Query 037696
Match_columns 363
No_of_seqs 189 out of 795
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 05:17:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037696.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037696hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dh3_A Transcription factor CR 99.5 3.8E-14 1.3E-18 105.9 6.3 51 228-278 1-51 (55)
2 2wt7_A Proto-oncogene protein 99.3 1.6E-11 5.6E-16 93.4 9.4 53 227-279 1-53 (63)
3 1t2k_D Cyclic-AMP-dependent tr 99.2 2.9E-11 9.9E-16 91.1 8.9 59 228-293 1-59 (61)
4 1jnm_A Proto-oncogene C-JUN; B 99.1 1.2E-10 4E-15 88.2 7.5 51 228-278 1-51 (62)
5 2dgc_A Protein (GCN4); basic d 99.1 2.8E-10 9.7E-15 87.0 7.0 52 226-278 8-59 (63)
6 1gd2_E Transcription factor PA 98.9 1.8E-09 6E-14 84.6 7.4 65 226-290 6-70 (70)
7 1ci6_A Transcription factor AT 98.8 6E-09 2E-13 79.5 7.1 59 228-293 2-60 (63)
8 1gu4_A CAAT/enhancer binding p 98.5 8.6E-07 3E-11 70.6 10.1 55 222-276 9-63 (78)
9 1hjb_A Ccaat/enhancer binding 98.4 1.2E-06 4.2E-11 71.1 10.2 55 222-276 9-63 (87)
10 3a5t_A Transcription factor MA 98.2 4.4E-08 1.5E-12 82.3 -4.4 50 225-274 34-83 (107)
11 2wt7_B Transcription factor MA 98.2 3.8E-06 1.3E-10 68.7 7.0 69 220-295 19-87 (90)
12 2oqq_A Transcription factor HY 97.5 0.00021 7.2E-09 51.2 6.1 40 248-294 2-41 (42)
13 2jee_A YIIU; FTSZ, septum, coi 96.5 0.036 1.2E-06 44.6 11.2 68 249-323 6-77 (81)
14 1skn_P DNA-binding domain of S 95.9 0.0032 1.1E-07 51.7 2.2 36 221-256 55-90 (92)
15 3ol1_A Vimentin; structural ge 95.1 0.42 1.4E-05 40.0 12.6 74 250-323 21-108 (119)
16 3s4r_A Vimentin; alpha-helix, 94.7 0.52 1.8E-05 38.1 11.7 64 256-319 23-91 (93)
17 3hnw_A Uncharacterized protein 94.2 0.34 1.2E-05 41.8 10.2 51 248-298 74-124 (138)
18 3oja_B Anopheles plasmodium-re 93.7 2.3 7.8E-05 42.1 16.3 75 252-326 505-579 (597)
19 3o0z_A RHO-associated protein 93.6 1.3 4.4E-05 39.8 13.1 84 238-323 25-115 (168)
20 2dfs_A Myosin-5A; myosin-V, in 93.2 1.5 5.3E-05 48.4 15.5 16 282-297 1028-1043(1080)
21 2w6a_A ARF GTPase-activating p 93.0 0.39 1.3E-05 36.8 7.4 41 251-291 22-62 (63)
22 2jee_A YIIU; FTSZ, septum, coi 92.9 0.58 2E-05 37.6 8.6 46 251-296 22-67 (81)
23 3o0z_A RHO-associated protein 92.6 3.9 0.00013 36.7 14.4 81 232-322 73-153 (168)
24 1deb_A APC protein, adenomatou 92.3 0.87 3E-05 34.0 8.2 46 251-296 5-50 (54)
25 3cvf_A Homer-3, homer protein 92.2 0.33 1.1E-05 38.8 6.4 45 253-297 10-54 (79)
26 3a7p_A Autophagy protein 16; c 92.0 0.79 2.7E-05 40.6 9.2 16 281-296 100-115 (152)
27 3swk_A Vimentin; cytoskeleton, 91.7 0.72 2.5E-05 36.8 7.9 69 252-320 3-85 (86)
28 3qh9_A Liprin-beta-2; coiled-c 91.5 1.9 6.7E-05 34.6 10.1 63 252-314 15-77 (81)
29 2dfs_A Myosin-5A; myosin-V, in 90.6 3.1 0.0001 46.1 14.1 64 254-320 975-1038(1080)
30 3cve_A Homer protein homolog 1 90.5 4.3 0.00015 31.9 11.0 47 252-298 3-49 (72)
31 3cvf_A Homer-3, homer protein 90.3 2 6.9E-05 34.2 9.2 51 272-322 8-58 (79)
32 1hjb_A Ccaat/enhancer binding 90.3 2.8 9.7E-05 33.7 10.2 39 272-324 38-76 (87)
33 3efg_A Protein SLYX homolog; x 90.2 0.72 2.5E-05 36.4 6.5 45 250-294 15-59 (78)
34 1i84_S Smooth muscle myosin he 89.6 3.1 0.00011 45.9 13.1 44 251-294 859-902 (1184)
35 1gu4_A CAAT/enhancer binding p 89.3 2.2 7.4E-05 33.8 8.6 39 271-323 37-75 (78)
36 3cve_A Homer protein homolog 1 89.2 2 6.8E-05 33.8 8.2 48 275-322 5-52 (72)
37 1go4_E MAD1 (mitotic arrest de 89.0 3.3 0.00011 34.4 9.8 66 250-322 13-92 (100)
38 2v71_A Nuclear distribution pr 88.4 9.3 0.00032 34.7 13.2 22 246-267 21-42 (189)
39 3hnw_A Uncharacterized protein 88.2 4.1 0.00014 35.0 10.4 39 260-298 72-110 (138)
40 3u1c_A Tropomyosin alpha-1 cha 88.2 9.2 0.00031 31.0 15.4 59 240-298 14-72 (101)
41 3oja_B Anopheles plasmodium-re 88.1 4.1 0.00014 40.3 11.7 30 267-296 506-535 (597)
42 3s9g_A Protein hexim1; cyclin 88.1 2.6 8.7E-05 35.3 8.5 15 254-268 42-56 (104)
43 2eqb_B RAB guanine nucleotide 88.0 10 0.00035 31.3 12.5 57 248-305 11-67 (97)
44 3m48_A General control protein 87.6 0.61 2.1E-05 31.9 3.7 26 251-276 2-27 (33)
45 2oxj_A Hybrid alpha/beta pepti 87.6 0.71 2.4E-05 31.7 4.1 27 250-276 2-28 (34)
46 3he5_A Synzip1; heterodimeric 87.5 2.2 7.6E-05 30.7 6.8 16 306-321 32-47 (49)
47 3u1c_A Tropomyosin alpha-1 cha 87.1 11 0.00037 30.6 15.1 79 237-315 18-96 (101)
48 1t2k_D Cyclic-AMP-dependent tr 86.9 4.1 0.00014 30.0 8.3 26 271-296 23-48 (61)
49 1i84_S Smooth muscle myosin he 86.8 3.8 0.00013 45.3 11.6 19 278-296 914-932 (1184)
50 3tnu_A Keratin, type I cytoske 86.7 12 0.00042 31.2 12.2 48 274-321 81-128 (131)
51 2v71_A Nuclear distribution pr 86.5 8.5 0.00029 35.0 11.9 24 252-275 45-68 (189)
52 3swy_A Cyclic nucleotide-gated 86.2 3.7 0.00013 29.7 7.5 43 253-298 2-44 (46)
53 2wt7_B Transcription factor MA 86.0 13 0.00043 30.3 11.4 63 252-322 24-86 (90)
54 3m9b_A Proteasome-associated A 85.8 0.73 2.5E-05 43.7 4.6 38 275-319 59-96 (251)
55 3u59_A Tropomyosin beta chain; 85.8 12 0.00042 30.0 15.3 77 241-317 15-91 (101)
56 2v4h_A NF-kappa-B essential mo 85.4 16 0.00054 30.9 12.0 74 230-321 26-99 (110)
57 1kd8_B GABH BLL, GCN4 acid bas 85.4 1.5 5.1E-05 30.5 4.8 28 250-277 2-29 (36)
58 3a7p_A Autophagy protein 16; c 85.4 11 0.00036 33.5 11.5 40 256-295 96-135 (152)
59 3c3f_A Alpha/beta peptide with 84.9 1.2 4.1E-05 30.6 4.1 27 250-276 2-28 (34)
60 3tnu_B Keratin, type II cytosk 84.5 15 0.00052 30.5 11.7 41 280-320 85-125 (129)
61 3na7_A HP0958; flagellar bioge 84.1 25 0.00085 32.1 15.8 44 253-296 94-137 (256)
62 3swf_A CGMP-gated cation chann 83.9 3.6 0.00012 32.6 7.0 45 252-299 3-47 (74)
63 2w83_C C-JUN-amino-terminal ki 83.8 7.4 0.00025 31.0 8.8 57 252-322 5-61 (77)
64 3a2a_A Voltage-gated hydrogen 83.6 2.4 8.2E-05 32.1 5.6 15 312-326 39-53 (58)
65 2kz5_A Transcription factor NF 83.6 0.11 3.7E-06 42.7 -1.8 27 224-250 62-88 (91)
66 3m91_A Proteasome-associated A 83.3 4.4 0.00015 29.8 6.9 15 254-268 14-28 (51)
67 1fmh_A General control protein 83.1 2 6.8E-05 28.8 4.5 28 251-278 3-30 (33)
68 1kd8_A GABH AIV, GCN4 acid bas 82.8 1.5 5.3E-05 30.4 4.0 28 250-277 2-29 (36)
69 3i00_A HIP-I, huntingtin-inter 82.8 15 0.0005 31.1 10.9 48 244-298 35-82 (120)
70 3vmx_A Voltage-gated hydrogen 82.4 5.7 0.00019 29.2 7.1 14 310-323 30-43 (48)
71 3c3g_A Alpha/beta peptide with 82.4 1.8 6E-05 29.6 4.1 26 251-276 2-27 (33)
72 1gd2_E Transcription factor PA 82.3 2.8 9.7E-05 32.5 5.9 34 266-299 32-65 (70)
73 1nkp_B MAX protein, MYC proto- 82.2 1.7 5.7E-05 33.7 4.6 18 279-296 63-80 (83)
74 2hy6_A General control protein 82.1 1.7 5.7E-05 29.9 3.9 27 250-276 2-28 (34)
75 2wt7_A Proto-oncogene protein 82.0 14 0.00046 27.5 9.5 25 272-296 25-49 (63)
76 3m48_A General control protein 81.8 1.9 6.5E-05 29.5 4.1 18 306-323 15-32 (33)
77 3vmx_A Voltage-gated hydrogen 81.8 5.4 0.00019 29.3 6.8 39 255-293 3-41 (48)
78 2ocy_A RAB guanine nucleotide 81.7 21 0.00071 31.5 11.9 55 250-305 45-99 (154)
79 2bni_A General control protein 81.6 1.8 6.1E-05 29.8 3.9 27 250-276 2-28 (34)
80 1uo4_A General control protein 81.4 1.8 6.2E-05 29.7 3.9 27 250-276 2-28 (34)
81 3i00_A HIP-I, huntingtin-inter 81.1 19 0.00065 30.4 11.0 67 249-318 15-81 (120)
82 2wq1_A General control protein 81.0 2.1 7.2E-05 29.2 4.1 26 251-276 2-27 (33)
83 3a7o_A Autophagy protein 16; c 81.0 6.2 0.00021 31.2 7.3 44 255-298 31-74 (75)
84 3he5_A Synzip1; heterodimeric 80.8 8 0.00027 27.9 7.3 43 250-292 4-46 (49)
85 4etp_A Kinesin-like protein KA 80.1 5.1 0.00018 39.5 8.3 13 306-318 46-58 (403)
86 1jnm_A Proto-oncogene C-JUN; B 79.9 5.7 0.00019 29.4 6.6 25 272-296 24-48 (62)
87 1ci6_A Transcription factor AT 79.8 6.4 0.00022 29.5 6.9 29 270-298 23-51 (63)
88 3a2a_A Voltage-gated hydrogen 79.6 5 0.00017 30.4 6.1 37 255-291 10-46 (58)
89 2oxj_A Hybrid alpha/beta pepti 79.6 2.9 0.0001 28.7 4.4 17 306-322 16-32 (34)
90 3s4r_A Vimentin; alpha-helix, 79.5 11 0.00037 30.3 8.7 49 272-322 18-66 (93)
91 4emc_A Monopolin complex subun 79.3 10 0.00035 34.7 9.3 44 250-300 14-57 (190)
92 2eqb_B RAB guanine nucleotide 79.3 12 0.00042 30.8 9.0 25 305-329 47-71 (97)
93 3u06_A Protein claret segregat 79.1 5.1 0.00018 39.8 8.0 52 260-318 7-58 (412)
94 1wle_A Seryl-tRNA synthetase; 78.7 41 0.0014 34.3 14.6 91 222-315 38-147 (501)
95 2j5u_A MREC protein; bacterial 78.2 1 3.5E-05 41.8 2.5 42 280-325 22-63 (255)
96 3s9g_A Protein hexim1; cyclin 77.9 15 0.00051 30.7 9.1 45 275-319 42-86 (104)
97 2yy0_A C-MYC-binding protein; 77.8 4.4 0.00015 29.8 5.3 18 257-274 20-37 (53)
98 3u59_A Tropomyosin beta chain; 77.6 26 0.00088 28.1 15.1 78 238-315 19-96 (101)
99 3mq7_A Bone marrow stromal ant 77.4 12 0.00041 32.0 8.6 34 279-319 73-106 (121)
100 2ve7_C Kinetochore protein NUF 76.7 2.5 8.6E-05 39.3 4.7 61 225-299 117-177 (250)
101 1nlw_A MAD protein, MAX dimeri 76.6 4.7 0.00016 31.5 5.6 29 248-276 46-74 (80)
102 3oja_A Leucine-rich immune mol 76.6 28 0.00096 33.7 12.3 25 272-296 437-461 (487)
103 2c9l_Y EB1, zebra, BZLF1 trans 76.5 13 0.00045 28.2 7.6 35 234-268 7-41 (63)
104 3mq9_A Bone marrow stromal ant 76.3 57 0.002 31.4 15.3 28 291-318 443-470 (471)
105 3cl3_D NF-kappa-B essential mo 74.5 5.5 0.00019 34.5 5.8 42 282-323 53-94 (130)
106 1dip_A Delta-sleep-inducing pe 74.2 2.5 8.6E-05 33.7 3.4 28 264-291 16-43 (78)
107 3m9b_A Proteasome-associated A 73.3 4 0.00014 38.7 5.2 41 251-298 56-96 (251)
108 3nmd_A CGMP dependent protein 73.3 8 0.00027 30.4 6.0 30 290-319 39-68 (72)
109 1wt6_A Myotonin-protein kinase 73.0 35 0.0012 27.4 10.2 57 236-295 14-70 (81)
110 1uo4_A General control protein 72.9 5.3 0.00018 27.4 4.2 17 307-323 17-33 (34)
111 2dq0_A Seryl-tRNA synthetase; 72.8 43 0.0015 33.5 12.8 27 253-279 35-61 (455)
112 2v4h_A NF-kappa-B essential mo 72.7 42 0.0014 28.3 11.4 39 258-296 64-102 (110)
113 1x8y_A Lamin A/C; structural p 72.6 33 0.0011 27.0 11.0 52 271-322 29-80 (86)
114 3c3g_A Alpha/beta peptide with 72.4 6.3 0.00022 26.9 4.5 16 307-322 16-31 (33)
115 3ghg_A Fibrinogen alpha chain; 72.1 11 0.00036 39.4 8.3 12 308-319 141-152 (562)
116 1nkp_A C-MYC, MYC proto-oncoge 71.8 10 0.00035 30.0 6.5 15 282-296 71-85 (88)
117 3jsv_C NF-kappa-B essential mo 71.5 41 0.0014 27.6 10.5 72 233-322 7-78 (94)
118 4h22_A Leucine-rich repeat fli 71.4 18 0.00063 30.1 8.1 12 225-236 7-18 (103)
119 3efg_A Protein SLYX homolog; x 71.4 16 0.00055 28.6 7.4 25 252-276 10-34 (78)
120 1m1j_B Fibrinogen beta chain; 71.2 46 0.0016 33.9 12.6 21 305-325 175-195 (464)
121 3c3f_A Alpha/beta peptide with 70.6 7.3 0.00025 26.7 4.5 16 307-322 17-32 (34)
122 2efr_A General control protein 70.3 56 0.0019 28.7 11.7 9 309-317 102-110 (155)
123 2yy0_A C-MYC-binding protein; 70.3 8.2 0.00028 28.3 5.2 29 264-292 20-48 (53)
124 1go4_E MAD1 (mitotic arrest de 69.9 24 0.00082 29.2 8.5 10 310-319 73-82 (100)
125 1ses_A Seryl-tRNA synthetase; 69.8 40 0.0014 33.3 11.7 80 236-315 10-95 (421)
126 1dh3_A Transcription factor CR 69.6 6.7 0.00023 28.8 4.6 28 272-299 24-51 (55)
127 1t6f_A Geminin; coiled-coil, c 69.6 8.9 0.0003 26.7 4.8 29 263-291 7-35 (37)
128 3qne_A Seryl-tRNA synthetase, 69.3 22 0.00075 36.3 9.9 50 226-279 14-63 (485)
129 4emc_A Monopolin complex subun 69.3 23 0.0008 32.3 9.0 44 250-293 21-64 (190)
130 2oqq_A Transcription factor HY 69.2 7.8 0.00027 27.7 4.6 23 249-271 17-39 (42)
131 2oto_A M protein; helical coil 69.1 53 0.0018 27.9 11.8 31 252-282 53-83 (155)
132 1wle_A Seryl-tRNA synthetase; 68.8 34 0.0012 34.8 11.2 86 226-314 49-150 (501)
133 3jsv_C NF-kappa-B essential mo 68.7 39 0.0013 27.8 9.3 47 233-279 10-56 (94)
134 1kd8_B GABH BLL, GCN4 acid bas 67.9 11 0.00037 26.2 4.9 15 308-322 18-32 (36)
135 1deb_A APC protein, adenomatou 67.7 31 0.001 25.7 7.7 42 274-322 7-48 (54)
136 3mov_A Lamin-B1; LMNB1, B-type 67.3 48 0.0016 26.7 11.3 52 271-322 38-89 (95)
137 2r2v_A GCN4 leucine zipper; co 67.2 7.6 0.00026 26.7 4.1 27 250-276 2-28 (34)
138 3plt_A Sphingolipid long chain 66.8 36 0.0012 31.9 10.0 73 232-310 97-170 (234)
139 1jcd_A Major outer membrane li 66.4 30 0.001 25.5 7.5 24 251-274 6-29 (52)
140 1f5n_A Interferon-induced guan 65.9 1.1E+02 0.0038 31.7 14.4 72 245-320 508-582 (592)
141 3tnu_A Keratin, type I cytoske 65.9 57 0.002 27.1 11.1 25 252-276 48-72 (131)
142 1m1j_C Fibrinogen gamma chain; 65.7 94 0.0032 31.0 13.4 29 247-275 39-67 (409)
143 4dzn_A Coiled-coil peptide CC- 65.4 15 0.0005 24.6 5.1 13 308-320 19-31 (33)
144 1zme_C Proline utilization tra 65.0 4.7 0.00016 29.2 3.0 26 247-272 42-67 (70)
145 4h22_A Leucine-rich repeat fli 65.0 51 0.0017 27.5 9.5 16 308-323 68-83 (103)
146 4ath_A MITF, microphthalmia-as 64.9 25 0.00085 28.3 7.4 43 247-300 37-79 (83)
147 1nkp_B MAX protein, MYC proto- 64.5 10 0.00035 29.2 5.0 7 250-256 20-26 (83)
148 2hy6_A General control protein 64.3 14 0.00047 25.4 4.9 15 308-322 18-32 (34)
149 1joc_A EEA1, early endosomal a 64.2 39 0.0013 28.1 8.9 23 251-273 13-35 (125)
150 2efr_A General control protein 64.1 75 0.0026 27.9 12.0 60 235-294 56-115 (155)
151 1deq_A Fibrinogen (alpha chain 64.0 34 0.0011 34.4 9.7 48 249-296 113-160 (390)
152 2wq1_A General control protein 63.8 12 0.00042 25.5 4.5 28 288-322 4-31 (33)
153 3vkg_A Dynein heavy chain, cyt 63.4 37 0.0013 42.0 11.7 57 261-317 2033-2089(3245)
154 1am9_A Srebp-1A, protein (ster 63.3 11 0.00038 29.3 5.0 60 237-296 11-76 (82)
155 2xdj_A Uncharacterized protein 63.2 54 0.0019 25.9 10.0 36 252-287 23-58 (83)
156 3vkg_A Dynein heavy chain, cyt 62.9 1E+02 0.0035 38.3 15.3 51 226-276 2010-2062(3245)
157 1gk4_A Vimentin; intermediate 62.9 52 0.0018 25.6 12.0 51 272-322 28-78 (84)
158 2bni_A General control protein 62.9 11 0.00038 25.9 4.2 15 308-322 18-32 (34)
159 1dip_A Delta-sleep-inducing pe 62.7 7.8 0.00027 30.9 4.0 22 249-270 22-43 (78)
160 2v66_B Nuclear distribution pr 62.6 68 0.0023 26.9 14.6 49 251-299 37-85 (111)
161 2zxx_A Geminin; coiled-coil, c 62.6 38 0.0013 27.0 8.0 32 263-294 34-65 (79)
162 3m91_A Proteasome-associated A 62.1 34 0.0012 25.1 7.1 21 256-276 9-29 (51)
163 3s84_A Apolipoprotein A-IV; fo 61.8 87 0.003 29.3 11.8 83 237-322 164-248 (273)
164 3nmd_A CGMP dependent protein 61.7 31 0.0011 27.0 7.3 22 250-271 41-62 (72)
165 3mq9_A Bone marrow stromal ant 61.5 50 0.0017 31.8 10.4 14 307-320 452-465 (471)
166 2dgc_A Protein (GCN4); basic d 61.0 39 0.0013 25.3 7.5 23 274-296 34-56 (63)
167 3tnu_B Keratin, type II cytosk 60.8 70 0.0024 26.4 12.6 25 251-275 38-62 (129)
168 2e7s_A RAB guanine nucleotide 60.8 13 0.00045 32.3 5.4 54 251-305 34-87 (135)
169 2xnx_M M protein, M1-BC1; cell 60.7 84 0.0029 27.6 10.6 48 275-322 85-132 (146)
170 1p9i_A Cortexillin I/GCN4 hybr 60.4 8.5 0.00029 25.5 3.2 18 279-296 8-25 (31)
171 1nkp_A C-MYC, MYC proto-oncoge 60.0 26 0.0009 27.6 6.7 32 280-318 55-86 (88)
172 2oto_A M protein; helical coil 59.9 80 0.0027 26.8 12.9 44 254-297 34-77 (155)
173 4b4t_K 26S protease regulatory 59.8 13 0.00045 36.9 6.0 53 260-319 39-91 (428)
174 3trt_A Vimentin; cytoskeleton, 59.3 54 0.0018 24.6 8.4 7 312-318 56-62 (77)
175 2wuj_A Septum site-determining 58.9 9.6 0.00033 28.0 3.7 24 250-273 28-51 (57)
176 2dq0_A Seryl-tRNA synthetase; 58.8 62 0.0021 32.3 10.7 30 256-285 31-60 (455)
177 1a93_B MAX protein, coiled coi 58.7 15 0.0005 25.3 4.2 25 271-295 8-32 (34)
178 2lw1_A ABC transporter ATP-bin 58.5 63 0.0022 25.1 8.9 48 250-297 23-76 (89)
179 3q8t_A Beclin-1; autophagy, AT 58.3 70 0.0024 25.7 11.4 42 253-294 8-49 (96)
180 3u06_A Protein claret segregat 58.0 29 0.00099 34.4 8.1 33 264-296 4-36 (412)
181 1wlq_A Geminin; coiled-coil; 2 57.7 73 0.0025 25.6 8.9 29 263-291 38-66 (83)
182 1am9_A Srebp-1A, protein (ster 57.2 43 0.0015 25.9 7.4 13 250-262 51-63 (82)
183 3ghg_B Fibrinogen beta chain; 56.6 81 0.0028 32.2 11.2 29 299-327 164-192 (461)
184 3lay_A Zinc resistance-associa 56.3 47 0.0016 29.5 8.4 13 282-294 118-130 (175)
185 1kd8_A GABH AIV, GCN4 acid bas 56.2 22 0.00077 24.6 4.9 14 309-322 19-32 (36)
186 2w83_C C-JUN-amino-terminal ki 55.4 77 0.0026 25.2 10.2 48 251-298 11-58 (77)
187 2wvr_A Geminin; DNA replicatio 55.4 52 0.0018 30.5 8.7 33 263-295 115-147 (209)
188 3tq2_A KE1; parallel three hel 55.3 33 0.0011 23.3 5.5 32 265-296 3-34 (36)
189 1l8d_A DNA double-strand break 54.7 77 0.0026 25.0 11.5 14 308-321 88-101 (112)
190 1ik9_A DNA repair protein XRCC 54.6 1.1E+02 0.0038 27.8 10.8 38 253-290 136-173 (213)
191 2ocy_A RAB guanine nucleotide 54.0 1.2E+02 0.0039 26.8 14.0 35 289-323 113-147 (154)
192 1ic2_A Tropomyosin alpha chain 53.8 73 0.0025 24.4 10.5 30 253-282 24-53 (81)
193 1uii_A Geminin; human, DNA rep 53.6 44 0.0015 26.9 7.0 27 264-290 47-73 (83)
194 3ghg_C Fibrinogen gamma chain; 53.0 1.9E+02 0.0065 29.0 14.8 45 282-326 89-133 (411)
195 2nrj_A HBL B protein; enteroto 52.9 53 0.0018 31.6 8.9 75 245-322 119-193 (346)
196 2j5u_A MREC protein; bacterial 52.9 6.8 0.00023 36.3 2.5 14 280-293 46-59 (255)
197 2r2v_A GCN4 leucine zipper; co 52.7 28 0.00096 23.9 4.9 15 308-322 18-32 (34)
198 3q8t_A Beclin-1; autophagy, AT 52.7 88 0.003 25.1 13.7 57 243-299 19-75 (96)
199 1nlw_A MAD protein, MAX dimeri 52.6 29 0.001 27.0 5.8 9 284-292 68-76 (80)
200 1fmh_A General control protein 52.6 19 0.00066 24.1 4.0 27 273-299 4-30 (33)
201 2oa5_A Hypothetical protein BQ 52.4 7.7 0.00026 32.8 2.5 24 250-273 9-32 (110)
202 2er8_A Regulatory protein Leu3 52.1 7.7 0.00026 28.4 2.2 23 247-269 47-69 (72)
203 4ati_A MITF, microphthalmia-as 51.5 44 0.0015 27.7 7.0 18 281-298 95-112 (118)
204 3swk_A Vimentin; cytoskeleton, 50.8 69 0.0023 25.2 7.7 56 267-322 4-59 (86)
205 1deq_A Fibrinogen (alpha chain 50.4 1.2E+02 0.0042 30.3 11.1 6 196-201 27-32 (390)
206 3bas_A Myosin heavy chain, str 49.9 92 0.0031 24.5 12.4 46 252-297 38-83 (89)
207 3ol1_A Vimentin; structural ge 49.8 1.1E+02 0.0037 25.2 14.8 53 264-319 63-115 (119)
208 1uii_A Geminin; human, DNA rep 49.6 38 0.0013 27.3 6.0 35 282-323 44-78 (83)
209 2oa5_A Hypothetical protein BQ 49.6 9.1 0.00031 32.3 2.5 24 272-295 10-33 (110)
210 3mq7_A Bone marrow stromal ant 49.6 1.2E+02 0.0042 25.8 12.3 38 290-327 70-107 (121)
211 2xv5_A Lamin-A/C; structural p 49.5 89 0.0031 24.2 8.6 14 309-322 44-57 (74)
212 2xdj_A Uncharacterized protein 48.7 98 0.0034 24.4 10.4 22 275-296 25-46 (83)
213 3vp9_A General transcriptional 48.4 31 0.0011 28.1 5.5 37 283-323 49-86 (92)
214 1p9i_A Cortexillin I/GCN4 hybr 47.7 25 0.00087 23.2 3.9 25 252-276 2-26 (31)
215 3qh9_A Liprin-beta-2; coiled-c 47.4 92 0.0032 25.0 7.9 41 281-321 23-63 (81)
216 3he5_B Synzip2; heterodimeric 47.3 79 0.0027 22.9 7.3 20 267-286 7-26 (52)
217 3t98_B Nucleoporin NUP58/NUP45 47.1 1.1E+02 0.0038 24.6 9.5 34 289-322 49-82 (93)
218 1gk7_A Vimentin; intermediate 47.0 27 0.00093 24.1 4.2 25 270-294 13-37 (39)
219 2v66_B Nuclear distribution pr 46.9 1.3E+02 0.0043 25.2 10.8 25 274-298 39-63 (111)
220 2zvf_A Alanyl-tRNA synthetase; 46.9 51 0.0017 27.7 6.9 29 267-295 29-57 (171)
221 3uux_B Mitochondrial division 46.8 58 0.002 30.7 7.8 42 251-299 165-206 (242)
222 1ses_A Seryl-tRNA synthetase; 46.4 83 0.0028 31.0 9.3 59 253-314 39-98 (421)
223 4gkw_A Spindle assembly abnorm 46.1 91 0.0031 27.4 8.4 26 252-277 101-126 (167)
224 1wt6_A Myotonin-protein kinase 46.0 1E+02 0.0034 24.8 7.9 42 250-291 15-59 (81)
225 2b9c_A Striated-muscle alpha t 45.8 1.5E+02 0.005 25.6 12.2 63 228-296 37-99 (147)
226 2e7s_A RAB guanine nucleotide 45.6 1.5E+02 0.0051 25.6 10.4 17 304-320 116-132 (135)
227 4b4t_K 26S protease regulatory 45.5 32 0.0011 34.2 6.1 45 252-296 45-89 (428)
228 2dq3_A Seryl-tRNA synthetase; 45.4 35 0.0012 33.7 6.4 25 253-277 34-58 (425)
229 2xv5_A Lamin-A/C; structural p 45.3 1E+02 0.0036 23.8 8.8 41 243-283 6-46 (74)
230 3lss_A Seryl-tRNA synthetase; 45.1 2.4E+02 0.0084 28.6 12.6 31 249-279 37-67 (484)
231 1fxk_C Protein (prefoldin); ar 43.9 79 0.0027 25.7 7.4 20 254-273 100-119 (133)
232 1ik9_A DNA repair protein XRCC 43.1 1.9E+02 0.0066 26.2 12.6 27 250-276 140-166 (213)
233 4dzn_A Coiled-coil peptide CC- 42.9 50 0.0017 22.1 4.7 14 283-296 15-28 (33)
234 1fmh_B General control protein 42.7 57 0.0019 21.8 5.0 16 282-297 13-28 (33)
235 3q0x_A Centriole protein; cent 41.7 1.2E+02 0.0043 28.1 9.1 53 225-283 160-212 (228)
236 2zqm_A Prefoldin beta subunit 41.3 99 0.0034 24.3 7.4 22 241-262 26-47 (117)
237 3e98_A GAF domain of unknown f 41.1 80 0.0027 29.1 7.7 47 251-301 67-113 (252)
238 3trt_A Vimentin; cytoskeleton, 40.9 1.1E+02 0.0038 22.8 9.4 13 284-296 56-68 (77)
239 3plt_A Sphingolipid long chain 40.4 1.4E+02 0.0047 28.0 9.2 29 248-276 96-124 (234)
240 2wuj_A Septum site-determining 40.0 25 0.00086 25.7 3.4 24 275-298 32-55 (57)
241 3bas_A Myosin heavy chain, str 39.6 1.4E+02 0.0046 23.5 12.8 46 249-294 14-59 (89)
242 2ve7_A Kinetochore protein HEC 39.5 36 0.0012 32.4 5.3 23 257-279 186-208 (315)
243 3vem_A Helicase protein MOM1; 39.2 1.5E+02 0.0052 25.1 8.4 47 225-273 39-85 (115)
244 3htk_A Structural maintenance 39.2 1E+02 0.0035 21.9 8.6 23 254-276 10-32 (60)
245 1hlo_A Protein (transcription 39.0 26 0.00088 26.8 3.4 18 273-290 60-77 (80)
246 2lz1_A Nuclear factor erythroi 38.7 0.62 2.1E-05 38.1 -6.0 25 225-249 63-87 (90)
247 3qne_A Seryl-tRNA synthetase, 38.6 1.2E+02 0.0041 30.9 9.2 15 282-296 76-90 (485)
248 1zxa_A CGMP-dependent protein 38.6 32 0.0011 26.6 3.8 32 291-322 25-56 (67)
249 3oa7_A Head morphogenesis prot 38.5 1E+02 0.0034 28.5 7.8 43 258-300 32-74 (206)
250 3ra3_A P1C; coiled coil domain 38.2 52 0.0018 21.3 4.1 14 283-296 6-19 (28)
251 4b4t_M 26S protease regulatory 37.7 21 0.0007 35.6 3.4 7 311-317 66-72 (434)
252 1gk6_A Vimentin; intermediate 37.6 1.1E+02 0.0039 22.3 6.7 22 254-275 5-26 (59)
253 1ic2_A Tropomyosin alpha chain 37.1 1.4E+02 0.0047 22.9 11.9 48 252-299 9-56 (81)
254 3htk_A Structural maintenance 37.0 1.1E+02 0.0038 21.7 8.5 32 248-279 11-42 (60)
255 3bbp_D GRIP and coiled-coil do 36.8 32 0.0011 27.0 3.6 18 279-296 45-62 (71)
256 1a93_B MAX protein, coiled coi 36.1 54 0.0019 22.4 4.2 20 259-278 10-29 (34)
257 2wvr_A Geminin; DNA replicatio 35.6 1.5E+02 0.005 27.5 8.4 17 282-298 113-129 (209)
258 2aze_A Transcription factor DP 35.5 95 0.0033 27.5 6.9 28 236-263 13-40 (155)
259 3uux_B Mitochondrial division 35.5 2.9E+02 0.0099 26.1 11.9 50 249-298 177-226 (242)
260 2ve7_A Kinetochore protein HEC 35.4 52 0.0018 31.3 5.7 8 136-143 72-79 (315)
261 4ath_A MITF, microphthalmia-as 34.8 89 0.003 25.0 6.0 33 247-279 47-79 (83)
262 3q0x_A Centriole protein; cent 34.7 1.7E+02 0.0057 27.2 8.8 35 265-299 173-207 (228)
263 1cii_A Colicin IA; bacteriocin 33.0 4.4E+02 0.015 27.5 12.9 53 246-298 360-412 (602)
264 2dq3_A Seryl-tRNA synthetase; 33.0 36 0.0012 33.6 4.2 30 256-285 30-59 (425)
265 1wlq_A Geminin; coiled-coil; 2 32.7 1.2E+02 0.0041 24.4 6.5 34 283-323 37-70 (83)
266 2jo8_A Serine/threonine-protei 32.4 71 0.0024 23.6 4.7 18 309-326 25-42 (51)
267 4fla_A Regulation of nuclear P 32.4 2.5E+02 0.0084 24.3 9.2 62 249-310 86-147 (152)
268 2xu6_A MDV1 coiled coil; prote 32.3 99 0.0034 24.3 5.8 42 251-299 9-50 (72)
269 2akf_A Coronin-1A; coiled coil 32.0 60 0.002 21.7 3.8 24 253-276 3-26 (32)
270 3w03_C DNA repair protein XRCC 31.6 74 0.0025 28.8 5.7 27 249-275 145-171 (184)
271 2i1j_A Moesin; FERM, coiled-co 31.6 73 0.0025 32.7 6.4 25 251-275 337-361 (575)
272 3k29_A Putative uncharacterize 31.5 2.9E+02 0.0098 24.8 16.0 28 227-254 36-63 (169)
273 3fpp_A Macrolide-specific effl 31.5 2.9E+02 0.01 24.9 10.6 30 293-322 116-145 (341)
274 3ibp_A Chromosome partition pr 31.4 3.7E+02 0.013 26.1 11.8 13 307-319 92-104 (302)
275 3he4_A Synzip6; heterodimeric 30.9 78 0.0027 23.3 4.6 25 253-277 21-45 (56)
276 2ve7_C Kinetochore protein NUF 30.7 26 0.0009 32.5 2.7 30 246-275 145-174 (250)
277 2b5u_A Colicin E3; high resolu 30.5 4E+02 0.014 27.8 11.4 26 251-276 316-341 (551)
278 3kqg_A Langerin, C-type lectin 30.5 48 0.0017 27.4 4.1 15 309-323 27-41 (182)
279 3m0d_C TNF receptor-associated 30.4 1.7E+02 0.0057 21.8 8.9 29 247-275 4-32 (65)
280 2i1j_A Moesin; FERM, coiled-co 29.7 48 0.0017 34.0 4.7 33 291-323 419-451 (575)
281 4dk0_A Putative MACA; alpha-ha 29.7 2.9E+02 0.0097 25.3 9.6 6 225-230 63-68 (369)
282 1fxk_A Prefoldin; archaeal pro 29.6 1.4E+02 0.0046 23.1 6.4 19 243-261 23-41 (107)
283 1zxa_A CGMP-dependent protein 29.4 1E+02 0.0034 23.8 5.3 30 246-275 22-51 (67)
284 3e98_A GAF domain of unknown f 29.3 1.2E+02 0.0042 27.8 6.9 21 276-296 71-91 (252)
285 3ra3_B P2F; coiled coil domain 29.3 45 0.0015 21.6 2.8 14 283-296 6-19 (28)
286 1m1j_C Fibrinogen gamma chain; 27.9 4.6E+02 0.016 26.1 12.5 14 309-322 116-129 (409)
287 3lss_A Seryl-tRNA synthetase; 27.6 1.9E+02 0.0064 29.5 8.5 6 329-334 141-146 (484)
288 3mud_A DNA repair protein XRCC 27.5 2.2E+02 0.0074 25.6 7.9 27 250-276 129-155 (175)
289 3he4_A Synzip6; heterodimeric 27.3 32 0.0011 25.3 2.1 29 263-298 17-45 (56)
290 1m1j_A Fibrinogen alpha subuni 27.2 1.8E+02 0.006 30.0 8.1 47 249-295 111-157 (491)
291 1hwt_C Protein (heme activator 26.4 36 0.0012 25.1 2.3 22 247-268 56-77 (81)
292 2w6b_A RHO guanine nucleotide 26.1 1.5E+02 0.0051 22.3 5.5 19 277-295 17-35 (56)
293 3frt_A Charged multivesicular 26.0 3.7E+02 0.013 24.5 9.4 24 252-275 24-47 (218)
294 2p4w_A Transcriptional regulat 25.9 3E+02 0.01 24.1 8.6 14 308-321 168-181 (202)
295 2qyw_A Vesicle transport throu 25.4 2.6E+02 0.0088 22.3 7.9 31 245-275 45-75 (102)
296 1h7c_A Tubulin-specific chaper 25.3 2.8E+02 0.0095 22.6 9.6 35 288-322 49-83 (108)
297 1fmh_B General control protein 25.2 1.2E+02 0.0039 20.3 4.3 25 253-277 5-29 (33)
298 3a5t_A Transcription factor MA 25.0 6.6 0.00023 32.8 -2.2 12 308-319 82-93 (107)
299 3brv_B NF-kappa-B essential mo 24.8 2.5E+02 0.0085 21.9 9.1 31 258-298 10-40 (70)
300 3ljm_A Coil Ser L9C; de novo d 24.7 1.1E+02 0.0036 20.3 4.0 17 253-269 5-21 (31)
301 2jmh_A BLO T 5, mite allergen 24.7 2.7E+02 0.0092 23.7 7.6 9 285-293 49-57 (119)
302 2zdi_C Prefoldin subunit alpha 24.5 1.2E+02 0.0041 25.4 5.5 8 256-263 105-112 (151)
303 1m1j_B Fibrinogen beta chain; 24.3 5.7E+02 0.02 25.9 12.3 12 251-262 102-113 (464)
304 3gp4_A Transcriptional regulat 24.2 3.1E+02 0.011 22.7 9.2 10 224-233 43-52 (142)
305 1uix_A RHO-associated kinase; 24.0 2.6E+02 0.0088 21.8 9.2 31 254-284 2-32 (71)
306 4ani_A Protein GRPE; chaperone 23.7 4.2E+02 0.014 24.2 10.8 15 252-266 76-90 (213)
307 3lay_A Zinc resistance-associa 23.6 3.8E+02 0.013 23.6 11.1 11 308-318 116-126 (175)
308 1jcd_A Major outer membrane li 23.2 2.2E+02 0.0076 20.8 7.6 21 257-277 5-25 (52)
309 1ytz_I Troponin I; muscle, THI 23.2 1.8E+02 0.006 26.4 6.6 36 231-267 7-42 (182)
310 2xnx_M M protein, M1-BC1; cell 23.2 3.8E+02 0.013 23.5 9.8 10 254-263 38-47 (146)
311 4dk0_A Putative MACA; alpha-ha 23.2 4.3E+02 0.015 24.1 9.7 9 311-319 142-150 (369)
312 3thf_A Protein shroom; coiled- 23.1 4.3E+02 0.015 24.0 10.5 31 244-274 14-44 (190)
313 2gkw_A TNF receptor-associated 22.9 1.4E+02 0.0047 25.8 5.7 14 253-266 4-17 (192)
314 1zhc_A Hypothetical protein HP 22.8 1.7E+02 0.0059 22.4 5.6 9 311-319 57-65 (76)
315 1qvr_A CLPB protein; coiled co 22.7 2.8E+02 0.0096 29.1 9.0 22 247-268 399-420 (854)
316 1qsd_A Protein (beta-tubulin b 22.6 3.2E+02 0.011 22.3 9.0 36 286-321 45-80 (106)
317 4aj5_1 SKA3, spindle and kinet 22.5 3.3E+02 0.011 22.5 12.2 46 277-322 42-98 (101)
318 4akg_A Glutathione S-transfera 22.4 4.7E+02 0.016 32.1 11.7 71 252-322 2142-2222(2695)
319 1gk6_A Vimentin; intermediate 22.1 2.3E+02 0.008 20.6 8.1 12 310-321 40-51 (59)
320 3coq_A Regulatory protein GAL4 21.7 72 0.0025 23.7 3.3 23 248-270 44-66 (89)
321 1jad_A PLC-beta, phospholipase 21.6 5.1E+02 0.017 24.4 13.5 68 232-299 77-149 (251)
322 1fzc_C Fibrin; blood coagulati 21.4 48 0.0016 32.1 2.7 23 251-273 6-28 (319)
323 3mtu_A Tropomyosin alpha-1 cha 21.3 1.7E+02 0.006 22.4 5.4 26 252-277 5-30 (75)
324 3hhm_B NISH2 P85alpha; PI3KCA, 21.3 4.5E+02 0.015 25.6 9.6 57 264-320 199-255 (373)
325 1x79_B RAB GTPase binding effe 21.2 3.6E+02 0.012 22.5 11.8 7 290-296 44-50 (112)
326 3mq1_A Mite allergen DER P 5; 21.1 2.6E+02 0.0088 23.3 6.6 9 285-293 34-42 (103)
327 3w03_C DNA repair protein XRCC 20.9 2.1E+02 0.0071 25.8 6.6 32 247-278 150-181 (184)
328 2zvf_A Alanyl-tRNA synthetase; 20.7 88 0.003 26.2 3.9 27 253-279 29-55 (171)
329 3iv1_A Tumor susceptibility ge 20.4 3.2E+02 0.011 21.6 11.5 35 265-299 20-54 (78)
330 2j69_A Bacterial dynamin-like 20.1 4.8E+02 0.017 27.0 10.1 44 255-298 351-394 (695)
No 1
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=99.48 E-value=3.8e-14 Score=105.93 Aligned_cols=51 Identities=31% Similarity=0.485 Sum_probs=46.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQ 278 (363)
Q Consensus 228 KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq 278 (363)
||.+|+++||+||++||.||++|+++||.+|..|+.||..|..++..|.+.
T Consensus 1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999998888877643
No 2
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=99.28 E-value=1.6e-11 Score=93.36 Aligned_cols=53 Identities=28% Similarity=0.332 Sum_probs=48.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 227 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQR 279 (363)
Q Consensus 227 ~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~ 279 (363)
+||.+|+.+||+||++||.||++|+.+|+.+|..|+.+|..|..++..|..+.
T Consensus 1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999998887665443
No 3
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=99.24 E-value=2.9e-11 Score=91.11 Aligned_cols=59 Identities=31% Similarity=0.430 Sum_probs=51.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRI 293 (363)
Q Consensus 228 KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL 293 (363)
||.+|+.+||++|++||.||++|+++||.+|..|+.+|..|..++..|.. |+..|++.|
T Consensus 1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~-------e~~~Lk~~l 59 (61)
T 1t2k_D 1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRN-------EVAQLKQLL 59 (61)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH
T ss_pred CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHh
Confidence 68899999999999999999999999999999999999999988887754 455555544
No 4
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=99.13 E-value=1.2e-10 Score=88.17 Aligned_cols=51 Identities=37% Similarity=0.503 Sum_probs=46.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQ 278 (363)
Q Consensus 228 KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq 278 (363)
|+.+|..+||+||++||.||++|+.+||.+|..|+.+|..|..++..|..+
T Consensus 1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e 51 (62)
T 1jnm_A 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQ 51 (62)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466888999999999999999999999999999999999999888877543
No 5
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=99.06 E-value=2.8e-10 Score=87.04 Aligned_cols=52 Identities=40% Similarity=0.507 Sum_probs=42.2
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQ 278 (363)
Q Consensus 226 D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq 278 (363)
|+...|| .+||+||+|||.||++|+.+||.+|..|+.+|..|..++..|.++
T Consensus 8 d~~~~KR-~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~ 59 (63)
T 2dgc_A 8 DPAALKR-ARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKL 59 (63)
T ss_dssp ---CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333333 459999999999999999999999999999999998887777654
No 6
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=98.94 E-value=1.8e-09 Score=84.61 Aligned_cols=65 Identities=26% Similarity=0.206 Sum_probs=52.8
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALK 290 (363)
Q Consensus 226 D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LK 290 (363)
++...||...||.|++..|.||.+||.+||.+|..|+.++..|..++..|..++..|..||..||
T Consensus 6 ~~~~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~lr 70 (70)
T 1gd2_E 6 QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRILK 70 (70)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC-
T ss_pred cchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44457889999999999999999999999999999999888877666666666666666665553
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=98.84 E-value=6e-09 Score=79.47 Aligned_cols=59 Identities=27% Similarity=0.306 Sum_probs=45.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRI 293 (363)
Q Consensus 228 KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL 293 (363)
|+.+++.+||.+|+|+|.||++++++|+.++..|+.+|..|..++..|. .|+..||+-|
T Consensus 2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~-------~E~~~Lk~ll 60 (63)
T 1ci6_A 2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLA-------KEIQYLKDLI 60 (63)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 6788899999999999999999999999999999999999998887765 4555555543
No 8
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=98.49 E-value=8.6e-07 Score=70.62 Aligned_cols=55 Identities=20% Similarity=0.094 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 222 DTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 222 ~~~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
....|++-..|..+|.++|+|||.++++...+++.+|..|+.||..|..+|..|.
T Consensus 9 ~dk~d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~ 63 (78)
T 1gu4_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS 63 (78)
T ss_dssp -CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666678999999999999999999999999999999998887777654
No 9
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=98.45 E-value=1.2e-06 Score=71.06 Aligned_cols=55 Identities=20% Similarity=0.094 Sum_probs=46.4
Q ss_pred CCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 222 DTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 222 ~~~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
....|++-..|..+|.++|+|||.++++...+++.+|..|+.||..|..+|..|.
T Consensus 9 ~dk~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~ 63 (87)
T 1hjb_A 9 VDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLS 63 (87)
T ss_dssp -CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677777778999999999999999999999999999999888887776553
No 10
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=98.17 E-value=4.4e-08 Score=82.29 Aligned_cols=50 Identities=36% Similarity=0.433 Sum_probs=42.2
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAF 274 (363)
Q Consensus 225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~ 274 (363)
...|.+||.++||.+|+.||.||++.+++||.++..|+.+...|..++..
T Consensus 34 ~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~En~~ 83 (107)
T 3a5t_A 34 IQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENAS 83 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTSTTSH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999888877766666544433
No 11
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=98.16 E-value=3.8e-06 Score=68.69 Aligned_cols=69 Identities=30% Similarity=0.358 Sum_probs=52.4
Q ss_pred CCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 220 NGDTIIDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 220 ~~~~~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
+.+.....|.+||-++||-+|+-+|.||...+.+||..+..|..+...|..++..+. .|-..+|+++..
T Consensus 19 s~eev~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~-------~e~d~~k~k~~~ 87 (90)
T 2wt7_B 19 TKDEVIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA-------RERDAYKVKSEK 87 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence 334456788999999999999999999999999999998888877777766555543 344445555444
No 12
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=97.51 E-value=0.00021 Score=51.16 Aligned_cols=40 Identities=33% Similarity=0.488 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~ 294 (363)
|.|+.+||.+++.|+..|++|..++..|+ .||..|||-|.
T Consensus 2 KaYl~eLE~r~k~le~~naeLEervstLq-------~EN~mLRqvl~ 41 (42)
T 2oqq_A 2 SAYLSELENRVKDLENKNSELEERLSTLQ-------NENQMLRHILK 41 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHhc
Confidence 68999999999999999999988888764 78888888653
No 13
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=96.50 E-value=0.036 Score=44.62 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH----HHHHHHhh
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIE----RLRQVYHQ 323 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIe----rLRql~~q 323 (363)
.-++.||.+|+.+-..+.-|.-++..|.+++..|..+|.+++.....|.+ .++.|+.|.. |||.++|.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~-------en~qLk~E~~~wq~Rl~~LLgk 77 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELER-------ENNHLKEQQNGWQERLQALLGR 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence 45678888888877777777777777777666666666666665555543 4455555543 66777763
No 14
>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1
Probab=95.86 E-value=0.0032 Score=51.66 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=29.8
Q ss_pred CCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 037696 221 GDTIIDPKRVKRILANRQSAQRSRVRKLQYISELER 256 (363)
Q Consensus 221 ~~~~~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~ 256 (363)
.......|.+||..+||.+|+++|.||...+++|+.
T Consensus 55 ~~Ql~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~ 90 (92)
T 1skn_P 55 EYQRQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH 90 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence 334457889999999999999999999999988864
No 15
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=95.12 E-value=0.42 Score=40.01 Aligned_cols=74 Identities=19% Similarity=0.227 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLD--------------HQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIE 315 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~--------------qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIe 315 (363)
||.+|.++|..+..++..|..++..++ ..+..++.+-..||..+....-...--+...+.|+.||.
T Consensus 21 ~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555444443332 234455666677777777665554445667788999999
Q ss_pred HHHHHHhh
Q 037696 316 RLRQVYHQ 323 (363)
Q Consensus 316 rLRql~~q 323 (363)
-||..+.+
T Consensus 101 FLKk~hee 108 (119)
T 3ol1_A 101 FLKKLHEE 108 (119)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888763
No 16
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=94.69 E-value=0.52 Score=38.09 Aligned_cols=64 Identities=22% Similarity=0.332 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 256 RSVTTLQTEVSALSPRVAFLDHQRL-----ILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 256 ~kV~~Lq~ENs~Ls~ela~L~qq~~-----~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
.+|..|+.+|..|..++..+..+.. ....+-..||.+|..+..+..--+.+...|..++.+||.
T Consensus 23 dKVR~LEqqN~~Le~~i~~l~~~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 23 DKVRFLEQQNKILLAELEQLKGQGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677788888888777777765432 246777788888888877766666666667777777765
No 17
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=94.24 E-value=0.34 Score=41.77 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
++.++.|+.++..+..|...|..++..++.++..+..++..|+.++..|..
T Consensus 74 ~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~ 124 (138)
T 3hnw_A 74 KKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQK 124 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666666666666666666666666666666666665555544
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.68 E-value=2.3 Score=42.14 Aligned_cols=75 Identities=20% Similarity=0.119 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNI 326 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~~ 326 (363)
+.|++.++.++.+.+.+..++..++++...+..+-..|++++..++.....+....+++++|++.+++-+.+...
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555566666666555555555555555666666665555555556777777777666654433
No 19
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.64 E-value=1.3 Score=39.78 Aligned_cols=84 Identities=21% Similarity=0.325 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHH
Q 037696 238 QSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIF-------KDAHQEAL 310 (363)
Q Consensus 238 ESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~-------KeA~~E~L 310 (363)
++=.-.|.||.+ .||...+..++..+.+|..++..|......|..|...|..+|..=...... -.+-+..|
T Consensus 25 EsE~~~rlkK~~--tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L 102 (168)
T 3o0z_A 25 ESDTAVRLRKSH--TEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSL 102 (168)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667776 788888888888888888888888888888888888887777654322211 12345678
Q ss_pred HHHHHHHHHHHhh
Q 037696 311 KKEIERLRQVYHQ 323 (363)
Q Consensus 311 kkEIerLRql~~q 323 (363)
..|+.++|..+..
T Consensus 103 ~~El~~~k~~~~k 115 (168)
T 3o0z_A 103 QEEVKHLKHNLEK 115 (168)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888876653
No 20
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=93.22 E-value=1.5 Score=48.38 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 037696 282 LNVDNSALKQRIAALA 297 (363)
Q Consensus 282 L~~EN~~LKqrL~~L~ 297 (363)
|+.||..|++++..|+
T Consensus 1028 L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1028 LKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 21
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=93.03 E-value=0.39 Score=36.85 Aligned_cols=41 Identities=27% Similarity=0.274 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQ 291 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKq 291 (363)
+..-|.+|++|..-|..|+.++..++.....|..||..||.
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~ 62 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence 44568899999999999999999999999999999999984
No 22
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=92.89 E-value=0.58 Score=37.59 Aligned_cols=46 Identities=28% Similarity=0.348 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
|.-|..+|..|+.+|..|..++..+......|..||..|+++....
T Consensus 22 I~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~w 67 (81)
T 2jee_A 22 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGW 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555555555555555443
No 23
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.55 E-value=3.9 Score=36.73 Aligned_cols=81 Identities=19% Similarity=0.258 Sum_probs=51.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 037696 232 RILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALK 311 (363)
Q Consensus 232 R~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~Lk 311 (363)
.+.+-=+.=++.|.+--+.+.+|+.+|..|+.|...+..++..+ ..||+.|-.+|..|+.++-..+. .|.
T Consensus 73 ~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~-------~~e~r~L~Ekl~~lEKe~a~~ei---d~~ 142 (168)
T 3o0z_A 73 QLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKV-------EGERKEAQDMLNHSEKEKNNLEI---DLN 142 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhH---HHH
Confidence 44444455567777788888888888888888777776665554 57788888888887765433331 122
Q ss_pred HHHHHHHHHHh
Q 037696 312 KEIERLRQVYH 322 (363)
Q Consensus 312 kEIerLRql~~ 322 (363)
-|+..|.+.|.
T Consensus 143 ~eLKalQ~~~e 153 (168)
T 3o0z_A 143 YKLKSLQQRLE 153 (168)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 24
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=92.27 E-value=0.87 Score=33.95 Aligned_cols=46 Identities=22% Similarity=0.251 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
.+.|-++|+.|..||+.|+.++..=..++..|+.|-..+|.-+..|
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 4678899999999999999999888888888888877777655444
No 25
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=92.18 E-value=0.33 Score=38.77 Aligned_cols=45 Identities=13% Similarity=0.197 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALA 297 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~ 297 (363)
++..+++.++.+|..|..+|..|+++...-..+-..++..|..+.
T Consensus 10 ~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~ 54 (79)
T 3cvf_A 10 ETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAA 54 (79)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555554443
No 26
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=92.00 E-value=0.79 Score=40.64 Aligned_cols=16 Identities=19% Similarity=-0.066 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 037696 281 ILNVDNSALKQRIAAL 296 (363)
Q Consensus 281 ~L~~EN~~LKqrL~~L 296 (363)
.|..|...|..++..+
T Consensus 100 ~l~DEl~aLqlq~n~l 115 (152)
T 3a7p_A 100 RLNAALISGTIENNVL 115 (152)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 27
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=91.69 E-value=0.72 Score=36.76 Aligned_cols=69 Identities=20% Similarity=0.232 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFL--------------DHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERL 317 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L--------------~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerL 317 (363)
.+|..+|..+..++..|..++..+ ...+..++.+-..||.-+..+.-...=-++..|.|+.||.-|
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl~fL 82 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFL 82 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555544444433 233455666677777777777666656677888899999887
Q ss_pred HHH
Q 037696 318 RQV 320 (363)
Q Consensus 318 Rql 320 (363)
|..
T Consensus 83 kk~ 85 (86)
T 3swk_A 83 KKL 85 (86)
T ss_dssp TTC
T ss_pred hhc
Confidence 753
No 28
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=91.47 E-value=1.9 Score=34.64 Aligned_cols=63 Identities=27% Similarity=0.322 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEI 314 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEI 314 (363)
++.-...+.|-.|...|+-+|..|+.+....+-.-+.-|..|+.|.+.+..|++..+.|+.++
T Consensus 15 ee~~~~~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 15 EEKQRKAEELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334445556666777777777777777777777777778888888888888888888777776
No 29
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.62 E-value=3.1 Score=46.05 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 037696 254 LERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV 320 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql 320 (363)
++.++..++.+...|..++..+++++..+..|...|++++..+..++. .....|++|...||+.
T Consensus 975 ~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~---~kv~~L~~e~~~L~qq 1038 (1080)
T 2dfs_A 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---QLVSELKEQNTLLKTE 1038 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 334444444455555555555555555555555555555555443322 1223444555555543
No 30
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=90.49 E-value=4.3 Score=31.88 Aligned_cols=47 Identities=6% Similarity=0.150 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.++..+++.++.+|..|..+|..|+++...-..+-..++..|..+.+
T Consensus 3 ~~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e 49 (72)
T 3cve_A 3 HNSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLE 49 (72)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777778888888888888777777666666666666666544
No 31
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=90.34 E-value=2 Score=34.24 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 272 VAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
...+.++...++.+|..|+.+|..|.+...-.....+.++.|+.+|-..+.
T Consensus 8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld 58 (79)
T 3cvf_A 8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVGRAAQLLD 58 (79)
T ss_dssp --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444455566778888888888877665555567778888877766655
No 32
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=90.29 E-value=2.8 Score=33.75 Aligned_cols=39 Identities=26% Similarity=0.459 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 037696 272 VAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQ 324 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq 324 (363)
...+..+...|+.||..|+.+|.. |+.|+..||.++.+.
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~--------------L~~E~~~Lr~ll~~~ 76 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQ--------------LSRELSTLRNLFKQL 76 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHC
Confidence 344556666777888888887664 567788888877753
No 33
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=90.22 E-value=0.72 Score=36.35 Aligned_cols=45 Identities=16% Similarity=0.045 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~ 294 (363)
+|.+||.++..++.-..+|...|..-.++...|..+.+.|..++.
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~ 59 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLG 59 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666665555555444444444444444333
No 34
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=89.56 E-value=3.1 Score=45.90 Aligned_cols=44 Identities=7% Similarity=0.186 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~ 294 (363)
+.+|+.++..|+.+...+...+..++.+...|..+...|+.++.
T Consensus 859 l~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~ 902 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555554444444444444444444444444444443
No 35
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=89.31 E-value=2.2 Score=33.75 Aligned_cols=39 Identities=28% Similarity=0.513 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 271 RVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 271 ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
+...+.+....|..||..|+.+|.. |.+|+..||.++.+
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~--------------L~~E~~~Lr~ll~q 75 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQ--------------LSRELSTLRNLFKQ 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHH
Confidence 3344556666777788888876654 46777777776653
No 36
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=89.17 E-value=2 Score=33.77 Aligned_cols=48 Identities=13% Similarity=0.242 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 275 LDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 275 L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
+.+++..++.+|..|+.+|..|.+...-.....+.++.|+.+|-..+.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld 52 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILD 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566677788888888888877655444456777777777666554
No 37
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=88.99 E-value=3.3 Score=34.37 Aligned_cols=66 Identities=26% Similarity=0.320 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQR--------------IAALAQDKIFKDAHQEALKKEIE 315 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqr--------------L~~L~qe~~~KeA~~E~LkkEIe 315 (363)
-+..|..+|..|+.||..|..++..|+-++ |+..|+.. .+.+..+. ..-..+.|+.||+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L-----e~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~--~~~~~e~Lq~E~e 85 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQL-----ERRALQGDYDQSRTKVLHMSLNPTSVARQR--LREDHSQLQAECE 85 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHSSCCSCCCTTTEEEEEESSCHHHHHHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhccccCCccCeeeeecCChHHHHHHH--HHHHHHHHHHHHH
Confidence 456777777777777777777776665332 33222221 11222111 1235689999999
Q ss_pred HHHHHHh
Q 037696 316 RLRQVYH 322 (363)
Q Consensus 316 rLRql~~ 322 (363)
+||..+.
T Consensus 86 rLr~~v~ 92 (100)
T 1go4_E 86 RLRGLLR 92 (100)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9998876
No 38
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.38 E-value=9.3 Score=34.75 Aligned_cols=22 Identities=14% Similarity=0.116 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037696 246 RKLQYISELERSVTTLQTEVSA 267 (363)
Q Consensus 246 RKkqyIeELE~kV~~Lq~ENs~ 267 (363)
++++.+.+|+.....++..-.+
T Consensus 21 ~~~q~~~~le~El~EFqesSrE 42 (189)
T 2v71_A 21 KYKQSFQEARDELVEFQEGSRE 42 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666777666665554444
No 39
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=88.24 E-value=4.1 Score=34.99 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 260 TLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 260 ~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.++.++..|..++..+......|..|...++.++..+.+
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~ 110 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAK 110 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444433
No 40
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=88.21 E-value=9.2 Score=30.98 Aligned_cols=59 Identities=8% Similarity=0.098 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 240 AQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 240 AqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
-+.-...-....+.++.+++.++..+..+..+|..|.+++..|..+-..+..+|.....
T Consensus 14 lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~ 72 (101)
T 3u1c_A 14 LKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSED 72 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566677777777777777777777777777777777776666666665544
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=88.14 E-value=4.1 Score=40.33 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 267 ALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 267 ~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
.|...+..+.++...+..++..+++++...
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEADAK 535 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhhhh
Confidence 344444444455555555555555555433
No 42
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=88.08 E-value=2.6 Score=35.25 Aligned_cols=15 Identities=33% Similarity=0.574 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 037696 254 LERSVTTLQTEVSAL 268 (363)
Q Consensus 254 LE~kV~~Lq~ENs~L 268 (363)
||.++..|+.||..|
T Consensus 42 LE~~~s~le~e~~rl 56 (104)
T 3s9g_A 42 LEKSLSRMEDENNRL 56 (104)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 43
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.00 E-value=10 Score=31.30 Aligned_cols=57 Identities=19% Similarity=0.267 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 037696 248 LQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDA 305 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA 305 (363)
+..|..|+.++.....+...|..++..-...+...+.++..|.+.|..|+..+ |-+|
T Consensus 11 re~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL-FeEA 67 (97)
T 2eqb_B 11 KEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL-FDEA 67 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 35577888888889999999999999988999999999999999999997753 4444
No 44
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=87.62 E-value=0.61 Score=31.89 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
|..||.+|..|-.+|+.|..+|..|.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 56799999999999998888887764
No 45
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=87.58 E-value=0.71 Score=31.70 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
++..||.+|..|-.+|+.|..++..|.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 567899999998888888888777664
No 46
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=87.54 E-value=2.2 Score=30.74 Aligned_cols=16 Identities=38% Similarity=0.378 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 037696 306 HQEALKKEIERLRQVY 321 (363)
Q Consensus 306 ~~E~LkkEIerLRql~ 321 (363)
+..-|.+||..||...
T Consensus 32 liaylekeianlrkki 47 (49)
T 3he5_A 32 LIAYLEKEIANLRKKI 47 (49)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3456678888877643
No 47
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.10 E-value=11 Score=30.57 Aligned_cols=79 Identities=9% Similarity=0.111 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 037696 237 RQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIE 315 (363)
Q Consensus 237 RESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIe 315 (363)
.+.|..--..-..-+..++.+...++.++..|..++..|...+..+...-...+..|..-.....--++.+..|.+.|+
T Consensus 18 ~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 18 KENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445556666677777777777777777777766666666666666666655544444555555555554
No 48
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=86.91 E-value=4.1 Score=30.04 Aligned_cols=26 Identities=23% Similarity=0.219 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 271 RVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 271 ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
.+..|+.+...|..+|..|+.+|..|
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L 48 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666667777777766554
No 49
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=86.85 E-value=3.8 Score=45.29 Aligned_cols=19 Identities=16% Similarity=0.312 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037696 278 QRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 278 q~~~L~~EN~~LKqrL~~L 296 (363)
++..|..+...|+.++..+
T Consensus 914 ~l~~l~~~~~~Le~~l~el 932 (1184)
T 1i84_S 914 MRVRLAAKKQELEEILHEM 932 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443
No 50
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.65 E-value=12 Score=31.24 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 274 FLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVY 321 (363)
Q Consensus 274 ~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~ 321 (363)
.++.....|+.+-..+|..++..-++++.---.--.|.-||...|.++
T Consensus 81 ~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~Ld~EIatYRkLL 128 (131)
T 3tnu_A 81 QIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTRLEQEIATYRRLL 128 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 333444455556666666655544443211111124567777766654
No 51
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=86.52 E-value=8.5 Score=34.98 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
.+||..+..++..+..|..++..|
T Consensus 45 ~ELE~eL~~~Ek~~~~L~~~~~~L 68 (189)
T 2v71_A 45 AELEAQLVQAEQRNRDLQADNQRL 68 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 52
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=86.15 E-value=3.7 Score=29.72 Aligned_cols=43 Identities=30% Similarity=0.393 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
+||.+|..|+.-...|..+++.|.-++ ..-...||+||..|+.
T Consensus 2 dlEekv~~Le~~ld~LqTr~ArLlae~---~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLDTLQTRFARLLAEY---NATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 567777777777777777776665443 4456789999988865
No 53
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=86.01 E-value=13 Score=30.30 Aligned_cols=63 Identities=22% Similarity=0.213 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
..|..+=..|......-..+...+ .+...|+.|+..|..++..|.. +++.+.+|+..+++.|.
T Consensus 24 ~~lKq~RRtlKNRgyAq~CR~Kr~-~q~~~LE~e~~~L~~e~~~L~~-------e~~~~~~e~d~~k~k~~ 86 (90)
T 2wt7_B 24 IRLKQKRRTLKNRGYAQSCRYKRV-QQKHHLENEKTQLIQQVEQLKQ-------EVSRLARERDAYKVKSE 86 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 333334444444444445555555 3457888888888888888866 45778889998888876
No 54
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=85.77 E-value=0.73 Score=43.71 Aligned_cols=38 Identities=32% Similarity=0.375 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 275 LDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 275 L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
|+.++..|...|..|+..|..+.+ +.+.|++||++|++
T Consensus 59 L~~ql~~L~arNe~L~~~Lk~ar~-------El~~LkeElerL~s 96 (251)
T 3m9b_A 59 LEARIDSLAARNSKLMETLKEARQ-------QLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHH-------HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhcC
Confidence 333333444444444444444433 33566777777764
No 55
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=85.76 E-value=12 Score=29.98 Aligned_cols=77 Identities=6% Similarity=0.033 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696 241 QRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERL 317 (363)
Q Consensus 241 qRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerL 317 (363)
+.-...-....+.|+.++..++..+..+..++..|.+++..|..+-..+..+|......+...+-.......||..|
T Consensus 15 k~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasL 91 (101)
T 3u59_A 15 KLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASL 91 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556667778888888888888888888888888877777777777777665543333332223334455444
No 56
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=85.39 E-value=16 Score=30.88 Aligned_cols=74 Identities=18% Similarity=0.173 Sum_probs=43.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 037696 230 VKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEA 309 (363)
Q Consensus 230 ~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~ 309 (363)
+.-+..|=.+|...=..|+.-|++|+.++..+.... .....|++|+.-...+...-.+-.|.
T Consensus 26 i~~L~~~L~~AEeaL~~Kq~~idelk~ei~q~~~~l------------------E~I~vLkaQv~IY~~DF~aERadREk 87 (110)
T 2v4h_A 26 LEDLRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM------------------ETVPVLKAQADIYKADFQAERHAREK 87 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHccchhhHHH
Confidence 344455567888888888888888888777655522 12334445555444444444444455
Q ss_pred HHHHHHHHHHHH
Q 037696 310 LKKEIERLRQVY 321 (363)
Q Consensus 310 LkkEIerLRql~ 321 (363)
+..|+++|..-+
T Consensus 88 l~~eKe~L~~ql 99 (110)
T 2v4h_A 88 LVEKKEYLQEQL 99 (110)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH
Confidence 555555555433
No 57
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=85.37 E-value=1.5 Score=30.48 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDH 277 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~q 277 (363)
+|..||.+|+.|-.++..|..+|..|..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4678999999999888888888877653
No 58
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=85.35 E-value=11 Score=33.46 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 256 RSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 256 ~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
..+..|+.|...|..++..++.+...|..||..|=+|...
T Consensus 96 K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~ 135 (152)
T 3a7p_A 96 KNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLK 135 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677777777777777777777777777666544
No 59
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=84.91 E-value=1.2 Score=30.60 Aligned_cols=27 Identities=7% Similarity=0.146 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
++..||.+|+.|-.+|..|..+|..|.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 567899999999998888888887764
No 60
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.47 E-value=15 Score=30.54 Aligned_cols=41 Identities=24% Similarity=0.140 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 037696 280 LILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV 320 (363)
Q Consensus 280 ~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql 320 (363)
..|+.+-..+|..++...++++.---.--.|.-||...|.+
T Consensus 85 ~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Ld~EIatYRkL 125 (129)
T 3tnu_B 85 AELEEALQKAKQDMARLLREYQELMNTKLALDVEIATYRKL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444445544443333221111112345566555544
No 61
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=84.14 E-value=25 Score=32.10 Aligned_cols=44 Identities=11% Similarity=0.102 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
.|..++..+..+...|..++..+..+...+..+-..++.++..+
T Consensus 94 aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~ 137 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLEL 137 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444433333333333333333333333
No 62
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=83.86 E-value=3.6 Score=32.60 Aligned_cols=45 Identities=27% Similarity=0.301 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
.+||.+|..|+.-...|..+++.|.-++ ..-...||+||..|+..
T Consensus 3 ~dlEEKv~~LE~sld~LQTrfARLLaEy---~ssQ~KLKqRit~LE~~ 47 (74)
T 3swf_A 3 MGLEEKVTRMESSVDLLQTRFARILAEY---ESMQQKLKQRLTKVEKF 47 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4577777777777777777777665443 44567899999998774
No 63
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=83.80 E-value=7.4 Score=31.02 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
..+-++|..|-.||.+|...-.. |..-...|-.++.+|..+ .+.|+.|+..+++...
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNa-------Lnvvk~DLI~rvdELt~E-------~e~l~~El~s~~~~~~ 61 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNA-------LNIVKNDLIAKVDELTCE-------KDVLQGELEAVKQAKL 61 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHH
Confidence 34556777777777777654333 333444555556665552 3445555555554443
No 64
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=83.57 E-value=2.4 Score=32.07 Aligned_cols=15 Identities=40% Similarity=0.727 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhhhhh
Q 037696 312 KEIERLRQVYHQQNI 326 (363)
Q Consensus 312 kEIerLRql~~qq~~ 326 (363)
.||+||+.++.+.+.
T Consensus 39 QEieRL~~LLkqHgl 53 (58)
T 3a2a_A 39 QEIERLNKLLRQHGL 53 (58)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcCC
Confidence 566677766665543
No 65
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=83.55 E-value=0.11 Score=42.68 Aligned_cols=27 Identities=30% Similarity=0.325 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHhHHHHHHHHHHHHHH
Q 037696 224 IIDPKRVKRILANRQSAQRSRVRKLQY 250 (363)
Q Consensus 224 ~~D~KR~RR~LsNRESAqRSR~RKkqy 250 (363)
...-|.+||..+||.+||++|.||+.-
T Consensus 62 l~lIrdiRRRgKNKvAAqnCRKRKld~ 88 (91)
T 2kz5_A 62 LALVRDIRRRGKNKVAAQNYRKRKLET 88 (91)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCCCCC
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345788999999999999999999753
No 66
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=83.32 E-value=4.4 Score=29.80 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHHH
Q 037696 254 LERSVTTLQTEVSAL 268 (363)
Q Consensus 254 LE~kV~~Lq~ENs~L 268 (363)
|..++..|...|..|
T Consensus 14 l~~~l~~L~~rN~rL 28 (51)
T 3m91_A 14 LEARIDSLAARNSKL 28 (51)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 67
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=83.13 E-value=2 Score=28.82 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQ 278 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq 278 (363)
+..||.+|.+.+.||-.|..+++.|+++
T Consensus 3 vaqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 3 VAQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 4567777777777777777777666554
No 68
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=82.79 E-value=1.5 Score=30.38 Aligned_cols=28 Identities=32% Similarity=0.419 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDH 277 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~q 277 (363)
+|..||.+|..|-.++..|..+|..|+.
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4567899999988888888888777653
No 69
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=82.76 E-value=15 Score=31.08 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 244 RVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 244 R~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
+..-+.||..|+.+|..|+.|...-+ +.......||..|+.+++.+..
T Consensus 35 ~~E~q~~v~ql~~~i~~Le~eL~e~r-------~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 35 KTESQRVVLQLKGHVSELEADLAEQQ-------HLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555444433 3344455666677766666533
No 70
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=82.40 E-value=5.7 Score=29.16 Aligned_cols=14 Identities=43% Similarity=0.653 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhh
Q 037696 310 LKKEIERLRQVYHQ 323 (363)
Q Consensus 310 LkkEIerLRql~~q 323 (363)
+..||+||+.++.+
T Consensus 30 ~eQEieRL~~LLkq 43 (48)
T 3vmx_A 30 KEQEIERLNKLLKQ 43 (48)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666666554
No 71
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=82.37 E-value=1.8 Score=29.60 Aligned_cols=26 Identities=8% Similarity=0.173 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
+..||.+|+.|-.+|..|..+|..|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56789999988888888888877664
No 72
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=82.31 E-value=2.8 Score=32.51 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 266 SALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 266 s~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
..|..+|..|+.....|..||..|+.+|..|..+
T Consensus 32 ~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 32 KALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555666778888888888777553
No 73
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=82.23 E-value=1.7 Score=33.72 Aligned_cols=18 Identities=33% Similarity=0.289 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037696 279 RLILNVDNSALKQRIAAL 296 (363)
Q Consensus 279 ~~~L~~EN~~LKqrL~~L 296 (363)
...|..+|..|+++|..|
T Consensus 63 ~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 63 IDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333344555555555543
No 74
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=82.06 E-value=1.7 Score=29.88 Aligned_cols=27 Identities=26% Similarity=0.262 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
++..||.+|+.|-.+|..|..++..|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 467899999999998888888887765
No 75
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=81.98 E-value=14 Score=27.51 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 272 VAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+..|+.+...|..+|..|+.+|..|
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666677777777766544
No 76
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=81.84 E-value=1.9 Score=29.46 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 037696 306 HQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 306 ~~E~LkkEIerLRql~~q 323 (363)
.+..|+.||.|||.++++
T Consensus 15 ~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 15 KNWNLENEVARLKKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HhHHHHHHHHHHHHHhhc
Confidence 345677888888877764
No 77
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=81.75 E-value=5.4 Score=29.26 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 255 ERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRI 293 (363)
Q Consensus 255 E~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL 293 (363)
|.++..|..-|..|..++..|++.+..++.|+..|+.=|
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL 41 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL 41 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 577888899999999999999999999998887776533
No 78
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=81.69 E-value=21 Score=31.53 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDA 305 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA 305 (363)
.+..|+.++.....+...|..++..-...+...+.+...+.+.|..|+..+ |-+|
T Consensus 45 ~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasL-FeEA 99 (154)
T 2ocy_A 45 DYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL-FDEA 99 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 456677777778888888888888888888888888999999998887643 4443
No 79
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=81.58 E-value=1.8 Score=29.76 Aligned_cols=27 Identities=7% Similarity=0.207 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
++..||.+|+.|-.+++.|..+|..|.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 567899999998888888888877664
No 80
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=81.41 E-value=1.8 Score=29.71 Aligned_cols=27 Identities=7% Similarity=0.187 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
+|..||.+|+.|-.+|..|..+|..|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 457899999999998888888887764
No 81
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=81.08 E-value=19 Score=30.41 Aligned_cols=67 Identities=21% Similarity=0.271 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLR 318 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLR 318 (363)
.-|+.|-+.|..|+.++..|..+-... ...|......|...|..-....+.--..++.|+.|++.|+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~---v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~ 81 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRV---VLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELR 81 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666664433322 2233333333444333332221111223445555555443
No 82
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=81.03 E-value=2.1 Score=29.22 Aligned_cols=26 Identities=12% Similarity=0.156 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
|..||.+|+.|-.++..|..+|..|.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56799999999998888888887764
No 83
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=81.00 E-value=6.2 Score=31.20 Aligned_cols=44 Identities=16% Similarity=0.329 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 255 ERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 255 E~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
|.++..|+....-=..-.+.|..+.-.|..||..|.++|..|.+
T Consensus 31 e~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~l~~ 74 (75)
T 3a7o_A 31 EQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSDLKK 74 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHHHhc
Confidence 34444454444444455566777788889999999999988754
No 84
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=80.84 E-value=8 Score=27.85 Aligned_cols=43 Identities=19% Similarity=0.298 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQR 292 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqr 292 (363)
.+..||.+|..|+.||..|..+.-.-..-..-|+.|-..||.+
T Consensus 4 lvaqlenevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 3567888888888888887766443333333444444444433
No 85
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=80.12 E-value=5.1 Score=39.47 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 037696 306 HQEALKKEIERLR 318 (363)
Q Consensus 306 ~~E~LkkEIerLR 318 (363)
+...|..+|+.||
T Consensus 46 ~rr~l~n~~~elk 58 (403)
T 4etp_A 46 VRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC
Confidence 3344555565554
No 86
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=79.95 E-value=5.7 Score=29.41 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 272 VAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+..|+.....|..+|..|+.+|..|
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555556666666655544
No 87
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=79.75 E-value=6.4 Score=29.47 Aligned_cols=29 Identities=31% Similarity=0.298 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 270 PRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 270 ~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.+...|..+...|..+|..|+.+|..|..
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~ 51 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777888888887766533
No 88
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=79.63 E-value=5 Score=30.35 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 255 ERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQ 291 (363)
Q Consensus 255 E~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKq 291 (363)
|+++..|...|-.|..+++.|+.+|...+.|+..|..
T Consensus 10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777788888888888888888888777776654
No 89
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=79.59 E-value=2.9 Score=28.68 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 037696 306 HQEALKKEIERLRQVYH 322 (363)
Q Consensus 306 ~~E~LkkEIerLRql~~ 322 (363)
.++.|+.|+.|||.+++
T Consensus 16 ~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 16 KNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hhhhHHHHHHHHHHHHh
Confidence 34567778888887765
No 90
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=79.55 E-value=11 Score=30.31 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 272 VAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
++....+...|+.+|+.|..++..+.+... .........+|..||..+.
T Consensus 18 lAsyIdKVR~LEqqN~~Le~~i~~l~~~~~--~~~~~~ye~~i~~Lr~~i~ 66 (93)
T 3s4r_A 18 FANLIDKVRFLEQQNKILLAELEQLKGQGK--SRLGDLYEEEMRELRRQVD 66 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCcHHHHHHHHHHHHHHHH
Confidence 333334444455555555555555543321 1122334566666665444
No 91
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=79.35 E-value=10 Score=34.71 Aligned_cols=44 Identities=20% Similarity=0.210 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK 300 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~ 300 (363)
.++.-..-|..|+.||..|..++.... .|+..|+.+|+++..+.
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~~k~-------~ei~~L~~ql~sl~~~~ 57 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLDTKA-------TEIKQLQKQIDSLNAQV 57 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhh
Confidence 344444556777777777776666554 45555555555555443
No 92
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=79.25 E-value=12 Score=30.83 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhh
Q 037696 305 AHQEALKKEIERLRQVYHQQNIKKM 329 (363)
Q Consensus 305 A~~E~LkkEIerLRql~~qq~~~~~ 329 (363)
.....+..|++.|-..+=.+-.+||
T Consensus 47 ~~~~~ie~ElEeLTasLFeEAN~MV 71 (97)
T 2eqb_B 47 EEADKLNKEVEDLTASLFDEANNMV 71 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666555544444444
No 93
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=79.12 E-value=5.1 Score=39.75 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 037696 260 TLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLR 318 (363)
Q Consensus 260 ~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLR 318 (363)
.|+.|..+|..++..|++++..+..|+..|+++|.. .+.+...|..+|+.|+
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-------~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ-------SNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhC
Confidence 344444444444444554444555555555554433 2233344555555544
No 94
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=78.73 E-value=41 Score=34.29 Aligned_cols=91 Identities=14% Similarity=0.136 Sum_probs=44.4
Q ss_pred CCCCCHHHHHHHHHhHHHH-HHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 037696 222 DTIIDPKRVKRILANRQSA-QRSRVRKL-------QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNV--------- 284 (363)
Q Consensus 222 ~~~~D~KR~RR~LsNRESA-qRSR~RKk-------qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~--------- 284 (363)
.+++|.|-+| .|.+.- +..+.|+. ..|-+|..+...|+.+...|..+...+.++...+..
T Consensus 38 ~pmlD~~~ir---~n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~ 114 (501)
T 1wle_A 38 LPLLDMESLC---AYPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQ 114 (501)
T ss_dssp CCCCCHHHHH---HSHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGG
T ss_pred CCccCHHHHH---hCHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccc
Confidence 3678988776 366664 34444432 344455555555555555555544444444443321
Q ss_pred --HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 037696 285 --DNSALKQRIAALAQDKIFKDAHQEALKKEIE 315 (363)
Q Consensus 285 --EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIe 315 (363)
+-.+|+.++..|..+....++....+.+++.
T Consensus 115 ~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~ 147 (501)
T 1wle_A 115 DPQYQSLRARGREIRKQLTLLYPKEAQLEEQFY 147 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234555555554443333333344444443
No 95
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=78.22 E-value=1 Score=41.82 Aligned_cols=42 Identities=29% Similarity=0.326 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 037696 280 LILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQN 325 (363)
Q Consensus 280 ~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~ 325 (363)
..|..||.+||+++..|+... ...+.|+.|.++||.++....
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~----~~~~~l~~En~rLr~lL~~~~ 63 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLE----SEVADLKKENKDLKESLDITD 63 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHH----HHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhcCcc
Confidence 345667777777777776542 234678899999999988543
No 96
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=77.89 E-value=15 Score=30.66 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 275 LDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 275 L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
|+.++..|+.||..|+..-........-.+++.+.|+.|-++|++
T Consensus 42 LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~ 86 (104)
T 3s9g_A 42 LEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLT 86 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 333444444555555554333222222223344556666665554
No 97
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=77.79 E-value=4.4 Score=29.75 Aligned_cols=18 Identities=11% Similarity=0.266 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037696 257 SVTTLQTEVSALSPRVAF 274 (363)
Q Consensus 257 kV~~Lq~ENs~Ls~ela~ 274 (363)
.|..|+.||.+|..++..
T Consensus 20 d~eaLk~E~~eLk~k~~~ 37 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEA 37 (53)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444444444444333
No 98
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=77.58 E-value=26 Score=28.09 Aligned_cols=78 Identities=10% Similarity=0.100 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 037696 238 QSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIE 315 (363)
Q Consensus 238 ESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIe 315 (363)
+.|..--..-..-+..++.+...+..++..|..++..|...+..+...-..+...|..-.....--++....|.+.|+
T Consensus 19 e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriq 96 (101)
T 3u59_A 19 ENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333344455555555566666666666666666655555555555555555554444444555556665554
No 99
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=77.42 E-value=12 Score=32.03 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 279 RLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 279 ~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
...|..|...|+++|.. ..++.|.|+++.+.|..
T Consensus 73 vqeLqgEI~~Lnq~Lq~-------a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 73 VEELEGEITTLNHKLQD-------ASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHhhchhhhh
Confidence 44455555555554443 34455666666655544
No 100
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=76.65 E-value=2.5 Score=39.35 Aligned_cols=61 Identities=15% Similarity=0.091 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
-++||.+|+|+-=.-=.|-|.-|..-++++-.+.+.+.. +...|..||++|+++|..|..+
T Consensus 117 P~~~Rt~~iLSalINF~~FRE~~~~~~~e~~~~~e~~~~--------------~i~ql~~En~~le~~Ie~Lk~e 177 (250)
T 2ve7_C 117 PKAKRTSRFLSGIINFIHFREACRETYMEFLWQYKSSAD--------------KMQQLNAAHQEALMKLERLEKE 177 (250)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH--------------HHHHHHHHHHHHHHSCC-----
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999877666666666666655444444333333 2333344566666666666554
No 101
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=76.64 E-value=4.7 Score=31.55 Aligned_cols=29 Identities=21% Similarity=0.163 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 248 LQYISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
..||..|+.+...|..|...|..++..|.
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~~L~ 74 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLK 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777776666655554444433
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=76.58 E-value=28 Score=33.74 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 272 VAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
.....++...|..||..|+..+.++
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
T 3oja_A 437 WDMYQHKETQLAEENARLKKLNGEA 461 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHhhhhhhhhhhh
Confidence 3333344444444555555544444
No 103
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=76.47 E-value=13 Score=28.15 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=23.3
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 234 LANRQSAQRSRVRKLQYISELERSVTTLQTEVSAL 268 (363)
Q Consensus 234 LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~L 268 (363)
-+||.+++++|.|=++.++-...-...-..||..|
T Consensus 7 yknr~asrk~rakfkn~lqh~r~vaaaks~en~rl 41 (63)
T 2c9l_Y 7 YKNRVAARKSRAKFKQLLQHYREVAAAKSSENDRL 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHH
Confidence 57999999999998876665544333334444444
No 104
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=76.26 E-value=57 Score=31.42 Aligned_cols=28 Identities=21% Similarity=0.359 Sum_probs=14.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 037696 291 QRIAALAQDKIFKDAHQEALKKEIERLR 318 (363)
Q Consensus 291 qrL~~L~qe~~~KeA~~E~LkkEIerLR 318 (363)
.+|++|+.+..-.....+.+..||++||
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 443 KKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3555555544444444455555555554
No 105
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=74.52 E-value=5.5 Score=34.50 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 282 LNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 282 L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
+...|..|+-++..++....+.......=++.+..|+.+|.+
T Consensus 53 ~~~~~d~L~lQ~esmeaalkmEr~~~~eEKrkLAqLQ~AY~~ 94 (130)
T 3cl3_D 53 HSVQVDQLRMQGQSVEAALRMERQAASEEKRKLAQLQVAYHQ 94 (130)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888887777555555567777888888874
No 106
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=74.19 E-value=2.5 Score=33.68 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 264 EVSALSPRVAFLDHQRLILNVDNSALKQ 291 (363)
Q Consensus 264 ENs~Ls~ela~L~qq~~~L~~EN~~LKq 291 (363)
|+..|+.++..|..++..|+.||..||.
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555666665554
No 107
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=73.27 E-value=4 Score=38.66 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
+.+|+.++..|...|..|.. .+..+..|...||.+|..|.+
T Consensus 56 l~eL~~ql~~L~arNe~L~~-------~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 56 IHQLEARIDSLAARNSKLME-------TLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHTTTHHHHHH-------HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcC
Confidence 33444444444444444444 444445555556666655543
No 108
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=73.26 E-value=8 Score=30.43 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=18.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 290 KQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 290 KqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
..+|..|+.+..-|+++...|+.|+..+|.
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344555555555566666677777766654
No 109
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=73.03 E-value=35 Score=27.41 Aligned_cols=57 Identities=16% Similarity=0.195 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 236 NRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 236 NRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
|-+||-.+-.|-|+-|.+ ++...+..|-.+..++...+.++..|..|-..|+.++..
T Consensus 14 eLQSALeaEIqAKQ~i~E---ELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSR---EMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888877777765543 334445566666666666655555555554444444444
No 110
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=72.86 E-value=5.3 Score=27.43 Aligned_cols=17 Identities=12% Similarity=0.391 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 037696 307 QEALKKEIERLRQVYHQ 323 (363)
Q Consensus 307 ~E~LkkEIerLRql~~q 323 (363)
+..|..||.|||.++++
T Consensus 17 n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 17 LYHIENELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHcc
Confidence 35667777787777664
No 111
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=72.80 E-value=43 Score=33.46 Aligned_cols=27 Identities=15% Similarity=0.105 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQR 279 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~ 279 (363)
+|..+-..|+.+...|..+...+.++.
T Consensus 35 ~l~~~~r~~~~~~~~l~~~~n~~sk~i 61 (455)
T 2dq0_A 35 KLDTEWRTKLKEINRLRHERNKIAVEI 61 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333
No 112
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=72.73 E-value=42 Score=28.27 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 258 VTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 258 V~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
|..|++++.-...-...=......+..|...|..+|..|
T Consensus 64 I~vLkaQv~IY~~DF~aERadREkl~~eKe~L~~ql~~L 102 (110)
T 2v4h_A 64 VPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQL 102 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccchhhHHHHHhHHHHHHHHHHHH
Confidence 444444444333333333333444555555555555544
No 113
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=72.62 E-value=33 Score=26.96 Aligned_cols=52 Identities=12% Similarity=0.010 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 271 RVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 271 ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
++..++.....|+.+-..+|..++...++.+.---.--.|..||...|.++-
T Consensus 29 ~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYRkLLE 80 (86)
T 1x8y_A 29 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKLLE 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 3334444444445555555555544433332111111245677777766654
No 114
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=72.43 E-value=6.3 Score=26.88 Aligned_cols=16 Identities=6% Similarity=0.264 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 037696 307 QEALKKEIERLRQVYH 322 (363)
Q Consensus 307 ~E~LkkEIerLRql~~ 322 (363)
+..|..|+.|||.+++
T Consensus 16 ~~~Le~EV~RLk~lL~ 31 (33)
T 3c3g_A 16 XYHXENXLARIKXLLX 31 (33)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHc
Confidence 3566777777777765
No 115
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=72.13 E-value=11 Score=39.40 Aligned_cols=12 Identities=25% Similarity=0.318 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 037696 308 EALKKEIERLRQ 319 (363)
Q Consensus 308 E~LkkEIerLRq 319 (363)
+.+..||+||=.
T Consensus 141 edq~~kIQRLEv 152 (562)
T 3ghg_A 141 RAQLVDMKRLEV 152 (562)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 116
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=71.81 E-value=10 Score=29.99 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 037696 282 LNVDNSALKQRIAAL 296 (363)
Q Consensus 282 L~~EN~~LKqrL~~L 296 (363)
|..+|..|+.+|..|
T Consensus 71 L~~~n~~L~~rl~~L 85 (88)
T 1nkp_A 71 LRKRREQLKHKLEQL 85 (88)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 344555555555544
No 117
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=71.46 E-value=41 Score=27.62 Aligned_cols=72 Identities=18% Similarity=0.167 Sum_probs=41.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 037696 233 ILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKK 312 (363)
Q Consensus 233 ~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~Lkk 312 (363)
+..|-.+|-..=..|+..|++|...+..++... .....|++++.....+...-.+-.|.+..
T Consensus 7 L~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~------------------E~i~vLk~Qv~IY~~DF~aERadREkl~~ 68 (94)
T 3jsv_C 7 LRQQLQQAEEALVAKQELIDKLKEEAEQHKIVM------------------ETVPVLKAQADIYKADFQAERHAREKLVE 68 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334556677777777777777777666554322 23445556665555555555555566666
Q ss_pred HHHHHHHHHh
Q 037696 313 EIERLRQVYH 322 (363)
Q Consensus 313 EIerLRql~~ 322 (363)
|.++|..-+.
T Consensus 69 eKe~L~~ql~ 78 (94)
T 3jsv_C 69 KKEYLQEQLE 78 (94)
T ss_dssp TTSHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666555443
No 118
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=71.39 E-value=18 Score=30.13 Aligned_cols=12 Identities=25% Similarity=0.468 Sum_probs=6.0
Q ss_pred CCHHHHHHHHHh
Q 037696 225 IDPKRVKRILAN 236 (363)
Q Consensus 225 ~D~KR~RR~LsN 236 (363)
+++|=.|=|++|
T Consensus 7 vEEKyrKAMVsn 18 (103)
T 4h22_A 7 VEEKYKKAMVSN 18 (103)
T ss_dssp -CCTHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555554
No 119
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=71.38 E-value=16 Score=28.59 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
.+||.++..|+...+.+...|..|.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn 34 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELS 34 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666665555555444443
No 120
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=71.16 E-value=46 Score=33.91 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 037696 305 AHQEALKKEIERLRQVYHQQN 325 (363)
Q Consensus 305 A~~E~LkkEIerLRql~~qq~ 325 (363)
...+.|+..|+.|...+.++.
T Consensus 175 ~~~~~l~~ki~~l~~~~~~~~ 195 (464)
T 1m1j_B 175 AVIDSLHKKIQKLENAIATQT 195 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344667777777777665543
No 121
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=70.60 E-value=7.3 Score=26.72 Aligned_cols=16 Identities=13% Similarity=0.181 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 037696 307 QEALKKEIERLRQVYH 322 (363)
Q Consensus 307 ~E~LkkEIerLRql~~ 322 (363)
+..|..||.|||.+++
T Consensus 17 ~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 17 LYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHh
Confidence 3566777777777765
No 122
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=70.30 E-value=56 Score=28.69 Aligned_cols=9 Identities=44% Similarity=0.689 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 037696 309 ALKKEIERL 317 (363)
Q Consensus 309 ~LkkEIerL 317 (363)
.|.++|.+|
T Consensus 102 kLEk~id~l 110 (155)
T 2efr_A 102 KLEKSIDDL 110 (155)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444443
No 123
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=70.27 E-value=8.2 Score=28.32 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 264 EVSALSPRVAFLDHQRLILNVDNSALKQR 292 (363)
Q Consensus 264 ENs~Ls~ela~L~qq~~~L~~EN~~LKqr 292 (363)
++..|..++..|+.++..|..++.+|+.+
T Consensus 20 d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 20 EIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443
No 124
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=69.90 E-value=24 Score=29.18 Aligned_cols=10 Identities=20% Similarity=0.514 Sum_probs=4.9
Q ss_pred HHHHHHHHHH
Q 037696 310 LKKEIERLRQ 319 (363)
Q Consensus 310 LkkEIerLRq 319 (363)
.+.+++.|+.
T Consensus 73 ~~~~~e~Lq~ 82 (100)
T 1go4_E 73 LREDHSQLQA 82 (100)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455555544
No 125
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=69.78 E-value=40 Score=33.26 Aligned_cols=80 Identities=16% Similarity=0.163 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 037696 236 NRQSAQRSRVRK-----LQYISELERSVTTLQTEVSALSPRVAFLDHQRLI-LNVDNSALKQRIAALAQDKIFKDAHQEA 309 (363)
Q Consensus 236 NRESAqRSR~RK-----kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~-L~~EN~~LKqrL~~L~qe~~~KeA~~E~ 309 (363)
|-+.-+++-.+| ...|.+|..+-..++.+...|..+...+.++... -..+-.+|+.++..|..+....++....
T Consensus 10 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 89 (421)
T 1ses_A 10 EPEVFHRAIREKGVALDLEALLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALRE 89 (421)
T ss_dssp CHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444333 3455555555555555555555555555443321 0012234455555544433222333334
Q ss_pred HHHHHH
Q 037696 310 LKKEIE 315 (363)
Q Consensus 310 LkkEIe 315 (363)
+..++.
T Consensus 90 ~~~~~~ 95 (421)
T 1ses_A 90 KEARLE 95 (421)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 126
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=69.61 E-value=6.7 Score=28.77 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 272 VAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
+..|+.+...|..||..|+.++..|...
T Consensus 24 ~~~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 24 VKSLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666777888888888777654
No 127
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=69.57 E-value=8.9 Score=26.70 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 263 TEVSALSPRVAFLDHQRLILNVDNSALKQ 291 (363)
Q Consensus 263 ~ENs~Ls~ela~L~qq~~~L~~EN~~LKq 291 (363)
.||.+|...+..-+++...|..||.+|+.
T Consensus 7 ~ENekLhk~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 7 KENEKLHKEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence 57888888888888888888888887753
No 128
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=69.33 E-value=22 Score=36.28 Aligned_cols=50 Identities=12% Similarity=0.160 Sum_probs=22.0
Q ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 226 DPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQR 279 (363)
Q Consensus 226 D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~ 279 (363)
++-.++..+++|-..- --...|.+|..+-..|+.+...|..+...+.++.
T Consensus 14 n~~~v~~~~~~R~~~~----~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i 63 (485)
T 3qne_A 14 DPEIIKASQKKRGDSV----ELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEI 63 (485)
T ss_dssp CHHHHHHHHHHHTCCS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555665555553110 0023344444444444444444444444444443
No 129
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=69.27 E-value=23 Score=32.33 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRI 293 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL 293 (363)
-|..|-.++..|..++.....++..|+++...|...-+.+..++
T Consensus 21 LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~ 64 (190)
T 4emc_A 21 LVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQT 64 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 45666666666666666666666666666665555544444444
No 130
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=69.25 E-value=7.8 Score=27.72 Aligned_cols=23 Identities=39% Similarity=0.343 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPR 271 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~e 271 (363)
....|||.+|..|+.||.-|+.-
T Consensus 17 ~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 17 NKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHH
Confidence 45678888888888888887654
No 131
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=69.10 E-value=53 Score=27.92 Aligned_cols=31 Identities=19% Similarity=0.288 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLIL 282 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L 282 (363)
.+|+.++..|...|..|..++..+.+++..|
T Consensus 53 ~eL~~~~~~Le~~n~~L~~~lke~~~~~~~l 83 (155)
T 2oto_A 53 EELEKAKQALEDQRKDLETKLKELQQDYDLA 83 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666665555555555333
No 132
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=68.82 E-value=34 Score=34.84 Aligned_cols=86 Identities=17% Similarity=0.207 Sum_probs=47.3
Q ss_pred CHHHHHHHHHhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Q 037696 226 DPKRVKRILANRQSA-----QRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDH-----------QRLILNVDNSAL 289 (363)
Q Consensus 226 D~KR~RR~LsNRESA-----qRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~q-----------q~~~L~~EN~~L 289 (363)
++-.+++.+++|-.. -..=..--+...+|..++..|+.+...++.++..+.. ....|..|-+.|
T Consensus 49 n~~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l 128 (501)
T 1wle_A 49 YPEDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEEEKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARGREI 128 (501)
T ss_dssp SHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccccccccccHHHHHHHHHHH
Confidence 566666666666431 0111111112233445555666666666666665432 445788888889
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHH
Q 037696 290 KQRIAALAQDKIFKDAHQEALKKEI 314 (363)
Q Consensus 290 KqrL~~L~qe~~~KeA~~E~LkkEI 314 (363)
+.+|..|+.+..-. .+.|...+
T Consensus 129 ~~~i~~l~~~~~~~---~~~l~~~l 150 (501)
T 1wle_A 129 RKQLTLLYPKEAQL---EEQFYLRA 150 (501)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHH
Confidence 99998887754322 24555666
No 133
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=68.67 E-value=39 Score=27.79 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=24.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 233 ILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQR 279 (363)
Q Consensus 233 ~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~ 279 (363)
.|.-=+-|-.++.....-|.+.-.+.......+..|..++......+
T Consensus 10 ~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF 56 (94)
T 3jsv_C 10 QLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADF 56 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555555555555555555555555555554443
No 134
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=67.89 E-value=11 Score=26.21 Aligned_cols=15 Identities=27% Similarity=0.362 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHh
Q 037696 308 EALKKEIERLRQVYH 322 (363)
Q Consensus 308 E~LkkEIerLRql~~ 322 (363)
..|+.||.|||.+++
T Consensus 18 ~~Le~eV~RLk~ll~ 32 (36)
T 1kd8_B 18 WHLKNKVARLKKKNA 32 (36)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 455666666666655
No 135
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=67.66 E-value=31 Score=25.71 Aligned_cols=42 Identities=24% Similarity=0.308 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 274 FLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 274 ~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
.|-+|...|..||..||.+|..-..+. ..|+.|.-.|+.++-
T Consensus 7 QL~~QVe~Lk~ENshLrrEL~dNS~~l-------skLE~ets~mKevlk 48 (54)
T 1deb_A 7 QLLKQVEALKMENSNLRQELEDNSNHL-------TKLETEASNMKEVLK 48 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHH-------HHHHhhhhhHHHHHH
Confidence 345566667889999999988766542 344445445554443
No 136
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=67.28 E-value=48 Score=26.73 Aligned_cols=52 Identities=12% Similarity=0.004 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 271 RVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 271 ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
++..++.....|+.+-..+|+.++...++.+----.--.|..||...|.++.
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIatYrkLLE 89 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEISAYRKLLE 89 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444555555666666666555443332111111246677777776653
No 137
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=67.22 E-value=7.6 Score=26.66 Aligned_cols=27 Identities=4% Similarity=0.116 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
++..||.+|+.|-.++..|..++..|.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 467788888888888888887777664
No 138
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=66.79 E-value=36 Score=31.88 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=48.7
Q ss_pred HHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 037696 232 RILANRQSA-QRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEAL 310 (363)
Q Consensus 232 R~LsNRESA-qRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~L 310 (363)
.-|+|||.. +.+|.||..-..++. .|..... -+.++..|++++...+.|+-.-..+|..+..+ .+|+++.-.+
T Consensus 97 K~IR~~E~svqp~R~~R~~l~~~I~----kLk~k~P-~s~kl~~LeqELvraEae~lvaEAqL~n~kR~-~lKEa~~~~f 170 (234)
T 3plt_A 97 KSIRNIEASVQPSRDRKEKITDEIA----HLKYKDP-QSTKIPVLEQELVRAEAESLVAEAQLSNITRE-KLKAAYSYMF 170 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCT-TCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH----HHhccCC-CCchHHHHHHHHHHHHHHhhHHHHHHHHhHHH-HHHHHHHHHH
Confidence 346788765 666666666555553 3332211 24678888888888999998888899988775 4677654433
No 139
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=66.36 E-value=30 Score=25.46 Aligned_cols=24 Identities=8% Similarity=0.034 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAF 274 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~ 274 (363)
|++|..+|..|..++..|+..+..
T Consensus 6 i~~Lss~V~~L~~kVdqLssdV~a 29 (52)
T 1jcd_A 6 ADQASSDAQTANAKADQASNDANA 29 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444444444433
No 140
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=65.88 E-value=1.1e+02 Score=31.68 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHH
Q 037696 245 VRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKD---AHQEALKKEIERLRQV 320 (363)
Q Consensus 245 ~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~Ke---A~~E~LkkEIerLRql 320 (363)
++.++.-.-+|.+-..++.....|..++..= +...+...++.|..+|.+-+. .+++ ...+.|.+||+.|+..
T Consensus 508 ~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~--~~~~~~e~~~~~~~~~~~~~~--~~~~g~~~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 508 EMQRKNEQMMEQKERSYQEHLKQLTEKMEND--RVQLLKEQERTLALKLQEQEQ--LLKEGFQKESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333445555555666666665544432 223344445556666654221 2222 2446788888888764
No 141
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=65.87 E-value=57 Score=27.11 Aligned_cols=25 Identities=12% Similarity=0.093 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
..|+.++..|...+..|...+..++
T Consensus 48 q~L~~el~~l~~~~~sLE~~l~e~e 72 (131)
T 3tnu_A 48 QNLEIELQSQLSMKASLENSLEETK 72 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444444444444444443
No 142
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=65.72 E-value=94 Score=31.02 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
..+.|+.+-.+|..+..+...|...+...
T Consensus 39 ~l~~LE~~l~elsn~ts~v~~Lvk~iq~~ 67 (409)
T 1m1j_C 39 ELLEIEGLLQQATNSTGSIEYLIQHIKTI 67 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555566666666666665554443
No 143
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=65.42 E-value=15 Score=24.65 Aligned_cols=13 Identities=54% Similarity=0.498 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 037696 308 EALKKEIERLRQV 320 (363)
Q Consensus 308 E~LkkEIerLRql 320 (363)
.+|+=||..|++-
T Consensus 19 aalkfeiaalkqg 31 (33)
T 4dzn_A 19 AALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 3455555555543
No 144
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=65.01 E-value=4.7 Score=29.20 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRV 272 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~el 272 (363)
+..|++.|+.+|..|+..+..|...+
T Consensus 42 ~~~~~~~L~~ri~~Le~~l~~l~~~l 67 (70)
T 1zme_C 42 STKYLQQLQKDLNDKTEENNRLKALL 67 (70)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999998888776544
No 145
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=64.97 E-value=51 Score=27.50 Aligned_cols=16 Identities=13% Similarity=0.299 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 037696 308 EALKKEIERLRQVYHQ 323 (363)
Q Consensus 308 E~LkkEIerLRql~~q 323 (363)
..|+.++..||..+-+
T Consensus 68 ~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 68 SILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555544443
No 146
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=64.95 E-value=25 Score=28.25 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK 300 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~ 300 (363)
-..||..|...+..+..+ +.+...|+..|+.|..+|++|+-++
T Consensus 37 svdYI~~Lq~e~~r~~e~-----------e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 37 SVDYIRKLQREQQRAKDL-----------ENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHHHHTHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 367887776666554443 3334567788889999888886654
No 147
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=64.49 E-value=10 Score=29.22 Aligned_cols=7 Identities=14% Similarity=0.154 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 037696 250 YISELER 256 (363)
Q Consensus 250 yIeELE~ 256 (363)
.+.+|..
T Consensus 20 ~f~~Lr~ 26 (83)
T 1nkp_B 20 SFHSLRD 26 (83)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 3344443
No 148
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=64.25 E-value=14 Score=25.40 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHh
Q 037696 308 EALKKEIERLRQVYH 322 (363)
Q Consensus 308 E~LkkEIerLRql~~ 322 (363)
..|..||.|||.+++
T Consensus 18 ~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 18 YHLANAVARLAKAVG 32 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 456677777777765
No 149
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=64.16 E-value=39 Score=28.08 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVA 273 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela 273 (363)
....|.+|..|+.++.+|..++.
T Consensus 13 ~~~~e~e~~~l~~~~~el~~~l~ 35 (125)
T 1joc_A 13 CLKGEGEIEKLQTKVLELQRKLD 35 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 150
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=64.13 E-value=75 Score=27.88 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=29.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 235 ANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 235 sNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~ 294 (363)
.|..|---+=.+=-+..+.+|.+++.|+........+..+..+....|..+...|..+|.
T Consensus 56 ~nlKsLE~seekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~ 115 (155)
T 2efr_A 56 NNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELY 115 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334445555566665555555555555555555555555444444443
No 151
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=64.00 E-value=34 Score=34.35 Aligned_cols=48 Identities=21% Similarity=0.186 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
+|.++||+++..|+..+..-...|..|+..+..+..+-+.|...|...
T Consensus 113 e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 113 QINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888887776655577777777777777766666666443
No 152
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=63.83 E-value=12 Score=25.50 Aligned_cols=28 Identities=18% Similarity=0.162 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 288 ALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 288 ~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
+|..++.+|.. .+..|..||.|||.+++
T Consensus 4 QLEdKVEell~-------~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 4 QLEDKIEENTS-------KIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHH-------hhHHHHHHHHHHHHHhc
Confidence 34455555543 23456778888887765
No 153
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=63.39 E-value=37 Score=42.05 Aligned_cols=57 Identities=16% Similarity=0.137 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037696 261 LQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERL 317 (363)
Q Consensus 261 Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerL 317 (363)
++.+..+|..+++.|+.++..+..|...|+.++...+....--+.+...|..|-.|-
T Consensus 2033 ~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW 2089 (3245)
T 3vkg_A 2033 IVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRW 2089 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccH
Confidence 344444455555555555555556666666666655554444444555555554443
No 154
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=63.28 E-value=11 Score=29.29 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 237 RQSAQRSRVRKLQYISELERSVTTL---QTEVSALSPRV---AFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 237 RESAqRSR~RKkqyIeELE~kV~~L---q~ENs~Ls~el---a~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
-.+-++-|.+=..++.+|..-|-.. .....-|..-+ ..|+.+...|..|+..|+.++...
T Consensus 11 ~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~~~~~~ 76 (82)
T 1am9_A 11 NAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRTAVHKS 76 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444555555466677776655322 11222233332 334555556666666666666553
No 155
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=63.23 E-value=54 Score=25.94 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNS 287 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~ 287 (363)
-+|-.++..|+.|+..|+.+++.+..+...|....+
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555544444433333
No 156
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=62.95 E-value=1e+02 Score=38.35 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=27.9
Q ss_pred CHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 226 DPKRVK--RILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 226 D~KR~R--R~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
.|||.+ ...++-..|+..-..+++.|.+||.+++.|+.+-..+..+.+.|+
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~ 2062 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIK 2062 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666654 344444455555555666677777777666665555444444433
No 157
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=62.92 E-value=52 Score=25.59 Aligned_cols=51 Identities=18% Similarity=0.066 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 272 VAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
+..++.....|+.+-..+|..++...++.+.---.--.|..||...|.++-
T Consensus 28 ~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRkLLE 78 (84)
T 1gk4_A 28 AANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLE 78 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc
Confidence 344445555566666666666655544432211122356678877777654
No 158
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=62.91 E-value=11 Score=25.87 Aligned_cols=15 Identities=13% Similarity=0.421 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHh
Q 037696 308 EALKKEIERLRQVYH 322 (363)
Q Consensus 308 E~LkkEIerLRql~~ 322 (363)
..|..|+.|||.+++
T Consensus 18 ~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 18 HHICNELARIKKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhc
Confidence 456677777777665
No 159
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=62.70 E-value=7.8 Score=30.88 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSP 270 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ 270 (363)
..|.||+.++.+|+.||.-|+.
T Consensus 22 e~I~EL~e~~~qLE~EN~~Lk~ 43 (78)
T 1dip_A 22 EQIRELVEKNSQLERENTLLKT 43 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777666666666653
No 160
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=62.64 E-value=68 Score=26.86 Aligned_cols=49 Identities=18% Similarity=0.130 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
+..|+..+..|+..+..|...+..|++.+..|+...+..-.-|..++..
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k 85 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQR 85 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHH
Confidence 5667777777888888888888888777777777777776666666554
No 161
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=62.57 E-value=38 Score=26.97 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 263 TEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 263 ~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~ 294 (363)
.||..|..+|..++..+..|..||..|+.=+.
T Consensus 34 ~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~ 65 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEIARLRKENKDLAEVAE 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888888888888888888865333
No 162
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=62.14 E-value=34 Score=25.07 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037696 256 RSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 256 ~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
.++..|+.++..|..++..|.
T Consensus 9 ~r~~~l~~~l~~L~~rN~rL~ 29 (51)
T 3m91_A 9 RDIHQLEARIDSLAARNSKLM 29 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444333
No 163
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=61.79 E-value=87 Score=29.28 Aligned_cols=83 Identities=20% Similarity=0.283 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHH
Q 037696 237 RQSAQRSRVRKLQYISELERSVTTLQTEVS-ALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKI-FKDAHQEALKKEI 314 (363)
Q Consensus 237 RESAqRSR~RKkqyIeELE~kV~~Lq~ENs-~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~-~KeA~~E~LkkEI 314 (363)
...|...|.|=..++++|..++.-+-.+.. .|...+..|.. .|..-+..|++++.++.+... .-+.++..+...+
T Consensus 164 ~~~a~~L~~~l~~~~eeLr~~L~p~ae~lr~~l~~~~e~l~~---~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~ 240 (273)
T 3s84_A 164 KKNAEELKARISASAEELRQRLAPLAEDVRGNLRGNTEGLQK---SLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQM 240 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHH---HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 355666666666777777777665433322 12222233332 334445778888888876652 2556778888888
Q ss_pred HHHHHHHh
Q 037696 315 ERLRQVYH 322 (363)
Q Consensus 315 erLRql~~ 322 (363)
+.||+.++
T Consensus 241 e~l~~~l~ 248 (273)
T 3s84_A 241 EQLRQKLG 248 (273)
T ss_dssp HHHHHHHS
T ss_pred HHHHHHhC
Confidence 89998775
No 164
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.71 E-value=31 Score=27.04 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPR 271 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~e 271 (363)
.|.+||.++.....++..|..+
T Consensus 41 ~I~eLEk~L~ekd~eI~~Lqse 62 (72)
T 3nmd_A 41 LIDELELELDQKDELIQMLQNE 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333
No 165
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=61.48 E-value=50 Score=31.80 Aligned_cols=14 Identities=7% Similarity=0.143 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHH
Q 037696 307 QEALKKEIERLRQV 320 (363)
Q Consensus 307 ~E~LkkEIerLRql 320 (363)
.-.|..+|+.++.-
T Consensus 452 ~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 452 ITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555543
No 166
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=61.02 E-value=39 Score=25.28 Aligned_cols=23 Identities=26% Similarity=0.224 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037696 274 FLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 274 ~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
.|+.+...|..+|..|+.++..|
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~L 56 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444555444444444
No 167
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=60.80 E-value=70 Score=26.43 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
|.+|.+.|+.|+.|...|..+...|
T Consensus 38 i~elrr~iq~L~~el~~l~~~~~~L 62 (129)
T 3tnu_B 38 ISEMNRMIQRLRAEIDNVKKQCANL 62 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3444444444444444443333333
No 168
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=60.78 E-value=13 Score=32.28 Aligned_cols=54 Identities=20% Similarity=0.332 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDA 305 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA 305 (363)
+..|...+..+..+...|..++..-...+...+.++..|.+.|..|+.. .|-+|
T Consensus 34 l~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTas-LFeEA 87 (135)
T 2e7s_A 34 YNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTAS-LFDEA 87 (135)
T ss_dssp HHHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 4455555555777777777777777778888888999999999998775 34444
No 169
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=60.70 E-value=84 Score=27.64 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 275 LDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 275 L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
+...+..|..+...|...++.|..+.++.+|....|.++++..|.+..
T Consensus 85 ~ea~la~l~~~~~~LeAE~aKLeEekQIseASRqgLrRDLeASReAKK 132 (146)
T 2xnx_M 85 AKLELDQLSSEKEQLTIEKAKLEEEKQISDASRQSLRRDLDASREAKK 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGTTTC-------------------
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 344445555566667777788888888888888888888877776654
No 170
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=60.41 E-value=8.5 Score=25.47 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037696 279 RLILNVDNSALKQRIAAL 296 (363)
Q Consensus 279 ~~~L~~EN~~LKqrL~~L 296 (363)
...|+.||++||.++.+|
T Consensus 8 lasleaenkqlkakveel 25 (31)
T 1p9i_A 8 LASLEAENKQLKAKVEEL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345667777777777665
No 171
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=59.98 E-value=26 Score=27.61 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 037696 280 LILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLR 318 (363)
Q Consensus 280 ~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLR 318 (363)
..|..++..|...+..|.. .++.|+.+|+.|+
T Consensus 55 ~~L~~~~~~l~~~~~~L~~-------~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 55 LSVQAEEQKLISEEDLLRK-------RREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhh
Confidence 3455555555555554433 3455666665553
No 172
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=59.90 E-value=80 Score=26.78 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 254 LERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALA 297 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~ 297 (363)
|..+...|..+...+......|..+...|...|..|+.++..+.
T Consensus 34 Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le~~n~~L~~~lke~~ 77 (155)
T 2oto_A 34 LKARLENAMEVAGRDFKRAEELEKAKQALEDQRKDLETKLKELQ 77 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333444444444555555555554444
No 173
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.79 E-value=13 Score=36.91 Aligned_cols=53 Identities=15% Similarity=0.278 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 260 TLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 260 ~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
.|...+..|..++..|++++..|..|+..|+.++..+..+ .+.+++|+.+|+.
T Consensus 39 ~l~~~~~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e-------~~~~~ee~~~l~~ 91 (428)
T 4b4t_K 39 ALSNVNSDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRE-------LKRAQEEVKRIQS 91 (428)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHTC
T ss_pred hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHcC
Confidence 3444455555566666666666666777777666555332 2456677766654
No 174
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=59.27 E-value=54 Score=24.59 Aligned_cols=7 Identities=29% Similarity=0.396 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 037696 312 KEIERLR 318 (363)
Q Consensus 312 kEIerLR 318 (363)
.||..||
T Consensus 56 ~Ei~elr 62 (77)
T 3trt_A 56 QESTEYR 62 (77)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 175
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=58.90 E-value=9.6 Score=28.02 Aligned_cols=24 Identities=8% Similarity=0.357 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVA 273 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela 273 (363)
+|+++...+..|..||..|..++.
T Consensus 28 FLd~v~~~~~~l~~e~~~L~~~~~ 51 (57)
T 2wuj_A 28 FLAQVRKDYEIVLRKKTELEAKVN 51 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 176
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=58.79 E-value=62 Score=32.34 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 256 RSVTTLQTEVSALSPRVAFLDHQRLILNVD 285 (363)
Q Consensus 256 ~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~E 285 (363)
.++..|..+-..|..++..|+.+...+..+
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~ 60 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVE 60 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555554444444433
No 177
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=58.65 E-value=15 Score=25.26 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 271 RVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 271 ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
++...++....|..+|..|.+++..
T Consensus 8 Kn~a~qqDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 8 KNDTHQQDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhHhhHHHHHHHHHHHHHHHHh
Confidence 3333334444444445555554443
No 178
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=58.51 E-value=63 Score=25.15 Aligned_cols=48 Identities=21% Similarity=0.218 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFL------DHQRLILNVDNSALKQRIAALA 297 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L------~qq~~~L~~EN~~LKqrL~~L~ 297 (363)
-++.|+.++..|+.+...|..++..- -.....|..+-..|..+|..+.
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~ 76 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAF 76 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999998888641 1334455555555555555543
No 179
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=58.34 E-value=70 Score=25.65 Aligned_cols=42 Identities=14% Similarity=0.243 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~ 294 (363)
.|+..+..|..+-..|..++..|......|..+-..|+....
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~ 49 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAE 49 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444333333333333
No 180
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=58.02 E-value=29 Score=34.38 Aligned_cols=33 Identities=21% Similarity=0.103 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 264 EVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 264 ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
|...|..++..|.++...|..+++.++.++..+
T Consensus 4 ~~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 4 MHAALSTEVVHLRQRTEELLRCNEQQAAELETC 36 (412)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666655554
No 181
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=57.66 E-value=73 Score=25.63 Aligned_cols=29 Identities=21% Similarity=0.205 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 263 TEVSALSPRVAFLDHQRLILNVDNSALKQ 291 (363)
Q Consensus 263 ~ENs~Ls~ela~L~qq~~~L~~EN~~LKq 291 (363)
.||..|..++..++.+...|..||..|+.
T Consensus 38 ~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 38 KENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777888888888777788888877765
No 182
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=57.24 E-value=43 Score=25.88 Aligned_cols=13 Identities=38% Similarity=0.503 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQ 262 (363)
Q Consensus 250 yIeELE~kV~~Lq 262 (363)
||..|+.++..|+
T Consensus 51 YI~~Lq~~~~~L~ 63 (82)
T 1am9_A 51 YIRFLQHSNQKLK 63 (82)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 183
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=56.61 E-value=81 Score=32.24 Aligned_cols=29 Identities=17% Similarity=0.098 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 037696 299 DKIFKDAHQEALKKEIERLRQVYHQQNIK 327 (363)
Q Consensus 299 e~~~KeA~~E~LkkEIerLRql~~qq~~~ 327 (363)
..++.....+.+...|+.|+..+.++..+
T Consensus 164 ~i~~l~~~~~~~~~~i~~l~~~~~~~~~~ 192 (461)
T 3ghg_B 164 NLRVLRSILENLRSKIQKLESDVSAQMEY 192 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33444556678889999999988877664
No 184
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=56.28 E-value=47 Score=29.54 Aligned_cols=13 Identities=15% Similarity=0.320 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHH
Q 037696 282 LNVDNSALKQRIA 294 (363)
Q Consensus 282 L~~EN~~LKqrL~ 294 (363)
|..|-..|+.++.
T Consensus 118 L~~Ei~~Lr~qL~ 130 (175)
T 3lay_A 118 VAKEMESLGQKLD 130 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333343333
No 185
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=56.16 E-value=22 Score=24.61 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHh
Q 037696 309 ALKKEIERLRQVYH 322 (363)
Q Consensus 309 ~LkkEIerLRql~~ 322 (363)
.|..||.|||.+++
T Consensus 19 ~Le~EV~RL~~ll~ 32 (36)
T 1kd8_A 19 HLENEVARLEKENA 32 (36)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 44555555555544
No 186
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=55.44 E-value=77 Score=25.21 Aligned_cols=48 Identities=21% Similarity=0.116 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
++.|..+-.+|-.--..|----..|..+...|..|+..|+.++.++.+
T Consensus 11 vEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~ 58 (77)
T 2w83_C 11 VENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQ 58 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 445555555544433333333344455555566666666666666554
No 187
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=55.40 E-value=52 Score=30.46 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 263 TEVSALSPRVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 263 ~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
.||..|..+|..++.++..|..||..||.-+..
T Consensus 115 eEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 115 KENEKLHKEIEQKDNEIARLKKENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888888888888888888887764443
No 188
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=55.27 E-value=33 Score=23.30 Aligned_cols=32 Identities=47% Similarity=0.567 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 265 VSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 265 Ns~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
.+.|..++..|.+|...|+-.-..||.++..|
T Consensus 3 vsalkekvsalkeqflmlmfkvsalkekvsal 34 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLMLMFKVSALKEKVSAL 34 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566677777777877877777888777665
No 189
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=54.65 E-value=77 Score=24.97 Aligned_cols=14 Identities=21% Similarity=0.441 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 037696 308 EALKKEIERLRQVY 321 (363)
Q Consensus 308 E~LkkEIerLRql~ 321 (363)
+.+..++..|+.-+
T Consensus 88 ~~l~~~~~~l~~~~ 101 (112)
T 1l8d_A 88 SELERELRRIDMEI 101 (112)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444454444443
No 190
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=54.58 E-value=1.1e+02 Score=27.80 Aligned_cols=38 Identities=18% Similarity=-0.007 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALK 290 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LK 290 (363)
+|+.++..|+.+|..|...+..|..++..+..+..++.
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E 173 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALE 173 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555444444444444333
No 191
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.98 E-value=1.2e+02 Score=26.79 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=23.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 289 LKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 289 LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
++.+...|..+..=++...+.+...+..|+.++..
T Consensus 113 ~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~ 147 (154)
T 2ocy_A 113 IEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHS 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444567888999999999988763
No 192
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=53.76 E-value=73 Score=24.45 Aligned_cols=30 Identities=10% Similarity=0.037 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQRLIL 282 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L 282 (363)
.++.++...+.....+...|..|.+++..|
T Consensus 24 ~~e~~l~~~e~~~~~~E~ev~~L~kKiq~l 53 (81)
T 1ic2_A 24 QAEADKKAAEERSKQLEDELVALQKKLKGT 53 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 193
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=53.58 E-value=44 Score=26.89 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 264 EVSALSPRVAFLDHQRLILNVDNSALK 290 (363)
Q Consensus 264 ENs~Ls~ela~L~qq~~~L~~EN~~LK 290 (363)
||..|..+|..|+..+..|..+|..|+
T Consensus 47 EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 47 ENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555444444444444444443
No 194
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=52.97 E-value=1.9e+02 Score=29.01 Aligned_cols=45 Identities=9% Similarity=0.040 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 037696 282 LNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNI 326 (363)
Q Consensus 282 L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~~ 326 (363)
+..|...|..-|..............+.....|..|+..+.+...
T Consensus 89 ml~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 89 MLEEIMKYEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444433333333334455666777777777765443
No 195
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=52.94 E-value=53 Score=31.63 Aligned_cols=75 Identities=16% Similarity=0.080 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 245 VRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 245 ~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
..-+.+|..|...+...+.+...+...|..++. .|...-..|+.....|...+.-+.+..+.|++||+.|+..+.
T Consensus 119 ~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~---~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~ 193 (346)
T 2nrj_A 119 ETLKEGITDLRGEIQQNQKYAQQLIEELTKLRD---SIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVN 193 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHH
Confidence 334566777777777777777777766666654 344555567777776666655566677899999999988776
No 196
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=52.86 E-value=6.8 Score=36.29 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 037696 280 LILNVDNSALKQRI 293 (363)
Q Consensus 280 ~~L~~EN~~LKqrL 293 (363)
..|..||..||.-|
T Consensus 46 ~~l~~En~rLr~lL 59 (255)
T 2j5u_A 46 ADLKKENKDLKESL 59 (255)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 34555666666543
No 197
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=52.73 E-value=28 Score=23.86 Aligned_cols=15 Identities=13% Similarity=0.182 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHh
Q 037696 308 EALKKEIERLRQVYH 322 (363)
Q Consensus 308 E~LkkEIerLRql~~ 322 (363)
..|..|+.|||.++|
T Consensus 18 ~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 18 YHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 456778888888776
No 198
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=52.71 E-value=88 Score=25.07 Aligned_cols=57 Identities=14% Similarity=0.259 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 243 SRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 243 SR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
...+-.+-|.+||..-..|..+...+..+...|.++-...-.+-+.++-++..+..+
T Consensus 19 eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE 75 (96)
T 3q8t_A 19 EEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDE 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555555555555555544444444444444444444443
No 199
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=52.64 E-value=29 Score=26.97 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 037696 284 VDNSALKQR 292 (363)
Q Consensus 284 ~EN~~LKqr 292 (363)
.+|..|+++
T Consensus 68 ~e~~~L~~~ 76 (80)
T 1nlw_A 68 REQRHLKRQ 76 (80)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 200
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=52.56 E-value=19 Score=24.06 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 273 AFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 273 a~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
+.|+.+....+.||-.|.+.++.|+.+
T Consensus 4 aqlekevaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 4 AQLEKEVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 334444445567788888877777654
No 201
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=52.44 E-value=7.7 Score=32.77 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVA 273 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela 273 (363)
-+++|..++..|+.||..|+.+|.
T Consensus 9 t~EeLaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 9 TYEEMVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367888888888888887777775
No 202
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=52.08 E-value=7.7 Score=28.37 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037696 247 KLQYISELERSVTTLQTEVSALS 269 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls 269 (363)
+..||++||.+|..|+.....|.
T Consensus 47 ~~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 47 KRARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh
Confidence 34889999999998887666543
No 203
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=51.54 E-value=44 Score=27.71 Aligned_cols=18 Identities=28% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 037696 281 ILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 281 ~L~~EN~~LKqrL~~L~q 298 (363)
.|..+|..|..+|++|+.
T Consensus 95 ~l~~~n~~L~~riqeLE~ 112 (118)
T 4ati_A 95 KLEHANRHLLLRVQELEM 112 (118)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555543
No 204
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=50.77 E-value=69 Score=25.22 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 267 ALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 267 ~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
.|+.++..+......|..|-..++.-+..+...+.---+....+..++..||..+.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD 59 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVD 59 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 34444444444444444444444444444333222222333445566666665444
No 205
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=50.42 E-value=1.2e+02 Score=30.34 Aligned_cols=6 Identities=50% Similarity=1.010 Sum_probs=3.2
Q ss_pred cccccc
Q 037696 196 VESSCK 201 (363)
Q Consensus 196 ~~s~~~ 201 (363)
.++.|+
T Consensus 27 ~~s~Ck 32 (390)
T 1deq_A 27 QQSACK 32 (390)
T ss_pred hccccC
Confidence 355565
No 206
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=49.92 E-value=92 Score=24.45 Aligned_cols=46 Identities=26% Similarity=0.224 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALA 297 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~ 297 (363)
.+||.+...|..+...|..+++.+...+..|......|..+|..|.
T Consensus 38 kele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~ 83 (89)
T 3bas_A 38 KELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLK 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666655556666666555555555555543
No 207
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=49.81 E-value=1.1e+02 Score=25.24 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 037696 264 EVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQ 319 (363)
Q Consensus 264 ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRq 319 (363)
....+...+..|.+.......-...|..++..|..+..|.....| .||..|+.
T Consensus 63 ~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~FLKk~he---eEl~eLq~ 115 (119)
T 3ol1_A 63 QREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAFLKKLHE---EEIQELQA 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHS
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 344556666677777777777778888888888888777554444 67766653
No 208
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=49.57 E-value=38 Score=27.27 Aligned_cols=35 Identities=26% Similarity=0.265 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 282 LNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 282 L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
...||..|..+|..|.. ++..|++|.+.||.+...
T Consensus 44 aL~EN~~Lh~~ie~l~e-------Ei~~lk~en~eL~elae~ 78 (83)
T 1uii_A 44 ALKENEKLHKEIEQKDN-------EIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 44688888888887654 446777888888877664
No 209
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=49.56 E-value=9.1 Score=32.33 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 272 VAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 272 la~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
++.|..++..|..||+.||.+|..
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~ 33 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS 33 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445566667778999999999974
No 210
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=49.56 E-value=1.2e+02 Score=25.84 Aligned_cols=38 Identities=16% Similarity=0.304 Sum_probs=20.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 037696 290 KQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQQNIK 327 (363)
Q Consensus 290 KqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~qq~~~ 327 (363)
..++.+|..+..----.......|+++||.-....+.+
T Consensus 70 q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 70 QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhH
Confidence 33455555443221123344557888888776655543
No 211
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=49.45 E-value=89 Score=24.19 Aligned_cols=14 Identities=36% Similarity=0.508 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHh
Q 037696 309 ALKKEIERLRQVYH 322 (363)
Q Consensus 309 ~LkkEIerLRql~~ 322 (363)
.|..||...|.++.
T Consensus 44 ~Le~EIatYRkLLE 57 (74)
T 2xv5_A 44 ALDMEIHAYRKLLE 57 (74)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 34566666666554
No 212
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=48.68 E-value=98 Score=24.45 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037696 275 LDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 275 L~qq~~~L~~EN~~LKqrL~~L 296 (363)
|..++..|..|...|+-+++.+
T Consensus 25 Lq~Ql~~Lq~Ev~~LRGqiE~~ 46 (83)
T 2xdj_A 25 LQQQLSDNQSDIDSLRGQIQEN 46 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHH
Confidence 3344444444444444444443
No 213
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=48.35 E-value=31 Score=28.13 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 037696 283 NVDNSALKQRIAALAQDK-IFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 283 ~~EN~~LKqrL~~L~qe~-~~KeA~~E~LkkEIerLRql~~q 323 (363)
..|-..+|+.|-.|+... .+| +...+||.+||.-+.+
T Consensus 49 i~Emq~Ir~tvyeLE~~h~kmK----q~YEeEI~rLr~eLe~ 86 (92)
T 3vp9_A 49 LAEMQQIRNTVYERELTHRKMK----DAYEEEIKHLKLGLEQ 86 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 344555666666665533 223 3567899999987764
No 214
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=47.69 E-value=25 Score=23.21 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
+.|..-+..|+.||.+|..+++.|.
T Consensus 2 dqlnallasleaenkqlkakveell 26 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELL 26 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888888777664
No 215
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=47.37 E-value=92 Score=24.96 Aligned_cols=41 Identities=20% Similarity=0.207 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 281 ILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVY 321 (363)
Q Consensus 281 ~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~ 321 (363)
+|..|-+.||.+|..|+.+...-+-...+.+.||.-|+..+
T Consensus 23 ~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qL 63 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQV 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34444444444444444443333323333334444444433
No 216
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=47.28 E-value=79 Score=22.94 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037696 267 ALSPRVAFLDHQRLILNVDN 286 (363)
Q Consensus 267 ~Ls~ela~L~qq~~~L~~EN 286 (363)
-|+.+++.|...+..|+..-
T Consensus 7 ylrkkiarlkkdnlqlerde 26 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDE 26 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhH
Confidence 34444444443333333333
No 217
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=47.15 E-value=1.1e+02 Score=24.62 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=18.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 289 LKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 289 LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
|..=|..+-+-.+.-.+....|..+|+.++..|-
T Consensus 49 L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl 82 (93)
T 3t98_B 49 LSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYL 82 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433444333333344455666777777776665
No 218
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=47.00 E-value=27 Score=24.15 Aligned_cols=25 Identities=20% Similarity=0.143 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 270 PRVAFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 270 ~ela~L~qq~~~L~~EN~~LKqrL~ 294 (363)
.+++....+...|+.+|+.|..+|.
T Consensus 13 drlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 13 DRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455566667777766654
No 219
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=46.91 E-value=1.3e+02 Score=25.22 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 274 FLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 274 ~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.|+..+..|..+|..|+.+|..|++
T Consensus 39 ~Lq~El~~lr~~~~~l~~~iReLEq 63 (111)
T 2v66_B 39 VLEDDLSQTRAIKEQLHKYVRELEQ 63 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555443
No 220
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=46.91 E-value=51 Score=27.67 Aligned_cols=29 Identities=21% Similarity=0.043 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 267 ALSPRVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 267 ~Ls~ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
+|..++..|.+++..|+.|...|+.++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~ 57 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIAD 57 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554443
No 221
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=46.83 E-value=58 Score=30.73 Aligned_cols=42 Identities=19% Similarity=0.280 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
++-|+.+......|..+|-.+++.|.... +.+-+||+.|+++
T Consensus 165 LelL~IRK~ma~sEI~EID~KI~~L~~mR-------~~vl~RLA~lEqd 206 (242)
T 3uux_B 165 LEFLNIQKNSTLSEIRDIEVEVENLRQKK-------EKLLGKIANIEQN 206 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhh
Confidence 45566666666666666666666654333 3344566666554
No 222
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=46.43 E-value=83 Score=31.03 Aligned_cols=59 Identities=22% Similarity=0.240 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAF-LDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEI 314 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~-L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEI 314 (363)
+|..++..|+.+...++.++.. -.+....|..+-+.|+.+|..|+.+..-.+ +.|...+
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 98 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKE---ARLEALL 98 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Confidence 3445555666666666665542 113445677788888888888876543322 4455555
No 223
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=46.15 E-value=91 Score=27.43 Aligned_cols=26 Identities=23% Similarity=0.386 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDH 277 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~q 277 (363)
.+||..++.--+.+..|...+..|..
T Consensus 101 rELEADLKEKDsMVe~LT~TiG~LrK 126 (167)
T 4gkw_A 101 GELEADLKEKDSMVESLTETIGILRK 126 (167)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhhhhHHHHHHHHHHHHHHH
Confidence 46666666666666666666666654
No 224
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=45.96 E-value=1e+02 Score=24.76 Aligned_cols=42 Identities=24% Similarity=0.198 Sum_probs=18.1
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTT---LQTEVSALSPRVAFLDHQRLILNVDNSALKQ 291 (363)
Q Consensus 250 yIeELE~kV~~---Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKq 291 (363)
--.-|+.+|.. ++.|....+..+..++.++...+..|..|..
T Consensus 15 LQSALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~ 59 (81)
T 1wt6_A 15 LQEALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEA 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555443 3334444444444444444444444444433
No 225
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=45.78 E-value=1.5e+02 Score=25.58 Aligned_cols=63 Identities=10% Similarity=0.149 Sum_probs=32.6
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 228 KRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 228 KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
-|.++.|-||.-+---| |+.||.+++........--.+...+.+++..+..+...-..++...
T Consensus 37 eR~~k~lE~r~~~deEr------~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~a 99 (147)
T 2b9c_A 37 ERGMKVIESRAQKDEEK------MEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELS 99 (147)
T ss_dssp THHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcccHHH------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777877765554 4455555555444444444444444444444444444444444433
No 226
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=45.56 E-value=1.5e+02 Score=25.65 Aligned_cols=17 Identities=24% Similarity=0.460 Sum_probs=1.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037696 304 DAHQEALKKEIERLRQV 320 (363)
Q Consensus 304 eA~~E~LkkEIerLRql 320 (363)
++..+.+...+..|+.+
T Consensus 116 e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 116 DMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp HHCC-------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 227
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.45 E-value=32 Score=34.16 Aligned_cols=45 Identities=11% Similarity=0.228 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L 296 (363)
.+|..+++.|+.+...|..+...+..+...+..|-..++.++..|
T Consensus 45 ~dl~~~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~ee~~~l 89 (428)
T 4b4t_K 45 SDIYFKLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRI 89 (428)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554444444555555555444
No 228
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=45.42 E-value=35 Score=33.70 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDH 277 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~q 277 (363)
+|..+-..++.+...|..+...+.+
T Consensus 34 ~~~~~~r~~~~~~~~l~~~~n~~sk 58 (425)
T 2dq3_A 34 ELDKRRREIIKRLEALRSERNKLSK 58 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443333
No 229
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=45.32 E-value=1e+02 Score=23.80 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 243 SRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILN 283 (363)
Q Consensus 243 SR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~ 283 (363)
-|...+.-|..||..+..++.+......+.+.|..-...|.
T Consensus 6 e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le 46 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALD 46 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556665555555555444444444433333333
No 230
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=45.07 E-value=2.4e+02 Score=28.60 Aligned_cols=31 Identities=13% Similarity=0.015 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQR 279 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~ 279 (363)
..|-+|..+-..|+.+...|..+...+.++.
T Consensus 37 d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i 67 (484)
T 3lss_A 37 DAIIEADKKWRRTQFLTEASKKLINICSKAV 67 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455444444444444444444444433
No 231
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=43.85 E-value=79 Score=25.72 Aligned_cols=20 Identities=15% Similarity=0.326 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037696 254 LERSVTTLQTEVSALSPRVA 273 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela 273 (363)
|+..+..|+.....+..++.
T Consensus 100 l~~~~~~l~~~l~~l~~~i~ 119 (133)
T 1fxk_C 100 LESTLQKMGENLRAITDIMM 119 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 232
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=43.08 E-value=1.9e+02 Score=26.21 Aligned_cols=27 Identities=11% Similarity=0.033 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
.+..|..++..|+.+...|..++..+.
T Consensus 140 ~~~~L~~e~~~l~~~~~~l~~qlE~~v 166 (213)
T 1ik9_A 140 KNEHLQKENERLLRDWNDVQGRFEKAV 166 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 233
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=42.86 E-value=50 Score=22.10 Aligned_cols=14 Identities=50% Similarity=0.484 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 037696 283 NVDNSALKQRIAAL 296 (363)
Q Consensus 283 ~~EN~~LKqrL~~L 296 (363)
..|-..||-+++.|
T Consensus 15 kkeiaalkfeiaal 28 (33)
T 4dzn_A 15 KKEIAALKFEIAAL 28 (33)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444444
No 234
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=42.66 E-value=57 Score=21.82 Aligned_cols=16 Identities=44% Similarity=0.522 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 037696 282 LNVDNSALKQRIAALA 297 (363)
Q Consensus 282 L~~EN~~LKqrL~~L~ 297 (363)
|...|-.-|++++.|.
T Consensus 13 lkarnyaakqkvqalr 28 (33)
T 1fmh_B 13 LKARNYAAKQKVQALR 28 (33)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 3344444445554443
No 235
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=41.73 E-value=1.2e+02 Score=28.06 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILN 283 (363)
Q Consensus 225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~ 283 (363)
.+...+|+-|+.|-.+-++ .+..|+.+++..+.|+..+.++++..+++...+.
T Consensus 160 asde~Ik~yLa~R~~~lK~------kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~ 212 (228)
T 3q0x_A 160 GNDSVVKQFLAFRLSEVKG------TCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLR 212 (228)
T ss_dssp CCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677889988888776553 4577888888888888888888877766554443
No 236
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=41.26 E-value=99 Score=24.26 Aligned_cols=22 Identities=5% Similarity=0.220 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037696 241 QRSRVRKLQYISELERSVTTLQ 262 (363)
Q Consensus 241 qRSR~RKkqyIeELE~kV~~Lq 262 (363)
...+..+..-+.+++.-...|.
T Consensus 26 ~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 26 VQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444445544444443
No 237
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=41.12 E-value=80 Score=29.07 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKI 301 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~ 301 (363)
|+=.|+++..|+.+|..|..++..|.+ ...+|..+-.++..+.....
T Consensus 67 VSL~erQ~~~LR~r~~~Le~~L~~Li~----~A~~Ne~l~~~~~~l~l~LL 113 (252)
T 3e98_A 67 VSLVERQVRLLRERNIEMRHRLSQLMD----VARENDRLFDKTRRLVLDLL 113 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 355566677777777777777776653 35678888888887766543
No 238
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=40.93 E-value=1.1e+02 Score=22.82 Aligned_cols=13 Identities=8% Similarity=0.445 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 037696 284 VDNSALKQRIAAL 296 (363)
Q Consensus 284 ~EN~~LKqrL~~L 296 (363)
.|..+|+.+|+.|
T Consensus 56 ~Ei~elrr~iq~L 68 (77)
T 3trt_A 56 QESTEYRRQVQSL 68 (77)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 239
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=40.39 E-value=1.4e+02 Score=27.97 Aligned_cols=29 Identities=24% Similarity=0.364 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 248 LQYISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
++.|..-|..|..++..-..|..++..|.
T Consensus 96 LK~IR~~E~svqp~R~~R~~l~~~I~kLk 124 (234)
T 3plt_A 96 LKSIRNIEASVQPSRDRKEKITDEIAHLK 124 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 33444455555555555555555555443
No 240
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=39.95 E-value=25 Score=25.74 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 275 LDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 275 L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
+...+..|..||..|+.++..|..
T Consensus 32 v~~~~~~l~~e~~~L~~~~~~l~~ 55 (57)
T 2wuj_A 32 VRKDYEIVLRKKTELEAKVNELDE 55 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566677788888888777644
No 241
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=39.59 E-value=1.4e+02 Score=23.46 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIA 294 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~ 294 (363)
..|..++.++..|.............|..++..|..|...|..++.
T Consensus 14 eEm~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~ 59 (89)
T 3bas_A 14 EEMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMK 59 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555444444444444555555555555555555433
No 242
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=39.53 E-value=36 Score=32.37 Aligned_cols=23 Identities=26% Similarity=0.483 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037696 257 SVTTLQTEVSALSPRVAFLDHQR 279 (363)
Q Consensus 257 kV~~Lq~ENs~Ls~ela~L~qq~ 279 (363)
+++.|+.++..|..+++.|++..
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~ 208 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQER 208 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433
No 243
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=39.18 E-value=1.5e+02 Score=25.08 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 225 IDPKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVA 273 (363)
Q Consensus 225 ~D~KR~RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela 273 (363)
.|.-|+|+..- ..-+.--.+|++-..|+|++++.+...-..+..++.
T Consensus 39 ~ELeRLr~~~d--~~~K~HE~kklqLkse~e~E~ae~k~KYD~~lqe~e 85 (115)
T 3vem_A 39 HELEKLRRESE--NSKKTFEEKKSILKAELERKMAEVQAEFRRKFHEVE 85 (115)
T ss_dssp HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666321 122233356777777888887777766665554443
No 244
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=39.17 E-value=1e+02 Score=21.91 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037696 254 LERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
|+..+..+..+...+..++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k 32 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAK 32 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344433333333333333333
No 245
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=39.01 E-value=26 Score=26.84 Aligned_cols=18 Identities=17% Similarity=0.259 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037696 273 AFLDHQRLILNVDNSALK 290 (363)
Q Consensus 273 a~L~qq~~~L~~EN~~LK 290 (363)
..|+++...|..++..|+
T Consensus 60 ~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 60 QYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 246
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=38.72 E-value=0.62 Score=38.14 Aligned_cols=25 Identities=32% Similarity=0.355 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHhHHHHHHHHHHHHH
Q 037696 225 IDPKRVKRILANRQSAQRSRVRKLQ 249 (363)
Q Consensus 225 ~D~KR~RR~LsNRESAqRSR~RKkq 249 (363)
.--+.+||.-+||.+||++|.||+.
T Consensus 63 ~lIrdiRRRgKNkvAAqnCRKRKld 87 (90)
T 2lz1_A 63 ALIRDIRRRGKNKVAAQNCRKRKLE 87 (90)
T ss_dssp HHHHHHHHHSCSCCCCCCCSCCCCS
T ss_pred HHHHHHHHhhhhHHHHHHcchhhcc
Confidence 3457788999999999999999864
No 247
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=38.58 E-value=1.2e+02 Score=30.92 Aligned_cols=15 Identities=13% Similarity=0.226 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHH
Q 037696 282 LNVDNSALKQRIAAL 296 (363)
Q Consensus 282 L~~EN~~LKqrL~~L 296 (363)
|..|-+.|+.+|..|
T Consensus 76 l~~~~~~l~~~i~~l 90 (485)
T 3qne_A 76 LIAEKEKLSNEKKEI 90 (485)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444444
No 248
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=38.57 E-value=32 Score=26.62 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=22.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 291 QRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 291 qrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
.+|.+|+.....|++++..|+.++.+++.++.
T Consensus 25 e~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 25 ERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666767777788888889999988887765
No 249
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=38.50 E-value=1e+02 Score=28.53 Aligned_cols=43 Identities=14% Similarity=0.215 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 037696 258 VTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDK 300 (363)
Q Consensus 258 V~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~ 300 (363)
+++|+++....-.+...|......|.+|+..|+..+..|++..
T Consensus 32 ~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~ 74 (206)
T 3oa7_A 32 LQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGNT 74 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCCH
Confidence 4555566666666666777777778999999999999998753
No 250
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=38.24 E-value=52 Score=21.32 Aligned_cols=14 Identities=57% Similarity=0.805 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 037696 283 NVDNSALKQRIAAL 296 (363)
Q Consensus 283 ~~EN~~LKqrL~~L 296 (363)
+-||..|.++|+.|
T Consensus 6 efendaleqkiaal 19 (28)
T 3ra3_A 6 EFENDALEQKIAAL 19 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHH
Confidence 34444444444444
No 251
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.72 E-value=21 Score=35.64 Aligned_cols=7 Identities=29% Similarity=0.387 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 037696 311 KKEIERL 317 (363)
Q Consensus 311 kkEIerL 317 (363)
++||..+
T Consensus 66 ~~~i~~~ 72 (434)
T 4b4t_M 66 KEKIKNN 72 (434)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 3344333
No 252
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=37.61 E-value=1.1e+02 Score=22.32 Aligned_cols=22 Identities=36% Similarity=0.321 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037696 254 LERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L 275 (363)
+...+..|+.+...++..++..
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q 26 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARL 26 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444433
No 253
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=37.12 E-value=1.4e+02 Score=22.85 Aligned_cols=48 Identities=8% Similarity=0.071 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
..|+............+..++.........+..|-..|..+|..|+.+
T Consensus 9 ~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~e 56 (81)
T 1ic2_A 9 QMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDE 56 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 344444444444445555555555555556666666666666666554
No 254
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.01 E-value=1.1e+02 Score=21.71 Aligned_cols=32 Identities=9% Similarity=0.052 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 248 LQYISELERSVTTLQTEVSALSPRVAFLDHQR 279 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~ 279 (363)
..++.+++.++..+..+...+..++..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l 42 (60)
T 3htk_A 11 ENQVEELTEKCSLKTDEFLKAKEKINEIFEKL 42 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443333
No 255
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=36.85 E-value=32 Score=27.01 Aligned_cols=18 Identities=33% Similarity=0.272 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037696 279 RLILNVDNSALKQRIAAL 296 (363)
Q Consensus 279 ~~~L~~EN~~LKqrL~~L 296 (363)
+..|..+|+.||..|..|
T Consensus 45 narL~eq~~lLK~EIRRl 62 (71)
T 3bbp_D 45 NAILMEQIKLLKSEIRRL 62 (71)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444444
No 256
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=36.12 E-value=54 Score=22.44 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 037696 259 TTLQTEVSALSPRVAFLDHQ 278 (363)
Q Consensus 259 ~~Lq~ENs~Ls~ela~L~qq 278 (363)
...+.+...|+.++..|+++
T Consensus 10 ~a~qqDIddlkrQN~~Le~Q 29 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQ 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHhhHHHHHHHHHHHHHH
Confidence 33333444444444444333
No 257
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=35.58 E-value=1.5e+02 Score=27.50 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHh
Q 037696 282 LNVDNSALKQRIAALAQ 298 (363)
Q Consensus 282 L~~EN~~LKqrL~~L~q 298 (363)
...||..|..+|..|..
T Consensus 113 aLeEN~~Lh~~ie~l~e 129 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDN 129 (209)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666666666544
No 258
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=35.50 E-value=95 Score=27.46 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 236 NRQSAQRSRVRKLQYISELERSVTTLQT 263 (363)
Q Consensus 236 NRESAqRSR~RKkqyIeELE~kV~~Lq~ 263 (363)
-|.-.+.+-.+|++|+.||..+...|+.
T Consensus 13 Ek~~~~~rI~~K~~~LqeL~~Q~vafkn 40 (155)
T 2aze_A 13 ERQRRLERIKQKQSQLQELILQQIAFKN 40 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444445667777777666655443
No 259
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=35.49 E-value=2.9e+02 Score=26.05 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.-|.|+..+++.|...-..+..+|+.|++.=..|+.+...++.||..++.
T Consensus 177 sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 177 SEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999999999999887654
No 260
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=35.41 E-value=52 Score=31.29 Aligned_cols=8 Identities=25% Similarity=0.633 Sum_probs=3.4
Q ss_pred hhhccccc
Q 037696 136 QLMSMFSD 143 (363)
Q Consensus 136 q~~smf~d 143 (363)
.+..+|-.
T Consensus 72 ev~~~lK~ 79 (315)
T 2ve7_A 72 EVPRIFKD 79 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444433
No 261
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=34.85 E-value=89 Score=25.03 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRVAFLDHQR 279 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~ 279 (363)
-.+.+.++|.+...|+..|..|..+++.|+.+.
T Consensus 47 e~~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 47 EQQRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 346678899999999999999999999887654
No 262
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=34.69 E-value=1.7e+02 Score=27.21 Aligned_cols=35 Identities=14% Similarity=0.093 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 265 VSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 265 Ns~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
...++.++..|.+....+..|+..+..+|+..++.
T Consensus 173 ~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~ 207 (228)
T 3q0x_A 173 LSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQ 207 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555556666666666665443
No 263
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=33.00 E-value=4.4e+02 Score=27.47 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 246 RKLQYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 246 RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
+++..+..++.-|+.++...+.+..+....+.....+..|...|+.++..+.+
T Consensus 360 dArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~ 412 (602)
T 1cii_A 360 DARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQ 412 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 34555566666677777777777777677777777777777777777766654
No 264
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=32.97 E-value=36 Score=33.63 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 256 RSVTTLQTEVSALSPRVAFLDHQRLILNVD 285 (363)
Q Consensus 256 ~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~E 285 (363)
.++..|..+-..|..++..|+.+...+..+
T Consensus 30 ~~~~~~~~~~r~~~~~~~~l~~~~n~~sk~ 59 (425)
T 2dq3_A 30 DKVLELDKRRREIIKRLEALRSERNKLSKE 59 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555544443
No 265
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=32.72 E-value=1.2e+02 Score=24.36 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 283 NVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 283 ~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
..||..|..+|..+.. +...|++|..+|+.+..+
T Consensus 37 L~EN~~Lh~~ie~~~e-------Ei~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 37 LKENEKLHKEIEQKDS-------EIARLRKENKDLAEVAEH 70 (83)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 4577777776666533 345666666666666554
No 266
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=32.40 E-value=71 Score=23.58 Aligned_cols=18 Identities=33% Similarity=0.630 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhhhhh
Q 037696 309 ALKKEIERLRQVYHQQNI 326 (363)
Q Consensus 309 ~LkkEIerLRql~~qq~~ 326 (363)
.+.+||+.||..|+.+-.
T Consensus 25 ~Me~Ei~elr~RY~~KRq 42 (51)
T 2jo8_A 25 MMEQEIEEIRQKYQSKRQ 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHh
Confidence 567899999999886543
No 267
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=32.38 E-value=2.5e+02 Score=24.31 Aligned_cols=62 Identities=15% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEAL 310 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~L 310 (363)
.|+..|+.+++.-..-...|..-..+..+++...+..-.+.|.++..+.+-+.--+.+.+.|
T Consensus 86 eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 86 EYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
No 268
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=32.32 E-value=99 Score=24.27 Aligned_cols=42 Identities=19% Similarity=0.248 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
++-|+.+......|..++..+++.|..-...+ -.||+.++++
T Consensus 9 Leml~IrKnma~sEI~EID~Ki~nL~~mR~iv-------ldRlA~lEqd 50 (72)
T 2xu6_A 9 LEFLNIQKNSTMSEIRDIEVEVENLRQKKEKL-------LGKIANIEQN 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhh
Confidence 45566666666777777777776665433322 3455555554
No 269
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=32.01 E-value=60 Score=21.74 Aligned_cols=24 Identities=33% Similarity=0.443 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
.||..+..|++-+++|..++..|+
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle 26 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLE 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666665555544
No 270
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=31.61 E-value=74 Score=28.76 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
++|+-|=..+..|+.+|..|..++..|
T Consensus 145 elid~~ld~~~~L~~~n~~LqkeNeRL 171 (184)
T 3w03_C 145 ELICYCLDTIAENQAKNEHLQKENERL 171 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555444443333
No 271
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=31.57 E-value=73 Score=32.70 Aligned_cols=25 Identities=12% Similarity=0.123 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
..+|+.++.+++.+.......+..-
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~ 361 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEA 361 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777777777666655554443
No 272
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=31.53 E-value=2.9e+02 Score=24.81 Aligned_cols=28 Identities=11% Similarity=0.293 Sum_probs=20.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 037696 227 PKRVKRILANRQSAQRSRVRKLQYISEL 254 (363)
Q Consensus 227 ~KR~RR~LsNRESAqRSR~RKkqyIeEL 254 (363)
-.+++++..-|.-..+-++-|..|+-++
T Consensus 36 k~~l~~~e~~r~k~~~h~~~k~~qlre~ 63 (169)
T 3k29_A 36 QEKLRERESERDKVKNHYMQKIRQLREQ 63 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777788888787766554
No 273
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=31.53 E-value=2.9e+02 Score=24.95 Aligned_cols=30 Identities=17% Similarity=0.244 Sum_probs=13.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 293 IAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 293 L~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
+.....+.....+..+.++.++..++..+.
T Consensus 116 ~~~a~~~~~~~~a~l~~~~a~l~~a~a~l~ 145 (341)
T 3fpp_A 116 LDNAATEMAVKQAQIGTIDAQIKRNQASLD 145 (341)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333334444455555555554443
No 274
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=31.39 E-value=3.7e+02 Score=26.08 Aligned_cols=13 Identities=54% Similarity=0.787 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHH
Q 037696 307 QEALKKEIERLRQ 319 (363)
Q Consensus 307 ~E~LkkEIerLRq 319 (363)
.+.|.++|++|.+
T Consensus 92 k~~Le~~ierLs~ 104 (302)
T 3ibp_A 92 KNAVDEEIERLSQ 104 (302)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 3566777777554
No 275
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=30.91 E-value=78 Score=23.26 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDH 277 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~q 277 (363)
.||.-|..|+..|..|...++.|+.
T Consensus 21 klenivarlendnanlekdianlek 45 (56)
T 3he4_A 21 KLENIVARLENDNANLEKDIANLEK 45 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchHHHHHHHHHH
Confidence 3444555555555555444444443
No 276
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=30.73 E-value=26 Score=32.47 Aligned_cols=30 Identities=10% Similarity=-0.012 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 246 RKLQYISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 246 RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
...+..+++..++++|+.||.+|..++..|
T Consensus 145 e~~~~~e~~~~~i~ql~~En~~le~~Ie~L 174 (250)
T 2ve7_C 145 EFLWQYKSSADKMQQLNAAHQEALMKLERL 174 (250)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHSCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555544444444433
No 277
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=30.54 E-value=4e+02 Score=27.85 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
++..|++.+.+++|..+...-++..+
T Consensus 316 ~~~Aer~~e~a~ael~~a~k~~a~~~ 341 (551)
T 2b5u_A 316 VEAAERNYERARAELNQANEDVARNQ 341 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666666555444444333
No 278
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=30.48 E-value=48 Score=27.43 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhh
Q 037696 309 ALKKEIERLRQVYHQ 323 (363)
Q Consensus 309 ~LkkEIerLRql~~q 323 (363)
.|+.++++|+.++.+
T Consensus 27 ~l~~~l~~~~~~l~~ 41 (182)
T 3kqg_A 27 ALQGSLENMSKLLKR 41 (182)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 279
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=30.38 E-value=1.7e+02 Score=21.76 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
|-..|.+||.++..++.-.+.+..+++.+
T Consensus 4 ~~~~~~~le~kl~~lEnIv~~l~~eve~~ 32 (65)
T 3m0d_C 4 KEKLLAELEGKLRVFENIVAVLNKEVEAS 32 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34567788888887777666554444443
No 280
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=29.74 E-value=48 Score=34.04 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=6.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037696 291 QRIAALAQDKIFKDAHQEALKKEIERLRQVYHQ 323 (363)
Q Consensus 291 qrL~~L~qe~~~KeA~~E~LkkEIerLRql~~q 323 (363)
..+..|..+..-++++.+.|+.|+...|.....
T Consensus 419 ~~~~~~~~~~~~~~~e~~~~~~~~~~a~~~~~~ 451 (575)
T 2i1j_A 419 EEVSRIQQEVELKDSETRRLQEEVEDARRKQDE 451 (575)
T ss_dssp -----------------------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555666667777777777766543
No 281
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=29.72 E-value=2.9e+02 Score=25.29 Aligned_cols=6 Identities=33% Similarity=0.418 Sum_probs=2.8
Q ss_pred CCHHHH
Q 037696 225 IDPKRV 230 (363)
Q Consensus 225 ~D~KR~ 230 (363)
+|....
T Consensus 63 ld~~~~ 68 (369)
T 4dk0_A 63 IDSTTQ 68 (369)
T ss_dssp CCCHHH
T ss_pred EcCHHH
Confidence 454443
No 282
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=29.64 E-value=1.4e+02 Score=23.11 Aligned_cols=19 Identities=16% Similarity=0.218 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037696 243 SRVRKLQYISELERSVTTL 261 (363)
Q Consensus 243 SR~RKkqyIeELE~kV~~L 261 (363)
.+..+..-+.+++.-...|
T Consensus 23 q~~~l~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 23 QKQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333344444444433333
No 283
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=29.37 E-value=1e+02 Score=23.79 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 246 RKLQYISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 246 RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
.|...|.+||..+..-..++.+|+.++..+
T Consensus 22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 22 LKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888889888887777777777655544
No 284
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=29.31 E-value=1.2e+02 Score=27.80 Aligned_cols=21 Identities=24% Similarity=0.442 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037696 276 DHQRLILNVDNSALKQRIAAL 296 (363)
Q Consensus 276 ~qq~~~L~~EN~~LKqrL~~L 296 (363)
+.|...|..+|..|+.+|..|
T Consensus 71 erQ~~~LR~r~~~Le~~L~~L 91 (252)
T 3e98_A 71 ERQVRLLRERNIEMRHRLSQL 91 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444333
No 285
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=29.27 E-value=45 Score=21.59 Aligned_cols=14 Identities=57% Similarity=0.648 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 037696 283 NVDNSALKQRIAAL 296 (363)
Q Consensus 283 ~~EN~~LKqrL~~L 296 (363)
...|..||++|+.|
T Consensus 6 kqknarlkqeiaal 19 (28)
T 3ra3_B 6 KQKNARLKQEIAAL 19 (28)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHH
Confidence 34455555555554
No 286
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.90 E-value=4.6e+02 Score=26.07 Aligned_cols=14 Identities=21% Similarity=0.240 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHh
Q 037696 309 ALKKEIERLRQVYH 322 (363)
Q Consensus 309 ~LkkEIerLRql~~ 322 (363)
.+...|+.|+..+.
T Consensus 116 ~~~~~i~~l~~~i~ 129 (409)
T 1m1j_C 116 MNSNKITQLKQKIA 129 (409)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 34455555555444
No 287
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=27.65 E-value=1.9e+02 Score=29.46 Aligned_cols=6 Identities=17% Similarity=-0.014 Sum_probs=2.5
Q ss_pred hccccc
Q 037696 329 MKNNNN 334 (363)
Q Consensus 329 ~~~~~~ 334 (363)
++|..+
T Consensus 141 iPN~~~ 146 (484)
T 3lss_A 141 VGNILH 146 (484)
T ss_dssp CCCCCC
T ss_pred CCCCCC
Confidence 344433
No 288
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=27.46 E-value=2.2e+02 Score=25.63 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 250 YISELERSVTTLQTEVSALSPRVAFLD 276 (363)
Q Consensus 250 yIeELE~kV~~Lq~ENs~Ls~ela~L~ 276 (363)
.|..-++.|+.|+.++..|..++....
T Consensus 129 li~~AertV~kLqkeiD~LEDeL~~eK 155 (175)
T 3mud_A 129 LICYCLDTTAKNEKSIDDLEEKVAHAK 155 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555544433
No 289
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=27.31 E-value=32 Score=25.32 Aligned_cols=29 Identities=38% Similarity=0.411 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 263 TEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 263 ~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.||..|..-++. |+..|..|...|+.|+.
T Consensus 17 kenaklenivar-------lendnanlekdianlek 45 (56)
T 3he4_A 17 KENAKLENIVAR-------LENDNANLEKDIANLEK 45 (56)
T ss_dssp CHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHH-------HhcccchHHHHHHHHHH
Confidence 355555554444 44555555555555543
No 290
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=27.23 E-value=1.8e+02 Score=30.04 Aligned_cols=47 Identities=23% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 249 QYISELERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 249 qyIeELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~ 295 (363)
+|.++||+++..|+..+..--..|..|+..+..+..+-+.|..-|..
T Consensus 111 e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 111 HVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 291
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=26.37 E-value=36 Score=25.11 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037696 247 KLQYISELERSVTTLQTEVSAL 268 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~L 268 (363)
+..|++.|+.+|..|+.....|
T Consensus 56 ~~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 56 KDNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999888765554
No 292
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=26.08 E-value=1.5e+02 Score=22.28 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 037696 277 HQRLILNVDNSALKQRIAA 295 (363)
Q Consensus 277 qq~~~L~~EN~~LKqrL~~ 295 (363)
.+...|..||+.|+.-|.+
T Consensus 17 DqV~eL~qe~k~m~k~lEe 35 (56)
T 2w6b_A 17 DEVQELRQDNKKMKKSLEE 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333444455555554443
No 293
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=26.05 E-value=3.7e+02 Score=24.49 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
.+|++.+..|+.+-..+..+|...
T Consensus 24 R~LdR~~~kle~eEkk~~~~IKka 47 (218)
T 3frt_A 24 RVVDRQIRDIQREEEKVKRSVKDA 47 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444443
No 294
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=25.92 E-value=3e+02 Score=24.14 Aligned_cols=14 Identities=21% Similarity=0.183 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHH
Q 037696 308 EALKKEIERLRQVY 321 (363)
Q Consensus 308 E~LkkEIerLRql~ 321 (363)
|.+..|++++..-+
T Consensus 168 ~~~e~~~~~~~~~~ 181 (202)
T 2p4w_A 168 EENRQIIEEIFRDI 181 (202)
T ss_dssp HHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 45556666655444
No 295
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=25.41 E-value=2.6e+02 Score=22.31 Aligned_cols=31 Identities=3% Similarity=0.222 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 245 VRKLQYISELERSVTTLQTEVSALSPRVAFL 275 (363)
Q Consensus 245 ~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L 275 (363)
..|++.|.+.|..+.+.+.-..+|.-++..+
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~ 75 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRYA 75 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4455556666666665555555555444443
No 296
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A {Homo sapiens} SCOP: a.7.5.1
Probab=25.33 E-value=2.8e+02 Score=22.65 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 288 ALKQRIAALAQDKIFKDAHQEALKKEIERLRQVYH 322 (363)
Q Consensus 288 ~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~~ 322 (363)
.||++...|.....+-.-....|...+..|...+.
T Consensus 49 ~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l~ 83 (108)
T 1h7c_A 49 DIKKQAEILQESRMMIPDCQRRLEAAYLDLQRILE 83 (108)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 56666666655554444444566666666666554
No 297
>1fmh_B General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_B
Probab=25.22 E-value=1.2e+02 Score=20.32 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDH 277 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~q 277 (363)
.|..+|+.|...|-....+++.|.+
T Consensus 5 alkkrvqalkarnyaakqkvqalrh 29 (33)
T 1fmh_B 5 ALKKRVQALKARNYAAKQKVQALRH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3444455555544444444444443
No 298
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=24.96 E-value=6.6 Score=32.80 Aligned_cols=12 Identities=33% Similarity=0.623 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 037696 308 EALKKEIERLRQ 319 (363)
Q Consensus 308 E~LkkEIerLRq 319 (363)
+.|+.|++.|+.
T Consensus 82 ~~l~~E~~~lk~ 93 (107)
T 3a5t_A 82 ASMKLELDALRS 93 (107)
T ss_dssp SHHHHTTTSSSS
T ss_pred HHHHHHHHHHHH
Confidence 444455544443
No 299
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=24.78 E-value=2.5e+02 Score=21.93 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 258 VTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 258 V~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
.+.|-.||..|+.- |..-|..||.+...|..
T Consensus 10 ~q~ll~EN~~LreA----------lkqsNq~mkeR~eeL~~ 40 (70)
T 3brv_B 10 LQRCLEENQELRDA----------IRQSNQILRERCEELLH 40 (70)
T ss_dssp HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHH----------HHHHHHHHHHHHHHHHH
Confidence 34566677777654 34468888888888854
No 300
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=24.69 E-value=1.1e+02 Score=20.25 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALS 269 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls 269 (363)
.||.+...|+...+.|.
T Consensus 5 alekkcaalesklqale 21 (31)
T 3ljm_A 5 ALEKKCAALESKLQALE 21 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444443333333
No 301
>2jmh_A BLO T 5, mite allergen BLO T 5; DUST mites, group 5; NMR {Blomia tropicalis} PDB: 2jrk_A
Probab=24.66 E-value=2.7e+02 Score=23.71 Aligned_cols=9 Identities=22% Similarity=0.571 Sum_probs=4.6
Q ss_pred HHHHHHHHH
Q 037696 285 DNSALKQRI 293 (363)
Q Consensus 285 EN~~LKqrL 293 (363)
.++++|.+|
T Consensus 49 KsKe~K~~I 57 (119)
T 2jmh_A 49 KSKELQEKI 57 (119)
T ss_dssp CCHHHHHHH
T ss_pred CcHHHHHHH
Confidence 345555554
No 302
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=24.48 E-value=1.2e+02 Score=25.39 Aligned_cols=8 Identities=0% Similarity=0.214 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 037696 256 RSVTTLQT 263 (363)
Q Consensus 256 ~kV~~Lq~ 263 (363)
++++.|+.
T Consensus 105 ~ri~~l~~ 112 (151)
T 2zdi_C 105 KRLKEYDE 112 (151)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 303
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=24.30 E-value=5.7e+02 Score=25.93 Aligned_cols=12 Identities=17% Similarity=0.454 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQ 262 (363)
Q Consensus 251 IeELE~kV~~Lq 262 (363)
|++|+.+|..|.
T Consensus 102 LqeLe~~l~~ls 113 (464)
T 1m1j_B 102 LRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 455555555553
No 304
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=24.16 E-value=3.1e+02 Score=22.75 Aligned_cols=10 Identities=10% Similarity=-0.090 Sum_probs=4.9
Q ss_pred CCCHHHHHHH
Q 037696 224 IIDPKRVKRI 233 (363)
Q Consensus 224 ~~D~KR~RR~ 233 (363)
..|-.+++.+
T Consensus 43 ~~dl~~l~~I 52 (142)
T 3gp4_A 43 AEDLRWILFT 52 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455555554
No 305
>1uix_A RHO-associated kinase; coiled-coil, transferase; HET: MSE; 1.80A {Bos taurus} SCOP: h.1.27.1
Probab=24.02 E-value=2.6e+02 Score=21.80 Aligned_cols=31 Identities=19% Similarity=0.123 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 254 LERSVTTLQTEVSALSPRVAFLDHQRLILNV 284 (363)
Q Consensus 254 LE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~ 284 (363)
|...|..|..|+.+|..++..+++++..+..
T Consensus 2 ~~k~v~~l~~E~eel~~klk~~~ee~~~~~e 32 (71)
T 1uix_A 2 STSDVANLANEKEELNNKLKEAQEQLSRLKD 32 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777888887777777766665543
No 306
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=23.66 E-value=4.2e+02 Score=24.15 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVS 266 (363)
Q Consensus 252 eELE~kV~~Lq~ENs 266 (363)
.+|..++..+.++..
T Consensus 76 ~el~d~~lR~~AEfe 90 (213)
T 4ani_A 76 SEMEHRYLRLYADFE 90 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 307
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=23.59 E-value=3.8e+02 Score=23.62 Aligned_cols=11 Identities=45% Similarity=0.619 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 037696 308 EALKKEIERLR 318 (363)
Q Consensus 308 E~LkkEIerLR 318 (363)
++|.+||..||
T Consensus 116 ~aL~~Ei~~Lr 126 (175)
T 3lay_A 116 NAVAKEMESLG 126 (175)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 308
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=23.20 E-value=2.2e+02 Score=20.78 Aligned_cols=21 Identities=0% Similarity=0.077 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037696 257 SVTTLQTEVSALSPRVAFLDH 277 (363)
Q Consensus 257 kV~~Lq~ENs~Ls~ela~L~q 277 (363)
++.+|..++..|..+|..|..
T Consensus 5 ki~~Lss~V~~L~~kVdqLss 25 (52)
T 1jcd_A 5 KADQASSDAQTANAKADQASN 25 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555543
No 309
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=23.19 E-value=1.8e+02 Score=26.36 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=17.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 231 KRILANRQSAQRSRVRKLQYISELERSVTTLQTEVSA 267 (363)
Q Consensus 231 RR~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~ 267 (363)
++|-.-|----++-+++++ .++|+.+......+-..
T Consensus 7 ~kmt~~Rk~~Lk~lll~kA-~e~L~~E~e~k~eeKkk 42 (182)
T 1ytz_I 7 RRAATARRQHLKSAMLQLA-VTEIEKEAAAKEVEKQN 42 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3444444444444444444 35666666555555443
No 310
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=23.19 E-value=3.8e+02 Score=23.49 Aligned_cols=10 Identities=10% Similarity=-0.190 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 037696 254 LERSVTTLQT 263 (363)
Q Consensus 254 LE~kV~~Lq~ 263 (363)
||.+...|..
T Consensus 38 le~e~~kl~~ 47 (146)
T 2xnx_M 38 KELEEKKKAL 47 (146)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 311
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=23.18 E-value=4.3e+02 Score=24.07 Aligned_cols=9 Identities=11% Similarity=0.213 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 037696 311 KKEIERLRQ 319 (363)
Q Consensus 311 kkEIerLRq 319 (363)
+.++..++.
T Consensus 142 ~~~l~~a~~ 150 (369)
T 4dk0_A 142 EIEVNTAET 150 (369)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444433
No 312
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=23.07 E-value=4.3e+02 Score=24.05 Aligned_cols=31 Identities=16% Similarity=0.299 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 244 RVRKLQYISELERSVTTLQTEVSALSPRVAF 274 (363)
Q Consensus 244 R~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~ 274 (363)
+.||.+-|+-|.+++..|+.|-..|..++..
T Consensus 14 ~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~ 44 (190)
T 3thf_A 14 KQKMDELIKHLNQKIVSLKREQQTISEECSA 44 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888899999999888887777766543
No 313
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=22.89 E-value=1.4e+02 Score=25.77 Aligned_cols=14 Identities=21% Similarity=0.214 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVS 266 (363)
Q Consensus 253 ELE~kV~~Lq~ENs 266 (363)
.||.++..++....
T Consensus 4 ~l~~~~~~~~~~~~ 17 (192)
T 2gkw_A 4 LLESQLSRHDQMLS 17 (192)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444333
No 314
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=22.83 E-value=1.7e+02 Score=22.38 Aligned_cols=9 Identities=33% Similarity=0.372 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 037696 311 KKEIERLRQ 319 (363)
Q Consensus 311 kkEIerLRq 319 (363)
+.||.++-.
T Consensus 57 KDeI~~lL~ 65 (76)
T 1zhc_A 57 KDEIHSMII 65 (76)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334433333
No 315
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=22.66 E-value=2.8e+02 Score=29.10 Aligned_cols=22 Identities=36% Similarity=0.357 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 037696 247 KLQYISELERSVTTLQTEVSAL 268 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~L 268 (363)
+-.-+++|++++..|+.|...|
T Consensus 399 ~p~~l~~~~~~~~~~~~~~~~~ 420 (854)
T 1qvr_A 399 APEEIDALERKKLQLEIEREAL 420 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777665443
No 316
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor); four-helix-bundle, chaperone; 2.20A {Saccharomyces cerevisiae} SCOP: a.7.5.1
Probab=22.65 E-value=3.2e+02 Score=22.32 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 286 NSALKQRIAALAQDKIFKDAHQEALKKEIERLRQVY 321 (363)
Q Consensus 286 N~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql~ 321 (363)
.-.||++...|.....+-.-....|...+..|...+
T Consensus 45 ey~iKkq~evl~Et~~mipd~~~Rl~~a~~~L~~~l 80 (106)
T 1qsd_A 45 PYDLKKQEEVLDDTKRLLPTLYEKIREFKEDLEQFL 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 345666666665555444444556666666666665
No 317
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=22.48 E-value=3.3e+02 Score=22.54 Aligned_cols=46 Identities=17% Similarity=0.243 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----------HHHHHHHHHHHHHHHHh
Q 037696 277 HQRLILNVDNSALKQRIAALAQDKIFKDA-----------HQEALKKEIERLRQVYH 322 (363)
Q Consensus 277 qq~~~L~~EN~~LKqrL~~L~qe~~~KeA-----------~~E~LkkEIerLRql~~ 322 (363)
+-++.|..|-+.||.++..+-.....+.. +-+.....|..||..++
T Consensus 42 rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~rns~DI~~ire~fq 98 (101)
T 4aj5_1 42 RILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLMEKNSMDIMKIREYFQ 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455666666666666655443333222 23344455666665554
No 318
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=22.37 E-value=4.7e+02 Score=32.15 Aligned_cols=71 Identities=17% Similarity=0.170 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDHQRLILNVD-------NSALKQRIAALAQ---DKIFKDAHQEALKKEIERLRQVY 321 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~E-------N~~LKqrL~~L~q---e~~~KeA~~E~LkkEIerLRql~ 321 (363)
-+||.+-..|-.++.+.+.++..|+.+...+..+ |..|=.-|+.... +...|-.+.|..+.+|+..|..|
T Consensus 2142 PdLE~~r~~Li~~~~~~k~~Lk~lEd~lL~~Ls~s~GniLdd~~lI~~L~~sK~~a~eI~~kl~~a~~t~~~I~~~R~~Y 2221 (2695)
T 4akg_A 2142 AEMQRKREDLIKLNTEYKLKLKNLEKRLLEELNNSQGNMLENDELMVTLNNLKKEAMNIEKKLSESEEFFPQFDNLVEEY 2221 (2695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5788888888888888888888888877765543 4444443333221 22223334478889999999877
Q ss_pred h
Q 037696 322 H 322 (363)
Q Consensus 322 ~ 322 (363)
-
T Consensus 2222 r 2222 (2695)
T 4akg_A 2222 S 2222 (2695)
T ss_dssp H
T ss_pred H
Confidence 5
No 319
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=22.06 E-value=2.3e+02 Score=20.60 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 037696 310 LKKEIERLRQVY 321 (363)
Q Consensus 310 LkkEIerLRql~ 321 (363)
|..||...|.++
T Consensus 40 Le~EIatYRkLL 51 (59)
T 1gk6_A 40 LDIEIATYRKLL 51 (59)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 445555555544
No 320
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=21.72 E-value=72 Score=23.68 Aligned_cols=23 Identities=17% Similarity=0.249 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037696 248 LQYISELERSVTTLQTEVSALSP 270 (363)
Q Consensus 248 kqyIeELE~kV~~Lq~ENs~Ls~ 270 (363)
..|++.|+.+|..|+.....|..
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 45889999999988877666543
No 321
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil, hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Probab=21.59 E-value=5.1e+02 Score=24.36 Aligned_cols=68 Identities=9% Similarity=-0.017 Sum_probs=45.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 232 RILANRQSAQRSRVRKLQYISELERSVTTLQTEVSALSPRVAFL-----DHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 232 R~LsNRESAqRSR~RKkqyIeELE~kV~~Lq~ENs~Ls~ela~L-----~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
+-|.+++...-+.++..+|-++.+.+-..+...+..|..=+... ..-......|+.+|+.+++....+
T Consensus 77 ~el~~~q~~el~~l~~~q~~eE~~~k~~Hl~eq~~~Lk~l~~e~Q~~QmK~Lk~~~ErE~KELkk~q~kks~e 149 (251)
T 1jad_A 77 VELKERLEMELIHLGEEYHDGIRRRKEQHATEQTAKITELAREKQIAELKALKESSESNIKDIKKKLEAKRLD 149 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777788888888888888888888777777665433322 222234467888888888755444
No 322
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=21.38 E-value=48 Score=32.11 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 037696 251 ISELERSVTTLQTEVSALSPRVA 273 (363)
Q Consensus 251 IeELE~kV~~Lq~ENs~Ls~ela 273 (363)
|..||.+|..++.+...|...+.
T Consensus 6 ~~~lE~~Il~~~~~i~~L~~~l~ 28 (319)
T 1fzc_C 6 IMKYEASILTHDSSIRYLQEIYN 28 (319)
T ss_dssp ----CTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhChHHHHHHHHHHHH
Confidence 44455555555444444443333
No 323
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=21.35 E-value=1.7e+02 Score=22.38 Aligned_cols=26 Identities=8% Similarity=0.160 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 252 SELERSVTTLQTEVSALSPRVAFLDH 277 (363)
Q Consensus 252 eELE~kV~~Lq~ENs~Ls~ela~L~q 277 (363)
+....+.+.|+.+...+..++..|++
T Consensus 5 ~aiKkkmqaLk~Ekdna~e~~e~lE~ 30 (75)
T 3mtu_A 5 DAIKKKMQMLKLDKENALDRAEQAEA 30 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555555444443
No 324
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=21.32 E-value=4.5e+02 Score=25.59 Aligned_cols=57 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 037696 264 EVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQDKIFKDAHQEALKKEIERLRQV 320 (363)
Q Consensus 264 ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe~~~KeA~~E~LkkEIerLRql 320 (363)
|...|......|..+...|..--..|.+.|..........+.....|+-|+..||..
T Consensus 199 e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~ql~k~ 255 (373)
T 3hhm_B 199 EIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQLRKT 255 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHH
No 325
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=21.24 E-value=3.6e+02 Score=22.51 Aligned_cols=7 Identities=43% Similarity=0.681 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 037696 290 KQRIAAL 296 (363)
Q Consensus 290 KqrL~~L 296 (363)
+.+|..|
T Consensus 44 k~qV~~L 50 (112)
T 1x79_B 44 SHQISAL 50 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 326
>3mq1_A Mite allergen DER P 5; DUST mite; HET: MRD MPD; 2.80A {Dermatophagoides pteronyssinus}
Probab=21.09 E-value=2.6e+02 Score=23.31 Aligned_cols=9 Identities=22% Similarity=0.501 Sum_probs=4.8
Q ss_pred HHHHHHHHH
Q 037696 285 DNSALKQRI 293 (363)
Q Consensus 285 EN~~LKqrL 293 (363)
.++++|.+|
T Consensus 34 KsKe~K~~I 42 (103)
T 3mq1_A 34 PTKEMKDKI 42 (103)
T ss_dssp CCHHHHHHH
T ss_pred CcHHHHHHH
Confidence 455555554
No 327
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=20.87 E-value=2.1e+02 Score=25.82 Aligned_cols=32 Identities=22% Similarity=0.090 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 247 KLQYISELERSVTTLQTEVSALSPRVAFLDHQ 278 (363)
Q Consensus 247 KkqyIeELE~kV~~Lq~ENs~Ls~ela~L~qq 278 (363)
=...+.+|..++..|+.+|..|+.+.....++
T Consensus 150 ~ld~~~~L~~~n~~LqkeNeRL~~E~n~~l~q 181 (184)
T 3w03_C 150 CLDTIAENQAKNEHLQKENERLLRDWNDVQGR 181 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999998887766544
No 328
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=20.68 E-value=88 Score=26.16 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037696 253 ELERSVTTLQTEVSALSPRVAFLDHQR 279 (363)
Q Consensus 253 ELE~kV~~Lq~ENs~Ls~ela~L~qq~ 279 (363)
+|..+|..|..|+..|..++..|..+.
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666655555555443
No 329
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=20.41 E-value=3.2e+02 Score=21.56 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 037696 265 VSALSPRVAFLDHQRLILNVDNSALKQRIAALAQD 299 (363)
Q Consensus 265 Ns~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~qe 299 (363)
......++..|.+-...|..--..|..-|..|.++
T Consensus 20 ~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E 54 (78)
T 3iv1_A 20 MDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQE 54 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33334444444444455555555555555555554
No 330
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=20.13 E-value=4.8e+02 Score=26.96 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 037696 255 ERSVTTLQTEVSALSPRVAFLDHQRLILNVDNSALKQRIAALAQ 298 (363)
Q Consensus 255 E~kV~~Lq~ENs~Ls~ela~L~qq~~~L~~EN~~LKqrL~~L~q 298 (363)
+..+..|..+...+..++..+......|...-..++.+|..+..
T Consensus 351 ~~~l~~l~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~ 394 (695)
T 2j69_A 351 ARRIPLLEQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRD 394 (695)
T ss_dssp HHHHHHHTSCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555566666555555555555555555555443
Done!