BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037697
(139 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0WRB0|FACR5_ARATH Probable fatty acyl-CoA reductase 5 OS=Arabidopsis thaliana GN=FAR5
PE=2 SV=1
Length = 496
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Query: 1 VIEKDLFRVLRDTWGD-RLDSFILEKVAAVPGDILYEDLGIKDSNLKEEIYRQIDLVVNV 59
V EK+LF+VLR GD +L++ + EKV +VPGDI + LGI DS+L+E + ++ID+VVNV
Sbjct: 61 VFEKELFKVLRQNLGDEKLNTLLYEKVVSVPGDIATDQLGINDSHLRERMQKEIDIVVNV 120
Query: 60 AAITKFDERYDALLDTNTMGAFHVLSFAKHCTKIQML 96
AA T FDERYD L NT GA +VL+FAK C K+Q+L
Sbjct: 121 AATTNFDERYDVGLGINTFGALNVLNFAKKCVKVQLL 157
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 112 FNFDPKSIDWEDYFLNVHIPGLLRYAVK 139
F+FDPK I+W DY N+HI GL+ + +K
Sbjct: 468 FDFDPKGINWGDYLTNIHISGLVTHVLK 495
>sp|Q1PEI6|FACR8_ARATH Fatty acyl-CoA reductase 8 OS=Arabidopsis thaliana GN=FAR8 PE=2
SV=1
Length = 496
Score = 112 bits (279), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 71/95 (74%), Gaps = 1/95 (1%)
Query: 3 EKDLFRVLRDTWGD-RLDSFILEKVAAVPGDILYEDLGIKDSNLKEEIYRQIDLVVNVAA 61
EKDLF+VLRD GD +L++ + EKV V GDI + LG+KDSNL+E + ++ID+VVNVAA
Sbjct: 63 EKDLFKVLRDNLGDEKLNTLLSEKVVPVAGDIAMDHLGMKDSNLRERMQKEIDIVVNVAA 122
Query: 62 ITKFDERYDALLDTNTMGAFHVLSFAKHCTKIQML 96
T FDERYD L NT GA +VL+FAK C K Q+L
Sbjct: 123 TTNFDERYDIGLGINTFGALNVLNFAKKCVKAQLL 157
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 112 FNFDPKSIDWEDYFLNVHIPGLLRYAVK 139
F+FDPK I W+DY +NVHIPGL+ + +K
Sbjct: 468 FDFDPKIIKWKDYLINVHIPGLITHVLK 495
>sp|Q9LXN3|FACR4_ARATH Probable fatty acyl-CoA reductase 4 OS=Arabidopsis thaliana GN=FAR4
PE=2 SV=1
Length = 493
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 71/97 (73%), Gaps = 1/97 (1%)
Query: 1 VIEKDLFRVLRDTWGDR-LDSFILEKVAAVPGDILYEDLGIKDSNLKEEIYRQIDLVVNV 59
V+EKDLFRVL++ GD L +FI EKV +PGDI ++LG+K S+L + ++ +ID++VNV
Sbjct: 61 VLEKDLFRVLKNALGDENLKAFITEKVVPIPGDISVDNLGVKGSDLLQHMWNEIDIIVNV 120
Query: 60 AAITKFDERYDALLDTNTMGAFHVLSFAKHCTKIQML 96
AA T FDERYD L NT G +VL+FAK C K Q+L
Sbjct: 121 AATTNFDERYDVGLSVNTFGPLNVLNFAKKCVKGQLL 157
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 97 KVRMAMRESGMELDS-FNFDPKSIDWEDYFLNVHIPGLLRYAVK 139
K+R+ +E E+ F FDPKSIDWEDY +HIPGL+ Y +K
Sbjct: 449 KLRLKRKEINKEMYGLFEFDPKSIDWEDYMTTIHIPGLITYVLK 492
>sp|Q93ZB9|FACR3_ARATH Fatty acyl-CoA reductase 3 OS=Arabidopsis thaliana GN=FAR3 PE=2
SV=1
Length = 493
Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 70/96 (72%)
Query: 1 VIEKDLFRVLRDTWGDRLDSFILEKVAAVPGDILYEDLGIKDSNLKEEIYRQIDLVVNVA 60
+++KDLF+VL++ +G L+ EK+ V GDI EDLG++D +L E+ Q+D +VN+A
Sbjct: 66 ILKKDLFKVLKEKYGPNLNQLTSEKITIVDGDICLEDLGLQDFDLAHEMIHQVDAIVNLA 125
Query: 61 AITKFDERYDALLDTNTMGAFHVLSFAKHCTKIQML 96
A TKFDERYD L NT+GA +VL+FAK C K+++L
Sbjct: 126 ATTKFDERYDVALGINTLGALNVLNFAKRCAKVKIL 161
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 31/40 (77%)
Query: 97 KVRMAMRESGMELDSFNFDPKSIDWEDYFLNVHIPGLLRY 136
K+R + ++G+E + F FDPK +DW+DYFLN H+ GLL+Y
Sbjct: 452 KLRKMVSKTGVENEMFYFDPKVLDWDDYFLNTHVIGLLKY 491
>sp|Q39152|FACR1_ARATH Fatty acyl-CoA reductase 1 OS=Arabidopsis thaliana GN=FAR1 PE=2
SV=1
Length = 491
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/97 (50%), Positives = 72/97 (74%), Gaps = 1/97 (1%)
Query: 1 VIEKDLFRVLRDTWG-DRLDSFILEKVAAVPGDILYEDLGIKDSNLKEEIYRQIDLVVNV 59
V+E DLF+VLR+ G D L++ + EK+ VPGDI ++LG+KD++L + ++ +ID+++N+
Sbjct: 61 VMEIDLFKVLRNNLGEDNLNALMREKIVPVPGDISIDNLGLKDTDLIQRMWSEIDIIINI 120
Query: 60 AAITKFDERYDALLDTNTMGAFHVLSFAKHCTKIQML 96
AA T FDERYD L NT GA +VL+FAK C K Q+L
Sbjct: 121 AATTNFDERYDIGLGINTFGALNVLNFAKKCVKGQLL 157
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 97 KVRMAMRESGMELD-SFNFDPKSIDWEDYFLNVHIPGLLRYAVK 139
++RM +E+ ELD SF FDPKSIDW++Y N HIPGL+ + +K
Sbjct: 447 RLRMKRKENIKELDGSFEFDPKSIDWDNYITNTHIPGLITHVLK 490
>sp|Q9XGY7|FAR_SIMCH Alcohol-forming fatty acyl-CoA reductase OS=Simmondsia chinensis
PE=1 SV=1
Length = 493
Score = 102 bits (254), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 52/96 (54%), Positives = 66/96 (68%)
Query: 1 VIEKDLFRVLRDTWGDRLDSFILEKVAAVPGDILYEDLGIKDSNLKEEIYRQIDLVVNVA 60
V K+LF+VL+ G SF+ EKV VPGDI EDL +KD NLKEE++R+ID+VVN+A
Sbjct: 63 VFGKELFKVLKQNLGANFYSFVSEKVTVVPGDITGEDLCLKDVNLKEEMWREIDVVVNLA 122
Query: 61 AITKFDERYDALLDTNTMGAFHVLSFAKHCTKIQML 96
A F ERYD L NT GA +VL FAK C K+++
Sbjct: 123 ATINFIERYDVSLLINTYGAKYVLDFAKKCNKLKIF 158
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 32/42 (76%)
Query: 97 KVRMAMRESGMELDSFNFDPKSIDWEDYFLNVHIPGLLRYAV 138
K+R+A +ES +E D F FDP++I+WEDYFL H PG++ + +
Sbjct: 451 KLRIAAKESIVEADMFYFDPRAINWEDYFLKTHFPGVVEHVL 492
>sp|B9TSP7|FACR6_ARATH Fatty acyl-CoA reductase 6, chloroplastic OS=Arabidopsis thaliana
GN=FAR6 PE=2 SV=1
Length = 548
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 58/96 (60%), Gaps = 1/96 (1%)
Query: 1 VIEKDLFRVLRDTWGDRLDSFILEKVAAVPGDILYEDLGIKDSNLKEEIYRQIDLVVNVA 60
+I DLF++L+ G ++F+ K+ V GDI ++LGIK S + I +ID++++
Sbjct: 133 IISSDLFKLLKQMHGSSYEAFMKRKLIPVIGDIEEDNLGIK-SEIANMISEEIDVIISCG 191
Query: 61 AITKFDERYDALLDTNTMGAFHVLSFAKHCTKIQML 96
T FD+RYD+ L N +G +LSF K C K+++
Sbjct: 192 GRTTFDDRYDSALSVNALGPGRLLSFGKGCRKLKLF 227
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 91 TKIQMLKVRMAMRESGMELDSFNFDPKSIDWEDYFLNVHIPGL 133
T L M+M E +F FD K IDWE Y +NVH+PGL
Sbjct: 499 TNTTSLIQEMSMEEK----KTFGFDIKGIDWEHYIVNVHLPGL 537
>sp|Q08891|FACR2_ARATH Fatty acyl-CoA reductase 2 OS=Arabidopsis thaliana GN=FAR2 PE=2
SV=2
Length = 616
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 58/87 (66%), Gaps = 1/87 (1%)
Query: 1 VIEKDLFRVLRDTWGDRLDSFILEKVAAVPGDILYEDLGIKDSNLKEEIYRQIDLVVNVA 60
V++ +LF L++T G SF+L K+ V G+I ++G++ ++ EEI +++D+++N A
Sbjct: 180 VLDAELFNTLKETHGASYMSFMLTKLIPVTGNICDSNIGLQ-ADSAEEIAKEVDVIINSA 238
Query: 61 AITKFDERYDALLDTNTMGAFHVLSFA 87
A T F+ERYD LD NT G +++ FA
Sbjct: 239 ANTTFNERYDVALDINTRGPGNLMGFA 265
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 108 ELDSFNFDPKSIDWEDYFLNVHIPGLLRYAVK 139
E F FD SI+W DY NVHIPGL R+ +K
Sbjct: 582 EKREFGFDVGSINWTDYITNVHIPGLRRHVLK 613
>sp|A1ZAI5|FACR1_DROME Putative fatty acyl-CoA reductase CG5065 OS=Drosophila melanogaster
GN=CG5065 PE=3 SV=1
Length = 625
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 23 LEKVAAVPGDILYEDLGI--KDSNLKEEIYRQIDLVVNVAAITKFDERYDALLDTNTMG 79
L KV + GDI E+LGI KD NL + R + +V + AA KFDE+ + N +G
Sbjct: 191 LSKVIPISGDITSEELGISEKDQNL---LCRNVSVVFHSAATVKFDEKLKLSVTINMLG 246
>sp|Q9FMQ9|FACR7_ARATH Putative fatty acyl-CoA reductase 7 OS=Arabidopsis thaliana
GN=FAR7 PE=3 SV=1
Length = 409
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 29/46 (63%)
Query: 51 RQIDLVVNVAAITKFDERYDALLDTNTMGAFHVLSFAKHCTKIQML 96
+++ L+V + ++RYD L NT GA +VL+FAK C K ++L
Sbjct: 39 KRLYLLVRASDKKSAEQRYDVALGINTFGAINVLNFAKKCVKPKLL 84
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 12/15 (80%)
Query: 112 FNFDPKSIDWEDYFL 126
F +PK IDWEDYF+
Sbjct: 388 FGTNPKCIDWEDYFM 402
>sp|P36370|TAP1_RAT Antigen peptide transporter 1 OS=Rattus norvegicus GN=Tap1 PE=1
SV=2
Length = 725
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 14 WGDRLDSFILEKVAAVPGDILYEDLG 39
W RLD+F+L VAA+P L+ LG
Sbjct: 110 WNSRLDAFVLSYVAALPAAALWHKLG 135
>sp|Q55CN6|PKS3_DICDI Probable polyketide synthase 3 OS=Dictyostelium discoideum GN=pks3
PE=3 SV=1
Length = 2837
Score = 32.7 bits (73), Expect = 0.64, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 23 LEKVAAVPGDILYEDLGIKDSNLKEEIYRQIDLVVNVAAITKFDERYDALLDTN--TMGA 80
LEK+ V GD+ LG+ D + EI Q++L+++ A + YD + TN +
Sbjct: 2529 LEKIFPVRGDLRKSKLGLSD-KMYLEISNQVNLILSCGADINLNANYDEIKPTNVDSTKE 2587
Query: 81 FHVLSFAKHCTK 92
F LS +K K
Sbjct: 2588 FIKLSVSKGTNK 2599
>sp|A1EGX6|FSCB_MOUSE Fibrous sheath CABYR-binding protein OS=Mus musculus GN=Fscb PE=1
SV=1
Length = 1074
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 18 LDSF---ILEKVAAVPGDILYEDLGIKDSNLKEE 48
LD F +LEKV A+ D + EDLGI +S + EE
Sbjct: 347 LDPFSEEVLEKVQALTTDSMLEDLGIAESTIAEE 380
>sp|Q5HLD8|Y2049_STAEQ Uncharacterized oxidoreductase SERP2049 OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP2049 PE=3
SV=1
Length = 230
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 30 PGDILYEDLGIK---DSNLKEEI--YRQIDLVVNVAA------ITKFD-ERYDALLDTNT 77
P ++ D+ +K D LK I + ID+VVN A IT ++ E++D ++D N
Sbjct: 53 PAKVVSADVTVKSNIDDMLKAVIDHFGHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNI 112
Query: 78 MGAFHVL 84
G HVL
Sbjct: 113 KGTLHVL 119
>sp|Q8CN40|Y2036_STAES Uncharacterized oxidoreductase SE_2036 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_2036 PE=3 SV=1
Length = 230
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 12/67 (17%)
Query: 30 PGDILYEDLGIK---DSNLKEEI--YRQIDLVVNVAA------ITKFD-ERYDALLDTNT 77
P ++ D+ +K D LK I + ID+VVN A IT ++ E++D ++D N
Sbjct: 53 PAKVVSADVTVKSNIDDMLKAVIDHFGHIDIVVNSAGQSLSSKITDYNVEQWDTMIDVNI 112
Query: 78 MGAFHVL 84
G HVL
Sbjct: 113 KGTLHVL 119
>sp|Q5ZM72|FACR1_CHICK Fatty acyl-CoA reductase 1 OS=Gallus gallus GN=FAR1 PE=2 SV=1
Length = 515
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 24 EKVAAVPGDILYEDLGIKDSNLKEEIYRQIDLVVNVAAITKFDERYDALLDTNTMGAFHV 83
EK+ + ++ +L + + +KE++ I+++ + AA +F+E + N + +
Sbjct: 77 EKIIVITSELTQPELDLSNP-VKEKLIECINIIFHCAATVRFNETLRDAVQLNVLSTKQL 135
Query: 84 LSFAKHCTKIQML 96
LS A+ T +++
Sbjct: 136 LSLAQQMTNLEVF 148
>sp|P44433|RLUC_HAEIN Ribosomal large subunit pseudouridine synthase C OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rluC PE=3 SV=1
Length = 322
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 6 LFRVLRDTWGDRLDSFILEKVAAVPGDILYE-----DLGIKDSNLKEEIYRQIDLVVNVA 60
+ + D G R+D+++L K+ VP ++Y ++ + +K E Q VV +
Sbjct: 15 MLTISEDESGQRIDNYLLAKLKGVPKSLIYRIVRKGEVRVNKGRIKPEYKLQTGDVVRIP 74
Query: 61 AITKFDERYDALLDTN 76
+ + E+ DA + N
Sbjct: 75 PV-RVAEKNDAPISKN 89
>sp|Q9X248|FABG_THEMA 3-oxoacyl-[acyl-carrier-protein] reductase FabG OS=Thermotoga
maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM
10099) GN=fabG PE=3 SV=1
Length = 246
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 15/82 (18%)
Query: 16 DRLDSFILEKVAAVPGDILYEDLGIKDSNLKEEI-------YRQIDLVVNVAAITK---- 64
+ LDS + E +PG + L + D + +E+ Y +ID++VN A IT+
Sbjct: 40 ENLDSLVKE-AEGLPGKVDPYVLNVTDRDQIKEVVEKVVQKYGRIDVLVNNAGITRDALL 98
Query: 65 ---FDERYDALLDTNTMGAFHV 83
+E +DA+++ N G F+V
Sbjct: 99 VRMKEEDWDAVINVNLKGVFNV 120
>sp|Q9D0L7|ARM10_MOUSE Armadillo repeat-containing protein 10 OS=Mus musculus GN=Armc10
PE=1 SV=1
Length = 306
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 69 YDALLDTNTMGAFHVLSFAKHCTKIQMLKVRMAMRES 105
Y LL + G FH+L TK+Q+LK+ + + E+
Sbjct: 175 YQHLLSGSVAGLFHLLLLGNGSTKVQVLKLLLNLSEN 211
>sp|Q0P5J1|FACR2_BOVIN Fatty acyl-CoA reductase 2 OS=Bos taurus GN=FAR2 PE=2 SV=1
Length = 515
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Query: 24 EKVAAVPGDILYEDLGIKDSNLKEEIYRQIDLVVNVAAITKFDERYDALLDTNTMGAFHV 83
EK+ A+ D+ D I ++K E+ +++ + AA +FD+ + N +
Sbjct: 77 EKIRAISADLNQNDFAISKEDMK-ELLSHTNIIFHCAATVRFDDHLRHAVQLNVTATQQL 135
Query: 84 LSFAKHCTKIQ 94
L A K++
Sbjct: 136 LLMASQMPKLE 146
>sp|Q3SJR2|GLMM_THIDA Phosphoglucosamine mutase OS=Thiobacillus denitrificans (strain
ATCC 25259) GN=glmM PE=3 SV=1
Length = 458
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 82 HVLSFAKHCTK---IQMLKVRMAMRESGMELDSFNFD 115
H+L KH T + L+V A+RE+G LD+F D
Sbjct: 335 HILCLDKHTTGDGIVSSLQVLRALRETGKTLDAFTAD 371
>sp|Q54B51|PKS44_DICDI Probable polyketide synthase 44 OS=Dictyostelium discoideum GN=pks44
PE=3 SV=1
Length = 3078
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Query: 23 LEKVAAVPGDILYEDLGIKDSNLKEEIYRQIDLVVNVAAITKFDERYDALLDTNTMGAFH 82
+ K+ V GD + G+ I +DL++N AA + Y+ + G
Sbjct: 2756 INKIKPVLGDYTLDSFGLSVDQYTN-ISNNVDLIINSAASVNYQMGYEDSKVESVEGVLQ 2814
Query: 83 VLSFAKHCTKIQMLKVR---MAMRESGMELDSFNF---DPKSIDWEDYFLNVHIPG 132
L F+ H ++ +V + + LD + F DPK I ++ +N ++ G
Sbjct: 2815 CLRFSCHNKLKKLFQVSTLGIYSDDKRDNLDDYTFAQIDPKIIQSKNSIINGYLQG 2870
>sp|P59835|RLUC_HAEDU Ribosomal large subunit pseudouridine synthase C OS=Haemophilus
ducreyi (strain 35000HP / ATCC 700724) GN=rluC PE=3
SV=1
Length = 320
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 5 DLFRVLRDTWGDRLDSFILEKVAAVPGDILY 35
F + D G RLD+F+L K+ VP ++Y
Sbjct: 12 QFFTISDDEAGQRLDNFLLAKLKGVPKSLIY 42
>sp|Q9CM51|RLUC_PASMU Ribosomal large subunit pseudouridine synthase C OS=Pasteurella
multocida (strain Pm70) GN=rluC PE=3 SV=1
Length = 326
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 6 LFRVLRDTWGDRLDSFILEKVAAVPGDILYE-----DLGIKDSNLKEEIYRQIDLVVNVA 60
+ + D G R+D+++L K+ VP ++Y ++ + +K E Q + +V V
Sbjct: 16 MLTISEDEAGQRIDNYLLAKLKGVPKSLIYRILRKGEVRVNKGRIKPEYKLQANDIVRVP 75
Query: 61 AITKFDERYDALLDTN 76
+ + E+ A + T
Sbjct: 76 PV-RVSEKEHAPISTK 90
>sp|P86392|VMPA_TITSE Snake venom metalloproteinase antarease (Fragments) OS=Tityus
serrulatus PE=1 SV=1
Length = 227
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%)
Query: 19 DSFILEKVAAVPGDILYEDLGIKDSNLKEEIYRQIDLVVNVAAITKFDERYDALLDTNTM 78
D+ I AA D+L + N + + + DL+ + A D R D +D NT
Sbjct: 62 DNLIPGPPAAFDPDVLISAMSKYYCNHQTGLAKDTDLIFLITARGMGDPREDGTVDINTA 121
Query: 79 GAFHVLSFAKHCTK 92
G + K C K
Sbjct: 122 GIANSAGVCKPCFK 135
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,485,128
Number of Sequences: 539616
Number of extensions: 1928222
Number of successful extensions: 6574
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 6538
Number of HSP's gapped (non-prelim): 45
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)