BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037698
(314 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Ser
pdb|1ZDG|A Chain A, Ser159 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 97/257 (37%), Gaps = 43/257 (16%)
Query: 3 SKRAYVTFLAGNGDYXXXXXXXXXXXRKAKSAYPLAVAVLPDVPADHRKIL--VSQGCIV 60
+ +A+VT L N Y ++ +++ LAV P V RK L V I
Sbjct: 22 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVIT 80
Query: 61 REIQPVYPPENQTQFAMAYYVINYSKLRIWEFVEYAKMIYLDGDIQVFENIDHLFELPNG 120
+I + T + +KL W +Y+K +++D D V NID LFE
Sbjct: 81 VDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE- 139
Query: 121 YLYAAMDCFCEKTWSNSPQYKIGYCQQCPEKVKWPASMGSPPPKYFNAGMFVYEPNLLTY 180
L AA D P + P FN+G+FVY+P++ TY
Sbjct: 140 -LSAAPD----------PGW----------------------PDCFNSGVFVYQPSVETY 166
Query: 181 SHLLETLKVTPPSSFAEQDFLNNFFR-----NIYKPISHTYNFVLAMLWRH-PXXXXXXX 234
+ LL S +Q LN FF +I K + YN ++ + P
Sbjct: 167 NQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGA 226
Query: 235 XXXXXYCASGSKPWRYT 251
+ +KPW YT
Sbjct: 227 NAKVVHFLGQTKPWNYT 243
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT
RESIDUE 270
Length = 291
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/257 (25%), Positives = 97/257 (37%), Gaps = 43/257 (16%)
Query: 3 SKRAYVTFLAGNGDYXXXXXXXXXXXRKAKSAYPLAVAVLPDVPADHRKIL--VSQGCIV 60
+ +A+VT L N Y ++ +++ LAV P V RK L V I
Sbjct: 22 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVIT 80
Query: 61 REIQPVYPPENQTQFAMAYYVINYSKLRIWEFVEYAKMIYLDGDIQVFENIDHLFELPNG 120
+I + T + +KL W +Y+K +++D D V NID LFE
Sbjct: 81 VDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE- 139
Query: 121 YLYAAMDCFCEKTWSNSPQYKIGYCQQCPEKVKWPASMGSPPPKYFNAGMFVYEPNLLTY 180
L AA D P + P FN+G+FVY+P++ TY
Sbjct: 140 -LSAAPD----------PGW----------------------PDCFNSGVFVYQPSVETY 166
Query: 181 SHLLETLKVTPPSSFAEQDFLNNFFR-----NIYKPISHTYNFVLAMLWRH-PXXXXXXX 234
+ LL S +Q LN FF +I K + YN ++ + P
Sbjct: 167 NQLLHVASEQGSFSGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIFSYLPAFKAFGA 226
Query: 235 XXXXXYCASGSKPWRYT 251
+ +KPW YT
Sbjct: 227 NAKVVHFLGQTKPWNYT 243
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is
Replaced By Asn
Length = 353
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 97/257 (37%), Gaps = 43/257 (16%)
Query: 3 SKRAYVTFLAGNGDYXXXXXXXXXXXRKAKSAYPLAVAVLPDVPADHRKIL--VSQGCIV 60
+ +A+VT L N Y ++ +++ LAV P V RK L V I
Sbjct: 22 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVIT 80
Query: 61 REIQPVYPPENQTQFAMAYYVINYSKLRIWEFVEYAKMIYLDGDIQVFENIDHLFELPNG 120
+I + T + +KL W +Y+K +++D D V NID LFE
Sbjct: 81 VDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE- 139
Query: 121 YLYAAMDCFCEKTWSNSPQYKIGYCQQCPEKVKWPASMGSPPPKYFNAGMFVYEPNLLTY 180
L AA D P + P FN+G+FVY+P++ TY
Sbjct: 140 -LSAAPD----------PGW----------------------PDCFNSGVFVYQPSVETY 166
Query: 181 SHLLETLKVTPPSSFAEQDFLNNFFR-----NIYKPISHTYNFVLAMLWRH-PXXXXXXX 234
+ LL + +Q LN FF +I K + YN ++ + P
Sbjct: 167 NQLLHVASEQGSFNGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGA 226
Query: 235 XXXXXYCASGSKPWRYT 251
+ +KPW YT
Sbjct: 227 NAKVVHFLGQTKPWNYT 243
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed
With Udp- Glucose And Manganese
pdb|1LL3|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 333
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 96/257 (37%), Gaps = 43/257 (16%)
Query: 3 SKRAYVTFLAGNGDYXXXXXXXXXXXRKAKSAYPLAVAVLPDVPADHRKIL--VSQGCIV 60
+ +A+VT L N Y ++ +++ LAV P V RK L V I
Sbjct: 2 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVIT 60
Query: 61 REIQPVYPPENQTQFAMAYYVINYSKLRIWEFVEYAKMIYLDGDIQVFENIDHLFELPNG 120
+I + T + +KL W +Y+K +++D D V NID LFE
Sbjct: 61 VDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE- 119
Query: 121 YLYAAMDCFCEKTWSNSPQYKIGYCQQCPEKVKWPASMGSPPPKYFNAGMFVYEPNLLTY 180
L AA D P + P FN+G+FVY+P++ TY
Sbjct: 120 -LSAAPD----------PGW----------------------PDCFNSGVFVYQPSVETY 146
Query: 181 SHLLETLKVTPPSSFAEQDFLNNFFR-----NIYKPISHTYNFVLAMLWRH-PXXXXXXX 234
+ LL +Q LN FF +I K + YN ++ + P
Sbjct: 147 NQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGA 206
Query: 235 XXXXXYCASGSKPWRYT 251
+ +KPW YT
Sbjct: 207 NAKVVHFLGQTKPWNYT 223
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|B Chain B, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|C Chain C, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|D Chain D, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|E Chain E, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|F Chain F, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|G Chain G, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|H Chain H, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|I Chain I, Crystal Structure Of Rabbit Muscle Glycogenin
pdb|1LL0|J Chain J, Crystal Structure Of Rabbit Muscle Glycogenin
Length = 339
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 96/257 (37%), Gaps = 43/257 (16%)
Query: 3 SKRAYVTFLAGNGDYXXXXXXXXXXXRKAKSAYPLAVAVLPDVPADHRKIL--VSQGCIV 60
+ +A+VT L N Y ++ +++ LAV P V RK L V I
Sbjct: 8 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVIT 66
Query: 61 REIQPVYPPENQTQFAMAYYVINYSKLRIWEFVEYAKMIYLDGDIQVFENIDHLFELPNG 120
+I + T + +KL W +Y+K +++D D V NID LFE
Sbjct: 67 VDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE- 125
Query: 121 YLYAAMDCFCEKTWSNSPQYKIGYCQQCPEKVKWPASMGSPPPKYFNAGMFVYEPNLLTY 180
L AA D P + P FN+G+FVY+P++ TY
Sbjct: 126 -LSAAPD----------PGW----------------------PDCFNSGVFVYQPSVETY 152
Query: 181 SHLLETLKVTPPSSFAEQDFLNNFFR-----NIYKPISHTYNFVLAMLWRH-PXXXXXXX 234
+ LL +Q LN FF +I K + YN ++ + P
Sbjct: 153 NQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGA 212
Query: 235 XXXXXYCASGSKPWRYT 251
+ +KPW YT
Sbjct: 213 NAKVVHFLGQTKPWNYT 229
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
pdb|3V8Z|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270
Complexed With Udp
Length = 291
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 96/257 (37%), Gaps = 43/257 (16%)
Query: 3 SKRAYVTFLAGNGDYXXXXXXXXXXXRKAKSAYPLAVAVLPDVPADHRKIL--VSQGCIV 60
+ +A+VT L N Y ++ +++ LAV P V RK L V I
Sbjct: 22 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVIT 80
Query: 61 REIQPVYPPENQTQFAMAYYVINYSKLRIWEFVEYAKMIYLDGDIQVFENIDHLFELPNG 120
+I + T + +KL W +Y+K +++D D V NID LFE
Sbjct: 81 VDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE- 139
Query: 121 YLYAAMDCFCEKTWSNSPQYKIGYCQQCPEKVKWPASMGSPPPKYFNAGMFVYEPNLLTY 180
L AA D P + P FN+G+FVY+P++ TY
Sbjct: 140 -LSAAPD----------PGW----------------------PDCFNSGVFVYQPSVETY 166
Query: 181 SHLLETLKVTPPSSFAEQDFLNNFFR-----NIYKPISHTYNFVLAMLWRH-PXXXXXXX 234
+ LL +Q LN FF +I K + YN ++ + P
Sbjct: 167 NQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGA 226
Query: 235 XXXXXYCASGSKPWRYT 251
+ +KPW YT
Sbjct: 227 NAKVVHFLGQTKPWNYT 243
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
pdb|1ZCT|B Chain B, Structure Of Glycogenin Truncated At Residue 270 In A
Complex With Udp
Length = 290
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 96/257 (37%), Gaps = 43/257 (16%)
Query: 3 SKRAYVTFLAGNGDYXXXXXXXXXXXRKAKSAYPLAVAVLPDVPADHRKIL--VSQGCIV 60
+ +A+VT L N Y ++ +++ LAV P V RK L V I
Sbjct: 22 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVIT 80
Query: 61 REIQPVYPPENQTQFAMAYYVINYSKLRIWEFVEYAKMIYLDGDIQVFENIDHLFELPNG 120
+I + T + +KL W +Y+K +++D D V NID LFE
Sbjct: 81 VDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE- 139
Query: 121 YLYAAMDCFCEKTWSNSPQYKIGYCQQCPEKVKWPASMGSPPPKYFNAGMFVYEPNLLTY 180
L AA D P + P FN+G+FVY+P++ TY
Sbjct: 140 -LSAAPD----------PGW----------------------PDCFNSGVFVYQPSVETY 166
Query: 181 SHLLETLKVTPPSSFAEQDFLNNFFR-----NIYKPISHTYNFVLAMLWRH-PXXXXXXX 234
+ LL +Q LN FF +I K + YN ++ + P
Sbjct: 167 NQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGA 226
Query: 235 XXXXXYCASGSKPWRYT 251
+ +KPW YT
Sbjct: 227 NAKVVHFLGQTKPWNYT 243
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin
pdb|1ZDF|A Chain A, Ser162 Mutant Of Glycogenin Complexed With Udp-Glucose And
Manganese
Length = 353
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 95/257 (36%), Gaps = 43/257 (16%)
Query: 3 SKRAYVTFLAGNGDYXXXXXXXXXXXRKAKSAYPLAVAVLPDVPADHRKIL--VSQGCIV 60
+ +A+VT L N Y ++ +++ LAV P V RK L V I
Sbjct: 22 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVIT 80
Query: 61 REIQPVYPPENQTQFAMAYYVINYSKLRIWEFVEYAKMIYLDGDIQVFENIDHLFELPNG 120
+I + T + +KL W +Y+K +++D D V NID LFE
Sbjct: 81 VDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE- 139
Query: 121 YLYAAMDCFCEKTWSNSPQYKIGYCQQCPEKVKWPASMGSPPPKYFNAGMFVYEPNLLTY 180
L AA D P + P FN+G+FVY+P++ TY
Sbjct: 140 -LSAAPD----------PGW----------------------PDCFNSGVFVYQPSVETY 166
Query: 181 SHLLETLKVTPPSSFAEQDFLNNFFR-----NIYKPISHTYNFVLAMLWRH-PXXXXXXX 234
+ LL Q LN FF +I K + YN ++ + P
Sbjct: 167 NQLLHVASEQGSFDGGSQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGA 226
Query: 235 XXXXXYCASGSKPWRYT 251
+ +KPW YT
Sbjct: 227 NAKVVHFLGQTKPWNYT 243
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue
270
Length = 291
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 96/257 (37%), Gaps = 43/257 (16%)
Query: 3 SKRAYVTFLAGNGDYXXXXXXXXXXXRKAKSAYPLAVAVLPDVPADHRKIL--VSQGCIV 60
+ +A+VT L N Y ++ +++ LAV P V RK L V I
Sbjct: 22 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVIT 80
Query: 61 REIQPVYPPENQTQFAMAYYVINYSKLRIWEFVEYAKMIYLDGDIQVFENIDHLFELPNG 120
+I + T + +KL W +Y+K +++D D V NID LFE
Sbjct: 81 VDILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE- 139
Query: 121 YLYAAMDCFCEKTWSNSPQYKIGYCQQCPEKVKWPASMGSPPPKYFNAGMFVYEPNLLTY 180
L AA D P + P FN+G+FVY+P++ TY
Sbjct: 140 -LSAAPD----------PGW----------------------PDCFNSGVFVYQPSVETY 166
Query: 181 SHLLETLKVTPPSSFAEQDFLNNFFR-----NIYKPISHTYNFVLAMLWRH-PXXXXXXX 234
+ LL +Q LN FF +I K + YN ++ + P
Sbjct: 167 NQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIFSYLPAFKAFGA 226
Query: 235 XXXXXYCASGSKPWRYT 251
+ +KPW YT
Sbjct: 227 NAKVVHFLGQTKPWNYT 243
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270
pdb|3V91|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue
270 Complexed With Udp-Glucose
Length = 291
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 96/257 (37%), Gaps = 43/257 (16%)
Query: 3 SKRAYVTFLAGNGDYXXXXXXXXXXXRKAKSAYPLAVAVLPDVPADHRKIL--VSQGCIV 60
+ +A+VT L N Y ++ +++ LAV P V RK L V I
Sbjct: 22 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVIT 80
Query: 61 REIQPVYPPENQTQFAMAYYVINYSKLRIWEFVEYAKMIYLDGDIQVFENIDHLFELPNG 120
+I + T + +KL W +Y+K +++D D V NID LFE
Sbjct: 81 VDILDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREE- 139
Query: 121 YLYAAMDCFCEKTWSNSPQYKIGYCQQCPEKVKWPASMGSPPPKYFNAGMFVYEPNLLTY 180
L AA D P + P FN+G+FVY+P++ TY
Sbjct: 140 -LSAAPD----------PGW----------------------PDCFNSGVFVYQPSVETY 166
Query: 181 SHLLETLKVTPPSSFAEQDFLNNFFR-----NIYKPISHTYNFVLAMLWRH-PXXXXXXX 234
+ LL +Q LN FF +I K + YN ++ + P
Sbjct: 167 NQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGA 226
Query: 235 XXXXXYCASGSKPWRYT 251
+ +KPW YT
Sbjct: 227 NAKVVHFLGQTKPWNYT 243
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese
Length = 284
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 95/257 (36%), Gaps = 43/257 (16%)
Query: 3 SKRAYVTFLAGNGDYXXXXXXXXXXXRKAKSAYPLAVAVLPDVPADHRKIL--VSQGCIV 60
+ +A+VT L N Y ++ ++ L V P V RK+L V I+
Sbjct: 24 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIM 82
Query: 61 REIQPVYPPENQTQFAMAYYVINYSKLRIWEFVEYAKMIYLDGDIQVFENIDHLFELPNG 120
++ + T + +KL W +Y+K +++D D V NID LF+
Sbjct: 83 VDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREE- 141
Query: 121 YLYAAMDCFCEKTWSNSPQYKIGYCQQCPEKVKWPASMGSPPPKYFNAGMFVYEPNLLTY 180
L AA D P + P FN+G+FVY+P++ TY
Sbjct: 142 -LSAAPD----------PGW----------------------PDCFNSGVFVYQPSVETY 168
Query: 181 SHLLETLKVTPPSSFAEQDFLNNFFR-----NIYKPISHTYNFVLAMLWRH-PXXXXXXX 234
+ LL +Q LN FF +I K + YN ++ + P
Sbjct: 169 NQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGA 228
Query: 235 XXXXXYCASGSKPWRYT 251
+ KPW YT
Sbjct: 229 SAKVVHFLGRVKPWNYT 245
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7M|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Triclinic Closed Form
pdb|3T7N|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7N|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp, In A Monoclinic Closed Form
pdb|3T7O|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3T7O|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp-Glucose And Glucose
pdb|3U2U|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2U|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltotetraose
pdb|3U2X|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2X|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And 1'-Deoxyglucose
pdb|3U2V|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
pdb|3U2V|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese, Udp And Maltohexaose
Length = 263
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 95/257 (36%), Gaps = 43/257 (16%)
Query: 3 SKRAYVTFLAGNGDYXXXXXXXXXXXRKAKSAYPLAVAVLPDVPADHRKIL--VSQGCIV 60
+ +A+VT L N Y ++ ++ L V P V RK+L V I+
Sbjct: 3 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIM 61
Query: 61 REIQPVYPPENQTQFAMAYYVINYSKLRIWEFVEYAKMIYLDGDIQVFENIDHLFELPNG 120
++ + T + +KL W +Y+K +++D D V NID LF+
Sbjct: 62 VDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREE- 120
Query: 121 YLYAAMDCFCEKTWSNSPQYKIGYCQQCPEKVKWPASMGSPPPKYFNAGMFVYEPNLLTY 180
L AA D P + P FN+G+FVY+P++ TY
Sbjct: 121 -LSAAPD----------PGW----------------------PDCFNSGVFVYQPSVETY 147
Query: 181 SHLLETLKVTPPSSFAEQDFLNNFFR-----NIYKPISHTYNFVLAMLWRH-PXXXXXXX 234
+ LL +Q LN FF +I K + YN ++ + P
Sbjct: 148 NQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGA 207
Query: 235 XXXXXYCASGSKPWRYT 251
+ KPW YT
Sbjct: 208 SAKVVHFLGRVKPWNYT 224
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form
pdb|3QVB|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Udp
pdb|3U2W|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
pdb|3U2W|B Chain B, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed
With Manganese And Glucose Or A Glucal Species
Length = 263
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 95/257 (36%), Gaps = 43/257 (16%)
Query: 3 SKRAYVTFLAGNGDYXXXXXXXXXXXRKAKSAYPLAVAVLPDVPADHRKIL--VSQGCIV 60
+ +A+VT L N Y ++ ++ L V P V RK+L V I+
Sbjct: 3 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIM 61
Query: 61 REIQPVYPPENQTQFAMAYYVINYSKLRIWEFVEYAKMIYLDGDIQVFENIDHLFELPNG 120
++ + T + +KL W +Y+K +++D D V NID LF+
Sbjct: 62 VDVLDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREE- 120
Query: 121 YLYAAMDCFCEKTWSNSPQYKIGYCQQCPEKVKWPASMGSPPPKYFNAGMFVYEPNLLTY 180
L AA D P + P FN+G+FVY+P++ TY
Sbjct: 121 -LSAAPD----------PGW----------------------PDCFNSGVFVYQPSVETY 147
Query: 181 SHLLETLKVTPPSSFAEQDFLNNFFR-----NIYKPISHTYNFVLAMLWRH-PXXXXXXX 234
+ LL +Q LN FF +I K + YN ++ + P
Sbjct: 148 NQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIFSYLPAFKVFGA 207
Query: 235 XXXXXYCASGSKPWRYT 251
+ KPW YT
Sbjct: 208 SAKVVHFLGRVKPWNYT 224
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp-Glucose
pdb|3RMV|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant
Complexed With Manganese And Udp
Length = 263
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 61/257 (23%), Positives = 95/257 (36%), Gaps = 43/257 (16%)
Query: 3 SKRAYVTFLAGNGDYXXXXXXXXXXXRKAKSAYPLAVAVLPDVPADHRKIL--VSQGCIV 60
+ +A+VT L N Y ++ ++ L V P V RK+L V I+
Sbjct: 3 TDQAFVT-LTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIM 61
Query: 61 REIQPVYPPENQTQFAMAYYVINYSKLRIWEFVEYAKMIYLDGDIQVFENIDHLFELPNG 120
++ + T + +KL W +Y+K +++D D V NID LF+
Sbjct: 62 VDVLDSGDSAHLTLMKRPELGVMLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREE- 120
Query: 121 YLYAAMDCFCEKTWSNSPQYKIGYCQQCPEKVKWPASMGSPPPKYFNAGMFVYEPNLLTY 180
L AA D P + P FN+G+FVY+P++ TY
Sbjct: 121 -LSAAPD----------PGW----------------------PDCFNSGVFVYQPSVETY 147
Query: 181 SHLLETLKVTPPSSFAEQDFLNNFFR-----NIYKPISHTYNFVLAMLWRH-PXXXXXXX 234
+ LL +Q LN FF +I K + YN ++ + P
Sbjct: 148 NQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISIYSYLPAFKVFGA 207
Query: 235 XXXXXYCASGSKPWRYT 251
+ KPW YT
Sbjct: 208 SAKVVHFLGRVKPWNYT 224
>pdb|3VMV|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165
pdb|3VMW|A Chain A, Crystal Structure Of Pectate Lyase Bsp165pela From
Bacillus Sp. N165 In Complex With Trigalacturonate
Length = 326
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 10/64 (15%)
Query: 141 KIGYCQQCPEK--VKWPAS--MGSPPPKYFN--AGMFVYEPNLLTYSHLLETLKVTPPSS 194
+G Q P +K P GSP Y+N +FV PN SHL T TPP S
Sbjct: 248 NVGSGQADPTTGFIKGPVGWFYGSPSTGYWNLRGNVFVNTPN----SHLNSTTNFTPPYS 303
Query: 195 FAEQ 198
+ Q
Sbjct: 304 YQVQ 307
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 25/113 (22%)
Query: 103 GDIQVFENIDHLFELPNGYLYA----AMDCFCEKTWSNSPQYKIGYCQQCPEKVKWPASM 158
G Q+F++I+ + +LP+ Y+ C K+ P +GY +Q W S
Sbjct: 195 GAKQMFKSIESIKDLPD-YIQIWPGHGAGSPCGKSLGAIPTSTLGYEKQT----NWAFS- 248
Query: 159 GSPPPKYFNAGMFVYEPNLLTYSHLLETLKVTPPSSFAEQDFLNNFFRNIYKP 211
E N T+ L + + PP FA+ +N F N+Y+P
Sbjct: 249 ---------------ENNEATFIDKLISDQPAPPHHFAQMKKINQFGMNLYQP 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,515,813
Number of Sequences: 62578
Number of extensions: 394037
Number of successful extensions: 711
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 679
Number of HSP's gapped (non-prelim): 34
length of query: 314
length of database: 14,973,337
effective HSP length: 99
effective length of query: 215
effective length of database: 8,778,115
effective search space: 1887294725
effective search space used: 1887294725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)