Query 037699
Match_columns 203
No_of_seqs 135 out of 2083
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 05:21:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037699.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037699hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 4.5E-24 1.5E-28 159.9 14.9 193 1-203 96-302 (328)
2 1ogq_A PGIP-2, polygalacturona 99.9 3.2E-24 1.1E-28 159.8 12.5 191 2-201 69-267 (313)
3 3rgz_A Protein brassinosteroid 99.9 2.1E-23 7.2E-28 172.1 17.0 74 127-202 631-704 (768)
4 4fcg_A Uncharacterized protein 99.9 2.8E-23 9.5E-28 155.6 14.3 184 9-203 81-278 (328)
5 3m19_A Variable lymphocyte rec 99.9 2.2E-22 7.5E-27 145.4 17.8 160 9-192 35-194 (251)
6 1ogq_A PGIP-2, polygalacturona 99.9 1.6E-23 5.5E-28 156.0 11.5 170 9-190 50-234 (313)
7 3rgz_A Protein brassinosteroid 99.9 1.4E-22 4.7E-27 167.2 18.1 195 2-202 411-680 (768)
8 1ozn_A Reticulon 4 receptor; N 99.9 2.2E-22 7.6E-27 147.9 17.0 176 8-189 31-213 (285)
9 2o6q_A Variable lymphocyte rec 99.9 1.8E-21 6.3E-26 142.0 18.7 179 9-193 37-221 (270)
10 2o6q_A Variable lymphocyte rec 99.9 1.5E-21 5.3E-26 142.4 18.0 159 4-168 56-220 (270)
11 1ozn_A Reticulon 4 receptor; N 99.9 9.6E-22 3.3E-26 144.5 16.0 181 12-202 14-201 (285)
12 3rfs_A Internalin B, repeat mo 99.9 4.2E-21 1.4E-25 140.3 17.6 160 7-192 61-220 (272)
13 2z66_A Variable lymphocyte rec 99.9 6.9E-22 2.3E-26 146.7 13.4 179 8-193 77-264 (306)
14 3zyi_A Leucine-rich repeat-con 99.9 4.1E-21 1.4E-25 149.8 18.0 175 9-189 75-278 (452)
15 1p9a_G Platelet glycoprotein I 99.9 2.7E-21 9.1E-26 142.5 15.7 171 9-189 31-207 (290)
16 1xku_A Decorin; proteoglycan, 99.9 1.2E-20 4E-25 141.5 19.2 181 5-201 72-262 (330)
17 3o6n_A APL1; leucine-rich repe 99.9 7.9E-21 2.7E-25 145.5 18.2 190 4-202 88-318 (390)
18 3zyj_A Leucine-rich repeat-con 99.9 5.2E-21 1.8E-25 148.7 17.3 174 10-189 65-267 (440)
19 3v47_A TOLL-like receptor 5B a 99.9 3.8E-21 1.3E-25 149.9 16.1 94 4-102 74-170 (455)
20 3oja_B Anopheles plasmodium-re 99.9 1.3E-20 4.4E-25 151.6 18.7 190 4-202 94-324 (597)
21 4eco_A Uncharacterized protein 99.9 5.2E-22 1.8E-26 160.7 10.4 189 1-199 198-423 (636)
22 1wwl_A Monocyte differentiatio 99.9 2.7E-21 9.2E-26 143.9 12.9 170 8-189 94-286 (312)
23 2v9t_B SLIT homolog 2 protein 99.9 1.1E-20 3.6E-25 133.9 14.9 162 11-199 13-174 (220)
24 3m19_A Variable lymphocyte rec 99.9 3.1E-20 1.1E-24 134.1 17.5 166 9-202 14-179 (251)
25 2ft3_A Biglycan; proteoglycan, 99.9 9E-21 3.1E-25 142.2 14.4 175 5-189 74-276 (332)
26 2id5_A Lingo-1, leucine rich r 99.9 2.3E-20 7.7E-25 146.4 17.2 62 127-189 247-308 (477)
27 2z66_A Variable lymphocyte rec 99.9 1.9E-21 6.4E-26 144.3 10.1 190 4-201 47-246 (306)
28 3zyi_A Leucine-rich repeat-con 99.9 2.2E-20 7.5E-25 145.6 16.0 90 10-107 55-144 (452)
29 1p9a_G Platelet glycoprotein I 99.9 2.7E-20 9.2E-25 137.1 15.5 155 3-167 49-209 (290)
30 3vq2_A TLR4, TOLL-like recepto 99.9 3.3E-21 1.1E-25 155.2 11.5 69 126-196 495-564 (606)
31 2o6s_A Variable lymphocyte rec 99.9 8E-21 2.7E-25 133.4 12.1 163 8-202 27-189 (208)
32 2z62_A TOLL-like receptor 4, v 99.9 3E-20 1E-24 136.0 15.3 179 9-193 28-240 (276)
33 3vq2_A TLR4, TOLL-like recepto 99.9 1.4E-20 4.8E-25 151.5 14.6 174 2-202 369-544 (606)
34 3rfs_A Internalin B, repeat mo 99.8 8.9E-20 3.1E-24 133.2 17.4 167 7-202 39-205 (272)
35 4eco_A Uncharacterized protein 99.8 1.7E-21 5.9E-26 157.7 8.9 167 25-201 198-399 (636)
36 3o6n_A APL1; leucine-rich repe 99.8 2E-20 6.8E-25 143.2 14.3 188 4-201 64-294 (390)
37 2v70_A SLIT-2, SLIT homolog 2 99.8 3.8E-20 1.3E-24 131.1 14.6 163 10-199 12-175 (220)
38 4ecn_A Leucine-rich repeat pro 99.8 5.7E-21 1.9E-25 158.3 11.8 182 1-191 440-658 (876)
39 3v47_A TOLL-like receptor 5B a 99.8 6.6E-20 2.3E-24 142.9 17.2 65 126-191 345-409 (455)
40 2id5_A Lingo-1, leucine rich r 99.8 3E-20 1E-24 145.7 15.1 167 9-186 32-209 (477)
41 1wwl_A Monocyte differentiatio 99.8 6.4E-21 2.2E-25 141.9 10.4 181 11-199 65-273 (312)
42 2z62_A TOLL-like receptor 4, v 99.8 7.4E-20 2.5E-24 133.8 15.7 159 5-169 72-240 (276)
43 3zyj_A Leucine-rich repeat-con 99.8 5.6E-20 1.9E-24 142.9 15.9 169 10-189 44-243 (440)
44 3oja_B Anopheles plasmodium-re 99.8 2.9E-20 9.8E-25 149.6 14.2 188 4-201 70-300 (597)
45 3t6q_A CD180 antigen; protein- 99.8 3.8E-20 1.3E-24 149.0 14.8 92 4-101 273-365 (606)
46 2z80_A TOLL-like receptor 2, v 99.8 2.4E-20 8.1E-25 141.0 12.0 158 9-189 52-210 (353)
47 3t6q_A CD180 antigen; protein- 99.8 7.1E-20 2.4E-24 147.4 15.1 189 4-200 345-545 (606)
48 4ecn_A Leucine-rich repeat pro 99.8 2.1E-20 7.2E-25 155.0 12.1 165 25-200 440-640 (876)
49 3e6j_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 126.7 16.7 156 10-193 20-175 (229)
50 1xku_A Decorin; proteoglycan, 99.8 3.9E-19 1.3E-23 133.2 17.2 178 2-189 93-275 (330)
51 2z81_A CD282 antigen, TOLL-lik 99.8 3.6E-20 1.2E-24 147.5 12.0 157 9-188 26-183 (549)
52 2xwt_C Thyrotropin receptor; s 99.8 4.8E-20 1.7E-24 132.1 10.9 179 9-197 31-223 (239)
53 1ziw_A TOLL-like receptor 3; i 99.8 2.3E-19 7.7E-24 146.3 15.9 93 6-103 70-162 (680)
54 4ezg_A Putative uncharacterize 99.8 1.8E-19 6.3E-24 125.5 13.2 151 7-189 42-193 (197)
55 2z80_A TOLL-like receptor 2, v 99.8 2E-20 6.9E-25 141.4 8.2 182 4-192 71-316 (353)
56 3oja_A Leucine-rich immune mol 99.8 1.5E-19 5E-24 142.1 11.8 181 8-201 33-236 (487)
57 3j0a_A TOLL-like receptor 5; m 99.8 7.7E-20 2.6E-24 152.3 10.6 181 7-199 22-225 (844)
58 3o53_A Protein LRIM1, AGAP0063 99.8 7.6E-20 2.6E-24 136.4 9.5 183 6-201 31-236 (317)
59 3o53_A Protein LRIM1, AGAP0063 99.8 7.5E-20 2.6E-24 136.4 9.4 187 3-202 52-262 (317)
60 3j0a_A TOLL-like receptor 5; m 99.8 9.2E-19 3.1E-23 145.9 16.9 97 2-103 66-165 (844)
61 2o6s_A Variable lymphocyte rec 99.8 2.6E-18 8.8E-23 120.6 16.7 154 11-191 9-162 (208)
62 3oja_A Leucine-rich immune mol 99.8 1.5E-19 5.1E-24 142.1 11.4 185 2-201 51-261 (487)
63 2xot_A Amphoterin-induced prot 99.8 1.2E-19 4E-24 137.7 10.3 159 10-192 40-204 (361)
64 2ft3_A Biglycan; proteoglycan, 99.8 7E-19 2.4E-23 131.9 14.3 186 2-202 95-320 (332)
65 4glp_A Monocyte differentiatio 99.8 1.2E-19 4E-24 135.0 9.6 179 9-197 91-292 (310)
66 4glp_A Monocyte differentiatio 99.8 2.3E-19 8E-24 133.3 11.2 175 6-191 114-308 (310)
67 4g8a_A TOLL-like receptor 4; l 99.8 2.7E-19 9.2E-24 144.4 12.4 159 8-189 51-213 (635)
68 2z63_A TOLL-like receptor 4, v 99.8 2E-19 6.8E-24 143.7 11.1 180 7-193 345-534 (570)
69 2z7x_B TOLL-like receptor 1, v 99.8 9.2E-19 3.1E-23 138.6 14.8 174 10-198 303-489 (520)
70 1h6u_A Internalin H; cell adhe 99.8 3.8E-18 1.3E-22 126.7 16.8 159 8-189 62-229 (308)
71 1ziw_A TOLL-like receptor 3; i 99.8 3.1E-18 1.1E-22 139.6 16.9 182 2-189 398-596 (680)
72 2z63_A TOLL-like receptor 4, v 99.8 6.4E-19 2.2E-23 140.8 12.3 158 8-189 27-189 (570)
73 2xwt_C Thyrotropin receptor; s 99.8 6.7E-19 2.3E-23 126.2 10.4 153 21-189 23-192 (239)
74 2z7x_B TOLL-like receptor 1, v 99.8 1.9E-18 6.6E-23 136.8 14.0 181 9-202 247-468 (520)
75 2v9t_B SLIT homolog 2 protein 99.8 3.9E-18 1.3E-22 120.7 13.5 135 9-167 32-166 (220)
76 1h6t_A Internalin B; cell adhe 99.8 1.4E-17 4.7E-22 122.7 16.4 159 8-189 45-212 (291)
77 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 3.7E-18 1.3E-22 136.4 14.2 152 30-194 350-514 (562)
78 2ast_B S-phase kinase-associat 99.8 4.5E-19 1.5E-23 133.0 8.5 168 9-187 93-282 (336)
79 2xot_A Amphoterin-induced prot 99.8 7.5E-18 2.6E-22 127.7 14.8 156 11-195 20-179 (361)
80 1h6u_A Internalin H; cell adhe 99.8 2.7E-17 9.1E-22 122.1 16.8 169 8-202 40-217 (308)
81 2v70_A SLIT-2, SLIT homolog 2 99.8 1.2E-17 4E-22 118.3 13.7 135 9-167 32-167 (220)
82 4g8a_A TOLL-like receptor 4; l 99.8 1.2E-17 4.1E-22 134.7 15.5 171 5-199 416-589 (635)
83 3e6j_A Variable lymphocyte rec 99.8 2E-17 6.7E-22 117.8 14.7 136 8-168 39-174 (229)
84 2ast_B S-phase kinase-associat 99.8 5.2E-19 1.8E-23 132.7 6.4 187 3-199 112-314 (336)
85 3goz_A Leucine-rich repeat-con 99.8 3.7E-19 1.3E-23 135.0 5.6 184 2-190 15-238 (362)
86 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.3E-17 4.6E-22 133.2 14.7 157 6-168 350-512 (562)
87 4fmz_A Internalin; leucine ric 99.8 2.7E-17 9.2E-22 123.9 15.5 120 58-189 195-323 (347)
88 1h6t_A Internalin B; cell adhe 99.8 2.7E-17 9.1E-22 121.2 14.4 143 5-168 64-215 (291)
89 2z81_A CD282 antigen, TOLL-lik 99.8 1.1E-17 3.8E-22 133.2 13.1 164 11-201 7-171 (549)
90 4fmz_A Internalin; leucine ric 99.7 4.5E-17 1.5E-21 122.7 14.3 171 5-189 173-345 (347)
91 2ell_A Acidic leucine-rich nuc 99.7 8.3E-18 2.8E-22 114.1 9.3 84 9-99 24-108 (168)
92 1xeu_A Internalin C; cellular 99.7 5.7E-17 2E-21 117.7 14.2 149 6-191 38-186 (263)
93 1m9s_A Internalin B; cell inva 99.7 5.3E-17 1.8E-21 130.4 15.2 61 126-191 151-211 (605)
94 2ell_A Acidic leucine-rich nuc 99.7 6.2E-17 2.1E-21 109.8 13.1 141 31-198 22-166 (168)
95 3bz5_A Internalin-J, INLJ; leu 99.7 3.3E-16 1.1E-20 122.2 17.5 79 8-100 63-141 (457)
96 1w8a_A SLIT protein; signaling 99.7 9.2E-17 3.1E-21 111.3 12.6 130 11-167 10-140 (192)
97 1o6v_A Internalin A; bacterial 99.7 1.5E-16 5E-21 124.5 15.2 164 5-191 217-389 (466)
98 1m9s_A Internalin B; cell inva 99.7 1.3E-16 4.4E-21 128.2 15.1 157 7-202 41-197 (605)
99 2je0_A Acidic leucine-rich nuc 99.7 1.5E-16 5.1E-21 105.8 12.9 129 8-161 16-148 (149)
100 1o6v_A Internalin A; bacterial 99.7 3.3E-16 1.1E-20 122.5 16.7 163 5-190 195-366 (466)
101 2ca6_A RAN GTPase-activating p 99.7 3.7E-18 1.3E-22 130.5 5.4 185 4-190 27-257 (386)
102 4ezg_A Putative uncharacterize 99.7 2E-16 6.9E-21 110.0 13.3 133 5-167 62-195 (197)
103 1w8a_A SLIT protein; signaling 99.7 2.3E-16 7.8E-21 109.3 11.9 111 63-192 30-141 (192)
104 2wfh_A SLIT homolog 2 protein 99.7 3.7E-16 1.3E-20 108.3 13.0 80 12-100 13-92 (193)
105 2ca6_A RAN GTPase-activating p 99.7 4E-18 1.4E-22 130.3 3.3 187 4-198 55-298 (386)
106 3bz5_A Internalin-J, INLJ; leu 99.7 5.9E-16 2E-20 120.7 15.0 166 5-190 38-225 (457)
107 2je0_A Acidic leucine-rich nuc 99.7 8.4E-17 2.9E-21 107.0 8.8 130 32-186 16-149 (149)
108 3cvr_A Invasion plasmid antige 99.7 2.4E-16 8.1E-21 125.5 12.4 75 10-100 60-134 (571)
109 3cvr_A Invasion plasmid antige 99.7 1.6E-15 5.5E-20 120.8 16.2 167 9-201 80-253 (571)
110 4ay9_X Follicle-stimulating ho 99.7 4.2E-16 1.4E-20 117.7 11.4 181 8-197 29-220 (350)
111 2wfh_A SLIT homolog 2 protein 99.7 2.3E-15 8E-20 104.3 12.9 136 36-199 13-148 (193)
112 1z7x_W Ribonuclease inhibitor; 99.6 2.3E-17 8E-22 128.6 1.7 180 10-190 200-411 (461)
113 2o6r_A Variable lymphocyte rec 99.6 7.1E-15 2.4E-19 100.4 13.8 130 10-166 8-137 (177)
114 2o6r_A Variable lymphocyte rec 99.6 7.5E-15 2.6E-19 100.3 13.6 130 35-191 9-138 (177)
115 1xeu_A Internalin C; cellular 99.6 7E-16 2.4E-20 112.0 8.7 152 10-201 20-171 (263)
116 3goz_A Leucine-rich repeat-con 99.6 3.4E-16 1.2E-20 118.6 6.0 172 13-189 2-208 (362)
117 1jl5_A Outer protein YOPM; leu 99.6 3.2E-16 1.1E-20 122.2 5.7 162 10-189 12-207 (454)
118 3g06_A SSPH2 (leucine-rich rep 99.6 3.4E-14 1.2E-18 114.4 17.2 64 128-202 221-284 (622)
119 1a9n_A U2A', U2A'; complex (nu 99.6 8.3E-15 2.8E-19 100.0 11.6 133 6-166 16-153 (176)
120 4b8c_D Glucose-repressible alc 99.6 1.3E-15 4.6E-20 124.8 8.6 163 10-198 174-336 (727)
121 1ds9_A Outer arm dynein; leuci 99.6 1E-17 3.5E-22 116.7 -3.6 152 9-190 18-185 (198)
122 1jl5_A Outer protein YOPM; leu 99.6 4.9E-14 1.7E-18 109.8 16.7 77 9-100 91-167 (454)
123 4b8c_D Glucose-repressible alc 99.6 4.1E-16 1.4E-20 127.9 4.7 87 5-99 220-306 (727)
124 1a9n_A U2A', U2A'; complex (nu 99.6 4.2E-15 1.4E-19 101.5 8.5 133 28-189 14-152 (176)
125 3g06_A SSPH2 (leucine-rich rep 99.6 1.8E-14 6.2E-19 116.0 11.8 67 126-199 239-305 (622)
126 1z7x_W Ribonuclease inhibitor; 99.6 1.2E-15 4.2E-20 118.9 4.1 89 7-100 54-156 (461)
127 4ay9_X Follicle-stimulating ho 99.6 1.9E-14 6.6E-19 108.5 10.2 183 3-195 48-240 (350)
128 1dce_A Protein (RAB geranylger 99.5 2.3E-13 8E-18 108.6 12.3 122 34-184 442-567 (567)
129 2r9u_A Variable lymphocyte rec 99.5 2.5E-13 8.4E-18 92.5 10.4 104 36-166 15-118 (174)
130 3g39_A Variable lymphocyte rec 99.5 3.4E-13 1.2E-17 91.5 10.7 58 35-100 11-68 (170)
131 3un9_A NLR family member X1; l 99.5 1.1E-15 3.8E-20 116.1 -2.5 162 9-189 72-251 (372)
132 3g39_A Variable lymphocyte rec 99.5 7.4E-13 2.5E-17 89.8 11.1 108 10-143 10-117 (170)
133 1dce_A Protein (RAB geranylger 99.4 1.1E-12 3.8E-17 104.8 12.5 137 24-190 400-546 (567)
134 2r9u_A Variable lymphocyte rec 99.4 1.4E-12 4.9E-17 88.7 11.1 105 11-141 14-118 (174)
135 1ds9_A Outer arm dynein; leuci 99.4 4E-15 1.4E-19 103.5 -1.9 133 4-166 43-185 (198)
136 3ogk_B Coronatine-insensitive 99.4 9.7E-15 3.3E-19 117.2 -1.2 70 126-195 461-531 (592)
137 3ogk_B Coronatine-insensitive 99.4 3.2E-14 1.1E-18 114.2 0.2 62 126-187 486-548 (592)
138 3sb4_A Hypothetical leucine ri 99.3 1.3E-11 4.5E-16 92.2 12.2 155 8-189 100-309 (329)
139 2ifg_A High affinity nerve gro 99.3 9.2E-12 3.1E-16 93.7 10.1 92 54-166 24-116 (347)
140 2ifg_A High affinity nerve gro 99.3 1.2E-11 4E-16 93.1 9.7 104 12-141 11-116 (347)
141 2p1m_B Transport inhibitor res 99.3 1.1E-13 3.7E-18 111.1 -3.7 63 127-189 455-518 (594)
142 3sb4_A Hypothetical leucine ri 99.2 1.5E-10 5.1E-15 86.5 12.0 161 3-184 118-328 (329)
143 3un9_A NLR family member X1; l 99.2 3.3E-12 1.1E-16 97.0 2.8 161 9-189 101-282 (372)
144 2p1m_B Transport inhibitor res 99.2 7.1E-13 2.4E-17 106.4 -1.1 37 151-187 287-324 (594)
145 2ra8_A Uncharacterized protein 99.1 2.8E-10 9.4E-15 86.0 7.0 163 7-189 137-319 (362)
146 4fdw_A Leucine rich hypothetic 99.0 7.4E-09 2.5E-13 79.4 14.5 60 126-189 298-357 (401)
147 1io0_A Tropomodulin; LRR prote 98.9 2E-09 6.9E-14 73.8 6.4 121 55-189 29-163 (185)
148 1io0_A Tropomodulin; LRR prote 98.9 8.5E-10 2.9E-14 75.7 3.7 126 27-167 30-165 (185)
149 4fdw_A Leucine rich hypothetic 98.9 6.5E-08 2.2E-12 74.2 13.7 61 126-187 269-333 (401)
150 2ra8_A Uncharacterized protein 98.8 2.7E-09 9.3E-14 80.6 3.1 158 6-188 169-341 (362)
151 3e4g_A ATP synthase subunit S, 98.7 9.2E-09 3.1E-13 69.4 3.5 85 10-98 62-151 (176)
152 3e4g_A ATP synthase subunit S, 98.6 8E-08 2.7E-12 64.8 5.9 88 62-164 61-150 (176)
153 3rw6_A Nuclear RNA export fact 98.4 3.3E-07 1.1E-11 66.1 4.7 16 85-100 169-184 (267)
154 3rw6_A Nuclear RNA export fact 98.3 7E-07 2.4E-11 64.4 5.5 62 31-99 168-233 (267)
155 1pgv_A TMD-1, tropomodulin TMD 98.1 1.2E-05 4.2E-10 55.1 6.8 48 55-102 63-114 (197)
156 4fs7_A Uncharacterized protein 97.9 0.00021 7.1E-09 54.5 12.3 59 126-187 318-376 (394)
157 4h09_A Hypothetical leucine ri 97.9 0.0004 1.4E-08 52.5 13.1 59 126-186 284-342 (379)
158 4gt6_A Cell surface protein; l 97.8 0.00035 1.2E-08 53.3 11.9 132 27-189 259-390 (394)
159 1pgv_A TMD-1, tropomodulin TMD 97.8 1.5E-05 5.1E-10 54.7 3.6 122 54-189 33-169 (197)
160 4h09_A Hypothetical leucine ri 97.8 0.00047 1.6E-08 52.2 12.1 139 9-176 217-355 (379)
161 4gt6_A Cell surface protein; l 97.7 0.00032 1.1E-08 53.5 10.6 131 4-165 260-390 (394)
162 4fs7_A Uncharacterized protein 97.6 0.00045 1.5E-08 52.6 9.7 59 27-92 65-123 (394)
163 3rfe_A Platelet glycoprotein I 97.2 0.00072 2.5E-08 43.2 5.5 40 154-193 32-71 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.007 2.4E-07 38.5 6.2 36 63-98 32-67 (130)
165 2lz0_A Uncharacterized protein 77.8 4.6 0.00016 24.0 4.5 46 20-71 7-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=4.5e-24 Score=159.92 Aligned_cols=193 Identities=18% Similarity=0.243 Sum_probs=149.3
Q ss_pred CCcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh
Q 037699 1 MPWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT 80 (203)
Q Consensus 1 ~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 80 (203)
+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|. +. .+|..+..+++|++|++++|.+.+.+|.
T Consensus 96 lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-----l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~ 168 (328)
T 4fcg_A 96 FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-----LR-ALPASIASLNRLRELSIRACPELTELPE 168 (328)
T ss_dssp CCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-----CC-CCCGGGGGCTTCCEEEEEEETTCCCCCS
T ss_pred cChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-----cc-cCcHHHhcCcCCCEEECCCCCCccccCh
Confidence 4555556779999999999988 788888999999999999985 55 6688888899999999999887777777
Q ss_pred hhhc---------cCCccEEEccCCcCCcchhhhhhhcc---ccccCCcccccccc--ccCCCCCEEEccCCccccccch
Q 037699 81 SFGR---------LCKLRSVFLSHSNMNQEISKILNIFS---TCILDGLEVLEMTE--WQLSSLDSVNLSNNTLFGSLFE 146 (203)
Q Consensus 81 ~~~~---------l~~L~~L~l~~n~~~~~~~~~~~~~~---~~~~~~l~~l~~~~--~~~~~L~~L~l~~n~l~~~~~~ 146 (203)
.+.. +++|++|++++|.+.. .|..+..+. ...+.+.....++. ..+++|+.|++++|.+.+..+.
T Consensus 169 ~~~~~~~~~~~~~l~~L~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~ 247 (328)
T 4fcg_A 169 PLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPP 247 (328)
T ss_dssp CSEEEC-CCCEEESTTCCEEEEEEECCCC-CCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCC
T ss_pred hHhhccchhhhccCCCCCEEECcCCCcCc-chHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHH
Confidence 6654 8889999998888873 333332211 11111111111221 2678999999999998877766
Q ss_pred hhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcccC
Q 037699 147 IHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQKS 203 (203)
Q Consensus 147 ~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~~ 203 (203)
.+..+++|+.|++++|.+.+.+|..+..+++|++|+|++|.+ ...+|.++.++++
T Consensus 248 -~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 248 -IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN-LSRLPSLIAQLPA 302 (328)
T ss_dssp -CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT-CCCCCGGGGGSCT
T ss_pred -HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc-hhhccHHHhhccC
Confidence 688999999999999999988998899999999999999988 5789999988764
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=3.2e-24 Score=159.79 Aligned_cols=191 Identities=25% Similarity=0.365 Sum_probs=106.6
Q ss_pred CcccccCCcccEEecCC-CccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh
Q 037699 2 PWVFGLSDHLVFLDLSL-NNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT 80 (203)
Q Consensus 2 p~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 80 (203)
|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|. +.+..|..+..+++|++|++++|.+++..|.
T Consensus 69 ~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-----l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 143 (313)
T 1ogq_A 69 PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-----VSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143 (313)
T ss_dssp CGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-----CEEECCGGGGGCTTCCEEECCSSEEESCCCG
T ss_pred ChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-----eCCcCCHHHhCCCCCCEEeCCCCccCCcCCh
Confidence 55566667788888874 77777777777777778888777775 6666677777777777777777777767777
Q ss_pred hhhccCCccEEEccCCcCCcchhhhhhhcc----ccccCCcccc-cccc-c-cCCCCCEEEccCCccccccchhhhccCC
Q 037699 81 SFGRLCKLRSVFLSHSNMNQEISKILNIFS----TCILDGLEVL-EMTE-W-QLSSLDSVNLSNNTLFGSLFEIHFAKLS 153 (203)
Q Consensus 81 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~----~~~~~~l~~l-~~~~-~-~~~~L~~L~l~~n~l~~~~~~~~l~~~~ 153 (203)
.+..+++|++|++++|.+.+..+..+..+. ...+.+.... ..+. . .+. |+.|++++|.+.+..+. .+..++
T Consensus 144 ~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~-~~~~l~ 221 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASV-LFGSDK 221 (313)
T ss_dssp GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGG-GCCTTS
T ss_pred HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCH-HHhcCC
Confidence 777777777777777777654444333211 1111111110 0000 0 222 55555555555433222 344445
Q ss_pred CccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699 154 KLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201 (203)
Q Consensus 154 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~ 201 (203)
+|+.|++++|.+++.++. +..+++|++|++++|.+ ...+|.++..+
T Consensus 222 ~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l-~~~~p~~l~~l 267 (313)
T 1ogq_A 222 NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI-YGTLPQGLTQL 267 (313)
T ss_dssp CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCC-EECCCGGGGGC
T ss_pred CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcc-cCcCChHHhcC
Confidence 555555555554433222 33444455555555544 22344444433
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=2.1e-23 Score=172.10 Aligned_cols=74 Identities=19% Similarity=0.222 Sum_probs=55.6
Q ss_pred CCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699 127 LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK 202 (203)
Q Consensus 127 ~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~ 202 (203)
+++|+.|++++|.+++.+|. .++.++.|+.|++++|.+++.+|..+..+++|+.|+|++|++ ...+|..+..++
T Consensus 631 l~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l-~g~ip~~l~~l~ 704 (768)
T 3rgz_A 631 NGSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL-DGRIPQAMSALT 704 (768)
T ss_dssp SBCCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-EECCCGGGGGCC
T ss_pred cccccEEECcCCcccccCCH-HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc-cCcCChHHhCCC
Confidence 45677888888887766666 677788888888888888877777777777888888888887 445777776654
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.8e-23 Score=155.63 Aligned_cols=184 Identities=22% Similarity=0.232 Sum_probs=150.0
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
.+++.|++++|.++ .+|..+..+++|++|++++|. +. .+|..+..+++|++|++++|.++ .+|..+..+++|
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~-----l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L 152 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG-----LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL 152 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSC-----CC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTC
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCC-----cc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCC
Confidence 58999999999999 788889999999999999996 55 77888999999999999999999 889999999999
Q ss_pred cEEEccCCcCCcchhhhhhhcc----ccccCCccccc--------ccc--ccCCCCCEEEccCCccccccchhhhccCCC
Q 037699 89 RSVFLSHSNMNQEISKILNIFS----TCILDGLEVLE--------MTE--WQLSSLDSVNLSNNTLFGSLFEIHFAKLSK 154 (203)
Q Consensus 89 ~~L~l~~n~~~~~~~~~~~~~~----~~~~~~l~~l~--------~~~--~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~ 154 (203)
++|++++|...+..+..+.... ...+..++.+. ++. ..+++|+.|++++|.+. .++. .+..+++
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~-~l~~l~~ 230 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGP-AIHHLPK 230 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCG-GGGGCTT
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCch-hhccCCC
Confidence 9999999877666554332100 00022333332 222 26789999999999996 4555 5889999
Q ss_pred ccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcccC
Q 037699 155 LKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQKS 203 (203)
Q Consensus 155 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~~ 203 (203)
|+.|++++|.+.+.++..+..+++|++|++++|.+ ...+|.++..+++
T Consensus 231 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN-LLTLPLDIHRLTQ 278 (328)
T ss_dssp CCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT-CCBCCTTGGGCTT
T ss_pred CCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc-hhhcchhhhcCCC
Confidence 99999999999988999999999999999999988 5678888887753
No 5
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=2.2e-22 Score=145.39 Aligned_cols=160 Identities=23% Similarity=0.264 Sum_probs=135.8
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
++++.|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|++++|.++...+..+..+++|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 109 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-----LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-----CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-----CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCC
Confidence 478899999999987777788899999999999987 777777778889999999999999986666778888999
Q ss_pred cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccc
Q 037699 89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN 168 (203)
Q Consensus 89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 168 (203)
++|++++|.+....+..+. .+++|+.|++++|.+. .++...+..+++|+.|++++|.+++.
T Consensus 110 ~~L~L~~N~l~~~~~~~~~------------------~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 110 DKLYLGGNQLKSLPSGVFD------------------RLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp CEEECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CEEEcCCCcCCCcChhHhc------------------cCCcccEEECcCCcCC-ccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 9999999988765554443 6789999999999996 45554788999999999999999977
Q ss_pred cCCCCCCCCCccEEEcCCCCCCCC
Q 037699 169 VSPDWIPPFQLKELNLESCNLVGN 192 (203)
Q Consensus 169 ~~~~l~~~~~L~~L~l~~n~l~~~ 192 (203)
.+..+..+++|+.|++++|.+.++
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCC
Confidence 777888999999999999999655
No 6
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=1.6e-23 Score=155.98 Aligned_cols=170 Identities=25% Similarity=0.360 Sum_probs=140.7
Q ss_pred CcccEEecCCCccCC--CCCccccCCCCccEEeCCC-CcccccccccccccccCCCCCCCEEEccccccCccchhhhhcc
Q 037699 9 DHLVFLDLSLNNFQG--PIPRGLGNLTSLRYLDLSA-NISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRL 85 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 85 (203)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |. +.+..|..+..+++|++|++++|.+++..|..+..+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-----l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 124 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-----LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI 124 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-----EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-----ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCC
Confidence 489999999999998 8999999999999999994 75 777889999999999999999999998899999999
Q ss_pred CCccEEEccCCcCCcchhhhhhhccccccCCcccccc---------cc--ccCC-CCCEEEccCCccccccchhhhccCC
Q 037699 86 CKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM---------TE--WQLS-SLDSVNLSNNTLFGSLFEIHFAKLS 153 (203)
Q Consensus 86 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~--~~~~-~L~~L~l~~n~l~~~~~~~~l~~~~ 153 (203)
++|++|++++|.+.+..+..+.. +.+++.+.+ +. ..++ .|+.|++++|.+.+..+. .+..++
T Consensus 125 ~~L~~L~Ls~N~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~ 198 (313)
T 1ogq_A 125 KTLVTLDFSYNALSGTLPPSISS-----LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-TFANLN 198 (313)
T ss_dssp TTCCEEECCSSEEESCCCGGGGG-----CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG-GGGGCC
T ss_pred CCCCEEeCCCCccCCcCChHHhc-----CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh-HHhCCc
Confidence 99999999999998666655543 223333322 21 1455 889999999988766665 566776
Q ss_pred CccEEEccCCccccccCCCCCCCCCccEEEcCCCCCC
Q 037699 154 KLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLV 190 (203)
Q Consensus 154 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 190 (203)
|+.|++++|.+++..+..+..+++|++|++++|.++
T Consensus 199 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp -CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred -ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 999999999998877778888999999999999983
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=1.4e-22 Score=167.24 Aligned_cols=195 Identities=26% Similarity=0.342 Sum_probs=141.8
Q ss_pred CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhh
Q 037699 2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATS 81 (203)
Q Consensus 2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 81 (203)
|..+..+++|+.|++++|.+++..|..+..+++|++|++++|. +.+..|..+..+++|++|++++|.+++..|..
T Consensus 411 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-----l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 485 (768)
T 3rgz_A 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-----LEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-----CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred CHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc-----ccCcCCHHHcCCCCceEEEecCCcccCcCCHH
Confidence 4556666677777777777777777777777777778877776 66677777777788888888888887777777
Q ss_pred hhccCCccEEEccCCcCCcchhhhhhhccc---cccCCcccc-cccc--ccCCCCCEEEccCCccccccchhh-------
Q 037699 82 FGRLCKLRSVFLSHSNMNQEISKILNIFST---CILDGLEVL-EMTE--WQLSSLDSVNLSNNTLFGSLFEIH------- 148 (203)
Q Consensus 82 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~---~~~~~l~~l-~~~~--~~~~~L~~L~l~~n~l~~~~~~~~------- 148 (203)
+..+++|++|++++|.+.+..|..+..+.. ..+.+.... .++. ..+++|+.|++++|.+.+.+|...
T Consensus 486 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~ 565 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 565 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence 888888888888888877666655443211 111111111 1221 267889999999998876655422
Q ss_pred --------------------------------------------------------------hccCCCccEEEccCCccc
Q 037699 149 --------------------------------------------------------------FAKLSKLKYFDVSQNSLT 166 (203)
Q Consensus 149 --------------------------------------------------------------l~~~~~L~~L~l~~n~~~ 166 (203)
++.+++|+.|++++|.++
T Consensus 566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~ 645 (768)
T 3rgz_A 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645 (768)
T ss_dssp CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence 223467889999999999
Q ss_pred cccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699 167 LNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK 202 (203)
Q Consensus 167 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~ 202 (203)
+.+|..+..+++|+.|+|++|.+ ...+|..+..++
T Consensus 646 g~ip~~l~~l~~L~~L~Ls~N~l-~g~ip~~l~~L~ 680 (768)
T 3rgz_A 646 GYIPKEIGSMPYLFILNLGHNDI-SGSIPDEVGDLR 680 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCC-CSCCCGGGGGCT
T ss_pred ccCCHHHhccccCCEEeCcCCcc-CCCCChHHhCCC
Confidence 99999999999999999999999 557899888775
No 8
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=2.2e-22 Score=147.90 Aligned_cols=176 Identities=20% Similarity=0.171 Sum_probs=116.6
Q ss_pred CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccc-cCccchhhhhccC
Q 037699 8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNN-LEGKIATSFGRLC 86 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~ 86 (203)
.++++.|++++|.++...+..+..+++|++|++++|. +....+..+..+++|++|++++|. ++...+..+..++
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~ 105 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-----LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-----cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc
Confidence 3477778888877776666667777778888887775 666666677777777777777776 5544466677777
Q ss_pred CccEEEccCCcCCcchhhhhhhc---cccccCCcccccccc---ccCCCCCEEEccCCccccccchhhhccCCCccEEEc
Q 037699 87 KLRSVFLSHSNMNQEISKILNIF---STCILDGLEVLEMTE---WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDV 160 (203)
Q Consensus 87 ~L~~L~l~~n~~~~~~~~~~~~~---~~~~~~~l~~l~~~~---~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l 160 (203)
+|++|++++|.+....+..+..+ ....+.+.....++. ..+++|+.|++++|.+. ..+...+..+++|+.|++
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc-ccCHHHhcCccccCEEEC
Confidence 77777777777766544433321 111111111111111 15677888888888775 444435677778888888
Q ss_pred cCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 161 SQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 161 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
++|.+++..+..+..+++|++|++++|.+
T Consensus 185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCCcccccCHhHccCcccccEeeCCCCcC
Confidence 88887766677777777888888888877
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.8e-21 Score=142.00 Aligned_cols=179 Identities=23% Similarity=0.232 Sum_probs=129.4
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
++++.|++++|.++...+..+..+++|++|++++|. +....+..+..+++|++|++++|.++...+..+..+++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 111 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-----LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-----CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-----cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC
Confidence 478888888888886666678888888888888886 665555566788888888888888885555667888888
Q ss_pred cEEEccCCcCCcchhhhhhhc---cccccCCcccccccc---ccCCCCCEEEccCCccccccchhhhccCCCccEEEccC
Q 037699 89 RSVFLSHSNMNQEISKILNIF---STCILDGLEVLEMTE---WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQ 162 (203)
Q Consensus 89 ~~L~l~~n~~~~~~~~~~~~~---~~~~~~~l~~l~~~~---~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~ 162 (203)
++|++++|.+....+..+..+ ....+.+...-.++. ..+++|+.|++++|.+. ..+...+..+++|+.|++++
T Consensus 112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~ 190 (270)
T 2o6q_A 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDN 190 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-EeChhHhccCCCcCEEECCC
Confidence 888888888876655443321 111122111111221 15688999999999885 44444677888999999999
Q ss_pred CccccccCCCCCCCCCccEEEcCCCCCCCCC
Q 037699 163 NSLTLNVSPDWIPPFQLKELNLESCNLVGNR 193 (203)
Q Consensus 163 n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 193 (203)
|.+++..+..+..+++|+.|++++|++.++.
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 191 NQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 9888655556778888999999999886554
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.5e-21 Score=142.39 Aligned_cols=159 Identities=23% Similarity=0.229 Sum_probs=122.8
Q ss_pred ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhh
Q 037699 4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFG 83 (203)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 83 (203)
.+..+++|+.|++++|.++...+..+..+++|++|++++|. +....+..+..+++|++|++++|.++...+..+.
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 130 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-----LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD 130 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-----CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-----CCcCCHhHcccccCCCEEECCCCccCeeCHHHhC
Confidence 56677799999999999986666667889999999999996 6666667788899999999999999877777788
Q ss_pred ccCCccEEEccCCcCCcchhhhhhh---ccccccCCcccccccc---ccCCCCCEEEccCCccccccchhhhccCCCccE
Q 037699 84 RLCKLRSVFLSHSNMNQEISKILNI---FSTCILDGLEVLEMTE---WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKY 157 (203)
Q Consensus 84 ~l~~L~~L~l~~n~~~~~~~~~~~~---~~~~~~~~l~~l~~~~---~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~ 157 (203)
.+++|++|++++|.+....+..+.. +....+.+.....++. ..+++|+.|++++|.+. ..+...+..+++|+.
T Consensus 131 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~ 209 (270)
T 2o6q_A 131 SLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKM 209 (270)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCE
T ss_pred cCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCE
Confidence 9999999999999888765544332 2222222222222222 16789999999999996 555557888999999
Q ss_pred EEccCCccccc
Q 037699 158 FDVSQNSLTLN 168 (203)
Q Consensus 158 L~l~~n~~~~~ 168 (203)
|++++|.+...
T Consensus 210 L~l~~N~~~c~ 220 (270)
T 2o6q_A 210 LQLQENPWDCT 220 (270)
T ss_dssp EECCSSCBCCS
T ss_pred EEecCCCeeCC
Confidence 99999998753
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.89 E-value=9.6e-22 Score=144.51 Aligned_cols=181 Identities=20% Similarity=0.175 Sum_probs=137.3
Q ss_pred cEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEE
Q 037699 12 VFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSV 91 (203)
Q Consensus 12 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 91 (203)
+.++.+++.++ .+|..+ .+++++|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~-----i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 85 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNR-----ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQL 85 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSC-----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCc-----CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEE
Confidence 57888988888 455443 5789999999997 777777789999999999999999997778889999999999
Q ss_pred EccCCc-CCcchhhhhhhc---cccccCCcccccccc---ccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCc
Q 037699 92 FLSHSN-MNQEISKILNIF---STCILDGLEVLEMTE---WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNS 164 (203)
Q Consensus 92 ~l~~n~-~~~~~~~~~~~~---~~~~~~~l~~l~~~~---~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~ 164 (203)
++++|. +....+..+..+ ....+.+.....++. ..+++|+.|++++|.+. ..+...+..+++|+.|++++|.
T Consensus 86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~ 164 (285)
T 1ozn_A 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNR 164 (285)
T ss_dssp ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred eCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCc
Confidence 999997 666545444322 111122222112211 25789999999999996 4454468889999999999999
Q ss_pred cccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699 165 LTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK 202 (203)
Q Consensus 165 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~ 202 (203)
+++..+..+..+++|++|++++|.+ .+..|.++..++
T Consensus 165 l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~ 201 (285)
T 1ozn_A 165 ISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLG 201 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCC-CEECTTTTTTCT
T ss_pred ccccCHHHhcCccccCEEECCCCcc-cccCHhHccCcc
Confidence 9866666788899999999999998 444466666554
No 12
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=4.2e-21 Score=140.26 Aligned_cols=160 Identities=27% Similarity=0.295 Sum_probs=105.5
Q ss_pred cCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccC
Q 037699 7 LSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLC 86 (203)
Q Consensus 7 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 86 (203)
.+++|+.|++++|.+++ + ..+..+++|++|++++|. +.+..+..+..+++|++|++++|.+++..+..+..++
T Consensus 61 ~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 133 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQ-----LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133 (272)
T ss_dssp GCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSC-----CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCc-----cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC
Confidence 34455666666665553 1 245555666666666654 4444444455556666666666665544444455556
Q ss_pred CccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccc
Q 037699 87 KLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166 (203)
Q Consensus 87 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~ 166 (203)
+|++|++++|.+....+..+. .+++|+.|++++|.+. ..+...+..+++|+.|++++|.++
T Consensus 134 ~L~~L~L~~n~l~~~~~~~~~------------------~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 134 NLTYLNLAHNQLQSLPKGVFD------------------KLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp TCCEEECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CCCEEECCCCccCccCHHHhc------------------cCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCC
Confidence 666666666655543333222 6788999999999996 444446788999999999999999
Q ss_pred cccCCCCCCCCCccEEEcCCCCCCCC
Q 037699 167 LNVSPDWIPPFQLKELNLESCNLVGN 192 (203)
Q Consensus 167 ~~~~~~l~~~~~L~~L~l~~n~l~~~ 192 (203)
+..+..+..+++|++|++++|.+.++
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ccCHHHHhCCcCCCEEEccCCCcccc
Confidence 77766788899999999999998543
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=6.9e-22 Score=146.68 Aligned_cols=179 Identities=22% Similarity=0.254 Sum_probs=112.4
Q ss_pred CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccc-cccCCCCCCCEEEccccccCccchhhhhccC
Q 037699 8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFS-SSVGNLTSIQTLDLSFNNLEGKIATSFGRLC 86 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 86 (203)
.++|+.|++++|.+. .++..+..+++|++|++++|. +....+ ..+..+++|++|++++|.+....+..+..++
T Consensus 77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 150 (306)
T 2z66_A 77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSN-----LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150 (306)
T ss_dssp CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSE-----EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCc-----ccccccchhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence 346666666666665 345556666666666666664 333332 3455666666666666666555555566666
Q ss_pred CccEEEccCCcCCc-chhhhhhh---ccccccCCccccccc---cccCCCCCEEEccCCccccccchhhhccCCCccEEE
Q 037699 87 KLRSVFLSHSNMNQ-EISKILNI---FSTCILDGLEVLEMT---EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFD 159 (203)
Q Consensus 87 ~L~~L~l~~n~~~~-~~~~~~~~---~~~~~~~~l~~l~~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~ 159 (203)
+|++|++++|.+.+ ..+..+.. +....+.+......+ ...+++|+.|++++|.+.+ .+...+..+++|+.|+
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~ 229 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLD 229 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB-CCSGGGTTCTTCCEEE
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc-cChhhccCcccCCEeE
Confidence 66666666665543 22222211 111111111111110 1167899999999999964 4433678899999999
Q ss_pred ccCCccccccCCCCCCCC-CccEEEcCCCCCCCCC
Q 037699 160 VSQNSLTLNVSPDWIPPF-QLKELNLESCNLVGNR 193 (203)
Q Consensus 160 l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~l~~~~ 193 (203)
+++|.+++..+..+..++ +|++|++++|.++++.
T Consensus 230 L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 230 YSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 999999988888888875 8999999999997654
No 14
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.88 E-value=4.1e-21 Score=149.76 Aligned_cols=175 Identities=26% Similarity=0.237 Sum_probs=103.3
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
++++.|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|.++...+..+..+++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-----IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-----cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence 356666666666665556666666666666666665 555555566666666666666666664444445666666
Q ss_pred cEEEccCCcCCcchhhhhhhccc--------------------cccCCccccccccc---------cCCCCCEEEccCCc
Q 037699 89 RSVFLSHSNMNQEISKILNIFST--------------------CILDGLEVLEMTEW---------QLSSLDSVNLSNNT 139 (203)
Q Consensus 89 ~~L~l~~n~~~~~~~~~~~~~~~--------------------~~~~~l~~l~~~~~---------~~~~L~~L~l~~n~ 139 (203)
++|++++|.+....+..+..+.. ..+.+++.+.+... .+++|+.|++++|.
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~ 229 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH 229 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCc
Confidence 66666666655433322211100 00222332222211 45567777777777
Q ss_pred cccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 140 LFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 140 l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
+.+..+. .+..+++|+.|++++|.+++..+..+..+++|++|+|++|.+
T Consensus 230 l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 230 FPEIRPG-SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp CSEECGG-GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcccCcc-cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC
Confidence 7533333 667777777777777777766666677777777777777777
No 15
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=2.7e-21 Score=142.51 Aligned_cols=171 Identities=23% Similarity=0.177 Sum_probs=86.0
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
++++.|++++|.+++..+..+..+++|++|++++|. +....+ . ..+++|++|++++|.++ .+|..+..+++|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~-~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L 102 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-----LTKLQV-D-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPAL 102 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-----CCEEEC-C-SCCTTCCEEECCSSCCS-SCCCCTTTCTTC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-----cCcccC-C-CCCCcCCEEECCCCcCC-cCchhhccCCCC
Confidence 456666666666665555566666667777776664 333222 1 45666666666666666 555566666667
Q ss_pred cEEEccCCcCCcchhhhhhhc---cccccCCcccccccc---ccCCCCCEEEccCCccccccchhhhccCCCccEEEccC
Q 037699 89 RSVFLSHSNMNQEISKILNIF---STCILDGLEVLEMTE---WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQ 162 (203)
Q Consensus 89 ~~L~l~~n~~~~~~~~~~~~~---~~~~~~~l~~l~~~~---~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~ 162 (203)
++|++++|.+....+..+..+ ..+.+.+...-.++. ..+++|+.|++++|.+. .++...+..+++|+.|++++
T Consensus 103 ~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~ 181 (290)
T 1p9a_G 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQE 181 (290)
T ss_dssp CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC-ccCHHHhcCcCCCCEEECCC
Confidence 777777666665444333311 111111111111111 03344555555555543 33333344445555555555
Q ss_pred CccccccCCCCCCCCCccEEEcCCCCC
Q 037699 163 NSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 163 n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
|.++ .+|..+...++|+.+++++|++
T Consensus 182 N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp SCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CcCC-ccChhhcccccCCeEEeCCCCc
Confidence 5554 3344444444455555555554
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=1.2e-20 Score=141.48 Aligned_cols=181 Identities=20% Similarity=0.207 Sum_probs=86.0
Q ss_pred cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699 5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR 84 (203)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 84 (203)
+..+++|++|++++|.+++..|..+..+++|++|++++|. +. .+|..+. ++|++|++++|.++...+..+..
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~ 143 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-----LK-ELPEKMP--KTLQELRVHENEITKVRKSVFNG 143 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-----CS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTT
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-----CC-ccChhhc--ccccEEECCCCcccccCHhHhcC
Confidence 3344455555555555554444555555555555555553 22 1222221 34445555555554444445666
Q ss_pred cCCccEEEccCCcCCc--chhhhhhhccccccCCccccc--------cccccCCCCCEEEccCCccccccchhhhccCCC
Q 037699 85 LCKLRSVFLSHSNMNQ--EISKILNIFSTCILDGLEVLE--------MTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSK 154 (203)
Q Consensus 85 l~~L~~L~l~~n~~~~--~~~~~~~~~~~~~~~~l~~l~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~ 154 (203)
+++|+++++++|.+.. ..+..+.. +..++.+. ++....++|+.|++++|.+.+..+. .+..+++
T Consensus 144 l~~L~~L~l~~n~l~~~~~~~~~~~~-----l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~ 217 (330)
T 1xku_A 144 LNQMIVVELGTNPLKSSGIENGAFQG-----MKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA-SLKGLNN 217 (330)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGG-----CTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG-GGTTCTT
T ss_pred CccccEEECCCCcCCccCcChhhccC-----CCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHH-HhcCCCC
Confidence 6667777776666643 12222211 12222222 1111224555566655555432222 4555555
Q ss_pred ccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699 155 LKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201 (203)
Q Consensus 155 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~ 201 (203)
|+.|++++|.+++..+..+..+++|++|++++|.+ ..+|.++..+
T Consensus 218 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l--~~lp~~l~~l 262 (330)
T 1xku_A 218 LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL--VKVPGGLADH 262 (330)
T ss_dssp CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC--SSCCTTTTTC
T ss_pred CCEEECCCCcCceeChhhccCCCCCCEEECCCCcC--ccCChhhccC
Confidence 66666666655544444455555555555555555 3455555443
No 17
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=7.9e-21 Score=145.47 Aligned_cols=190 Identities=23% Similarity=0.219 Sum_probs=115.0
Q ss_pred ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhh
Q 037699 4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFG 83 (203)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 83 (203)
.+..+++|+.|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|.++...+..+.
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 162 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-----LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTS
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-----cCcCCHHHhcCCCCCcEEECCCCccCccChhhcc
Confidence 44555567777777776665556666677777777777764 4444344456677777777777777655556667
Q ss_pred ccCCccEEEccCCcCCcchhhhhhhccccc-----------c---------------------CCcccccccc-------
Q 037699 84 RLCKLRSVFLSHSNMNQEISKILNIFSTCI-----------L---------------------DGLEVLEMTE------- 124 (203)
Q Consensus 84 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~-----------~---------------------~~l~~l~~~~------- 124 (203)
.+++|++|++++|.+.......+..+.... . .+++.+.+..
T Consensus 163 ~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~ 242 (390)
T 3o6n_A 163 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA 242 (390)
T ss_dssp SCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCG
T ss_pred CCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccH
Confidence 777777777777766554322222111100 0 0111111110
Q ss_pred --ccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699 125 --WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK 202 (203)
Q Consensus 125 --~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~ 202 (203)
..+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++ ++..+..+++|++|++++|.+ ..+|..+..++
T Consensus 243 ~l~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~l~ 318 (390)
T 3o6n_A 243 WLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL--LHVERNQPQFD 318 (390)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCC--CCCGGGHHHHT
T ss_pred HHcCCCCccEEECCCCcCCCcChh-HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcc--eecCccccccC
Confidence 1456777777777777543333 66777788888888887774 344556677888888888887 45776665543
No 18
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=5.2e-21 Score=148.68 Aligned_cols=174 Identities=25% Similarity=0.226 Sum_probs=87.9
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (203)
+++.|++++|.+....+..+..+++|++|++++|. +....+..+..+++|++|++++|.++...+..+..+++|+
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 139 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-----IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-----CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-----CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCc
Confidence 45555555555554444555555555555555554 4444444455555555555555555533333445555555
Q ss_pred EEEccCCcCCcchhhhhhhccc--------------------cccCCcccccccc---------ccCCCCCEEEccCCcc
Q 037699 90 SVFLSHSNMNQEISKILNIFST--------------------CILDGLEVLEMTE---------WQLSSLDSVNLSNNTL 140 (203)
Q Consensus 90 ~L~l~~n~~~~~~~~~~~~~~~--------------------~~~~~l~~l~~~~---------~~~~~L~~L~l~~n~l 140 (203)
+|++++|.+....+..+..+.. ..+.+++.+.+.. ..+++|+.|++++|.+
T Consensus 140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l 219 (440)
T 3zyj_A 140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL 219 (440)
T ss_dssp EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence 5555555544332222111000 0022222222211 1345666666666666
Q ss_pred ccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 141 FGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 141 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
.+..+ ..+..+++|+.|++++|.+++..+..+..+++|++|+|++|.+
T Consensus 220 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 220 SAIRP-GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp CEECT-TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred CccCh-hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 43222 2556666666666666666655555566666666666666666
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=3.8e-21 Score=149.86 Aligned_cols=94 Identities=24% Similarity=0.288 Sum_probs=53.9
Q ss_pred ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccc--cCCCCCCCEEEccccccCccchhh
Q 037699 4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSS--VGNLTSIQTLDLSFNNLEGKIATS 81 (203)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~ 81 (203)
.+..+++|++|++++|.+++..|..+.++++|++|++++|. +.+..+.. +..+++|++|++++|.+++..|..
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 148 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCN-----LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSC-----CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG
T ss_pred cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCC-----CCccccCcccccCcccCCEEECCCCccCccCccc
Confidence 34445566666666666655555566666666666666664 43322322 555666666666666666444443
Q ss_pred -hhccCCccEEEccCCcCCcch
Q 037699 82 -FGRLCKLRSVFLSHSNMNQEI 102 (203)
Q Consensus 82 -~~~l~~L~~L~l~~n~~~~~~ 102 (203)
+..+++|++|++++|.+....
T Consensus 149 ~~~~l~~L~~L~L~~n~l~~~~ 170 (455)
T 3v47_A 149 FFLNMRRFHVLDLTFNKVKSIC 170 (455)
T ss_dssp GGGGCTTCCEEECTTCCBSCCC
T ss_pred ccCCCCcccEEeCCCCcccccC
Confidence 566666666666666655443
No 20
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=1.3e-20 Score=151.59 Aligned_cols=190 Identities=23% Similarity=0.221 Sum_probs=122.0
Q ss_pred ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhh
Q 037699 4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFG 83 (203)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 83 (203)
.+..+++|+.|++++|.+++..+..++.+++|++|++++|. +....+..+..+++|++|++++|.+++..|..+.
T Consensus 94 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 168 (597)
T 3oja_B 94 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-----LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168 (597)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-----CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh
Confidence 45556677777777777776666666777777777777775 5554444556777777777777777766666677
Q ss_pred ccCCccEEEccCCcCCcchhhhhhhcccccc--------------------------------CCccccccc--------
Q 037699 84 RLCKLRSVFLSHSNMNQEISKILNIFSTCIL--------------------------------DGLEVLEMT-------- 123 (203)
Q Consensus 84 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~--------------------------------~~l~~l~~~-------- 123 (203)
.+++|++|++++|.+.......+..+....+ .+++.+.+.
T Consensus 169 ~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~ 248 (597)
T 3oja_B 169 ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTA 248 (597)
T ss_dssp TCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCG
T ss_pred cCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCCh
Confidence 7777777777777766543322221111000 011111111
Q ss_pred -cccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699 124 -EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK 202 (203)
Q Consensus 124 -~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~ 202 (203)
...+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++ ++..+..+++|+.|+|++|.+ ..+|.++..++
T Consensus 249 ~l~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l--~~i~~~~~~l~ 324 (597)
T 3oja_B 249 WLLNYPGLVEVDLSYNELEKIMYH-PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL--LHVERNQPQFD 324 (597)
T ss_dssp GGGGCTTCSEEECCSSCCCEEESG-GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCC--CCCGGGHHHHT
T ss_pred hhccCCCCCEEECCCCccCCCCHH-HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCC--CccCcccccCC
Confidence 11456788888888877644444 67778888888888888875 455566678888888888888 46777776554
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=5.2e-22 Score=160.71 Aligned_cols=189 Identities=12% Similarity=0.152 Sum_probs=144.6
Q ss_pred CCcccccCCcccEEecCCCccCCC-----------------CCcccc--CCCCccEEeCCCCcccccccccccccccCCC
Q 037699 1 MPWVFGLSDHLVFLDLSLNNFQGP-----------------IPRGLG--NLTSLRYLDLSANISILQYLSGTFSSSVGNL 61 (203)
Q Consensus 1 ~p~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 61 (203)
||..++.+++|+.|++++|.+++. +|..++ .+++|++|++++|. +.+.+|..+..+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-----l~~~~p~~l~~l 272 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-----NLTKLPTFLKAL 272 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-----TCSSCCTTTTTC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-----CCccChHHHhcC
Confidence 467788888999999999999975 899988 99999999999997 888899999999
Q ss_pred CCCCEEEccccc-cCc-cchhhhhcc------CCccEEEccCCcCCcchhh--hhhhcc---ccccCCcccc-cccc-cc
Q 037699 62 TSIQTLDLSFNN-LEG-KIATSFGRL------CKLRSVFLSHSNMNQEISK--ILNIFS---TCILDGLEVL-EMTE-WQ 126 (203)
Q Consensus 62 ~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~n~~~~~~~~--~~~~~~---~~~~~~l~~l-~~~~-~~ 126 (203)
++|++|++++|. +++ .+|..++.+ ++|++|++++|.+. ..|. .+..+. ...+.+.... .++. ..
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~ 351 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGS 351 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCC
Confidence 999999999998 887 789988887 99999999999998 4444 443221 1112222211 2221 15
Q ss_pred CCCCCEEEccCCccccccchhhhccCCC-ccEEEccCCccccccCCCCCCCC--CccEEEcCCCCCCCCCCchhhh
Q 037699 127 LSSLDSVNLSNNTLFGSLFEIHFAKLSK-LKYFDVSQNSLTLNVSPDWIPPF--QLKELNLESCNLVGNRFPSWLL 199 (203)
Q Consensus 127 ~~~L~~L~l~~n~l~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~l~~~~~p~~~~ 199 (203)
+++|+.|++++|.+. .++. .+..+++ |+.|++++|.++ .+|..+.... +|++|++++|.+ ....|.++.
T Consensus 352 l~~L~~L~L~~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l-~~~~p~~l~ 423 (636)
T 4eco_A 352 EIKLASLNLAYNQIT-EIPA-NFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI-GSVDGKNFD 423 (636)
T ss_dssp EEEESEEECCSSEEE-ECCT-TSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT-TTTTTCSSC
T ss_pred CCCCCEEECCCCccc-cccH-hhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC-CCcchhhhc
Confidence 567888888888885 5665 5777887 888888888888 6666665544 788888888888 444555554
No 22
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=2.7e-21 Score=143.92 Aligned_cols=170 Identities=19% Similarity=0.151 Sum_probs=106.4
Q ss_pred CCcccEEecCCCccCCCCCccc--cCCCCccEEeCCCCcccccccccccccccCCC-----CCCCEEEccccccCccchh
Q 037699 8 SDHLVFLDLSLNNFQGPIPRGL--GNLTSLRYLDLSANISILQYLSGTFSSSVGNL-----TSIQTLDLSFNNLEGKIAT 80 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~~~~~~~ 80 (203)
.++|++|++++|.+++..|..+ ..+++|++|++++|. +.+. |..+..+ ++|++|++++|.+++..+.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-----WATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-----CSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-----Ccch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 4578888888888777677665 777888888888875 5544 5555544 6777777777777766666
Q ss_pred hhhccCCccEEEccCCcCCcchh--hhhhhccccccCCccccccccc--------------cCCCCCEEEccCCcccccc
Q 037699 81 SFGRLCKLRSVFLSHSNMNQEIS--KILNIFSTCILDGLEVLEMTEW--------------QLSSLDSVNLSNNTLFGSL 144 (203)
Q Consensus 81 ~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~~~~~~~l~~l~~~~~--------------~~~~L~~L~l~~n~l~~~~ 144 (203)
.++.+++|++|++++|.+.+..+ ... ....+..++.+.+... .+++|+.|++++|.+.+..
T Consensus 168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 168 QVRVFPALSTLDLSDNPELGERGLISAL---CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp TCCCCSSCCEEECCSCTTCHHHHHHHHS---CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred HhccCCCCCEEECCCCCcCcchHHHHHH---HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 77777777777777777654311 111 0001222222221111 3467777777777776544
Q ss_pred chhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 145 FEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 145 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
+...+..+++|+.|++++|.++ .+|..+. ++|++|++++|++
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l 286 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRL 286 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCC
T ss_pred chhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCC
Confidence 3324455677777777777777 4555444 6777777777777
No 23
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=1.1e-20 Score=133.95 Aligned_cols=162 Identities=19% Similarity=0.252 Sum_probs=136.4
Q ss_pred ccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccE
Q 037699 11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRS 90 (203)
Q Consensus 11 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 90 (203)
-+.++++++.++ .+|..+. .+++.|++++|. +....+..+..+++|++|++++|.++...|..|..+++|++
T Consensus 13 ~~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~-----i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 13 NNIVDCRGKGLT-EIPTNLP--ETITEIRLEQNT-----IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp TTEEECTTSCCS-SCCSSCC--TTCCEEECCSSC-----CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred CCEEEcCCCCcC-cCCCccC--cCCCEEECCCCc-----CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 367899999888 5666554 689999999997 77777778999999999999999999777889999999999
Q ss_pred EEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccC
Q 037699 91 VFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVS 170 (203)
Q Consensus 91 L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 170 (203)
|++++|.+....+..+. .+++|+.|++++|.+.+ .+...+..+++|+.|++++|.+++..+
T Consensus 85 L~Ls~N~l~~l~~~~f~------------------~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFE------------------GLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp EECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EECCCCcCCccCHhHcc------------------CCCCCCEEECCCCCCCE-eCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 99999999866555444 67899999999999964 444478899999999999999997777
Q ss_pred CCCCCCCCccEEEcCCCCCCCCCCchhhh
Q 037699 171 PDWIPPFQLKELNLESCNLVGNRFPSWLL 199 (203)
Q Consensus 171 ~~l~~~~~L~~L~l~~n~l~~~~~p~~~~ 199 (203)
..+..+++|++|++++|.+.++.--.|+.
T Consensus 146 ~~~~~l~~L~~L~L~~N~~~c~c~l~~l~ 174 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPFICDCHLKWLA 174 (220)
T ss_dssp TTTTTCTTCCEEECCSSCEECSGGGHHHH
T ss_pred HHHhCCCCCCEEEeCCCCcCCCCccHHHH
Confidence 77888999999999999997765555553
No 24
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=3.1e-20 Score=134.09 Aligned_cols=166 Identities=22% Similarity=0.253 Sum_probs=138.6
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
...+.++++++.++ .+|..+. .+++.|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 85 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTG-----LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL 85 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSC-----CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCC-----cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC
Confidence 35788999999998 5666654 689999999997 788888889999999999999999997777889999999
Q ss_pred cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccc
Q 037699 89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN 168 (203)
Q Consensus 89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 168 (203)
++|++++|.+....+..+. .+++|+.|++++|.+. ..+...+..+++|+.|++++|.+++.
T Consensus 86 ~~L~L~~n~l~~~~~~~~~------------------~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 86 GTLGLANNQLASLPLGVFD------------------HLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSI 146 (251)
T ss_dssp CEEECTTSCCCCCCTTTTT------------------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CEEECCCCcccccChhHhc------------------ccCCCCEEEcCCCcCC-CcChhHhccCCcccEEECcCCcCCcc
Confidence 9999999999876655544 6789999999999996 55554678999999999999999976
Q ss_pred cCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699 169 VSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK 202 (203)
Q Consensus 169 ~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~ 202 (203)
.+..+..+++|++|++++|.++ ...+..+..++
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~ 179 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLG 179 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCT
T ss_pred CHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCC
Confidence 6667889999999999999993 33333455443
No 25
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.86 E-value=9e-21 Score=142.23 Aligned_cols=175 Identities=18% Similarity=0.182 Sum_probs=83.6
Q ss_pred cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699 5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR 84 (203)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 84 (203)
+..+++|++|++++|.+++..|..+..+++|++|++++|. +. .+|..+. ++|++|++++|.++...+..+..
T Consensus 74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~ 145 (332)
T 2ft3_A 74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-----LV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSG 145 (332)
T ss_dssp TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-----CC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSS
T ss_pred hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-----CC-ccCcccc--ccCCEEECCCCccCccCHhHhCC
Confidence 3344455555555555544444445555555555555553 22 2222222 44555555555555333445666
Q ss_pred cCCccEEEccCCcCCc--chhhhhhhc--ccccc-------------CCccccccc-----------cccCCCCCEEEcc
Q 037699 85 LCKLRSVFLSHSNMNQ--EISKILNIF--STCIL-------------DGLEVLEMT-----------EWQLSSLDSVNLS 136 (203)
Q Consensus 85 l~~L~~L~l~~n~~~~--~~~~~~~~~--~~~~~-------------~~l~~l~~~-----------~~~~~~L~~L~l~ 136 (203)
+++|++|++++|.+.. ..+..+..+ ....+ .+++.+.+. ...+++|+.|+++
T Consensus 146 l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 146 LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225 (332)
T ss_dssp CSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred CccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 7777777777776643 222222111 00000 112222111 0134455566666
Q ss_pred CCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 137 NNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 137 ~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
+|.+.+ .+...+..+++|+.|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 226 ~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 226 HNQIRM-IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp SSCCCC-CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred CCcCCc-CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 665543 22224555666666666666665 4455555566666666666665
No 26
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=2.3e-20 Score=146.42 Aligned_cols=62 Identities=21% Similarity=0.188 Sum_probs=35.8
Q ss_pred CCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 127 LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 127 ~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
+++|+.|++++|.+. ..+...+..+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus 247 l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 308 (477)
T 2id5_A 247 LVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308 (477)
T ss_dssp CTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCC
T ss_pred ccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcC
Confidence 345555555555553 22222455555666666666666655555666666777777777776
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=1.9e-21 Score=144.31 Aligned_cols=190 Identities=25% Similarity=0.210 Sum_probs=141.9
Q ss_pred ccccCCcccEEecCCCccCCC--CCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccch-h
Q 037699 4 VFGLSDHLVFLDLSLNNFQGP--IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIA-T 80 (203)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~ 80 (203)
.+..+++|+.|++++|.++.. .+..+..+++|++|++++|. +. .++..+..+++|++|++++|.++...+ .
T Consensus 47 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-----i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~ 120 (306)
T 2z66_A 47 VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-----VI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120 (306)
T ss_dssp TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-----EE-EEEEEEETCTTCCEEECTTSEEESSTTTT
T ss_pred HhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-----cc-cChhhcCCCCCCCEEECCCCcccccccch
Confidence 467778999999999998732 35667789999999999995 44 456678899999999999999985443 5
Q ss_pred hhhccCCccEEEccCCcCCcchhhhhhhc---cccccCCccccc--ccc--ccCCCCCEEEccCCccccccchhhhccCC
Q 037699 81 SFGRLCKLRSVFLSHSNMNQEISKILNIF---STCILDGLEVLE--MTE--WQLSSLDSVNLSNNTLFGSLFEIHFAKLS 153 (203)
Q Consensus 81 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~~~~~~l~~l~--~~~--~~~~~L~~L~l~~n~l~~~~~~~~l~~~~ 153 (203)
.+..+++|++|++++|.+....+..+..+ ....+.+..... .+. ..+++|+.|++++|.+.+..+. .+..++
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~ 199 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLS 199 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCT
T ss_pred hhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHH-HhcCCC
Confidence 78899999999999999876655544322 111122222111 121 2678999999999999644344 788899
Q ss_pred CccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699 154 KLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201 (203)
Q Consensus 154 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~ 201 (203)
+|+.|++++|.+++..+..+..+++|++|++++|.+ .+..|..+..+
T Consensus 200 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~~ 246 (306)
T 2z66_A 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI-MTSKKQELQHF 246 (306)
T ss_dssp TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC-CBCSSSSCCCC
T ss_pred CCCEEECCCCccCccChhhccCcccCCEeECCCCCC-cccCHHHHHhh
Confidence 999999999999876555678889999999999998 44455555544
No 28
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=2.2e-20 Score=145.61 Aligned_cols=90 Identities=18% Similarity=0.263 Sum_probs=75.8
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (203)
..+.++.++..++ .+|..+. +++++|++++|. +....+..+..+++|++|++++|.+++..+..|..+++|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 126 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENN-----IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLN 126 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSC-----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCc-----CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCC
Confidence 3567888888887 5665553 689999999997 8888888999999999999999999977778899999999
Q ss_pred EEEccCCcCCcchhhhhh
Q 037699 90 SVFLSHSNMNQEISKILN 107 (203)
Q Consensus 90 ~L~l~~n~~~~~~~~~~~ 107 (203)
+|++++|.+....+..+.
T Consensus 127 ~L~L~~n~l~~~~~~~~~ 144 (452)
T 3zyi_A 127 TLELFDNWLTVIPSGAFE 144 (452)
T ss_dssp EEECCSSCCSBCCTTTSS
T ss_pred EEECCCCcCCccChhhhc
Confidence 999999999876665443
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=2.7e-20 Score=137.12 Aligned_cols=155 Identities=22% Similarity=0.252 Sum_probs=106.6
Q ss_pred cccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhh
Q 037699 3 WVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSF 82 (203)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 82 (203)
..+..+++|+.|++++|.++...+ . ..+++|++|++++|. +. .+|..+..+++|++|++++|.++...+..|
T Consensus 49 ~~~~~l~~L~~L~L~~n~l~~~~~-~-~~l~~L~~L~Ls~N~-----l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~ 120 (290)
T 1p9a_G 49 ATLMPYTRLTQLNLDRAELTKLQV-D-GTLPVLGTLDLSHNQ-----LQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120 (290)
T ss_dssp GGGTTCTTCCEEECTTSCCCEEEC-C-SCCTTCCEEECCSSC-----CS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT
T ss_pred HHhhcCCCCCEEECCCCccCcccC-C-CCCCcCCEEECCCCc-----CC-cCchhhccCCCCCEEECCCCcCcccCHHHH
Confidence 345666788888888888774322 2 667888888888884 33 456667777888888888888875555667
Q ss_pred hccCCccEEEccCCcCCcchhhhhhh---ccccccCCcccccccc---ccCCCCCEEEccCCccccccchhhhccCCCcc
Q 037699 83 GRLCKLRSVFLSHSNMNQEISKILNI---FSTCILDGLEVLEMTE---WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLK 156 (203)
Q Consensus 83 ~~l~~L~~L~l~~n~~~~~~~~~~~~---~~~~~~~~l~~l~~~~---~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~ 156 (203)
..+++|++|++++|.+....+..+.. +....+.+...-.++. ..+++|+.|++++|.+. .++. .+.....|+
T Consensus 121 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~-~~~~~~~L~ 198 (290)
T 1p9a_G 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPK-GFFGSHLLP 198 (290)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCT-TTTTTCCCS
T ss_pred cCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccCh-hhcccccCC
Confidence 78888888888888777655544332 1111222222222222 15789999999999996 6666 456778999
Q ss_pred EEEccCCcccc
Q 037699 157 YFDVSQNSLTL 167 (203)
Q Consensus 157 ~L~l~~n~~~~ 167 (203)
.+++++|.+..
T Consensus 199 ~l~L~~Np~~C 209 (290)
T 1p9a_G 199 FAFLHGNPWLC 209 (290)
T ss_dssp EEECCSCCBCC
T ss_pred eEEeCCCCccC
Confidence 99999999864
No 30
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=3.3e-21 Score=155.16 Aligned_cols=69 Identities=22% Similarity=0.130 Sum_probs=38.3
Q ss_pred cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCC-CccEEEcCCCCCCCCCCch
Q 037699 126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPF-QLKELNLESCNLVGNRFPS 196 (203)
Q Consensus 126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~l~~~~~p~ 196 (203)
.+++|+.|++++|.+.+..+. .+..+++|+.|++++|+++ .+|..+..++ +|++|++++|++.++.-..
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGG-GTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred ccccCCEEECCCCcCCCcCHH-HccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 455666666666666433333 4556666666666666665 3444455554 4666666666665444333
No 31
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=8e-21 Score=133.44 Aligned_cols=163 Identities=23% Similarity=0.244 Sum_probs=109.9
Q ss_pred CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699 8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK 87 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 87 (203)
.++++.|++++|.++...+..+..+++|++|++++|. +....+..+..+++|++|++++|.++...+..+..+++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-----LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-----cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence 3467777777777775555566777777777777775 55555555677777777777777777444455677777
Q ss_pred ccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699 88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL 167 (203)
Q Consensus 88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~ 167 (203)
|++|++++|.+....+..+. .+++|+.|++++|.+. ..+...+..+++|+.|++++|.+.+
T Consensus 102 L~~L~L~~N~l~~~~~~~~~------------------~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 102 LKELALNTNQLQSLPDGVFD------------------KLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CCEEECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCEEEcCCCcCcccCHhHhc------------------cCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCeec
Confidence 77777777777654443333 5667777777777775 3444356677777777777776653
Q ss_pred ccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699 168 NVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK 202 (203)
Q Consensus 168 ~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~ 202 (203)
.+++|++|+++.|.+ ...+|.++..++
T Consensus 163 -------~~~~l~~L~~~~n~~-~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 -------TCPGIRYLSEWINKH-SGVVRNSAGSVA 189 (208)
T ss_dssp -------CTTTTHHHHHHHHHC-TTTBBCTTSSBC
T ss_pred -------CCCCHHHHHHHHHhC-CceeeccCcccc
Confidence 344677777777777 456777766654
No 32
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=3e-20 Score=135.95 Aligned_cols=179 Identities=18% Similarity=0.147 Sum_probs=97.5
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
++++.|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-----CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 356667777666665555566666666666666665 555555556666666666666666664445556666666
Q ss_pred cEEEccCCcCCcchhhhhhh---ccccccCCcccc--cccc--ccCCCCCEEEccCCccccccchhhhc-----------
Q 037699 89 RSVFLSHSNMNQEISKILNI---FSTCILDGLEVL--EMTE--WQLSSLDSVNLSNNTLFGSLFEIHFA----------- 150 (203)
Q Consensus 89 ~~L~l~~n~~~~~~~~~~~~---~~~~~~~~l~~l--~~~~--~~~~~L~~L~l~~n~l~~~~~~~~l~----------- 150 (203)
++|++++|.+....+..+.. +....+.+.... .++. ..+++|+.|++++|.+.+. +...+.
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-YCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-CGGGGHHHHTCTTCCEE
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-CHHHhhhhhhcccccee
Confidence 66666666655433322211 111111111111 1111 1445566666666655321 111121
Q ss_pred ----------------cCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCC
Q 037699 151 ----------------KLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNR 193 (203)
Q Consensus 151 ----------------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 193 (203)
...+|+.|++++|.+++..+..+..+++|++|++++|++.++.
T Consensus 182 L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp EECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred eecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 2235677777777777544445566777777788777775543
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=1.4e-20 Score=151.53 Aligned_cols=174 Identities=20% Similarity=0.247 Sum_probs=149.0
Q ss_pred CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccc-cccCCCCCCCEEEccccccCccchh
Q 037699 2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFS-SSVGNLTSIQTLDLSFNNLEGKIAT 80 (203)
Q Consensus 2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~ 80 (203)
|..+..+++|+.|++++|.++ ..|..+..+++|++|++++|. +.+..+ ..+..+++|++|++++|.+++..|.
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 442 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHST-----LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTCCEEECTTSE-----EESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred hhhhccCCcccEeECCCCccc-cchhhccCCCCCCeeECCCCc-----cCCccChhhhhccccCCEEECcCCCCCccchh
Confidence 445566779999999999988 466889999999999999997 666666 6788999999999999999988888
Q ss_pred hhhccCCccEEEccCCcCCcc-hhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEE
Q 037699 81 SFGRLCKLRSVFLSHSNMNQE-ISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFD 159 (203)
Q Consensus 81 ~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~ 159 (203)
.+..+++|++|++++|.+.+. .+..+. .+++|+.|++++|.+.+..+. .+..+++|+.|+
T Consensus 443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~ 503 (606)
T 3vq2_A 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFA------------------NTTNLTFLDLSKCQLEQISWG-VFDTLHRLQLLN 503 (606)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCT------------------TCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEE
T ss_pred hhcCCCCCCEEECCCCcCCCcchHHhhc------------------cCCCCCEEECCCCcCCccChh-hhcccccCCEEE
Confidence 999999999999999988762 343333 678999999999999754444 788999999999
Q ss_pred ccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699 160 VSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK 202 (203)
Q Consensus 160 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~ 202 (203)
+++|.+++..+..+..+++|++|++++|++ ..+|..+..++
T Consensus 504 Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l--~~~p~~~~~l~ 544 (606)
T 3vq2_A 504 MSHNNLLFLDSSHYNQLYSLSTLDCSFNRI--ETSKGILQHFP 544 (606)
T ss_dssp CCSSCCSCEEGGGTTTCTTCCEEECTTSCC--CCEESCGGGSC
T ss_pred CCCCcCCCcCHHHccCCCcCCEEECCCCcC--cccCHhHhhhc
Confidence 999999988888899999999999999999 47888776653
No 34
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=8.9e-20 Score=133.19 Aligned_cols=167 Identities=25% Similarity=0.283 Sum_probs=136.6
Q ss_pred cCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccC
Q 037699 7 LSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLC 86 (203)
Q Consensus 7 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 86 (203)
..++|+.+++++|.+.. . ..+..+++|++|++++|. +.+. ..+..+++|++|++++|.+++..+..+..++
T Consensus 39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~-----l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 109 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNK-----LHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLT 109 (272)
T ss_dssp HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSC-----CCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCC-----CCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCc
Confidence 34589999999999873 3 358889999999999996 5442 4688999999999999999976677789999
Q ss_pred CccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccc
Q 037699 87 KLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166 (203)
Q Consensus 87 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~ 166 (203)
+|++|++++|.+....+..+. .+++|+.|++++|.+. ..+...+..+++|+.|++++|.++
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~------------------~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~ 170 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFD------------------KLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQ 170 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTT------------------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCEEECCCCcCCccCHHHhc------------------cCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcC
Confidence 999999999998876555444 6789999999999996 455446789999999999999999
Q ss_pred cccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699 167 LNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK 202 (203)
Q Consensus 167 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~ 202 (203)
+..+..+..+++|++|++++|.++ ...|..+..++
T Consensus 171 ~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~ 205 (272)
T 3rfs_A 171 SLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLT 205 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCT
T ss_pred ccCHHHhcCCccCCEEECCCCcCC-ccCHHHHhCCc
Confidence 766667888999999999999993 33444455543
No 35
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.85 E-value=1.7e-21 Score=157.67 Aligned_cols=167 Identities=13% Similarity=0.191 Sum_probs=134.8
Q ss_pred CCccccCCCCccEEeCCCCcccccccccc-----------------cccccC--CCCCCCEEEccccccCccchhhhhcc
Q 037699 25 IPRGLGNLTSLRYLDLSANISILQYLSGT-----------------FSSSVG--NLTSIQTLDLSFNNLEGKIATSFGRL 85 (203)
Q Consensus 25 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-----------------~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l 85 (203)
+|..++++++|++|++++|. +.+. +|..+. .+++|++|++++|.+.+.+|..++.+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~-----l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSP-----FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCC-----CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCHHHhcccCCCEEECcCCc-----cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 67789999999999999997 6664 899988 99999999999999999999999999
Q ss_pred CCccEEEccCCc-CCc-chhhhhhhc---------cccccCCcccccccc----ccCCCCCEEEccCCccccccchhhhc
Q 037699 86 CKLRSVFLSHSN-MNQ-EISKILNIF---------STCILDGLEVLEMTE----WQLSSLDSVNLSNNTLFGSLFEIHFA 150 (203)
Q Consensus 86 ~~L~~L~l~~n~-~~~-~~~~~~~~~---------~~~~~~~l~~l~~~~----~~~~~L~~L~l~~n~l~~~~~~~~l~ 150 (203)
++|++|++++|. +.+ ..|..+..+ ....+.+...-.++. ..+++|+.|++++|.+.+.++ .+.
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~ 350 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFG 350 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhC
Confidence 999999999998 876 566554332 222222222223443 277889999999999976777 578
Q ss_pred cCCCccEEEccCCccccccCCCCCCCCC-ccEEEcCCCCCCCCCCchhhhcc
Q 037699 151 KLSKLKYFDVSQNSLTLNVSPDWIPPFQ-LKELNLESCNLVGNRFPSWLLSQ 201 (203)
Q Consensus 151 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~p~~~~~~ 201 (203)
.+++|+.|++++|.++ .+|..+..+++ |++|++++|.+ ..+|.++..+
T Consensus 351 ~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l--~~lp~~~~~~ 399 (636)
T 4eco_A 351 SEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKL--KYIPNIFDAK 399 (636)
T ss_dssp EEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCC--SSCCSCCCTT
T ss_pred CCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcC--cccchhhhhc
Confidence 8899999999999998 77788888888 99999999999 3788876543
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=2e-20 Score=143.23 Aligned_cols=188 Identities=15% Similarity=0.108 Sum_probs=136.1
Q ss_pred ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhh
Q 037699 4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFG 83 (203)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 83 (203)
.+..+++|+.|++++|.++...+..+..+++|++|++++|. +....|..+..+++|++|++++|.++...+..+.
T Consensus 64 ~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 138 (390)
T 3o6n_A 64 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-----IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 138 (390)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred HhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-----CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhc
Confidence 35666799999999999987777789999999999999997 7777788889999999999999999844344468
Q ss_pred ccCCccEEEccCCcCCcchhhhhhhccc---cccC-------------Ccccccccc-----------------------
Q 037699 84 RLCKLRSVFLSHSNMNQEISKILNIFST---CILD-------------GLEVLEMTE----------------------- 124 (203)
Q Consensus 84 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~---~~~~-------------~l~~l~~~~----------------------- 124 (203)
.+++|++|++++|.+....+..+..+.. ..+. +++.+.+..
T Consensus 139 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~ 218 (390)
T 3o6n_A 139 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 218 (390)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCC
T ss_pred CCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeee
Confidence 8999999999999988766554432211 1111 111111100
Q ss_pred ----ccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhc
Q 037699 125 ----WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLS 200 (203)
Q Consensus 125 ----~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~ 200 (203)
...++|+.|++++|.+.+. . .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+ ..+|..+..
T Consensus 219 ~~~~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l--~~~~~~~~~ 293 (390)
T 3o6n_A 219 VVRGPVNVELTILKLQHNNLTDT--A-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL--VALNLYGQP 293 (390)
T ss_dssp EEECCCCSSCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCC--CEEECSSSC
T ss_pred eccccccccccEEECCCCCCccc--H-HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcC--cccCcccCC
Confidence 0112455666666666432 2 567888999999999999877778888899999999999998 445555443
Q ss_pred c
Q 037699 201 Q 201 (203)
Q Consensus 201 ~ 201 (203)
+
T Consensus 294 l 294 (390)
T 3o6n_A 294 I 294 (390)
T ss_dssp C
T ss_pred C
Confidence 3
No 37
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=3.8e-20 Score=131.08 Aligned_cols=163 Identities=18% Similarity=0.238 Sum_probs=135.1
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccc-cccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFS-SSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
.-+.++++++.++ .+|..+. ..+++|++++|. +....+ ..+..+++|++|++++|.+++..+..|..+++|
T Consensus 12 ~~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~-----l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 12 EGTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNE-----FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCSEEECCSSC-----CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCc-----CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 3468999999998 5666553 456899999996 666544 457899999999999999997667789999999
Q ss_pred cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccc
Q 037699 89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN 168 (203)
Q Consensus 89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 168 (203)
++|++++|.+....+..+. .+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++.
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~------------------~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFK------------------GLESLKTLMLRSNRITCVGND-SFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp CEEECCSSCCCCCCGGGGT------------------TCSSCCEEECTTSCCCCBCTT-SSTTCTTCSEEECTTSCCCCB
T ss_pred CEEECCCCccCccCHhHhc------------------CCcCCCEEECCCCcCCeECHh-HcCCCccCCEEECCCCcCCEE
Confidence 9999999999877666555 688999999999999744444 788999999999999999987
Q ss_pred cCCCCCCCCCccEEEcCCCCCCCCCCchhhh
Q 037699 169 VSPDWIPPFQLKELNLESCNLVGNRFPSWLL 199 (203)
Q Consensus 169 ~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~ 199 (203)
.+..+..+++|++|++++|.+.++.--.|+.
T Consensus 145 ~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~ 175 (220)
T 2v70_A 145 APGAFDTLHSLSTLNLLANPFNCNCYLAWLG 175 (220)
T ss_dssp CTTTTTTCTTCCEEECCSCCEECSGGGHHHH
T ss_pred CHHHhcCCCCCCEEEecCcCCcCCCchHHHH
Confidence 7888999999999999999997765544443
No 38
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=5.7e-21 Score=158.34 Aligned_cols=182 Identities=14% Similarity=0.185 Sum_probs=132.1
Q ss_pred CCcccccCCcccEEecCCCccCCC-----------------CCcccc--CCCCccEEeCCCCcccccccccccccccCCC
Q 037699 1 MPWVFGLSDHLVFLDLSLNNFQGP-----------------IPRGLG--NLTSLRYLDLSANISILQYLSGTFSSSVGNL 61 (203)
Q Consensus 1 ~p~~~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~ 61 (203)
||..++.+++|+.|++++|.+++. +|..++ .+++|++|++++|. +.+.+|..+..+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~-----l~~~iP~~l~~L 514 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP-----NMTQLPDFLYDL 514 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT-----TCCSCCGGGGGC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC-----CCccChHHHhCC
Confidence 467777888999999999999872 888877 99999999999997 788889999999
Q ss_pred CCCCEEEccccc-cCc-cchhhhhccC-------CccEEEccCCcCCcchhh--hhhhcc---ccccCCcccccccc-cc
Q 037699 62 TSIQTLDLSFNN-LEG-KIATSFGRLC-------KLRSVFLSHSNMNQEISK--ILNIFS---TCILDGLEVLEMTE-WQ 126 (203)
Q Consensus 62 ~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~n~~~~~~~~--~~~~~~---~~~~~~l~~l~~~~-~~ 126 (203)
++|++|++++|. +++ .+|..++.++ +|++|++++|.+. ..|. .+..+. .+.+.+...-.++. ..
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~ 593 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGT 593 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCT
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccchhhcC
Confidence 999999999998 887 7888877776 9999999999988 4444 343221 11122211112222 25
Q ss_pred CCCCCEEEccCCccccccchhhhccCCC-ccEEEccCCccccccCCCCCCCC--CccEEEcCCCCCCC
Q 037699 127 LSSLDSVNLSNNTLFGSLFEIHFAKLSK-LKYFDVSQNSLTLNVSPDWIPPF--QLKELNLESCNLVG 191 (203)
Q Consensus 127 ~~~L~~L~l~~n~l~~~~~~~~l~~~~~-L~~L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~l~~ 191 (203)
+++|+.|++++|.+. .++. .+..+++ |+.|++++|.++ .+|..+.... +|+.|++++|.+.+
T Consensus 594 L~~L~~L~Ls~N~l~-~lp~-~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g 658 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-EIPE-DFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGS 658 (876)
T ss_dssp TSEESEEECCSSCCS-CCCT-TSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTT
T ss_pred CCcceEEECcCCccc-cchH-HHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCC
Confidence 667777777777775 5555 4666777 788888887777 5565555544 37788888877743
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=6.6e-20 Score=142.87 Aligned_cols=65 Identities=20% Similarity=0.143 Sum_probs=36.2
Q ss_pred cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCC
Q 037699 126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVG 191 (203)
Q Consensus 126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 191 (203)
.+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++..+..+..+++|++|++++|++++
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQ-SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcccCCEEECCCCcccccChh-hccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 345566666666655432232 45556666666666666654444445556666666666666643
No 40
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=3e-20 Score=145.68 Aligned_cols=167 Identities=22% Similarity=0.237 Sum_probs=87.7
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
++++.|++++|.+++..+..+..+++|++|++++|. +....|..+..+++|++|++++|.++...+..+..+++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI-----VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCc-----cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 356666666666665555566666666666666664 555555666666666666666666653333445566666
Q ss_pred cEEEccCCcCCcchhhhhhhccccccCCccccccc-----------cccCCCCCEEEccCCccccccchhhhccCCCccE
Q 037699 89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT-----------EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKY 157 (203)
Q Consensus 89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~-----------~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~ 157 (203)
++|++++|.+....+..+.. +.+++.+.+. ...+++|+.|++++|.+. ..+...+..+++|+.
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQD-----LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIV 180 (477)
T ss_dssp CEEECTTSCCCEECTTTTTT-----CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCE
T ss_pred CEEECCCCccccCChhHccc-----cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcE
Confidence 66666666655444333321 1112222111 014455666666666554 333334555555555
Q ss_pred EEccCCccccccCCCCCCCCCccEEEcCC
Q 037699 158 FDVSQNSLTLNVSPDWIPPFQLKELNLES 186 (203)
Q Consensus 158 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 186 (203)
|++++|.+++..+..+..+++|++|++++
T Consensus 181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 181 LRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp EEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred EeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 55555555543333444444444444433
No 41
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=6.4e-21 Score=141.89 Aligned_cols=181 Identities=20% Similarity=0.217 Sum_probs=137.3
Q ss_pred ccEEecCCCccC-CCCCcccc-------CCCCccEEeCCCCccccccccccccccc--CCCCCCCEEEccccccCccchh
Q 037699 11 LVFLDLSLNNFQ-GPIPRGLG-------NLTSLRYLDLSANISILQYLSGTFSSSV--GNLTSIQTLDLSFNNLEGKIAT 80 (203)
Q Consensus 11 L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~ 80 (203)
++.|++++|.+. ...+..+. .+++|++|++++|. +.+..|..+ ..+++|++|++++|.+++. |.
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~ 138 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE-----VTGTAPPPLLEATGPDLNILNLRNVSWATR-DA 138 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEB-----CBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SS
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCc-----ccchhHHHHHHhcCCCccEEEccCCCCcch-hH
Confidence 788899999884 34565554 78999999999997 777778876 8899999999999999966 78
Q ss_pred hhhcc-----CCccEEEccCCcCCcchhhhhhhccc---cccCCccccc---c--cc--ccCCCCCEEEccCCcccc--c
Q 037699 81 SFGRL-----CKLRSVFLSHSNMNQEISKILNIFST---CILDGLEVLE---M--TE--WQLSSLDSVNLSNNTLFG--S 143 (203)
Q Consensus 81 ~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~~---~~~~~l~~l~---~--~~--~~~~~L~~L~l~~n~l~~--~ 143 (203)
.+..+ ++|++|++++|.+....+..+..+.. ..+.+..... . .. ..+++|+.|++++|.+.+ .
T Consensus 139 ~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 218 (312)
T 1wwl_A 139 WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG 218 (312)
T ss_dssp HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH
T ss_pred HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH
Confidence 78877 89999999999998776655543221 1122222111 1 11 367899999999999963 2
Q ss_pred cchhhhccCCCccEEEccCCccccccC-CCCCCCCCccEEEcCCCCCCCCCCchhhh
Q 037699 144 LFEIHFAKLSKLKYFDVSQNSLTLNVS-PDWIPPFQLKELNLESCNLVGNRFPSWLL 199 (203)
Q Consensus 144 ~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~p~~~~ 199 (203)
.+...+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+ ..+|.++.
T Consensus 219 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l--~~ip~~~~ 273 (312)
T 1wwl_A 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL--KQVPKGLP 273 (312)
T ss_dssp HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC--SSCCSSCC
T ss_pred HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc--Chhhhhcc
Confidence 333355678999999999999997664 4566688999999999999 47887664
No 42
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.84 E-value=7.4e-20 Score=133.84 Aligned_cols=159 Identities=20% Similarity=0.219 Sum_probs=100.1
Q ss_pred cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCc-cchhhhh
Q 037699 5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEG-KIATSFG 83 (203)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~ 83 (203)
+..+++|+.|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|.++. .+|..+.
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~ 146 (276)
T 2z62_A 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-----LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146 (276)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-----CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG
T ss_pred ccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-----ccccCchhcccCCCCCEEECcCCccceecCchhhc
Confidence 3444455555555555554444555555556666665554 444444456677777777777777764 3577778
Q ss_pred ccCCccEEEccCCcCCcchhhhhhhccc-------cccCCcccccc--ccccCCCCCEEEccCCccccccchhhhccCCC
Q 037699 84 RLCKLRSVFLSHSNMNQEISKILNIFST-------CILDGLEVLEM--TEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSK 154 (203)
Q Consensus 84 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~-------~~~~~l~~l~~--~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~ 154 (203)
.+++|++|++++|.+....+..+..+.. ..+.+.....+ ......+|+.|++++|.+. ..+...+..+++
T Consensus 147 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~ 225 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTS 225 (276)
T ss_dssp GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCS
T ss_pred cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCcee-ecCHhHhccccc
Confidence 8888888888888877655444432221 11111111111 1224458999999999996 555557789999
Q ss_pred ccEEEccCCcccccc
Q 037699 155 LKYFDVSQNSLTLNV 169 (203)
Q Consensus 155 L~~L~l~~n~~~~~~ 169 (203)
|+.|++++|.+++..
T Consensus 226 L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 226 LQKIWLHTNPWDCSC 240 (276)
T ss_dssp CCEEECCSSCBCCCT
T ss_pred ccEEEccCCcccccC
Confidence 999999999998643
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=5.6e-20 Score=142.87 Aligned_cols=169 Identities=22% Similarity=0.259 Sum_probs=112.6
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (203)
..+.++.++..++ .+|..+. .+++.|++++|. +....+..+..+++|++|++++|.++...+..|..+++|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~ 115 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQ-----IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLN 115 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCC-----CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCc-----CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCC
Confidence 4567888888887 5676554 789999999997 7777788899999999999999999977778899999999
Q ss_pred EEEccCCcCCcchhhhhhhcc---cccc----------------CCcccccccc------------ccCCCCCEEEccCC
Q 037699 90 SVFLSHSNMNQEISKILNIFS---TCIL----------------DGLEVLEMTE------------WQLSSLDSVNLSNN 138 (203)
Q Consensus 90 ~L~l~~n~~~~~~~~~~~~~~---~~~~----------------~~l~~l~~~~------------~~~~~L~~L~l~~n 138 (203)
+|++++|.+....+..+..+. .+.+ .+++.+.+.. ..+++|+.|++++|
T Consensus 116 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n 195 (440)
T 3zyj_A 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC 195 (440)
T ss_dssp EEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS
T ss_pred EEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC
Confidence 999999999876654443221 1111 1222222111 02344555555555
Q ss_pred ccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 139 TLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 139 ~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
.+. .++ .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus 196 ~l~-~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 196 NLR-EIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp CCS-SCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred cCc-ccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence 543 222 244555566666666666655555566666666666666666
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=2.9e-20 Score=149.59 Aligned_cols=188 Identities=14% Similarity=0.113 Sum_probs=139.7
Q ss_pred ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhh
Q 037699 4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFG 83 (203)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 83 (203)
.+..+++|+.|++++|.+++..+..+..+++|++|++++|. +....|..+..+++|++|++++|.++...+..|.
T Consensus 70 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~ 144 (597)
T 3oja_B 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-----IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFH 144 (597)
T ss_dssp HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-----CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhc
Confidence 45566799999999999997777899999999999999997 7788788889999999999999999854455578
Q ss_pred ccCCccEEEccCCcCCcchhhhhhhccc---cccCCccccccccccC---------------------------------
Q 037699 84 RLCKLRSVFLSHSNMNQEISKILNIFST---CILDGLEVLEMTEWQL--------------------------------- 127 (203)
Q Consensus 84 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~---~~~~~l~~l~~~~~~~--------------------------------- 127 (203)
.+++|++|++++|.+....+..+..+.. +.+.+...-.++...+
T Consensus 145 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 145 NTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN 224 (597)
T ss_dssp TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCC
T ss_pred cCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCccc
Confidence 9999999999999998776655443211 1111111111111111
Q ss_pred -------CCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhc
Q 037699 128 -------SSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLS 200 (203)
Q Consensus 128 -------~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~ 200 (203)
++|+.|++++|.+.+ +. .+..+++|+.|++++|.+++..+..+..+++|+.|+|++|.+ ..+|..+..
T Consensus 225 ~~~~~~~~~L~~L~L~~n~l~~--~~-~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l--~~l~~~~~~ 299 (597)
T 3oja_B 225 VVRGPVNVELTILKLQHNNLTD--TA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL--VALNLYGQP 299 (597)
T ss_dssp EEECSCCSCCCEEECCSSCCCC--CG-GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCC--CEEECSSSC
T ss_pred ccccccCCCCCEEECCCCCCCC--Ch-hhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCC--CCCCccccc
Confidence 245556666666543 22 577889999999999999988888889999999999999998 345655544
Q ss_pred c
Q 037699 201 Q 201 (203)
Q Consensus 201 ~ 201 (203)
+
T Consensus 300 l 300 (597)
T 3oja_B 300 I 300 (597)
T ss_dssp C
T ss_pred C
Confidence 4
No 45
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=3.8e-20 Score=149.04 Aligned_cols=92 Identities=29% Similarity=0.378 Sum_probs=63.9
Q ss_pred ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh-hh
Q 037699 4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT-SF 82 (203)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~ 82 (203)
.+..+++|+.|++++|.++ .+|..+..+++|++|++++|. +....|..+..+++|++|++++|.+.+.++. .+
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 346 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK-----FENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC-----CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCC-----cCcCchhhhhccCcCCEEECCCCCcccccchhhh
Confidence 4666678888888888887 677778888888888888886 5555566666667777777777666544433 35
Q ss_pred hccCCccEEEccCCcCCcc
Q 037699 83 GRLCKLRSVFLSHSNMNQE 101 (203)
Q Consensus 83 ~~l~~L~~L~l~~n~~~~~ 101 (203)
..+++|++|++++|.+...
T Consensus 347 ~~l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETS 365 (606)
T ss_dssp TTCTTCCEEECCSSCCCEE
T ss_pred hccCcCCEEECCCCccccc
Confidence 6666666666666666543
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=2.4e-20 Score=141.04 Aligned_cols=158 Identities=22% Similarity=0.211 Sum_probs=113.4
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
++|+.|++++|.+++..+..+..+++|++|++++|. +.+..+..+..+++|++|++++|.++...+..+..+++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 126 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-----INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSL 126 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc-----cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccC
Confidence 489999999999987666688999999999999996 777777888999999999999999985555558889999
Q ss_pred cEEEccCCcCCcchh-hhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699 89 RSVFLSHSNMNQEIS-KILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL 167 (203)
Q Consensus 89 ~~L~l~~n~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~ 167 (203)
++|++++|.+..... ..+. .+++|+.|++++|...+..+...+..+++|+.|++++|.+++
T Consensus 127 ~~L~L~~n~l~~l~~~~~~~------------------~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 127 TFLNLLGNPYKTLGETSLFS------------------HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SEEECTTCCCSSSCSSCSCT------------------TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CEEECCCCCCcccCchhhhc------------------cCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 999999998875433 2222 455666666666632223333345566666666666666665
Q ss_pred ccCCCCCCCCCccEEEcCCCCC
Q 037699 168 NVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 168 ~~~~~l~~~~~L~~L~l~~n~l 189 (203)
..+..+..+++|++|++++|.+
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCS
T ss_pred cCHHHHhccccCCeecCCCCcc
Confidence 5555566666666666666655
No 47
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=7.1e-20 Score=147.42 Aligned_cols=189 Identities=25% Similarity=0.234 Sum_probs=117.4
Q ss_pred ccccCCcccEEecCCCccCCCC--CccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh-
Q 037699 4 VFGLSDHLVFLDLSLNNFQGPI--PRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT- 80 (203)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~- 80 (203)
.+..+++|+.|++++|.+++.. +..+..+++|++|++++|. +.+..+..+..+++|++|++++|.+++..+.
T Consensus 345 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 419 (606)
T 3t6q_A 345 CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-----PLSLKTEAFKECPQLELLDLAFTRLKVKDAQS 419 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-----CEEECTTTTTTCTTCSEEECTTCCEECCTTCC
T ss_pred hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-----CCcCCHHHhcCCccCCeEECCCCcCCCcccch
Confidence 3556667888888888776543 5667777788888888775 6666667777777777777777777654443
Q ss_pred hhhccCCccEEEccCCcCCcchhhhhhhc---cccccCCccccc--cc----cccCCCCCEEEccCCccccccchhhhcc
Q 037699 81 SFGRLCKLRSVFLSHSNMNQEISKILNIF---STCILDGLEVLE--MT----EWQLSSLDSVNLSNNTLFGSLFEIHFAK 151 (203)
Q Consensus 81 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~~~~~~l~~l~--~~----~~~~~~L~~L~l~~n~l~~~~~~~~l~~ 151 (203)
.+..+++|++|++++|.+....+..+..+ ....+.+..... ++ ...+++|+.|++++|.+.+..+. .+..
T Consensus 420 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~ 498 (606)
T 3t6q_A 420 PFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH-AFTS 498 (606)
T ss_dssp TTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT-TTTT
T ss_pred hhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh-hhcc
Confidence 36677777777777777765544443321 111111111100 00 11456777777777777543333 5667
Q ss_pred CCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhc
Q 037699 152 LSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLS 200 (203)
Q Consensus 152 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~ 200 (203)
+++|+.|++++|.+++..+..+..+++| +|++++|.+ ....|..+..
T Consensus 499 l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l-~~~~~~~~~~ 545 (606)
T 3t6q_A 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI-SIILPSLLPI 545 (606)
T ss_dssp CTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCC-CCCCGGGHHH
T ss_pred ccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcc-cccCHhhccc
Confidence 7777777777777776666666777777 777777777 3334444443
No 48
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=2.1e-20 Score=154.99 Aligned_cols=165 Identities=13% Similarity=0.183 Sum_probs=113.4
Q ss_pred CCccccCCCCccEEeCCCCccccccccc-----------------ccccccC--CCCCCCEEEccccccCccchhhhhcc
Q 037699 25 IPRGLGNLTSLRYLDLSANISILQYLSG-----------------TFSSSVG--NLTSIQTLDLSFNNLEGKIATSFGRL 85 (203)
Q Consensus 25 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----------------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l 85 (203)
+|..+.++++|++|++++|. +.+ .+|..+. .+++|++|++++|.+.+.+|..++.+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~-----Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSP-----FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCC-----CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred hhHHHhcCCCCCEEECcCCc-----CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 56677788888888888886 554 2677776 88888888888888877888888888
Q ss_pred CCccEEEccCCc-CCc-chhhhhhhcc----------ccccCCcccccccc----ccCCCCCEEEccCCccccccchhhh
Q 037699 86 CKLRSVFLSHSN-MNQ-EISKILNIFS----------TCILDGLEVLEMTE----WQLSSLDSVNLSNNTLFGSLFEIHF 149 (203)
Q Consensus 86 ~~L~~L~l~~n~-~~~-~~~~~~~~~~----------~~~~~~l~~l~~~~----~~~~~L~~L~l~~n~l~~~~~~~~l 149 (203)
++|++|++++|. +.+ ..|..+..+. .+.+.+...-.+|. ..+++|+.|++++|.+. .++ .+
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~ 591 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE--AF 591 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC--CC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch--hh
Confidence 888888888887 665 5555443322 11122222223333 25677777777777775 555 56
Q ss_pred ccCCCccEEEccCCccccccCCCCCCCCC-ccEEEcCCCCCCCCCCchhhhc
Q 037699 150 AKLSKLKYFDVSQNSLTLNVSPDWIPPFQ-LKELNLESCNLVGNRFPSWLLS 200 (203)
Q Consensus 150 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~p~~~~~ 200 (203)
+.+++|+.|++++|.++ .+|..+..+++ |+.|++++|.+ ..+|.++..
T Consensus 592 ~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L--~~lp~~~~~ 640 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKL--KYIPNIFNA 640 (876)
T ss_dssp CTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCC--CSCCSCCCT
T ss_pred cCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCC--CcCchhhhc
Confidence 77777777788777777 66666777777 88888888777 366766544
No 49
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.83 E-value=3.8e-19 Score=126.71 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=129.6
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (203)
.-+.++++++.++ .+|..+. ++|++|++++|. +....+..+..+++|++|++++|.++...+..+..+++|+
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 91 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQ-----ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT 91 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCc-----cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence 4567888888887 5665543 889999999997 7777788899999999999999999855556678999999
Q ss_pred EEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccccc
Q 037699 90 SVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNV 169 (203)
Q Consensus 90 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 169 (203)
+|++++|.+....+..+. .+++|+.|++++|.+. .++. .+..+++|+.|++++|.++...
T Consensus 92 ~L~Ls~N~l~~l~~~~~~------------------~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 92 VLDLGTNQLTVLPSAVFD------------------RLVHLKELFMCCNKLT-ELPR-GIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp EEECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCCC-SCCT-TGGGCTTCSEEECCSSCCCCCC
T ss_pred EEECCCCcCCccChhHhC------------------cchhhCeEeccCCccc-ccCc-ccccCCCCCEEECCCCcCCccC
Confidence 999999998866555444 6789999999999996 6666 5788999999999999999666
Q ss_pred CCCCCCCCCccEEEcCCCCCCCCC
Q 037699 170 SPDWIPPFQLKELNLESCNLVGNR 193 (203)
Q Consensus 170 ~~~l~~~~~L~~L~l~~n~l~~~~ 193 (203)
+..+..+++|+.|++++|.+.++.
T Consensus 152 ~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 152 HGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp TTTTTTCTTCCEEECTTSCBCTTB
T ss_pred HHHHhCCCCCCEEEeeCCCccCCc
Confidence 667888999999999999996553
No 50
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=3.9e-19 Score=133.18 Aligned_cols=178 Identities=20% Similarity=0.230 Sum_probs=125.7
Q ss_pred CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCc--cch
Q 037699 2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEG--KIA 79 (203)
Q Consensus 2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~ 79 (203)
|..+..+++|+.|++++|.++ .+|..+. ++|++|++++|. +....+..+..+++|++|++++|.+.. ..+
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 164 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENE-----ITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSC-----CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCT
T ss_pred HHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCc-----ccccCHhHhcCCccccEEECCCCcCCccCcCh
Confidence 556777789999999999988 5565543 789999999986 777767778889999999999998863 556
Q ss_pred hhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccc---cccCCCCCEEEccCCccccccchhhhccCCCcc
Q 037699 80 TSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT---EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLK 156 (203)
Q Consensus 80 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~ 156 (203)
..+..+++|+++++++|.+..........+....+.+......+ ...+++|+.|++++|.+.+. +...+..+++|+
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~ 243 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLR 243 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCC
T ss_pred hhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCcee-ChhhccCCCCCC
Confidence 77888889999999888876543322222222222222211111 11567788888888877543 333567778888
Q ss_pred EEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 157 YFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 157 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
.|++++|.++ .+|..+..+++|++|++++|.+
T Consensus 244 ~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i 275 (330)
T 1xku_A 244 ELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI 275 (330)
T ss_dssp EEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred EEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence 8888888877 5666677777888888888877
No 51
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=3.6e-20 Score=147.50 Aligned_cols=157 Identities=23% Similarity=0.269 Sum_probs=118.3
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
+++++|++++|.+++..+..+..+++|++|++++|. +.+..|..+..+++|++|++++|.+++..+..++.+++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-----INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-----CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCC-----cCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 589999999999998788899999999999999997 777778889999999999999999997777779999999
Q ss_pred cEEEccCCcCCcc-hhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699 89 RSVFLSHSNMNQE-ISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL 167 (203)
Q Consensus 89 ~~L~l~~n~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~ 167 (203)
++|++++|.+... .+..+. .+++|+.|++++|.+.+..+...+..+++|+.|++++|.+++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~------------------~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFP------------------NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCT------------------TCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred cEEECCCCcccccchhhhhh------------------ccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 9999999988753 222222 456677777777664344444356666777777777777666
Q ss_pred ccCCCCCCCCCccEEEcCCCC
Q 037699 168 NVSPDWIPPFQLKELNLESCN 188 (203)
Q Consensus 168 ~~~~~l~~~~~L~~L~l~~n~ 188 (203)
..+..+..+++|++|++++|.
T Consensus 163 ~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 163 YQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTTTTTCSEEEEEEEECSB
T ss_pred cChhhhhccccCceEecccCc
Confidence 555555554444444444433
No 52
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=4.8e-20 Score=132.12 Aligned_cols=179 Identities=16% Similarity=0.118 Sum_probs=126.0
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccc-cccCccchhhhhccCC
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSF-NNLEGKIATSFGRLCK 87 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~ 87 (203)
++++.|++++|.++...+..+..+++|++|++++|. .+....+..+..+++|++|++++ |.++...+..|..+++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~----~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~ 106 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV----TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL 106 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS----SCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC----CcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence 478888888888886666678888888888888883 03344445677888888888887 8887555567788888
Q ss_pred ccEEEccCCcCCcchhhhhhhcc------ccccCCc-ccccccc---ccCCCCC-EEEccCCccccccchhhhccCCCcc
Q 037699 88 LRSVFLSHSNMNQEISKILNIFS------TCILDGL-EVLEMTE---WQLSSLD-SVNLSNNTLFGSLFEIHFAKLSKLK 156 (203)
Q Consensus 88 L~~L~l~~n~~~~~~~~~~~~~~------~~~~~~l-~~l~~~~---~~~~~L~-~L~l~~n~l~~~~~~~~l~~~~~L~ 156 (203)
|++|++++|.+.... . +..+. ...+.+. ..-.++. ..+++|+ .+++++|.+. .++...+.. ++|+
T Consensus 107 L~~L~l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~-~~L~ 182 (239)
T 2xwt_C 107 LKFLGIFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG-TKLD 182 (239)
T ss_dssp CCEEEEEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT-CEEE
T ss_pred CCEEeCCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC-CCCC
Confidence 888888888776532 2 21111 1111111 1111111 1577899 9999999996 666645555 8899
Q ss_pred EEEccCCc-cccccCCCCCCC-CCccEEEcCCCCCCCCCCchh
Q 037699 157 YFDVSQNS-LTLNVSPDWIPP-FQLKELNLESCNLVGNRFPSW 197 (203)
Q Consensus 157 ~L~l~~n~-~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~p~~ 197 (203)
.|++++|+ ++...+..+..+ ++|++|++++|.+ ..+|..
T Consensus 183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l--~~l~~~ 223 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV--TALPSK 223 (239)
T ss_dssp EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC--CCCCCT
T ss_pred EEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc--ccCChh
Confidence 99999995 886656678888 8999999999999 445543
No 53
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=2.3e-19 Score=146.32 Aligned_cols=93 Identities=23% Similarity=0.205 Sum_probs=47.4
Q ss_pred ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhcc
Q 037699 6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRL 85 (203)
Q Consensus 6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 85 (203)
+.+++|++|++++|.++...+..++.+.+|++|++++|. +.+..+..+..+++|++|++++|.+++..+..+..+
T Consensus 70 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 144 (680)
T 1ziw_A 70 QKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-----IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144 (680)
T ss_dssp HHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-----CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCC
T ss_pred hcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-----cCccChhHccccCCCCEEECCCCcccccCchhhccc
Confidence 334445555555555443333345555555555555554 444444455555555555555555554444445555
Q ss_pred CCccEEEccCCcCCcchh
Q 037699 86 CKLRSVFLSHSNMNQEIS 103 (203)
Q Consensus 86 ~~L~~L~l~~n~~~~~~~ 103 (203)
++|++|++++|.+....+
T Consensus 145 ~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 145 ENLQELLLSNNKIQALKS 162 (680)
T ss_dssp TTCCEEECCSSCCCCBCH
T ss_pred ccCCEEEccCCcccccCH
Confidence 555555555555544433
No 54
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=1.8e-19 Score=125.46 Aligned_cols=151 Identities=17% Similarity=0.251 Sum_probs=127.2
Q ss_pred cCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccC
Q 037699 7 LSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLC 86 (203)
Q Consensus 7 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 86 (203)
.+++|+.|++++|.+. .++ .+..+++|++|++++|. +.. +..+..+++|++|++++|.+++..+..+..++
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~-----~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 112 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH-----ATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLT 112 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCC-----CSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCC-----CCc--chhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence 3458999999999998 556 68899999999999995 333 23688899999999999999977788899999
Q ss_pred CccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCc-cccccchhhhccCCCccEEEccCCcc
Q 037699 87 KLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNT-LFGSLFEIHFAKLSKLKYFDVSQNSL 165 (203)
Q Consensus 87 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~~~~L~~L~l~~n~~ 165 (203)
+|++|++++|.+....+..+. .+++|+.|++++|. + ...+ .+..+++|+.|++++|.+
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~------------------~l~~L~~L~L~~n~~i-~~~~--~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKIN------------------TLPKVNSIDLSYNGAI-TDIM--PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHT------------------TCSSCCEEECCSCTBC-CCCG--GGGGCSSCCEEECTTBCC
T ss_pred CCCEEEecCCccCcHhHHHHh------------------hCCCCCEEEccCCCCc-cccH--hhcCCCCCCEEECCCCCC
Confidence 999999999999876666555 68899999999998 6 3554 578999999999999999
Q ss_pred ccccCCCCCCCCCccEEEcCCCCC
Q 037699 166 TLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 166 ~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
++ ++ .+..+++|++|++++|+|
T Consensus 172 ~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 172 HD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp CC-CT-TGGGCSSCCEEEECBC--
T ss_pred cC-hH-HhccCCCCCEEEeeCccc
Confidence 85 33 678899999999999998
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=141.41 Aligned_cols=182 Identities=22% Similarity=0.176 Sum_probs=105.3
Q ss_pred ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh--h
Q 037699 4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT--S 81 (203)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~ 81 (203)
.+..+++|+.|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|.++ .++. .
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~ 144 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-----LSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSL 144 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-----CSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCS
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-----CCcCCHhHhCCCccCCEEECCCCCCc-ccCchhh
Confidence 45555677777777777765556666677777777777764 44444444566666666666666665 3332 4
Q ss_pred hhccCCccEEEccCCc-CCcchhhhhhhccc---cc----------------cCCccccccccc-----------cCCCC
Q 037699 82 FGRLCKLRSVFLSHSN-MNQEISKILNIFST---CI----------------LDGLEVLEMTEW-----------QLSSL 130 (203)
Q Consensus 82 ~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~---~~----------------~~~l~~l~~~~~-----------~~~~L 130 (203)
+..+++|++|++++|. +....+..+..+.. .. +.+++.+.+... .+++|
T Consensus 145 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L 224 (353)
T 2z80_A 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224 (353)
T ss_dssp CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTE
T ss_pred hccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccc
Confidence 5566666666666652 33332222211100 00 112222222111 35677
Q ss_pred CEEEccCCccccccc------------------------------hhhhccCCCccEEEccCCccccccCCC-CCCCCCc
Q 037699 131 DSVNLSNNTLFGSLF------------------------------EIHFAKLSKLKYFDVSQNSLTLNVSPD-WIPPFQL 179 (203)
Q Consensus 131 ~~L~l~~n~l~~~~~------------------------------~~~l~~~~~L~~L~l~~n~~~~~~~~~-l~~~~~L 179 (203)
+.|++++|.+.+..+ ...+..+++|+.|++++|.++ .++.. +..+++|
T Consensus 225 ~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L 303 (353)
T 2z80_A 225 ECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSL 303 (353)
T ss_dssp EEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred cEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCC
Confidence 777777777653210 113567788888888888888 44444 5778888
Q ss_pred cEEEcCCCCCCCC
Q 037699 180 KELNLESCNLVGN 192 (203)
Q Consensus 180 ~~L~l~~n~l~~~ 192 (203)
++|++++|++.++
T Consensus 304 ~~L~L~~N~~~~~ 316 (353)
T 2z80_A 304 QKIWLHTNPWDCS 316 (353)
T ss_dssp CEEECCSSCBCCC
T ss_pred CEEEeeCCCccCc
Confidence 8888888888543
No 56
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=1.5e-19 Score=142.11 Aligned_cols=181 Identities=23% Similarity=0.248 Sum_probs=105.5
Q ss_pred CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh-------
Q 037699 8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT------- 80 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~------- 80 (203)
+++|+.|++++|.+++..|..+..+++|++|++++|. +.+..| +..+++|++|++++|.+++..+.
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-----l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-----LYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-----CEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-----CCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEE
Confidence 3489999999999997777889999999999999996 555444 78888899999988887632111
Q ss_pred ---------hhhccCCccEEEccCCcCCcchhhhhhhc---cccccCCccccc--cccc--cCCCCCEEEccCCcccccc
Q 037699 81 ---------SFGRLCKLRSVFLSHSNMNQEISKILNIF---STCILDGLEVLE--MTEW--QLSSLDSVNLSNNTLFGSL 144 (203)
Q Consensus 81 ---------~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~~~~~~l~~l~--~~~~--~~~~L~~L~l~~n~l~~~~ 144 (203)
....+++|+.|++++|.+.+..+..+..+ ..+.+.+..... .... .+++|+.|++++|.+.+.
T Consensus 106 L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp CCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred CcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 00123445555555555544433222211 111111111111 1111 345666666666666432
Q ss_pred chhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699 145 FEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201 (203)
Q Consensus 145 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~ 201 (203)
+. ...+++|+.|++++|.+++ +++.+..+++|+.|++++|.+ ..+|.++..+
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l--~~lp~~l~~l 236 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL--VLIEKALRFS 236 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCC--CEECTTCCCC
T ss_pred cc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcC--cccchhhccC
Confidence 21 2346666666666666664 333456666777777777776 2356555443
No 57
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=7.7e-20 Score=152.33 Aligned_cols=181 Identities=22% Similarity=0.251 Sum_probs=122.9
Q ss_pred cCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCccccccccc-ccccccCCCCCCCEEEccccccCccchhhhhcc
Q 037699 7 LSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSG-TFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRL 85 (203)
Q Consensus 7 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 85 (203)
..++++.|++++|.++...+..+..+.+|++|++++|. ... ..|..+..+++|++|++++|.+++..|..|..+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~-----~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY-----TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC-----CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC-----CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 44688999999999887778888999999999999885 333 337778888999999999999887778888899
Q ss_pred CCccEEEccCCcCCcchhhh--hhhccccccCCcccccc----------c--cccCCCCCEEEccCCccccccchhhhcc
Q 037699 86 CKLRSVFLSHSNMNQEISKI--LNIFSTCILDGLEVLEM----------T--EWQLSSLDSVNLSNNTLFGSLFEIHFAK 151 (203)
Q Consensus 86 ~~L~~L~l~~n~~~~~~~~~--~~~~~~~~~~~l~~l~~----------~--~~~~~~L~~L~l~~n~l~~~~~~~~l~~ 151 (203)
++|++|++++|.+.+..+.. +.. +.+++.+++ + ...+++|+.|++++|.+.+..+. .+..
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~-----L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~-~l~~ 170 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRN-----LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH-ELEP 170 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSS-----CSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG-GGHH
T ss_pred cccCEeeCcCCCCCcccccCccccc-----cCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH-Hccc
Confidence 99999999988887643322 221 122222211 1 11566677777777766543333 3444
Q ss_pred C--CCccEEEccCCccccccCCCCCCCCC------ccEEEcCCCCCCCCCCchhhh
Q 037699 152 L--SKLKYFDVSQNSLTLNVSPDWIPPFQ------LKELNLESCNLVGNRFPSWLL 199 (203)
Q Consensus 152 ~--~~L~~L~l~~n~~~~~~~~~l~~~~~------L~~L~l~~n~l~~~~~p~~~~ 199 (203)
+ ++|+.|++++|.+.+..+..+..+++ |++|++++|.+ ....|..+.
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~ 225 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW-TVDITGNFS 225 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCS-STTTTSGGG
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcC-chhHHHHHH
Confidence 4 66777777777766655555554443 88888888887 444555444
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=7.6e-20 Score=136.39 Aligned_cols=183 Identities=22% Similarity=0.250 Sum_probs=108.4
Q ss_pred ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh-----
Q 037699 6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT----- 80 (203)
Q Consensus 6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~----- 80 (203)
...++|+.|++++|.+++..+..+..+++|++|++++|. +.+..+ +..+++|++|++++|.+++..+.
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~ 103 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-----LYETLD--LESLSTLRTLDLNNNYVQELLVGPSIET 103 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-----CEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCE
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-----CCcchh--hhhcCCCCEEECcCCccccccCCCCcCE
Confidence 345689999999999997777888999999999999996 554443 78888899999988887632110
Q ss_pred -----------hhhccCCccEEEccCCcCCcchhhhhhh---ccccccCCcccccc--ccc--cCCCCCEEEccCCcccc
Q 037699 81 -----------SFGRLCKLRSVFLSHSNMNQEISKILNI---FSTCILDGLEVLEM--TEW--QLSSLDSVNLSNNTLFG 142 (203)
Q Consensus 81 -----------~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~~~~~~~~l~~l~~--~~~--~~~~L~~L~l~~n~l~~ 142 (203)
....+++|++|++++|.+....+..+.. +....+.+...... ... .+++|+.|++++|.+.+
T Consensus 104 L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 183 (317)
T 3o53_A 104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (317)
T ss_dssp EECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred EECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc
Confidence 0012334555555555554433322221 11111111111111 111 34667777777766642
Q ss_pred ccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699 143 SLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201 (203)
Q Consensus 143 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~ 201 (203)
.+. ...+++|+.|++++|.+++ +++.+..+++|++|++++|.+ ..+|..+..+
T Consensus 184 -~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l--~~l~~~~~~l 236 (317)
T 3o53_A 184 -VKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL--VLIEKALRFS 236 (317)
T ss_dssp -EEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCC--CEECTTCCCC
T ss_pred -ccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcc--cchhhHhhcC
Confidence 222 2246677777777777764 334466677777777777777 3466655544
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=7.5e-20 Score=136.41 Aligned_cols=187 Identities=18% Similarity=0.176 Sum_probs=137.7
Q ss_pred cccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccc--------------cccccccccCCCCCCCEEE
Q 037699 3 WVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQY--------------LSGTFSSSVGNLTSIQTLD 68 (203)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--------------~~~~~~~~l~~~~~L~~L~ 68 (203)
..+..+++|+.|++++|.+++..+ +..+++|++|++++|....-. +.... ...+++|++|+
T Consensus 52 ~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~---~~~~~~L~~L~ 126 (317)
T 3o53_A 52 ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVS---CSRGQGKKNIY 126 (317)
T ss_dssp HHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEE---ECCCSSCEEEE
T ss_pred HHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcC---ccccCCCCEEE
Confidence 345667789999999998875443 778888888888888521100 11111 12356788899
Q ss_pred ccccccCccchhhhhccCCccEEEccCCcCCcchhhhhh-hccccccCCccccccc--------c-ccCCCCCEEEccCC
Q 037699 69 LSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILN-IFSTCILDGLEVLEMT--------E-WQLSSLDSVNLSNN 138 (203)
Q Consensus 69 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~~~~~l~~l~~~--------~-~~~~~L~~L~l~~n 138 (203)
+++|.++...+..+..+++|++|++++|.+....+..+. . +..++.+.+. . ..+++|+.|++++|
T Consensus 127 l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 127 LANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS-----SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN 201 (317)
T ss_dssp CCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGG-----TTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS
T ss_pred CCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhc-----cCcCCEEECCCCcCcccccccccccCCEEECCCC
Confidence 999998866677888999999999999999876554331 1 2333333322 1 15789999999999
Q ss_pred ccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699 139 TLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK 202 (203)
Q Consensus 139 ~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~ 202 (203)
.+. ..+. .+..+++|+.|++++|.++ .++..+..+++|+.|++++|.+.++.+|.++..++
T Consensus 202 ~l~-~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~ 262 (317)
T 3o53_A 202 KLA-FMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262 (317)
T ss_dssp CCC-EECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCH
T ss_pred cCC-cchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccc
Confidence 996 4555 4788999999999999999 56778889999999999999996567788777653
No 60
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.81 E-value=9.2e-19 Score=145.88 Aligned_cols=97 Identities=27% Similarity=0.238 Sum_probs=73.9
Q ss_pred CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccc--cCCCCCCCEEEccccccCccch
Q 037699 2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSS--VGNLTSIQTLDLSFNNLEGKIA 79 (203)
Q Consensus 2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~ 79 (203)
|..+..+++|++|++++|.+.+..|..+..+.+|++|++++|. +.+..+.. +..+++|++|++++|.+++..+
T Consensus 66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~ 140 (844)
T 3j0a_A 66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG-----LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYL 140 (844)
T ss_dssp TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCC-----CSSCCSTTCCCSSCSSCCEEEEESCCCCCCCC
T ss_pred HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCC-----CCcccccCccccccCCCCEEECCCCccccccc
Confidence 4456777788888888888887778888888888888888886 55544444 7788888888888888875433
Q ss_pred -hhhhccCCccEEEccCCcCCcchh
Q 037699 80 -TSFGRLCKLRSVFLSHSNMNQEIS 103 (203)
Q Consensus 80 -~~~~~l~~L~~L~l~~n~~~~~~~ 103 (203)
..++.+++|++|++++|.+....+
T Consensus 141 ~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 141 HPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred chhHhhCCCCCEEECCCCcCCeeCH
Confidence 568888888888888887765433
No 61
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.6e-18 Score=120.60 Aligned_cols=154 Identities=24% Similarity=0.248 Sum_probs=127.3
Q ss_pred ccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccE
Q 037699 11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRS 90 (203)
Q Consensus 11 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 90 (203)
-+.++++++.++ .+|..+ ..++++|++++|. +....+..+..+++|++|++++|.++...+..+..+++|++
T Consensus 9 ~~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTGI--PAQTTYLDLETNS-----LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSC-----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEecCCCcc-CCCCCC--CCCCcEEEcCCCc-----cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence 357788888877 455444 4689999999997 77766777889999999999999999665666789999999
Q ss_pred EEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccC
Q 037699 91 VFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVS 170 (203)
Q Consensus 91 L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 170 (203)
|++++|.+....+..+. .+++|+.|++++|.+. ..+...+..+++|+.|++++|.+++..+
T Consensus 81 L~Ls~n~l~~~~~~~~~------------------~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 141 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFD------------------KLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPD 141 (208)
T ss_dssp EECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred EECCCCcCCccCHhHhc------------------CccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCH
Confidence 99999998865554443 6789999999999996 4555468899999999999999997666
Q ss_pred CCCCCCCCccEEEcCCCCCCC
Q 037699 171 PDWIPPFQLKELNLESCNLVG 191 (203)
Q Consensus 171 ~~l~~~~~L~~L~l~~n~l~~ 191 (203)
..+..+++|++|++++|.+.+
T Consensus 142 ~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 142 GVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp TTTTTCTTCCEEECCSCCBCC
T ss_pred HHhccCCCccEEEecCCCeec
Confidence 668889999999999999854
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=1.5e-19 Score=142.06 Aligned_cols=185 Identities=18% Similarity=0.201 Sum_probs=140.8
Q ss_pred CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCccccccccccccc----------------ccCCCCCCC
Q 037699 2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSS----------------SVGNLTSIQ 65 (203)
Q Consensus 2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~----------------~l~~~~~L~ 65 (203)
|..+..+++|+.|++++|.+++..+ +..+++|++|++++|. +.+..+. ....+++|+
T Consensus 51 ~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-----l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~ 123 (487)
T 3oja_A 51 AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-----VQELLVGPSIETLHAANNNISRVSCSRGQGKK 123 (487)
T ss_dssp GGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-----EEEEEECTTCCEEECCSSCCCCEEECCCSSCE
T ss_pred HHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-----CCCCCCCCCcCEEECcCCcCCCCCccccCCCC
Confidence 3467777899999999999885544 7888889999888885 3221110 012356788
Q ss_pred EEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhh-hccccccCCccccccc--------c-ccCCCCCEEEc
Q 037699 66 TLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILN-IFSTCILDGLEVLEMT--------E-WQLSSLDSVNL 135 (203)
Q Consensus 66 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~~~~~l~~l~~~--------~-~~~~~L~~L~l 135 (203)
+|++++|.+++..|..++.+++|++|++++|.+.+..+..+. . +.+++.+.+. . ..+++|+.|++
T Consensus 124 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~-----l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L 198 (487)
T 3oja_A 124 NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS-----SDTLEHLNLQYNFIYDVKGQVVFAKLKTLDL 198 (487)
T ss_dssp EEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGG-----TTTCCEEECTTSCCCEEECCCCCTTCCEEEC
T ss_pred EEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhh-----CCcccEEecCCCccccccccccCCCCCEEEC
Confidence 999999999877788899999999999999999886655432 1 2333333322 1 25789999999
Q ss_pred cCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699 136 SNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201 (203)
Q Consensus 136 ~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~ 201 (203)
++|.+++ .+. .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.++.+|.++..+
T Consensus 199 s~N~l~~-~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 199 SSNKLAF-MGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp CSSCCCE-ECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred CCCCCCC-CCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 9999974 555 47889999999999999995 677788899999999999999656777777654
No 63
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=1.2e-19 Score=137.69 Aligned_cols=159 Identities=26% Similarity=0.195 Sum_probs=88.5
Q ss_pred cccEEecCCCccCCCCCcccc-CCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLG-NLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
.++.|++++|.++...+..+. .+.+|++|++++|. +....+..+..+++|++|++++|.++...+..|..+++|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-----i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-----LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL 114 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-----CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC
Confidence 456666666666644444454 56666666666664 555445556666666666666666654444455666666
Q ss_pred cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhh---ccCCCccEEEccCCcc
Q 037699 89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHF---AKLSKLKYFDVSQNSL 165 (203)
Q Consensus 89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l---~~~~~L~~L~l~~n~~ 165 (203)
++|++++|.+....+..+. .+++|+.|++++|.+. .++...+ ..+++|+.|++++|.+
T Consensus 115 ~~L~L~~N~i~~~~~~~~~------------------~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFE------------------DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CEEECCSSCCCEECTTTTT------------------TCTTCCEEECCSSCCC-SCCGGGTC----CTTCCEEECCSSCC
T ss_pred CEEECCCCcccEECHHHhC------------------CcccCCEEECCCCcCC-eeCHHHhcCcccCCcCCEEECCCCCC
Confidence 6666666666544443333 4566666666666664 3443333 3466666666666666
Q ss_pred ccccCCCCCCCCC--ccEEEcCCCCCCCC
Q 037699 166 TLNVSPDWIPPFQ--LKELNLESCNLVGN 192 (203)
Q Consensus 166 ~~~~~~~l~~~~~--L~~L~l~~n~l~~~ 192 (203)
+...+..+..++. ++.|++.+|.+.++
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CccCHHHhhhccHhhcceEEecCCCccCC
Confidence 6433233334443 35666666666443
No 64
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=7e-19 Score=131.94 Aligned_cols=186 Identities=20% Similarity=0.182 Sum_probs=124.2
Q ss_pred CcccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCc--cch
Q 037699 2 PWVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEG--KIA 79 (203)
Q Consensus 2 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~ 79 (203)
|..+..+++|+.|++++|.++ .+|..+. ++|++|++++|. +....+..+..+++|++|++++|.++. ..+
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~-----i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 166 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNR-----IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSC-----CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCT
T ss_pred HhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCc-----cCccCHhHhCCCccCCEEECCCCccccCCCCc
Confidence 455666778888888888887 4554443 678888888886 555555567778888888888877752 334
Q ss_pred hhhhcc--------------------CCccEEEccCCcCCcchhhhhhhccccccCCccccccc--------c---ccCC
Q 037699 80 TSFGRL--------------------CKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT--------E---WQLS 128 (203)
Q Consensus 80 ~~~~~l--------------------~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~--------~---~~~~ 128 (203)
..+..+ ++|++|++++|.+....+..+.. +..++.+.+. . ..++
T Consensus 167 ~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~ 241 (332)
T 2ft3_A 167 GAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLR-----YSKLYRLGLGHNQIRMIENGSLSFLP 241 (332)
T ss_dssp TSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTT-----CTTCSCCBCCSSCCCCCCTTGGGGCT
T ss_pred ccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcC-----CCCCCEEECCCCcCCcCChhHhhCCC
Confidence 444443 34555555555554443332221 2233333322 1 2678
Q ss_pred CCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCC------CCCccEEEcCCCCCCC-CCCchhhhcc
Q 037699 129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIP------PFQLKELNLESCNLVG-NRFPSWLLSQ 201 (203)
Q Consensus 129 ~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~------~~~L~~L~l~~n~l~~-~~~p~~~~~~ 201 (203)
+|+.|++++|.+. .++. .+..+++|+.|++++|.++...+..+.. .++|+.|++.+|.+.. +..|..+..+
T Consensus 242 ~L~~L~L~~N~l~-~lp~-~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 242 TLRELHLDNNKLS-RVPA-GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp TCCEEECCSSCCC-BCCT-TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred CCCEEECCCCcCe-ecCh-hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence 9999999999996 6666 5889999999999999999765555544 3579999999999842 3445555544
Q ss_pred c
Q 037699 202 K 202 (203)
Q Consensus 202 ~ 202 (203)
+
T Consensus 320 ~ 320 (332)
T 2ft3_A 320 T 320 (332)
T ss_dssp C
T ss_pred c
Confidence 3
No 65
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=134.95 Aligned_cols=179 Identities=18% Similarity=0.100 Sum_probs=125.4
Q ss_pred CcccEEecCCCccCCCCCccc--cCCCCccEEeCCCCcccccccccccc----cccCCCCCCCEEEccccccCccchhhh
Q 037699 9 DHLVFLDLSLNNFQGPIPRGL--GNLTSLRYLDLSANISILQYLSGTFS----SSVGNLTSIQTLDLSFNNLEGKIATSF 82 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~~~~~ 82 (203)
++|+.|++++|.+.+..|..+ ..+++|++|++++|. +....+ ..+..+++|++|++++|.+++..+..+
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-----i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 165 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-----WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQV 165 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-----CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-----ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHh
Confidence 368999999999988888777 889999999999986 554333 334568889999999999987777788
Q ss_pred hccCCccEEEccCCcCCcchhhhhhhccccccCCcccccccc--------------ccCCCCCEEEccCCccccccchhh
Q 037699 83 GRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTE--------------WQLSSLDSVNLSNNTLFGSLFEIH 148 (203)
Q Consensus 83 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~--------------~~~~~L~~L~l~~n~l~~~~~~~~ 148 (203)
..+++|++|++++|.+.+........ ....+++++.+.+.. ..+++|+.|++++|.+.+..|. .
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~-~ 243 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAAL-CPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNP-S 243 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTS-CTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCS-C
T ss_pred ccCCCCCEEECCCCCCccchhhhHHH-hhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchh-h
Confidence 88999999999999875421100000 000122333333221 1458899999999999765454 3
Q ss_pred hccC---CCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchh
Q 037699 149 FAKL---SKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSW 197 (203)
Q Consensus 149 l~~~---~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~ 197 (203)
+..+ ++|+.|++++|.++ .+|..+. ++|++|++++|.+++-..+..
T Consensus 244 ~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~ 292 (310)
T 4glp_A 244 APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQPDE 292 (310)
T ss_dssp CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCCTTS
T ss_pred HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCchhhh
Confidence 4444 68999999999998 5666553 689999999999954333333
No 66
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=2.3e-19 Score=133.33 Aligned_cols=175 Identities=17% Similarity=0.102 Sum_probs=113.9
Q ss_pred ccCCcccEEecCCCccCCCCC----ccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCcc--ch
Q 037699 6 GLSDHLVFLDLSLNNFQGPIP----RGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGK--IA 79 (203)
Q Consensus 6 ~~~~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~ 79 (203)
...++|++|++++|.+++..+ ..+..+++|++|++++|. +....+..+..+++|++|++++|.+.+. .+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 188 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-----SPAFSCEQVRAFPALTSLDLSDNPGLGERGLM 188 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-----SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHH
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-----cchhhHHHhccCCCCCEEECCCCCCccchhhh
Confidence 455677888888887775433 233457778888888776 6666667777777888888888776532 21
Q ss_pred --hhhhccCCccEEEccCCcCCcchhh---hhh---hccccccCCcccccc-cc--cc---CCCCCEEEccCCccccccc
Q 037699 80 --TSFGRLCKLRSVFLSHSNMNQEISK---ILN---IFSTCILDGLEVLEM-TE--WQ---LSSLDSVNLSNNTLFGSLF 145 (203)
Q Consensus 80 --~~~~~l~~L~~L~l~~n~~~~~~~~---~~~---~~~~~~~~~l~~l~~-~~--~~---~~~L~~L~l~~n~l~~~~~ 145 (203)
..+..+++|++|++++|.+...... .+. .+....+.+...... |. .. +++|+.|++++|.++ .++
T Consensus 189 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp 267 (310)
T 4glp_A 189 AALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVP 267 (310)
T ss_dssp TTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCC
T ss_pred HHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chh
Confidence 2235677777778877777533221 111 111111222111111 11 12 369999999999996 666
Q ss_pred hhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCC
Q 037699 146 EIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVG 191 (203)
Q Consensus 146 ~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 191 (203)
. .+ .++|+.|++++|++++. + .+..+++|++|++++|++++
T Consensus 268 ~-~~--~~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 268 K-GL--PAKLRVLDLSSNRLNRA-P-QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp S-CC--CSCCSCEECCSCCCCSC-C-CTTSCCCCSCEECSSTTTSC
T ss_pred h-hh--cCCCCEEECCCCcCCCC-c-hhhhCCCccEEECcCCCCCC
Confidence 5 23 37999999999999963 2 36778999999999999944
No 67
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=2.7e-19 Score=144.40 Aligned_cols=159 Identities=21% Similarity=0.207 Sum_probs=107.8
Q ss_pred CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699 8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK 87 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 87 (203)
..+++.|++++|.++...+..|.++++|++|++++|. +....+..|.++++|++|++++|.++...+..|..+++
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-----i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-----CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 3467888888888876666777888888888888886 66666667778888888888888877544556777888
Q ss_pred ccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699 88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL 167 (203)
Q Consensus 88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~ 167 (203)
|++|++++|.+....+..+. .+++|+.|++++|.+........+..+++|+.|++++|.+++
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~------------------~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIG------------------HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCT------------------TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCEEECCCCcCCCCChhhhh------------------cCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 88888888877654443333 567777777777777532222256677777778877777765
Q ss_pred ccCCCCCCCCC----ccEEEcCCCCC
Q 037699 168 NVSPDWIPPFQ----LKELNLESCNL 189 (203)
Q Consensus 168 ~~~~~l~~~~~----L~~L~l~~n~l 189 (203)
..+..+..+.+ ...++++.|.+
T Consensus 188 ~~~~~l~~L~~l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 188 IYCTDLRVLHQMPLLNLSLDLSLNPM 213 (635)
T ss_dssp ECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred cccccccchhhhhhhhhhhhcccCcc
Confidence 44444433222 23566666665
No 68
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=143.74 Aligned_cols=180 Identities=24% Similarity=0.189 Sum_probs=121.9
Q ss_pred cCCcccEEecCCCccCCCC--CccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccch-hhhh
Q 037699 7 LSDHLVFLDLSLNNFQGPI--PRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIA-TSFG 83 (203)
Q Consensus 7 ~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~ 83 (203)
.+++|+.|++++|.+++.. +..+..+++|++|++++|. +....+. +..+++|++|++++|.+.+..+ ..+.
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-----l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-----VITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-----EEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-----ccccccc-ccccCCCCEEEccCCccccccchhhhh
Confidence 4557888888888776432 5566677777777777774 4443333 6677777777777777764443 3566
Q ss_pred ccCCccEEEccCCcCCcchhhhhhhc---cccccCCcccc--cccc--ccCCCCCEEEccCCccccccchhhhccCCCcc
Q 037699 84 RLCKLRSVFLSHSNMNQEISKILNIF---STCILDGLEVL--EMTE--WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLK 156 (203)
Q Consensus 84 ~l~~L~~L~l~~n~~~~~~~~~~~~~---~~~~~~~l~~l--~~~~--~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~ 156 (203)
.+++|++|++++|.+....+..+..+ ....+.+.... .++. ..+++|+.|++++|.+++..+. .+..+++|+
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~ 497 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT-AFNSLSSLQ 497 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT-TTTTCTTCC
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChh-hhhcccCCC
Confidence 77777777777776665544433221 11111111111 1111 1678999999999999754454 788899999
Q ss_pred EEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCC
Q 037699 157 YFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNR 193 (203)
Q Consensus 157 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 193 (203)
.|++++|.+++..+..+..+++|++|++++|+++++.
T Consensus 498 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 498 VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 9999999999777777888999999999999996653
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.80 E-value=9.2e-19 Score=138.63 Aligned_cols=174 Identities=21% Similarity=0.227 Sum_probs=114.1
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCc--cchhhhhccCC
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEG--KIATSFGRLCK 87 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~ 87 (203)
+++.|++++|.+.... ....+++|++|++++|. +.+..|..+..+++|++|++++|.+++ .+|..+..+++
T Consensus 303 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~ 375 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNL-----LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375 (520)
T ss_dssp CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSC-----CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT
T ss_pred ceeEEEcCCCcccccc--chhhCCcccEEEeECCc-----cChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC
Confidence 5666777776655321 12456667777777765 555566666666677777777776664 44455666677
Q ss_pred ccEEEccCCcCCcchhh-hhhhccccccCCccccccccc--------cC-CCCCEEEccCCccccccchhhhccCCCccE
Q 037699 88 LRSVFLSHSNMNQEISK-ILNIFSTCILDGLEVLEMTEW--------QL-SSLDSVNLSNNTLFGSLFEIHFAKLSKLKY 157 (203)
Q Consensus 88 L~~L~l~~n~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~--------~~-~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~ 157 (203)
|++|++++|.+.+..+. .+.. +..++.+.+... .+ ++|+.|++++|.+. .++. .+..+++|+.
T Consensus 376 L~~L~Ls~N~l~~~l~~~~~~~-----l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~-~~~~l~~L~~ 448 (520)
T 2z7x_B 376 LQQLDISQNSVSYDEKKGDCSW-----TKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPK-QVVKLEALQE 448 (520)
T ss_dssp CCEEECCSSCCBCCGGGCSCCC-----CTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCG-GGGGCTTCCE
T ss_pred CCEEECCCCcCCcccccchhcc-----CccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccch-hhhcCCCCCE
Confidence 77777777666652222 1211 222333322211 12 68999999999996 6776 4559999999
Q ss_pred EEccCCccccccCCC-CCCCCCccEEEcCCCCCCCCCCchhh
Q 037699 158 FDVSQNSLTLNVSPD-WIPPFQLKELNLESCNLVGNRFPSWL 198 (203)
Q Consensus 158 L~l~~n~~~~~~~~~-l~~~~~L~~L~l~~n~l~~~~~p~~~ 198 (203)
|++++|.++. ++.. +..+++|++|++++|+++++.-..|+
T Consensus 449 L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 449 LNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp EECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred EECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 9999999994 5554 88899999999999999776543444
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=3.8e-18 Score=126.71 Aligned_cols=159 Identities=25% Similarity=0.332 Sum_probs=74.5
Q ss_pred CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699 8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK 87 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 87 (203)
+++|+.|++++|.+++ .+. +..+++|++|++++|. +... ..+..+++|++|++++|.+++ ++. +..+++
T Consensus 62 l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~-----l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~ 130 (308)
T 1h6u_A 62 LNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNP-----LKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSN 130 (308)
T ss_dssp CTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCC-----CSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTT
T ss_pred cCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCc-----CCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCC
Confidence 3455555555555552 222 5555555555555553 2221 234555555555555555552 222 555555
Q ss_pred ccEEEccCCcCCcchhhhhhhccccccCCcccccc--------c-cccCCCCCEEEccCCccccccchhhhccCCCccEE
Q 037699 88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM--------T-EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYF 158 (203)
Q Consensus 88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~--------~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L 158 (203)
|++|++++|.+....+ +.. +..++.+.+ + ...+++|+.|++++|.+.+ .+. +..+++|+.|
T Consensus 131 L~~L~l~~n~l~~~~~--l~~-----l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L 200 (308)
T 1h6u_A 131 LQVLYLDLNQITNISP--LAG-----LTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISP--LASLPNLIEV 200 (308)
T ss_dssp CCEEECCSSCCCCCGG--GGG-----CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG--GGGCTTCCEE
T ss_pred CCEEECCCCccCcCcc--ccC-----CCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCc-Chh--hcCCCCCCEE
Confidence 6666665555544322 110 111211111 1 1134455555555555532 221 4455555555
Q ss_pred EccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 159 DVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 159 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
++++|.+++.. .+..+++|+.|++++|.+
T Consensus 201 ~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 201 HLKNNQISDVS--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp ECTTSCCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred EccCCccCccc--cccCCCCCCEEEccCCee
Confidence 55555555322 144555555555555555
No 71
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=3.1e-18 Score=139.61 Aligned_cols=182 Identities=24% Similarity=0.215 Sum_probs=109.4
Q ss_pred CcccccCCcccEEecCCCccCCCCC-ccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccC--ccc
Q 037699 2 PWVFGLSDHLVFLDLSLNNFQGPIP-RGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLE--GKI 78 (203)
Q Consensus 2 p~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~ 78 (203)
|..+..+++|+.|++++|.+.+.++ ..+..+++|++|++++|. +....+..+..+++|+.|++++|.+. +..
T Consensus 398 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~-----l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 472 (680)
T 1ziw_A 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNK-----YLQLTRNSFALVPSLQRLMLRRVALKNVDSS 472 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCS-----EEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred hhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCC-----cceeChhhhhcCcccccchhccccccccccC
Confidence 4456667788888888888875544 677788888888888886 55555555556666666666666554 344
Q ss_pred hhhhhccCCccEEEccCCcCCcchhhhhhhc---cccccCCcccccc--------c---cccCCCCCEEEccCCcccccc
Q 037699 79 ATSFGRLCKLRSVFLSHSNMNQEISKILNIF---STCILDGLEVLEM--------T---EWQLSSLDSVNLSNNTLFGSL 144 (203)
Q Consensus 79 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---~~~~~~~l~~l~~--------~---~~~~~~L~~L~l~~n~l~~~~ 144 (203)
|..+..+++|++|++++|.+....+..+..+ ....+.+.....+ + ...+++|+.|++++|.+. .+
T Consensus 473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i 551 (680)
T 1ziw_A 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EI 551 (680)
T ss_dssp SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CC
T ss_pred CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CC
Confidence 5555666666666666666554443332211 1111111111000 0 114567777777777774 55
Q ss_pred chhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 145 FEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 145 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
+...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+
T Consensus 552 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l 596 (680)
T 1ziw_A 552 PVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596 (680)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred CHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence 544566777777777777777754444556667777777777776
No 72
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.79 E-value=6.4e-19 Score=140.83 Aligned_cols=158 Identities=22% Similarity=0.241 Sum_probs=107.0
Q ss_pred CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699 8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK 87 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 87 (203)
.++++.|++++|.+++..+..+..+++|++|++++|. +.+..+..+..+++|++|++++|.++...+..|..+++
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-----i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC-----CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCc-----CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 3578999999999987777788999999999999996 77777778889999999999999998666678899999
Q ss_pred ccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCcccc-ccchhhhccCCCccEEEccCCccc
Q 037699 88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFG-SLFEIHFAKLSKLKYFDVSQNSLT 166 (203)
Q Consensus 88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~-~~~~~~l~~~~~L~~L~l~~n~~~ 166 (203)
|++|++++|.+....+..+. .+++|++|++++|.+.+ ..|. .++.+++|+.|++++|.++
T Consensus 102 L~~L~L~~n~l~~l~~~~~~------------------~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIG------------------HLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCT------------------TCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECTTSCCC
T ss_pred cccccccccccccCCCcccc------------------ccccccEEecCCCccceecChh-hhcccCCCCEEeCcCCccc
Confidence 99999999988764432222 34455555555555432 1222 3445555555555555554
Q ss_pred cccCCCCCCCCCc----cEEEcCCCCC
Q 037699 167 LNVSPDWIPPFQL----KELNLESCNL 189 (203)
Q Consensus 167 ~~~~~~l~~~~~L----~~L~l~~n~l 189 (203)
+..+..+..+.+| +.+++++|.+
T Consensus 163 ~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 163 SIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp EECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred eecHHHccchhccchhhhhcccCCCCc
Confidence 3333333333333 4444444444
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=6.7e-19 Score=126.18 Aligned_cols=153 Identities=23% Similarity=0.234 Sum_probs=113.4
Q ss_pred cCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccc-cCccchhhhhccCCccEEEccC-CcC
Q 037699 21 FQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNN-LEGKIATSFGRLCKLRSVFLSH-SNM 98 (203)
Q Consensus 21 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-n~~ 98 (203)
++ .+|. + ..++++|++++|. +....+..+..+++|++|++++|. ++...+..|..+++|++|++++ |.+
T Consensus 23 l~-~ip~-~--~~~l~~L~l~~n~-----l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l 93 (239)
T 2xwt_C 23 IQ-RIPS-L--PPSTQTLKLIETH-----LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL 93 (239)
T ss_dssp CS-SCCC-C--CTTCCEEEEESCC-----CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC
T ss_pred cc-ccCC-C--CCcccEEEEeCCc-----ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe
Confidence 44 4555 3 3489999999997 777777789999999999999997 8755556789999999999998 888
Q ss_pred CcchhhhhhhccccccCCcccccc--------cc-ccCCCCC---EEEccCC-ccccccchhhhccCCCcc-EEEccCCc
Q 037699 99 NQEISKILNIFSTCILDGLEVLEM--------TE-WQLSSLD---SVNLSNN-TLFGSLFEIHFAKLSKLK-YFDVSQNS 164 (203)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~l~~l~~--------~~-~~~~~L~---~L~l~~n-~l~~~~~~~~l~~~~~L~-~L~l~~n~ 164 (203)
....+..+.. +.+++.+.+ +. ..+++|+ .|++++| .+. .++...+..+++|+ .|++++|.
T Consensus 94 ~~i~~~~f~~-----l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 94 TYIDPDALKE-----LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp CEECTTSEEC-----CTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBSSEEEEECCSCC
T ss_pred eEcCHHHhCC-----CCCCCEEeCCCCCCccccccccccccccccEEECCCCcchh-hcCcccccchhcceeEEEcCCCC
Confidence 8765554432 233333332 22 2455666 9999999 775 55555688899999 99999999
Q ss_pred cccccCCCCCCCCCccEEEcCCCC-C
Q 037699 165 LTLNVSPDWIPPFQLKELNLESCN-L 189 (203)
Q Consensus 165 ~~~~~~~~l~~~~~L~~L~l~~n~-l 189 (203)
++ .++......++|++|++++|+ +
T Consensus 168 l~-~i~~~~~~~~~L~~L~L~~n~~l 192 (239)
T 2xwt_C 168 FT-SVQGYAFNGTKLDAVYLNKNKYL 192 (239)
T ss_dssp CC-EECTTTTTTCEEEEEECTTCTTC
T ss_pred Cc-ccCHhhcCCCCCCEEEcCCCCCc
Confidence 88 444443334789999999995 7
No 74
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.9e-18 Score=136.79 Aligned_cols=181 Identities=19% Similarity=0.274 Sum_probs=126.0
Q ss_pred CcccEEecCCCccCCCCCccc-----cCCCCccEEeCCCCcccccccccccc-------------------------cc-
Q 037699 9 DHLVFLDLSLNNFQGPIPRGL-----GNLTSLRYLDLSANISILQYLSGTFS-------------------------SS- 57 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~-----~~l~~L~~L~l~~~~~~~~~~~~~~~-------------------------~~- 57 (203)
++|+.|++++|.+++.+|..+ ..+.+|+.+++++|. + .+| ..
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~-----~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 319 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV-----F--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC-----C--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC
T ss_pred CcccEEEeecccccCccccchhhcccccCceeEeccccccc-----e--ecchhhhhcccccCceeEEEcCCCccccccc
Confidence 378889999998887788777 777777777777664 2 112 00
Q ss_pred cCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcc--hhhhhhhc---cccccCCccccc-ccc---ccCC
Q 037699 58 VGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQE--ISKILNIF---STCILDGLEVLE-MTE---WQLS 128 (203)
Q Consensus 58 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~---~~~~~~~l~~l~-~~~---~~~~ 128 (203)
...+++|++|++++|.+++..|..+..+++|++|++++|.+.+. .+..+..+ ....+.+..... ++. ..++
T Consensus 320 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 15788999999999999988899999999999999999999863 33333321 111122222211 221 1457
Q ss_pred CCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchh-hhccc
Q 037699 129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSW-LLSQK 202 (203)
Q Consensus 129 ~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~-~~~~~ 202 (203)
+|+.|++++|.+++..+. .+ .++|+.|++++|.++ .+|..+..+++|++|++++|.+ ..+|.. +..++
T Consensus 400 ~L~~L~Ls~N~l~~~~~~-~l--~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l--~~l~~~~~~~l~ 468 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFR-CL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL--KSVPDGIFDRLT 468 (520)
T ss_dssp TCCEEECCSSCCCGGGGG-SC--CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC--CCCCTTTTTTCT
T ss_pred cCCEEECcCCCCCcchhh-hh--cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC--CccCHHHhccCC
Confidence 788888888888654443 22 168888888888888 5666666888899999999988 357765 54443
No 75
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3.9e-18 Score=120.70 Aligned_cols=135 Identities=21% Similarity=0.284 Sum_probs=118.2
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
++++.|++++|.++...+..+..+++|++|++++|. +....|..+..+++|++|++++|.++...+..|..+++|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-----i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-----ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-----CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-----CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC
Confidence 589999999999997777789999999999999997 778888999999999999999999995555567899999
Q ss_pred cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699 89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL 167 (203)
Q Consensus 89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~ 167 (203)
++|++++|.+....+..+. .+++|+.|++++|.+. ..+...+..+++|+.|++++|.+..
T Consensus 107 ~~L~L~~N~l~~~~~~~~~------------------~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDAFQ------------------DLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CEEECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCCCCCEeCHHHcC------------------CCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9999999999877665554 6789999999999996 4454478889999999999999864
No 76
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.4e-17 Score=122.74 Aligned_cols=159 Identities=24% Similarity=0.267 Sum_probs=95.7
Q ss_pred CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699 8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK 87 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 87 (203)
+++|+.|++++|.+.. ++ .+..+++|++|++++|. +.+..+ +..+++|++|++++|.+++ + ..+..+++
T Consensus 45 l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~-----l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~ 113 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNK-----LTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKK 113 (291)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-----CCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTT
T ss_pred cCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCc-----cCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCC
Confidence 3467788888887763 33 46777888888888875 444333 6777788888888887763 3 33777778
Q ss_pred ccEEEccCCcCCcchhhhhhhccccccCCccccccc--------c-ccCCCCCEEEccCCccccccchhhhccCCCccEE
Q 037699 88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT--------E-WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYF 158 (203)
Q Consensus 88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~--------~-~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L 158 (203)
|++|++++|.+... + .+.. +..++.+.+. . ..+++|+.|++++|.+.+ .+. +..+++|+.|
T Consensus 114 L~~L~L~~n~i~~~-~-~l~~-----l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~~L 183 (291)
T 1h6t_A 114 LKSLSLEHNGISDI-N-GLVH-----LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNL 183 (291)
T ss_dssp CCEEECTTSCCCCC-G-GGGG-----CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCCEE
T ss_pred CCEEECCCCcCCCC-h-hhcC-----CCCCCEEEccCCcCCcchhhccCCCCCEEEccCCcccc-chh--hcCCCccCEE
Confidence 88888888777653 1 1110 1111111111 1 145666666666666643 222 5566666666
Q ss_pred EccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 159 DVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 159 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
++++|.++.. +.+..+++|+.|++++|++
T Consensus 184 ~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 184 YLSKNHISDL--RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp ECCSSCCCBC--GGGTTCTTCSEEEEEEEEE
T ss_pred ECCCCcCCCC--hhhccCCCCCEEECcCCcc
Confidence 6666666542 2355666666666666666
No 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.78 E-value=3.7e-18 Score=136.43 Aligned_cols=152 Identities=20% Similarity=0.257 Sum_probs=97.8
Q ss_pred cCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCc--cchhhhhccCCccEEEccCCcCCcchh-hhh
Q 037699 30 GNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEG--KIATSFGRLCKLRSVFLSHSNMNQEIS-KIL 106 (203)
Q Consensus 30 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~ 106 (203)
..+++|++|++++|. +.+..|..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+....+ ..+
T Consensus 350 ~~l~~L~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 350 PSPSSFTFLNFTQNV-----FTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp SSCCCCCEEECCSSC-----CCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred cCCCCceEEECCCCc-----cccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 456667777777765 555566666667777777777776663 334556666777777777776654222 111
Q ss_pred hhccccccCCccccccccc--------cC-CCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCC-CCCC
Q 037699 107 NIFSTCILDGLEVLEMTEW--------QL-SSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPD-WIPP 176 (203)
Q Consensus 107 ~~~~~~~~~~l~~l~~~~~--------~~-~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-l~~~ 176 (203)
.. +..++.+.+... .+ ++|+.|++++|.+. .++.. +..+++|+.|++++|+++ .++.. +..+
T Consensus 425 ~~-----l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~-~ip~~-~~~l~~L~~L~L~~N~l~-~l~~~~~~~l 496 (562)
T 3a79_B 425 AW-----AESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKD-VTHLQALQELNVASNQLK-SVPDGVFDRL 496 (562)
T ss_dssp CC-----CTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCC-CCCTT-TTSSCCCSEEECCSSCCC-CCCTTSTTTC
T ss_pred cC-----cccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCc-ccChh-hcCCCCCCEEECCCCCCC-CCCHHHHhcC
Confidence 11 122232222211 22 58889999998885 66663 448888999999999888 45544 7788
Q ss_pred CCccEEEcCCCCCCCCCC
Q 037699 177 FQLKELNLESCNLVGNRF 194 (203)
Q Consensus 177 ~~L~~L~l~~n~l~~~~~ 194 (203)
++|+.|++++|++.++.-
T Consensus 497 ~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 497 TSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTCCCEECCSCCBCCCHH
T ss_pred CCCCEEEecCCCcCCCcc
Confidence 889999999998866543
No 78
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=4.5e-19 Score=133.04 Aligned_cols=168 Identities=17% Similarity=0.206 Sum_probs=89.2
Q ss_pred CcccEEecCCCccCCC-CCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEcccc-ccCc-cchhhhhcc
Q 037699 9 DHLVFLDLSLNNFQGP-IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFN-NLEG-KIATSFGRL 85 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~-~~~~~~~~l 85 (203)
++|+.|++++|.+++. ++..+..+++|++|++++|. +.+..+..+..+++|++|++++| .+++ .++..+..+
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~-----l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~ 167 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-----LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 167 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-----CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcc-----cCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcC
Confidence 4666666666665533 45555666666666666664 55455555666666666666666 4543 245556666
Q ss_pred CCccEEEccCC-cCCcc-hhhhhhhccccccC-Cccccccc------------c--ccCCCCCEEEccCCc-cccccchh
Q 037699 86 CKLRSVFLSHS-NMNQE-ISKILNIFSTCILD-GLEVLEMT------------E--WQLSSLDSVNLSNNT-LFGSLFEI 147 (203)
Q Consensus 86 ~~L~~L~l~~n-~~~~~-~~~~~~~~~~~~~~-~l~~l~~~------------~--~~~~~L~~L~l~~n~-l~~~~~~~ 147 (203)
++|++|++++| .+... .+..+.. ++ +++.+.+. . ..+++|+.|++++|. +++..+.
T Consensus 168 ~~L~~L~l~~~~~l~~~~~~~~~~~-----l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~- 241 (336)
T 2ast_B 168 SRLDELNLSWCFDFTEKHVQVAVAH-----VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ- 241 (336)
T ss_dssp TTCCEEECCCCTTCCHHHHHHHHHH-----SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG-
T ss_pred CCCCEEcCCCCCCcChHHHHHHHHh-----cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH-
Confidence 66666666666 55542 2222221 11 22222111 0 145566666666665 4333333
Q ss_pred hhccCCCccEEEccCCc-cccccCCCCCCCCCccEEEcCCC
Q 037699 148 HFAKLSKLKYFDVSQNS-LTLNVSPDWIPPFQLKELNLESC 187 (203)
Q Consensus 148 ~l~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~n 187 (203)
.+..+++|+.|++++|. ++......+..+++|++|++++|
T Consensus 242 ~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 242 EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 45556666666666663 22222223455666666666666
No 79
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=7.5e-18 Score=127.73 Aligned_cols=156 Identities=25% Similarity=0.245 Sum_probs=127.3
Q ss_pred ccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccC-CCCCCCEEEccccccCccchhhhhccCCcc
Q 037699 11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVG-NLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89 (203)
Q Consensus 11 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (203)
-+.++++++.++ .+|..+. ..++.|++++|. +....+..+. .+++|++|++++|.++...+..|..+++|+
T Consensus 20 ~~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~-----l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 20 SNILSCSKQQLP-NVPQSLP--SYTALLDLSHNN-----LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp TTEEECCSSCCS-SCCSSCC--TTCSEEECCSSC-----CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCCEEECCCCC-----CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 467899999988 5666553 458999999997 7777777777 899999999999999966677899999999
Q ss_pred EEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccccc
Q 037699 90 SVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNV 169 (203)
Q Consensus 90 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 169 (203)
+|++++|.+....+..+. .+++|+.|++++|.+.+ .....+..+++|+.|++++|.++...
T Consensus 92 ~L~Ls~N~l~~~~~~~~~------------------~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~L~~N~l~~l~ 152 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFS------------------DLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRFP 152 (361)
T ss_dssp EEECCSSCCCEECTTTTT------------------TCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCSCC
T ss_pred EEECCCCcCCcCCHHHhC------------------CCcCCCEEECCCCcccE-ECHHHhCCcccCCEEECCCCcCCeeC
Confidence 999999999876555544 67899999999999964 44447889999999999999999643
Q ss_pred CCCC---CCCCCccEEEcCCCCCCCCCCc
Q 037699 170 SPDW---IPPFQLKELNLESCNLVGNRFP 195 (203)
Q Consensus 170 ~~~l---~~~~~L~~L~l~~n~l~~~~~p 195 (203)
...+ ..+++|+.|+|++|.| ..+|
T Consensus 153 ~~~~~~~~~l~~L~~L~L~~N~l--~~l~ 179 (361)
T 2xot_A 153 VELIKDGNKLPKLMLLDLSSNKL--KKLP 179 (361)
T ss_dssp GGGTC----CTTCCEEECCSSCC--CCCC
T ss_pred HHHhcCcccCCcCCEEECCCCCC--CccC
Confidence 3334 5688999999999999 4455
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.77 E-value=2.7e-17 Score=122.14 Aligned_cols=169 Identities=23% Similarity=0.278 Sum_probs=127.7
Q ss_pred CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699 8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK 87 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 87 (203)
+++|+.|++++|.++. ++ .+..+++|++|++++|. +....+ +..+++|++|++++|.+++ .+ .+..+++
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~-----i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~ 108 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQ-----ITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQS 108 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSC-----CCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTT
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCc-----CCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCC
Confidence 4589999999999884 44 68889999999999996 555443 8899999999999999984 33 6889999
Q ss_pred ccEEEccCCcCCcchhhhhhhccccccCCccccccc---------cccCCCCCEEEccCCccccccchhhhccCCCccEE
Q 037699 88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT---------EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYF 158 (203)
Q Consensus 88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L 158 (203)
|++|++++|.+....+ +.. +..++.+.+. ...+++|+.|++++|.+.+ .+. +..+++|+.|
T Consensus 109 L~~L~l~~n~l~~~~~--l~~-----l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L 178 (308)
T 1h6u_A 109 IKTLDLTSTQITDVTP--LAG-----LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTL 178 (308)
T ss_dssp CCEEECTTSCCCCCGG--GTT-----CTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEE
T ss_pred CCEEECCCCCCCCchh--hcC-----CCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEE
Confidence 9999999999876432 211 3333333322 2267889999999998863 332 6788999999
Q ss_pred EccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699 159 DVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK 202 (203)
Q Consensus 159 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~ 202 (203)
++++|.+++..+ +..+++|++|++++|.++ .++. +..++
T Consensus 179 ~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~--~~~~-l~~l~ 217 (308)
T 1h6u_A 179 KADDNKISDISP--LASLPNLIEVHLKNNQIS--DVSP-LANTS 217 (308)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECTTSCCC--BCGG-GTTCT
T ss_pred ECCCCccCcChh--hcCCCCCCEEEccCCccC--cccc-ccCCC
Confidence 999999885433 777889999999999983 3443 44443
No 81
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=1.2e-17 Score=118.25 Aligned_cols=135 Identities=19% Similarity=0.202 Sum_probs=117.0
Q ss_pred CcccEEecCCCccCCCCC-ccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699 9 DHLVFLDLSLNNFQGPIP-RGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK 87 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 87 (203)
+.++.|++++|.+++..+ ..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..+..+..+++
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-----i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 106 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-----ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLES 106 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-----CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSS
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-----CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcC
Confidence 467899999999996644 568899999999999997 77777778999999999999999999777778999999
Q ss_pred ccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699 88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL 167 (203)
Q Consensus 88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~ 167 (203)
|++|++++|.+....+..+. .+++|+.|++++|.+.+..+. .+..+++|+.|++++|.++.
T Consensus 107 L~~L~Ls~N~l~~~~~~~~~------------------~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 107 LKTLMLRSNRITCVGNDSFI------------------GLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CCEEECTTSCCCCBCTTSST------------------TCTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEECCSCCEEC
T ss_pred CCEEECCCCcCCeECHhHcC------------------CCccCCEEECCCCcCCEECHH-HhcCCCCCCEEEecCcCCcC
Confidence 99999999999876665554 678999999999999754444 78899999999999999874
No 82
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.77 E-value=1.2e-17 Score=134.74 Aligned_cols=171 Identities=25% Similarity=0.270 Sum_probs=134.0
Q ss_pred cccCCcccEEecCCCccCCCC-CccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccC-ccchhhh
Q 037699 5 FGLSDHLVFLDLSLNNFQGPI-PRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLE-GKIATSF 82 (203)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~ 82 (203)
+...++++.+++.++...... ...+..+.+++.++++.|. +....+..+..++.++.+++++|.+. ...|..+
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~-----l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~ 490 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-----TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 490 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC-----CEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred ccccccccchhhhhccccccccccccccccccccccccccc-----cccccccccccchhhhhhhhhhcccccccCchhh
Confidence 344457777777777654332 3456778888888888886 66677777788888999999888754 3466778
Q ss_pred hccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccC
Q 037699 83 GRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQ 162 (203)
Q Consensus 83 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~ 162 (203)
..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.+ ++...+..+++|+.|++++
T Consensus 491 ~~l~~L~~L~Ls~N~L~~l~~~~f~------------------~l~~L~~L~Ls~N~l~~-l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 491 TELRNLTFLDLSQCQLEQLSPTAFN------------------SLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTT------------------TCTTCCEEECTTSCCCB-CCCGGGTTCTTCCEEECTT
T ss_pred hhccccCEEECCCCccCCcChHHHc------------------CCCCCCEEECCCCcCCC-CChhHHhCCCCCCEEECCC
Confidence 8888999999999988877666555 68899999999999964 4444788999999999999
Q ss_pred CccccccCCCCCCC-CCccEEEcCCCCCCCCCCchhhh
Q 037699 163 NSLTLNVSPDWIPP-FQLKELNLESCNLVGNRFPSWLL 199 (203)
Q Consensus 163 n~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~p~~~~ 199 (203)
|++++..+..+..+ ++|++|++++|++.++.--.|+.
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~ 589 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFL 589 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHH
Confidence 99998888888887 58999999999998876555443
No 83
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=2e-17 Score=117.82 Aligned_cols=136 Identities=24% Similarity=0.285 Sum_probs=116.4
Q ss_pred CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699 8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK 87 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 87 (203)
.++|+.|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|++++|.++...+..+..+++
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-----l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 113 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-----LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-----CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchh
Confidence 3689999999999998888999999999999999997 66666677889999999999999999666667899999
Q ss_pred ccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699 88 LRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL 167 (203)
Q Consensus 88 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~ 167 (203)
|++|++++|.+... +..+. .+++|+.|++++|.+. .++...+..+++|+.|++++|.+..
T Consensus 114 L~~L~Ls~N~l~~l-p~~~~------------------~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 114 LKELFMCCNKLTEL-PRGIE------------------RLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp CCEEECCSSCCCSC-CTTGG------------------GCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred hCeEeccCCccccc-Ccccc------------------cCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCccC
Confidence 99999999998743 32222 6789999999999996 5555578899999999999999875
Q ss_pred c
Q 037699 168 N 168 (203)
Q Consensus 168 ~ 168 (203)
.
T Consensus 174 ~ 174 (229)
T 3e6j_A 174 E 174 (229)
T ss_dssp T
T ss_pred C
Confidence 4
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=5.2e-19 Score=132.69 Aligned_cols=187 Identities=17% Similarity=0.204 Sum_probs=127.6
Q ss_pred cccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCccccccccc-ccccccCCCCCCCEEEcccc-ccCcc-ch
Q 037699 3 WVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSG-TFSSSVGNLTSIQTLDLSFN-NLEGK-IA 79 (203)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~l~~~~~L~~L~l~~~-~~~~~-~~ 79 (203)
..+..+++|+.|++++|.+++..+..++.+++|++|++++|. .+.+ .++..+..+++|++|++++| .+++. ++
T Consensus 112 ~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~----~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 112 GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS----GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp HHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB----SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred HHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC----CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 345667899999999999887778888899999999999983 1443 35666778899999999999 88753 57
Q ss_pred hhhhccC-CccEEEccCC--cCCc-chhhhhhh---ccccccCCccc---ccccc-ccCCCCCEEEccCCc-cccccchh
Q 037699 80 TSFGRLC-KLRSVFLSHS--NMNQ-EISKILNI---FSTCILDGLEV---LEMTE-WQLSSLDSVNLSNNT-LFGSLFEI 147 (203)
Q Consensus 80 ~~~~~l~-~L~~L~l~~n--~~~~-~~~~~~~~---~~~~~~~~l~~---l~~~~-~~~~~L~~L~l~~n~-l~~~~~~~ 147 (203)
..+..++ +|++|++++| .+.. ..+..+.. +....+.+... ...+. ..+++|+.|++++|. +.+... .
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~ 266 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-L 266 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-G
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-H
Confidence 7788999 9999999998 4442 23333222 11111222211 11111 267899999999994 432222 2
Q ss_pred hhccCCCccEEEccCCccccccCCCCCCC-CCccEEEcCCCCCCCCCCchhhh
Q 037699 148 HFAKLSKLKYFDVSQNSLTLNVSPDWIPP-FQLKELNLESCNLVGNRFPSWLL 199 (203)
Q Consensus 148 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~p~~~~ 199 (203)
.+..+++|+.|++++| ++.. .+..+ .++..|++++|.++ +..|..+.
T Consensus 267 ~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~-~~~~~~~~ 314 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFT-TIARPTIG 314 (336)
T ss_dssp GGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSC-CTTCSSCS
T ss_pred HHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCc-cccCCccc
Confidence 5778999999999999 4432 22222 24677778999994 44555443
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=3.7e-19 Score=134.95 Aligned_cols=184 Identities=22% Similarity=0.237 Sum_probs=123.1
Q ss_pred CcccccCCcccEEecCCCccCCCCC----ccccCCC-CccEEeCCCCcccccccccccccccCCC-----CCCCEEEccc
Q 037699 2 PWVFGLSDHLVFLDLSLNNFQGPIP----RGLGNLT-SLRYLDLSANISILQYLSGTFSSSVGNL-----TSIQTLDLSF 71 (203)
Q Consensus 2 p~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~l~~~-----~~L~~L~l~~ 71 (203)
|.++...++|+.|++++|.+++..+ ..+..++ +|++|++++|. +....+..+..+ ++|++|++++
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-----l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 89 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS-----LGFKNSDELVQILAAIPANVTSLNLSG 89 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC-----GGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC-----CCHHHHHHHHHHHhccCCCccEEECcC
Confidence 3445566679999999999986665 6777888 89999999996 666555555443 8899999999
Q ss_pred cccCccchhhhhc----c-CCccEEEccCCcCCcchhhhhhhccccccCCccccccccc---------------cC-CCC
Q 037699 72 NNLEGKIATSFGR----L-CKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEW---------------QL-SSL 130 (203)
Q Consensus 72 ~~~~~~~~~~~~~----l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~---------------~~-~~L 130 (203)
|.+++..+..+.. + ++|++|++++|.+....+..+.........+++.+.+... .. ++|
T Consensus 90 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 169 (362)
T 3goz_A 90 NFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANV 169 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTC
T ss_pred CcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccc
Confidence 9988666654444 3 7899999999998776654432211100123333332211 23 388
Q ss_pred CEEEccCCccccccch---hhhccC-CCccEEEccCCccccc----cCCCCCC-CCCccEEEcCCCCCC
Q 037699 131 DSVNLSNNTLFGSLFE---IHFAKL-SKLKYFDVSQNSLTLN----VSPDWIP-PFQLKELNLESCNLV 190 (203)
Q Consensus 131 ~~L~l~~n~l~~~~~~---~~l~~~-~~L~~L~l~~n~~~~~----~~~~l~~-~~~L~~L~l~~n~l~ 190 (203)
+.|++++|.+.+..+. ..+..+ ++|+.|++++|.++.. ++..+.. .++|++|+|++|.++
T Consensus 170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 238 (362)
T 3goz_A 170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH 238 (362)
T ss_dssp CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence 8888888888654432 123344 5888888888888753 2233333 347888888888883
No 86
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.76 E-value=1.3e-17 Score=133.21 Aligned_cols=157 Identities=22% Similarity=0.298 Sum_probs=124.0
Q ss_pred ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCccccccccc--ccccccCCCCCCCEEEccccccCccchh-hh
Q 037699 6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSG--TFSSSVGNLTSIQTLDLSFNNLEGKIAT-SF 82 (203)
Q Consensus 6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~ 82 (203)
+..++|+.|++++|.+++..|..+..+++|++|++++|. +.+ ..|..+..+++|++|++++|.+++.+|. .+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-----l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 424 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-----LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC 424 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-----CCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-----cCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh
Confidence 556799999999999998889999999999999999996 554 3456788999999999999999864555 47
Q ss_pred hccCCccEEEccCCcCCcchhhhh-hhccccccCCcccccccc--ccCCCCCEEEccCCccccccchhhhccCCCccEEE
Q 037699 83 GRLCKLRSVFLSHSNMNQEISKIL-NIFSTCILDGLEVLEMTE--WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFD 159 (203)
Q Consensus 83 ~~l~~L~~L~l~~n~~~~~~~~~~-~~~~~~~~~~l~~l~~~~--~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~ 159 (203)
..+++|++|++++|.+.+..+..+ ..+....+.+...-.++. ..+++|+.|++++|.++ .++...+..+++|+.++
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEE
T ss_pred cCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEE
Confidence 788999999999999976655443 233333333333223332 37789999999999996 66664588999999999
Q ss_pred ccCCccccc
Q 037699 160 VSQNSLTLN 168 (203)
Q Consensus 160 l~~n~~~~~ 168 (203)
+++|.+.+.
T Consensus 504 l~~N~~~c~ 512 (562)
T 3a79_B 504 LHDNPWDCT 512 (562)
T ss_dssp CCSCCBCCC
T ss_pred ecCCCcCCC
Confidence 999999864
No 87
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.76 E-value=2.7e-17 Score=123.90 Aligned_cols=120 Identities=19% Similarity=0.220 Sum_probs=69.1
Q ss_pred cCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCcccccc--------cc-ccCC
Q 037699 58 VGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEM--------TE-WQLS 128 (203)
Q Consensus 58 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~--------~~-~~~~ 128 (203)
+..+++|+.+++++|.+++..+ +..+++|++|++++|.+....+ +.. +.+++.+.+ +. ..++
T Consensus 195 ~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~-----l~~L~~L~l~~n~l~~~~~~~~l~ 265 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN-----LSQLTWLEIGTNQISDINAVKDLT 265 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT-----CTTCCEEECCSSCCCCCGGGTTCT
T ss_pred ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc-----CCCCCEEECCCCccCCChhHhcCC
Confidence 3344444444444444442211 4555666666666666554332 111 222222221 11 1566
Q ss_pred CCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 129 SLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 129 ~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
+|+.|++++|.+.+ .+ .+..+++|+.|++++|.+++..+..+..+++|++|++++|.+
T Consensus 266 ~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 266 KLKMLNVGSNQISD-IS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp TCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred CcCEEEccCCccCC-Ch--hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 77788887777753 32 466777888888888877766666667777888888888887
No 88
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=2.7e-17 Score=121.18 Aligned_cols=143 Identities=24% Similarity=0.347 Sum_probs=109.2
Q ss_pred cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699 5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR 84 (203)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 84 (203)
+..+++|+.|++++|.+++..+ +..+++|++|++++|. +.. .+ .+..+++|++|++++|.+++ + ..+..
T Consensus 64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~-----l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~ 132 (291)
T 1h6t_A 64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK-----VKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVH 132 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-----CCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGG
T ss_pred HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc-----CCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcC
Confidence 4556799999999999985433 8899999999999996 444 33 48889999999999999984 3 46788
Q ss_pred cCCccEEEccCCcCCcchhhhhhhccccccCCccccccc---------cccCCCCCEEEccCCccccccchhhhccCCCc
Q 037699 85 LCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT---------EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKL 155 (203)
Q Consensus 85 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L 155 (203)
+++|++|++++|.+... + .+.. +.+++.+.+. ...+++|+.|++++|.+.+ .+ .+..+++|
T Consensus 133 l~~L~~L~l~~n~l~~~-~-~l~~-----l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~-l~--~l~~l~~L 202 (291)
T 1h6t_A 133 LPQLESLYLGNNKITDI-T-VLSR-----LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-LR--ALAGLKNL 202 (291)
T ss_dssp CTTCCEEECCSSCCCCC-G-GGGG-----CTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-CG--GGTTCTTC
T ss_pred CCCCCEEEccCCcCCcc-h-hhcc-----CCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC-Ch--hhccCCCC
Confidence 99999999999988765 2 2211 2333333322 2267899999999999964 43 47899999
Q ss_pred cEEEccCCccccc
Q 037699 156 KYFDVSQNSLTLN 168 (203)
Q Consensus 156 ~~L~l~~n~~~~~ 168 (203)
+.|++++|.++..
T Consensus 203 ~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 203 DVLELFSQECLNK 215 (291)
T ss_dssp SEEEEEEEEEECC
T ss_pred CEEECcCCcccCC
Confidence 9999999998853
No 89
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=1.1e-17 Score=133.20 Aligned_cols=164 Identities=23% Similarity=0.223 Sum_probs=135.1
Q ss_pred ccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccE
Q 037699 11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRS 90 (203)
Q Consensus 11 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 90 (203)
....+.+++.++ .+|..+. +++++|++++|. +.+..|..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 7 ~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~-----l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 78 (549)
T 2z81_A 7 SGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNK-----ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH 78 (549)
T ss_dssp TSEEECTTSCCS-SCCSCCC--TTCCEEECCSSC-----CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CceEECCCCccc-cccccCC--CCccEEECcCCc-----cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCE
Confidence 334677888888 5666553 789999999997 77777888999999999999999999777788999999999
Q ss_pred EEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccC
Q 037699 91 VFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVS 170 (203)
Q Consensus 91 L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 170 (203)
|++++|.+.+..+..+. .+++|++|++++|.+.+......++.+++|+.|++++|.+.+.++
T Consensus 79 L~Ls~n~l~~~~~~~~~------------------~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFG------------------PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp EECTTSCCCSCCHHHHT------------------TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred EECCCCccCccCHHHhc------------------cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccC
Confidence 99999999887776565 688999999999999642222267899999999999998544444
Q ss_pred -CCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699 171 -PDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201 (203)
Q Consensus 171 -~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~ 201 (203)
..+..+++|++|++++|.+ ....|.++..+
T Consensus 141 ~~~~~~l~~L~~L~L~~n~l-~~~~~~~l~~l 171 (549)
T 2z81_A 141 RIDFAGLTSLNELEIKALSL-RNYQSQSLKSI 171 (549)
T ss_dssp TTTTTTCCEEEEEEEEETTC-CEECTTTTTTC
T ss_pred HhhhhcccccCeeeccCCcc-cccChhhhhcc
Confidence 5788999999999999999 44466666554
No 90
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.74 E-value=4.5e-17 Score=122.67 Aligned_cols=171 Identities=21% Similarity=0.252 Sum_probs=119.3
Q ss_pred cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699 5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR 84 (203)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 84 (203)
+..+++|+.|++++|.+.. .+. +..+++|+.+++++|. +....+ +..+++|++|++++|.++.. +. +..
T Consensus 173 ~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~-----l~~~~~--~~~~~~L~~L~l~~n~l~~~-~~-~~~ 241 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQ-----ITDITP--VANMTRLNSLKIGNNKITDL-SP-LAN 241 (347)
T ss_dssp GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSC-----CCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTT
T ss_pred hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCC-----CCCCch--hhcCCcCCEEEccCCccCCC-cc-hhc
Confidence 4456689999999998874 332 7778888888888885 444433 67778888888888888743 33 777
Q ss_pred cCCccEEEccCCcCCcchh-hhhhhccccccCCcccccccc-ccCCCCCEEEccCCccccccchhhhccCCCccEEEccC
Q 037699 85 LCKLRSVFLSHSNMNQEIS-KILNIFSTCILDGLEVLEMTE-WQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQ 162 (203)
Q Consensus 85 l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~l~~l~~~~-~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~ 162 (203)
+++|++|++++|.+..... .....+....+.+.....++. ..+++|+.|++++|.+.+..+. .+..+++|+.|++++
T Consensus 242 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQ 320 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCS
T ss_pred CCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccC
Confidence 8888888888887765311 001111111122211111222 2678999999999999754444 788999999999999
Q ss_pred CccccccCCCCCCCCCccEEEcCCCCC
Q 037699 163 NSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 163 n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
|.+++..+ +..+++|++|++++|.|
T Consensus 321 n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 321 NHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp SSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred CccccccC--hhhhhccceeehhhhcc
Confidence 99986554 78899999999999998
No 91
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=8.3e-18 Score=114.11 Aligned_cols=84 Identities=23% Similarity=0.227 Sum_probs=43.6
Q ss_pred CcccEEecCCCccC-CCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699 9 DHLVFLDLSLNNFQ-GPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK 87 (203)
Q Consensus 9 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 87 (203)
++++.|++++|.++ +.+|..+..+++|++|++++|. +... ..+..+++|++|++++|.+++..|..+..+++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-----l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-----LISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-----CCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-----CCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 45555666665554 3445555555555555555553 3332 44455555555555555555434444444555
Q ss_pred ccEEEccCCcCC
Q 037699 88 LRSVFLSHSNMN 99 (203)
Q Consensus 88 L~~L~l~~n~~~ 99 (203)
|++|++++|.+.
T Consensus 97 L~~L~Ls~N~l~ 108 (168)
T 2ell_A 97 LTHLNLSGNKLK 108 (168)
T ss_dssp CCEEECBSSSCC
T ss_pred CCEEeccCCccC
Confidence 555555555443
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=5.7e-17 Score=117.72 Aligned_cols=149 Identities=22% Similarity=0.279 Sum_probs=118.5
Q ss_pred ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhcc
Q 037699 6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRL 85 (203)
Q Consensus 6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l 85 (203)
..+++|+.|++++|.++ .++ .+..+++|++|++++|. +.+..+ +..+++|++|++++|.+++ ++.. ..
T Consensus 38 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~-----i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~-~~- 105 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQ-----ISDLSP--LKDLTKLEELSVNRNRLKN-LNGI-PS- 105 (263)
T ss_dssp HHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSC-----CCCCGG--GTTCSSCCEEECCSSCCSC-CTTC-CC-
T ss_pred hhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCc-----cCCChh--hccCCCCCEEECCCCccCC-cCcc-cc-
Confidence 34568999999999888 444 67889999999999986 555443 8889999999999999884 4432 22
Q ss_pred CCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcc
Q 037699 86 CKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSL 165 (203)
Q Consensus 86 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~ 165 (203)
++|++|++++|.+.... .+. .+++|+.|++++|.+.+ .+ .+..+++|+.|++++|.+
T Consensus 106 ~~L~~L~L~~N~l~~~~--~l~------------------~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L~~N~i 162 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD--SLI------------------HLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDLHGNEI 162 (263)
T ss_dssp SSCCEEECCSSCCSBSG--GGT------------------TCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEECTTSCC
T ss_pred CcccEEEccCCccCCCh--hhc------------------CcccccEEECCCCcCCC-Ch--HHccCCCCCEEECCCCcC
Confidence 88999999999887631 122 67899999999999964 33 578899999999999999
Q ss_pred ccccCCCCCCCCCccEEEcCCCCCCC
Q 037699 166 TLNVSPDWIPPFQLKELNLESCNLVG 191 (203)
Q Consensus 166 ~~~~~~~l~~~~~L~~L~l~~n~l~~ 191 (203)
++. ..+..+++|+.|++++|.+++
T Consensus 163 ~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 163 TNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred cch--HHhccCCCCCEEeCCCCcccC
Confidence 865 678889999999999999843
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=5.3e-17 Score=130.36 Aligned_cols=61 Identities=25% Similarity=0.264 Sum_probs=47.4
Q ss_pred cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCC
Q 037699 126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVG 191 (203)
Q Consensus 126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 191 (203)
.+++|+.|++++|.+.+..+ +..+++|+.|+|++|.+++. +.+..+++|+.|+|++|.+++
T Consensus 151 ~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp SCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred ccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 67788888888888864332 67888888889888888753 457778888899888888744
No 94
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=6.2e-17 Score=109.79 Aligned_cols=141 Identities=21% Similarity=0.141 Sum_probs=116.2
Q ss_pred CCCCccEEeCCCCcccccccc-cccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhc
Q 037699 31 NLTSLRYLDLSANISILQYLS-GTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIF 109 (203)
Q Consensus 31 ~l~~L~~L~l~~~~~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 109 (203)
..+++++|++++|. +. +.+|..+..+++|++|++++|.++.. ..+..+++|++|++++|.+....+..+.
T Consensus 22 ~~~~L~~L~l~~n~-----l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-- 92 (168)
T 2ell_A 22 TPAAVRELVLDNCK-----SNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE-- 92 (168)
T ss_dssp CTTSCSEEECCSCB-----CBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH--
T ss_pred CcccCCEEECCCCC-----CChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh--
Confidence 34789999999996 55 46788888999999999999999854 7788999999999999999875555544
Q ss_pred cccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccC---CCCCCCCCccEEEcCC
Q 037699 110 STCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVS---PDWIPPFQLKELNLES 186 (203)
Q Consensus 110 ~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~ 186 (203)
.+++|+.|++++|.+.+......+..+++|+.|++++|.+++..+ ..+..+++|++|++++
T Consensus 93 ----------------~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 93 ----------------KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp ----------------HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred ----------------hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 578999999999999643222478899999999999999985443 3678899999999999
Q ss_pred CCCCCCCCchhh
Q 037699 187 CNLVGNRFPSWL 198 (203)
Q Consensus 187 n~l~~~~~p~~~ 198 (203)
|.+ ..+|+..
T Consensus 157 n~~--~~~~~~~ 166 (168)
T 2ell_A 157 RED--QEAPDSD 166 (168)
T ss_dssp TTS--CBCCSSS
T ss_pred CCh--hhccccc
Confidence 998 6666643
No 95
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.73 E-value=3.3e-16 Score=122.16 Aligned_cols=79 Identities=23% Similarity=0.214 Sum_probs=40.3
Q ss_pred CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCC
Q 037699 8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCK 87 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 87 (203)
+++|+.|++++|.+++. + ++.+++|++|++++|. +.+. + +..+++|++|++++|.+++ ++ ++.+++
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~-----l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~ 128 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNK-----LTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPL 128 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSC-----CSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTT
T ss_pred cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCC-----Ccee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCc
Confidence 34555555555555432 2 4455555555555553 3222 1 4555555666665555553 22 455556
Q ss_pred ccEEEccCCcCCc
Q 037699 88 LRSVFLSHSNMNQ 100 (203)
Q Consensus 88 L~~L~l~~n~~~~ 100 (203)
|++|++++|.+.+
T Consensus 129 L~~L~l~~N~l~~ 141 (457)
T 3bz5_A 129 LTYLNCARNTLTE 141 (457)
T ss_dssp CCEEECTTSCCSC
T ss_pred CCEEECCCCccce
Confidence 6666666655544
No 96
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=9.2e-17 Score=111.33 Aligned_cols=130 Identities=22% Similarity=0.293 Sum_probs=76.2
Q ss_pred ccEEecCCCccCCCCCccccCCCCccEEeCCCCccccccccccccc-ccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699 11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSS-SVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89 (203)
Q Consensus 11 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (203)
-+.++++++.++ .+|..+.. ++++|++++|. +....+. .+..+++|++|++++|.+++..|..+..+++|+
T Consensus 10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~-----i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNE-----LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCC-----CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCc-----CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 356777777775 45554432 67777777775 4444433 356666777777777777655566666666666
Q ss_pred EEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccc
Q 037699 90 SVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTL 167 (203)
Q Consensus 90 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~ 167 (203)
+|++++|.+....+..+. .+++|+.|++++|.+.+..+. .+..+++|+.|++++|.+++
T Consensus 82 ~L~Ls~N~l~~~~~~~~~------------------~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFL------------------GLHQLKTLNLYDNQISCVMPG-SFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp EEECCSCCCCEECSSSST------------------TCTTCCEEECCSSCCCEECTT-SSTTCTTCCEEECTTCCBCC
T ss_pred EEECCCCcCCccCHHHhc------------------CCCCCCEEECCCCcCCeeCHH-HhhcCCCCCEEEeCCCCccC
Confidence 666666666554333222 345566666666655433232 45555556666666655553
No 97
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.72 E-value=1.5e-16 Score=124.50 Aligned_cols=164 Identities=21% Similarity=0.278 Sum_probs=118.6
Q ss_pred cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699 5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR 84 (203)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 84 (203)
++.+++|+.|++++|.+++. +.+..+++|++|++++|. +....+ +..+++|+.|++++|.+++.. . +..
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~-----l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~-~~~ 285 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQ-----ISNLAP--LSGLTKLTELKLGANQISNIS-P-LAG 285 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC-----CCCCGG--GTTCTTCSEEECCSSCCCCCG-G-GTT
T ss_pred ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCc-----cccchh--hhcCCCCCEEECCCCccCccc-c-ccC
Confidence 34456888899998888742 467788888888888885 444433 677888888888888887433 3 777
Q ss_pred cCCccEEEccCCcCCcchhhhhhhccccccCCccccccc---------cccCCCCCEEEccCCccccccchhhhccCCCc
Q 037699 85 LCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT---------EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKL 155 (203)
Q Consensus 85 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L 155 (203)
+++|++|++++|.+.+..+ +.. +++++.+.+. ...+++|+.|++++|.+.+. + .+..+++|
T Consensus 286 l~~L~~L~L~~n~l~~~~~--~~~-----l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~--~l~~l~~L 355 (466)
T 1o6v_A 286 LTALTNLELNENQLEDISP--ISN-----LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-S--SLANLTNI 355 (466)
T ss_dssp CTTCSEEECCSSCCSCCGG--GGG-----CTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC-G--GGTTCTTC
T ss_pred CCccCeEEcCCCcccCchh--hcC-----CCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc-h--hhccCCCC
Confidence 8888888888888776443 111 2233332221 22678899999999988643 2 57788999
Q ss_pred cEEEccCCccccccCCCCCCCCCccEEEcCCCCCCC
Q 037699 156 KYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVG 191 (203)
Q Consensus 156 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 191 (203)
+.|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 999999999887655 7888899999999998843
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.3e-16 Score=128.15 Aligned_cols=157 Identities=22% Similarity=0.284 Sum_probs=127.6
Q ss_pred cCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccC
Q 037699 7 LSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLC 86 (203)
Q Consensus 7 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 86 (203)
.+++|+.|++++|.+.. ++ .+..+++|+.|++++|. +....+ +..+++|+.|++++|.+.+ ++ .+..++
T Consensus 41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~-----l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~ 109 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNK-----LTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLK 109 (605)
T ss_dssp HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSC-----CCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCT
T ss_pred cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCC-----CCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCC
Confidence 34589999999999873 44 58889999999999996 555444 8899999999999999983 33 688999
Q ss_pred CccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccc
Q 037699 87 KLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166 (203)
Q Consensus 87 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~ 166 (203)
+|++|++++|.+... + .+. .+++|+.|++++|.+.+ . . .+..+++|+.|+|++|.++
T Consensus 110 ~L~~L~Ls~N~l~~l-~-~l~------------------~l~~L~~L~Ls~N~l~~-l-~-~l~~l~~L~~L~Ls~N~l~ 166 (605)
T 1m9s_A 110 KLKSLSLEHNGISDI-N-GLV------------------HLPQLESLYLGNNKITD-I-T-VLSRLTKLDTLSLEDNQIS 166 (605)
T ss_dssp TCCEEECTTSCCCCC-G-GGG------------------GCTTCSEEECCSSCCCC-C-G-GGGSCTTCSEEECCSSCCC
T ss_pred CCCEEEecCCCCCCC-c-ccc------------------CCCccCEEECCCCccCC-c-h-hhcccCCCCEEECcCCcCC
Confidence 999999999998763 1 122 67899999999999964 3 2 6889999999999999998
Q ss_pred cccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699 167 LNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK 202 (203)
Q Consensus 167 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~ 202 (203)
+..+ +..+++|+.|+|++|.|+ .+| .+..++
T Consensus 167 ~~~~--l~~l~~L~~L~Ls~N~i~--~l~-~l~~l~ 197 (605)
T 1m9s_A 167 DIVP--LAGLTKLQNLYLSKNHIS--DLR-ALAGLK 197 (605)
T ss_dssp CCGG--GTTCTTCCEEECCSSCCC--BCG-GGTTCT
T ss_pred Cchh--hccCCCCCEEECcCCCCC--CCh-HHccCC
Confidence 7555 888999999999999994 344 355543
No 99
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=1.5e-16 Score=105.76 Aligned_cols=129 Identities=21% Similarity=0.221 Sum_probs=92.4
Q ss_pred CCcccEEecCCCccC-CCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccC
Q 037699 8 SDHLVFLDLSLNNFQ-GPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLC 86 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 86 (203)
.++++.|++++|.++ +.+|..+..+++|++|++++|. +... ..+..+++|++|++++|.+++..|..+..++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-----l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-----LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-----CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-----CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 357888888888887 5677777888888888888885 4444 6677788888888888888865777777788
Q ss_pred CccEEEccCCcCCcch-hhhhhhccccccCCccccccccccCCCCCEEEccCCccccccc--hhhhccCCCccEEEcc
Q 037699 87 KLRSVFLSHSNMNQEI-SKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLF--EIHFAKLSKLKYFDVS 161 (203)
Q Consensus 87 ~L~~L~l~~n~~~~~~-~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~~~~L~~L~l~ 161 (203)
+|++|++++|.+.+.. +..+. .+++|+.|++++|.+.+..+ ...+..+++|+.|+++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~------------------~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLK------------------KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGG------------------GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCEEECCCCcCCChHHHHHHh------------------hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 8888888888776532 22222 56777777777777754322 1356677777777665
No 100
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.72 E-value=3.3e-16 Score=122.47 Aligned_cols=163 Identities=23% Similarity=0.226 Sum_probs=127.2
Q ss_pred cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699 5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR 84 (203)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 84 (203)
+..+++|+.|++++|.+.+..+ ++.+++|++|++++|. +... ..+..+++|++|++++|.+++..+ +..
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~-----l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ-----LKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-----CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCC-----cccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 4556799999999999985544 7789999999999996 4443 357789999999999999985444 888
Q ss_pred cCCccEEEccCCcCCcchhhhhhhccccccCCccccccc---------cccCCCCCEEEccCCccccccchhhhccCCCc
Q 037699 85 LCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMT---------EWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKL 155 (203)
Q Consensus 85 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L 155 (203)
+++|++|++++|.+....+ +.. +.+++.+.+. ...+++|+.|++++|.+.+..+ +..+++|
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~-----l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L 333 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAG-----LTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKL 333 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTT-----CTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG---GGGCTTC
T ss_pred CCCCCEEECCCCccCcccc--ccC-----CCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh---hccCccC
Confidence 9999999999999886544 211 2333333322 2267899999999999865433 5788999
Q ss_pred cEEEccCCccccccCCCCCCCCCccEEEcCCCCCC
Q 037699 156 KYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLV 190 (203)
Q Consensus 156 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 190 (203)
+.|++++|.+++. +.+..+++|++|++++|.++
T Consensus 334 ~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~ 366 (466)
T 1o6v_A 334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQIS 366 (466)
T ss_dssp CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred CEeECCCCccCCc--hhhccCCCCCEEeCCCCccC
Confidence 9999999998864 46788899999999999993
No 101
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=3.7e-18 Score=130.50 Aligned_cols=185 Identities=16% Similarity=0.169 Sum_probs=129.6
Q ss_pred ccccCCcccEEecCCCccCCC----CCccccCCCCccEEeCCCCccccccccccccccc-------CCCCCCCEEEcccc
Q 037699 4 VFGLSDHLVFLDLSLNNFQGP----IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSV-------GNLTSIQTLDLSFN 72 (203)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-------~~~~~L~~L~l~~~ 72 (203)
.+..+++|+.|++++|.++.. ++..+..+++|++|++++|.. ..+.+..|..+ ..+++|++|++++|
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~--~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT--GRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT--TSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccccc--CccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 344567899999999998865 334477899999999998730 01333344443 78899999999999
Q ss_pred ccCc----cchhhhhccCCccEEEccCCcCCcchhhhhhh-ccccc-------cCCcccccccc---------------c
Q 037699 73 NLEG----KIATSFGRLCKLRSVFLSHSNMNQEISKILNI-FSTCI-------LDGLEVLEMTE---------------W 125 (203)
Q Consensus 73 ~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~~~-------~~~l~~l~~~~---------------~ 125 (203)
.++. .++..+..+++|++|++++|.+....+..+.. +.... .+.++.+.+.. .
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 9986 47778899999999999999986544433321 11000 02333333211 1
Q ss_pred cCCCCCEEEccCCcccccc----chhhhccCCCccEEEccCCccc----cccCCCCCCCCCccEEEcCCCCCC
Q 037699 126 QLSSLDSVNLSNNTLFGSL----FEIHFAKLSKLKYFDVSQNSLT----LNVSPDWIPPFQLKELNLESCNLV 190 (203)
Q Consensus 126 ~~~~L~~L~l~~n~l~~~~----~~~~l~~~~~L~~L~l~~n~~~----~~~~~~l~~~~~L~~L~l~~n~l~ 190 (203)
.+++|+.|++++|.+.+.. ....+..+++|+.|++++|.++ ..++..+..+++|++|+|++|.++
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 5678999999999885321 1215678889999999999986 445666778889999999999983
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=2e-16 Score=110.03 Aligned_cols=133 Identities=18% Similarity=0.199 Sum_probs=110.0
Q ss_pred cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699 5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR 84 (203)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 84 (203)
+..+++|+.|++++|.++ .+..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..+..+..
T Consensus 62 l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~-----l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~ 134 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKD-----VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134 (197)
T ss_dssp GGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTT-----CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred HhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCc-----cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh
Confidence 455679999999999765 34578899999999999997 77777888999999999999999999878899999
Q ss_pred cCCccEEEccCCc-CCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCC
Q 037699 85 LCKLRSVFLSHSN-MNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQN 163 (203)
Q Consensus 85 l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n 163 (203)
+++|++|++++|. +... + .+. .+++|+.|++++|.+.+ .+ .+..+++|+.|++++|
T Consensus 135 l~~L~~L~L~~n~~i~~~-~-~l~------------------~l~~L~~L~l~~n~i~~-~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAITDI-M-PLK------------------TLPELKSLNIQFDGVHD-YR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp CSSCCEEECCSCTBCCCC-G-GGG------------------GCSSCCEEECTTBCCCC-CT--TGGGCSSCCEEEECBC
T ss_pred CCCCCEEEccCCCCcccc-H-hhc------------------CCCCCCEEECCCCCCcC-hH--HhccCCCCCEEEeeCc
Confidence 9999999999998 5543 2 222 67899999999999964 33 5778999999999999
Q ss_pred cccc
Q 037699 164 SLTL 167 (203)
Q Consensus 164 ~~~~ 167 (203)
++.+
T Consensus 192 ~i~~ 195 (197)
T 4ezg_A 192 TIGG 195 (197)
T ss_dssp ----
T ss_pred ccCC
Confidence 9864
No 103
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=2.3e-16 Score=109.34 Aligned_cols=111 Identities=22% Similarity=0.219 Sum_probs=54.8
Q ss_pred CCCEEEccccccCccchh-hhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccc
Q 037699 63 SIQTLDLSFNNLEGKIAT-SFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLF 141 (203)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~ 141 (203)
++++|++++|.++...+. .+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+.
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------~l~~L~~L~Ls~N~l~ 91 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE------------------GASHIQELQLGENKIK 91 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT------------------TCTTCCEEECCSCCCC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC------------------CcccCCEEECCCCcCC
Confidence 455555555555433222 245555555555555555444333332 3445555555555554
Q ss_pred cccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCC
Q 037699 142 GSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGN 192 (203)
Q Consensus 142 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~ 192 (203)
+. +...+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.++
T Consensus 92 ~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 92 EI-SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp EE-CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred cc-CHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 22 222344555555555555555544444555555555555555555443
No 104
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.70 E-value=3.7e-16 Score=108.31 Aligned_cols=80 Identities=20% Similarity=0.330 Sum_probs=38.9
Q ss_pred cEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEE
Q 037699 12 VFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSV 91 (203)
Q Consensus 12 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 91 (203)
+.++++++.++ .+|..+. .++++|++++|. +. .+|..+..+++|++|++++|.++...+..|..+++|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~-----i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L 83 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQ-----FT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSC-----CC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCc-----Cc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEE
Confidence 34555555555 3443322 345555555553 22 334445555555555555555554434444555555555
Q ss_pred EccCCcCCc
Q 037699 92 FLSHSNMNQ 100 (203)
Q Consensus 92 ~l~~n~~~~ 100 (203)
++++|.+..
T Consensus 84 ~Ls~N~l~~ 92 (193)
T 2wfh_A 84 ILSYNRLRC 92 (193)
T ss_dssp ECCSSCCCB
T ss_pred ECCCCccCE
Confidence 555554443
No 105
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=4e-18 Score=130.28 Aligned_cols=187 Identities=17% Similarity=0.204 Sum_probs=132.4
Q ss_pred ccccCCcccEEecCCCccC---CCCCccc-------cCCCCccEEeCCCCccccccccc----ccccccCCCCCCCEEEc
Q 037699 4 VFGLSDHLVFLDLSLNNFQ---GPIPRGL-------GNLTSLRYLDLSANISILQYLSG----TFSSSVGNLTSIQTLDL 69 (203)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~---~~~~~~~-------~~l~~L~~L~l~~~~~~~~~~~~----~~~~~l~~~~~L~~L~l 69 (203)
.+..+++|+.|++++|.+. +.+|..+ ..+++|++|++++|. +.. .++..+..+++|++|++
T Consensus 55 ~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~L~~L~L 129 (386)
T 2ca6_A 55 NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-----FGPTAQEPLIDFLSKHTPLEHLYL 129 (386)
T ss_dssp TTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-----CCTTTHHHHHHHHHHCTTCCEEEC
T ss_pred HHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-----CCHHHHHHHHHHHHhCCCCCEEEC
Confidence 3556779999999997544 3445444 688999999999996 555 46777888999999999
Q ss_pred cccccCccchhh----hhcc---------CCccEEEccCCcCCcc-hhhhhhhccccccCCcccccc-------------
Q 037699 70 SFNNLEGKIATS----FGRL---------CKLRSVFLSHSNMNQE-ISKILNIFSTCILDGLEVLEM------------- 122 (203)
Q Consensus 70 ~~~~~~~~~~~~----~~~l---------~~L~~L~l~~n~~~~~-~~~~~~~~~~~~~~~l~~l~~------------- 122 (203)
++|.++...+.. +..+ ++|++|++++|.+... .+.....+.. +.+++.+.+
T Consensus 130 ~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~L~~n~l~~~g~~~l 207 (386)
T 2ca6_A 130 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS--HRLLHTVKMVQNGIRPEGIEHL 207 (386)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH--CTTCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh--CCCcCEEECcCCCCCHhHHHHH
Confidence 999997443333 4444 8999999999999743 3321111111 122222221
Q ss_pred ---ccccCCCCCEEEccCCccc----cccchhhhccCCCccEEEccCCccccc----cCCCC--CCCCCccEEEcCCCCC
Q 037699 123 ---TEWQLSSLDSVNLSNNTLF----GSLFEIHFAKLSKLKYFDVSQNSLTLN----VSPDW--IPPFQLKELNLESCNL 189 (203)
Q Consensus 123 ---~~~~~~~L~~L~l~~n~l~----~~~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~l--~~~~~L~~L~l~~n~l 189 (203)
....+++|+.|++++|.++ ..++. .+..+++|+.|++++|.++.. ++..+ ..+++|+.|+|++|.+
T Consensus 208 ~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~-~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAI-ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp HHTTGGGCTTCCEEECCSSCCHHHHHHHHHH-HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred HHHHhhcCCCccEEECcCCCCCcHHHHHHHH-HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 1126789999999999985 23444 678899999999999999864 34444 3378999999999999
Q ss_pred CCC---CCchhh
Q 037699 190 VGN---RFPSWL 198 (203)
Q Consensus 190 ~~~---~~p~~~ 198 (203)
++. .+|..+
T Consensus 287 ~~~g~~~l~~~l 298 (386)
T 2ca6_A 287 ELDAVRTLKTVI 298 (386)
T ss_dssp BHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 321 377666
No 106
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=5.9e-16 Score=120.73 Aligned_cols=166 Identities=19% Similarity=0.135 Sum_probs=109.0
Q ss_pred cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699 5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR 84 (203)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 84 (203)
++.+++|+.|++++|.+++ .| .+..+++|++|++++|. +.+. + +..+++|++|++++|.+++. + ++.
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~-----l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNN-----ITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp HHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSC-----CSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred hhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCc-----CCeE-c--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 3445799999999999985 45 68899999999999996 5553 3 78899999999999999853 3 889
Q ss_pred cCCccEEEccCCcCCcchhhhhhhccccccC-------------Cccccccc---------cccCCCCCEEEccCCcccc
Q 037699 85 LCKLRSVFLSHSNMNQEISKILNIFSTCILD-------------GLEVLEMT---------EWQLSSLDSVNLSNNTLFG 142 (203)
Q Consensus 85 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~-------------~l~~l~~~---------~~~~~~L~~L~l~~n~l~~ 142 (203)
+++|++|++++|.+..........+....+. .++.+.+. ...+++|+.|++++|.+++
T Consensus 105 l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC
T ss_pred CCcCCEEECCCCcCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce
Confidence 9999999999999876421111111111111 11111111 1133455555555555532
Q ss_pred ccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCC
Q 037699 143 SLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLV 190 (203)
Q Consensus 143 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~ 190 (203)
++ +..+++|+.|++++|.+++. .+..+++|++|++++|.++
T Consensus 185 -l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~ 225 (457)
T 3bz5_A 185 -LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLT 225 (457)
T ss_dssp -CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCS
T ss_pred -ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccc
Confidence 22 44556666666666666542 2556677777777777773
No 107
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.69 E-value=8.4e-17 Score=107.01 Aligned_cols=130 Identities=18% Similarity=0.155 Sum_probs=105.8
Q ss_pred CCCccEEeCCCCcccccccc-cccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhcc
Q 037699 32 LTSLRYLDLSANISILQYLS-GTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFS 110 (203)
Q Consensus 32 l~~L~~L~l~~~~~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 110 (203)
.+++++|++++|. +. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+....+..+.
T Consensus 16 ~~~l~~L~l~~n~-----l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~--- 85 (149)
T 2je0_A 16 PSDVKELVLDNSR-----SNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE--- 85 (149)
T ss_dssp GGGCSEEECTTCB-----CBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH---
T ss_pred CccCeEEEccCCc-----CChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh---
Confidence 4779999999996 65 57788889999999999999999854 6788899999999999999876565554
Q ss_pred ccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccC---CCCCCCCCccEEEcCC
Q 037699 111 TCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVS---PDWIPPFQLKELNLES 186 (203)
Q Consensus 111 ~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~ 186 (203)
.+++|+.|++++|.+.+......+..+++|+.|++++|.+++..+ ..+..+++|+.|++++
T Consensus 86 ---------------~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 86 ---------------KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ---------------HCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ---------------hCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 578899999999999643222368899999999999999986543 3577788999998763
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.69 E-value=2.4e-16 Score=125.54 Aligned_cols=75 Identities=19% Similarity=0.299 Sum_probs=33.7
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (203)
+++.|++++|.+++ +|..+ .++|++|++++|. +. .+| ..+++|++|++++|.+++ +|. +.. +|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~-----l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNA-----LI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLK 123 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSC-----CS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCC-----Cc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCC
Confidence 45555555555553 33333 2445555555553 22 223 223445555555555542 333 222 445
Q ss_pred EEEccCCcCCc
Q 037699 90 SVFLSHSNMNQ 100 (203)
Q Consensus 90 ~L~l~~n~~~~ 100 (203)
+|++++|.+..
T Consensus 124 ~L~Ls~N~l~~ 134 (571)
T 3cvr_A 124 HLDVDNNQLTM 134 (571)
T ss_dssp EEECCSSCCSC
T ss_pred EEECCCCcCCC
Confidence 55555544443
No 109
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.68 E-value=1.6e-15 Score=120.78 Aligned_cols=167 Identities=20% Similarity=0.255 Sum_probs=116.6
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
++|+.|++++|.++ .+| ..+++|++|++++|. +.. +|. +.. +|++|++++|.+++ +|. .+++|
T Consensus 80 ~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~-----l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L 142 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP---ELPASLEYLDACDNR-----LST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALL 142 (571)
T ss_dssp TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSC-----CSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTC
T ss_pred CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCC-----CCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccc
Confidence 58999999999999 566 457999999999996 555 566 554 89999999999985 666 68899
Q ss_pred cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCc-------cEEEcc
Q 037699 89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKL-------KYFDVS 161 (203)
Q Consensus 89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L-------~~L~l~ 161 (203)
+.|++++|.+..... ....+..+.+.+...-.++... ++|+.|++++|.++ .++. +.. +| +.|+++
T Consensus 143 ~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L~~lp~l~-~~L~~L~Ls~N~L~-~lp~--~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 143 EYINADNNQLTMLPE-LPTSLEVLSVRNNQLTFLPELP-ESLEALDVSTNLLE-SLPA--VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp CEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCC-TTCCEEECCSSCCS-SCCC--CC----------CCEEEECC
T ss_pred cEEeCCCCccCcCCC-cCCCcCEEECCCCCCCCcchhh-CCCCEEECcCCCCC-chhh--HHH--hhhcccccceEEecC
Confidence 999999999876332 2222222222222222222212 67888888888875 4544 222 55 888888
Q ss_pred CCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699 162 QNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201 (203)
Q Consensus 162 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~ 201 (203)
+|.++ .+|..+..+++|+.|+|++|.+ ....|..+..+
T Consensus 216 ~N~l~-~lp~~l~~l~~L~~L~L~~N~l-~~~~p~~l~~l 253 (571)
T 3cvr_A 216 ENRIT-HIPENILSLDPTCTIILEDNPL-SSRIRESLSQQ 253 (571)
T ss_dssp SSCCC-CCCGGGGGSCTTEEEECCSSSC-CHHHHHHHHHH
T ss_pred CCcce-ecCHHHhcCCCCCEEEeeCCcC-CCcCHHHHHHh
Confidence 88887 4666666788888888888888 44566666543
No 110
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.67 E-value=4.2e-16 Score=117.68 Aligned_cols=181 Identities=14% Similarity=0.137 Sum_probs=123.5
Q ss_pred CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccc-cccCCCCCCCE-EEccccccCccchhhhhcc
Q 037699 8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFS-SSVGNLTSIQT-LDLSFNNLEGKIATSFGRL 85 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~l~~~~~L~~-L~l~~~~~~~~~~~~~~~l 85 (203)
.++++.|++++|.++...+.+|.++++|++|++++|. +.+.++ ..+.++++++. +.+..|.++...+..|..+
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-----i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l 103 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND-----VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL 103 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT-----TCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCC
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC-----CCCccChhHhhcchhhhhhhcccCCcccccCchhhhhc
Confidence 4589999999999996566789999999999999996 655444 45788888776 5566788886667788999
Q ss_pred CCccEEEccCCcCCcchhhhhhh-ccc--ccc-CCccccccccc---c-CCCCCEEEccCCccccccchhhhccCCCccE
Q 037699 86 CKLRSVFLSHSNMNQEISKILNI-FST--CIL-DGLEVLEMTEW---Q-LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKY 157 (203)
Q Consensus 86 ~~L~~L~l~~n~~~~~~~~~~~~-~~~--~~~-~~l~~l~~~~~---~-~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~ 157 (203)
++|+++++++|.+....+..+.. ... ... .......++.. . ...++.|++++|.+. .++...+ ...+++.
T Consensus 104 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f-~~~~L~~ 181 (350)
T 4ay9_X 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF-NGTQLDE 181 (350)
T ss_dssp TTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSS-TTEEEEE
T ss_pred cccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhc-cccchhH
Confidence 99999999999887654432211 100 001 11111112211 2 245788899999885 5555333 4567888
Q ss_pred EEccC-CccccccCCCCCCCCCccEEEcCCCCCCCCCCchh
Q 037699 158 FDVSQ-NSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSW 197 (203)
Q Consensus 158 L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~ 197 (203)
+++.+ |.++......+..+++|++|++++|+| ..+|..
T Consensus 182 l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l--~~lp~~ 220 (350)
T 4ay9_X 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRI--HSLPSY 220 (350)
T ss_dssp EECTTCTTCCCCCTTTTTTEECCSEEECTTSCC--CCCCSS
T ss_pred HhhccCCcccCCCHHHhccCcccchhhcCCCCc--CccChh
Confidence 88875 555543345677888899999999888 556553
No 111
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=2.3e-15 Score=104.28 Aligned_cols=136 Identities=16% Similarity=0.196 Sum_probs=100.9
Q ss_pred cEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccC
Q 037699 36 RYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILD 115 (203)
Q Consensus 36 ~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 115 (203)
+.++++++. +. .+|..+. +++++|++++|.++ .+|..+..+++|++|++++|.+....+..+.
T Consensus 13 ~~l~~~~~~-----l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~-------- 75 (193)
T 2wfh_A 13 TVVRCSNKG-----LK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFS-------- 75 (193)
T ss_dssp TEEECTTSC-----CS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTT--------
T ss_pred CEEEcCCCC-----CC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHcc--------
Confidence 567777774 33 3454432 47888888888887 6777888888888888888888766555444
Q ss_pred CccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCc
Q 037699 116 GLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFP 195 (203)
Q Consensus 116 ~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p 195 (203)
.+++|+.|++++|.+. .++...+..+++|+.|++++|.++...+..+..+++|+.|++++|.+.++.-.
T Consensus 76 ----------~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 76 ----------NMTQLLTLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp ----------TCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred ----------CCCCCCEEECCCCccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 6778888888888886 44444678888888888888888865555677888888888888888666554
Q ss_pred hhhh
Q 037699 196 SWLL 199 (203)
Q Consensus 196 ~~~~ 199 (203)
.|+.
T Consensus 145 ~~l~ 148 (193)
T 2wfh_A 145 QWLS 148 (193)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 112
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.64 E-value=2.3e-17 Score=128.65 Aligned_cols=180 Identities=18% Similarity=0.101 Sum_probs=105.0
Q ss_pred cccEEecCCCccCCC----CCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCcc----chhh
Q 037699 10 HLVFLDLSLNNFQGP----IPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGK----IATS 81 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~ 81 (203)
+|+.|++++|.++.. ++..+..+++|++|++++|...........+.....+++|++|++++|.++.. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 666777777766643 34555567777777777775111111111122333567788888888877743 5666
Q ss_pred hhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccc---------------cCCCCCEEEccCCccccccch
Q 037699 82 FGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEW---------------QLSSLDSVNLSNNTLFGSLFE 146 (203)
Q Consensus 82 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~---------------~~~~L~~L~l~~n~l~~~~~~ 146 (203)
+..+++|++|++++|.+....+..+..........++.+.+..+ .+++|+.|++++|.+.+..+.
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 67778888888888877654443332111100123333332211 346778888888777543322
Q ss_pred hhhcc-----CCCccEEEccCCcccc----ccCCCCCCCCCccEEEcCCCCCC
Q 037699 147 IHFAK-----LSKLKYFDVSQNSLTL----NVSPDWIPPFQLKELNLESCNLV 190 (203)
Q Consensus 147 ~~l~~-----~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~l~ 190 (203)
.+.. .++|+.|++++|.++. .++..+..+++|++|++++|.++
T Consensus 360 -~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~ 411 (461)
T 1z7x_W 360 -ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG 411 (461)
T ss_dssp -HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred -HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCC
Confidence 2221 5577888888887774 44555556777888888888773
No 113
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=7.1e-15 Score=100.42 Aligned_cols=130 Identities=22% Similarity=0.313 Sum_probs=70.2
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (203)
..+.++++++.++ .+|..+ ..++++|++++|. +....+..+..+++|++|++++|.++...+..+..+++|+
T Consensus 8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~-----l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 79 (177)
T 2o6r_A 8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNK-----LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLT 79 (177)
T ss_dssp ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSC-----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCc-----ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccC
Confidence 3456677777666 344332 2566777777765 5544444556666666676666666644344455566666
Q ss_pred EEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccc
Q 037699 90 SVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166 (203)
Q Consensus 90 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~ 166 (203)
+|++++|.+....+..+. .+++|+.|++++|.+. ..+...+..+++|+.|++++|.++
T Consensus 80 ~L~l~~N~l~~~~~~~~~------------------~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 80 ILYLHENKLQSLPNGVFD------------------KLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EEECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECCCCCccccCHHHhh------------------CCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCee
Confidence 666666655543332222 3445555555555553 333323444555555555555544
No 114
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=7.5e-15 Score=100.29 Aligned_cols=130 Identities=21% Similarity=0.216 Sum_probs=97.4
Q ss_pred ccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhcccccc
Q 037699 35 LRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCIL 114 (203)
Q Consensus 35 L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 114 (203)
.+.++++++. +.. +|..+ .+++++|++++|.+++..+..+..+++|++|++++|.+....+..+.
T Consensus 9 ~~~l~~~~~~-----l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~------- 73 (177)
T 2o6r_A 9 GTEIRCNSKG-----LTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD------- 73 (177)
T ss_dssp TTEEECCSSC-----CSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT-------
T ss_pred CCEEEecCCC-----Ccc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHcc-------
Confidence 4567777774 333 34332 35789999999998865556678889999999999988765544443
Q ss_pred CCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCC
Q 037699 115 DGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVG 191 (203)
Q Consensus 115 ~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~ 191 (203)
.+++|+.|++++|.++ ..+...+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 74 -----------~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 74 -----------KLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp -----------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred -----------CCCccCEEECCCCCcc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6788999999999886 4444467788899999999999886555556778899999999999844
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=7e-16 Score=112.00 Aligned_cols=152 Identities=16% Similarity=0.192 Sum_probs=120.9
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (203)
+++.++++++.+++ ++ .+..+++|+.|++++|. +.. ++ .+..+++|++|++++|.+++. +. +..+++|+
T Consensus 20 ~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~-----i~~-l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~ 88 (263)
T 1xeu_A 20 NAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSN-----IQS-LA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLE 88 (263)
T ss_dssp HHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSC-----CCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCC
T ss_pred HHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCC-----ccc-ch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCC
Confidence 56677888888874 33 57789999999999995 443 34 678899999999999999854 44 89999999
Q ss_pred EEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccccc
Q 037699 90 SVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNV 169 (203)
Q Consensus 90 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 169 (203)
+|++++|.+..... .. . ++|+.|++++|.+.+ .+ .+..+++|+.|++++|.+++.
T Consensus 89 ~L~L~~N~l~~l~~--~~------------------~-~~L~~L~L~~N~l~~-~~--~l~~l~~L~~L~Ls~N~i~~~- 143 (263)
T 1xeu_A 89 ELSVNRNRLKNLNG--IP------------------S-ACLSRLFLDNNELRD-TD--SLIHLKNLEILSIRNNKLKSI- 143 (263)
T ss_dssp EEECCSSCCSCCTT--CC------------------C-SSCCEEECCSSCCSB-SG--GGTTCTTCCEEECTTSCCCBC-
T ss_pred EEECCCCccCCcCc--cc------------------c-CcccEEEccCCccCC-Ch--hhcCcccccEEECCCCcCCCC-
Confidence 99999998875321 00 2 789999999999964 33 578999999999999999864
Q ss_pred CCCCCCCCCccEEEcCCCCCCCCCCchhhhcc
Q 037699 170 SPDWIPPFQLKELNLESCNLVGNRFPSWLLSQ 201 (203)
Q Consensus 170 ~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~ 201 (203)
+.+..+++|++|++++|.+++. ..+..+
T Consensus 144 -~~l~~l~~L~~L~L~~N~i~~~---~~l~~l 171 (263)
T 1xeu_A 144 -VMLGFLSKLEVLDLHGNEITNT---GGLTRL 171 (263)
T ss_dssp -GGGGGCTTCCEEECTTSCCCBC---TTSTTC
T ss_pred -hHHccCCCCCEEECCCCcCcch---HHhccC
Confidence 3678899999999999999443 444444
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=3.4e-16 Score=118.65 Aligned_cols=172 Identities=22% Similarity=0.172 Sum_probs=123.3
Q ss_pred EEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccc----cccCCCC-CCCEEEccccccCccchhhhhcc--
Q 037699 13 FLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFS----SSVGNLT-SIQTLDLSFNNLEGKIATSFGRL-- 85 (203)
Q Consensus 13 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l-- 85 (203)
.+++++|.+++.+|..+....+|++|++++|. +....+ ..+..++ +|++|++++|.+++..+..+..+
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~ 76 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNN-----LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSC-----GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHH
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCC-----CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHh
Confidence 46788999998888777777789999999997 666555 6777888 89999999999997777777765
Q ss_pred ---CCccEEEccCCcCCcchhhhhhhccccccCCccccccccc---------------c-CCCCCEEEccCCccccccch
Q 037699 86 ---CKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEW---------------Q-LSSLDSVNLSNNTLFGSLFE 146 (203)
Q Consensus 86 ---~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~---------------~-~~~L~~L~l~~n~l~~~~~~ 146 (203)
++|++|++++|.+....+..+.........+++.+.+... . .++|+.|++++|.+.+....
T Consensus 77 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~ 156 (362)
T 3goz_A 77 AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD 156 (362)
T ss_dssp TSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH
T ss_pred ccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH
Confidence 8999999999999876655432211000133444433211 1 35899999999988643322
Q ss_pred ---hhhccCC-CccEEEccCCccccccCCC----CCCC-CCccEEEcCCCCC
Q 037699 147 ---IHFAKLS-KLKYFDVSQNSLTLNVSPD----WIPP-FQLKELNLESCNL 189 (203)
Q Consensus 147 ---~~l~~~~-~L~~L~l~~n~~~~~~~~~----l~~~-~~L~~L~l~~n~l 189 (203)
..+...+ +|+.|++++|.+++..+.. +... ++|++|+|++|.+
T Consensus 157 ~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i 208 (362)
T 3goz_A 157 ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL 208 (362)
T ss_dssp HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence 1334554 8999999999988654432 3334 4899999999998
No 117
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.62 E-value=3.2e-16 Score=122.17 Aligned_cols=162 Identities=15% Similarity=0.122 Sum_probs=65.9
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCC-------------CEEEccccccCc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSI-------------QTLDLSFNNLEG 76 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L-------------~~L~l~~~~~~~ 76 (203)
+|+.+++++|.+ +.+|..++++.+|++|++++|. +.+..|..++.+.+| +++++++|.+++
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~-----~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSE-----WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp -----------------------CCHHHHHHHHHH-----HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCc-----ccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 667777777776 4666667777777777776665 555556555554432 555555555542
Q ss_pred cchhhhhccCCccEEEccCCcCCcchhhhhh--------------------hccccccCCcccccccc-ccCCCCCEEEc
Q 037699 77 KIATSFGRLCKLRSVFLSHSNMNQEISKILN--------------------IFSTCILDGLEVLEMTE-WQLSSLDSVNL 135 (203)
Q Consensus 77 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--------------------~~~~~~~~~l~~l~~~~-~~~~~L~~L~l 135 (203)
+|. ..++|++|++++|.+.+. +.... .+....+.+...-.++. ..+++|+.|++
T Consensus 86 -lp~---~~~~L~~L~l~~n~l~~l-p~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l 160 (454)
T 1jl5_A 86 -LPE---LPPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDV 160 (454)
T ss_dssp -CCS---CCTTCSEEECCSSCCSSC-CCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEEC
T ss_pred -CCC---CcCCCCEEEccCCcCCcc-ccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEEC
Confidence 222 113444445544444431 11111 11111111111111111 14455566666
Q ss_pred cCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 136 SNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 136 ~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
++|.+. .++. ...+|+.|++++|.+++ ++ .+..+++|++|++++|.+
T Consensus 161 ~~N~l~-~lp~----~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l 207 (454)
T 1jl5_A 161 DNNSLK-KLPD----LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSL 207 (454)
T ss_dssp CSSCCS-CCCC----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC
T ss_pred CCCcCc-ccCC----CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcC
Confidence 665554 2322 12356666666666654 33 466666777777777776
No 118
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.62 E-value=3.4e-14 Score=114.42 Aligned_cols=64 Identities=34% Similarity=0.317 Sum_probs=36.1
Q ss_pred CCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhhccc
Q 037699 128 SSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLLSQK 202 (203)
Q Consensus 128 ~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~~~~ 202 (203)
++|+.|++++|.++ .++ ..+++|+.|++++|.++. ++. .+++|+.|++++|.+ ..+|..+..++
T Consensus 221 ~~L~~L~Ls~N~L~-~lp----~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L--~~lp~~l~~l~ 284 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP----VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQL--TRLPESLIHLS 284 (622)
T ss_dssp TTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC--CSCCGGGGGSC
T ss_pred CCCCEEEccCCccC-cCC----CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCC--CcCCHHHhhcc
Confidence 45666666666654 233 234566666666666652 332 345666666666666 35666665554
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=8.3e-15 Score=100.02 Aligned_cols=133 Identities=18% Similarity=0.123 Sum_probs=94.8
Q ss_pred ccCCcccEEecCCCccCCCCCccccCCC-CccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699 6 GLSDHLVFLDLSLNNFQGPIPRGLGNLT-SLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR 84 (203)
Q Consensus 6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 84 (203)
..+.+|+.|++++|.++ .++. +..+. +|++|++++|. +.+. ..+..+++|++|++++|.++...+..+..
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~-----l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 86 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNE-----IRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA 86 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSC-----CCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCC-----CCcc--cccccCCCCCEEECCCCcccccCcchhhc
Confidence 34558888999999888 4444 44444 88999999886 5443 56778888889999888888443344588
Q ss_pred cCCccEEEccCCcCCcchh-hhhhhccccccCCccccccccccCCCCCEEEccCCccccccchh---hhccCCCccEEEc
Q 037699 85 LCKLRSVFLSHSNMNQEIS-KILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEI---HFAKLSKLKYFDV 160 (203)
Q Consensus 85 l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~---~l~~~~~L~~L~l 160 (203)
+++|++|++++|.+..... ..+. .+++|+.|++++|.+. ..+.. .+..+++|+.|++
T Consensus 87 l~~L~~L~L~~N~i~~~~~~~~l~------------------~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 87 LPDLTELILTNNSLVELGDLDPLA------------------SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp CTTCCEEECCSCCCCCGGGGGGGG------------------GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred CCCCCEEECCCCcCCcchhhHhhh------------------cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCC
Confidence 8888888888888854332 1222 5678888888888885 44432 3677888888888
Q ss_pred cCCccc
Q 037699 161 SQNSLT 166 (203)
Q Consensus 161 ~~n~~~ 166 (203)
++|...
T Consensus 148 ~~n~~~ 153 (176)
T 1a9n_A 148 QKVKLK 153 (176)
T ss_dssp EECCHH
T ss_pred CcCCHH
Confidence 888765
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.61 E-value=1.3e-15 Score=124.82 Aligned_cols=163 Identities=21% Similarity=0.194 Sum_probs=82.5
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (203)
.++.+++.++.+.. .+..+-....|..+.+...... +......+..+..+..|+.|++++|.+. .+|..+..+++|+
T Consensus 174 ~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~-~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~ 250 (727)
T 4b8c_D 174 LTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDI-ENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLT 250 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCS
T ss_pred ccceEEeeCCCCCc-chhhHhhcCccCcccccCcccc-ccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCC
Confidence 46667777776663 3333333333333332221100 0012245666777778888888888877 6666666778888
Q ss_pred EEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccccc
Q 037699 90 SVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNV 169 (203)
Q Consensus 90 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 169 (203)
+|++++|.+. ..|..+. .+++|+.|++++|.++ .+|. .++.+++|+.|+|++|.++ .+
T Consensus 251 ~L~Ls~N~l~-~lp~~~~------------------~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~-~l 308 (727)
T 4b8c_D 251 RLYLNGNSLT-ELPAEIK------------------NLSNLRVLDLSHNRLT-SLPA-ELGSCFQLKYFYFFDNMVT-TL 308 (727)
T ss_dssp CCBCTTSCCS-CCCGGGG------------------GGTTCCEEECTTSCCS-SCCS-SGGGGTTCSEEECCSSCCC-CC
T ss_pred EEEeeCCcCc-ccChhhh------------------CCCCCCEEeCcCCcCC-ccCh-hhcCCCCCCEEECCCCCCC-cc
Confidence 8888888776 3333333 5677888888888875 5555 5677788888888888776 56
Q ss_pred CCCCCCCCCccEEEcCCCCCCCCCCchhh
Q 037699 170 SPDWIPPFQLKELNLESCNLVGNRFPSWL 198 (203)
Q Consensus 170 ~~~l~~~~~L~~L~l~~n~l~~~~~p~~~ 198 (203)
|..+..+++|++|+|++|.+ ...+|.++
T Consensus 309 p~~~~~l~~L~~L~L~~N~l-~~~~p~~~ 336 (727)
T 4b8c_D 309 PWEFGNLCNLQFLGVEGNPL-EKQFLKIL 336 (727)
T ss_dssp CSSTTSCTTCCCEECTTSCC-CSHHHHHH
T ss_pred ChhhhcCCCccEEeCCCCcc-CCCChHHH
Confidence 66677777888888888887 33445544
No 121
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.61 E-value=1e-17 Score=116.69 Aligned_cols=152 Identities=22% Similarity=0.226 Sum_probs=120.8
Q ss_pred CcccEEecCCCccCCCCCc------cccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhh
Q 037699 9 DHLVFLDLSLNNFQGPIPR------GLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSF 82 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 82 (203)
..++.++++.+.+.+..|. .+..+++|++|++++|. +.. +| .+..+++|++|++++|.++ .+|..+
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-----l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~ 89 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-----IEK-IS-SLSGMENLRILSLGRNLIK-KIENLD 89 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-----ESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-----Ccc-cc-ccccCCCCCEEECCCCCcc-cccchh
Confidence 4666677777777766665 88999999999999996 555 55 7888999999999999998 778888
Q ss_pred hccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccC
Q 037699 83 GRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQ 162 (203)
Q Consensus 83 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~ 162 (203)
..+++|++|++++|.+... + .+. .+++|+.|++++|.+.+......+..+++|+.|++++
T Consensus 90 ~~~~~L~~L~L~~N~l~~l-~-~~~------------------~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~ 149 (198)
T 1ds9_A 90 AVADTLEELWISYNQIASL-S-GIE------------------KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149 (198)
T ss_dssp HHHHHCSEEEEEEEECCCH-H-HHH------------------HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECS
T ss_pred hcCCcCCEEECcCCcCCcC-C-ccc------------------cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecC
Confidence 8889999999999998763 2 232 5678999999999996422223678899999999999
Q ss_pred CccccccCCC----------CCCCCCccEEEcCCCCCC
Q 037699 163 NSLTLNVSPD----------WIPPFQLKELNLESCNLV 190 (203)
Q Consensus 163 n~~~~~~~~~----------l~~~~~L~~L~l~~n~l~ 190 (203)
|.+++..+.. +..+++|+.|+ +|.++
T Consensus 150 N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 150 NPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp CHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 9998765542 66788999887 67764
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.60 E-value=4.9e-14 Score=109.82 Aligned_cols=77 Identities=23% Similarity=0.261 Sum_probs=40.6
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
++|+.|++++|.+++ +|.. +.+|++|++++|. +.+ ++.. .++|++|++++|.+++ +| .++.+++|
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~-----l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNN-----LKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSC-----CSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCc-----cCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 356666666666653 3332 2455555555553 222 1111 1356666666666653 44 36666666
Q ss_pred cEEEccCCcCCc
Q 037699 89 RSVFLSHSNMNQ 100 (203)
Q Consensus 89 ~~L~l~~n~~~~ 100 (203)
++|++++|.+.+
T Consensus 156 ~~L~l~~N~l~~ 167 (454)
T 1jl5_A 156 KIIDVDNNSLKK 167 (454)
T ss_dssp CEEECCSSCCSC
T ss_pred CEEECCCCcCcc
Confidence 666666666554
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=4.1e-16 Score=127.87 Aligned_cols=87 Identities=23% Similarity=0.274 Sum_probs=47.8
Q ss_pred cccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhc
Q 037699 5 FGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGR 84 (203)
Q Consensus 5 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 84 (203)
+...+.|+.|++++|.+. .+|..+..+.+|++|++++|. +. .+|..+..+++|++|++++|.++ .+|..++.
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~-----l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNS-----LT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSC-----CS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred hccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCc-----Cc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 344445556666666555 444444455566666666553 33 44555555556666666666655 45555555
Q ss_pred cCCccEEEccCCcCC
Q 037699 85 LCKLRSVFLSHSNMN 99 (203)
Q Consensus 85 l~~L~~L~l~~n~~~ 99 (203)
+++|++|++++|.+.
T Consensus 292 l~~L~~L~L~~N~l~ 306 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT 306 (727)
T ss_dssp GTTCSEEECCSSCCC
T ss_pred CCCCCEEECCCCCCC
Confidence 666666666655554
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=4.2e-15 Score=101.49 Aligned_cols=133 Identities=22% Similarity=0.283 Sum_probs=107.0
Q ss_pred cccCCCCccEEeCCCCcccccccccccccccCCCC-CCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhh
Q 037699 28 GLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLT-SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKIL 106 (203)
Q Consensus 28 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 106 (203)
.+..+.+|++|++++|. +.. ++. +..+. +|++|++++|.+++. ..+..+++|++|++++|.+....+..+
T Consensus 14 ~~~~~~~L~~L~l~~n~-----l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYK-----IPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp EEECTTSCEEEECTTSC-----CCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred hcCCcCCceEEEeeCCC-----Cch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchh
Confidence 45678899999999996 553 344 44444 999999999999843 678899999999999999987654443
Q ss_pred hhccccccCCccccccccccCCCCCEEEccCCccccccch-hhhccCCCccEEEccCCccccccCCC----CCCCCCccE
Q 037699 107 NIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFE-IHFAKLSKLKYFDVSQNSLTLNVSPD----WIPPFQLKE 181 (203)
Q Consensus 107 ~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~----l~~~~~L~~ 181 (203)
. .+++|+.|++++|.+. .++. ..+..+++|+.|++++|.++ .++.. +..+++|+.
T Consensus 85 ~------------------~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~ 144 (176)
T 1a9n_A 85 Q------------------ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRV 144 (176)
T ss_dssp H------------------HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSE
T ss_pred h------------------cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccce
Confidence 4 6789999999999995 4443 36788999999999999998 44553 778899999
Q ss_pred EEcCCCCC
Q 037699 182 LNLESCNL 189 (203)
Q Consensus 182 L~l~~n~l 189 (203)
|++++|.+
T Consensus 145 Ld~~~n~~ 152 (176)
T 1a9n_A 145 LDFQKVKL 152 (176)
T ss_dssp ETTEECCH
T ss_pred eCCCcCCH
Confidence 99999876
No 125
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=1.8e-14 Score=115.96 Aligned_cols=67 Identities=30% Similarity=0.182 Sum_probs=55.4
Q ss_pred cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCCCchhhh
Q 037699 126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNRFPSWLL 199 (203)
Q Consensus 126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~p~~~~ 199 (203)
.+++|+.|++++|.+. .++. .+++|+.|++++|.++ .+|..+..+++|+.|+|++|.++ ...|..+.
T Consensus 239 ~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~-~~~~~~l~ 305 (622)
T 3g06_A 239 LPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALR 305 (622)
T ss_dssp CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC-HHHHHHHH
T ss_pred CCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC-CcCHHHHH
Confidence 4678999999999996 5554 6789999999999999 67888899999999999999993 44455444
No 126
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.56 E-value=1.2e-15 Score=118.93 Aligned_cols=89 Identities=24% Similarity=0.287 Sum_probs=43.2
Q ss_pred cCCcccEEecCCCccCCCCCccc-cCCC----CccEEeCCCCccccccccc----ccccccCCCCCCCEEEccccccCcc
Q 037699 7 LSDHLVFLDLSLNNFQGPIPRGL-GNLT----SLRYLDLSANISILQYLSG----TFSSSVGNLTSIQTLDLSFNNLEGK 77 (203)
Q Consensus 7 ~~~~L~~L~l~~~~~~~~~~~~~-~~l~----~L~~L~l~~~~~~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~ 77 (203)
.+++|++|++++|.+++..+..+ ..+. +|++|++++|. +.. .++..+..+++|++|++++|.+++.
T Consensus 54 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-----i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 54 VNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-----LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp TCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-----CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred hCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-----CCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 34566666666666543222222 1222 46666666664 332 3355555566666666666655433
Q ss_pred chhhhhc-----cCCccEEEccCCcCCc
Q 037699 78 IATSFGR-----LCKLRSVFLSHSNMNQ 100 (203)
Q Consensus 78 ~~~~~~~-----l~~L~~L~l~~n~~~~ 100 (203)
.+..+.. .++|++|++++|.+..
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 2222221 2345555555555543
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=1.9e-14 Score=108.54 Aligned_cols=183 Identities=20% Similarity=0.129 Sum_probs=121.0
Q ss_pred cccccCCcccEEecCCCccCCCCC-ccccCCCCccE-EeCCCCcccccccccccccccCCCCCCCEEEccccccCccchh
Q 037699 3 WVFGLSDHLVFLDLSLNNFQGPIP-RGLGNLTSLRY-LDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIAT 80 (203)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~-L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 80 (203)
..|..+++|++|++++|.+.+.++ .+|.+++++++ +.+..|. +....+..+..+++|+++++++|.++...+.
T Consensus 48 ~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~-----l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~ 122 (350)
T 4ay9_X 48 GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN-----LLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122 (350)
T ss_dssp TSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT-----CCEECTTSBCCCTTCCEEEEEEECCSSCCCC
T ss_pred HHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc-----ccccCchhhhhccccccccccccccccCCch
Confidence 367778899999999999865444 57788988776 5555665 7777788899999999999999999855555
Q ss_pred hhhccCCccEEEccC-CcCCcchhhhhhhc----cccccCC--ccccccccccCCCCCEEEccCCccccccchhhhccCC
Q 037699 81 SFGRLCKLRSVFLSH-SNMNQEISKILNIF----STCILDG--LEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLS 153 (203)
Q Consensus 81 ~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~----~~~~~~~--l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~ 153 (203)
.+....++..+++.+ +.+.......+... ....+.+ ++.+........+++.+++.++...+.++...|..++
T Consensus 123 ~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~ 202 (350)
T 4ay9_X 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202 (350)
T ss_dssp TTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred hhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCc
Confidence 566667788888865 44544333322211 1111222 2222222335567889999764433577776788999
Q ss_pred CccEEEccCCccccccCCCCCCCCCccEEEcCCC-CCCCCCCc
Q 037699 154 KLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESC-NLVGNRFP 195 (203)
Q Consensus 154 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~p 195 (203)
+|+.|++++|+++...+..+ .+|+.|.+.++ .+ ..+|
T Consensus 203 ~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l--~~lP 240 (350)
T 4ay9_X 203 GPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNL--KKLP 240 (350)
T ss_dssp CCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTC--CCCC
T ss_pred ccchhhcCCCCcCccChhhh---ccchHhhhccCCCc--CcCC
Confidence 99999999999985433333 34555554443 33 4455
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=2.3e-13 Score=108.63 Aligned_cols=122 Identities=20% Similarity=0.220 Sum_probs=89.7
Q ss_pred CccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccc
Q 037699 34 SLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCI 113 (203)
Q Consensus 34 ~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 113 (203)
.|+.|++++|. +.+ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+.+. | .+.
T Consensus 442 ~L~~L~Ls~n~-----l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p-~l~------ 505 (567)
T 1dce_A 442 DVRVLHLAHKD-----LTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVA------ 505 (567)
T ss_dssp TCSEEECTTSC-----CSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGT------
T ss_pred CceEEEecCCC-----CCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC-c-ccC------
Confidence 47788888885 444 455 778888888888888888 7788888888888888888888753 2 222
Q ss_pred cCCccccccccccCCCCCEEEccCCcccccc-chhhhccCCCccEEEccCCccccccCCC---CCCCCCccEEEc
Q 037699 114 LDGLEVLEMTEWQLSSLDSVNLSNNTLFGSL-FEIHFAKLSKLKYFDVSQNSLTLNVSPD---WIPPFQLKELNL 184 (203)
Q Consensus 114 ~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~---l~~~~~L~~L~l 184 (203)
.+++|+.|++++|.+++.. |. .++.+++|+.|++++|.+++.++.. +..+++|+.|++
T Consensus 506 ------------~l~~L~~L~Ls~N~l~~~~~p~-~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 506 ------------NLPRLQELLLCNNRLQQSAAIQ-PLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ------------TCSSCCEEECCSSCCCSSSTTG-GGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ------------CCCCCcEEECCCCCCCCCCCcH-HHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 5778888888888886443 44 6788888999999999888644321 123677888764
No 129
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.49 E-value=2.5e-13 Score=92.51 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=54.2
Q ss_pred cEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccC
Q 037699 36 RYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILD 115 (203)
Q Consensus 36 ~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 115 (203)
+.++++++. + ..+|..+. ++|++|++++|.+++..|..+..+++|++|++++|.+....+..+.
T Consensus 15 ~~l~~~~n~-----l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-------- 78 (174)
T 2r9u_A 15 TLVNCQNIR-----L-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD-------- 78 (174)
T ss_dssp SEEECCSSC-----C-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--------
T ss_pred cEEEeCCCC-----C-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC--------
Confidence 566666663 2 33444332 5666666666666655555566666666666666655543332222
Q ss_pred CccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccc
Q 037699 116 GLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166 (203)
Q Consensus 116 ~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~ 166 (203)
.+++|+.|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus 79 ----------~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 79 ----------KLTQLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ----------TCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ----------CcchhhEEECCCCccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence 3445555555555553 233323445555555555555544
No 130
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=3.4e-13 Score=91.49 Aligned_cols=58 Identities=22% Similarity=0.238 Sum_probs=30.5
Q ss_pred ccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCc
Q 037699 35 LRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQ 100 (203)
Q Consensus 35 L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 100 (203)
.+.++++++. +. .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|.+..
T Consensus 11 ~~~l~~s~n~-----l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 68 (170)
T 3g39_A 11 GTTVDCSGKS-----LA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV 68 (170)
T ss_dssp TTEEECTTSC-----CS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC
T ss_pred CCEEEeCCCC-----cC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc
Confidence 3556666663 22 234333 2456666666666654445555555555555555555544
No 131
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.48 E-value=1.1e-15 Score=116.07 Aligned_cols=162 Identities=15% Similarity=0.094 Sum_probs=106.0
Q ss_pred CcccEEecCCCccCCCCCccccC-----CCCccEEeCCCCccccccccccccccc-CCCCCCCEEEccccccCccchhhh
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGN-----LTSLRYLDLSANISILQYLSGTFSSSV-GNLTSIQTLDLSFNNLEGKIATSF 82 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~-----l~~L~~L~l~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~ 82 (203)
++++.+++++|.++......+.. ..+|++|++++|. +.......+ ..+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-----l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L 146 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-----LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDL 146 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-----CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-----CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHH
Confidence 47889999999887543333322 2689999999986 433222222 234578899999998875443333
Q ss_pred h-----ccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccc---hhhhccCCC
Q 037699 83 G-----RLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLF---EIHFAKLSK 154 (203)
Q Consensus 83 ~-----~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~---~~~l~~~~~ 154 (203)
. ..++|++|++++|.+.......+..... ..++|++|++++|.+.+... ...+...+.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~--------------~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~ 212 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA--------------GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ 212 (372)
T ss_dssp HHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH--------------TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred HHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh--------------cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence 2 3577999999999886544333211000 46778899999988864321 124566778
Q ss_pred ccEEEccCCcccccc----CCCCCCCCCccEEEcCCCCC
Q 037699 155 LKYFDVSQNSLTLNV----SPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 155 L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~l 189 (203)
|+.|++++|.++... ...+...++|++|+|++|.|
T Consensus 213 L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 213 LQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp CCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred cCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 999999999887532 22334467889999999988
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.47 E-value=7.4e-13 Score=89.81 Aligned_cols=108 Identities=24% Similarity=0.258 Sum_probs=91.1
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (203)
..+.++++++.++ .+|..+ ..++++|++++|. +....+..+..+++|++|++++|.++...+..|..+++|+
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~-----i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~ 81 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQ-----ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLT 81 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSC-----CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCc-----CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCC
Confidence 5678999999998 566655 3889999999997 7888788899999999999999999966666688999999
Q ss_pred EEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccc
Q 037699 90 SVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGS 143 (203)
Q Consensus 90 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~ 143 (203)
+|++++|.+....+..+. .+++|+.|++++|.+...
T Consensus 82 ~L~L~~N~l~~~~~~~~~------------------~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 82 QLSLNDNQLKSIPRGAFD------------------NLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp EEECCSSCCCCCCTTTTT------------------TCTTCCEEECCSSCBCTT
T ss_pred EEECCCCccCEeCHHHhc------------------CCCCCCEEEeCCCCCCCC
Confidence 999999999876665554 678999999999988643
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=1.1e-12 Score=104.77 Aligned_cols=137 Identities=23% Similarity=0.293 Sum_probs=105.0
Q ss_pred CCCccccCCCCccEEe-CCCCccccccccccccc------ccCC--CCCCCEEEccccccCccchhhhhccCCccEEEcc
Q 037699 24 PIPRGLGNLTSLRYLD-LSANISILQYLSGTFSS------SVGN--LTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLS 94 (203)
Q Consensus 24 ~~~~~~~~l~~L~~L~-l~~~~~~~~~~~~~~~~------~l~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 94 (203)
..|..++.+.+|+.|+ ++.|. ... ++. .+.. ...|+.|++++|.++ .+|. ++.+++|+.|+++
T Consensus 400 ~~~~~l~~l~~L~~L~~l~~n~-----~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls 471 (567)
T 1dce_A 400 YEKETLQYFSTLKAVDPMRAAY-----LDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLS 471 (567)
T ss_dssp GHHHHHHHHHHHHHHCGGGHHH-----HHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC-GGGGTTCCEEECC
T ss_pred CCHHHHHHHHhcccCcchhhcc-----cch-hhhhhhhcccccccCccCceEEEecCCCCC-CCcC-ccccccCcEeecC
Confidence 4455667778888887 45442 110 000 0110 125899999999998 4676 9999999999999
Q ss_pred CCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCcccccc-CCCC
Q 037699 95 HSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNV-SPDW 173 (203)
Q Consensus 95 ~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~l 173 (203)
+|.+.. .|..+. .+++|+.|++++|.+++ +| .++.+++|+.|++++|.+++.. |..+
T Consensus 472 ~N~l~~-lp~~~~------------------~l~~L~~L~Ls~N~l~~-lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l 529 (567)
T 1dce_A 472 HNRLRA-LPPALA------------------ALRCLEVLQASDNALEN-VD--GVANLPRLQELLLCNNRLQQSAAIQPL 529 (567)
T ss_dssp SSCCCC-CCGGGG------------------GCTTCCEEECCSSCCCC-CG--GGTTCSSCCEEECCSSCCCSSSTTGGG
T ss_pred cccccc-cchhhh------------------cCCCCCEEECCCCCCCC-Cc--ccCCCCCCcEEECCCCCCCCCCCcHHH
Confidence 999884 344443 68899999999999974 55 6889999999999999999776 8889
Q ss_pred CCCCCccEEEcCCCCCC
Q 037699 174 IPPFQLKELNLESCNLV 190 (203)
Q Consensus 174 ~~~~~L~~L~l~~n~l~ 190 (203)
..+++|+.|+|++|.++
T Consensus 530 ~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 530 VSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp GGCTTCCEEECTTSGGG
T ss_pred hcCCCCCEEEecCCcCC
Confidence 99999999999999993
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.44 E-value=1.4e-12 Score=88.72 Aligned_cols=105 Identities=20% Similarity=0.251 Sum_probs=88.1
Q ss_pred ccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccE
Q 037699 11 LVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRS 90 (203)
Q Consensus 11 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 90 (203)
-+.++++++.++ .+|..+. .+|++|++++|. +.+..|..+..+++|++|++++|.+++..+..|..+++|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~-----l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQ-----ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSC-----CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCC-----ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence 468999999987 6676654 889999999997 77777888999999999999999999655556789999999
Q ss_pred EEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccc
Q 037699 91 VFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLF 141 (203)
Q Consensus 91 L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~ 141 (203)
|++++|.+....+..+. .+++|+.|++++|.+.
T Consensus 86 L~L~~N~l~~l~~~~~~------------------~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFD------------------NLKSLTHIYLYNNPWD 118 (174)
T ss_dssp EECCSSCCCCCCTTTTT------------------TCTTCSEEECCSSCBC
T ss_pred EECCCCccceeCHHHhc------------------cccCCCEEEeCCCCcc
Confidence 99999999876554444 6789999999999885
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.44 E-value=4e-15 Score=103.53 Aligned_cols=133 Identities=23% Similarity=0.363 Sum_probs=107.1
Q ss_pred ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhh
Q 037699 4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFG 83 (203)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 83 (203)
.+..+++|+.|++++|.+++ +| .+..+++|++|++++|. +. .+|..+..+++|++|++++|.+++ +| .+.
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~-----l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNL-----IK-KIENLDAVADTLEELWISYNQIAS-LS-GIE 112 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEE-----EC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCC-----cc-cccchhhcCCcCCEEECcCCcCCc-CC-ccc
Confidence 56667799999999999985 66 88899999999999996 44 467777777899999999999984 55 688
Q ss_pred ccCCccEEEccCCcCCcchh-hhhhhccccccCCccccccccccCCCCCEEEccCCccccccch---------hhhccCC
Q 037699 84 RLCKLRSVFLSHSNMNQEIS-KILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFE---------IHFAKLS 153 (203)
Q Consensus 84 ~l~~L~~L~l~~n~~~~~~~-~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~---------~~l~~~~ 153 (203)
.+++|++|++++|.+..... ..+. .+++|+.|++++|.+.+..+. ..+..++
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~------------------~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~ 174 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLA------------------ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHT------------------TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCS
T ss_pred cCCCCCEEECCCCcCCchhHHHHHh------------------cCCCCCEEEecCCccccccccccchHHHHHHHHHhCC
Confidence 99999999999999886443 2333 678999999999998654322 2367899
Q ss_pred CccEEEccCCccc
Q 037699 154 KLKYFDVSQNSLT 166 (203)
Q Consensus 154 ~L~~L~l~~n~~~ 166 (203)
+|+.|| ++.++
T Consensus 175 ~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 175 NLKKLD--GMPVD 185 (198)
T ss_dssp SCSEEC--CGGGT
T ss_pred CcEEEC--CcccC
Confidence 999987 66665
No 136
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.42 E-value=9.7e-15 Score=117.20 Aligned_cols=70 Identities=6% Similarity=-0.132 Sum_probs=50.6
Q ss_pred cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCC-CCCCCCCccEEEcCCCCCCCCCCc
Q 037699 126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSP-DWIPPFQLKELNLESCNLVGNRFP 195 (203)
Q Consensus 126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~p 195 (203)
.+++|+.|++++|.+++......+..+++|+.|++++|.++..... ....+++|++|++++|++++..+.
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~ 531 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQD 531 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTT
T ss_pred hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHH
Confidence 3678888998888886544343567788999999999987644222 234578899999999998655443
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.39 E-value=3.2e-14 Score=114.19 Aligned_cols=62 Identities=11% Similarity=0.029 Sum_probs=39.5
Q ss_pred cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCC-CCCCccEEEcCCC
Q 037699 126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWI-PPFQLKELNLESC 187 (203)
Q Consensus 126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n 187 (203)
.+++|+.|++++|.+++.........+++|+.|++++|+++......+. .++.+....+..+
T Consensus 486 ~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 486 GCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred cCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 5677888888888875443333455678888888888887755433332 4555555555443
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.35 E-value=1.3e-11 Score=92.24 Aligned_cols=155 Identities=14% Similarity=0.134 Sum_probs=104.1
Q ss_pred CCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEcccccc-------C-----
Q 037699 8 SDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNL-------E----- 75 (203)
Q Consensus 8 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-------~----- 75 (203)
+.+|+.+++.+ .++.....+|..+.+|+.+++.+|. +....+..|..+.++..+....... .
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-----i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-----APNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-----CCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-----ccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 67888888888 6765666778888889988888886 5566666666666666665443111 0
Q ss_pred --------------ccchhh---------------------------h-hccCCccEEEccCCcCCcchhhhhhhccccc
Q 037699 76 --------------GKIATS---------------------------F-GRLCKLRSVFLSHSNMNQEISKILNIFSTCI 113 (203)
Q Consensus 76 --------------~~~~~~---------------------------~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 113 (203)
+.++.. + ..+++|+.+++.+|.+.......+.
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~------ 247 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFA------ 247 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTT------
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhh------
Confidence 000000 0 1255666677666666554444443
Q ss_pred cCCccccccccccCCCCCEEEccCCccccccchhhhccCCCcc-EEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 114 LDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLK-YFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 114 ~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~-~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
.+.+|+.+++..| + ..++..+|.++.+|+ .+++.. .++......+..+++|+.+++.+|.+
T Consensus 248 ------------~~~~L~~l~l~~n-i-~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 248 ------------QKKYLLKIKLPHN-L-KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp ------------TCTTCCEEECCTT-C-CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred ------------CCCCCCEEECCcc-c-ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence 6778888888887 5 356666788888888 888887 56655567788888899999888877
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=9.2e-12 Score=93.71 Aligned_cols=92 Identities=22% Similarity=0.194 Sum_probs=45.7
Q ss_pred cccccCCCCCCCEEEccc-cccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCE
Q 037699 54 FSSSVGNLTSIQTLDLSF-NNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDS 132 (203)
Q Consensus 54 ~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~ 132 (203)
+|. +..+.+|++|++++ |.+++..+..|..+++|++|++++|.+.+..+..+. .+++|+.
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~------------------~l~~L~~ 84 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFH------------------FTPRLSR 84 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGG------------------SCSCCCE
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhc------------------CCcCCCE
Confidence 444 55555666666653 555544444555555555555555555544443333 3445555
Q ss_pred EEccCCccccccchhhhccCCCccEEEccCCccc
Q 037699 133 VNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLT 166 (203)
Q Consensus 133 L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~ 166 (203)
|+|++|.+. .++...+..++ |+.|++.+|.+.
T Consensus 85 L~l~~N~l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 85 LNLSFNALE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp EECCSSCCS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred EeCCCCccc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 555555553 23322333333 555555555444
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.30 E-value=1.2e-11 Score=93.12 Aligned_cols=104 Identities=19% Similarity=0.164 Sum_probs=85.9
Q ss_pred cEEecCCC-ccCCCCCccccCCCCccEEeCCC-CcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCcc
Q 037699 12 VFLDLSLN-NFQGPIPRGLGNLTSLRYLDLSA-NISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLR 89 (203)
Q Consensus 12 ~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 89 (203)
..++++++ .++ .+|. +..+.+|++|++++ |. +....+..+..+++|++|++++|.+++..+..|..+++|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~-----l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~ 83 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQH-----LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSS-----CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCC-----CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCC
Confidence 45788888 787 5777 99999999999996 86 7777778899999999999999999977788899999999
Q ss_pred EEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccc
Q 037699 90 SVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLF 141 (203)
Q Consensus 90 ~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~ 141 (203)
+|++++|.+....+..+. .++ |+.|++.+|.+.
T Consensus 84 ~L~l~~N~l~~~~~~~~~------------------~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 84 RLNLSFNALESLSWKTVQ------------------GLS-LQELVLSGNPLH 116 (347)
T ss_dssp EEECCSSCCSCCCSTTTC------------------SCC-CCEEECCSSCCC
T ss_pred EEeCCCCccceeCHHHcc------------------cCC-ceEEEeeCCCcc
Confidence 999999998865554443 233 899999999885
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.26 E-value=1.1e-13 Score=111.11 Aligned_cols=63 Identities=6% Similarity=0.058 Sum_probs=45.1
Q ss_pred CCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCC-CCCCCCCccEEEcCCCCC
Q 037699 127 LSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSP-DWIPPFQLKELNLESCNL 189 (203)
Q Consensus 127 ~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~l 189 (203)
+++|+.|++++|.+++.........+++|+.|++++|.+++.... ....+++|++|++++|.+
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 677888888888876544443336688888888888888644333 334577888888888887
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.23 E-value=1.5e-10 Score=86.55 Aligned_cols=161 Identities=14% Similarity=0.165 Sum_probs=119.6
Q ss_pred cccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccc--cccc-------------------ccc-------
Q 037699 3 WVFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISIL--QYLS-------------------GTF------- 54 (203)
Q Consensus 3 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~-------------------~~~------- 54 (203)
..|..+++|+.+++.+|.+....+.+|..+.++..+......... ..+. +.+
T Consensus 118 ~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~ 197 (329)
T 3sb4_A 118 AAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKA 197 (329)
T ss_dssp TTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHT
T ss_pred HHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhc
Confidence 367788899999999999876777888888888877766531000 0000 000
Q ss_pred ---ccc-----------------c-CCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhhhhccccc
Q 037699 55 ---SSS-----------------V-GNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCI 113 (203)
Q Consensus 55 ---~~~-----------------l-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 113 (203)
+.. + ..+++|+.++++.|.++......|..+.+|+.+++..| +.......+.
T Consensus 198 ~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~------ 270 (329)
T 3sb4_A 198 GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS------ 270 (329)
T ss_dssp TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT------
T ss_pred ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh------
Confidence 000 0 02679999999999998555667999999999999987 6555555554
Q ss_pred cCCccccccccccCCCCC-EEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEc
Q 037699 114 LDGLEVLEMTEWQLSSLD-SVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNL 184 (203)
Q Consensus 114 ~~~l~~l~~~~~~~~~L~-~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 184 (203)
.+.+|+ .+.+.. .+. .++..+|.+|++|+.++++.|.++......+..+++|+.++.
T Consensus 271 ------------~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 271 ------------NCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ------------TCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ------------CChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 678899 999988 553 566668999999999999999998777778999999998863
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=3.3e-12 Score=96.99 Aligned_cols=161 Identities=17% Similarity=0.108 Sum_probs=108.2
Q ss_pred CcccEEecCCCccCCCCCccc-cCCCCccEEeCCCCccccccccccccccc-----CCCCCCCEEEccccccCc----cc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGL-GNLTSLRYLDLSANISILQYLSGTFSSSV-----GNLTSIQTLDLSFNNLEG----KI 78 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~----~~ 78 (203)
++|+.|++++|.++......+ ..+.+|++|++++|. +.+.....+ ...++|++|++++|.++. .+
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-----l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l 175 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-----LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVL 175 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-----CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-----CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHH
Confidence 589999999999874333222 345789999999996 544333332 356789999999999974 34
Q ss_pred hhhhhccCCccEEEccCCcCCcchhhhhh-hccccccCCccccccccccCCCCCEEEccCCccccccch---hhhccCCC
Q 037699 79 ATSFGRLCKLRSVFLSHSNMNQEISKILN-IFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFE---IHFAKLSK 154 (203)
Q Consensus 79 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~---~~l~~~~~ 154 (203)
+..+..+++|++|++++|.+.+.....+. .+. ..++|+.|++++|.+++.... ..+...+.
T Consensus 176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~---------------~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~ 240 (372)
T 3un9_A 176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD---------------RNRQLQELNVAYNGAGDTAALALARAAREHPS 240 (372)
T ss_dssp HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG---------------GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSS
T ss_pred HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh---------------cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCC
Confidence 45567789999999999998765443322 111 457899999999999653222 23456789
Q ss_pred ccEEEccCCccccccCCCCC---CCC--CccEEE--cCCCCC
Q 037699 155 LKYFDVSQNSLTLNVSPDWI---PPF--QLKELN--LESCNL 189 (203)
Q Consensus 155 L~~L~l~~n~~~~~~~~~l~---~~~--~L~~L~--l~~n~l 189 (203)
|+.|++++|.++......+. ... .++.+. +..+.+
T Consensus 241 L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 241 LELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp CCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred CCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 99999999999854332222 122 267776 666655
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.21 E-value=7.1e-13 Score=106.37 Aligned_cols=37 Identities=14% Similarity=-0.014 Sum_probs=17.2
Q ss_pred cCCCccEEEccCCccccccC-CCCCCCCCccEEEcCCC
Q 037699 151 KLSKLKYFDVSQNSLTLNVS-PDWIPPFQLKELNLESC 187 (203)
Q Consensus 151 ~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n 187 (203)
.+++|+.|++++|.++.... ..+..+++|++|++++|
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 324 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence 34555555555555443211 11234455555555554
No 145
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.06 E-value=2.8e-10 Score=86.01 Aligned_cols=163 Identities=14% Similarity=0.133 Sum_probs=102.3
Q ss_pred cCCcccEEecCCCccC---------CCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCcc
Q 037699 7 LSDHLVFLDLSLNNFQ---------GPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGK 77 (203)
Q Consensus 7 ~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 77 (203)
.+++|+.|.+.+.... ..+...+..+++|+.|.++++. .. .++. + .+++|++|++..|.+...
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~-----~l-~l~~-~-~~~~L~~L~L~~~~l~~~ 208 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN-----NL-SIGK-K-PRPNLKSLEIISGGLPDS 208 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB-----TC-BCCS-C-BCTTCSEEEEECSBCCHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC-----Cc-eecc-c-cCCCCcEEEEecCCCChH
Confidence 3458899988765321 1233445677899999998873 12 2233 3 378899999998888754
Q ss_pred chhhhh--ccCCccEEEccCC--cCCcc-hhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhh--c
Q 037699 78 IATSFG--RLCKLRSVFLSHS--NMNQE-ISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHF--A 150 (203)
Q Consensus 78 ~~~~~~--~l~~L~~L~l~~n--~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l--~ 150 (203)
....+. .+++|++|+++.+ ..... ....+... +....+++|+.|++.+|.+.+......+ .
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~------------l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~ 276 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL------------FSKDRFPNLKWLGIVDAEEQNVVVEMFLESD 276 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG------------SCTTTCTTCCEEEEESCTTHHHHHHHHHHCS
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH------------HhcCCCCCcCEEeCCCCCCchHHHHHHHhCc
Confidence 444444 6899999988532 11110 01001000 0011468899999998888643332122 2
Q ss_pred cCCCccEEEccCCccccc----cCCCCCCCCCccEEEcCCCCC
Q 037699 151 KLSKLKYFDVSQNSLTLN----VSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 151 ~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l 189 (203)
.+++|++|+++.|.++.. ++..+..+++|+.|++++|.+
T Consensus 277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 577899999999988753 233334567899999999888
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.05 E-value=7.4e-09 Score=79.38 Aligned_cols=60 Identities=13% Similarity=0.115 Sum_probs=38.0
Q ss_pred cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCCCC
Q 037699 126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l 189 (203)
.+++|+.+.+.. .+. .+...+|.+|.+|+.+.+..+ ++......+..+ +|+.+.+.+|.+
T Consensus 298 ~c~~L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 298 GCPKLARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp TCTTCCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred CCccCCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 456677777763 342 455556777777777777544 443444566666 777777777765
No 147
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.92 E-value=2e-09 Score=73.78 Aligned_cols=121 Identities=14% Similarity=0.089 Sum_probs=59.5
Q ss_pred ccccCCCCCCCEEEcccc-ccCcc----chhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCC
Q 037699 55 SSSVGNLTSIQTLDLSFN-NLEGK----IATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSS 129 (203)
Q Consensus 55 ~~~l~~~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 129 (203)
...+...+.|++|++++| .+... +...+...+.|++|++++|.+.......+..... ..++
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~--------------~n~~ 94 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLK--------------VNNT 94 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHH--------------HCSS
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHH--------------hCCC
Confidence 334445555666666665 55422 2333444455666666666655433322211000 2345
Q ss_pred CCEEEccCCccccccc---hhhhccCCCccEEEc--cCCcccccc----CCCCCCCCCccEEEcCCCCC
Q 037699 130 LDSVNLSNNTLFGSLF---EIHFAKLSKLKYFDV--SQNSLTLNV----SPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 130 L~~L~l~~n~l~~~~~---~~~l~~~~~L~~L~l--~~n~~~~~~----~~~l~~~~~L~~L~l~~n~l 189 (203)
|+.|++++|.+.+... ...+...+.|+.|++ ++|.++... ...+...++|++|+|++|.+
T Consensus 95 L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 95 LKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred cCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 6666666666643211 113444556666666 556665321 22233345666666666665
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.90 E-value=8.5e-10 Score=75.66 Aligned_cols=126 Identities=12% Similarity=-0.009 Sum_probs=90.9
Q ss_pred ccccCCCCccEEeCCCC-cccccccccccccccCCCCCCCEEEccccccCcc----chhhhhccCCccEEEccCCcCCcc
Q 037699 27 RGLGNLTSLRYLDLSAN-ISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGK----IATSFGRLCKLRSVFLSHSNMNQE 101 (203)
Q Consensus 27 ~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~ 101 (203)
..+...+.|++|++++| .+.. .....+...+...++|++|++++|.+... +...+...+.|++|++++|.+...
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~-~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPV-PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCH-HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHhcCCCCCEEEecCCCCCCH-HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 34567889999999998 6211 11233556677788999999999999843 345566678999999999999876
Q ss_pred hhhhhhhccccccCCccccccccccCCCCCEEEc--cCCccccccc---hhhhccCCCccEEEccCCcccc
Q 037699 102 ISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNL--SNNTLFGSLF---EIHFAKLSKLKYFDVSQNSLTL 167 (203)
Q Consensus 102 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l--~~n~l~~~~~---~~~l~~~~~L~~L~l~~n~~~~ 167 (203)
....+..... ..++|+.|++ ++|.+.+... ...+...+.|+.|++++|.+..
T Consensus 109 g~~~l~~~L~--------------~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 109 GILALVEALQ--------------SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHGGG--------------GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHH--------------hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 5444321110 4578999999 8899964432 2245667899999999998863
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.87 E-value=6.5e-08 Score=74.16 Aligned_cols=61 Identities=13% Similarity=0.111 Sum_probs=40.1
Q ss_pred cCCCCCEEEccCCccc----cccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCC
Q 037699 126 QLSSLDSVNLSNNTLF----GSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESC 187 (203)
Q Consensus 126 ~~~~L~~L~l~~n~l~----~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 187 (203)
.+++|+.+.+.++... ..++..+|.+|++|+.+.+.. .++......+..+.+|+.+.|..+
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc
Confidence 5667777777776542 124445677778888888774 355444556777778888887554
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=2.7e-09 Score=80.59 Aligned_cols=158 Identities=15% Similarity=0.185 Sum_probs=101.5
Q ss_pred ccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCccccccccccccccc--CCCCCCCEEEcccc--ccCc-----
Q 037699 6 GLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSV--GNLTSIQTLDLSFN--NLEG----- 76 (203)
Q Consensus 6 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~--~~~~----- 76 (203)
..+++|+.|.++++.-. .++. + .+++|++|++..+. +.......+ ..+++|++|+++.+ ...+
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~-----l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG-----LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB-----CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred hcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC-----CChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 45679999999988311 2333 3 38899999999885 433322333 36889999998632 2111
Q ss_pred cchhhh--hccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchh---hhcc
Q 037699 77 KIATSF--GRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEI---HFAK 151 (203)
Q Consensus 77 ~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~---~l~~ 151 (203)
.+...+ ..+++|++|++.+|.+.......+... ..+++|+.|+++.|.+.+..... .+..
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a---------------~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~ 305 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLES---------------DILPQLETMDISAGVLTDEGARLLLDHVDK 305 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHC---------------SSGGGCSEEECCSSCCBHHHHHHHHTTHHH
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhC---------------ccCCCCCEEECCCCCCChHHHHHHHhhccc
Confidence 111222 357899999999998875443333210 04678999999999986543221 2356
Q ss_pred CCCccEEEccCCccccccCCCCCC-CCCccEEEcCCCC
Q 037699 152 LSKLKYFDVSQNSLTLNVSPDWIP-PFQLKELNLESCN 188 (203)
Q Consensus 152 ~~~L~~L~l~~n~~~~~~~~~l~~-~~~L~~L~l~~n~ 188 (203)
+++|+.|++++|.++......+.. + ..+++++.+.
T Consensus 306 l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 306 IKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 789999999999988543333322 2 3567888775
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.70 E-value=9.2e-09 Score=69.35 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=63.5
Q ss_pred cccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCC----CCCCEEEccccc-cCccchhhhhc
Q 037699 10 HLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNL----TSIQTLDLSFNN-LEGKIATSFGR 84 (203)
Q Consensus 10 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~----~~L~~L~l~~~~-~~~~~~~~~~~ 84 (203)
+|+.||+++|.++...-..+..+++|++|++++|. .+++..-..+..+ ++|++|++++|. +++..-..+..
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~----~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH----YIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT----TCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC----ccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 78999999998887666677888999999999885 2444333444443 368999999885 77655566778
Q ss_pred cCCccEEEccCCcC
Q 037699 85 LCKLRSVFLSHSNM 98 (203)
Q Consensus 85 l~~L~~L~l~~n~~ 98 (203)
+++|++|+++++.-
T Consensus 138 ~~~L~~L~L~~c~~ 151 (176)
T 3e4g_A 138 FRNLKYLFLSDLPG 151 (176)
T ss_dssp CTTCCEEEEESCTT
T ss_pred CCCCCEEECCCCCC
Confidence 89999999988753
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.60 E-value=8e-08 Score=64.75 Aligned_cols=88 Identities=13% Similarity=0.093 Sum_probs=45.7
Q ss_pred CCCCEEEccccccCccchhhhhccCCccEEEccCCc-CCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCc-
Q 037699 62 TSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSN-MNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNT- 139 (203)
Q Consensus 62 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~- 139 (203)
..|+.|++++|.+++..-..+..+++|++|++++|. +++.....++.... ..++|++|++++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~--------------~~~~L~~L~Ls~C~~ 126 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLEN--------------LQKSMLEMEIISCGN 126 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHH--------------HHHHCCEEEEESCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhccc--------------ccCCCCEEEcCCCCc
Confidence 356666666666664444445566666666666664 44333333221000 01346666666653
Q ss_pred cccccchhhhccCCCccEEEccCCc
Q 037699 140 LFGSLFEIHFAKLSKLKYFDVSQNS 164 (203)
Q Consensus 140 l~~~~~~~~l~~~~~L~~L~l~~n~ 164 (203)
+++.... .+..+++|+.|++++|.
T Consensus 127 ITD~Gl~-~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 127 VTDKGII-ALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp CCHHHHH-HGGGCTTCCEEEEESCT
T ss_pred CCHHHHH-HHhcCCCCCEEECCCCC
Confidence 5443333 45556666666666663
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.38 E-value=3.3e-07 Score=66.10 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=7.6
Q ss_pred cCCccEEEccCCcCCc
Q 037699 85 LCKLRSVFLSHSNMNQ 100 (203)
Q Consensus 85 l~~L~~L~l~~n~~~~ 100 (203)
+++|+.|++++|.+..
T Consensus 169 l~~L~~L~Ls~N~l~~ 184 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYR 184 (267)
T ss_dssp CTTCCEEECTTSCCCC
T ss_pred CCCCCEEECCCCCCCC
Confidence 4445555555554443
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.33 E-value=7e-07 Score=64.43 Aligned_cols=62 Identities=29% Similarity=0.404 Sum_probs=29.2
Q ss_pred CCCCccEEeCCCCccccccccc--ccccccCCCCCCCEEEccccccCccchhhhhccC--CccEEEccCCcCC
Q 037699 31 NLTSLRYLDLSANISILQYLSG--TFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLC--KLRSVFLSHSNMN 99 (203)
Q Consensus 31 ~l~~L~~L~l~~~~~~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~n~~~ 99 (203)
.+++|+.|++++|. +.. .++..+..+++|+.|++++|.+.+. ..+..+. +|++|++.+|++.
T Consensus 168 ~l~~L~~L~Ls~N~-----l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNR-----LYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSC-----CCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCC-----CCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 34555555555554 332 2233344455555555555555422 1222222 5555555555554
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.06 E-value=1.2e-05 Score=55.11 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=22.6
Q ss_pred ccccCCCCCCCEEEccccccCcc----chhhhhccCCccEEEccCCcCCcch
Q 037699 55 SSSVGNLTSIQTLDLSFNNLEGK----IATSFGRLCKLRSVFLSHSNMNQEI 102 (203)
Q Consensus 55 ~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~ 102 (203)
.+.+.....|+.|++++|.+.+. +...+.....|++|++..|.+....
T Consensus 63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 33444445555555555555422 2233334445555555555554433
No 156
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.93 E-value=0.00021 Score=54.53 Aligned_cols=59 Identities=17% Similarity=0.150 Sum_probs=44.4
Q ss_pred cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCCC
Q 037699 126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESC 187 (203)
Q Consensus 126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 187 (203)
.+.+|+.+.+..+ + ..+...+|.+|.+|+.+.+..+ ++......+..+.+|+.+.+..+
T Consensus 318 ~c~~L~~i~lp~~-v-~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 318 SCTSLVSIDLPYL-V-EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TCTTCCEECCCTT-C-CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred CCCCCCEEEeCCc-c-cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 5678888888654 4 3555568889999999998776 55445567888899999998754
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.88 E-value=0.0004 Score=52.54 Aligned_cols=59 Identities=17% Similarity=0.099 Sum_probs=36.7
Q ss_pred cCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCC
Q 037699 126 QLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLES 186 (203)
Q Consensus 126 ~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 186 (203)
.+.+|+.+.+..+.+. .+...+|.+|.+|+.+.+..+ ++......+..+.+|+.+.+..
T Consensus 284 ~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 5667777777766653 455556777777777777544 3333344566666676666543
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.82 E-value=0.00035 Score=53.29 Aligned_cols=132 Identities=11% Similarity=0.183 Sum_probs=70.0
Q ss_pred ccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEEccCCcCCcchhhhh
Q 037699 27 RGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNMNQEISKIL 106 (203)
Q Consensus 27 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 106 (203)
.+|..+..|+.+.+..+ ........+..+..|+.+.+.. .++..-...|..+.+|+.+.+..+ +......++
T Consensus 259 ~aF~~c~~L~~i~lp~~------~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF 330 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDS------VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAF 330 (394)
T ss_dssp TTTTTCSSCCEEECCTT------CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTT
T ss_pred ceeeecccccEEecccc------cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHh
Confidence 34555666666666554 3444455566666666666642 233233345666666766666542 222222222
Q ss_pred hhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccccCCCCCCCCCccEEEcCC
Q 037699 107 NIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLNVSPDWIPPFQLKELNLES 186 (203)
Q Consensus 107 ~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 186 (203)
. .+.+|+.+.+..+ + ..+...+|.+|.+|+.+++.++.... ..+..+..|+.+.+..
T Consensus 331 ~------------------~C~~L~~i~ip~s-v-~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 331 A------------------GCEQLERIAIPSS-V-TKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAP 387 (394)
T ss_dssp T------------------TCTTCCEEEECTT-C-CBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-------
T ss_pred h------------------CCCCCCEEEECcc-c-CEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCC
Confidence 2 5677888888544 3 25555578888888888888775442 2455566777777766
Q ss_pred CCC
Q 037699 187 CNL 189 (203)
Q Consensus 187 n~l 189 (203)
+.+
T Consensus 388 ~~~ 390 (394)
T 4gt6_A 388 GSI 390 (394)
T ss_dssp ---
T ss_pred CCE
Confidence 544
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.81 E-value=1.5e-05 Score=54.70 Aligned_cols=122 Identities=10% Similarity=0.071 Sum_probs=83.9
Q ss_pred cccccCCCCCCCEEEcccc-ccCc----cchhhhhccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCC
Q 037699 54 FSSSVGNLTSIQTLDLSFN-NLEG----KIATSFGRLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLS 128 (203)
Q Consensus 54 ~~~~l~~~~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ 128 (203)
+...+..-+.|+.|+++++ .+.. .+...+.....|+.|++++|.+.+.....++..-. .-+
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~--------------~N~ 98 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE--------------TSP 98 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH--------------HCS
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh--------------cCC
Confidence 4445566778999999985 7763 34556677788999999999998765544432111 457
Q ss_pred CCCEEEccCCccccccch---hhhccCCCccEEEccCC---cccc----ccCCCCCCCCCccEEEcCCCCC
Q 037699 129 SLDSVNLSNNTLFGSLFE---IHFAKLSKLKYFDVSQN---SLTL----NVSPDWIPPFQLKELNLESCNL 189 (203)
Q Consensus 129 ~L~~L~l~~n~l~~~~~~---~~l~~~~~L~~L~l~~n---~~~~----~~~~~l~~~~~L~~L~l~~n~l 189 (203)
.|+.|+++.|.+.+.... ..+..-+.|+.|+|+++ .+.. .+.+.+..-++|+.|+++.|.+
T Consensus 99 tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 99 SLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp SCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred ccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 899999999999654332 23445567999999865 3332 1334455567899999987765
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.78 E-value=0.00047 Score=52.16 Aligned_cols=139 Identities=15% Similarity=0.149 Sum_probs=80.3
Q ss_pred CcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCc
Q 037699 9 DHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKL 88 (203)
Q Consensus 9 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 88 (203)
.+++.+.+..+ +......++..+..|+.+.+..+ +.......+..+.+++.+.+..+ +.......|..+.+|
T Consensus 217 ~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~------v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 217 KNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN------VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT------CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccceeeeccc-eeEEccccccCCccceEEEcCCC------ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 34444444433 22123344555666666666554 44444555666667777766543 332333456667777
Q ss_pred cEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCCccccc
Q 037699 89 RSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQNSLTLN 168 (203)
Q Consensus 89 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 168 (203)
+.+.+..+.+.......+. .+.+|+.+.+..+ + ..+...+|.+|.+|+.+.+..+ ++..
T Consensus 289 ~~i~l~~~~i~~I~~~aF~------------------~c~~L~~i~lp~~-l-~~I~~~aF~~C~~L~~i~ip~~-v~~I 347 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFM------------------DCVKLSSVTLPTA-L-KTIQVYAFKNCKALSTISYPKS-ITLI 347 (379)
T ss_dssp CEEEECCTTCCEECTTTTT------------------TCTTCCEEECCTT-C-CEECTTTTTTCTTCCCCCCCTT-CCEE
T ss_pred ccccccccccceehhhhhc------------------CCCCCCEEEcCcc-c-cEEHHHHhhCCCCCCEEEECCc-cCEE
Confidence 7777766555443333333 6788999998654 4 3555668889999999888654 4422
Q ss_pred cCCCCCCC
Q 037699 169 VSPDWIPP 176 (203)
Q Consensus 169 ~~~~l~~~ 176 (203)
....+..+
T Consensus 348 ~~~aF~~c 355 (379)
T 4h09_A 348 ESGAFEGS 355 (379)
T ss_dssp CTTTTTTS
T ss_pred chhHhhCC
Confidence 33445444
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.74 E-value=0.00032 Score=53.45 Aligned_cols=131 Identities=13% Similarity=0.170 Sum_probs=88.2
Q ss_pred ccccCCcccEEecCCCccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhh
Q 037699 4 VFGLSDHLVFLDLSLNNFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFG 83 (203)
Q Consensus 4 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 83 (203)
.|..+..|+.+.+..+... ....++..+..|+.+.+... +.......|..+.+|+.+.+..+ ++..-...|.
T Consensus 260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~~------i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~ 331 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSSR------ITELPESVFAGCISLKSIDIPEG-ITQILDDAFA 331 (394)
T ss_dssp TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCTT------CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred eeeecccccEEecccccce-ecCcccccccccccccCCCc------ccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence 4556678888888765443 45567888999999999865 66667778999999999999764 4434456788
Q ss_pred ccCCccEEEccCCcCCcchhhhhhhccccccCCccccccccccCCCCCEEEccCCccccccchhhhccCCCccEEEccCC
Q 037699 84 RLCKLRSVFLSHSNMNQEISKILNIFSTCILDGLEVLEMTEWQLSSLDSVNLSNNTLFGSLFEIHFAKLSKLKYFDVSQN 163 (203)
Q Consensus 84 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~~~~L~~L~l~~n 163 (203)
.+.+|+.+.+..+ +......++. .+.+|+.+.+.++... . ..+..+..|+.+.+..+
T Consensus 332 ~C~~L~~i~ip~s-v~~I~~~aF~------------------~C~~L~~i~~~~~~~~--~--~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 332 GCEQLERIAIPSS-VTKIPESAFS------------------NCTALNNIEYSGSRSQ--W--NAISTDSGLQNLPVAPG 388 (394)
T ss_dssp TCTTCCEEEECTT-CCBCCGGGGT------------------TCTTCCEEEESSCHHH--H--HTCBCCCCC--------
T ss_pred CCCCCCEEEECcc-cCEEhHhHhh------------------CCCCCCEEEECCceee--h--hhhhccCCCCEEEeCCC
Confidence 9999999998654 4444444444 6889999999887542 1 24567788888877655
Q ss_pred cc
Q 037699 164 SL 165 (203)
Q Consensus 164 ~~ 165 (203)
.+
T Consensus 389 ~~ 390 (394)
T 4gt6_A 389 SI 390 (394)
T ss_dssp --
T ss_pred CE
Confidence 43
No 162
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.61 E-value=0.00045 Score=52.65 Aligned_cols=59 Identities=7% Similarity=0.133 Sum_probs=28.4
Q ss_pred ccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccccccCccchhhhhccCCccEEE
Q 037699 27 RGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSFNNLEGKIATSFGRLCKLRSVF 92 (203)
Q Consensus 27 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 92 (203)
.+|.++.+|+.+.+..+ +.......|..+.+|+.+++..+ ++..-...|..+.+|+.+.
T Consensus 65 ~AF~~c~~L~~i~lp~~------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~ 123 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST------VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSIL 123 (394)
T ss_dssp TTTTTCTTEEEEECCTT------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCC
T ss_pred HHhhCCCCceEEEeCCC------ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhc
Confidence 44555555666655543 44444455555555666655433 2212223344444444433
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.21 E-value=0.00072 Score=43.18 Aligned_cols=40 Identities=13% Similarity=-0.072 Sum_probs=22.5
Q ss_pred CccEEEccCCccccccCCCCCCCCCccEEEcCCCCCCCCC
Q 037699 154 KLKYFDVSQNSLTLNVSPDWIPPFQLKELNLESCNLVGNR 193 (203)
Q Consensus 154 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~ 193 (203)
+++.|+|++|.++......+..+++|+.|+|.+|.+..+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 4556666666665444444555556666666666654443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.58 E-value=0.007 Score=38.51 Aligned_cols=36 Identities=25% Similarity=0.191 Sum_probs=18.9
Q ss_pred CCCEEEccccccCccchhhhhccCCccEEEccCCcC
Q 037699 63 SIQTLDLSFNNLEGKIATSFGRLCKLRSVFLSHSNM 98 (203)
Q Consensus 63 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 98 (203)
++++|++++|.++..-+..|..+++|+.+++.+|++
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 355555555555533334455555555566555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=77.85 E-value=4.6 Score=24.03 Aligned_cols=46 Identities=15% Similarity=0.134 Sum_probs=30.8
Q ss_pred ccCCCCCccccCCCCccEEeCCCCcccccccccccccccCCCCCCCEEEccc
Q 037699 20 NFQGPIPRGLGNLTSLRYLDLSANISILQYLSGTFSSSVGNLTSIQTLDLSF 71 (203)
Q Consensus 20 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 71 (203)
.++..-..+|.++.+|+.+.+-.+ +.......|..+.+|+.+.+..
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~------v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN------IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT------SSCCCTTSSTTCTTCCCEEECC
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc------hheEcHHHHhccCCccEEEEcC
Confidence 344444566777777777777766 5666666777777777777654
Done!