Your job contains 1 sequence.
>037700
MASDLNLPESLYEDYSTPDLPVHGPASVAYWIQALQSHETKERALLILSQNKEIRKDLAP
LLWNSIGTISALLQEIISVYRTLSSPNLTETASTRVSNALALFQVTFTSIGSSFAILKVY
NCMATFRAIKSSMTRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGTLVKS
DDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADRFFAV
ARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQLHVR
SSKTPISSS
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 037700
(309 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F2Z4M8 - symbol:RQCD1 "Uncharacterized protein"... 431 1.4e-60 2
UNIPROTKB|A7MB47 - symbol:RQCD1 "Cell differentiation pro... 431 1.4e-60 2
UNIPROTKB|Q92600 - symbol:RQCD1 "Cell differentiation pro... 431 1.4e-60 2
UNIPROTKB|F2Z5T0 - symbol:RQCD1 "Uncharacterized protein"... 431 1.4e-60 2
UNIPROTKB|Q4R347 - symbol:RQCD1 "Cell differentiation pro... 431 1.4e-60 2
UNIPROTKB|Q5R6Z6 - symbol:RQCD1 "Cell differentiation pro... 431 1.4e-60 2
MGI|MGI:1928902 - symbol:Rqcd1 "rcd1 (required for cell d... 431 1.4e-60 2
RGD|1311495 - symbol:Rqcd1 "Rcd1 required for cell differ... 431 1.4e-60 2
ZFIN|ZDB-GENE-030131-1558 - symbol:rqcd1 "RCD1 required f... 426 1.4e-60 2
UNIPROTKB|Q6IP65 - symbol:rqcd1 "Cell differentiation pro... 431 2.9e-60 2
UNIPROTKB|Q6P819 - symbol:rqcd1 "Cell differentiation pro... 431 2.9e-60 2
POMBASE|SPAC29B12.06c - symbol:rcd1 "RNA-binding protein,... 426 1.8e-58 2
UNIPROTKB|G4NB38 - symbol:MGG_00632 "Cell differentiation... 449 2.3e-58 2
FB|FBgn0031047 - symbol:Rcd-1 "Required for cell differen... 416 3.3e-57 2
ASPGD|ASPL0000012996 - symbol:AN3669 species:162425 "Emer... 438 6.9e-57 2
DICTYBASE|DDB_G0269778 - symbol:DDB_G0269778 "cell differ... 416 2.0e-55 2
CGD|CAL0003168 - symbol:orf19.7198 species:5476 "Candida ... 338 1.0e-54 3
UNIPROTKB|Q5A097 - symbol:CAF40 "Potential CCR4-NOT compl... 338 1.0e-54 3
SGD|S000005232 - symbol:CAF40 "Component of the CCR4-NOT ... 381 1.6e-49 2
TAIR|locus:2091936 - symbol:AT3G20800 "AT3G20800" species... 511 5.2e-49 1
TAIR|locus:2182315 - symbol:AT5G12980 "AT5G12980" species... 494 3.3e-47 1
FB|FBgn0032089 - symbol:Rcd-1r "Rcd-1 related" species:72... 338 4.7e-44 2
GENEDB_PFALCIPARUM|PFE0375w - symbol:PFE0375w "cell diffe... 459 1.7e-43 1
UNIPROTKB|Q8I427 - symbol:PFE0375w "Cell differentiation ... 459 1.7e-43 1
DICTYBASE|DDB_G0275289 - symbol:DDB_G0275289 "cell differ... 303 5.9e-35 2
WB|WBGene00016139 - symbol:ntl-9 species:6239 "Caenorhabd... 368 7.4e-34 1
TAIR|locus:2060221 - symbol:AT2G32550 species:3702 "Arabi... 267 1.4e-27 2
>UNIPROTKB|F2Z4M8 [details] [associations]
symbol:RQCD1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0019221 "cytokine-mediated signaling pathway"
evidence=IEA] [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR016024 Pfam:PF04078 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0019221 GO:GO:0000932
GeneTree:ENSGT00390000001225 OMA:CLPDQLR InterPro:IPR007216
PANTHER:PTHR12262 EMBL:AADN02016787 IPI:IPI00575088
ProteinModelPortal:F2Z4M8 SMR:F2Z4M8 PRIDE:F2Z4M8
Ensembl:ENSGALT00000018598 ArrayExpress:F2Z4M8 Uniprot:F2Z4M8
Length = 299
Score = 431 (156.8 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 95/181 (52%), Positives = 118/181 (65%)
Query: 118 KVYNCMATFRAIKSSM-TRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S TR S + A +PL+LYPFL+T K +P EYLRLTSLGVIG
Sbjct: 89 RVCNALALLQCVASHPETR--SAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGA 145
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK+D+ E I FLL TEI P CL ME GS+LSK VATFI+ KILL + GL Y C +R
Sbjct: 146 LVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYER 205
Query: 237 FFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQ 296
F VA L +M +L ++PS RLLKH++ CY RLS +PRA + LR CLP D F
Sbjct: 206 FSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQV 265
Query: 297 L 297
L
Sbjct: 266 L 266
Score = 207 (77.9 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S ET+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQ 104
S RV NALAL Q
Sbjct: 85 HQSNRVCNALALLQ 98
>UNIPROTKB|A7MB47 [details] [associations]
symbol:RQCD1 "Cell differentiation protein RCD1 homolog"
species:9913 "Bos taurus" [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0019221
"cytokine-mediated signaling pathway" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR016024 Pfam:PF04078 GO:GO:0005634 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006355 GO:GO:0019221
GO:GO:0006351 GO:GO:0000932 eggNOG:COG5209
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327
EMBL:BC151334 IPI:IPI00708460 RefSeq:NP_001094637.1
UniGene:Bt.23678 ProteinModelPortal:A7MB47 SMR:A7MB47 STRING:A7MB47
PRIDE:A7MB47 Ensembl:ENSBTAT00000004955 GeneID:536537
KEGG:bta:536537 CTD:9125 HOVERGEN:HBG056785 InParanoid:A7MB47
OrthoDB:EOG4W9J4C NextBio:20876967 Uniprot:A7MB47
Length = 299
Score = 431 (156.8 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 95/181 (52%), Positives = 118/181 (65%)
Query: 118 KVYNCMATFRAIKSSM-TRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S TR S + A +PL+LYPFL+T K +P EYLRLTSLGVIG
Sbjct: 89 RVCNALALLQCVASHPETR--SAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGA 145
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK+D+ E I FLL TEI P CL ME GS+LSK VATFI+ KILL + GL Y C +R
Sbjct: 146 LVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYER 205
Query: 237 FFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQ 296
F VA L +M +L ++PS RLLKH++ CY RLS +PRA + LR CLP D F
Sbjct: 206 FSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQV 265
Query: 297 L 297
L
Sbjct: 266 L 266
Score = 207 (77.9 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S ET+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQ 104
S RV NALAL Q
Sbjct: 85 HQSNRVCNALALLQ 98
>UNIPROTKB|Q92600 [details] [associations]
symbol:RQCD1 "Cell differentiation protein RCD1 homolog"
species:9606 "Homo sapiens" [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0019221
"cytokine-mediated signaling pathway" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=ISS] [GO:0005515 "protein binding" evidence=IPI]
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=IDA]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=IMP] [GO:0030014 "CCR4-NOT complex"
evidence=IDA] [GO:0007548 "sex differentiation" evidence=TAS]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR016024
Pfam:PF04078 GO:GO:0005829 GO:GO:0005634 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006355 EMBL:CH471063
GO:GO:0019221 GO:GO:0006351 GO:GO:0000932 GO:GO:0007548
GO:GO:0000289 eggNOG:COG5209 HOGENOM:HOG000192069 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327 CTD:9125
HOVERGEN:HBG056785 OrthoDB:EOG4W9J4C EMBL:D87957 EMBL:BC007102
EMBL:BC137455 EMBL:BC137456 IPI:IPI00023101 RefSeq:NP_001258564.1
RefSeq:NP_005435.1 UniGene:Hs.148767 PDB:2FV2 PDBsum:2FV2
ProteinModelPortal:Q92600 SMR:Q92600 DIP:DIP-46840N IntAct:Q92600
MINT:MINT-1162783 STRING:Q92600 PhosphoSite:Q92600 DMDM:74716599
PaxDb:Q92600 PRIDE:Q92600 DNASU:9125 Ensembl:ENST00000273064
Ensembl:ENST00000542068 GeneID:9125 KEGG:hsa:9125 UCSC:uc010zkh.2
GeneCards:GC02P219433 HGNC:HGNC:10445 HPA:HPA046622 MIM:612054
neXtProt:NX_Q92600 PharmGKB:PA34859 InParanoid:Q92600
PhylomeDB:Q92600 ChiTaRS:RQCD1 EvolutionaryTrace:Q92600
GenomeRNAi:9125 NextBio:34205 ArrayExpress:Q92600 Bgee:Q92600
CleanEx:HS_RQCD1 Genevestigator:Q92600 Uniprot:Q92600
Length = 299
Score = 431 (156.8 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 95/181 (52%), Positives = 118/181 (65%)
Query: 118 KVYNCMATFRAIKSSM-TRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S TR S + A +PL+LYPFL+T K +P EYLRLTSLGVIG
Sbjct: 89 RVCNALALLQCVASHPETR--SAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGA 145
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK+D+ E I FLL TEI P CL ME GS+LSK VATFI+ KILL + GL Y C +R
Sbjct: 146 LVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYER 205
Query: 237 FFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQ 296
F VA L +M +L ++PS RLLKH++ CY RLS +PRA + LR CLP D F
Sbjct: 206 FSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQV 265
Query: 297 L 297
L
Sbjct: 266 L 266
Score = 207 (77.9 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S ET+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQ 104
S RV NALAL Q
Sbjct: 85 HQSNRVCNALALLQ 98
>UNIPROTKB|F2Z5T0 [details] [associations]
symbol:RQCD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
[GO:0019221 "cytokine-mediated signaling pathway" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
InterPro:IPR016024 Pfam:PF04078 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0019221 GO:GO:0000932
GeneTree:ENSGT00390000001225 KO:K12606 OMA:CLPDQLR
InterPro:IPR007216 PANTHER:PTHR12262 EMBL:CU570813
RefSeq:XP_001925255.2 UniGene:Ssc.2149 ProteinModelPortal:F2Z5T0
SMR:F2Z5T0 PRIDE:F2Z5T0 Ensembl:ENSSSCT00000017634 GeneID:100153939
KEGG:ssc:100153939 Uniprot:F2Z5T0
Length = 299
Score = 431 (156.8 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 95/181 (52%), Positives = 118/181 (65%)
Query: 118 KVYNCMATFRAIKSSM-TRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S TR S + A +PL+LYPFL+T K +P EYLRLTSLGVIG
Sbjct: 89 RVCNALALLQCVASHPETR--SAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGA 145
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK+D+ E I FLL TEI P CL ME GS+LSK VATFI+ KILL + GL Y C +R
Sbjct: 146 LVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYER 205
Query: 237 FFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQ 296
F VA L +M +L ++PS RLLKH++ CY RLS +PRA + LR CLP D F
Sbjct: 206 FSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQV 265
Query: 297 L 297
L
Sbjct: 266 L 266
Score = 207 (77.9 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S ET+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQ 104
S RV NALAL Q
Sbjct: 85 HQSNRVCNALALLQ 98
>UNIPROTKB|Q4R347 [details] [associations]
symbol:RQCD1 "Cell differentiation protein RCD1 homolog"
species:9541 "Macaca fascicularis" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
GO:GO:0005634 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0006355 GO:GO:0006351 GO:GO:0000932 InterPro:IPR007216
PANTHER:PTHR12262 GO:GO:2000327 HOVERGEN:HBG056785 EMBL:AB179421
ProteinModelPortal:Q4R347 SMR:Q4R347 PRIDE:Q4R347 Uniprot:Q4R347
Length = 299
Score = 431 (156.8 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 95/181 (52%), Positives = 118/181 (65%)
Query: 118 KVYNCMATFRAIKSSM-TRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S TR S + A +PL+LYPFL+T K +P EYLRLTSLGVIG
Sbjct: 89 RVCNALALLQCVASHPETR--SAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGA 145
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK+D+ E I FLL TEI P CL ME GS+LSK VATFI+ KILL + GL Y C +R
Sbjct: 146 LVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYER 205
Query: 237 FFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQ 296
F VA L +M +L ++PS RLLKH++ CY RLS +PRA + LR CLP D F
Sbjct: 206 FSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQV 265
Query: 297 L 297
L
Sbjct: 266 L 266
Score = 207 (77.9 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S ET+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQ 104
S RV NALAL Q
Sbjct: 85 HQSNRVCNALALLQ 98
>UNIPROTKB|Q5R6Z6 [details] [associations]
symbol:RQCD1 "Cell differentiation protein RCD1 homolog"
species:9601 "Pongo abelii" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISS] [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
GO:GO:0005634 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0006355 GO:GO:0019221 GO:GO:0006351 GO:GO:0000932
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327
CTD:9125 HOVERGEN:HBG056785 EMBL:CR859645 EMBL:CR860327
RefSeq:NP_001126453.1 UniGene:Pab.1164 ProteinModelPortal:Q5R6Z6
SMR:Q5R6Z6 PRIDE:Q5R6Z6 Ensembl:ENSPPYT00000015320 GeneID:100173439
KEGG:pon:100173439 InParanoid:Q5R6Z6 Uniprot:Q5R6Z6
Length = 299
Score = 431 (156.8 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 95/181 (52%), Positives = 118/181 (65%)
Query: 118 KVYNCMATFRAIKSSM-TRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S TR S + A +PL+LYPFL+T K +P EYLRLTSLGVIG
Sbjct: 89 RVCNALALLQCVASHPETR--SAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGA 145
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK+D+ E I FLL TEI P CL ME GS+LSK VATFI+ KILL + GL Y C +R
Sbjct: 146 LVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYER 205
Query: 237 FFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQ 296
F VA L +M +L ++PS RLLKH++ CY RLS +PRA + LR CLP D F
Sbjct: 206 FSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQV 265
Query: 297 L 297
L
Sbjct: 266 L 266
Score = 207 (77.9 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S ET+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQ 104
S RV NALAL Q
Sbjct: 85 HQSNRVCNALALLQ 98
>MGI|MGI:1928902 [details] [associations]
symbol:Rqcd1 "rcd1 (required for cell differentiation)
homolog 1 (S. pombe)" species:10090 "Mus musculus" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0019221
"cytokine-mediated signaling pathway" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=ISO] [GO:0033147 "negative regulation
of intracellular estrogen receptor signaling pathway" evidence=ISO]
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO]
InterPro:IPR016024 MGI:MGI:1928902 Pfam:PF04078 GO:GO:0005634
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006355
GO:GO:0019221 GO:GO:0006351 GO:GO:0000932 eggNOG:COG5209
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327
CTD:9125 HOVERGEN:HBG056785 OrthoDB:EOG4W9J4C EMBL:AF221849
EMBL:AK005025 EMBL:BC050898 EMBL:BC051948 IPI:IPI00123602
RefSeq:NP_067358.1 UniGene:Mm.291708 ProteinModelPortal:Q9JKY0
SMR:Q9JKY0 DIP:DIP-34266N IntAct:Q9JKY0 STRING:Q9JKY0
PhosphoSite:Q9JKY0 PaxDb:Q9JKY0 PRIDE:Q9JKY0
Ensembl:ENSMUST00000087215 GeneID:58184 KEGG:mmu:58184
UCSC:uc007bmf.2 InParanoid:Q9JKY0 NextBio:314143 Bgee:Q9JKY0
Genevestigator:Q9JKY0 Uniprot:Q9JKY0
Length = 299
Score = 431 (156.8 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 95/181 (52%), Positives = 118/181 (65%)
Query: 118 KVYNCMATFRAIKSSM-TRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S TR S + A +PL+LYPFL+T K +P EYLRLTSLGVIG
Sbjct: 89 RVCNALALLQCVASHPETR--SAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGA 145
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK+D+ E I FLL TEI P CL ME GS+LSK VATFI+ KILL + GL Y C +R
Sbjct: 146 LVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYER 205
Query: 237 FFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQ 296
F VA L +M +L ++PS RLLKH++ CY RLS +PRA + LR CLP D F
Sbjct: 206 FSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQV 265
Query: 297 L 297
L
Sbjct: 266 L 266
Score = 207 (77.9 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S ET+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQ 104
S RV NALAL Q
Sbjct: 85 HQSNRVCNALALLQ 98
>RGD|1311495 [details] [associations]
symbol:Rqcd1 "Rcd1 required for cell differentiation1 homolog
(S. pombe)" species:10116 "Rattus norvegicus" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO;ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0019221 "cytokine-mediated signaling pathway"
evidence=IEA;ISO] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0033147 "negative regulation of intracellular estrogen receptor
signaling pathway" evidence=ISO] [GO:2000327 "positive regulation
of ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISO;ISS] InterPro:IPR016024 RGD:1311495
Pfam:PF04078 GO:GO:0005634 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0006355 GO:GO:0019221 GO:GO:0006351
GO:GO:0000932 eggNOG:COG5209 GeneTree:ENSGT00390000001225
HOGENOM:HOG000192069 KO:K12606 InterPro:IPR007216 PANTHER:PTHR12262
GO:GO:2000327 CTD:9125 HOVERGEN:HBG056785 OrthoDB:EOG4W9J4C
EMBL:BC087134 IPI:IPI00211468 RefSeq:NP_001009357.1
UniGene:Rn.18033 ProteinModelPortal:Q5PQL2 SMR:Q5PQL2 IntAct:Q5PQL2
STRING:Q5PQL2 PRIDE:Q5PQL2 Ensembl:ENSRNOT00000021548 GeneID:301513
KEGG:rno:301513 UCSC:RGD:1311495 InParanoid:Q5PQL2 NextBio:648869
Genevestigator:Q5PQL2 Uniprot:Q5PQL2
Length = 299
Score = 431 (156.8 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 95/181 (52%), Positives = 118/181 (65%)
Query: 118 KVYNCMATFRAIKSSM-TRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S TR S + A +PL+LYPFL+T K +P EYLRLTSLGVIG
Sbjct: 89 RVCNALALLQCVASHPETR--SAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGA 145
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK+D+ E I FLL TEI P CL ME GS+LSK VATFI+ KILL + GL Y C +R
Sbjct: 146 LVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYER 205
Query: 237 FFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQ 296
F VA L +M +L ++PS RLLKH++ CY RLS +PRA + LR CLP D F
Sbjct: 206 FSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQV 265
Query: 297 L 297
L
Sbjct: 266 L 266
Score = 207 (77.9 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 42/74 (56%), Positives = 54/74 (72%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S ET+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQ 104
S RV NALAL Q
Sbjct: 85 HQSNRVCNALALLQ 98
>ZFIN|ZDB-GENE-030131-1558 [details] [associations]
symbol:rqcd1 "RCD1 required for cell
differentiation1 homolog (S. pombe)" species:7955 "Danio rerio"
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] Pfam:PF04078 ZFIN:ZDB-GENE-030131-1558 GO:GO:0005634
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006355 GO:GO:0006351
GO:GO:0000932 eggNOG:COG5209 GeneTree:ENSGT00390000001225
HOGENOM:HOG000192069 KO:K12606 OMA:CLPDQLR InterPro:IPR007216
PANTHER:PTHR12262 GO:GO:2000327 CTD:9125 HOVERGEN:HBG056785
OrthoDB:EOG4W9J4C EMBL:BX548072 EMBL:BC067547 IPI:IPI00500235
RefSeq:NP_999925.1 UniGene:Dr.75506 ProteinModelPortal:Q6NWL4
SMR:Q6NWL4 STRING:Q6NWL4 PRIDE:Q6NWL4 DNASU:406632
Ensembl:ENSDART00000047464 Ensembl:ENSDART00000143574 GeneID:406632
KEGG:dre:406632 InParanoid:Q6NWL4 NextBio:20818172 Bgee:Q6NWL4
Uniprot:Q6NWL4
Length = 298
Score = 426 (155.0 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 94/181 (51%), Positives = 118/181 (65%)
Query: 118 KVYNCMATFRAIKSSM-TRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S + TR S + A +PL+LYPFL+T K +P EYLRLTSLGVIG
Sbjct: 88 RVCNALALLQCVASHVETR--SAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGA 144
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK+D+ E I FLL TEI P CL ME GS+LSK VATFI+ KILL + GL Y C +R
Sbjct: 145 LVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYER 204
Query: 237 FFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQ 296
F VA L +M +L ++PS RLLKH++ CY RLS + RA + LR CLP D F
Sbjct: 205 FSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNSRAREALRQCLPDQLKDTTFAQV 264
Query: 297 L 297
L
Sbjct: 265 L 265
Score = 212 (79.7 bits), Expect = 1.4e-60, Sum P(2) = 1.4e-60
Identities = 47/105 (44%), Positives = 64/105 (60%)
Query: 16 STPDLPVHGPASVAYWIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQE 75
ST L + WI L S ET+E ALL LS+ +E DLAP+LW+S GTI+ALLQE
Sbjct: 9 STAGLAQVDREKIYQWINELSSPETRENALLELSKKRESVTDLAPMLWHSCGTIAALLQE 68
Query: 76 IISVYRTLSSPNLTETASTRVSNALALFQVTFTSIGSSFAILKVY 120
I+++Y +++ P LT S RV NALAL Q + + + A L +
Sbjct: 69 IVNIYPSINPPTLTAHQSNRVCNALALLQCVASHVETRSAFLAAH 113
>UNIPROTKB|Q6IP65 [details] [associations]
symbol:rqcd1 "Cell differentiation protein RCD1 homolog"
species:8355 "Xenopus laevis" [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
GO:GO:0005634 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0006355 GO:GO:0006351 GO:GO:0000932 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327 CTD:9125
HOVERGEN:HBG056785 EMBL:BC072053 RefSeq:NP_001085150.1
UniGene:Xl.46465 ProteinModelPortal:Q6IP65 SMR:Q6IP65 GeneID:432229
KEGG:xla:432229 Xenbase:XB-GENE-1001088 Uniprot:Q6IP65
Length = 299
Score = 431 (156.8 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 95/181 (52%), Positives = 118/181 (65%)
Query: 118 KVYNCMATFRAIKSSM-TRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S TR S + A +PL+LYPFL+T K +P EYLRLTSLGVIG
Sbjct: 89 RVCNALALLQCVASHPETR--SAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGA 145
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK+D+ E I FLL TEI P CL ME GS+LSK VATFI+ KILL + GL Y C +R
Sbjct: 146 LVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYER 205
Query: 237 FFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQ 296
F VA L +M +L ++PS RLLKH++ CY RLS +PRA + LR CLP D F
Sbjct: 206 FSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQV 265
Query: 297 L 297
L
Sbjct: 266 L 266
Score = 204 (76.9 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 41/74 (55%), Positives = 54/74 (72%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S +T+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPDTRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQ 104
S RV NALAL Q
Sbjct: 85 HQSNRVCNALALLQ 98
>UNIPROTKB|Q6P819 [details] [associations]
symbol:rqcd1 "Cell differentiation protein RCD1 homolog"
species:8364 "Xenopus (Silurana) tropicalis" [GO:2000327 "positive
regulation of ligand-dependent nuclear receptor transcription
coactivator activity" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
GO:GO:0005634 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0006355 GO:GO:0006351 GO:GO:0000932 eggNOG:COG5209
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:2000327 CTD:9125
HOVERGEN:HBG056785 OrthoDB:EOG4W9J4C EMBL:CR760361 EMBL:BC061412
RefSeq:NP_989024.1 UniGene:Str.7709 ProteinModelPortal:Q6P819
SMR:Q6P819 STRING:Q6P819 Ensembl:ENSXETT00000032762 GeneID:394620
KEGG:xtr:394620 Xenbase:XB-GENE-1001082 InParanoid:Q6P819
OMA:QLYANIC Bgee:Q6P819 Uniprot:Q6P819
Length = 299
Score = 431 (156.8 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 95/181 (52%), Positives = 118/181 (65%)
Query: 118 KVYNCMATFRAIKSSM-TRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S TR S + A +PL+LYPFL+T K +P EYLRLTSLGVIG
Sbjct: 89 RVCNALALLQCVASHPETR--SAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGA 145
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK+D+ E I FLL TEI P CL ME GS+LSK VATFI+ KILL + GL Y C +R
Sbjct: 146 LVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYER 205
Query: 237 FFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQ 296
F VA L +M +L ++PS RLLKH++ CY RLS +PRA + LR CLP D F
Sbjct: 206 FSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQV 265
Query: 297 L 297
L
Sbjct: 266 L 266
Score = 204 (76.9 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 41/74 (55%), Positives = 54/74 (72%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S +T+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPDTRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQ 104
S RV NALAL Q
Sbjct: 85 HQSNRVCNALALLQ 98
>POMBASE|SPAC29B12.06c [details] [associations]
symbol:rcd1 "RNA-binding protein, CCR4-NOT complex
subunit Rcd1" species:4896 "Schizosaccharomyces pombe" [GO:0000122
"negative regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0003723 "RNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=IC] [GO:0006402 "mRNA catabolic process" evidence=IC]
[GO:0007548 "sex differentiation" evidence=IEA] [GO:0010515
"negative regulation of induction of conjugation with cellular
fusion" evidence=IMP] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0031138
"negative regulation of conjugation with cellular fusion"
evidence=IGI] InterPro:IPR016024 PomBase:SPAC29B12.06c Pfam:PF04078
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0003723 GO:GO:0000122 GO:GO:0006402
GO:GO:0007548 GO:GO:0030014 eggNOG:COG5209 HOGENOM:HOG000192069
KO:K12606 OMA:CLPDQLR OrthoDB:EOG49CTHV InterPro:IPR007216
PANTHER:PTHR12262 GO:GO:0006354 GO:GO:0010515 EMBL:D87956
PIR:T43247 RefSeq:NP_594984.1 ProteinModelPortal:Q92368 SMR:Q92368
STRING:Q92368 EnsemblFungi:SPAC29B12.06c.1 GeneID:2542094
KEGG:spo:SPAC29B12.06c NextBio:20803167 Uniprot:Q92368
Length = 283
Score = 426 (155.0 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 95/180 (52%), Positives = 113/180 (62%)
Query: 118 KVYNCMATFRAIKSSMTRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGTL 177
+V N +A + I S I L A + L+LYPFLNT K KP EYLRLTSLGVIG L
Sbjct: 81 RVCNALALLQCIASHPETRIHFLN--AHITLFLYPFLNTLSKSKPFEYLRLTSLGVIGAL 138
Query: 178 VKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADRF 237
VK+D PE I FLL TEI P CL ME GS+LSK VA FI+ K L + GL+Y C +RF
Sbjct: 139 VKNDSPEVINFLLSTEIIPLCLRIMENGSELSKTVAIFIVQKFLCDDVGLQYICQTYERF 198
Query: 238 FAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQL 297
+AVA L M +LV+ + RLLKH+I CY RLS +PRA + LR CLP D F L
Sbjct: 199 YAVASVLNNMVMQLVDSFAFRLLKHVIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVL 258
Score = 192 (72.6 bits), Expect = 1.8e-58, Sum P(2) = 1.8e-58
Identities = 44/84 (52%), Positives = 57/84 (67%)
Query: 21 PVHGPASVAYWIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVY 80
P + PA V WI L S ++E+AL+ LS+ +E +DLA +LW+S G ++ALLQEIISVY
Sbjct: 7 PNYEPALVYEWIIQLVSGTSREQALVELSRKREQYEDLALILWHSYGVMTALLQEIISVY 66
Query: 81 RTLSSPNLTETASTRVSNALALFQ 104
L+ P LT S RV NALAL Q
Sbjct: 67 PLLNPPTLTGPTSNRVCNALALLQ 90
>UNIPROTKB|G4NB38 [details] [associations]
symbol:MGG_00632 "Cell differentiation protein rcd1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0007548 "sex
differentiation" evidence=ISS] [GO:0030014 "CCR4-NOT complex"
evidence=ISS] [GO:0030154 "cell differentiation" evidence=ISS]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=ISS] [GO:0031142 "induction of conjugation upon nitrogen
starvation" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 SUPFAM:SSF48371
EMBL:CM001235 GO:GO:0006352 GO:GO:0003723 GO:GO:0000122
GO:GO:0006402 GO:GO:0007548 GO:GO:0031142 GO:GO:0030014
GO:GO:0030015 KO:K12606 InterPro:IPR007216 PANTHER:PTHR12262
GO:GO:0006354 RefSeq:XP_003718384.1 EnsemblFungi:MGG_00632T0
GeneID:2674803 KEGG:mgr:MGG_00632 Uniprot:G4NB38
Length = 364
Score = 449 (163.1 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 96/181 (53%), Positives = 119/181 (65%)
Query: 118 KVYNCMATFRAIKS-SMTRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S + TR L + A +PLYLYPFLNT K +P EYLRLTSLGVIG
Sbjct: 156 RVCNALALLQCVASHNETR---TLFLNAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGA 212
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK+D E I FLL TEI P CL ME GS+LSK VA FI+ KILL + GL Y C +R
Sbjct: 213 LVKNDSSEVINFLLTTEIIPLCLRIMETGSELSKTVAIFIVQKILLDDNGLNYICATYER 272
Query: 237 FFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQ 296
F+AV L+ M +LVEQ + RLLKH++ C+ RLS + RA + LR CLP D F+S
Sbjct: 273 FYAVGTVLSNMVAQLVEQQTARLLKHVVRCFLRLSDNARAREALRQCLPDPLRDATFSSV 332
Query: 297 L 297
L
Sbjct: 333 L 333
Score = 168 (64.2 bits), Expect = 2.3e-58, Sum P(2) = 2.3e-58
Identities = 40/78 (51%), Positives = 53/78 (67%)
Query: 27 SVAYWIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSP 86
++AY I L + T+E ALL LS+ +E +LA +LW+S G +++LLQEIISVY L+
Sbjct: 89 TLAY-IADLLNENTREAALLELSKKREQVPELALILWHSFGVMTSLLQEIISVYTLLNPS 147
Query: 87 NLTETASTRVSNALALFQ 104
LT AS RV NALAL Q
Sbjct: 148 QLTAAASNRVCNALALLQ 165
>FB|FBgn0031047 [details] [associations]
symbol:Rcd-1 "Required for cell differentiation 1 ortholog"
species:7227 "Drosophila melanogaster" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
Pfam:PF04078 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:AE014298
GO:GO:0030014 eggNOG:COG5209 GeneTree:ENSGT00390000001225 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262 EMBL:AY118785
RefSeq:NP_608335.1 RefSeq:NP_728284.1 UniGene:Dm.7239 SMR:Q7JVP2
IntAct:Q7JVP2 STRING:Q7JVP2 EnsemblMetazoa:FBtr0074743
EnsemblMetazoa:FBtr0074744 GeneID:32966 KEGG:dme:Dmel_CG14213
UCSC:CG14213-RA CTD:32966 FlyBase:FBgn0031047 InParanoid:Q7JVP2
OrthoDB:EOG4V9S69 ChiTaRS:Rcd-1 GenomeRNAi:32966 NextBio:781271
Uniprot:Q7JVP2
Length = 304
Score = 416 (151.5 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 91/176 (51%), Positives = 112/176 (63%)
Query: 118 KVYNCMATFRAIKSSMTRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGTL 177
+V N +A + + S + L A++PLYLYPFL+T K +P EYLRLTSLGVIG L
Sbjct: 94 RVCNALALLQCVASHPETRTAFLQ--AQIPLYLYPFLSTTSKTRPFEYLRLTSLGVIGAL 151
Query: 178 VKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADRF 237
VK+D+ E I FLL TEI P CL+ M+ GS+LSK VATFII KILL E GL Y C +RF
Sbjct: 152 VKTDEQEVITFLLTTEIVPLCLSIMDSGSELSKTVATFIIQKILLDESGLSYICQTYERF 211
Query: 238 FAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKF 293
VA L +M +L + P RLLKH++ CY RLS + RA L CLP D F
Sbjct: 212 SHVAITLGKMVIQLAKDPCARLLKHVVRCYLRLSDNTRARKALGQCLPDQLRDGTF 267
Score = 190 (71.9 bits), Expect = 3.3e-57, Sum P(2) = 3.3e-57
Identities = 41/77 (53%), Positives = 52/77 (67%)
Query: 28 VAYWIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPN 87
V WI L +T+E ALL LS+ +E DLAP+LWNS GT ALLQEI+++Y +++ P
Sbjct: 29 VYQWINELAHPDTRETALLELSKKRET--DLAPMLWNSFGTACALLQEIVNIYPSITPPT 86
Query: 88 LTETASTRVSNALALFQ 104
LT S RV NALAL Q
Sbjct: 87 LTAHQSNRVCNALALLQ 103
>ASPGD|ASPL0000012996 [details] [associations]
symbol:AN3669 species:162425 "Emericella nidulans"
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0010515 "negative
regulation of induction of conjugation with cellular fusion"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] Pfam:PF04078 EMBL:BN001302 EMBL:AACD01000061
GO:GO:0030015 eggNOG:COG5209 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR OrthoDB:EOG49CTHV InterPro:IPR007216 PANTHER:PTHR12262
RefSeq:XP_661273.1 ProteinModelPortal:Q5B711 SMR:Q5B711
STRING:Q5B711 EnsemblFungi:CADANIAT00005063 GeneID:2873084
KEGG:ani:AN3669.2 Uniprot:Q5B711
Length = 396
Score = 438 (159.2 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 94/181 (51%), Positives = 119/181 (65%)
Query: 118 KVYNCMATFRAIKS-SMTRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S + TR L + A +PL+LYPFLNT K +P EYLRLTSLGVIG
Sbjct: 189 RVCNALALLQCVASHNETR---TLFLNAHIPLFLYPFLNTTSKSRPFEYLRLTSLGVIGA 245
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK+D + I FLL TEI P CL ME GS+LSK VA FI+ KILL + GL Y C +R
Sbjct: 246 LVKNDSSDVINFLLTTEIIPLCLRIMETGSELSKTVAIFIVQKILLDDIGLAYICATYER 305
Query: 237 FFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQ 296
F+AV L+ M +LVEQ + RLLKH++ C+ RLS + RA + LR CLP D F+S
Sbjct: 306 FYAVGTVLSNMVTQLVEQQTVRLLKHVVRCFLRLSDNSRAREALRQCLPEPLRDATFSSV 365
Query: 297 L 297
L
Sbjct: 366 L 366
Score = 165 (63.1 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
Identities = 37/77 (48%), Positives = 49/77 (63%)
Query: 28 VAYWIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPN 87
V W+ L +E AL+ LS+ +E +LA ++W+S G ++ALLQEIISVY L+
Sbjct: 122 VFIWVAELLDSNRREAALMELSKKREQVPELALVIWHSFGVMTALLQEIISVYPLLNPSQ 181
Query: 88 LTETASTRVSNALALFQ 104
LT AS RV NALAL Q
Sbjct: 182 LTAAASNRVCNALALLQ 198
>DICTYBASE|DDB_G0269778 [details] [associations]
symbol:DDB_G0269778 "cell differentiation family,
Rcd1-like protein" species:44689 "Dictyostelium discoideum"
[GO:0003674 "molecular_function" evidence=ND] [GO:0030014 "CCR4-NOT
complex" evidence=ISS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=ISS]
dictyBase:DDB_G0269778 Pfam:PF04078 EMBL:AAFI02000005
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0006357 GO:GO:0030014
eggNOG:COG5209 KO:K12606 OMA:CLPDQLR InterPro:IPR007216
PANTHER:PTHR12262 RefSeq:XP_646272.1 ProteinModelPortal:Q55D59
SMR:Q55D59 STRING:Q55D59 EnsemblProtists:DDB0216421 GeneID:8617228
KEGG:ddi:DDB_G0269778 InParanoid:Q55D59 Uniprot:Q55D59
Length = 360
Score = 416 (151.5 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 91/187 (48%), Positives = 118/187 (63%)
Query: 118 KVYNCMATFRAIKSSM-TRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S TR + + +PL+LYPFLNT K +P EYLRLTSLGVIG
Sbjct: 118 RVCNALALLQCVASHPDTR---TYFLHSHIPLFLYPFLNTSSKNRPFEYLRLTSLGVIGA 174
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK DD I FLL TEI C+ ME GS+LSK VATFI+ KILL + GL Y CV +R
Sbjct: 175 LVKVDDSTVIDFLLSTEIMTLCVRIMETGSELSKTVATFIVQKILLDDMGLNYICVSNER 234
Query: 237 FFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQ 296
A LA M ++L++Q SPRLLKH+I CY RL+ +P++ + LR LP + F S
Sbjct: 235 IMAFLSVLANMIQQLIDQSSPRLLKHVIRCYLRLTDNPKSKESLRQFLPESLKNGTFNS- 293
Query: 297 LHVRSSK 303
H++ K
Sbjct: 294 -HLKDEK 299
Score = 173 (66.0 bits), Expect = 2.0e-55, Sum P(2) = 2.0e-55
Identities = 39/73 (53%), Positives = 49/73 (67%)
Query: 32 IQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTET 91
++ L E +E AL+ LS+ +E DLAP+L NS GTI+ALLQEI+S+Y LS P L
Sbjct: 55 VKDLTIPEKRENALVDLSKKRETVPDLAPILLNSFGTIAALLQEIVSIYPLLSPPKLKAL 114
Query: 92 ASTRVSNALALFQ 104
S RV NALAL Q
Sbjct: 115 PSNRVCNALALLQ 127
>CGD|CAL0003168 [details] [associations]
symbol:orf19.7198 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030015
"CCR4-NOT core complex" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0010515 "negative regulation of induction of conjugation with
cellular fusion" evidence=IEA] CGD:CAL0003168 Pfam:PF04078
eggNOG:COG5209 KO:K12606 InterPro:IPR007216 PANTHER:PTHR12262
EMBL:AACQ01000089 RefSeq:XP_715246.1 RefSeq:XP_888989.1
ProteinModelPortal:Q5A097 SMR:Q5A097 STRING:Q5A097 GeneID:3643146
GeneID:3703916 KEGG:cal:CaO19.7198 KEGG:cal:CaO19_7198
Uniprot:Q5A097
Length = 331
Score = 338 (124.0 bits), Expect = 1.0e-54, Sum P(3) = 1.0e-54
Identities = 71/135 (52%), Positives = 93/135 (68%)
Query: 118 KVYNCMATFRAIKSSM-TRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S++ TR L + A LPLYLYPFL+T +++ EYLRLTSLGVIG
Sbjct: 99 RVCNALALLQCVASNVQTR---TLFLNANLPLYLYPFLSTNARQRSFEYLRLTSLGVIGA 155
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK+D PE I FLL TEI P CL ME+ S+LSK VA FI+ KILL ++GL Y C +R
Sbjct: 156 LVKNDTPEVINFLLTTEIVPLCLNIMEISSELSKTVAIFILQKILLDDQGLAYVCTTFER 215
Query: 237 FFAVARALAQMTEKL 251
F VA L++M ++L
Sbjct: 216 FHTVASVLSKMIDQL 230
Score = 186 (70.5 bits), Expect = 1.0e-54, Sum P(3) = 1.0e-54
Identities = 40/80 (50%), Positives = 53/80 (66%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L + +ERALL L + +E DLA +LWNS G I+ LL+EIISVY L+ PNL+
Sbjct: 35 WISELVTGNNRERALLELGKKREQYDDLALVLWNSFGVITVLLEEIISVYPYLNPPNLSA 94
Query: 91 TASTRVSNALALFQVTFTSI 110
+ S RV NALAL Q +++
Sbjct: 95 SISNRVCNALALLQCVASNV 114
Score = 70 (29.7 bits), Expect = 1.0e-54, Sum P(3) = 1.0e-54
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 246 QMTEKLVEQPSP-RLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQL 297
Q T+ + S RLLKH++ CY RLS + A L LP D F++ L
Sbjct: 258 QQTQSVPSSNSSGRLLKHVVRCYMRLSDNLEARKALANILPEPLRDGTFSTIL 310
>UNIPROTKB|Q5A097 [details] [associations]
symbol:CAF40 "Potential CCR4-NOT complex associated factor
Caf40p" species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] CGD:CAL0003168 Pfam:PF04078
eggNOG:COG5209 KO:K12606 InterPro:IPR007216 PANTHER:PTHR12262
EMBL:AACQ01000089 RefSeq:XP_715246.1 RefSeq:XP_888989.1
ProteinModelPortal:Q5A097 SMR:Q5A097 STRING:Q5A097 GeneID:3643146
GeneID:3703916 KEGG:cal:CaO19.7198 KEGG:cal:CaO19_7198
Uniprot:Q5A097
Length = 331
Score = 338 (124.0 bits), Expect = 1.0e-54, Sum P(3) = 1.0e-54
Identities = 71/135 (52%), Positives = 93/135 (68%)
Query: 118 KVYNCMATFRAIKSSM-TRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S++ TR L + A LPLYLYPFL+T +++ EYLRLTSLGVIG
Sbjct: 99 RVCNALALLQCVASNVQTR---TLFLNANLPLYLYPFLSTNARQRSFEYLRLTSLGVIGA 155
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK+D PE I FLL TEI P CL ME+ S+LSK VA FI+ KILL ++GL Y C +R
Sbjct: 156 LVKNDTPEVINFLLTTEIVPLCLNIMEISSELSKTVAIFILQKILLDDQGLAYVCTTFER 215
Query: 237 FFAVARALAQMTEKL 251
F VA L++M ++L
Sbjct: 216 FHTVASVLSKMIDQL 230
Score = 186 (70.5 bits), Expect = 1.0e-54, Sum P(3) = 1.0e-54
Identities = 40/80 (50%), Positives = 53/80 (66%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L + +ERALL L + +E DLA +LWNS G I+ LL+EIISVY L+ PNL+
Sbjct: 35 WISELVTGNNRERALLELGKKREQYDDLALVLWNSFGVITVLLEEIISVYPYLNPPNLSA 94
Query: 91 TASTRVSNALALFQVTFTSI 110
+ S RV NALAL Q +++
Sbjct: 95 SISNRVCNALALLQCVASNV 114
Score = 70 (29.7 bits), Expect = 1.0e-54, Sum P(3) = 1.0e-54
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 246 QMTEKLVEQPSP-RLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQL 297
Q T+ + S RLLKH++ CY RLS + A L LP D F++ L
Sbjct: 258 QQTQSVPSSNSSGRLLKHVVRCYMRLSDNLEARKALANILPEPLRDGTFSTIL 310
>SGD|S000005232 [details] [associations]
symbol:CAF40 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA;IPI] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] [GO:0030015 "CCR4-NOT core complex"
evidence=IPI] [GO:0003674 "molecular_function" evidence=ND]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR016024 SGD:S000005232 Pfam:PF04078 GO:GO:0005634
GO:GO:0005737 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:BK006947 GO:GO:0006351 GO:GO:0032968 GO:GO:0030015 EMBL:Z71564
PIR:S63262 RefSeq:NP_014111.1 ProteinModelPortal:P53829 SMR:P53829
DIP:DIP-1995N IntAct:P53829 MINT:MINT-393536 STRING:P53829
PaxDb:P53829 PeptideAtlas:P53829 EnsemblFungi:YNL288W GeneID:855428
KEGG:sce:YNL288W CYGD:YNL288w eggNOG:COG5209
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR OrthoDB:EOG49CTHV NextBio:979301 Genevestigator:P53829
GermOnline:YNL288W InterPro:IPR007216 PANTHER:PTHR12262
Uniprot:P53829
Length = 373
Score = 381 (139.2 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 83/159 (52%), Positives = 101/159 (63%)
Query: 140 LMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCL 199
L + A +PL+L+PFLNT +++ EYLRLTSLGVIG LVK+D + I FLL+T+I P CL
Sbjct: 193 LFLQAHIPLFLFPFLNTTSRQRTFEYLRLTSLGVIGALVKNDSQDVITFLLRTDIVPLCL 252
Query: 200 TSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKL-VEQPSPR 258
ME S+LSK VA FI+ KILL + GL+Y C +RF+AV L M E L V P R
Sbjct: 253 RIMESSSELSKTVAIFILQKILLDDVGLQYICATLERFYAVTNVLKDMVEHLTVSTPPGR 312
Query: 259 LLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQL 297
LLKHII CY RLS A L+ LP D FT L
Sbjct: 313 LLKHIIRCYLRLSDDLEARRLLKIVLPAKLRDNTFTEVL 351
Score = 152 (58.6 bits), Expect = 1.6e-49, Sum P(2) = 1.6e-49
Identities = 36/78 (46%), Positives = 47/78 (60%)
Query: 27 SVAYWIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSP 86
+V +WI L KE+ALL L + +E DLA +LW+S G +++LL EIISVY L
Sbjct: 105 NVYHWICQLTYGPQKEQALLELGRKREQFDDLAVVLWSSFGVMTSLLNEIISVYPMLQPQ 164
Query: 87 NLTETASTRVSNALALFQ 104
L+ S RV NAL L Q
Sbjct: 165 MLSNNLSNRVCNALVLLQ 182
>TAIR|locus:2091936 [details] [associations]
symbol:AT3G20800 "AT3G20800" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0007275 "multicellular organismal
development" evidence=ISS] Pfam:PF04078 EMBL:CP002686 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262
ProtClustDB:CLSN2685062 UniGene:At.48685 UniGene:At.66456
EMBL:AY091082 EMBL:AY122953 IPI:IPI00525457 RefSeq:NP_188716.1
ProteinModelPortal:Q8RWV5 SMR:Q8RWV5 PRIDE:Q8RWV5 DNASU:821628
EnsemblPlants:AT3G20800.1 GeneID:821628 KEGG:ath:AT3G20800
TAIR:At3g20800 InParanoid:Q8RWV5 PhylomeDB:Q8RWV5
ArrayExpress:Q8RWV5 Genevestigator:Q8RWV5 Uniprot:Q8RWV5
Length = 316
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 107/181 (59%), Positives = 126/181 (69%)
Query: 118 KVYNCMATFRAIKS-SMTRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S S TR+ L + A +PLYLYPFLNT K +P EYLRLTSLGVIG
Sbjct: 105 RVCNSLALLQCVASHSDTRM---LFLKAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGA 161
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK DD E I FLL TEI P CL +ME+GS+LSK VATFI+ KILL + G+ Y C A+R
Sbjct: 162 LVKVDDTEVISFLLSTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGMDYICTTAER 221
Query: 237 FFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQ 296
FFAV R L M + LVEQPSPRLLKHII CY RLS +PRAC L CLP D F++
Sbjct: 222 FFAVGRVLGNMVQSLVEQPSPRLLKHIIRCYLRLSDNPRACAALASCLPDSLRDGSFSNC 281
Query: 297 L 297
L
Sbjct: 282 L 282
Score = 214 (80.4 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 46/95 (48%), Positives = 61/95 (64%)
Query: 26 ASVAYWIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSS 85
AS + L + E +E ALL LS+ +E+ +DLAPLLWNS GTI+ALLQEI+S+Y L+
Sbjct: 36 ASAEQLVLDLSNPELRENALLELSKKRELFQDLAPLLWNSFGTIAALLQEIVSIYSVLAP 95
Query: 86 PNLTETASTRVSNALALFQVTFTSIGSSFAILKVY 120
PNLT S RV N+LAL Q + + LK +
Sbjct: 96 PNLTPAQSNRVCNSLALLQCVASHSDTRMLFLKAH 130
>TAIR|locus:2182315 [details] [associations]
symbol:AT5G12980 "AT5G12980" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0007275 "multicellular organismal
development" evidence=ISS] InterPro:IPR016024 Pfam:PF04078
EMBL:CP002688 SUPFAM:SSF48371 EMBL:AL353013 HOGENOM:HOG000192069
KO:K12606 InterPro:IPR007216 PANTHER:PTHR12262
ProtClustDB:CLSN2685062 EMBL:AY161167 IPI:IPI00546387 PIR:T49912
RefSeq:NP_196802.1 UniGene:At.19618 UniGene:At.49791
ProteinModelPortal:Q9LXU1 SMR:Q9LXU1 PRIDE:Q9LXU1
EnsemblPlants:AT5G12980.1 GeneID:831138 KEGG:ath:AT5G12980
TAIR:At5g12980 InParanoid:Q9LXU1 OMA:RTMENGS PhylomeDB:Q9LXU1
Genevestigator:Q9LXU1 Uniprot:Q9LXU1
Length = 311
Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 104/182 (57%), Positives = 123/182 (67%)
Query: 118 KVYNCMATFRAIKSSM-TRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
+V N +A + + S TR+ L + A LPLYLY FLNT K +P EYLRLTSLGVIG
Sbjct: 101 RVCNALALLQCVASHTDTRM---LFLKAHLPLYLYAFLNTSSKSRPFEYLRLTSLGVIGA 157
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
LVK DD E IRFLLQTEI P CL +ME GS+LSK VATFI+ K+LL + GL+Y C A+R
Sbjct: 158 LVKVDDTEVIRFLLQTEIVPLCLRTMENGSELSKTVATFIVQKVLLDDVGLEYMCTTAER 217
Query: 237 FFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQ 296
FFA+ R L M L E PS RLLKHII CY RL+ +PRACD L CLP D F+
Sbjct: 218 FFALGRVLGNMVTSLAEGPSARLLKHIIRCYLRLTDNPRACDALGSCLPDLLRDATFSGC 277
Query: 297 LH 298
L+
Sbjct: 278 LY 279
Score = 200 (75.5 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 46/95 (48%), Positives = 59/95 (62%)
Query: 26 ASVAYWIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSS 85
+S I L + E +E AL LS+ +EI +DLAPLLW+S+GTI ALLQEII+VY LS
Sbjct: 32 SSAEQLILDLSNPELRENALHELSKKREIFQDLAPLLWHSVGTIPALLQEIIAVYPALSP 91
Query: 86 PNLTETASTRVSNALALFQVTFTSIGSSFAILKVY 120
P +T S RV NALAL Q + + LK +
Sbjct: 92 PTMTPAQSNRVCNALALLQCVASHTDTRMLFLKAH 126
>FB|FBgn0032089 [details] [associations]
symbol:Rcd-1r "Rcd-1 related" species:7227 "Drosophila
melanogaster" [GO:0003674 "molecular_function" evidence=ND]
[GO:0007283 "spermatogenesis" evidence=IEP;IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0022414 "reproductive process"
evidence=IMP] Pfam:PF04078 EMBL:AE014134 GO:GO:0007283
eggNOG:COG5209 GeneTree:ENSGT00390000001225 InterPro:IPR007216
PANTHER:PTHR12262 EMBL:AY075185 EMBL:HM358897 EMBL:HM358903
EMBL:HM358906 EMBL:HM358910 RefSeq:NP_609269.1 UniGene:Dm.19803
SMR:Q9VLF2 IntAct:Q9VLF2 MINT:MINT-791139 STRING:Q9VLF2
EnsemblMetazoa:FBtr0079779 GeneID:34229 KEGG:dme:Dmel_CG9573
UCSC:CG9573-RA CTD:34229 FlyBase:FBgn0032089 InParanoid:Q9VLF2
OrthoDB:EOG4GTHVP GenomeRNAi:34229 NextBio:787499 Uniprot:Q9VLF2
Length = 290
Score = 338 (124.0 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 72/151 (47%), Positives = 97/151 (64%)
Query: 145 KLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTSMEV 204
++P+YLYPFL+T K +P E LRLT+LGVI L ++ D E + FL+ +E+ P CLT+M
Sbjct: 110 QIPMYLYPFLSTTFKSRPFEQLRLTTLGVINALAETGDTEVLIFLIWSEVVPHCLTNMVR 169
Query: 205 GSDLSKQVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHII 264
GS L+K AT I+ KILL E GL Y C DRF VA L +M +++ P R+LKH++
Sbjct: 170 GSKLTKIAATSILEKILLDEMGLTYICENHDRFSQVAITLGKMVIHMLKFPCLRVLKHVV 229
Query: 265 CCYHRLSQSPRACDGLRCCLPLWFGDRKFTS 295
CY L+++ RA LR CLP D FTS
Sbjct: 230 RCYLLLTENARARSALRVCLPDLLRDGTFTS 260
Score = 143 (55.4 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 32/65 (49%), Positives = 42/65 (64%)
Query: 40 TKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTETASTRVSNA 99
T+E ALL LS+N DLAP+LW S+GT LLQEI+++Y +++P L S RV A
Sbjct: 32 TRETALLELSKNTYA--DLAPMLWKSVGTTCTLLQEIVNIYPIITTPVLKANQSNRVCYA 89
Query: 100 LALFQ 104
L L Q
Sbjct: 90 LTLLQ 94
>GENEDB_PFALCIPARUM|PFE0375w [details] [associations]
symbol:PFE0375w "cell differentiation protein
rcd1, putative" species:5833 "Plasmodium falciparum" [GO:0030154
"cell differentiation" evidence=ISS] InterPro:IPR016024
Pfam:PF04078 GO:GO:0030154 SUPFAM:SSF48371 EMBL:AL844504 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 OMA:EININIP
RefSeq:XP_001351634.1 ProteinModelPortal:Q8I427 SMR:Q8I427
MINT:MINT-1662755 EnsemblProtists:PFE0375w:mRNA GeneID:812876
KEGG:pfa:PFE0375w EuPathDB:PlasmoDB:PF3D7_0507600 Uniprot:Q8I427
Length = 652
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 96/195 (49%), Positives = 126/195 (64%)
Query: 91 TASTRVSNALALFQVTFTSIGSSFAILKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYL 150
T +T + ++++ + ++ + +V N +A + + S L A +PL+L
Sbjct: 269 TITTLLQEIVSIYPQLSPPLLTTSSSNRVCNSLALLQCVASHPETKQHFLN--AHIPLFL 326
Query: 151 YPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSK 210
YPFLN + K +P EYLRLTSLGVIG LVK D+PE I FLLQTEI P CL ME GS+LSK
Sbjct: 327 YPFLNAESKNRPFEYLRLTSLGVIGALVKVDNPEVINFLLQTEIIPLCLRIMETGSELSK 386
Query: 211 QVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIICCYHRL 270
VATFI+ KIL+ E GL Y C +RF+AV+ LA M LVE PS RLLKHI+ CY RL
Sbjct: 387 TVATFIVQKILIDELGLNYICATPERFYAVSTVLANMVNSLVENPSSRLLKHIVRCYLRL 446
Query: 271 SQSPRACDGLRCCLP 285
S++ RA + L+ CLP
Sbjct: 447 SENARALEALKYCLP 461
Score = 186 (70.5 bits), Expect = 9.6e-12, P = 9.6e-12
Identities = 38/66 (57%), Positives = 49/66 (74%)
Query: 39 ETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTETASTRVSN 98
E +E ALL LS+ +E D+AP+LWNS GTI+ LLQEI+S+Y LS P LT ++S RV N
Sbjct: 240 EKRENALLELSRKRETYHDIAPVLWNSFGTITTLLQEIVSIYPQLSPPLLTTSSSNRVCN 299
Query: 99 ALALFQ 104
+LAL Q
Sbjct: 300 SLALLQ 305
>UNIPROTKB|Q8I427 [details] [associations]
symbol:PFE0375w "Cell differentiation protein rcd1,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0030154
"cell differentiation" evidence=ISS] InterPro:IPR016024
Pfam:PF04078 GO:GO:0030154 SUPFAM:SSF48371 EMBL:AL844504 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 OMA:EININIP
RefSeq:XP_001351634.1 ProteinModelPortal:Q8I427 SMR:Q8I427
MINT:MINT-1662755 EnsemblProtists:PFE0375w:mRNA GeneID:812876
KEGG:pfa:PFE0375w EuPathDB:PlasmoDB:PF3D7_0507600 Uniprot:Q8I427
Length = 652
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 96/195 (49%), Positives = 126/195 (64%)
Query: 91 TASTRVSNALALFQVTFTSIGSSFAILKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYL 150
T +T + ++++ + ++ + +V N +A + + S L A +PL+L
Sbjct: 269 TITTLLQEIVSIYPQLSPPLLTTSSSNRVCNSLALLQCVASHPETKQHFLN--AHIPLFL 326
Query: 151 YPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSK 210
YPFLN + K +P EYLRLTSLGVIG LVK D+PE I FLLQTEI P CL ME GS+LSK
Sbjct: 327 YPFLNAESKNRPFEYLRLTSLGVIGALVKVDNPEVINFLLQTEIIPLCLRIMETGSELSK 386
Query: 211 QVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIICCYHRL 270
VATFI+ KIL+ E GL Y C +RF+AV+ LA M LVE PS RLLKHI+ CY RL
Sbjct: 387 TVATFIVQKILIDELGLNYICATPERFYAVSTVLANMVNSLVENPSSRLLKHIVRCYLRL 446
Query: 271 SQSPRACDGLRCCLP 285
S++ RA + L+ CLP
Sbjct: 447 SENARALEALKYCLP 461
Score = 186 (70.5 bits), Expect = 9.6e-12, P = 9.6e-12
Identities = 38/66 (57%), Positives = 49/66 (74%)
Query: 39 ETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTETASTRVSN 98
E +E ALL LS+ +E D+AP+LWNS GTI+ LLQEI+S+Y LS P LT ++S RV N
Sbjct: 240 EKRENALLELSRKRETYHDIAPVLWNSFGTITTLLQEIVSIYPQLSPPLLTTSSSNRVCN 299
Query: 99 ALALFQ 104
+LAL Q
Sbjct: 300 SLALLQ 305
>DICTYBASE|DDB_G0275289 [details] [associations]
symbol:DDB_G0275289 "cell differentiation family,
Rcd1-like protein" species:44689 "Dictyostelium discoideum"
[GO:0003674 "molecular_function" evidence=ND] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005634 "nucleus" evidence=IC] InterPro:IPR016024
dictyBase:DDB_G0275289 Pfam:PF04078 GO:GO:0005634 SUPFAM:SSF48371
GO:GO:0006357 EMBL:AAFI02000013 eggNOG:COG5209 InterPro:IPR007216
PANTHER:PTHR12262 RefSeq:XP_643823.1 ProteinModelPortal:Q553Y8
EnsemblProtists:DDB0220000 GeneID:8619870 KEGG:ddi:DDB_G0275289
InParanoid:Q553Y8 OMA:EININIP Uniprot:Q553Y8
Length = 941
Score = 303 (111.7 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
Identities = 71/175 (40%), Positives = 102/175 (58%)
Query: 118 KVYNCMATFRAIKSSM-TRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
KV N + F+ I S TR L + AK+ Y+YP+L+T K KP EYLRLT+LGVI T
Sbjct: 584 KVCNILNIFQVIASDPETRS---LFIQAKVISYIYPYLSTNSKSKPFEYLRLTTLGVINT 640
Query: 177 LVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADR 236
++K + + I +L++ +I CL ME G+DLSK + FI+ KIL ++GL Y R
Sbjct: 641 VIKQESQDIINYLIEIDISTPCLKIMENGNDLSKTASAFILQKILNWDDGLNYFVQSPKR 700
Query: 237 FFAVARALAQMTEKLV-EQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGD 290
+ L M E ++ + S RLLKHI+ CY RLS++ + D L +P F +
Sbjct: 701 LSDLTNCLKYMVEAMIPDHMSSRLLKHIVRCYLRLSENLKIRDQLIGWMPTCFSN 755
Score = 114 (45.2 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
Identities = 30/76 (39%), Positives = 43/76 (56%)
Query: 32 IQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPN--LT 89
I L + +E AL + + K+ LA L+W + IS LLQEI+++Y +S PN L
Sbjct: 519 ISDLLEPQKREEALCEIVKRKDSIPSLASLVWFTPCVISVLLQEIMNLYNFISPPNPKLK 578
Query: 90 ETASTRVSNALALFQV 105
AS +V N L +FQV
Sbjct: 579 ARASNKVCNILNIFQV 594
>WB|WBGene00016139 [details] [associations]
symbol:ntl-9 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0031581 "hemidesmosome assembly" evidence=IGI]
Pfam:PF04078 GO:GO:0009792 eggNOG:COG5209
GeneTree:ENSGT00390000001225 HOGENOM:HOG000192069 KO:K12606
OMA:CLPDQLR InterPro:IPR007216 PANTHER:PTHR12262 GO:GO:0031581
EMBL:FO080680 PIR:F88445 RefSeq:NP_498048.2
ProteinModelPortal:Q18224 SMR:Q18224 STRING:Q18224 PaxDb:Q18224
EnsemblMetazoa:C26E6.3 GeneID:175669 KEGG:cel:CELE_C26E6.3
UCSC:C26E6.3 CTD:175669 WormBase:C26E6.3 InParanoid:Q18224
NextBio:889142 Uniprot:Q18224
Length = 321
Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 85/188 (45%), Positives = 110/188 (58%)
Query: 91 TASTRVSNALALFQVTFTSIGSSFAILKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYL 150
T S + +A++ + ++ +V N +A + + S L A +PLYL
Sbjct: 70 TMSALLQEVVAIYPAIMPANLTAAQSNRVCNALALMQCVASHRDTRGPFLH--AHIPLYL 127
Query: 151 YPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPE----AIRFLLQTEIFPCCLTSMEVGS 206
YPFL+T + EYLRLTSLGVIG LVK+DD E I FLL TEI P CL ME G+
Sbjct: 128 YPFLHTTKVSRSFEYLRLTSLGVIGALVKTDDKEQLLIVINFLLSTEIIPLCLRIMEQGT 187
Query: 207 DLSKQVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIICC 266
+LSK VATFI+ KILL + GL Y C +RF V L +M KL +PS RLLKH++ C
Sbjct: 188 ELSKTVATFILQKILLDDTGLLYICQTYERFSHVVLILGKMVMKLTREPSVRLLKHVVRC 247
Query: 267 YHRLSQSP 274
Y RLS +P
Sbjct: 248 YSRLSDNP 255
Score = 162 (62.1 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 35/77 (45%), Positives = 48/77 (62%)
Query: 28 VAYWIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPN 87
+ WI L+ +E ALL LS+ ++ DL LW+S GT+SALLQE++++Y + N
Sbjct: 30 IMQWIIDLRDPPKREAALLELSKKRDSVPDLPIWLWHSFGTMSALLQEVVAIYPAIMPAN 89
Query: 88 LTETASTRVSNALALFQ 104
LT S RV NALAL Q
Sbjct: 90 LTAAQSNRVCNALALMQ 106
>TAIR|locus:2060221 [details] [associations]
symbol:AT2G32550 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0007275 "multicellular
organismal development" evidence=ISS] Pfam:PF04078 EMBL:CP002685
GenomeReviews:CT485783_GR eggNOG:COG5209 KO:K12606
InterPro:IPR007216 PANTHER:PTHR12262 EMBL:AY954810 IPI:IPI00519021
RefSeq:NP_180814.2 UniGene:At.38054 ProteinModelPortal:Q58FZ9
SMR:Q58FZ9 PRIDE:Q58FZ9 DNASU:817816 EnsemblPlants:AT2G32550.1
GeneID:817816 KEGG:ath:AT2G32550 TAIR:At2g32550
HOGENOM:HOG000137501 InParanoid:Q58FZ9 OMA:LWESKNT PhylomeDB:Q58FZ9
ProtClustDB:CLSN2685062 Genevestigator:Q58FZ9 Uniprot:Q58FZ9
Length = 322
Score = 267 (99.0 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 66/197 (33%), Positives = 114/197 (57%)
Query: 117 LKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT 176
L+VYN F+++ S + AK+P Y YP ++T +K E +RL +LGVI
Sbjct: 122 LRVYNVFLLFQSMACHPDT--SRQFLRAKMPNYFYPLMDTGLIDKSDECMRLAALGVIAH 179
Query: 177 LVKSDDPEAI-RFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLAD 235
++K+ + A+ R+L+++ + C+ +E GS +K+VA +I+ KI+ ++GL YCCVLAD
Sbjct: 180 MLKASEDGAVNRYLMESGVVGFCVKPIEFGSTETKKVALYILDKIMSTDQGLYYCCVLAD 239
Query: 236 RFFAVARALAQMT---EKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRK 292
RF+ + L ++ +V PS L + CY +LSQ+ RA +G+R P D
Sbjct: 240 RFYVIDELLKKVLFYLSNMVRPPSS-LFSLVTGCYVKLSQNSRARNGIRRYTPFLLFDGT 298
Query: 293 FTSQLHVRSSKTPISSS 309
F S+L+ ++ P++++
Sbjct: 299 F-SRLY---AEDPVAAN 311
Score = 57 (25.1 bits), Expect = 1.4e-27, Sum P(2) = 1.4e-27
Identities = 10/12 (83%), Positives = 12/12 (100%)
Query: 5 LNLPESLYEDYS 16
+NLP+SLYEDYS
Sbjct: 6 VNLPDSLYEDYS 17
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.135 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 309 309 0.00079 116 3 11 22 0.48 33
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 27
No. of states in DFA: 606 (64 KB)
Total size of DFA: 207 KB (2116 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 25.68u 0.10s 25.78t Elapsed: 00:00:01
Total cpu time: 25.69u 0.10s 25.79t Elapsed: 00:00:01
Start: Thu May 9 19:23:49 2013 End: Thu May 9 19:23:50 2013