BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037697
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2UVD|A Chain A, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|B Chain B, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|C Chain C, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|D Chain D, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|E Chain E, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|F Chain F, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|G Chain G, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
pdb|2UVD|H Chain H, The Crystal Structure Of A 3-Oxoacyl-(Acyl Carrier
Protein) Reductase From Bacillus Anthracis (Ba3989)
Length = 246
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 14/52 (26%)
Query: 48 EIYRQIDLVVNVAAITK-------FDERYDALLDTNTMGAFHVLSFAKHCTK 92
+++ Q+D++VN A +TK +E +D +++TN G F CTK
Sbjct: 78 DVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVF-------LCTK 122
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 28.5 bits (62), Expect = 1.2, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 99 RMAMRESGMEL------DSFNFDPKSIDWEDYFLNVH 129
++ M S ME D F FDPK + E++F+++H
Sbjct: 353 KLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLH 389
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 99 RMAMRESGMEL------DSFNFDPKSIDWEDYFLNVH 129
++ M S ME D F FDPK + E++F+++H
Sbjct: 334 KLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLH 370
>pdb|2EHD|A Chain A, Crystal Structure Analysis Of Oxidoreductase
pdb|2EHD|B Chain B, Crystal Structure Analysis Of Oxidoreductase
Length = 234
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 23 LEKVAAVPGDILYEDLGIKDSNLKEEIYRQIDLVVNVAAITKFD-------ERYDALLDT 75
LE +PGD+ E + EE + ++ +VN A + E + +LDT
Sbjct: 49 LEGALPLPGDVREEGDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDT 108
Query: 76 NTMGAF 81
N GAF
Sbjct: 109 NLTGAF 114
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 99 RMAMRESGMEL------DSFNFDPKSIDWEDYFLNVH 129
++ M S ME D F FDPK + E++F+++H
Sbjct: 263 KLRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLH 299
>pdb|2BTV|A Chain A, Atomic Model For Bluetongue Virus (Btv) Core
pdb|2BTV|B Chain B, Atomic Model For Bluetongue Virus (Btv) Core
Length = 901
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 15 GDRLDSFILEKVAAVPGDILYEDLGIKDSNLKEEIYRQIDLVVN 58
G+R+D + VA V G +L+ G + +NL + + RQ+D+ +N
Sbjct: 362 GERMDPAV-RMVAGVVGHLLFT-AGGRFTNLTQNMARQLDIALN 403
>pdb|2E7Z|A Chain A, Acetylene Hydratase From Pelobacter Acetylenicus
Length = 727
Score = 26.9 bits (58), Expect = 3.5, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 93 IQMLKVRMAMRE-----SGMELDSFNFDPKSIDWEDY 124
I+ L VRM + E +EL ++ P ++WE+Y
Sbjct: 495 IRELAVRMGLEEHFPWKDRLELINYRISPTGMEWEEY 531
>pdb|4AEZ|B Chain B, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|E Chain E, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|H Chain H, Crystal Structure Of Mitotic Checkpoint Complex
Length = 203
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 78 MGAFHVLSFAKHCTKIQMLKVRMAMRESGMELDSFNFDPKSIDWEDYFLNV 128
+ H FAK KIQ L + + + SG +L+ + F+ + +D D F N+
Sbjct: 68 VSQLHKWMFAK---KIQKLILVITSKCSGEDLERWQFNVEMVDTADQFQNI 115
>pdb|2H07|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
pdb|2H07|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant S132a
Length = 326
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 61 AITKFDER-YDALLDTNTMGAFHVLSFAKHCTKIQMLKVRMAMRES 105
AI++ + ++A++ TNT+ + KHC+KIQ++ + M + E+
Sbjct: 257 AISRINNACFEAVVVTNTIPQEDKM---KHCSKIQVIDISMILAEA 299
>pdb|2H08|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
pdb|2H08|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 Mutant Y146m
Length = 326
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 61 AITKFDER-YDALLDTNTMGAFHVLSFAKHCTKIQMLKVRMAMRES 105
AI++ + ++A++ TNT+ + KHC+KIQ++ + M + E+
Sbjct: 257 AISRINNACFEAVVVTNTIPQEDKM---KHCSKIQVIDISMILAEA 299
>pdb|2H06|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2H06|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|2HCR|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|2HCR|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1 In Complex With Amp(Atp), Cadmium And
Sulfate Ion
pdb|3EFH|A Chain A, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3EFH|B Chain B, Crystal Structure Of Human Phosphoribosyl Pyrophosphate
Synthetase 1
pdb|3S5J|B Chain B, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
pdb|3S5J|A Chain A, 2.0a Crystal Structure Of Human Phosphoribosyl
Pyrophosphate Synthetase 1
Length = 326
Score = 26.2 bits (56), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 61 AITKFDER-YDALLDTNTMGAFHVLSFAKHCTKIQMLKVRMAMRES 105
AI++ + ++A++ TNT+ + KHC+KIQ++ + M + E+
Sbjct: 257 AISRINNACFEAVVVTNTIPQEDKM---KHCSKIQVIDISMILAEA 299
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 26.2 bits (56), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 59 VAAITKFDERYDALLDTNTMGAFHVLSFA 87
V KFDE Y+ L +T T+G LS++
Sbjct: 69 VVKFKKFDEIYEILKNTETLGIEGTLSYS 97
>pdb|3SJ7|A Chain A, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From
Staphylococcus Aureus Complex With Nadph
pdb|3SJ7|B Chain B, Structure Of Beta-Ketoacetyl-Coa Reductase (Fabg) From
Staphylococcus Aureus Complex With Nadph
Length = 252
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 11/57 (19%)
Query: 50 YRQIDLVVNVAAITK-------FDERYDALLDTNTMGAFHVLSFAKHCTKIQMLKVR 99
+ +D++VN A IT+ ++ +D ++DTN G F+ + A QML+ R
Sbjct: 86 FGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATP----QMLRQR 138
>pdb|3CU2|A Chain A, Crystal Structure Of Ribulose-5-phosphate 3-epimerase
(yp_718263.1) From Haemophilus Somnus 129pt At 1.91 A
Resolution
pdb|3CU2|B Chain B, Crystal Structure Of Ribulose-5-phosphate 3-epimerase
(yp_718263.1) From Haemophilus Somnus 129pt At 1.91 A
Resolution
Length = 237
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 37 DLGIKDSN---LKEEIYRQIDLVVNVAAITKFDERYDALLDTNTMGAFHVLSFAKHCTKI 93
+GI +N L EE+ ++ +NV D ++ +L T+GA + F HC K
Sbjct: 17 SVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLF---TVGAIGIKYFPTHCFKD 73
Query: 94 QMLKVR 99
L VR
Sbjct: 74 VHLXVR 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,080,155
Number of Sequences: 62578
Number of extensions: 153206
Number of successful extensions: 483
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 19
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 46 (22.3 bits)