred hh
Q 037696 322 HQ 323 (363)
Q Consensus 322 ~q 323 (363)
..
T Consensus 96 ~~ 97 (127)
T smart00502 96 NF 97 (127)
T ss_pred HH
Confidence 43
No 437
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=49.40 E-value=2.1e+02 Score=30.29 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 037696 288 ALKQRIAALAQDKIFKDAHQEALKKEIERLR 318 (363)
Q Consensus 288 ~LKqrL~~L~qe~~~KeA~~E~LkkEIerLR 318 (363)
.|+.++..|..+..-.+....++..|++.+.
T Consensus 72 ~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~l 102 (429)
T COG0172 72 ELIAEVKELKEKLKELEAALDELEAELDTLL 102 (429)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444444444433223333344555554443
No 438
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=49.30 E-value=1.6e+02 Score=27.28 Aligned_cols=52 Identities=15% Similarity=0.307 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRVAFLDH------QRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~ela~L~q------q~~~L~~EN~~LKqrL~~L~q 298 (363)
++..++.|..++..++.+...|..++..+.. .+..+..+...|+.++..|..
T Consensus 67 ~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~ 124 (188)
T PF03962_consen 67 RQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKK 124 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677888888888888888777777642 333344444444444444433
No 439
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=49.26 E-value=1.2e+02 Score=28.25 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
.-|++|+.+++.|......++..+.-+..++. +++ +...+.|.++|..|++.|.+
T Consensus 79 eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~----------qes----------~~~veel~eqV~el~~i~em 133 (157)
T COG3352 79 EELERLEENIKDLVSLYELVSRDFNPFMSKTP----------QES----------RGIVEELEEQVNELKMIVEM 133 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhH----------HHH----------HHHHHHHHHHHHHHHHHHHH
Confidence 45677777888777777777766666543321 111 11345677777777777763
No 440
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=49.23 E-value=88 Score=34.08 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALK-QRIAALAQDKIFKDAHQEALKKEIERLRQV 320 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LK-qrL~~L~qe~~~KeA~~E~LkkEIerLRql 320 (363)
-.+-|+.++..|+.+......++...++++..+..++..+. ++|..|..++....+.....+...+.|+..
T Consensus 195 a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~ 266 (754)
T TIGR01005 195 AADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKA 266 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666666655544443443343 566666554433333333333344444433
No 441
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=48.87 E-value=2.1e+02 Score=32.59 Aligned_cols=57 Identities=18% Similarity=0.029 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 241 QRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALA 297 (363)
Q Consensus 241 qRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~ 297 (363)
.--+.-+..+....+.++..++.+...|+.++....+.+..+..+-..|+.+-..+.
T Consensus 512 ~~l~~~~~~k~~~~~q~~~~~~~~~~~~~~~l~~kke~i~q~re~~~~~~k~~l~~e 568 (809)
T KOG0247|consen 512 EILQNNKSLKEKECRQKLMNAQLESQMLSSQLNDKKEQIEQLRDEIERLKKENLTTE 568 (809)
T ss_pred HHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 334445556666677777777777777777776666666666555555555544443
No 442
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=48.80 E-value=1.7e+02 Score=30.38 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRL 280 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~ 280 (363)
-.+|.-|+++|..|...-..|.++|..+++++.
T Consensus 220 t~RMqvlkrQv~SL~~HQ~KLEaEL~q~Ee~hq 252 (410)
T KOG4715|consen 220 TARMQVLKRQVQSLMVHQRKLEAELLQIEERHQ 252 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999998888888888877765554
No 443
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=48.45 E-value=1.3e+02 Score=29.95 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 223 TIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 223 ~~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~ 294 (363)
..+.|||.+--.. ...-......+.+.+.++..++.+...|..++.....+...|..+-.....+|.
T Consensus 214 ~~V~P~~~~l~~a-----~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~ 280 (344)
T PF12777_consen 214 KEVEPKRQKLEEA-----EAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLE 280 (344)
T ss_dssp CCCCHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 4467887765322 222222333444444444444444444444444444444444444444444443
No 444
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=48.42 E-value=2.1e+02 Score=30.56 Aligned_cols=23 Identities=9% Similarity=0.310 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPR 271 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~e 271 (363)
.++..++.....|..|...|...
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444444444444444444333
No 445
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=48.36 E-value=2.1e+02 Score=30.57 Aligned_cols=61 Identities=20% Similarity=0.163 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 239 SAQRSRVRKLQYISELER-----SVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 239 SAqRSR~RKkqyIeELE~-----kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
=|.+-+..=++|++.||. .+..|..|...|..+-..|.++...|+.++..|-..|.++...
T Consensus 154 ~~~~e~~~Y~~~l~~Le~~~~~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~~~ 219 (447)
T KOG2751|consen 154 DAEDEVDTYKACLQRLEQQNQDVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELEFK 219 (447)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888886 4556777777777777777777888888887777777776554
No 446
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.27 E-value=2.5e+02 Score=33.63 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 239 SAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 239 SAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
+.+.+..+++..+..|+..+..+..|..+....+..+......|...-..|++++.++..
T Consensus 532 ~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~~~rqrveE~ks 591 (1293)
T KOG0996|consen 532 ASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLNKLRQRVEEAKS 591 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666666666666666666666665555555555566666665544
No 447
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.16 E-value=3.5e+02 Score=28.32 Aligned_cols=11 Identities=18% Similarity=0.117 Sum_probs=4.5
Q ss_pred HHHhHHHHHHH
Q 037696 233 ILANRQSAQRS 243 (363)
Q Consensus 233 ~LsNRESAqRS 243 (363)
..-+|..|-.+
T Consensus 225 eeme~~~aeq~ 235 (365)
T KOG2391|consen 225 EEMERLQAEQE 235 (365)
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 448
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=48.15 E-value=1.5e+02 Score=32.17 Aligned_cols=28 Identities=7% Similarity=0.257 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 237 RQSAQRSRVRKLQYISELERSVTTLQTE 264 (363)
Q Consensus 237 RESAqRSR~RKkqyIeELE~kV~~Lq~E 264 (363)
+..++....-+++-+++++.+|+.|+..
T Consensus 179 ~w~~~~~~Lp~~~~~~~yk~~v~~i~~~ 206 (555)
T TIGR03545 179 KWKKRKKDLPNKQDLEEYKKRLEAIKKK 206 (555)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHhc
Confidence 4444444444556777778888877764
No 449
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=47.94 E-value=59 Score=36.05 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+|-|-.--|.+|-.=| .+++|..+-..|+.|+.....--..|++++..|+.|-+.+|+++..-
T Consensus 314 LetKNALNiVKNDLIa---------kVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a 376 (832)
T KOG2077|consen 314 LETKNALNIVKNDLIA---------KVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA 376 (832)
T ss_pred HhhhhHHHHHHHHHHH---------HHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555433 35666666666666666655555556666666666666666665543
No 450
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=47.75 E-value=1.6e+02 Score=29.44 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
|.+.|..|..++..-..|..++..|
T Consensus 133 IR~~E~sl~p~R~~r~~l~d~I~kL 157 (271)
T PF13805_consen 133 IRNREESLQPSRDRRRKLQDEIAKL 157 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHhHHHHHHHHHH
Confidence 3344444444444444444444444
No 451
>PRK15396 murein lipoprotein; Provisional
Probab=47.74 E-value=1.4e+02 Score=24.58 Aligned_cols=16 Identities=38% Similarity=0.549 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSAL 268 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~L 268 (363)
.|..+|+.|..+...|
T Consensus 29 ~LssqV~~L~~kvdql 44 (78)
T PRK15396 29 QLSSDVQTLNAKVDQL 44 (78)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 452
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=47.58 E-value=4.6e+02 Score=30.99 Aligned_cols=44 Identities=16% Similarity=0.280 Sum_probs=29.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPR 271 (363)
Q Consensus 228 KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~e 271 (363)
+.++-+-.++.+-.+....|..++..|+.++..|+.++..+..+
T Consensus 181 ~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~rer 224 (1072)
T KOG0979|consen 181 IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVRER 224 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445666777777777777777777777777766655444
No 453
>PRK10963 hypothetical protein; Provisional
Probab=47.20 E-value=92 Score=29.33 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
+=.|+++..|+.+|..|..++..|.+ ...+|..|-.++..|...+.--+ -.+.+..-+..++..++
T Consensus 40 SL~ErQ~~~LR~r~~~Le~~l~~Li~----~A~~Ne~l~~~~~~l~l~Ll~a~-~~~~l~~~L~~~~~~f~ 105 (223)
T PRK10963 40 SLVEWQMARQRNHIHVLEEEMTLLME----QAIANEDLFYRLLPLQSRLAAAD-SLQDMLMRLHRWARDLG 105 (223)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHcC
Confidence 44566777777777777777776653 35678888888887766542211 12334444444444444
No 454
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=47.18 E-value=1.9e+02 Score=32.43 Aligned_cols=50 Identities=28% Similarity=0.269 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696 268 LSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERL 317 (363)
Q Consensus 268 Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerL 317 (363)
.+.++..|+-+.+.|..|-.++.+++++|.+....+..+.++|+.||+.-
T Consensus 91 Vs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieqa 140 (907)
T KOG2264|consen 91 VSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQA 140 (907)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHH
Confidence 33444555555666667777777777777766555555667777777653
No 455
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=46.76 E-value=1.6e+02 Score=32.02 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=35.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 230 VKRILANRQSAQRSRVRKLQYISEL--ERSVTTLQTEVSALSPR-------VAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 230 ~RR~LsNRESAqRSR~RKkqyIeEL--E~kV~~Lq~ENs~Ls~e-------la~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
++..-..+.++..-+.+=++.+.+| +.+++.++....+|... +....++...|..|-+..++++..+..
T Consensus 163 ~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~ 240 (555)
T TIGR03545 163 VETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKN 240 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334445555555555556677 55566666666666543 223344455555555555555554443
No 456
>PF14645 Chibby: Chibby family
Probab=46.64 E-value=80 Score=27.50 Aligned_cols=7 Identities=43% Similarity=0.805 Sum_probs=4.0
Q ss_pred hcccccc
Q 037696 138 MSMFSDD 144 (363)
Q Consensus 138 ~smf~d~ 144 (363)
|.+|+-.
T Consensus 1 Mp~F~~~ 7 (116)
T PF14645_consen 1 MPLFSRK 7 (116)
T ss_pred CCCccCC
Confidence 5566644
No 457
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=46.46 E-value=2.8e+02 Score=30.90 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 263 TEVSALSPRVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 263 ~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
.+...|..++..|..++..+..++......+..
T Consensus 248 ~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 280 (670)
T KOG0239|consen 248 QELEELKAELKELNDQVSLLTREVQEALKESNT 280 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444444444433333
No 458
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=46.40 E-value=50 Score=25.30 Aligned_cols=30 Identities=40% Similarity=0.646 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037696 287 SALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNI 326 (363)
Q Consensus 287 ~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~~ 326 (363)
.+|.++|+.|.. .+..||+.||..|+...+
T Consensus 11 ~eL~~rl~~LD~----------~ME~Eieelr~RY~~KRq 40 (49)
T PF11629_consen 11 EELQQRLASLDP----------EMEQEIEELRQRYQAKRQ 40 (49)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCH----------HHHHHHHHHHHHHHHhhc
Confidence 356677777633 466899999999986443
No 459
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=46.34 E-value=1.5e+02 Score=23.77 Aligned_cols=36 Identities=28% Similarity=0.423 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
++-..+..|-.||..|+.. |..-|..||++...|..
T Consensus 3 e~~~~l~~LL~EN~~LKea----------lrQ~N~~Mker~e~l~~ 38 (68)
T PF11577_consen 3 EMQQQLQELLQENQDLKEA----------LRQNNQAMKERFEELLA 38 (68)
T ss_dssp ----HHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 4455677788888888754 33458888888888755
No 460
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=46.29 E-value=78 Score=33.90 Aligned_cols=76 Identities=17% Similarity=0.319 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 037696 225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKD 304 (363)
Q Consensus 225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~Ke 304 (363)
.++|-+||+ |-+.|+|+--.|=.++.+. =+..|+.++..-..||++|+.++..|+.
T Consensus 245 aEEriLKrv--------RRKIrNK~SAQESRrkKke----------Yid~LE~rv~~~taeNqeL~kkV~~Le~------ 300 (472)
T KOG0709|consen 245 AEERILKRV--------RRKIRNKRSAQESRRKKKE----------YIDGLESRVSAFTAENQELQKKVEELEL------ 300 (472)
T ss_pred HHHHHHHHH--------HHHHHhhhhhHHHHHhHhh----------HHHHHhhhhhhcccCcHHHHHHHHHHhh------
Confidence 456666664 4455666654444444432 2445666667778999999999999966
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 037696 305 AHQEALKKEIERLRQVYHQQN 325 (363)
Q Consensus 305 A~~E~LkkEIerLRql~~qq~ 325 (363)
.|+.|...+..|..++.+..
T Consensus 301 -~N~sLl~qL~klQt~v~q~a 320 (472)
T KOG0709|consen 301 -SNRSLLAQLKKLQTLVIQVA 320 (472)
T ss_pred -ccHHHHHHHHHHHHHHhhcc
Confidence 56677777766766666433
No 461
>KOG2010 consensus Double stranded RNA binding protein [General function prediction only]
Probab=46.10 E-value=93 Score=32.34 Aligned_cols=45 Identities=18% Similarity=0.060 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
+.|||.+++....-|++|-.+-..|..+...|..+--++..+|..
T Consensus 121 v~EveekykkaMvsnaQLDNEKsnl~YqVDtLKD~LeE~eeqLae 165 (405)
T KOG2010|consen 121 VSEVEEKYKKAMVSNAQLDNEKNNLIYQVDTLKDVLEEQEEQLAE 165 (405)
T ss_pred hHHHHHHHHHHHHHHHhhcccccceeeeHHHHHHHHHHHHHHHHH
Confidence 455666666555555555555444444444444444444444433
No 462
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=45.96 E-value=1.7e+02 Score=28.06 Aligned_cols=7 Identities=14% Similarity=0.126 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 037696 267 ALSPRVA 273 (363)
Q Consensus 267 ~Ls~ela 273 (363)
.+..++.
T Consensus 101 ~~~~~~~ 107 (327)
T TIGR02971 101 AQQATLN 107 (327)
T ss_pred HHHHHHH
Confidence 3333333
No 463
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=45.62 E-value=1e+02 Score=30.49 Aligned_cols=15 Identities=13% Similarity=0.178 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHHH
Q 037696 281 ILNVDNSALKQRIAA 295 (363)
Q Consensus 281 ~L~~EN~~LKqrL~~ 295 (363)
.|..+-..++.++..
T Consensus 218 ~L~~~l~~~~~~l~~ 232 (362)
T TIGR01010 218 TLEGELIRVQAQLAQ 232 (362)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 464
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.60 E-value=3.2e+02 Score=27.14 Aligned_cols=86 Identities=16% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696 241 QRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSA---LKQRIAALAQDKIFKDAHQEALKKEIERL 317 (363)
Q Consensus 241 qRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~---LKqrL~~L~qe~~~KeA~~E~LkkEIerL 317 (363)
+++-.-+.+|+..|-+....++.-...|......+.+.+..+..++.. +.+.+..+.++.-+-...+..|+.|..++
T Consensus 40 ~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~ 119 (246)
T KOG4657|consen 40 RRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDDS 119 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q ss_pred HHHHhhhhh
Q 037696 318 RQVYHQQNI 326 (363)
Q Consensus 318 Rql~~qq~~ 326 (363)
+..+.++..
T Consensus 120 keiIs~kr~ 128 (246)
T KOG4657|consen 120 KEIISQKRQ 128 (246)
T ss_pred HHHHHHHHH
No 465
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=45.57 E-value=2.2e+02 Score=31.40 Aligned_cols=19 Identities=32% Similarity=0.405 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 037696 305 AHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 305 A~~E~LkkEIerLRql~~q 323 (363)
.....|++|.+-.+.+|..
T Consensus 370 ~~~~~L~R~~~~~~~lY~~ 388 (726)
T PRK09841 370 QEVLRLSRDVEAGRAVYLQ 388 (726)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445677777777777764
No 466
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.42 E-value=3.6e+02 Score=31.82 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 237 RQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQR 279 (363)
Q Consensus 237 RESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~ 279 (363)
++-++.-=.||...+++|++..+.|..+...+...+..|++|.
T Consensus 398 ~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 398 HQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677888888888888888888888777777777665
No 467
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=45.40 E-value=1.6e+02 Score=28.17 Aligned_cols=7 Identities=14% Similarity=0.572 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 037696 288 ALKQRIA 294 (363)
Q Consensus 288 ~LKqrL~ 294 (363)
..+.+|.
T Consensus 134 ~~~erl~ 140 (201)
T KOG4603|consen 134 GYRERLK 140 (201)
T ss_pred HHHHHHH
Confidence 3333333
No 468
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=45.20 E-value=2.2e+02 Score=35.34 Aligned_cols=65 Identities=22% Similarity=0.193 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 258 VTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 258 V~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
-..|+.+|..+..+++.|..+...|..+-.-|...+..|..+...+.|..+.|+.|..+-++-++
T Consensus 1231 N~~LRee~~~~~~k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q 1295 (1822)
T KOG4674|consen 1231 NKVLREENEANLEKIQELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQ 1295 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555555555555666666666777777777666554
No 469
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=45.14 E-value=1.1e+02 Score=35.44 Aligned_cols=92 Identities=17% Similarity=0.126 Sum_probs=55.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 037696 232 RILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALS-----PRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAH 306 (363)
Q Consensus 232 R~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls-----~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~ 306 (363)
|...++-...-....+..++..|..+++.|+.++..+. .++..|..+...|...|.+|.....+-...+-.+.+-
T Consensus 313 Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~~~~~~~~ei~sl~~e~~~l~~~~d~~~~e~~e~~s~~s~~~~~ 392 (913)
T KOG0244|consen 313 RAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSKAGDELDAEINSLPFENVTLEETLDALLQEKGEERSTLSSKSLK 392 (913)
T ss_pred HHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhhccccchhHHhhhhhhhhhhhhhHHHHhcchhhhhhhhhHHHHh
Confidence 43333334444448999999999999999999988765 5666666666666666666655554433333222222
Q ss_pred HHHHHHHHHHHHHHHhh
Q 037696 307 QEALKKEIERLRQVYHQ 323 (363)
Q Consensus 307 ~E~LkkEIerLRql~~q 323 (363)
.-...++...|+..+.-
T Consensus 393 ~~~~~~~k~k~~~~~~~ 409 (913)
T KOG0244|consen 393 LTGAEKEKDKLRRRTDS 409 (913)
T ss_pred cchhhhhHHHHHHHHHH
Confidence 22334555555555543
No 470
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=45.12 E-value=2.6e+02 Score=31.81 Aligned_cols=8 Identities=38% Similarity=0.983 Sum_probs=4.3
Q ss_pred hhhhhhcc
Q 037696 63 WVDEFLDF 70 (363)
Q Consensus 63 W~DefL~f 70 (363)
-+||||+.
T Consensus 381 LMDDFlEm 388 (769)
T PF05911_consen 381 LMDDFLEM 388 (769)
T ss_pred HHHHHHHH
Confidence 45555554
No 471
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=45.04 E-value=2e+02 Score=24.69 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 262 QTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 262 q~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
-.....+..+++.+..++..|..+|..|++++..|...
T Consensus 49 ~~~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 49 AADVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33455566666667777777777788888888777665
No 472
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=45.03 E-value=3.8e+02 Score=28.37 Aligned_cols=96 Identities=19% Similarity=0.233 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Q 037696 229 RVKRILANRQSAQRSRVRKLQY-----------ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVD----NSALKQRI 293 (363)
Q Consensus 229 R~RR~LsNRESAqRSR~RKkqy-----------IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~E----N~~LKqrL 293 (363)
|..|++...+.=..+=+.+... +++|..+...++.|+..|..++..+.-+...++.+ ...+++.+
T Consensus 243 kA~~iLq~kEklI~~LK~~~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~ 322 (511)
T PF09787_consen 243 KAQRILQSKEKLIESLKEGCLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQP 322 (511)
T ss_pred HHHHHhcCHHHHHHHHHhcccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred HHHHhHHHHH---HHHHHHHHHHHHHHHHHHhhh
Q 037696 294 AALAQDKIFK---DAHQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 294 ~~L~qe~~~K---eA~~E~LkkEIerLRql~~qq 324 (363)
..+....... ++..+.+..|+..++.-.+.+
T Consensus 323 ~~~~~~~~~~~~~e~e~~l~~~el~~~~ee~~~~ 356 (511)
T PF09787_consen 323 QELSQQLEPELTTEAELRLYYQELYHYREELSRQ 356 (511)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh
No 473
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=44.96 E-value=3.1e+02 Score=32.50 Aligned_cols=49 Identities=24% Similarity=0.253 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
..+||.+++.|......+..+...|......+...-.+|+..+..|+..
T Consensus 404 ~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~e~~~d~~~l~~~ 452 (1141)
T KOG0018|consen 404 RAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYEELKHDLDSLESL 452 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Confidence 4455555555555555555555555555555555555555555555443
No 474
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=44.71 E-value=3e+02 Score=29.36 Aligned_cols=18 Identities=17% Similarity=0.340 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037696 304 DAHQEALKKEIERLRQVY 321 (363)
Q Consensus 304 eA~~E~LkkEIerLRql~ 321 (363)
......|..|+.++|.-+
T Consensus 336 ~~~v~~L~~eL~~~r~eL 353 (522)
T PF05701_consen 336 SSEVSSLEAELNKTRSEL 353 (522)
T ss_pred HhHHhhHHHHHHHHHHHH
Confidence 333444455554444433
No 475
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=44.69 E-value=3.6e+02 Score=29.18 Aligned_cols=28 Identities=43% Similarity=0.563 Sum_probs=17.6
Q ss_pred hhhhccccccCC--CCCCCCCCCCCCCCCC
Q 037696 135 EQLMSMFSDDIS--VSVPPTASSSNPSTPS 162 (363)
Q Consensus 135 ~q~~smf~d~~~--~~~~~~~~~~~~s~~~ 162 (363)
+++.|.|++... .+..|+++...-++|+
T Consensus 118 ~t~~s~f~~a~a~svs~tPtasae~~~tpp 147 (506)
T KOG2507|consen 118 ETTASIFSAALASSVSETPTASAESVVTPP 147 (506)
T ss_pred HHHHHhhhhhhhhhccCCCccccccccCCC
Confidence 677889988864 4444555555555554
No 476
>PRK14143 heat shock protein GrpE; Provisional
Probab=44.61 E-value=2.6e+02 Score=27.27 Aligned_cols=70 Identities=13% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHh
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIF--KDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~--KeA~~E~LkkEIerLRql~~ 322 (363)
+++.++..|+.+...|..++..|..++..+.++...+|.|+..-..+... ..-+...|..=+..|-.++.
T Consensus 64 ~~~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~ 135 (238)
T PRK14143 64 DNAARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQ 135 (238)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
No 477
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=44.61 E-value=2.6e+02 Score=27.08 Aligned_cols=85 Identities=15% Similarity=0.127 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037696 245 VRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 245 ~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq 324 (363)
..|+.||++||.+++.|......|..+-..|-.-...+..--.. |+..+....+..++ ..|-.--.+|+.++..|
T Consensus 25 ~~k~~~ie~LE~qLk~L~k~~~~lv~~r~eLa~~~~eFa~s~~~----L~~~E~~~~Ls~al-s~laev~~~i~~~~~~q 99 (234)
T cd07665 25 EEKLQEVECEEQRLRKLHAVVETLVNHRKELALNTALFAKSLAM----LGSSEDNTALSRAL-SQLAEVEEKIEQLHQEQ 99 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhcccchhHHHHH-HHHHHHHHHHHHHHHHH
Q ss_pred hhhhhccccc
Q 037696 325 NIKKMKNNNN 334 (363)
Q Consensus 325 ~~~~~~~~~~ 334 (363)
...-+....+
T Consensus 100 a~qd~~~f~e 109 (234)
T cd07665 100 ANNDFFLLAE 109 (234)
T ss_pred HHHHHHHHhh
No 478
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=44.52 E-value=88 Score=24.45 Aligned_cols=37 Identities=30% Similarity=0.244 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 239 SAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 239 SAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
+.+-.-......+..++.++..++.||..|..++..|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 21 SAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 479
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=44.42 E-value=1.4e+02 Score=23.14 Aligned_cols=55 Identities=15% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHH
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRVAFLD-HQRLILNVDNSALKQRIAALAQDKI 301 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~ela~L~-qq~~~L~~EN~~LKqrL~~L~qe~~ 301 (363)
|+..|.+++..+.++......|..++..+- .....+...-+.+|..+..|..++.
T Consensus 23 r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 23 RKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc
No 480
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=44.37 E-value=1.5e+02 Score=24.67 Aligned_cols=68 Identities=24% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 037696 245 VRKLQYISELERSVTTLQTEVSA--------LSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIER 316 (363)
Q Consensus 245 ~RKkqyIeELE~kV~~Lq~ENs~--------Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIer 316 (363)
..|+.-|+.|-............ |..+--.-.+-...+..+-..|+.+|..+.. .|+.|..+|..
T Consensus 33 ~~kLneLd~Li~eA~~r~~~~~~~~~~~~~~l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~-------eN~~L~~~i~~ 105 (109)
T PF03980_consen 33 VEKLNELDKLIEEAKERKNSGEREKPVWRHSLTPEEDIRAHLAPYKKKEREQLNARLQELEE-------ENEALAEEIQE 105 (109)
T ss_pred HHHHHHHHHHHHHHHHhHhccccCCCCCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q ss_pred HHH
Q 037696 317 LRQ 319 (363)
Q Consensus 317 LRq 319 (363)
+|.
T Consensus 106 ~r~ 108 (109)
T PF03980_consen 106 QRK 108 (109)
T ss_pred hhc
No 481
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=44.35 E-value=2.4e+02 Score=25.30 Aligned_cols=90 Identities=14% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHH
Q 037696 238 QSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIF----KDAHQEALKKE 313 (363)
Q Consensus 238 ESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~----KeA~~E~LkkE 313 (363)
++..|-|.=--.-+.+|+.+|..|..|-..=..++..+--+++.|..+++.|+.-|..|+..+.. +.+..+.+.+.
T Consensus 3 e~l~kLkE~He~ev~glq~K~~~L~~erc~Daqrleel~~knqqLreQqk~L~e~i~~LE~RLRaGlCDRC~VtqE~akK 82 (120)
T PF10482_consen 3 ELLNKLKEIHEKEVQGLQNKLLELKKERCLDAQRLEELFSKNQQLREQQKTLHENIKVLENRLRAGLCDRCTVTQELAKK 82 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHcccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHH
Q ss_pred HHHHHHHHhhhhhh
Q 037696 314 IERLRQVYHQQNIK 327 (363)
Q Consensus 314 IerLRql~~qq~~~ 327 (363)
-+.==..-+.|+.+
T Consensus 83 ~qqefe~s~~qsLq 96 (120)
T PF10482_consen 83 KQQEFESSHLQSLQ 96 (120)
T ss_pred HHHHHHhHHHHHHH
No 482
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=44.20 E-value=2.7e+02 Score=31.38 Aligned_cols=75 Identities=23% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 245 VRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 245 ~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
...+.-+.........|...+..|......++.+...|..|-+++|.|=..|-+++---+.+|=.|+|-|-.||+
T Consensus 44 k~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQKqvs~Lk~ 118 (717)
T PF09730_consen 44 KQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQKQVSVLKQ 118 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
No 483
>PF06216 RTBV_P46: Rice tungro bacilliform virus P46 protein; InterPro: IPR009347 This family consists of several Rice tungro bacilliform virus P46 proteins. The function of this family is unknown.
Probab=43.65 E-value=1.2e+02 Score=30.81 Aligned_cols=65 Identities=20% Similarity=0.230 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEI 314 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEI 314 (363)
+...+.-|..-+=-++.|....+.+...|..|...|...|..||+||..... .-+.+.|-+++-|
T Consensus 55 rvrklh~~~~~~y~~e~e~~sy~~e~~~l~~qvs~l~~~~~~~r~~~~~~~~---~~eglrep~kkpi 119 (389)
T PF06216_consen 55 RVRKLHIISDYIYNKEFERQSYSNEWISLNDQVSHLQHQNSEQRQQIREMRE---IIEGLREPVKKPI 119 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhcCCc
No 484
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.62 E-value=3.4e+02 Score=26.94 Aligned_cols=92 Identities=11% Similarity=0.139 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 037696 230 VKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEA 309 (363)
Q Consensus 230 ~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~ 309 (363)
.+|++.+-..=.|-=-++++-.+.|+..+.+.+.|...-..-+..-......+..|-..++++|..|....+++..+-..
T Consensus 39 r~~~~nS~~efar~lS~~~~e~e~l~~~l~etene~~~~neL~~ek~~~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd 118 (246)
T KOG4657|consen 39 RRRSMNSLVEFARALSQSQVELENLKADLRETENELVKVNELKTEKEARQMGIEQEIKATQSELEVLRRNLQLLKEEKDD 118 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHH
Q 037696 310 LKKEIERLRQVY 321 (363)
Q Consensus 310 LkkEIerLRql~ 321 (363)
+++=|-.-|+++
T Consensus 119 ~keiIs~kr~~~ 130 (246)
T KOG4657|consen 119 SKEIISQKRQAL 130 (246)
T ss_pred HHHHHHHHHHHH
No 485
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=43.51 E-value=4.6e+02 Score=28.80 Aligned_cols=93 Identities=17% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 037696 234 LANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKE 313 (363)
Q Consensus 234 LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkE 313 (363)
+.|-.+--+-=.-|-+-..++-..++.|+..-..|..-...++....+|...-+..--.|..|..+...|+.+.+.|+..
T Consensus 273 i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~ 352 (622)
T COG5185 273 IANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSN 352 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHhhhhh
Q 037696 314 IERLRQVYHQQNI 326 (363)
Q Consensus 314 IerLRql~~qq~~ 326 (363)
+..|+..+-.|.+
T Consensus 353 ~d~L~~q~~kq~I 365 (622)
T COG5185 353 IDELHKQLRKQGI 365 (622)
T ss_pred HHHHHHHHHhcCC
No 486
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=43.37 E-value=1.6e+02 Score=25.34 Aligned_cols=52 Identities=21% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 233 ILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSAL 289 (363)
Q Consensus 233 ~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~L 289 (363)
|-.||++++--+.-+..|--.|..+. |+..|..++..+.++......+..++
T Consensus 55 msQNRq~~~dr~ra~~D~~inl~ae~-----ei~~l~~~l~~l~~~~~~~~~~~~~~ 106 (108)
T PF06210_consen 55 MSQNRQAARDRLRAELDYQINLKAEQ-----EIERLHRKLDALREKLGELLERDQER 106 (108)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHhHHHHHHHHHh
No 487
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=43.21 E-value=2.4e+02 Score=25.85 Aligned_cols=64 Identities=27% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696 244 RVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERL 317 (363)
Q Consensus 244 R~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerL 317 (363)
+..+.....++...|..|..+...-..+++.|..-...-...-..|..++.+|.. .|.-|++.|
T Consensus 49 ~~~~~r~~~~~~~~v~~~~~~i~~k~~El~~L~~~d~~kv~~~E~L~d~v~eLke----------el~~el~~l 112 (146)
T PF05852_consen 49 SHNSLREECEIKNKVSSLETEISEKKKELSHLKKFDRKKVEDLEKLTDRVEELKE----------ELEFELERL 112 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH
No 488
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=43.13 E-value=1.7e+02 Score=24.62 Aligned_cols=48 Identities=15% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
.+-+..|...+.+|..-...|..+...|..++..|...|++.|.+++.
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
No 489
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=43.01 E-value=1.3e+02 Score=32.61 Aligned_cols=59 Identities=25% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
|+.-++||..+|..|..-+..|..+ .-++|++-+..|..++.++- .|+-||+.|+.++.
T Consensus 567 ~k~s~delr~qi~el~~ive~lk~~-------------~~kel~kl~~dleeek~mr~----~lemei~~lkka~~ 625 (627)
T KOG4348|consen 567 KKNSLDELRAQIIELLCIVEALKKD-------------HGKELEKLRKDLEEEKTMRS----NLEMEIEKLKKAVL 625 (627)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHh----hhHhhHHHHHHHhh
No 490
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=42.73 E-value=2.2e+02 Score=29.23 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHH
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRVAFL------------DHQRLILNVDNS-ALKQRIAALAQDKIFKDAHQEALKKE 313 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~ela~L------------~qq~~~L~~EN~-~LKqrL~~L~qe~~~KeA~~E~LkkE 313 (363)
|...+.+|+.++..|+.+..++..++..+ +.+...|..+.. .+.+++..+..+....++..+.++..
T Consensus 234 ~~~~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~l~~~~~~l~~a~~~ 313 (457)
T TIGR01000 234 KSTILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQLAKVKQEITDLNQKLLELESKIKSLKED 313 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 037696 314 IER 316 (363)
Q Consensus 314 Ier 316 (363)
+.+
T Consensus 314 l~~ 316 (457)
T TIGR01000 314 SQK 316 (457)
T ss_pred HhC
No 491
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=42.53 E-value=1.8e+02 Score=30.72 Aligned_cols=105 Identities=13% Similarity=0.081 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 220 NGDTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 220 ~~~~~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
..+...++|..||+..--+==||-|.+=..+|.||-.-|=.+..+..++. ...........-.+-++-.+++.++.+.
T Consensus 221 ~~~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~n--KgtILk~s~dYIr~Lqq~~q~~~E~~~r 298 (411)
T KOG1318|consen 221 KTDATALERDRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSN--KGTILKASCDYIRELQQTLQRARELENR 298 (411)
T ss_pred CcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcc--cchhhHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037696 300 KIFKDAHQEALKKEIERLRQVYHQQNI 326 (363)
Q Consensus 300 ~~~KeA~~E~LkkEIerLRql~~qq~~ 326 (363)
+..-+.-+..|..+|+.|+...+....
T Consensus 299 qk~le~~n~~L~~rieeLk~~~~~~~~ 325 (411)
T KOG1318|consen 299 QKKLESTNQELALRIEELKSEAGRHGL 325 (411)
T ss_pred hhHHHhHHHHHHHHHHHHHHHHHHhcC
No 492
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=42.44 E-value=5.6e+02 Score=30.49 Aligned_cols=109 Identities=15% Similarity=0.259 Sum_probs=0.0
Q ss_pred CHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 037696 226 DPKRVKR-ILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKD 304 (363)
Q Consensus 226 D~KR~RR-~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~Ke 304 (363)
|-||-|= .++|-.-++.-=..=++-+++++..|.....+...|..+++.++.+......+-..|+..+..+.++...-.
T Consensus 661 D~krsrLe~~k~~~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~ 740 (1200)
T KOG0964|consen 661 DQKRSRLELLKNVNESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQ 740 (1200)
T ss_pred hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccccc
Q 037696 305 AHQEALKKEIERLRQVYHQQNIKKMKNNNN 334 (363)
Q Consensus 305 A~~E~LkkEIerLRql~~qq~~~~~~~~~~ 334 (363)
...+.-.++++.++.-+.+...+.-...++
T Consensus 741 ~s~~~k~~~Le~i~~~l~~~~~~~~~~e~e 770 (1200)
T KOG0964|consen 741 ESLEPKGKELEEIKTSLHKLESQSNYFESE 770 (1200)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhHHHH
No 493
>KOG4848 consensus Extracellular matrix-associated peroxidase [Extracellular structures; Defense mechanisms]
Probab=42.35 E-value=3.3e+02 Score=26.49 Aligned_cols=72 Identities=18% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696 246 RKLQYISELERSVTTLQT----EVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERL 317 (363)
Q Consensus 246 RKkqyIeELE~kV~~Lq~----ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerL 317 (363)
+|+.|.+-|-...+.|.. |-.....+.+.+......+-.-...+.++|..-.+++..+..-.|.|..||+++
T Consensus 104 ~~~e~~e~l~km~EslRi~~~~e~~k~~~Re~~iak~m~K~pq~~a~~~a~~~k~e~~a~a~~~r~erli~eiqe~ 179 (225)
T KOG4848|consen 104 AKKEYKELLKKMRESLRILYTKEPEKFTFREAEIAKNMKKYPQTLAKYEASLVKQEQEADAKEVRLERLIREIQEY 179 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHH
No 494
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=42.32 E-value=6.6e+02 Score=29.86 Aligned_cols=92 Identities=16% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Q 037696 227 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ-------- 298 (363)
Q Consensus 227 ~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q-------- 298 (363)
.|+++|--.--.-|+..+.|-++.+.++-..++.+.-+..--..+...|+.....|...+.+|...|.-|..
T Consensus 282 qrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~ 361 (1243)
T KOG0971|consen 282 QRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDLEILKAEMEEKGSD 361 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q ss_pred -------HHHHHHHHHHHHHHHHHHHH
Q 037696 299 -------DKIFKDAHQEALKKEIERLR 318 (363)
Q Consensus 299 -------e~~~KeA~~E~LkkEIerLR 318 (363)
+..--+-.|..|+.-+-|||
T Consensus 362 ~~~~ss~qfkqlEqqN~rLKdalVrLR 388 (1243)
T KOG0971|consen 362 GQAASSYQFKQLEQQNARLKDALVRLR 388 (1243)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHH
No 495
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.22 E-value=1.8e+02 Score=32.40 Aligned_cols=64 Identities=20% Similarity=0.306 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
.++.+-+..|+.....-..+++.+++++..+..--..|..|+.+... .+|.|...+++|++..+
T Consensus 584 ~e~qrH~~~l~~~k~~QlQ~l~~~~eer~~i~e~a~~La~R~eea~e-------~qe~L~~~~~~L~~~~~ 647 (741)
T KOG4460|consen 584 EEIQRHVKLLCDQKKKQLQDLSYCREERKSLREMAERLADRYEEAKE-------KQEDLMNRMKKLLHSFH 647 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHhccc
No 496
>PLN02320 seryl-tRNA synthetase
Probab=42.13 E-value=2.4e+02 Score=30.48 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHhHHH
Q 037696 226 DPKRVKRILANRQSA--QRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDH--QRLILNVDNSALKQRIAALAQDKI 301 (363)
Q Consensus 226 D~KR~RR~LsNRESA--qRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~q--q~~~L~~EN~~LKqrL~~L~qe~~ 301 (363)
++..+++.+++|-.. -.-=...-+....|..++..|+.+-..++.++..... ....|..|-+.||++|..|+.+..
T Consensus 75 n~~~v~~~l~~R~~~~~vd~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~ 154 (502)
T PLN02320 75 NKEAVAINIRNRNSNANLELVLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLV 154 (502)
T ss_pred CHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 037696 302 FKDAHQEALKKEI 314 (363)
Q Consensus 302 ~KeA~~E~LkkEI 314 (363)
-.+...+.+...|
T Consensus 155 ~~~~~l~~~~l~i 167 (502)
T PLN02320 155 KLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHhC
No 497
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=41.97 E-value=1.9e+02 Score=24.13 Aligned_cols=50 Identities=24% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
+.+++|-..|+.|......|...+..+..+...-..|+..-++||....+
T Consensus 25 aK~dqlss~vq~LnAkv~qLe~dv~a~~~~~qAAk~eaarAn~rldn~a~ 74 (78)
T COG4238 25 AKIDQLSSDVQTLNAKVDQLENDVNAMRSDVQAAKDEAARANQRLDNQAQ 74 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
No 498
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=41.95 E-value=1.8e+02 Score=23.23 Aligned_cols=69 Identities=16% Similarity=0.262 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNV-DNSA-------LKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~-EN~~-------LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
|+.+..+|..|...=..|...+..+...+..+.. +... ...+|..+..+...-......+++.+.+|.+
T Consensus 16 l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~q 92 (92)
T PF14712_consen 16 LDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDPYVKKLVNIKKRMSNLHERLQKLKKRADKLQQ 92 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 499
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=41.91 E-value=1.1e+02 Score=31.51 Aligned_cols=50 Identities=12% Similarity=0.199 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.....|+.+...|+.++..|..++..+..+...+..|...|+.+|..|..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (398)
T PTZ00454 15 HTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLKRELIRAKEEVKRIQS 64 (398)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 500
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=41.82 E-value=1e+02 Score=31.20 Aligned_cols=48 Identities=19% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
+..|+.++..|+.++..|..++..|..+...+..+-..|+.++..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (389)
T PRK03992 3 LEALEERNSELEEQIRQLELKLRDLEAENEKLERELERLKSELEKLKS 50 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Done!