BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037699
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLS 70
++FLD+S N G IP+ +G++ L L+L N +SG+ VG+L + LDLS
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-----DISGSIPDEVGDLRGLNILDLS 688
Query: 71 FNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKI 105
N L+G+I + L L + LS++N++ I ++
Sbjct: 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 61/130 (46%), Gaps = 25/130 (19%)
Query: 11 LVFLDLSLNNFQGPIPRGLGNLT-SLRYLDLSAN--------------ISILQYL----- 50
L LDLS N F G +P L NL+ SL LDLS+N + LQ L
Sbjct: 345 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Query: 51 --SGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKIL-- 106
+G ++ N + + +L LSFN L G I +S G L KLR + L + + EI + L
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 107 -NIFSTCILD 115
T ILD
Sbjct: 465 VKTLETLILD 474
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 19 NNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKI 78
N F G IP L N + L L LS N YLSGT SS+G+L+ ++ L L N LEG+I
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFN-----YLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 79 ATSFGRLCKLRSVFLSHSNMNQEI 102
+ L ++ L +++ EI
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEI 482
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
+P LV L LS N G IP LG+L+ LR L L N+ L G +
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-----LEGEIPQELMY 464
Query: 61 LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISK 104
+ +++TL L FN+L G+I + L + LS++ + EI K
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
+P G +L L+L N+ G IP +G+L L LDLS+N L G ++
Sbjct: 648 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-----KLDGRIPQAMSA 702
Query: 61 LTSIQTLDLSFNNLEGKI 78
LT + +DLS NNL G I
Sbjct: 703 LTMLTEIDLSNNNLSGPI 720
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
+L FLD+S NNF IP LG+ ++L++LD+S N LSG FS ++ T ++ L++
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-----KLSGDFSRAISTCTELKLLNI 254
Query: 70 SFNNLEGKI 78
S N G I
Sbjct: 255 SSNQFVGPI 263
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 20/109 (18%)
Query: 1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
+P G ++L L LS N+F G IP LG+ SL +LDL+ N+ +GT +++
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL-----FNGTIPAAMFK 560
Query: 61 LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIF 109
+ GKIA +F + R V++ + M +E N+
Sbjct: 561 QS-------------GKIAANF--IAGKRYVYIKNDGMKKECHGAGNLL 594
Score = 33.9 bits (76), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 33/193 (17%)
Query: 5 FGLSDHLVFLDLSLNNFQGPIP--RGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNL 61
F S L LDLS N+ GP+ LG+ + L++L++S+N + +SG L
Sbjct: 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-----L 150
Query: 62 TSIQTLDLSFNNLEGK--IATSFGRLC-KLRSVFLSHSNMNQEISKILNIFSTCILDGLE 118
S++ LDLS N++ G + C +L+ + +S + ++ ++ S C+ LE
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-----VSRCV--NLE 203
Query: 119 VLEMTEWQXXXXXXXXXXXXXXFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQ 178
L+++ G F S L++ D+S N L+ + S +
Sbjct: 204 FLDVSSNNFST------------GIPF---LGDCSALQHLDISGNKLSGDFSRAISTCTE 248
Query: 179 LKELNLESCNLVG 191
LK LN+ S VG
Sbjct: 249 LKLLNISSNQFVG 261
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 9/110 (8%)
Query: 1 MPWVFGLSDHLVFLDLSLNNFQGPIPRG-LGNLTSLRYLDLSANISILQYLSGTFSSSVG 59
+P FG L L LS NNF G +P L + L+ LDLS N SG S+
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-----EFSGELPESLT 364
Query: 60 NLT-SIQTLDLSFNNLEGKIATSFGRLCK--LRSVFLSHSNMNQEISKIL 106
NL+ S+ TLDLS NN G I + + K L+ ++L ++ +I L
Sbjct: 365 NLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN----------ISILQYLS--- 51
G L LD+S N G R + T L+ L++S+N + LQYLS
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 278
Query: 52 GTFSSSV-----GNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKIL 106
F+ + G ++ LDLS N+ G + FG L S+ LS +N + E L
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE----L 334
Query: 107 NIFSTCILDGLEVLEMT 123
+ + + GL+VL+++
Sbjct: 335 PMDTLLKMRGLKVLDLS 351
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLS 70
++FLD+S N G IP+ +G++ L L+L N +SG+ VG+L + LDLS
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN-----DISGSIPDEVGDLRGLNILDLS 685
Query: 71 FNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKI 105
N L+G+I + L L + LS++N++ I ++
Sbjct: 686 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 61/130 (46%), Gaps = 25/130 (19%)
Query: 11 LVFLDLSLNNFQGPIPRGLGNLT-SLRYLDLSAN--------------ISILQYL----- 50
L LDLS N F G +P L NL+ SL LDLS+N + LQ L
Sbjct: 342 LKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
Query: 51 --SGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKIL-- 106
+G ++ N + + +L LSFN L G I +S G L KLR + L + + EI + L
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 107 -NIFSTCILD 115
T ILD
Sbjct: 462 VKTLETLILD 471
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 45/84 (53%), Gaps = 5/84 (5%)
Query: 19 NNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKI 78
N F G IP L N + L L LS N YLSGT SS+G+L+ ++ L L N LEG+I
Sbjct: 401 NGFTGKIPPTLSNCSELVSLHLSFN-----YLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 455
Query: 79 ATSFGRLCKLRSVFLSHSNMNQEI 102
+ L ++ L +++ EI
Sbjct: 456 PQELMYVKTLETLILDFNDLTGEI 479
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
+P LV L LS N G IP LG+L+ LR L L N+ L G +
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-----LEGEIPQELMY 461
Query: 61 LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISK 104
+ +++TL L FN+L G+I + L + LS++ + EI K
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
+P G +L L+L N+ G IP +G+L L LDLS+N L G ++
Sbjct: 645 IPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-----KLDGRIPQAMSA 699
Query: 61 LTSIQTLDLSFNNLEGKI 78
LT + +DLS NNL G I
Sbjct: 700 LTMLTEIDLSNNNLSGPI 717
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
+L FLD+S NNF IP LG+ ++L++LD+S N LSG FS ++ T ++ L++
Sbjct: 198 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN-----KLSGDFSRAISTCTELKLLNI 251
Query: 70 SFNNLEGKI 78
S N G I
Sbjct: 252 SSNQFVGPI 260
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 20/109 (18%)
Query: 1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN 60
+P G ++L L LS N+F G IP LG+ SL +LDL+ N+ +GT +++
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL-----FNGTIPAAMFK 557
Query: 61 LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIF 109
+ GKIA +F + R V++ + M +E N+
Sbjct: 558 QS-------------GKIAANF--IAGKRYVYIKNDGMKKECHGAGNLL 591
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 86/193 (44%), Gaps = 33/193 (17%)
Query: 5 FGLSDHLVFLDLSLNNFQGPIP--RGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNL 61
F S L LDLS N+ GP+ LG+ + L++L++S+N + +SG L
Sbjct: 93 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK-----L 147
Query: 62 TSIQTLDLSFNNLEGK--IATSFGRLC-KLRSVFLSHSNMNQEISKILNIFSTCILDGLE 118
S++ LDLS N++ G + C +L+ + +S + ++ ++ S C+ LE
Sbjct: 148 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-----VSRCV--NLE 200
Query: 119 VLEMTEWQXXXXXXXXXXXXXXFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQ 178
L+++ G F S L++ D+S N L+ + S +
Sbjct: 201 FLDVSSNNFST------------GIPF---LGDCSALQHLDISGNKLSGDFSRAISTCTE 245
Query: 179 LKELNLESCNLVG 191
LK LN+ S VG
Sbjct: 246 LKLLNISSNQFVG 258
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 1 MPWVFGLSDHLVFLDLSLNNFQGPIPRG-LGNLTSLRYLDLSANISILQYLSGTFSSSVG 59
+P FG L L LS NNF G +P L + L+ LDLS N SG S+
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-----EFSGELPESLT 361
Query: 60 NLT-SIQTLDLSFNNLEGKI 78
NL+ S+ TLDLS NN G I
Sbjct: 362 NLSASLLTLDLSSNNFSGPI 381
Score = 30.8 bits (68), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN----------ISILQYLS--- 51
G L LD+S N G R + T L+ L++S+N + LQYLS
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 275
Query: 52 GTFSSSV-----GNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKIL 106
F+ + G ++ LDLS N+ G + FG L S+ LS +N + E L
Sbjct: 276 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGE----L 331
Query: 107 NIFSTCILDGLEVLEMT 123
+ + + GL+VL+++
Sbjct: 332 PMDTLLKMRGLKVLDLS 348
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
Query: 18 LNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGK 77
+NN GPIP + LT L YL ++ +SG + + ++ TLD S+N L G
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITH-----TNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140
Query: 78 IATSFGRLCKLRSVFLSHSNMNQEISKILNIFS 110
+ S L L + + ++ I FS
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 56 SSVGNLTSIQTLDLS-FNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCI 113
SS+ NL + L + NNL G I + +L +L ++++H+N++ I L+ T +
Sbjct: 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 10 HLVFLDLSLNNFQGPIPRGLGNLTSL-RYLDLSANISILQYLSGTFSSSVGNLTSIQTLD 68
+LV + N G IP G+ + L + +S N L+G + NL ++ +D
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-----RLTGKIPPTFANL-NLAFVD 203
Query: 69 LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKI 105
LS N LEG + FG + + L+ +++ ++ K+
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV 240
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 18/118 (15%)
Query: 11 LVFLDLSLN--NFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLD 68
L FLDLS N +F+G + TSL+YLDLS N I T SS+ L ++ LD
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI------TMSSNFLGLEQLEHLD 402
Query: 69 LSFNNLEGKIATSFGRLCKLRSVF---LSHSNMNQEISKILNIFSTCILDGLEVLEMT 123
+NL K + F LR++ +SH++ + I N S+ LEVL+M
Sbjct: 403 FQHSNL--KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-----LEVLKMA 453
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLS 70
L++LD+S + + L+SL L ++ N +L F+ L ++ LDLS
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE----LRNLTFLDLS 478
Query: 71 FNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT 123
LE T+F L L+ + +SH+N L+ F L+ L+VL+ +
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-----LDTFPYKCLNSLQVLDYS 526
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 58/118 (49%), Gaps = 18/118 (15%)
Query: 11 LVFLDLSLN--NFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLD 68
L FLDLS N +F+G + TSL+YLDLS N I T SS+ L ++ LD
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI------TMSSNFLGLEQLEHLD 402
Query: 69 LSFNNLEGKIATSFGRLCKLRSVF---LSHSNMNQEISKILNIFSTCILDGLEVLEMT 123
+NL K + F LR++ +SH++ + I N S+ LEVL+M
Sbjct: 403 FQHSNL--KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-----LEVLKMA 453
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 19/110 (17%)
Query: 31 NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLE-----GKIATSFGRL 85
+L SL +LDLS N+ + +YL S+ G S+QTL LS N+L G+I + L
Sbjct: 358 HLKSLEFLDLSENLMVEEYLKN--SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 415
Query: 86 CKL---RSVFLSHSNMNQ--EISKILN-------IFSTCILDGLEVLEMT 123
L R+ F + Q E + LN + TCI LEVL+++
Sbjct: 416 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVS 465
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 19/110 (17%)
Query: 31 NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLE-----GKIATSFGRL 85
+L SL +LDLS N+ + +YL S+ G S+QTL LS N+L G+I + L
Sbjct: 332 HLKSLEFLDLSENLMVEEYLKN--SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389
Query: 86 CKL---RSVFLSHSNMNQ--EISKILN-------IFSTCILDGLEVLEMT 123
L R+ F + Q E + LN + TCI LEVL+++
Sbjct: 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVS 439
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 18/125 (14%)
Query: 4 VFGLSDHLVFLDLSLN--NFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL 61
VF L L LS N +F+G + TSL+YLDLS N I T SS+ L
Sbjct: 47 VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI------TMSSNFLGL 100
Query: 62 TSIQTLDLSFNNLEGKIATSFGRLCKLRSVF---LSHSNMNQEISKILNIFSTCILDGLE 118
++ LD +NL K + F LR++ +SH++ + I N S+ LE
Sbjct: 101 EQLEHLDFQHSNL--KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-----LE 153
Query: 119 VLEMT 123
VL+M
Sbjct: 154 VLKMA 158
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 9/113 (7%)
Query: 11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLS 70
L++LD+S + + L+SL L ++ N +L F+ L ++ LDLS
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE----LRNLTFLDLS 183
Query: 71 FNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT 123
LE T+F L L+ + +SH+N L+ F L+ L+VL+ +
Sbjct: 184 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-----LDTFPYKCLNSLQVLDYS 231
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 14 LDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNN 73
L LS+N+F N SL +L + N+ L G +GNL QTLDLS N+
Sbjct: 303 LVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEK-LGNL---QTLDLSHND 358
Query: 74 LEGKIATS--FGRLCKLRSVFLSHS 96
+E S L L+++ LSH+
Sbjct: 359 IEASDCCSLQLKNLSHLQTLNLSHN 383
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.4 bits (67), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLD 68
+ L++LD+S N + LTSL L ++ N + T S+ N T++ LD
Sbjct: 419 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN----SFKDNTLSNVFANTTNLTFLD 474
Query: 69 LSFNNLEGKIATSFGRLCKLRSVFLSHSNM 98
LS LE F L +L+ + +SH+N+
Sbjct: 475 LSKCQLEQISWGVFDTLHRLQLLNMSHNNL 504
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLD 68
+ L++LD+S N + LTSL L ++ N + T S+ N T++ LD
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGN----SFKDNTLSNVFANTTNLTFLD 479
Query: 69 LSFNNLEGKIATSFGRLCKLRSVFLSHSNM 98
LS LE F L +L+ + +SH+N+
Sbjct: 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.0 bits (66), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)
Query: 25 IPRGL-GNLTSLRYLDLSANISILQYL-SGTFSSSVGNLTSIQTLDLSFNNLEGKIATSF 82
+P G+ LT+L YL+L+ N LQ L G F LT++ LDLS+N L+ F
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQ--LQSLPKGVFDK----LTNLTELDLSYNQLQSLPEGVF 177
Query: 83 GRLCKLRSVFLSHSNM 98
+L +L+ + L + +
Sbjct: 178 DKLTQLKDLRLYQNQL 193
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 11 LVFLDLSLNNFQG-PIPRGLGNLTSLRYLDLSA 42
L LDLS N+F P+ + GNLT L +L LSA
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 19/109 (17%)
Query: 31 NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEG--KIATSFGRLCKL 88
+L SL YLDLS N+ + +YL S+ S+QTL L N+L K + L L
Sbjct: 332 HLKSLEYLDLSENLMVEEYLKN--SACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNL 389
Query: 89 RSVFLSHSNMNQ--------EISKILNIFST-------CILDGLEVLEM 122
++ +S ++ + E K LN+ ST CI LE+L++
Sbjct: 390 TNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCIPKTLEILDV 438
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDL 69
+L++LD+S + + L+SL L ++ N +L F+ L ++ LDL
Sbjct: 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE----LRNLTFLDL 501
Query: 70 SFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT 123
S LE T+F L L+ + +SH+N L+ F L+ L+VL+ +
Sbjct: 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-----LDTFPYKCLNSLQVLDYS 550
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 21/92 (22%)
Query: 29 LGNLTSLRYLDLSAN-ISILQYLSG-------TFSSS-------VGNLTSIQTLDLSFNN 73
L NLT+L L+LS+N IS + LSG +FSS+ + NLT+++ LD+S N
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNK 184
Query: 74 LEGKIATSFGRLCKLRSVFLSHSNMNQEISKI 105
+ + +L L S+ + N +IS I
Sbjct: 185 VSD--ISVLAKLTNLESLIAT----NNQISDI 210
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 21/92 (22%)
Query: 29 LGNLTSLRYLDLSAN-ISILQYLSG-------TFSSS-------VGNLTSIQTLDLSFNN 73
L NLT+L L+LS+N IS + LSG +FSS+ + NLT+++ LD+S N
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNK 184
Query: 74 LEGKIATSFGRLCKLRSVFLSHSNMNQEISKI 105
+ + +L L S+ + N +IS I
Sbjct: 185 VSD--ISVLAKLTNLESLIAT----NNQISDI 210
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 75/190 (39%), Gaps = 30/190 (15%)
Query: 6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQ 65
G+ + +L+L NN Q +L L L L N SI Q G F+ L S+
Sbjct: 72 GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNG----LASLN 126
Query: 66 TLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEW 125
TL+L N L + +F L KLR ++L ++ + S N + + L L+ E+
Sbjct: 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186
Query: 126 QXXXXXXXXXXXXXXFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLE 185
+ E F L LKY ++ + P+ P L+EL +
Sbjct: 187 ------------------ISEGAFEGLFNLKYLNLGM--CNIKDMPNLTPLVGLEELEMS 226
Query: 186 SCNLVGNRFP 195
GN FP
Sbjct: 227 -----GNHFP 231
>pdb|4B4T|P Chain P, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 445
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 21 FQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSS--VGNLTSIQTLDL-SFNNLEGK 77
Q I + + L S + LDL+ IS+++ + + V + T DL EGK
Sbjct: 93 IQYMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGK 152
Query: 78 IATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDG 116
I + LC+L+ M+++I IL IL G
Sbjct: 153 IDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKG 191
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN-----LTSIQ 65
L +L L NN Q PR L++LRYL L + Q +S ++ + L ++
Sbjct: 274 LRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTK-QSVSLASHPNIDDFSFQWLKYLE 332
Query: 66 TLDLSFNNLEGKIATSFGRLCKLRSVFLSHS 96
L++ NN+ + +F L L+ + LS +
Sbjct: 333 YLNMDDNNIPSTKSNTFTGLVSLKYLSLSKT 363
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 33 TSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVF 92
TS++ L L AN +L TFS T++ LDLS+NNL SF L LR +
Sbjct: 222 TSIQNLSL-ANNQLLATSESTFSGL--KWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLS 278
Query: 93 LSHSNMNQ 100
L ++N+ +
Sbjct: 279 LEYNNIQR 286
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 21/92 (22%)
Query: 29 LGNLTSLRYLDLSAN-ISILQYLSG-------TFSSS-------VGNLTSIQTLDLSFNN 73
L NLT+L L+LS+N IS + LSG FSS+ + NLT+++ LD+S N
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNK 184
Query: 74 LEGKIATSFGRLCKLRSVFLSHSNMNQEISKI 105
+ + +L L S+ + N +IS I
Sbjct: 185 VSD--ISVLAKLTNLESLIAT----NNQISDI 210
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 25 IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR 84
+P+ L N L +DLS N +S + S N+T + TL LS+N L +F
Sbjct: 46 VPKELSNYKHLTLIDLSNN-----RISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDG 100
Query: 85 LCKLRSVFLSHSN 97
L LR + L H N
Sbjct: 101 LKSLRLLSL-HGN 112
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 27.3 bits (59), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 14 LDLSLNNFQGPIPRGLGNLTSLRYLDL-SANISILQYLSGTFSSSVGNLTSIQTLDLSFN 72
L+LS N P LTSLR L L A ++ ++ ++ +L S++ L+LS N
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE------RNAFDDLKSLEELNLSHN 236
Query: 73 NLEGKIATSFGRLCKLRSVFLSHS 96
NL F L +L V L+H+
Sbjct: 237 NLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 20/91 (21%)
Query: 29 LGNLTSLRYLDLSAN-ISILQYLSG-------TFSSSV------GNLTSIQTLDLSFNNL 74
L NLT+L L+LS+N IS + LSG +F + V NLT+++ LD+S N +
Sbjct: 130 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 189
Query: 75 EGKIATSFGRLCKLRSVFLSHSNMNQEISKI 105
+ +L L S+ + N +IS I
Sbjct: 190 SD--ISVLAKLTNLESLIAT----NNQISDI 214
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 20/91 (21%)
Query: 29 LGNLTSLRYLDLSAN-ISILQYLSG-------TFSSSV------GNLTSIQTLDLSFNNL 74
L NLT+L L+LS+N IS + LSG +F + V NLT+++ LD+S N +
Sbjct: 129 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 188
Query: 75 EGKIATSFGRLCKLRSVFLSHSNMNQEISKI 105
+ +L L S+ + N +IS I
Sbjct: 189 SD--ISVLAKLTNLESLIAT----NNQISDI 213
>pdb|1LF6|A Chain A, Crystal Structure Of Bacterial Glucoamylase
pdb|1LF6|B Chain B, Crystal Structure Of Bacterial Glucoamylase
pdb|1LF9|A Chain A, Crystal Structure Of Bacterial Glucoamylase Complexed With
Acarbose
pdb|1LF9|B Chain B, Crystal Structure Of Bacterial Glucoamylase Complexed With
Acarbose
Length = 684
Score = 26.9 bits (58), Expect = 8.0, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 30 GNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89
GN+ +DL+ N LS S S T+++TL +NNL+ + + C
Sbjct: 228 GNIIEGAEIDLTKNSEFEIVLSFGQSDSEAAKTALETLGEDYNNLKNNYIDEWTKYCNTL 287
Query: 90 SVFLSHSN 97
+ F +N
Sbjct: 288 NNFNGKAN 295
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 26.6 bits (57), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 9/97 (9%)
Query: 4 VFGLSDHLVFLDLSLNNFQGPIPRGLGN-LTSLRYLDLSANISILQYL-SGTFSSSVGNL 61
VF L L L N Q +P G+ N LTSL YL+LS N LQ L +G F L
Sbjct: 47 VFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTN--QLQSLPNGVFD----KL 99
Query: 62 TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNM 98
T ++ L L+ N L+ F +L +L+ + L + +
Sbjct: 100 TQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 20/91 (21%)
Query: 29 LGNLTSLRYLDLSAN-ISILQYLSGTFS-------------SSVGNLTSIQTLDLSFNNL 74
L NLT+L L+LS+N IS + LSG S + NLT+++ LD+S N +
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKV 184
Query: 75 EGKIATSFGRLCKLRSVFLSHSNMNQEISKI 105
+ +L L S+ + N +IS I
Sbjct: 185 SD--ISVLAKLTNLESLIAT----NNQISDI 209
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 26.6 bits (57), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 20/91 (21%)
Query: 29 LGNLTSLRYLDLSAN-ISILQYLSGTFS-------------SSVGNLTSIQTLDLSFNNL 74
L NLT+L L+LS+N IS + LSG S + NLT+++ LD+S N +
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKV 184
Query: 75 EGKIATSFGRLCKLRSVFLSHSNMNQEISKI 105
+ +L L S+ + N +IS I
Sbjct: 185 SD--ISVLAKLTNLESLIAT----NNQISDI 209
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 14 LDLSLNNFQGPIPRGLGNLTSLRYLDL-SANISILQYLSGTFSSSVGNLTSIQTLDLSFN 72
L+LS N P LTSLR L L A ++ ++ ++ +L S++ L+LS N
Sbjct: 183 LELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE------RNAFDDLKSLEELNLSHN 236
Query: 73 NLEGKIATSFGRLCKLRSVFLSHS 96
NL F L +L V L+H+
Sbjct: 237 NLMSLPHDLFTPLHRLERVHLNHN 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,166,951
Number of Sequences: 62578
Number of extensions: 167732
Number of successful extensions: 612
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 168
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)