Query 037699
Match_columns 203
No_of_seqs 135 out of 2083
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 03:33:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037699.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037699hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 4.1E-21 8.9E-26 163.2 12.7 184 6-201 161-355 (968)
2 PLN00113 leucine-rich repeat r 99.8 1.1E-20 2.4E-25 160.6 12.9 189 1-201 180-379 (968)
3 KOG0617 Ras suppressor protein 99.8 5.1E-22 1.1E-26 131.2 -5.6 169 1-201 26-195 (264)
4 KOG4194 Membrane glycoprotein 99.7 6.5E-18 1.4E-22 130.3 5.3 188 1-196 117-334 (873)
5 KOG4194 Membrane glycoprotein 99.7 2.5E-18 5.3E-23 132.6 2.5 184 6-200 242-438 (873)
6 KOG0444 Cytoskeletal regulator 99.7 8.1E-18 1.8E-22 131.2 0.1 93 1-100 95-187 (1255)
7 KOG0617 Ras suppressor protein 99.6 2.8E-17 6.1E-22 108.9 -3.5 146 2-176 49-195 (264)
8 KOG0444 Cytoskeletal regulator 99.5 2.4E-16 5.3E-21 123.1 -3.2 187 6-201 123-315 (1255)
9 KOG0472 Leucine-rich repeat pr 99.5 1.2E-16 2.7E-21 118.4 -6.0 180 10-201 115-297 (565)
10 PLN03210 Resistant to P. syrin 99.5 1E-12 2.2E-17 113.5 14.4 87 2-96 605-691 (1153)
11 KOG4237 Extracellular matrix p 99.5 2.4E-15 5.1E-20 111.3 -1.8 188 8-200 66-369 (498)
12 PLN03210 Resistant to P. syrin 99.4 2.4E-12 5.3E-17 111.2 13.7 184 3-196 628-843 (1153)
13 cd00116 LRR_RI Leucine-rich re 99.4 8.2E-14 1.8E-18 104.8 4.1 180 5-191 77-292 (319)
14 KOG0472 Leucine-rich repeat pr 99.4 2.7E-15 6E-20 111.3 -5.2 175 2-189 130-309 (565)
15 KOG4237 Extracellular matrix p 99.4 1.9E-14 4E-19 106.6 -1.0 85 15-107 52-137 (498)
16 KOG0618 Serine/threonine phosp 99.4 3.9E-15 8.4E-20 120.2 -4.9 182 9-201 241-429 (1081)
17 PRK15370 E3 ubiquitin-protein 99.4 3.2E-12 7E-17 104.9 11.2 117 63-189 263-379 (754)
18 cd00116 LRR_RI Leucine-rich re 99.4 2.1E-13 4.5E-18 102.6 2.3 174 9-189 51-262 (319)
19 KOG0618 Serine/threonine phosp 99.4 1.5E-13 3.3E-18 111.2 0.9 160 1-188 302-487 (1081)
20 PRK15370 E3 ubiquitin-protein 99.3 1.7E-11 3.7E-16 100.7 9.3 167 9-198 199-365 (754)
21 PRK15387 E3 ubiquitin-protein 99.3 2.1E-11 4.5E-16 100.1 8.8 63 129-198 403-465 (788)
22 KOG0532 Leucine-rich repeat (L 99.3 1.3E-13 2.7E-18 106.6 -3.7 158 8-199 97-254 (722)
23 PF14580 LRR_9: Leucine-rich r 99.2 4.8E-11 1E-15 81.2 7.5 124 10-160 20-147 (175)
24 PF14580 LRR_9: Leucine-rich r 99.2 3E-11 6.4E-16 82.3 5.3 127 30-184 16-147 (175)
25 PLN03150 hypothetical protein; 99.1 2.3E-10 4.9E-15 93.2 8.9 93 10-107 419-511 (623)
26 KOG3207 Beta-tubulin folding c 99.1 1.2E-11 2.6E-16 93.0 1.4 186 8-201 120-325 (505)
27 PRK15387 E3 ubiquitin-protein 99.1 1.2E-09 2.6E-14 90.0 11.4 74 10-99 202-275 (788)
28 PLN03150 hypothetical protein; 99.1 5.4E-10 1.2E-14 91.0 9.3 107 64-189 420-527 (623)
29 PF13855 LRR_8: Leucine rich r 99.1 2.9E-10 6.3E-15 64.1 4.8 61 128-189 1-61 (61)
30 COG4886 Leucine-rich repeat (L 99.1 6.9E-10 1.5E-14 86.1 7.8 169 9-189 116-289 (394)
31 KOG1259 Nischarin, modulator o 99.0 2.3E-11 5E-16 87.9 -0.5 129 31-189 282-411 (490)
32 KOG0532 Leucine-rich repeat (L 99.0 4E-12 8.8E-17 98.4 -5.9 156 13-202 79-234 (722)
33 KOG1909 Ran GTPase-activating 99.0 2.6E-10 5.5E-15 83.7 3.0 93 9-101 92-200 (382)
34 KOG1259 Nischarin, modulator o 99.0 1.2E-10 2.6E-15 84.3 0.8 105 60-189 282-386 (490)
35 PF13855 LRR_8: Leucine rich r 99.0 9.8E-10 2.1E-14 61.9 4.1 59 10-73 2-60 (61)
36 KOG3207 Beta-tubulin folding c 98.7 2.1E-09 4.6E-14 81.2 0.4 163 29-197 117-291 (505)
37 KOG1909 Ran GTPase-activating 98.7 3.8E-09 8.3E-14 77.6 0.9 14 9-22 30-43 (382)
38 COG4886 Leucine-rich repeat (L 98.6 1.3E-07 2.8E-12 73.5 6.2 166 13-189 97-267 (394)
39 KOG4658 Apoptotic ATPase [Sign 98.5 1.6E-07 3.4E-12 79.1 6.1 82 10-97 546-629 (889)
40 KOG2120 SCF ubiquitin ligase, 98.5 7E-09 1.5E-13 75.1 -1.8 170 10-188 186-374 (419)
41 KOG2982 Uncharacterized conser 98.5 2.5E-08 5.4E-13 72.3 0.4 178 7-189 69-261 (418)
42 KOG2120 SCF ubiquitin ligase, 98.5 1.9E-09 4E-14 78.0 -5.9 169 11-188 161-349 (419)
43 COG5238 RNA1 Ran GTPase-activa 98.4 2.3E-07 5E-12 66.6 3.0 169 7-189 90-284 (388)
44 KOG1859 Leucine-rich repeat pr 98.4 2.9E-09 6.2E-14 85.4 -7.6 40 57-98 182-221 (1096)
45 KOG4658 Apoptotic ATPase [Sign 98.4 3.6E-07 7.9E-12 77.0 4.2 87 4-96 566-652 (889)
46 KOG1859 Leucine-rich repeat pr 98.3 1.8E-08 3.9E-13 80.9 -4.8 39 62-101 164-202 (1096)
47 PF12799 LRR_4: Leucine Rich r 98.2 8.4E-07 1.8E-11 46.1 2.1 36 129-166 2-37 (44)
48 KOG4579 Leucine-rich repeat (L 98.2 1.6E-07 3.5E-12 60.6 -1.3 104 64-189 29-135 (177)
49 KOG0531 Protein phosphatase 1, 98.2 3.8E-07 8.2E-12 71.3 0.1 87 6-102 92-178 (414)
50 PF12799 LRR_4: Leucine Rich r 98.1 5.9E-06 1.3E-10 42.9 4.2 37 63-100 2-38 (44)
51 KOG0531 Protein phosphatase 1, 98.1 3.6E-07 7.8E-12 71.4 -0.8 107 58-189 91-198 (414)
52 COG5238 RNA1 Ran GTPase-activa 98.1 2.2E-06 4.8E-11 61.7 3.0 186 8-195 29-260 (388)
53 KOG4579 Leucine-rich repeat (L 98.0 2.6E-07 5.7E-12 59.6 -3.0 89 10-105 28-119 (177)
54 KOG3665 ZYG-1-like serine/thre 98.0 8.1E-06 1.7E-10 67.4 4.0 60 126-185 218-283 (699)
55 PRK15386 type III secretion pr 98.0 0.00012 2.5E-09 56.6 9.9 73 8-98 51-124 (426)
56 KOG1644 U2-associated snRNP A' 97.9 3.7E-05 8.1E-10 53.0 6.3 128 11-165 21-152 (233)
57 KOG3665 ZYG-1-like serine/thre 97.9 6.4E-06 1.4E-10 67.9 1.8 39 61-99 147-186 (699)
58 KOG2982 Uncharacterized conser 97.7 5.6E-05 1.2E-09 55.4 4.5 174 4-183 92-285 (418)
59 KOG1644 U2-associated snRNP A' 97.7 7.8E-05 1.7E-09 51.5 4.8 105 63-187 43-150 (233)
60 PF13306 LRR_5: Leucine rich r 97.3 0.002 4.2E-08 41.7 7.7 37 5-42 8-44 (129)
61 KOG2123 Uncharacterized conser 97.2 1.6E-05 3.5E-10 57.6 -3.7 83 63-167 20-102 (388)
62 KOG2739 Leucine-rich acidic nu 97.1 0.00029 6.3E-09 50.5 2.3 68 25-99 35-104 (260)
63 PRK15386 type III secretion pr 97.1 0.0037 8E-08 48.5 8.3 149 31-198 50-203 (426)
64 KOG2739 Leucine-rich acidic nu 97.1 0.00043 9.3E-09 49.7 2.7 86 10-100 44-130 (260)
65 PF13306 LRR_5: Leucine rich r 97.1 0.0046 1E-07 40.0 7.3 60 28-94 7-66 (129)
66 PF00560 LRR_1: Leucine Rich R 96.7 0.00053 1.1E-08 29.7 0.2 19 179-199 2-20 (22)
67 KOG1947 Leucine rich repeat pr 96.1 0.0019 4E-08 51.5 0.7 15 150-164 359-373 (482)
68 PF00560 LRR_1: Leucine Rich R 96.1 0.004 8.7E-08 26.9 1.4 18 155-173 2-19 (22)
69 PF13504 LRR_7: Leucine rich r 95.7 0.0065 1.4E-07 24.4 1.1 12 178-189 2-13 (17)
70 KOG2123 Uncharacterized conser 95.5 0.00047 1E-08 50.2 -4.4 83 10-101 20-103 (388)
71 KOG1947 Leucine rich repeat pr 95.1 0.018 3.9E-07 45.9 2.8 38 60-97 241-280 (482)
72 KOG4308 LRR-containing protein 94.7 0.00026 5.7E-09 56.2 -8.5 178 11-189 89-302 (478)
73 smart00369 LRR_TYP Leucine-ric 94.6 0.04 8.7E-07 24.6 2.2 21 177-199 2-22 (26)
74 smart00370 LRR Leucine-rich re 94.6 0.04 8.7E-07 24.6 2.2 21 177-199 2-22 (26)
75 KOG3864 Uncharacterized conser 94.6 0.005 1.1E-07 42.8 -1.3 61 126-186 123-185 (221)
76 KOG3864 Uncharacterized conser 92.9 0.02 4.3E-07 39.9 -0.8 34 10-43 102-135 (221)
77 PF13516 LRR_6: Leucine Rich r 92.6 0.057 1.2E-06 23.6 0.8 13 63-75 3-15 (24)
78 KOG4341 F-box protein containi 90.0 0.13 2.9E-06 40.0 0.8 160 10-188 269-437 (483)
79 smart00364 LRR_BAC Leucine-ric 88.7 0.37 8E-06 21.7 1.5 18 177-196 2-19 (26)
80 KOG4341 F-box protein containi 88.5 0.26 5.5E-06 38.5 1.4 76 126-201 344-425 (483)
81 KOG4308 LRR-containing protein 87.6 0.011 2.3E-07 47.3 -6.6 40 128-167 262-304 (478)
82 smart00368 LRR_RI Leucine rich 86.3 0.58 1.2E-05 21.3 1.4 13 177-189 2-14 (28)
83 smart00365 LRR_SD22 Leucine-ri 84.6 0.92 2E-05 20.4 1.6 14 153-166 2-15 (26)
84 KOG0473 Leucine-rich repeat pr 77.7 0.033 7.1E-07 39.9 -6.6 83 9-99 42-124 (326)
85 KOG3763 mRNA export factor TAP 75.0 1.9 4.2E-05 35.0 1.7 64 126-190 216-283 (585)
86 smart00367 LRR_CC Leucine-rich 66.2 4.4 9.5E-05 17.8 1.2 10 178-187 3-12 (26)
87 KOG3763 mRNA export factor TAP 57.0 6.2 0.00014 32.3 1.3 80 8-92 217-307 (585)
88 KOG0473 Leucine-rich repeat pr 49.1 0.82 1.8E-05 33.1 -4.1 59 10-75 66-124 (326)
89 PF07723 LRR_2: Leucine Rich R 39.6 9.6 0.00021 17.0 -0.0 11 179-189 2-12 (26)
90 TIGR00864 PCC polycystin catio 29.6 42 0.00092 33.5 2.3 30 135-165 2-31 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=4.1e-21 Score=163.17 Aligned_cols=184 Identities=31% Similarity=0.422 Sum_probs=97.0
Q ss_pred ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhcc
Q 037699 6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRL 85 (203)
Q Consensus 6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 85 (203)
+.+++|+.|++++|.+.+..|..+.++++|++|++++|. +.+..|..+.++++|++|++++|.+++..|..++.+
T Consensus 161 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 161 GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ-----LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC-----CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 333444444444444444444444444444444444443 344444444555555555555555544455555555
Q ss_pred CCccEEEccCCcCCcchhhhhhhccccccCCcccccc---------cc--ccCCCCCEEEccCCccccccchhhhccCCC
Q 037699 86 CKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM---------TE--WQLSSLDSVNLSNNTLFGSLFEIHFAKLSK 154 (203)
Q Consensus 86 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~--~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~ 154 (203)
++|++|++++|.+.+..+..+.. +..++.+.+ +. ..+++|+.|++++|.+.+..+. .+..+++
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~ 309 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGN-----LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE-LVIQLQN 309 (968)
T ss_pred CCCCEEECcCceeccccChhHhC-----CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh-hHcCCCC
Confidence 55555555555544433333221 112222211 11 1455666677766666555444 4566677
Q ss_pred ccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699 155 LKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201 (203)
Q Consensus 155 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~ 201 (203)
|+.|++++|.+++..+..+..+++|+.|++++|.+ ...+|.++..+
T Consensus 310 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l-~~~~p~~l~~~ 355 (968)
T PLN00113 310 LEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF-SGEIPKNLGKH 355 (968)
T ss_pred CcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC-cCcCChHHhCC
Confidence 77777777777666666666677777777777776 44566666554
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.85 E-value=1.1e-20 Score=160.59 Aligned_cols=189 Identities=31% Similarity=0.468 Sum_probs=158.4
Q ss_pred CCcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh
Q 037699 1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT 80 (203)
Q Consensus 1 ~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 80 (203)
+|..++.+++|++|++++|.+.+..|..+..+.+|++|++++|. +.+..|..+..+++|++|++++|.+++..|.
T Consensus 180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-----l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNN-----LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCc-----cCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence 35666777899999999999998899999999999999999997 7778899999999999999999999888999
Q ss_pred hhhccCCccEEEccCCcCCcchhhhhhhccccccCCcccccc---------cc--ccCCCCCEEEccCCccccccchhhh
Q 037699 81 SFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM---------TE--WQLSSLDSVNLSNNTLFGSLFEIHF 149 (203)
Q Consensus 81 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~--~~~~~L~~L~l~~n~l~~~~~~~~l 149 (203)
.++.+++|+.|++++|.+.+..+..+..+ .+++.+++ +. ..+++|+.|++++|.+.+..+. .+
T Consensus 255 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-----~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~-~~ 328 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNKLSGPIPPSIFSL-----QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV-AL 328 (968)
T ss_pred hHhCCCCCCEEECcCCeeeccCchhHhhc-----cCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCCh-hH
Confidence 99999999999999998877666544332 22333222 22 2678999999999999877666 68
Q ss_pred ccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699 150 AKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201 (203)
Q Consensus 150 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~ 201 (203)
..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+ ...+|.++..+
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l-~~~~p~~~~~~ 379 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL-TGEIPEGLCSS 379 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee-EeeCChhHhCc
Confidence 8999999999999999988888899999999999999999 55678777654
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.79 E-value=5.1e-22 Score=131.16 Aligned_cols=169 Identities=24% Similarity=0.391 Sum_probs=140.9
Q ss_pred CCcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh
Q 037699 1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT 80 (203)
Q Consensus 1 ~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 80 (203)
+|..|... +++.|-+++|.++ ..|+.++.+.+|+.|++.+|+ ...+|..++++++|++|+++.|.+. .+|.
T Consensus 26 ~~gLf~~s-~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnq------ie~lp~~issl~klr~lnvgmnrl~-~lpr 96 (264)
T KOG0617|consen 26 LPGLFNMS-NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQ------IEELPTSISSLPKLRILNVGMNRLN-ILPR 96 (264)
T ss_pred cccccchh-hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccch------hhhcChhhhhchhhhheecchhhhh-cCcc
Confidence 35556665 8999999999999 677789999999999999994 5667889999999999999999987 8999
Q ss_pred hhhccCCccEEEccCCcCCcch-hhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEE
Q 037699 81 SFGRLCKLRSVFLSHSNMNQEI-SKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFD 159 (203)
Q Consensus 81 ~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~ 159 (203)
.|+.++.|+.||+++|.+.... |.-+- .+..|+.|.+++|++. ..|. .++.+++|++|.
T Consensus 97 gfgs~p~levldltynnl~e~~lpgnff------------------~m~tlralyl~dndfe-~lp~-dvg~lt~lqil~ 156 (264)
T KOG0617|consen 97 GFGSFPALEVLDLTYNNLNENSLPGNFF------------------YMTTLRALYLGDNDFE-ILPP-DVGKLTNLQILS 156 (264)
T ss_pred ccCCCchhhhhhccccccccccCCcchh------------------HHHHHHHHHhcCCCcc-cCCh-hhhhhcceeEEe
Confidence 9999999999999999887532 22111 3567888999999983 6666 688999999999
Q ss_pred ccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699 160 VSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201 (203)
Q Consensus 160 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~ 201 (203)
+++|.+- ..|+.++.+.+|++|++++|++ .-+|.++..+
T Consensus 157 lrdndll-~lpkeig~lt~lrelhiqgnrl--~vlppel~~l 195 (264)
T KOG0617|consen 157 LRDNDLL-SLPKEIGDLTRLRELHIQGNRL--TVLPPELANL 195 (264)
T ss_pred eccCchh-hCcHHHHHHHHHHHHhccccee--eecChhhhhh
Confidence 9999877 5678888999999999999998 6678877654
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=6.5e-18 Score=130.34 Aligned_cols=188 Identities=27% Similarity=0.320 Sum_probs=122.1
Q ss_pred CCcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh
Q 037699 1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT 80 (203)
Q Consensus 1 ~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 80 (203)
||.+.....+++.|++.+|.|..+..+.+..++.|+.+|++.|. +....-..+..-.++++|++++|.|+..-..
T Consensus 117 IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~-----is~i~~~sfp~~~ni~~L~La~N~It~l~~~ 191 (873)
T KOG4194|consen 117 IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL-----ISEIPKPSFPAKVNIKKLNLASNRITTLETG 191 (873)
T ss_pred cccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch-----hhcccCCCCCCCCCceEEeeccccccccccc
Confidence 45555556567777777777766666666666667777777663 3333334455555677777777777655455
Q ss_pred hhhccCCccEEEccCCcCCcchhhhhhhccccc-------------------cCCccccccc----------c-ccCCCC
Q 037699 81 SFGRLCKLRSVFLSHSNMNQEISKILNIFSTCI-------------------LDGLEVLEMT----------E-WQLSSL 130 (203)
Q Consensus 81 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~-------------------~~~l~~l~~~----------~-~~~~~L 130 (203)
.|..+.+|..+.+++|.++...+..++.+..+. +++++.+.+. + +.+.++
T Consensus 192 ~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~km 271 (873)
T KOG4194|consen 192 HFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKM 271 (873)
T ss_pred cccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeeccc
Confidence 566666676777777766665555444211111 2222222211 1 156678
Q ss_pred CEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCch
Q 037699 131 DSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPS 196 (203)
Q Consensus 131 ~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~ 196 (203)
+.|++..|++. ..-..++-+++.|+.|++++|.|...-++.|..+.+|++|+|++|+| .+++.
T Consensus 272 e~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i--~~l~~ 334 (873)
T KOG4194|consen 272 EHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI--TRLDE 334 (873)
T ss_pred ceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc--ccCCh
Confidence 88888888885 44444677889999999999999887788899899999999999998 44544
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=2.5e-18 Score=132.62 Aligned_cols=184 Identities=23% Similarity=0.246 Sum_probs=100.6
Q ss_pred ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhcc
Q 037699 6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRL 85 (203)
Q Consensus 6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 85 (203)
..++.|+.+.+..|.+..--.+.|..+.++++|+++.|+ +...-..++-+++.|++|++++|.|....+..+...
T Consensus 242 qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~-----l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 242 QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNR-----LQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred cCchhhhhhhhhhcCcccccCcceeeecccceeecccch-----hhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 344456666666666554444555666666666666665 444444555566666666666666665555555556
Q ss_pred CCccEEEccCCcCCcchhhhhhhccccccCCccccccc----------cc-cCCCCCEEEccCCcccccc--chhhhccC
Q 037699 86 CKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT----------EW-QLSSLDSVNLSNNTLFGSL--FEIHFAKL 152 (203)
Q Consensus 86 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~----------~~-~~~~L~~L~l~~n~l~~~~--~~~~l~~~ 152 (203)
++|++|++++|.+....+..+..+.. ++.+.+. +. .+.+|+.|+++.|.+...+ ....+.++
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~-----Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQ-----LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHH-----hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 66666666666665555544432111 1111111 10 4556666666666654221 11245566
Q ss_pred CCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhc
Q 037699 153 SKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLS 200 (203)
Q Consensus 153 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~ 200 (203)
++|+.|++.+|++.....+.+..++.|+.|+|.+|.| -+.-|..+..
T Consensus 392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai-aSIq~nAFe~ 438 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI-ASIQPNAFEP 438 (873)
T ss_pred hhhhheeecCceeeecchhhhccCcccceecCCCCcc-eeeccccccc
Confidence 6666666666666644445666666666666666666 3333444433
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.66 E-value=8.1e-18 Score=131.22 Aligned_cols=93 Identities=32% Similarity=0.350 Sum_probs=72.7
Q ss_pred CCcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh
Q 037699 1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT 80 (203)
Q Consensus 1 ~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 80 (203)
||.-+-.++.|+.+|+++|.+. +.|..+...+++-.|++++|+ +..+....+-++..|-.|+++.|.+. .+|.
T Consensus 95 iP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~-----IetIPn~lfinLtDLLfLDLS~NrLe-~LPP 167 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNN-----IETIPNSLFINLTDLLFLDLSNNRLE-MLPP 167 (1255)
T ss_pred CCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCc-----cccCCchHHHhhHhHhhhccccchhh-hcCH
Confidence 3443334458899999999988 788888888888899999985 55554445667788888899999887 7788
Q ss_pred hhhccCCccEEEccCCcCCc
Q 037699 81 SFGRLCKLRSVFLSHSNMNQ 100 (203)
Q Consensus 81 ~~~~l~~L~~L~l~~n~~~~ 100 (203)
.+..+..|++|.+++|++.-
T Consensus 168 Q~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 168 QIRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred HHHHHhhhhhhhcCCChhhH
Confidence 88888899999999887653
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.59 E-value=2.8e-17 Score=108.85 Aligned_cols=146 Identities=25% Similarity=0.444 Sum_probs=123.4
Q ss_pred CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccC-ccchh
Q 037699 2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLE-GKIAT 80 (203)
Q Consensus 2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~ 80 (203)
|.-+...++|+.|++++|.++ ++|..++.+++|++|++..| .....|..|++++.|+.||+.+|.+. ..+|.
T Consensus 49 ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmn------rl~~lprgfgs~p~levldltynnl~e~~lpg 121 (264)
T KOG0617|consen 49 PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMN------RLNILPRGFGSFPALEVLDLTYNNLNENSLPG 121 (264)
T ss_pred CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchh------hhhcCccccCCCchhhhhhccccccccccCCc
Confidence 343444569999999999998 89999999999999999998 56778999999999999999999987 57888
Q ss_pred hhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEc
Q 037699 81 SFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDV 160 (203)
Q Consensus 81 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l 160 (203)
.|..|..|+.|.+++|.+.-..+... ++++|+.|.+.+|++. +.|. .++.+..|++|++
T Consensus 122 nff~m~tlralyl~dndfe~lp~dvg-------------------~lt~lqil~lrdndll-~lpk-eig~lt~lrelhi 180 (264)
T KOG0617|consen 122 NFFYMTTLRALYLGDNDFEILPPDVG-------------------KLTNLQILSLRDNDLL-SLPK-EIGDLTRLRELHI 180 (264)
T ss_pred chhHHHHHHHHHhcCCCcccCChhhh-------------------hhcceeEEeeccCchh-hCcH-HHHHHHHHHHHhc
Confidence 99999999999999998764444332 6889999999999995 6777 7899999999999
Q ss_pred cCCccccccCCCCCCC
Q 037699 161 SQNSLTLNVSPDWIPP 176 (203)
Q Consensus 161 ~~n~~~~~~~~~l~~~ 176 (203)
++|+++ ..|+.+..+
T Consensus 181 qgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 181 QGNRLT-VLPPELANL 195 (264)
T ss_pred ccceee-ecChhhhhh
Confidence 999998 456665543
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.53 E-value=2.4e-16 Score=123.13 Aligned_cols=187 Identities=24% Similarity=0.242 Sum_probs=95.8
Q ss_pred ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhcc
Q 037699 6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRL 85 (203)
Q Consensus 6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 85 (203)
..-+++-+|++++|.|..+...-+-++..|-.|++++| -.+.+|+....+..|++|.+++|++..---..+..|
T Consensus 123 E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N------rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm 196 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN------RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM 196 (1255)
T ss_pred hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc------hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc
Confidence 33456677888888887444455567777777888887 344556666667777777777776542111112233
Q ss_pred CCccEEEccCCcCCc-chhhhhh---hccccccCCccccccccc--cCCCCCEEEccCCccccccchhhhccCCCccEEE
Q 037699 86 CKLRSVFLSHSNMNQ-EISKILN---IFSTCILDGLEVLEMTEW--QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFD 159 (203)
Q Consensus 86 ~~L~~L~l~~n~~~~-~~~~~~~---~~~~~~~~~l~~l~~~~~--~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~ 159 (203)
.+|+.|.+++.+-+. ..|..+. .+....+.....-.+|.+ ++++|+.|++++|.++. .-. ..+.+.++++|+
T Consensus 197 tsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~-~~~~W~~lEtLN 274 (1255)
T KOG0444|consen 197 TSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LNM-TEGEWENLETLN 274 (1255)
T ss_pred hhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceee-eec-cHHHHhhhhhhc
Confidence 444445554432211 1111111 111100110000011111 45566666666666642 222 344555666666
Q ss_pred ccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699 160 VSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201 (203)
Q Consensus 160 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~ 201 (203)
++.|+++ ..|..+..+++|+.|.+.+|.+.=+-+|+.|.++
T Consensus 275 lSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 275 LSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred cccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 6666665 3455555566666666666655445555555543
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.51 E-value=1.2e-16 Score=118.36 Aligned_cols=180 Identities=22% Similarity=0.280 Sum_probs=96.6
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (203)
.++.+++++|.+. ++++.++.+..++.++..+|+ ....|+.+..+.++..+++.+|.+. .+|...-.|..|+
T Consensus 115 ~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~------i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~ 186 (565)
T KOG0472|consen 115 SLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQ------ISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLK 186 (565)
T ss_pred hhhhhhcccccee-ecCchHHHHhhhhhhhccccc------cccCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHH
Confidence 4444444444444 344444444445555444442 2223444444444555555555554 2333333355555
Q ss_pred EEEccCCcCCcchhhhhh--hccccccCCccccccccc-cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccc
Q 037699 90 SVFLSHSNMNQEISKILN--IFSTCILDGLEVLEMTEW-QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166 (203)
Q Consensus 90 ~L~l~~n~~~~~~~~~~~--~~~~~~~~~l~~l~~~~~-~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~ 166 (203)
+++...|.+...+++... .+....+.......+|.+ .+..|+++.++.|.+. ..++....++.++.+||+++|+++
T Consensus 187 ~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk 265 (565)
T KOG0472|consen 187 HLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK 265 (565)
T ss_pred hcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc
Confidence 555555554443333221 111111222222223322 4556667777777663 556656667788888888888887
Q ss_pred cccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699 167 LNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201 (203)
Q Consensus 167 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~ 201 (203)
+.|+.+.-+.+|.+||+++|.| +.+|..++.|
T Consensus 266 -e~Pde~clLrsL~rLDlSNN~i--s~Lp~sLgnl 297 (565)
T KOG0472|consen 266 -EVPDEICLLRSLERLDLSNNDI--SSLPYSLGNL 297 (565)
T ss_pred -cCchHHHHhhhhhhhcccCCcc--ccCCcccccc
Confidence 5677777777888888888888 5677777665
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.48 E-value=1e-12 Score=113.52 Aligned_cols=87 Identities=25% Similarity=0.284 Sum_probs=51.4
Q ss_pred CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhh
Q 037699 2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATS 81 (203)
Q Consensus 2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 81 (203)
|..+.. .+|+.|++.++.+. .++..+..+++|+.++++++. ....+|. ++.+++|++|++++|.....+|..
T Consensus 605 P~~f~~-~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~-----~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~s 676 (1153)
T PLN03210 605 PSNFRP-ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSK-----NLKEIPD-LSMATNLETLKLSDCSSLVELPSS 676 (1153)
T ss_pred CCcCCc-cCCcEEECcCcccc-ccccccccCCCCCEEECCCCC-----CcCcCCc-cccCCcccEEEecCCCCccccchh
Confidence 444433 37777777777665 456666666777777776654 3334443 455666666666665544455656
Q ss_pred hhccCCccEEEccCC
Q 037699 82 FGRLCKLRSVFLSHS 96 (203)
Q Consensus 82 ~~~l~~L~~L~l~~n 96 (203)
+..+++|+.|++.+|
T Consensus 677 i~~L~~L~~L~L~~c 691 (1153)
T PLN03210 677 IQYLNKLEDLDMSRC 691 (1153)
T ss_pred hhccCCCCEEeCCCC
Confidence 666666666666554
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.47 E-value=2.4e-15 Score=111.27 Aligned_cols=188 Identities=26% Similarity=0.216 Sum_probs=109.7
Q ss_pred CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccc-cccCcc---------
Q 037699 8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSF-NNLEGK--------- 77 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~--------- 77 (203)
....+.+++..|.|+...+.+|+.+++|+.|++++|. +..+.|..|.+++.+..|.+.+ |+|+..
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~-----Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN-----ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccc-----hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 3455667777787776666777778888888888776 7777777777777776666655 666622
Q ss_pred ---------------chhhhhccCCccEEEccCCcCCcchhhhhh---------------------------------hc
Q 037699 78 ---------------IATSFGRLCKLRSVFLSHSNMNQEISKILN---------------------------------IF 109 (203)
Q Consensus 78 ---------------~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---------------------------------~~ 109 (203)
....+..++++..|.+.+|.+.......+. .+
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 123445555555555555544211110000 00
Q ss_pred cccc--------------------cCCcccc------------cccc---ccCCCCCEEEccCCccccccch--------
Q 037699 110 STCI--------------------LDGLEVL------------EMTE---WQLSSLDSVNLSNNTLFGSLFE-------- 146 (203)
Q Consensus 110 ~~~~--------------------~~~l~~l------------~~~~---~~~~~L~~L~l~~n~l~~~~~~-------- 146 (203)
.+.. ...++.+ ..|. ..+++|+.+++++|.+++....
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 0000 0000000 0111 1678899999999988632222
Q ss_pred ---------------hhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhc
Q 037699 147 ---------------IHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLS 200 (203)
Q Consensus 147 ---------------~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~ 200 (203)
..|.++..|++|+|.+|+|+...+..|..+.+|.+|+|-.|.+-.+.--.|+.+
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~ 369 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE 369 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH
Confidence 124455667777777777776666666666777777777777666666666554
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.44 E-value=2.4e-12 Score=111.23 Aligned_cols=184 Identities=23% Similarity=0.169 Sum_probs=117.7
Q ss_pred cccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhh
Q 037699 3 WVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSF 82 (203)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 82 (203)
..+..+++|+.++++++.....+| .+..+++|+.|++++|. ....+|..+..+++|+.|++++|.....+|..+
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~-----~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i 701 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCS-----SLVELPSSIQYLNKLEDLDMSRCENLEILPTGI 701 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCC-----CccccchhhhccCCCCEEeCCCCCCcCccCCcC
Confidence 334556788889998876444555 46778889999998886 666778888888889999998876555666654
Q ss_pred hccCCccEEEccCCcCCcchhhhhhhccccc--------------cCCcccccccc------------------ccCCCC
Q 037699 83 GRLCKLRSVFLSHSNMNQEISKILNIFSTCI--------------LDGLEVLEMTE------------------WQLSSL 130 (203)
Q Consensus 83 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~--------------~~~l~~l~~~~------------------~~~~~L 130 (203)
.+.+|+.|++++|......|.....+..+. +.++..+.+.. ...++|
T Consensus 702 -~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 702 -NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred -CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccc
Confidence 678888888888754433332221111111 11122111111 013467
Q ss_pred CEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCch
Q 037699 131 DSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPS 196 (203)
Q Consensus 131 ~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~ 196 (203)
+.|++++|.....+|. .++.+++|+.|++++|...+.+|... .+++|+.|++++|.. -..+|.
T Consensus 781 ~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~-L~~~p~ 843 (1153)
T PLN03210 781 TRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSR-LRTFPD 843 (1153)
T ss_pred hheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCc-cccccc
Confidence 7788877765555665 57788888888888875444555443 577888888888753 233443
No 13
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.44 E-value=8.2e-14 Score=104.79 Aligned_cols=180 Identities=23% Similarity=0.206 Sum_probs=112.4
Q ss_pred cccCCcccEEecCCCccCCCCCccccCCCC---ccEEeCCCCcccccccc----cccccccCCC-CCCCEEEccccccCc
Q 037699 5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTS---LRYLDLSANISILQYLS----GTFSSSVGNL-TSIQTLDLSFNNLEG 76 (203)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~~~~~----~~~~~~l~~~-~~L~~L~l~~~~~~~ 76 (203)
+...++|+.|++++|.+....+..+..+.. |++|++++|. +. ..+...+..+ ++|+.+++++|.+++
T Consensus 77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-----~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 151 (319)
T cd00116 77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-----LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG 151 (319)
T ss_pred HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-----cchHHHHHHHHHHHhCCCCceEEEcCCCcCCc
Confidence 344568889999998887555555555554 8899998885 33 2233345556 788888888888873
Q ss_pred ----cchhhhhccCCccEEEccCCcCCcchhhh-hhhccccccCCcccccccc---------------ccCCCCCEEEcc
Q 037699 77 ----KIATSFGRLCKLRSVFLSHSNMNQEISKI-LNIFSTCILDGLEVLEMTE---------------WQLSSLDSVNLS 136 (203)
Q Consensus 77 ----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~~~~~~~l~~l~~~~---------------~~~~~L~~L~l~ 136 (203)
.++..+..+.+|++|++++|.+.+..... ...+.. ...++.+.+.. ..+++|+.|+++
T Consensus 152 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 152 ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKA--NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLG 229 (319)
T ss_pred hHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHh--CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecC
Confidence 23345566678888888888877432221 111110 12233222211 146779999999
Q ss_pred CCccccccchhhhcc----CCCccEEEccCCcccc----ccCCCCCCCCCccEEEcCCCCCCC
Q 037699 137 NNTLFGSLFEIHFAK----LSKLKYFDVSQNSLTL----NVSPDWIPPFQLKELNLESCNLVG 191 (203)
Q Consensus 137 ~n~l~~~~~~~~l~~----~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~l~~ 191 (203)
+|.+.+......... .+.|+.|++++|.++. .+...+...++|+++++++|.+++
T Consensus 230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 988864322212222 3688999999998862 223344556788999999998843
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.41 E-value=2.7e-15 Score=111.34 Aligned_cols=175 Identities=23% Similarity=0.290 Sum_probs=122.2
Q ss_pred CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhh
Q 037699 2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATS 81 (203)
Q Consensus 2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 81 (203)
|+.++.+..++.++-.+|++. ..|+.+..+.++..+++.+|. .....|..+ .|+.|++++...|.++ .+|+.
T Consensus 130 ~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~-----l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~ 201 (565)
T KOG0472|consen 130 PDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNK-----LKALPENHI-AMKRLKHLDCNSNLLE-TLPPE 201 (565)
T ss_pred CchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccc-----hhhCCHHHH-HHHHHHhcccchhhhh-cCChh
Confidence 333444447777888888877 677777778888888888875 444444433 3777888888777776 77777
Q ss_pred hhccCCccEEEccCCcCCcchhhhh--hhccccccCCccccccccc---cCCCCCEEEccCCccccccchhhhccCCCcc
Q 037699 82 FGRLCKLRSVFLSHSNMNQEISKIL--NIFSTCILDGLEVLEMTEW---QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLK 156 (203)
Q Consensus 82 ~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~~~~~~~l~~l~~~~~---~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~ 156 (203)
++.|.+|..|++.+|++... |++- +.+..+.......-.+|+. .+.++..||+.+|.+. ..|. .+..+++|+
T Consensus 202 lg~l~~L~~LyL~~Nki~~l-Pef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pd-e~clLrsL~ 278 (565)
T KOG0472|consen 202 LGGLESLELLYLRRNKIRFL-PEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPD-EICLLRSLE 278 (565)
T ss_pred hcchhhhHHHHhhhcccccC-CCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCch-HHHHhhhhh
Confidence 88888888788888777532 2221 2222222221111122222 6789999999999995 6666 567889999
Q ss_pred EEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 157 YFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 157 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
.||+++|.+++ .|..++.+ +|+.|.+.||++
T Consensus 279 rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 279 RLDLSNNDISS-LPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred hhcccCCcccc-CCcccccc-eeeehhhcCCch
Confidence 99999999994 66778888 899999999997
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.41 E-value=1.9e-14 Score=106.60 Aligned_cols=85 Identities=21% Similarity=0.235 Sum_probs=64.9
Q ss_pred ecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEcc
Q 037699 15 DLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLS 94 (203)
Q Consensus 15 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 94 (203)
+.++-.++ ++|..+. +.-.++.+..|. +....+..|+.+++|+.|+++.|.|+...|.+|..+.++..+-+.
T Consensus 52 dCr~~GL~-eVP~~LP--~~tveirLdqN~-----I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvly 123 (498)
T KOG4237|consen 52 DCRGKGLT-EVPANLP--PETVEIRLDQNQ-----ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLY 123 (498)
T ss_pred EccCCCcc-cCcccCC--CcceEEEeccCC-----cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhh
Confidence 44444444 3443321 345688999997 888889999999999999999999998899999999998777666
Q ss_pred C-CcCCcchhhhhh
Q 037699 95 H-SNMNQEISKILN 107 (203)
Q Consensus 95 ~-n~~~~~~~~~~~ 107 (203)
+ |++.......+.
T Consensus 124 g~NkI~~l~k~~F~ 137 (498)
T KOG4237|consen 124 GNNKITDLPKGAFG 137 (498)
T ss_pred cCCchhhhhhhHhh
Confidence 5 888776555554
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.41 E-value=3.9e-15 Score=120.21 Aligned_cols=182 Identities=26% Similarity=0.352 Sum_probs=119.3
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
.+++.++++++.+. .+|+-++.+.+|+.+.+.+|. + ..+|..+....+|+.+...+|.+. .+|........|
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~-----l-~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL 312 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNR-----L-VALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSL 312 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchh-----H-HhhHHHHhhhhhHHHHHhhhhhhh-hCCCccccccee
Confidence 47777888888777 455777778888888888874 3 556666677777777777777776 666777778889
Q ss_pred cEEEccCCcCCcchhhhhhhccccc------cCCccccc-cccccCCCCCEEEccCCccccccchhhhccCCCccEEEcc
Q 037699 89 RSVFLSHSNMNQEISKILNIFSTCI------LDGLEVLE-MTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVS 161 (203)
Q Consensus 89 ~~L~l~~n~~~~~~~~~~~~~~~~~------~~~l~~l~-~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~ 161 (203)
++|++..|.+...++..+....... ...+..+. .+....+.|+.|.+.+|.+++...+ .+.+.++|++|+|+
T Consensus 313 ~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p-~l~~~~hLKVLhLs 391 (1081)
T KOG0618|consen 313 RTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP-VLVNFKHLKVLHLS 391 (1081)
T ss_pred eeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh-hhccccceeeeeec
Confidence 9999999988776665443211100 00111111 1112445677777777777665444 56677777777777
Q ss_pred CCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699 162 QNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201 (203)
Q Consensus 162 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~ 201 (203)
+|++.......+.++..|++|+|+||.+ ..+|+.+..+
T Consensus 392 yNrL~~fpas~~~kle~LeeL~LSGNkL--~~Lp~tva~~ 429 (1081)
T KOG0618|consen 392 YNRLNSFPASKLRKLEELEELNLSGNKL--TTLPDTVANL 429 (1081)
T ss_pred ccccccCCHHHHhchHHhHHHhcccchh--hhhhHHHHhh
Confidence 7777654445566677777777777777 6666666554
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=3.2e-12 Score=104.94 Aligned_cols=117 Identities=19% Similarity=0.255 Sum_probs=53.8
Q ss_pred CCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCcccc
Q 037699 63 SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFG 142 (203)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~ 142 (203)
+|+.|++++|.++ .+|..+. .+|+.|++++|.+..........+..+.+.+.....++....++|+.|++++|.++
T Consensus 263 ~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt- 338 (754)
T PRK15370 263 ALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT- 338 (754)
T ss_pred CCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-
Confidence 5666666666665 4454332 36777777777665432211111111111111111122222245566666666553
Q ss_pred ccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 143 SLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 143 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
.++. .+ .++|+.|++++|.++ .+|..+ .++|+.|+|++|.+
T Consensus 339 ~LP~-~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~L 379 (754)
T PRK15370 339 SLPA-SL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNAL 379 (754)
T ss_pred cCCh-hh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcC
Confidence 2332 11 245566666666555 233222 13455555555555
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.37 E-value=2.1e-13 Score=102.61 Aligned_cols=174 Identities=25% Similarity=0.291 Sum_probs=84.8
Q ss_pred CcccEEecCCCccCC------CCCccccCCCCccEEeCCCCcccccccccccccccCCC---CCCCEEEccccccCc---
Q 037699 9 DHLVFLDLSLNNFQG------PIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL---TSIQTLDLSFNNLEG--- 76 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~--- 76 (203)
+.++.++++++.+.. ..+..+..+++|++|++++|. +....+..+..+ ++|++|++++|.+++
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-----~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~ 125 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA-----LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL 125 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC-----CChhHHHHHHHHhccCcccEEEeeCCccchHHH
Confidence 346666666665541 122344556677777777664 332333333333 337777777776652
Q ss_pred -cchhhhhcc-CCccEEEccCCcCCcchhhhh-hhccccccCCccccccccc---------------cCCCCCEEEccCC
Q 037699 77 -KIATSFGRL-CKLRSVFLSHSNMNQEISKIL-NIFSTCILDGLEVLEMTEW---------------QLSSLDSVNLSNN 138 (203)
Q Consensus 77 -~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~---------------~~~~L~~L~l~~n 138 (203)
.+...+..+ ++|+.+++++|.+........ ..+.. +..++.+.+... ..++|+.|++++|
T Consensus 126 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 126 RLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRA--NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHh--CCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 222334455 667777777777663222111 11110 112222221111 2246666777666
Q ss_pred ccccccch---hhhccCCCccEEEccCCccccccCCCCC-----CCCCccEEEcCCCCC
Q 037699 139 TLFGSLFE---IHFAKLSKLKYFDVSQNSLTLNVSPDWI-----PPFQLKELNLESCNL 189 (203)
Q Consensus 139 ~l~~~~~~---~~l~~~~~L~~L~l~~n~~~~~~~~~l~-----~~~~L~~L~l~~n~l 189 (203)
.+.+.... ..+..+++|+.|++++|.++......+. ..+.|+.|++++|.+
T Consensus 204 ~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 204 GLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred ccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 65422111 1334556677777777666532111111 234667777777766
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.35 E-value=1.5e-13 Score=111.19 Aligned_cols=160 Identities=28% Similarity=0.372 Sum_probs=96.6
Q ss_pred CCcccccCCcccEEecCCCccCCCCCccc-c-------------------------CCCCccEEeCCCCccccccccccc
Q 037699 1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGL-G-------------------------NLTSLRYLDLSANISILQYLSGTF 54 (203)
Q Consensus 1 ~p~~~~~~~~L~~L~l~~~~~~~~~~~~~-~-------------------------~l~~L~~L~l~~~~~~~~~~~~~~ 54 (203)
+|......+.|++|++..|.+. .+|..+ . .++.|+.|++.+|. +.+..
T Consensus 302 ip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~-----Ltd~c 375 (1081)
T KOG0618|consen 302 IPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNH-----LTDSC 375 (1081)
T ss_pred CCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCc-----ccccc
Confidence 4556666668888888887776 333211 1 12335556666665 55555
Q ss_pred ccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEE
Q 037699 55 SSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVN 134 (203)
Q Consensus 55 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~ 134 (203)
-+.+..+.+|+.|++++|.+..--...+.++..|++|++++|++.... ...+ .++.|+.|.
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva------------------~~~~L~tL~ 436 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVA------------------NLGRLHTLR 436 (1081)
T ss_pred hhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHH------------------hhhhhHHHh
Confidence 556666667777777777666222334556666777777777665443 2222 455666666
Q ss_pred ccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCC
Q 037699 135 LSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCN 188 (203)
Q Consensus 135 l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 188 (203)
...|.+. ..| .+..++.|+.+|++.|.++....+.-...++|++|++++|.
T Consensus 437 ahsN~l~-~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 437 AHSNQLL-SFP--ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hcCCcee-ech--hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 6666663 445 35677777777777777775444444444677777777775
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=1.7e-11 Score=100.74 Aligned_cols=167 Identities=20% Similarity=0.305 Sum_probs=93.9
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
++++.|++++|.++ .+|..+. .+|+.|++++|. +. .+|..+. .+|+.|++++|.+. .+|..+. .+|
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~-----Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L 264 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQ-----LT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SAL 264 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCc-----cc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCC
Confidence 36677777777776 4554432 467777777774 33 3344332 35777777777776 5555443 467
Q ss_pred cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccc
Q 037699 89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN 168 (203)
Q Consensus 89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 168 (203)
+.|++++|.+..........+..+.+.+...-.++..-.++|+.|++++|.+. .++.. -.++|+.|++++|.++.
T Consensus 265 ~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt-~LP~~---l~~sL~~L~Ls~N~Lt~- 339 (754)
T PRK15370 265 QSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT-ALPET---LPPGLKTLEAGENALTS- 339 (754)
T ss_pred CEEECcCCccCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccc-cCCcc---ccccceeccccCCcccc-
Confidence 77777777766432211111111111111111111111234666666666664 33321 23578888888888874
Q ss_pred cCCCCCCCCCccEEEcCCCCCCCCCCchhh
Q 037699 169 VSPDWIPPFQLKELNLESCNLVGNRFPSWL 198 (203)
Q Consensus 169 ~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~ 198 (203)
+|..+ .++|+.|++++|.+ ..+|..+
T Consensus 340 LP~~l--~~sL~~L~Ls~N~L--~~LP~~l 365 (754)
T PRK15370 340 LPASL--PPELQVLDVSKNQI--TVLPETL 365 (754)
T ss_pred CChhh--cCcccEEECCCCCC--CcCChhh
Confidence 45444 26899999999998 4566544
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.27 E-value=2.1e-11 Score=100.06 Aligned_cols=63 Identities=30% Similarity=0.213 Sum_probs=37.8
Q ss_pred CCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhh
Q 037699 129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWL 198 (203)
Q Consensus 129 ~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~ 198 (203)
+|+.|++++|.+. .+|. ...+|+.|++++|+++ .+|..+..+++|+.|+|++|+++ ...|..+
T Consensus 403 ~L~~LdLS~N~Ls-sIP~----l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls-~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCC-CCCc----chhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC-chHHHHH
Confidence 4555555555553 3332 1234566677777766 45666777778888888888883 3444444
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.27 E-value=1.3e-13 Score=106.56 Aligned_cols=158 Identities=28% Similarity=0.329 Sum_probs=104.8
Q ss_pred CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699 8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK 87 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 87 (203)
+..|+.+.+..|.+. .+|..++.+..|.+++++.|+ ...+|..++.++ |+.+.++.|+++ .+|..++....
T Consensus 97 f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq------lS~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~t 167 (722)
T KOG0532|consen 97 FVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ------LSHLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPT 167 (722)
T ss_pred HHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch------hhcCChhhhcCc-ceeEEEecCccc-cCCcccccchh
Confidence 334445555555554 566666777777777777773 444555555554 777777777776 66777776677
Q ss_pred ccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699 88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL 167 (203)
Q Consensus 88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~ 167 (203)
|..++.+.|.+........ .+.+|+.|.+..|.+. .+|. .+..++ |..||++.|+++
T Consensus 168 l~~ld~s~nei~slpsql~-------------------~l~slr~l~vrRn~l~-~lp~-El~~Lp-Li~lDfScNkis- 224 (722)
T KOG0532|consen 168 LAHLDVSKNEIQSLPSQLG-------------------YLTSLRDLNVRRNHLE-DLPE-ELCSLP-LIRLDFSCNKIS- 224 (722)
T ss_pred HHHhhhhhhhhhhchHHhh-------------------hHHHHHHHHHhhhhhh-hCCH-HHhCCc-eeeeecccCcee-
Confidence 7777777777655443332 4566777778777774 5555 344343 777888888887
Q ss_pred ccCCCCCCCCCccEEEcCCCCCCCCCCchhhh
Q 037699 168 NVSPDWIPPFQLKELNLESCNLVGNRFPSWLL 199 (203)
Q Consensus 168 ~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~ 199 (203)
.+|-.+..+.+|++|-|.+|.+ .+-|..|+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPL--qSPPAqIC 254 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPL--QSPPAQIC 254 (722)
T ss_pred ecchhhhhhhhheeeeeccCCC--CCChHHHH
Confidence 5677778888888888888888 55666655
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.23 E-value=4.8e-11 Score=81.24 Aligned_cols=124 Identities=31% Similarity=0.395 Sum_probs=41.9
Q ss_pred cccEEecCCCccCCCCCcccc-CCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhh-hccCC
Q 037699 10 HLVFLDLSLNNFQGPIPRGLG-NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSF-GRLCK 87 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~ 87 (203)
.++.|++++|.++. + +.++ .+.+|+.|++++|. +... +.+..++.|++|++++|.++. +...+ ..+++
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~-----I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQ-----ITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS-------S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCC-----Cccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 67778888888773 2 2344 46778888888885 4432 246667788888888888873 33333 45778
Q ss_pred ccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccc--hhhhccCCCccEEEc
Q 037699 88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLF--EIHFAKLSKLKYFDV 160 (203)
Q Consensus 88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~~~~L~~L~l 160 (203)
|++|++++|++..... +..+. .+++|+.|++.+|.+.+... ...+..+|+|+.||-
T Consensus 90 L~~L~L~~N~I~~l~~-------------l~~L~----~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNE-------------LEPLS----SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCC-------------CGGGG----G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHH-------------hHHHH----cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 8888888887754211 11111 56778888888877753211 124556777777764
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.20 E-value=3e-11 Score=82.26 Aligned_cols=127 Identities=25% Similarity=0.295 Sum_probs=49.6
Q ss_pred cCCCCccEEeCCCCcccccccccccccccC-CCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhh
Q 037699 30 GNLTSLRYLDLSANISILQYLSGTFSSSVG-NLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNI 108 (203)
Q Consensus 30 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 108 (203)
.+...+++|++.+|. +.. + +.+. .+.+|+.|++++|.++ .+ +.+..++.|++|++++|.+.........
T Consensus 16 ~n~~~~~~L~L~~n~-----I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~- 85 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQ-----IST-I-ENLGATLDKLEVLDLSNNQIT-KL-EGLPGLPRLKTLDLSNNRISSISEGLDK- 85 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHH-
T ss_pred ccccccccccccccc-----ccc-c-cchhhhhcCCCEEECCCCCCc-cc-cCccChhhhhhcccCCCCCCccccchHH-
Confidence 345568999999996 433 2 2344 5678999999999998 33 3577889999999999998865333222
Q ss_pred ccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCC----CCCCCCCccEEEc
Q 037699 109 FSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSP----DWIPPFQLKELNL 184 (203)
Q Consensus 109 ~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~----~l~~~~~L~~L~l 184 (203)
.+++|+.|++++|.+.+......+..+++|+.|++.+|.++.. +. .+..+|+|+.||-
T Consensus 86 -----------------~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 -----------------NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -----------------H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred -----------------hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 4788999999999886433334677899999999999998742 22 1345778888764
No 25
>PLN03150 hypothetical protein; Provisional
Probab=99.14 E-value=2.3e-10 Score=93.22 Aligned_cols=93 Identities=31% Similarity=0.555 Sum_probs=84.1
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (203)
.++.|++++|.+.+.+|..+..+.+|+.|++++|. +.+.+|..+..+++|+.|++++|.+++.+|..++.+++|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~-----l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS-----IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCc-----ccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 37789999999999999999999999999999997 7888898899999999999999999999999999999999
Q ss_pred EEEccCCcCCcchhhhhh
Q 037699 90 SVFLSHSNMNQEISKILN 107 (203)
Q Consensus 90 ~L~l~~n~~~~~~~~~~~ 107 (203)
+|++++|.+.+..|..+.
T Consensus 494 ~L~Ls~N~l~g~iP~~l~ 511 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALG 511 (623)
T ss_pred EEECcCCcccccCChHHh
Confidence 999999999877776553
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=1.2e-11 Score=92.96 Aligned_cols=186 Identities=22% Similarity=0.161 Sum_probs=112.2
Q ss_pred CCcccEEecCCCccCCCCC--ccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccc-hhhhhc
Q 037699 8 SDHLVFLDLSLNNFQGPIP--RGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKI-ATSFGR 84 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~ 84 (203)
.++|+.+.+.++... ..+ +....|++++.|+++.|- . .....+......+++|+.|+++.|.+..-. ...-..
T Consensus 120 ~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL-~--~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 120 LKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNL-F--HNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred HHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhh-H--HhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 346677777777655 222 466677778888887772 0 011223334456777777777777765211 111234
Q ss_pred cCCccEEEccCCcCCcchhhhhhhccccccCCccccccccc-----------cCCCCCEEEccCCccccccchhhhccCC
Q 037699 85 LCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEW-----------QLSSLDSVNLSNNTLFGSLFEIHFAKLS 153 (203)
Q Consensus 85 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-----------~~~~L~~L~l~~n~l~~~~~~~~l~~~~ 153 (203)
++.++.|.++.|.++........ ..+++++.+.+.+. .++.|+.|++++|.+.+.......+.++
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~----~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~ 271 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWIL----LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLP 271 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHH----HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccccc
Confidence 56677777777777643322211 01333333332221 4568999999999886443233567899
Q ss_pred CccEEEccCCccccc-cCCC-----CCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699 154 KLKYFDVSQNSLTLN-VSPD-----WIPPFQLKELNLESCNLVGNRFPSWLLSQ 201 (203)
Q Consensus 154 ~L~~L~l~~n~~~~~-~~~~-----l~~~~~L~~L~l~~n~l~~~~~p~~~~~~ 201 (203)
.|..|+++.|.+... .++. ....++|++|++..|++.+.+....+..+
T Consensus 272 ~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l 325 (505)
T KOG3207|consen 272 GLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL 325 (505)
T ss_pred chhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc
Confidence 999999999988753 2222 35577999999999998655554444443
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.10 E-value=1.2e-09 Score=89.97 Aligned_cols=74 Identities=16% Similarity=0.209 Sum_probs=43.5
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (203)
.-..|+++.+.++ .+|..+. .+++.|++.+|. +.. +|.. .++|++|++++|.++ .+|.. .++|+
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~-----Lt~-LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~ 265 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNN-----LTS-LPAL---PPELRTLEVSGNQLT-SLPVL---PPGLL 265 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCc-----CCC-CCCC---CCCCcEEEecCCccC-cccCc---ccccc
Confidence 3446777777776 4565553 367777777764 332 3332 356777777777776 34432 34566
Q ss_pred EEEccCCcCC
Q 037699 90 SVFLSHSNMN 99 (203)
Q Consensus 90 ~L~l~~n~~~ 99 (203)
.|++..|.+.
T Consensus 266 ~L~Ls~N~L~ 275 (788)
T PRK15387 266 ELSIFSNPLT 275 (788)
T ss_pred eeeccCCchh
Confidence 6666666654
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.10 E-value=5.4e-10 Score=91.05 Aligned_cols=107 Identities=26% Similarity=0.367 Sum_probs=75.8
Q ss_pred CCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccc
Q 037699 64 IQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGS 143 (203)
Q Consensus 64 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~ 143 (203)
++.|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+.+.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~------------------~l~~L~~LdLs~N~lsg~ 481 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG------------------SITSLEVLDLSYNSFNGS 481 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh------------------CCCCCCEEECCCCCCCCC
Confidence 56777777777777777777777777777777777665555444 567777777777777766
Q ss_pred cchhhhccCCCccEEEccCCccccccCCCCCCC-CCccEEEcCCCCC
Q 037699 144 LFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPP-FQLKELNLESCNL 189 (203)
Q Consensus 144 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~l 189 (203)
.|. .++.+++|+.|++++|.+++.+|..+... .++..+++.+|..
T Consensus 482 iP~-~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 482 IPE-SLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred Cch-HHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 665 56777777778887777777777665542 3556777777764
No 29
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.07 E-value=2.9e-10 Score=64.14 Aligned_cols=61 Identities=33% Similarity=0.406 Sum_probs=55.2
Q ss_pred CCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 128 SSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
++|+.|++++|.+. .++...|..+++|+.|++++|.++...+..+..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 46899999999995 66766899999999999999999987788999999999999999975
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.05 E-value=6.9e-10 Score=86.07 Aligned_cols=169 Identities=31% Similarity=0.416 Sum_probs=124.6
Q ss_pred CcccEEecCCCccCCCCCccccCCC-CccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLT-SLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK 87 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 87 (203)
+.++.+++.++.++ .++.....+. +|+.|+++.|. ....|..+..+++|+.|+++.|.++ .++...+..+.
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~------i~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~ 187 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNK------IESLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSN 187 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccc------hhhhhhhhhccccccccccCCchhh-hhhhhhhhhhh
Confidence 46888999999988 6666667674 99999999995 3344456788999999999999998 66776668889
Q ss_pred ccEEEccCCcCCcchhh--hhhhccccccCCccccc--cccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCC
Q 037699 88 LRSVFLSHSNMNQEISK--ILNIFSTCILDGLEVLE--MTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQN 163 (203)
Q Consensus 88 L~~L~l~~n~~~~~~~~--~~~~~~~~~~~~l~~l~--~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n 163 (203)
|+.+++++|++....+. ....+......+..... .....+.++..+.+.+|.+.. .+. .+..++.++.|++++|
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~-~~~~l~~l~~L~~s~n 265 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPE-SIGNLSNLETLDLSNN 265 (394)
T ss_pred hhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccc-hhccccccceeccccc
Confidence 99999999998876554 22323333333332111 122266778888888888753 233 5678888999999999
Q ss_pred ccccccCCCCCCCCCccEEEcCCCCC
Q 037699 164 SLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 164 ~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
.++... . +....+++.+++++|.+
T Consensus 266 ~i~~i~-~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 266 QISSIS-S-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccccc-c-ccccCccCEEeccCccc
Confidence 998533 3 78888999999999987
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=2.3e-11 Score=87.90 Aligned_cols=129 Identities=25% Similarity=0.245 Sum_probs=90.7
Q ss_pred CCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhcc
Q 037699 31 NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFS 110 (203)
Q Consensus 31 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 110 (203)
.-..|+++++++| ....+.++..-.+.++.|++++|.++ .. ..+..+++|++||+++|.+........
T Consensus 282 TWq~LtelDLS~N------~I~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~---- 349 (490)
T KOG1259|consen 282 TWQELTELDLSGN------LITQIDESVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLAECVGWHL---- 349 (490)
T ss_pred hHhhhhhcccccc------chhhhhhhhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhHhhhhhHh----
Confidence 3456778888888 34445566666778888888888886 32 337788888888888887754221111
Q ss_pred ccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccc-cCCCCCCCCCccEEEcCCCCC
Q 037699 111 TCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN-VSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 111 ~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~l 189 (203)
.+.+++.|.+++|.+. +.. -++.+-+|..||+++|+|... --..++.+|.|+.+.|.+|++
T Consensus 350 ---------------KLGNIKtL~La~N~iE-~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 350 ---------------KLGNIKTLKLAQNKIE-TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred ---------------hhcCEeeeehhhhhHh-hhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 5678888888888774 322 356677788888888888642 124567888888888888888
No 32
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=4e-12 Score=98.43 Aligned_cols=156 Identities=24% Similarity=0.342 Sum_probs=101.1
Q ss_pred EEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEE
Q 037699 13 FLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVF 92 (203)
Q Consensus 13 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 92 (203)
..|++.|.+. ++|..++.+..|+.+.+..| ....+|..+..+..|..++++.|.++ .+|..+..++ |+.+.
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n------~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli 149 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHN------CIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLI 149 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhc------cceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEE
Confidence 3455555554 45555555555555555555 33344555555555555555555555 4444444444 45555
Q ss_pred ccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCC
Q 037699 93 LSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPD 172 (203)
Q Consensus 93 l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 172 (203)
++.|++..... +....++|..|+.+.|.+ ...+. .++++.+|..|.++.|++. ..|++
T Consensus 150 ~sNNkl~~lp~-------------------~ig~~~tl~~ld~s~nei-~slps-ql~~l~slr~l~vrRn~l~-~lp~E 207 (722)
T KOG0532|consen 150 VSNNKLTSLPE-------------------EIGLLPTLAHLDVSKNEI-QSLPS-QLGYLTSLRDLNVRRNHLE-DLPEE 207 (722)
T ss_pred EecCccccCCc-------------------ccccchhHHHhhhhhhhh-hhchH-HhhhHHHHHHHHHhhhhhh-hCCHH
Confidence 55555442211 111457788999999988 46666 6788999999999999988 56777
Q ss_pred CCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699 173 WIPPFQLKELNLESCNLVGNRFPSWLLSQK 202 (203)
Q Consensus 173 l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~ 202 (203)
+..+ .|..||+++|++ ..+|.+|.+|+
T Consensus 208 l~~L-pLi~lDfScNki--s~iPv~fr~m~ 234 (722)
T KOG0532|consen 208 LCSL-PLIRLDFSCNKI--SYLPVDFRKMR 234 (722)
T ss_pred HhCC-ceeeeecccCce--eecchhhhhhh
Confidence 7755 499999999999 88999999986
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.99 E-value=2.6e-10 Score=83.66 Aligned_cols=93 Identities=26% Similarity=0.186 Sum_probs=57.9
Q ss_pred CcccEEecCCCccCCCCCcc----ccCCCCccEEeCCCCcccccccccc--------cccccCCCCCCCEEEccccccCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRG----LGNLTSLRYLDLSANISILQYLSGT--------FSSSVGNLTSIQTLDLSFNNLEG 76 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~--------~~~~l~~~~~L~~L~l~~~~~~~ 76 (203)
++|++++||+|.+....++. +..+..|++|.+.+|.+.+.+-... ......+-++|+++..+.|.+..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 48888999998887554443 3467888888888886332211110 12223444567788777777652
Q ss_pred ----cchhhhhccCCccEEEccCCcCCcc
Q 037699 77 ----KIATSFGRLCKLRSVFLSHSNMNQE 101 (203)
Q Consensus 77 ----~~~~~~~~l~~L~~L~l~~n~~~~~ 101 (203)
.++..+...+.|+.+.+..|.+...
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~e 200 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPE 200 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCc
Confidence 2344566667777777777766543
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=1.2e-10 Score=84.27 Aligned_cols=105 Identities=27% Similarity=0.329 Sum_probs=58.0
Q ss_pred CCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCc
Q 037699 60 NLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNT 139 (203)
Q Consensus 60 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~ 139 (203)
.+..|.++|+++|.|+ .+-.++.-.|+++.|++++|.+..... ++ .+++|+.|++++|.
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~n--La------------------~L~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQN--LA------------------ELPQLQLLDLSGNL 340 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeehh--hh------------------hcccceEeecccch
Confidence 4455666666666665 455555666666666666666543221 11 35566666666666
Q ss_pred cccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 140 LFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 140 l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
+. .... +-..+.+.+.|.+.+|.+.. ...+..+=+|..|++.+|+|
T Consensus 341 Ls-~~~G-wh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 341 LA-ECVG-WHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred hH-hhhh-hHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccch
Confidence 64 2222 33455666666666666542 12233344566666666665
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.96 E-value=9.8e-10 Score=61.94 Aligned_cols=59 Identities=41% Similarity=0.479 Sum_probs=36.5
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNN 73 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 73 (203)
+|++|++++|.+....+..+..+++|++|++++|. +....+..+..+++|+++++++|.
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-----l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-----LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-----ESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-----cCccCHHHHcCCCCCCEEeCcCCc
Confidence 56666666666664444566666666666666664 555555556666666666666654
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.1e-09 Score=81.16 Aligned_cols=163 Identities=22% Similarity=0.165 Sum_probs=101.4
Q ss_pred ccCCCCccEEeCCCCcccccccccccc-cccCCCCCCCEEEccccccC--ccchhhhhccCCccEEEccCCcCCcchhhh
Q 037699 29 LGNLTSLRYLDLSANISILQYLSGTFS-SSVGNLTSIQTLDLSFNNLE--GKIATSFGRLCKLRSVFLSHSNMNQEISKI 105 (203)
Q Consensus 29 ~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 105 (203)
-.++.+|++..+.++. ...... +....+++++.|+++.|-+. ..+......+++|+.|+++.|++.-.....
T Consensus 117 Qsn~kkL~~IsLdn~~-----V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~ 191 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYR-----VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN 191 (505)
T ss_pred hhhHHhhhheeecCcc-----ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc
Confidence 3567889999999874 222211 46678999999999999887 345566788999999999999886432221
Q ss_pred h----hhccccccC--Cccccccccc--cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccccc-CCCCCCC
Q 037699 106 L----NIFSTCILD--GLEVLEMTEW--QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNV-SPDWIPP 176 (203)
Q Consensus 106 ~----~~~~~~~~~--~l~~l~~~~~--~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~l~~~ 176 (203)
. ..+....+. ++..-++... .+|+++.|++..|..-..... ...-++.|+.|||++|.+.... ......+
T Consensus 192 ~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~-~~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 192 TTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT-STKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred chhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc-hhhhhhHHhhccccCCcccccccccccccc
Confidence 1 111111111 1111111111 567888888888742111111 2345667888888888776432 2345667
Q ss_pred CCccEEEcCCCCCCCCCCchh
Q 037699 177 FQLKELNLESCNLVGNRFPSW 197 (203)
Q Consensus 177 ~~L~~L~l~~n~l~~~~~p~~ 197 (203)
+.|+.|+++.+.+++-..|+.
T Consensus 271 ~~L~~Lnls~tgi~si~~~d~ 291 (505)
T KOG3207|consen 271 PGLNQLNLSSTGIASIAEPDV 291 (505)
T ss_pred cchhhhhccccCcchhcCCCc
Confidence 888888888888865555554
No 37
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.70 E-value=3.8e-09 Score=77.61 Aligned_cols=14 Identities=57% Similarity=0.619 Sum_probs=9.4
Q ss_pred CcccEEecCCCccC
Q 037699 9 DHLVFLDLSLNNFQ 22 (203)
Q Consensus 9 ~~L~~L~l~~~~~~ 22 (203)
..++.+++++|.+.
T Consensus 30 ~s~~~l~lsgnt~G 43 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFG 43 (382)
T ss_pred CceEEEeccCCchh
Confidence 35667777777665
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.58 E-value=1.3e-07 Score=73.49 Aligned_cols=166 Identities=27% Similarity=0.352 Sum_probs=115.0
Q ss_pred EEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCC-CCCEEEccccccCccchhhhhccCCccEE
Q 037699 13 FLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLT-SIQTLDLSFNNLEGKIATSFGRLCKLRSV 91 (203)
Q Consensus 13 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 91 (203)
.++...+.+. .....+..+..++.+++.++. ...++....... +|+.+++++|.+. .++..+..++.|+.|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~------i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L 168 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNN------ITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNL 168 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcc------cccCccccccchhhcccccccccchh-hhhhhhhcccccccc
Confidence 3556666553 223344556788999999984 444556566664 8999999999998 666778999999999
Q ss_pred EccCCcCCcchhh--hhhhccccccCCccccccccc--cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699 92 FLSHSNMNQEISK--ILNIFSTCILDGLEVLEMTEW--QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL 167 (203)
Q Consensus 92 ~l~~n~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~--~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~ 167 (203)
+++.|++....+. ....+....+.+.+.-.++.. ....|+.+.++.|... ..+. .+..+.++..+.+..|++..
T Consensus 169 ~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~-~~~~~~~l~~l~l~~n~~~~ 246 (394)
T COG4886 169 DLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLS-SLSNLKNLSGLELSNNKLED 246 (394)
T ss_pred ccCCchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecch-hhhhcccccccccCCceeee
Confidence 9999999876654 233344444444444444443 3445888888888532 2233 46677888888888888763
Q ss_pred ccCCCCCCCCCccEEEcCCCCC
Q 037699 168 NVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 168 ~~~~~l~~~~~L~~L~l~~n~l 189 (203)
.+..+..++.+++|++++|.+
T Consensus 247 -~~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 247 -LPESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred -ccchhccccccceeccccccc
Confidence 245567777899999999998
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.54 E-value=1.6e-07 Score=79.09 Aligned_cols=82 Identities=30% Similarity=0.328 Sum_probs=54.1
Q ss_pred cccEEecCCCc--cCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699 10 HLVFLDLSLNN--FQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK 87 (203)
Q Consensus 10 ~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 87 (203)
+|++|-+.+|. +.....+.|..++.|+.||+++|. -...+|..++.+.+|++|+++++.+. .+|..++++.+
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~-----~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNS-----SLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKK 619 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCC-----ccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHh
Confidence 56666666664 443444456667777777777665 56666777777777777777777766 66777777777
Q ss_pred ccEEEccCCc
Q 037699 88 LRSVFLSHSN 97 (203)
Q Consensus 88 L~~L~l~~n~ 97 (203)
|.+|++..+.
T Consensus 620 L~~Lnl~~~~ 629 (889)
T KOG4658|consen 620 LIYLNLEVTG 629 (889)
T ss_pred hheecccccc
Confidence 7777766554
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=7e-09 Score=75.08 Aligned_cols=170 Identities=17% Similarity=0.176 Sum_probs=96.9
Q ss_pred cccEEecCCCccCCC-CCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccc-cCc-cchhhhhccC
Q 037699 10 HLVFLDLSLNNFQGP-IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNN-LEG-KIATSFGRLC 86 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~~~l~ 86 (203)
.++.||++...++.. +...+.++.+|+.|.+.+++ +.+.+...+.+..+|+.+++++|. ++. ...--+..+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-----LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-----LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-----cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhh
Confidence 366677777666521 23344566677777777775 666666666666777777776653 221 1112245566
Q ss_pred CccEEEccCCcCCcchhhhh-hhccccccCCccccccc--------------cccCCCCCEEEccCCccccccchhhhcc
Q 037699 87 KLRSVFLSHSNMNQEISKIL-NIFSTCILDGLEVLEMT--------------EWQLSSLDSVNLSNNTLFGSLFEIHFAK 151 (203)
Q Consensus 87 ~L~~L~l~~n~~~~~~~~~~-~~~~~~~~~~l~~l~~~--------------~~~~~~L~~L~l~~n~l~~~~~~~~l~~ 151 (203)
.|..|+++.|.+.+...... +.. ...+..+.+. ...++.+.+||+++|..........+..
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hi----se~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHI----SETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhh----chhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 67777776665554332211 100 0111111100 1167889999998875433333336778
Q ss_pred CCCccEEEccCCccc-cccCCCCCCCCCccEEEcCCCC
Q 037699 152 LSKLKYFDVSQNSLT-LNVSPDWIPPFQLKELNLESCN 188 (203)
Q Consensus 152 ~~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~ 188 (203)
++.|++|.++.|..- .+..-.+...|+|.+|++.++-
T Consensus 337 f~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 337 FNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred cchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 888999999888532 1112235667789999887753
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=2.5e-08 Score=72.29 Aligned_cols=178 Identities=22% Similarity=0.149 Sum_probs=101.9
Q ss_pred cCCcccEEecCCCccCC--CCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccC-ccchhhhh
Q 037699 7 LSDHLVFLDLSLNNFQG--PIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLE-GKIATSFG 83 (203)
Q Consensus 7 ~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~ 83 (203)
...+++.+|+.+|.+.. ++...+.+++.|+.|+++.|. +...+...--...+|+++.+.++.+. ...-....
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-----L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-----LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-----CCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence 34578889999998874 244556789999999999996 33322221134558889988887765 34455667
Q ss_pred ccCCccEEEccCCcCCcchhh-----hhh-hccccc-cCCccccccccc----cCCCCCEEEccCCccccccchhhhccC
Q 037699 84 RLCKLRSVFLSHSNMNQEISK-----ILN-IFSTCI-LDGLEVLEMTEW----QLSSLDSVNLSNNTLFGSLFEIHFAKL 152 (203)
Q Consensus 84 ~l~~L~~L~l~~n~~~~~~~~-----~~~-~~~~~~-~~~l~~l~~~~~----~~~~L~~L~l~~n~l~~~~~~~~l~~~ 152 (203)
.+|++++++++.|........ .+. ...... ..+........+ .++++..+.++.|.+.+.-..+.+...
T Consensus 144 ~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~ 223 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF 223 (418)
T ss_pred cchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCC
Confidence 788888888888843221100 000 000000 011111000000 456677777777766433333344555
Q ss_pred CCccEEEccCCcccccc-CCCCCCCCCccEEEcCCCCC
Q 037699 153 SKLKYFDVSQNSLTLNV-SPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 153 ~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~l 189 (203)
+.+..|+|+.+++.... .+.+...++|..|.+..|++
T Consensus 224 p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 224 PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 66667777777665432 24556666777777777766
No 42
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.9e-09 Score=77.99 Aligned_cols=169 Identities=19% Similarity=0.277 Sum_probs=106.0
Q ss_pred ccEEecCCCccCCC-CCccccCC-CCccEEeCCCCcccccccc-cccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699 11 LVFLDLSLNNFQGP-IPRGLGNL-TSLRYLDLSANISILQYLS-GTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK 87 (203)
Q Consensus 11 L~~L~l~~~~~~~~-~~~~~~~l-~~L~~L~l~~~~~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 87 (203)
+..+.+....+... +.+.+.-+ ..++++|+++.. ++ ..+...++.+.+|+.+.+.++.+.+.+...+.....
T Consensus 161 V~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~-----it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~ 235 (419)
T KOG2120|consen 161 VIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSV-----ITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSN 235 (419)
T ss_pred eEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhh-----eeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccc
Confidence 34455554444432 33333333 348999999975 33 234455677889999999999999888888999999
Q ss_pred ccEEEccCCcC-CcchhhhhhhccccccCCccccccccc-------------cCCCCCEEEccCCcc--ccccchhhhcc
Q 037699 88 LRSVFLSHSNM-NQEISKILNIFSTCILDGLEVLEMTEW-------------QLSSLDSVNLSNNTL--FGSLFEIHFAK 151 (203)
Q Consensus 88 L~~L~l~~n~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~-------------~~~~L~~L~l~~n~l--~~~~~~~~l~~ 151 (203)
|..++++.+.- +....... +. .+..+..+.+..+ --+++..|+++++.- .+....-....
T Consensus 236 L~~lnlsm~sG~t~n~~~ll--~~--scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 236 LVRLNLSMCSGFTENALQLL--LS--SCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred ceeeccccccccchhHHHHH--HH--hhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 99999987643 22222111 00 0222333222211 225677888877632 11222224568
Q ss_pred CCCccEEEccCC-ccccccCCCCCCCCCccEEEcCCCC
Q 037699 152 LSKLKYFDVSQN-SLTLNVSPDWIPPFQLKELNLESCN 188 (203)
Q Consensus 152 ~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~n~ 188 (203)
++++..|||++| .++......+.+++.|++|.++.|-
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 899999999987 4554445567788899999999874
No 43
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.39 E-value=2.3e-07 Score=66.58 Aligned_cols=169 Identities=18% Similarity=0.122 Sum_probs=86.6
Q ss_pred cCCcccEEecCCCccCCCCCc----cccCCCCccEEeCCCCcccccccccccc---------cccCCCCCCCEEEccccc
Q 037699 7 LSDHLVFLDLSLNNFQGPIPR----GLGNLTSLRYLDLSANISILQYLSGTFS---------SSVGNLTSIQTLDLSFNN 73 (203)
Q Consensus 7 ~~~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~---------~~l~~~~~L~~L~l~~~~ 73 (203)
.|++++..++|+|.+....|+ .+++-..|.+|.+++|...+.+- +.+. .....-+.|+++....|.
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG-~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAG-GRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccch-hHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 345777777777776654443 33455667777777775222211 1111 112234566666666666
Q ss_pred cCc-c---chhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccc---cch
Q 037699 74 LEG-K---IATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGS---LFE 146 (203)
Q Consensus 74 ~~~-~---~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~---~~~ 146 (203)
+.. . .+..+..-..|+++.+..|.+.......+..... ..+.+|+.|++++|.++-. ...
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl-------------~y~~~LevLDlqDNtft~~gS~~La 235 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGL-------------FYSHSLEVLDLQDNTFTLEGSRYLA 235 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHH-------------HHhCcceeeeccccchhhhhHHHHH
Confidence 541 1 1112222235666666666665443333221111 1456777788887766521 122
Q ss_pred hhhccCCCccEEEccCCccccccCCCC------CCCCCccEEEcCCCCC
Q 037699 147 IHFAKLSKLKYFDVSQNSLTLNVSPDW------IPPFQLKELNLESCNL 189 (203)
Q Consensus 147 ~~l~~~~~L~~L~l~~n~~~~~~~~~l------~~~~~L~~L~l~~n~l 189 (203)
.++..++.|..|.+.+|.++....+.+ ...++|..|...+|..
T Consensus 236 ~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 236 DALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred HHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 245667777778887777764322211 1233555555555544
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.37 E-value=2.9e-09 Score=85.37 Aligned_cols=40 Identities=30% Similarity=0.398 Sum_probs=17.4
Q ss_pred ccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcC
Q 037699 57 SVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNM 98 (203)
Q Consensus 57 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 98 (203)
.+.-++.++.|++++|+++.. ..+..+++|++||+++|.+
T Consensus 182 SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L 221 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCL 221 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchh
Confidence 333344444444444444411 1344444444455444443
No 45
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.37 E-value=3.6e-07 Score=76.95 Aligned_cols=87 Identities=33% Similarity=0.395 Sum_probs=74.6
Q ss_pred ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhh
Q 037699 4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFG 83 (203)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 83 (203)
+|..++.|++||+++|.-.+.+|..++.+-+|++|+++++ ....+|..+.++..|.+|++..+......+....
T Consensus 566 ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t------~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~ 639 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT------GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILL 639 (889)
T ss_pred HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC------CccccchHHHHHHhhheeccccccccccccchhh
Confidence 4677889999999999777799999999999999999998 4558899999999999999998876645566666
Q ss_pred ccCCccEEEccCC
Q 037699 84 RLCKLRSVFLSHS 96 (203)
Q Consensus 84 ~l~~L~~L~l~~n 96 (203)
.+++|++|.+...
T Consensus 640 ~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 640 ELQSLRVLRLPRS 652 (889)
T ss_pred hcccccEEEeecc
Confidence 7999999988654
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=1.8e-08 Score=80.94 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=30.4
Q ss_pred CCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcc
Q 037699 62 TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQE 101 (203)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 101 (203)
-.|.+.+.++|.++ .+-.++.-++-+++|++++|++...
T Consensus 164 n~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v 202 (1096)
T KOG1859|consen 164 NKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV 202 (1096)
T ss_pred hhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh
Confidence 35677777888776 6667778888899999999988754
No 47
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.22 E-value=8.4e-07 Score=46.12 Aligned_cols=36 Identities=28% Similarity=0.525 Sum_probs=15.6
Q ss_pred CCCEEEccCCccccccchhhhccCCCccEEEccCCccc
Q 037699 129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166 (203)
Q Consensus 129 ~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~ 166 (203)
+|++|++++|.+. .++. .++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGG-HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCc-hHhCCCCCCEEEecCCCCC
Confidence 3445555555553 2332 2444555555555555444
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.19 E-value=1.6e-07 Score=60.60 Aligned_cols=104 Identities=22% Similarity=0.230 Sum_probs=52.3
Q ss_pred CCEEEccccccCccchhhhhc---cCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCcc
Q 037699 64 IQTLDLSFNNLEGKIATSFGR---LCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTL 140 (203)
Q Consensus 64 L~~L~l~~~~~~~~~~~~~~~---l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l 140 (203)
+..++++.|.+. .++..... ...|...++++|.+..+.+++.. .++..+.+++++|.+
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~------------------kf~t~t~lNl~~nei 89 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTI------------------KFPTATTLNLANNEI 89 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhh------------------ccchhhhhhcchhhh
Confidence 444555555544 33333332 23344456666666555444433 344555666666666
Q ss_pred ccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 141 FGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 141 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
+ ++|. .+..++.|+.++++.|.+.. .+..+..+-++-.|+..+|.+
T Consensus 90 s-dvPe-E~Aam~aLr~lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 90 S-DVPE-ELAAMPALRSLNLRFNPLNA-EPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred h-hchH-HHhhhHHhhhcccccCcccc-chHHHHHHHhHHHhcCCCCcc
Confidence 3 4444 25556666666666666553 233333344555555555554
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.17 E-value=3.8e-07 Score=71.30 Aligned_cols=87 Identities=28% Similarity=0.267 Sum_probs=51.1
Q ss_pred ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhcc
Q 037699 6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRL 85 (203)
Q Consensus 6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 85 (203)
..+++++.+++.+|.+. .+...+..+.+|++|++++|. +... ..+..++.|+.|++.+|.+.. ...+..+
T Consensus 92 ~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~-----I~~i--~~l~~l~~L~~L~l~~N~i~~--~~~~~~l 161 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNK-----ITKL--EGLSTLTLLKELNLSGNLISD--ISGLESL 161 (414)
T ss_pred ccccceeeeeccccchh-hcccchhhhhcchheeccccc-----cccc--cchhhccchhhheeccCcchh--ccCCccc
Confidence 34456677777777766 233335567777777777774 3333 224455557777777777652 1233446
Q ss_pred CCccEEEccCCcCCcch
Q 037699 86 CKLRSVFLSHSNMNQEI 102 (203)
Q Consensus 86 ~~L~~L~l~~n~~~~~~ 102 (203)
..|+.+++++|.+....
T Consensus 162 ~~L~~l~l~~n~i~~ie 178 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDIE 178 (414)
T ss_pred hhhhcccCCcchhhhhh
Confidence 66777777777665433
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=5.9e-06 Score=42.92 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=23.4
Q ss_pred CCCEEEccccccCccchhhhhccCCccEEEccCCcCCc
Q 037699 63 SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQ 100 (203)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 100 (203)
+|++|++++|.++ .+|..++.+++|+.|++++|++..
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence 5667777777776 455556777777777777776654
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.13 E-value=3.6e-07 Score=71.44 Aligned_cols=107 Identities=27% Similarity=0.345 Sum_probs=56.0
Q ss_pred cCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccC
Q 037699 58 VGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSN 137 (203)
Q Consensus 58 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~ 137 (203)
+..+.+++.+++.+|.+. .+...+..+++|+++++++|.+.....- . .++.|+.|++.+
T Consensus 91 l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~l-------------~-------~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEGL-------------S-------TLTLLKELNLSG 149 (414)
T ss_pred cccccceeeeeccccchh-hcccchhhhhcchheeccccccccccch-------------h-------hccchhhheecc
Confidence 455566666666666665 3323255566666666666666542111 0 334466666666
Q ss_pred CccccccchhhhccCCCccEEEccCCccccccC-CCCCCCCCccEEEcCCCCC
Q 037699 138 NTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVS-PDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 138 n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l 189 (203)
|.+. .+. .+..+..|+.+++++|.++..-. . ...+.+++.+.+.+|.+
T Consensus 150 N~i~-~~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 150 NLIS-DIS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred Ccch-hcc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 6653 222 23345566666666666553211 1 34455555556655554
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=2.2e-06 Score=61.71 Aligned_cols=186 Identities=18% Similarity=0.186 Sum_probs=104.3
Q ss_pred CCcccEEecCCCccCCC----CCccccCCCCccEEeCCCCcccccccccc-------cccccCCCCCCCEEEccccccCc
Q 037699 8 SDHLVFLDLSLNNFQGP----IPRGLGNLTSLRYLDLSANISILQYLSGT-------FSSSVGNLTSIQTLDLSFNNLEG 76 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-------~~~~l~~~~~L~~L~l~~~~~~~ 76 (203)
...++.+++|+|-+..+ +...+..-.+|+..+++.-- +....+. +.+.+-+++.|+.+++++|.+..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f--tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF--TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh--hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 34677889999887743 33334445666666665431 0001111 22234566777777777777765
Q ss_pred cchhh----hhccCCccEEEccCCcCCcchhhhhh----------------hccccccCCcccccccc--c-----cCCC
Q 037699 77 KIATS----FGRLCKLRSVFLSHSNMNQEISKILN----------------IFSTCILDGLEVLEMTE--W-----QLSS 129 (203)
Q Consensus 77 ~~~~~----~~~l~~L~~L~l~~n~~~~~~~~~~~----------------~~~~~~~~~l~~l~~~~--~-----~~~~ 129 (203)
..|.. +..-..|.+|.+.+|.+......-++ .+....+...+....+. + .-..
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~ 186 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHEN 186 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcC
Confidence 44433 34455677777777765433221111 00111111111111110 1 1147
Q ss_pred CCEEEccCCccccccch----hhhccCCCccEEEccCCcccccc----CCCCCCCCCccEEEcCCCCCCCCCCc
Q 037699 130 LDSVNLSNNTLFGSLFE----IHFAKLSKLKYFDVSQNSLTLNV----SPDWIPPFQLKELNLESCNLVGNRFP 195 (203)
Q Consensus 130 L~~L~l~~n~l~~~~~~----~~l~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~l~~~~~p 195 (203)
|+.+.+..|.+.-.... .-+..+.+|+.||+++|.++... ...+..|+.|++|.+..|-++..-..
T Consensus 187 lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~ 260 (388)
T COG5238 187 LKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVK 260 (388)
T ss_pred ceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHH
Confidence 89999999988532111 12357889999999999988432 34456788899999999988644333
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.01 E-value=2.6e-07 Score=59.62 Aligned_cols=89 Identities=25% Similarity=0.242 Sum_probs=59.0
Q ss_pred cccEEecCCCccCCCCCcccc---CCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccC
Q 037699 10 HLVFLDLSLNNFQGPIPRGLG---NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLC 86 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~---~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 86 (203)
.+..++++.|.+. .++.... +...|+..++++|. +.+..+..-.+.+.+.+++++.|.++ .+|..+..|+
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~-----fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~ 100 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNG-----FKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMP 100 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccch-----hhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhH
Confidence 3455777777765 3444433 33456666888885 44443333344557888888888887 7788888888
Q ss_pred CccEEEccCCcCCcchhhh
Q 037699 87 KLRSVFLSHSNMNQEISKI 105 (203)
Q Consensus 87 ~L~~L~l~~n~~~~~~~~~ 105 (203)
.|+.++++.|++.......
T Consensus 101 aLr~lNl~~N~l~~~p~vi 119 (177)
T KOG4579|consen 101 ALRSLNLRFNPLNAEPRVI 119 (177)
T ss_pred HhhhcccccCccccchHHH
Confidence 8888888888877554433
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.96 E-value=8.1e-06 Score=67.38 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=34.4
Q ss_pred cCCCCCEEEccCCcccccc--ch---hhhccCCCccEEEccCCccccccCCC-CCCCCCccEEEcC
Q 037699 126 QLSSLDSVNLSNNTLFGSL--FE---IHFAKLSKLKYFDVSQNSLTLNVSPD-WIPPFQLKELNLE 185 (203)
Q Consensus 126 ~~~~L~~L~l~~n~l~~~~--~~---~~l~~~~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~L~l~ 185 (203)
.+++|+.||++.....+.. .. .....++.|+.||.+++.++....+. +...++|+.+.+-
T Consensus 218 ~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 218 NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhh
Confidence 6778888888776553221 11 12235678888888888777544332 2344455555433
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.96 E-value=0.00012 Score=56.57 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=47.6
Q ss_pred CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEcccc-ccCccchhhhhccC
Q 037699 8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFN-NLEGKIATSFGRLC 86 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~l~ 86 (203)
+++++.|++++|.++ .+|. -..+|++|.++++. ....+|..+. .+|+.|.+++| .+. .+|.
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~-----nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------ 112 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCN-----NLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------ 112 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCC-----CcccCCchhh--hhhhheEccCccccc-cccc------
Confidence 358889999999777 4552 12458899998875 4445555442 47889999888 443 4443
Q ss_pred CccEEEccCCcC
Q 037699 87 KLRSVFLSHSNM 98 (203)
Q Consensus 87 ~L~~L~l~~n~~ 98 (203)
.|+.|++..+..
T Consensus 113 sLe~L~L~~n~~ 124 (426)
T PRK15386 113 SVRSLEIKGSAT 124 (426)
T ss_pred ccceEEeCCCCC
Confidence 466677665543
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.95 E-value=3.7e-05 Score=53.04 Aligned_cols=128 Identities=20% Similarity=0.164 Sum_probs=78.6
Q ss_pred ccEEecCCCccCCCCCcccc-CCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699 11 LVFLDLSLNNFQGPIPRGLG-NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89 (203)
Q Consensus 11 L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (203)
=+.+++.+..+... .. ++ -+.+...+++++|. +... ..+..++.|++|.+..|.|+...|.--..+++|+
T Consensus 21 e~e~~LR~lkip~i-en-lg~~~d~~d~iDLtdNd-----l~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~ 91 (233)
T KOG1644|consen 21 ERELDLRGLKIPVI-EN-LGATLDQFDAIDLTDND-----LRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLK 91 (233)
T ss_pred ccccccccccccch-hh-ccccccccceecccccc-----hhhc--ccCCCccccceEEecCCcceeeccchhhhccccc
Confidence 34566666554411 11 11 13456678888885 3322 3466778889999999998855555555667888
Q ss_pred EEEccCCcCCcchh-hhhhhccccccCCccccccccccCCCCCEEEccCCcccccc--chhhhccCCCccEEEccCCcc
Q 037699 90 SVFLSHSNMNQEIS-KILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSL--FEIHFAKLSKLKYFDVSQNSL 165 (203)
Q Consensus 90 ~L~l~~n~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~~~~L~~L~l~~n~~ 165 (203)
.|.+.+|.+..... .-++ .+|.|++|.+-+|.....- -...+..+++++.||+++-..
T Consensus 92 ~L~LtnNsi~~l~dl~pLa------------------~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 92 TLILTNNSIQELGDLDPLA------------------SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred eEEecCcchhhhhhcchhc------------------cCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 88888887765322 1111 5678888888887664211 112345677888888776543
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=6.4e-06 Score=67.94 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=17.8
Q ss_pred CCCCCEEEccccccC-ccchhhhhccCCccEEEccCCcCC
Q 037699 61 LTSIQTLDLSFNNLE-GKIATSFGRLCKLRSVFLSHSNMN 99 (203)
Q Consensus 61 ~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~n~~~ 99 (203)
+|+|+.|.+++-.+. +..-....++++|..||+++..+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~ 186 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS 186 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc
Confidence 445555555543332 122233344555555555555443
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=5.6e-05 Score=55.37 Aligned_cols=174 Identities=22% Similarity=0.193 Sum_probs=95.7
Q ss_pred ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCccccccccc-ccccccCCCCCCCEEEccccccCc--cchh
Q 037699 4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSG-TFSSSVGNLTSIQTLDLSFNNLEG--KIAT 80 (203)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~--~~~~ 80 (203)
+...+++|++|+++.|.+...+...-..+.+|+.|.+.+.. +.. .....+..++.++.+.++.|.+.. ....
T Consensus 92 ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~-----L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~ 166 (418)
T KOG2982|consen 92 ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG-----LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDN 166 (418)
T ss_pred HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC-----CChhhhhhhhhcchhhhhhhhccchhhhhccccc
Confidence 44677899999999999885544333567899999999986 433 334446677788888888875431 1111
Q ss_pred hhhccC-CccEEEccCCcCC--cchhhhhhhc---cccc-cCC-ccccccc--cccCCCCCEEEccCCccccccc-hhhh
Q 037699 81 SFGRLC-KLRSVFLSHSNMN--QEISKILNIF---STCI-LDG-LEVLEMT--EWQLSSLDSVNLSNNTLFGSLF-EIHF 149 (203)
Q Consensus 81 ~~~~l~-~L~~L~l~~n~~~--~~~~~~~~~~---~~~~-~~~-l~~l~~~--~~~~~~L~~L~l~~n~l~~~~~-~~~l 149 (203)
...... .+++++...|... .........| .... +.+ ++..... ....+.+..|+++.+++ |++. ...+
T Consensus 167 c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~i-dswasvD~L 245 (418)
T KOG2982|consen 167 CIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNI-DSWASVDAL 245 (418)
T ss_pred cccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccccc-ccHHHHHHH
Confidence 111111 2333333333210 0000000000 0000 000 0011100 11567778899999988 4443 3467
Q ss_pred ccCCCccEEEccCCccccccCC------CCCCCCCccEEE
Q 037699 150 AKLSKLKYFDVSQNSLTLNVSP------DWIPPFQLKELN 183 (203)
Q Consensus 150 ~~~~~L~~L~l~~n~~~~~~~~------~l~~~~~L~~L~ 183 (203)
.+++.+.-|.++.+.+...... .++.+++++.|+
T Consensus 246 n~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 246 NGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred cCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 8889999999999888643221 134566777765
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.71 E-value=7.8e-05 Score=51.50 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=77.6
Q ss_pred CCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCcccc
Q 037699 63 SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFG 142 (203)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~ 142 (203)
....+|+++|.+. .-..+..++.|.+|.+..|.+....+.... .+++|+.|.+.+|.+..
T Consensus 43 ~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~------------------~~p~l~~L~LtnNsi~~ 102 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDT------------------FLPNLKTLILTNNSIQE 102 (233)
T ss_pred ccceecccccchh--hcccCCCccccceEEecCCcceeeccchhh------------------hccccceEEecCcchhh
Confidence 5678899999886 224567788999999999999876665443 56789999999998853
Q ss_pred ccchhhhccCCCccEEEccCCcccccc---CCCCCCCCCccEEEcCCC
Q 037699 143 SLFEIHFAKLSKLKYFDVSQNSLTLNV---SPDWIPPFQLKELNLESC 187 (203)
Q Consensus 143 ~~~~~~l~~~~~L~~L~l~~n~~~~~~---~~~l~~~~~L~~L~l~~n 187 (203)
-.....+..|++|+.|.+-+|.++... .=.+..+|+|+.||+++=
T Consensus 103 l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 103 LGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 322235678999999999999887421 112456889999998753
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.33 E-value=0.002 Score=41.72 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=12.5
Q ss_pred cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCC
Q 037699 5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSA 42 (203)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 42 (203)
|..+.+|+.+.+.. .+.......+..+.+++.+.+..
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~ 44 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN 44 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS
T ss_pred HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc
Confidence 33344455555443 22223333444444455554444
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=1.6e-05 Score=57.58 Aligned_cols=83 Identities=13% Similarity=0.060 Sum_probs=43.8
Q ss_pred CCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCcccc
Q 037699 63 SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFG 142 (203)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~ 142 (203)
+.+.|+.-+|.+++. +....|+.|+.|.++.|+++...+-. .+++|++|+|..|.+.+
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~--------------------rCtrLkElYLRkN~I~s 77 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQ--------------------RCTRLKELYLRKNCIES 77 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHH--------------------HHHHHHHHHHHhccccc
Confidence 444555555555422 23455666666666666665432211 45556666666666542
Q ss_pred ccchhhhccCCCccEEEccCCcccc
Q 037699 143 SLFEIHFAKLSKLKYFDVSQNSLTL 167 (203)
Q Consensus 143 ~~~~~~l~~~~~L~~L~l~~n~~~~ 167 (203)
-.-...+.++++|+.|+|..|.-.+
T Consensus 78 ldEL~YLknlpsLr~LWL~ENPCc~ 102 (388)
T KOG2123|consen 78 LDELEYLKNLPSLRTLWLDENPCCG 102 (388)
T ss_pred HHHHHHHhcCchhhhHhhccCCccc
Confidence 2222245566666666666665443
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.15 E-value=0.00029 Score=50.51 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=35.1
Q ss_pred CCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEcccc--ccCccchhhhhccCCccEEEccCCcCC
Q 037699 25 IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFN--NLEGKIATSFGRLCKLRSVFLSHSNMN 99 (203)
Q Consensus 25 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~n~~~ 99 (203)
+......+..++.+.+.+.. ++.. ..+..+++|++|.++.| .+...++.....+++|++++++.|++.
T Consensus 35 ~~gl~d~~~~le~ls~~n~g-----ltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVG-----LTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccccccchhhhhhhccc-----eeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33333444555555555543 2221 22345566666666666 444444444444566666666666654
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.14 E-value=0.0037 Score=48.55 Aligned_cols=149 Identities=10% Similarity=0.022 Sum_probs=78.5
Q ss_pred CCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhcc
Q 037699 31 NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFS 110 (203)
Q Consensus 31 ~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 110 (203)
.+.+++.|++++|. ...+|. + -.+|+.|.+++|.-...+|..+ ..+|+.|++.+|......|..+..+.
T Consensus 50 ~~~~l~~L~Is~c~------L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCD------IESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCC------CcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccccceEE
Confidence 46889999999884 333342 1 1268999998765544566544 25799999998832222333222211
Q ss_pred ccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCC--
Q 037699 111 TCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCN-- 188 (203)
Q Consensus 111 ~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-- 188 (203)
.. ......+. .-.++|+.|.+..+........ .-.-.++|+.|++++|... ..|+.+. .+|+.|.++.+.
T Consensus 119 L~-~n~~~~L~---~LPssLk~L~I~~~n~~~~~~l-p~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n~~~ 190 (426)
T PRK15386 119 IK-GSATDSIK---NVPNGLTSLSINSYNPENQARI-DNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIEQKT 190 (426)
T ss_pred eC-CCCCcccc---cCcchHhheecccccccccccc-ccccCCcccEEEecCCCcc-cCccccc--ccCcEEEecccccc
Confidence 10 00000000 0124566776643221100000 0001257999999988755 2333222 488999988763
Q ss_pred ---CCCCCCchhh
Q 037699 189 ---LVGNRFPSWL 198 (203)
Q Consensus 189 ---l~~~~~p~~~ 198 (203)
+....+|+.+
T Consensus 191 sLeI~~~sLP~nl 203 (426)
T PRK15386 191 TWNISFEGFPDGL 203 (426)
T ss_pred cccCccccccccc
Confidence 3334555544
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.09 E-value=0.00043 Score=49.65 Aligned_cols=86 Identities=21% Similarity=0.272 Sum_probs=57.3
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCc-cchhhhhccCCc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEG-KIATSFGRLCKL 88 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L 88 (203)
.++.+++.++.++ .-..+..+++|+.|.++.|.. +....++-....+++|+++++++|++.. ........+.+|
T Consensus 44 ~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~---~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 44 ELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYR---RVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred chhhhhhhcccee--ecccCCCcchhhhhcccCCcc---cccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 4555555555554 223456788999999999821 0455555556677999999999999872 222334566778
Q ss_pred cEEEccCCcCCc
Q 037699 89 RSVFLSHSNMNQ 100 (203)
Q Consensus 89 ~~L~l~~n~~~~ 100 (203)
..|++..|....
T Consensus 119 ~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 119 KSLDLFNCSVTN 130 (260)
T ss_pred hhhhcccCCccc
Confidence 888888876554
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.07 E-value=0.0046 Score=39.95 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=25.2
Q ss_pred cccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEcc
Q 037699 28 GLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLS 94 (203)
Q Consensus 28 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 94 (203)
.+..+.+|+.+.+... +.......+..+.+++.+.+..+ +...-...|..+..++.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~~------~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPNT------IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETST--------EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECCC------eeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 4555666666666543 44444455555656666666553 332222334444455555553
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.66 E-value=0.00053 Score=29.74 Aligned_cols=19 Identities=37% Similarity=0.474 Sum_probs=9.2
Q ss_pred ccEEEcCCCCCCCCCCchhhh
Q 037699 179 LKELNLESCNLVGNRFPSWLL 199 (203)
Q Consensus 179 L~~L~l~~n~l~~~~~p~~~~ 199 (203)
|++|++++|.+ ..+|.++.
T Consensus 2 L~~Ldls~n~l--~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNL--TSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEE--SEEGTTTT
T ss_pred ccEEECCCCcC--EeCChhhc
Confidence 45555555555 24454443
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.13 E-value=0.0019 Score=51.50 Aligned_cols=15 Identities=20% Similarity=0.142 Sum_probs=7.2
Q ss_pred ccCCCccEEEccCCc
Q 037699 150 AKLSKLKYFDVSQNS 164 (203)
Q Consensus 150 ~~~~~L~~L~l~~n~ 164 (203)
..+++++.+.+.++.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 344445555544444
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.11 E-value=0.004 Score=26.87 Aligned_cols=18 Identities=39% Similarity=0.792 Sum_probs=10.6
Q ss_pred ccEEEccCCccccccCCCC
Q 037699 155 LKYFDVSQNSLTLNVSPDW 173 (203)
Q Consensus 155 L~~L~l~~n~~~~~~~~~l 173 (203)
|+.|++++|.++ .+|+.+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 566666666666 444443
No 69
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.71 E-value=0.0065 Score=24.40 Aligned_cols=12 Identities=33% Similarity=0.587 Sum_probs=5.5
Q ss_pred CccEEEcCCCCC
Q 037699 178 QLKELNLESCNL 189 (203)
Q Consensus 178 ~L~~L~l~~n~l 189 (203)
+|+.|++++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 456666666665
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.00047 Score=50.24 Aligned_cols=83 Identities=20% Similarity=0.143 Sum_probs=50.6
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccc-hhhhhccCCc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKI-ATSFGRLCKL 88 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L 88 (203)
+++.|++.+|.++++. ...+++.|+.|.|+-|. +...- .+..+..|+.|++..|.|.... -..+.++++|
T Consensus 20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNk-----IssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNK-----ISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HhhhhcccCCCccHHH--HHHhcccceeEEeeccc-----cccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 5667777777776431 23457777777777775 43332 2456667777777777776211 1345667777
Q ss_pred cEEEccCCcCCcc
Q 037699 89 RSVFLSHSNMNQE 101 (203)
Q Consensus 89 ~~L~l~~n~~~~~ 101 (203)
+.|.+..|+--+.
T Consensus 91 r~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 91 RTLWLDENPCCGE 103 (388)
T ss_pred hhHhhccCCcccc
Confidence 7777777665443
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.10 E-value=0.018 Score=45.90 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=18.1
Q ss_pred CCCCCCEEEccccc-cCccchhhhhc-cCCccEEEccCCc
Q 037699 60 NLTSIQTLDLSFNN-LEGKIATSFGR-LCKLRSVFLSHSN 97 (203)
Q Consensus 60 ~~~~L~~L~l~~~~-~~~~~~~~~~~-l~~L~~L~l~~n~ 97 (203)
.+++++.++++++. +++..-..+.. +++|+.|.+..+.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 34555666666555 44322222222 4556666554444
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.67 E-value=0.00026 Score=56.20 Aligned_cols=178 Identities=25% Similarity=0.248 Sum_probs=87.0
Q ss_pred ccEEecCCCccCCC----CCccccCCCCccEEeCCCCcccccccccccccccCCC-CCCCEEEccccccCc----cchhh
Q 037699 11 LVFLDLSLNNFQGP----IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL-TSIQTLDLSFNNLEG----KIATS 81 (203)
Q Consensus 11 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~----~~~~~ 81 (203)
+..+.+.+|.+... +..++.....|+.+++++|... ......+...+... ..++++.+..|.++. .++..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~-~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG-DEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc-cHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 55566666666532 3334455666777777776411 11111122222222 345666666666653 23334
Q ss_pred hhccCCccEEEccCCcCCcchhhhh-hhccc--cccCCcccccccc---------------ccCCC-CCEEEccCCcccc
Q 037699 82 FGRLCKLRSVFLSHSNMNQEISKIL-NIFST--CILDGLEVLEMTE---------------WQLSS-LDSVNLSNNTLFG 142 (203)
Q Consensus 82 ~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~--~~~~~l~~l~~~~---------------~~~~~-L~~L~l~~n~l~~ 142 (203)
+.....++.+++..|.+........ ..+.. ....+++.+.+.. ...+. +..++++.|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 4445556666666665532211111 01100 0011111111100 01223 5568888887754
Q ss_pred ccchh---hhccC-CCccEEEccCCcccccc----CCCCCCCCCccEEEcCCCCC
Q 037699 143 SLFEI---HFAKL-SKLKYFDVSQNSLTLNV----SPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 143 ~~~~~---~l~~~-~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~l 189 (203)
..... .+..+ ..++.+++++|.++... ...+..+++++++.++.|.+
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l 302 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL 302 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence 42221 22333 45678888888887532 34455666888888888887
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.63 E-value=0.04 Score=24.64 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=14.0
Q ss_pred CCccEEEcCCCCCCCCCCchhhh
Q 037699 177 FQLKELNLESCNLVGNRFPSWLL 199 (203)
Q Consensus 177 ~~L~~L~l~~n~l~~~~~p~~~~ 199 (203)
++|+.|+|++|.+ ..+|....
T Consensus 2 ~~L~~L~L~~N~l--~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQL--SSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcC--CcCCHHHc
Confidence 4567777777777 56666544
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.63 E-value=0.04 Score=24.64 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=14.0
Q ss_pred CCccEEEcCCCCCCCCCCchhhh
Q 037699 177 FQLKELNLESCNLVGNRFPSWLL 199 (203)
Q Consensus 177 ~~L~~L~l~~n~l~~~~~p~~~~ 199 (203)
++|+.|+|++|.+ ..+|....
T Consensus 2 ~~L~~L~L~~N~l--~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQL--SSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcC--CcCCHHHc
Confidence 4567777777777 56666544
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.59 E-value=0.005 Score=42.80 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=30.3
Q ss_pred cCCCCCEEEccCCccccccchhhhc-cCCCccEEEccCC-ccccccCCCCCCCCCccEEEcCC
Q 037699 126 QLSSLDSVNLSNNTLFGSLFEIHFA-KLSKLKYFDVSQN-SLTLNVSPDWIPPFQLKELNLES 186 (203)
Q Consensus 126 ~~~~L~~L~l~~n~l~~~~~~~~l~-~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~ 186 (203)
.++.++.|.+..+.-.++....-++ -.++|+.|++++| +||......+..+++|+.|.+.+
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 4555666666555444433322222 2356666666655 45543334445555555555543
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.90 E-value=0.02 Score=39.90 Aligned_cols=34 Identities=21% Similarity=0.144 Sum_probs=15.7
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCC
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSAN 43 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 43 (203)
.++.++-+++.+..+--+.+..+..++.+.+.++
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 3444444444444333334444444555555544
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.62 E-value=0.057 Score=23.61 Aligned_cols=13 Identities=46% Similarity=0.690 Sum_probs=5.5
Q ss_pred CCCEEEccccccC
Q 037699 63 SIQTLDLSFNNLE 75 (203)
Q Consensus 63 ~L~~L~l~~~~~~ 75 (203)
+|++|++++|.++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4455555555544
No 78
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=89.97 E-value=0.13 Score=39.96 Aligned_cols=160 Identities=16% Similarity=0.076 Sum_probs=76.3
Q ss_pred cccEEecCCCc-cCCC-CCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEcccccc-Cccchh-hhhcc
Q 037699 10 HLVFLDLSLNN-FQGP-IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNL-EGKIAT-SFGRL 85 (203)
Q Consensus 10 ~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~~-~~~~l 85 (203)
.+.++++.+|. ++++ ....-..+..|+.+..+++...+....+. .-....+|+.+.+..|.. ++.-.. .-.+.
T Consensus 269 ~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a---Lg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~ 345 (483)
T KOG4341|consen 269 EILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA---LGQHCHNLQVLELSGCQQFSDRGFTMLGRNC 345 (483)
T ss_pred HhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH---HhcCCCceEEEeccccchhhhhhhhhhhcCC
Confidence 34455555553 3322 11222346677777777764222221111 123456788888777652 211111 12345
Q ss_pred CCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhh----ccCCCccEEEcc
Q 037699 86 CKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHF----AKLSKLKYFDVS 161 (203)
Q Consensus 86 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l----~~~~~L~~L~l~ 161 (203)
+.|+.+++..+...... .+.. .+.+++.|+.+.++++....+.....+ .....++.+.++
T Consensus 346 ~~Le~l~~e~~~~~~d~--tL~s--------------ls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~ 409 (483)
T KOG4341|consen 346 PHLERLDLEECGLITDG--TLAS--------------LSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELD 409 (483)
T ss_pred hhhhhhcccccceehhh--hHhh--------------hccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeec
Confidence 56666666655432211 0110 011566677777776644322111111 234556667777
Q ss_pred CCcccc-ccCCCCCCCCCccEEEcCCCC
Q 037699 162 QNSLTL-NVSPDWIPPFQLKELNLESCN 188 (203)
Q Consensus 162 ~n~~~~-~~~~~l~~~~~L~~L~l~~n~ 188 (203)
++.... ...+-+..++.|+.+++.++.
T Consensus 410 n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 410 NCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CCCCchHHHHHHHhhCcccceeeeechh
Confidence 765442 223345556666666666654
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=88.70 E-value=0.37 Score=21.67 Aligned_cols=18 Identities=39% Similarity=0.573 Sum_probs=13.5
Q ss_pred CCccEEEcCCCCCCCCCCch
Q 037699 177 FQLKELNLESCNLVGNRFPS 196 (203)
Q Consensus 177 ~~L~~L~l~~n~l~~~~~p~ 196 (203)
++|++|++++|++ .++|+
T Consensus 2 ~~L~~L~vs~N~L--t~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQL--TSLPE 19 (26)
T ss_pred cccceeecCCCcc--ccCcc
Confidence 3678888888888 66776
No 80
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=88.46 E-value=0.26 Score=38.46 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=43.2
Q ss_pred cCCCCCEEEccCCcccccc-chhhhccCCCccEEEccCCcccccc-C----CCCCCCCCccEEEcCCCCCCCCCCchhhh
Q 037699 126 QLSSLDSVNLSNNTLFGSL-FEIHFAKLSKLKYFDVSQNSLTLNV-S----PDWIPPFQLKELNLESCNLVGNRFPSWLL 199 (203)
Q Consensus 126 ~~~~L~~L~l~~n~l~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~-~----~~l~~~~~L~~L~l~~n~l~~~~~p~~~~ 199 (203)
+.+.|+.+++.++....+. ....-.+++.++.+.++.|...... . ..-.....|..+-+++++...+.....+.
T Consensus 344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~ 423 (483)
T KOG4341|consen 344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS 423 (483)
T ss_pred CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence 5567777777666442111 2223457788888888877543211 1 11233446788888888765555444444
Q ss_pred cc
Q 037699 200 SQ 201 (203)
Q Consensus 200 ~~ 201 (203)
.+
T Consensus 424 ~c 425 (483)
T KOG4341|consen 424 IC 425 (483)
T ss_pred hC
Confidence 44
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=87.61 E-value=0.011 Score=47.33 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=29.6
Q ss_pred CCCCEEEccCCccccccch---hhhccCCCccEEEccCCcccc
Q 037699 128 SSLDSVNLSNNTLFGSLFE---IHFAKLSKLKYFDVSQNSLTL 167 (203)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~---~~l~~~~~L~~L~l~~n~~~~ 167 (203)
..++.++++.|.+.+.... ..+..++.++.+.++.|.+..
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 5678999999988754322 245567789999999998864
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=86.33 E-value=0.58 Score=21.34 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=10.2
Q ss_pred CCccEEEcCCCCC
Q 037699 177 FQLKELNLESCNL 189 (203)
Q Consensus 177 ~~L~~L~l~~n~l 189 (203)
++|++|+|++|.|
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 4678888888887
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.62 E-value=0.92 Score=20.38 Aligned_cols=14 Identities=36% Similarity=0.596 Sum_probs=8.1
Q ss_pred CCccEEEccCCccc
Q 037699 153 SKLKYFDVSQNSLT 166 (203)
Q Consensus 153 ~~L~~L~l~~n~~~ 166 (203)
.+|+.|+++.|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34566666666654
No 84
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.66 E-value=0.033 Score=39.94 Aligned_cols=83 Identities=19% Similarity=0.123 Sum_probs=55.1
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
+..+.||++.|.+. .....+..+..+..|+++.| -....|..+.....+..++...|..+ ..|.+++..+.+
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~skn------q~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~ 113 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKN------QIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHP 113 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHh------hHhhChhhHHHHHHHHHHHhhccchh-hCCccccccCCc
Confidence 46667777777655 34444555666667777776 34455666666666677777777666 677778888888
Q ss_pred cEEEccCCcCC
Q 037699 89 RSVFLSHSNMN 99 (203)
Q Consensus 89 ~~L~l~~n~~~ 99 (203)
+.++.-.+.+.
T Consensus 114 k~~e~k~~~~~ 124 (326)
T KOG0473|consen 114 KKNEQKKTEFF 124 (326)
T ss_pred chhhhccCcch
Confidence 87777776654
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.98 E-value=1.9 Score=34.99 Aligned_cols=64 Identities=28% Similarity=0.229 Sum_probs=40.9
Q ss_pred cCCCCCEEEccCCccccccch-hhhccCCCccEEEccCC--ccccc-cCCCCCCCCCccEEEcCCCCCC
Q 037699 126 QLSSLDSVNLSNNTLFGSLFE-IHFAKLSKLKYFDVSQN--SLTLN-VSPDWIPPFQLKELNLESCNLV 190 (203)
Q Consensus 126 ~~~~L~~L~l~~n~l~~~~~~-~~l~~~~~L~~L~l~~n--~~~~~-~~~~l~~~~~L~~L~l~~n~l~ 190 (203)
+.+.+..+++++|++...... ......+++..|+|++| .+... -.+.++.+ .|++|.+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l-~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGL-PLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCC-CHHHeeecCCccc
Confidence 667888999999987422111 13345788999999999 33321 11122222 5889999999883
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=66.25 E-value=4.4 Score=17.82 Aligned_cols=10 Identities=50% Similarity=1.109 Sum_probs=4.8
Q ss_pred CccEEEcCCC
Q 037699 178 QLKELNLESC 187 (203)
Q Consensus 178 ~L~~L~l~~n 187 (203)
+|+.|+|++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 4444445444
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.04 E-value=6.2 Score=32.25 Aligned_cols=80 Identities=21% Similarity=0.073 Sum_probs=42.1
Q ss_pred CCcccEEecCCCccCCC--CCccccCCCCccEEeCCCCcccccccccccccccCC--CCCCCEEEccccccCccc---hh
Q 037699 8 SDHLVFLDLSLNNFQGP--IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGN--LTSIQTLDLSFNNLEGKI---AT 80 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~---~~ 80 (203)
.+.+..+.+++|.+... +..-....++|+.|+|++|. ........+.+ ...|+.|.+.+|++.... ..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~-----~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~ 291 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNH-----SKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSE 291 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccch-----hhhcchhhhhhhcCCCHHHeeecCCccccchhhhHH
Confidence 34566677777766521 22222345777788888873 22222222222 235777777787776321 11
Q ss_pred hh----hccCCccEEE
Q 037699 81 SF----GRLCKLRSVF 92 (203)
Q Consensus 81 ~~----~~l~~L~~L~ 92 (203)
.+ ..+|+|..||
T Consensus 292 yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 292 YVSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHHhcchheeec
Confidence 12 2457776655
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=49.14 E-value=0.82 Score=33.09 Aligned_cols=59 Identities=17% Similarity=0.068 Sum_probs=48.5
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccC
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLE 75 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 75 (203)
.+..|+++.|.+. ..|.-+.+...+.++++.+| .....|.++...+.+++++..++.+.
T Consensus 66 ~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n------~~~~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 66 RLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKN------NHSQQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHhccHhhHh-hChhhHHHHHHHHHHHhhcc------chhhCCccccccCCcchhhhccCcch
Confidence 4566888888877 67878888888888888887 67788999999999999999888765
No 89
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=39.63 E-value=9.6 Score=16.95 Aligned_cols=11 Identities=45% Similarity=0.637 Sum_probs=5.0
Q ss_pred ccEEEcCCCCC
Q 037699 179 LKELNLESCNL 189 (203)
Q Consensus 179 L~~L~l~~n~l 189 (203)
|++|+|.+..+
T Consensus 2 LKtL~L~~v~f 12 (26)
T PF07723_consen 2 LKTLHLDSVVF 12 (26)
T ss_pred CeEEEeeEEEE
Confidence 44444444444
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=29.62 E-value=42 Score=33.49 Aligned_cols=30 Identities=33% Similarity=0.375 Sum_probs=13.0
Q ss_pred ccCCccccccchhhhccCCCccEEEccCCcc
Q 037699 135 LSNNTLFGSLFEIHFAKLSKLKYFDVSQNSL 165 (203)
Q Consensus 135 l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~ 165 (203)
|++|.|. .++...|..+++|+.|+|++|.+
T Consensus 2 LSnN~Ls-tLp~g~F~~L~sL~~LdLsgNPw 31 (2740)
T TIGR00864 2 ISNNKIS-TIEEGICANLCNLSEIDLSGNPF 31 (2740)
T ss_pred CCCCcCC-ccChHHhccCCCceEEEeeCCcc
Confidence 3444442 33333444444444444444443
Done!