BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037700
(309 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R6Z6|RCD1_PONAB Cell differentiation protein RCD1 homolog OS=Pongo abelii GN=RQCD1
PE=2 SV=2
Length = 299
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 133/267 (49%), Positives = 168/267 (62%), Gaps = 25/267 (9%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S ET+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQVTFTSIGSSFAILKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYL 150
S RV NALAL Q C+A+ +S+ + A +PL+L
Sbjct: 85 HQSNRVCNALALLQ-----------------CVASHPETRSAF--------LAAHIPLFL 119
Query: 151 YPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSK 210
YPFL+T K +P EYLRLTSLGVIG LVK+D+ E I FLL TEI P CL ME GS+LSK
Sbjct: 120 YPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSK 179
Query: 211 QVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIICCYHRL 270
VATFI+ KILL + GL Y C +RF VA L +M +L ++PS RLLKH++ CY RL
Sbjct: 180 TVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL 239
Query: 271 SQSPRACDGLRCCLPLWFGDRKFTSQL 297
S +PRA + LR CLP D F L
Sbjct: 240 SDNPRAREALRQCLPDQLKDTTFAQVL 266
>sp|Q92600|RCD1_HUMAN Cell differentiation protein RCD1 homolog OS=Homo sapiens GN=RQCD1
PE=1 SV=1
Length = 299
Score = 241 bits (615), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 133/267 (49%), Positives = 168/267 (62%), Gaps = 25/267 (9%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S ET+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQVTFTSIGSSFAILKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYL 150
S RV NALAL Q C+A+ +S+ + A +PL+L
Sbjct: 85 HQSNRVCNALALLQ-----------------CVASHPETRSAF--------LAAHIPLFL 119
Query: 151 YPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSK 210
YPFL+T K +P EYLRLTSLGVIG LVK+D+ E I FLL TEI P CL ME GS+LSK
Sbjct: 120 YPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSK 179
Query: 211 QVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIICCYHRL 270
VATFI+ KILL + GL Y C +RF VA L +M +L ++PS RLLKH++ CY RL
Sbjct: 180 TVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL 239
Query: 271 SQSPRACDGLRCCLPLWFGDRKFTSQL 297
S +PRA + LR CLP D F L
Sbjct: 240 SDNPRAREALRQCLPDQLKDTTFAQVL 266
>sp|Q5PQL2|RCD1_RAT Cell differentiation protein RCD1 homolog OS=Rattus norvegicus
GN=Rqcd1 PE=1 SV=1
Length = 299
Score = 241 bits (614), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 133/267 (49%), Positives = 168/267 (62%), Gaps = 25/267 (9%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S ET+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQVTFTSIGSSFAILKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYL 150
S RV NALAL Q C+A+ +S+ + A +PL+L
Sbjct: 85 HQSNRVCNALALLQ-----------------CVASHPETRSAF--------LAAHIPLFL 119
Query: 151 YPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSK 210
YPFL+T K +P EYLRLTSLGVIG LVK+D+ E I FLL TEI P CL ME GS+LSK
Sbjct: 120 YPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSK 179
Query: 211 QVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIICCYHRL 270
VATFI+ KILL + GL Y C +RF VA L +M +L ++PS RLLKH++ CY RL
Sbjct: 180 TVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL 239
Query: 271 SQSPRACDGLRCCLPLWFGDRKFTSQL 297
S +PRA + LR CLP D F L
Sbjct: 240 SDNPRAREALRQCLPDQLKDTTFAQVL 266
>sp|Q9JKY0|RCD1_MOUSE Cell differentiation protein RCD1 homolog OS=Mus musculus GN=Rqcd1
PE=1 SV=1
Length = 299
Score = 241 bits (614), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 133/267 (49%), Positives = 168/267 (62%), Gaps = 25/267 (9%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S ET+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQVTFTSIGSSFAILKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYL 150
S RV NALAL Q C+A+ +S+ + A +PL+L
Sbjct: 85 HQSNRVCNALALLQ-----------------CVASHPETRSAF--------LAAHIPLFL 119
Query: 151 YPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSK 210
YPFL+T K +P EYLRLTSLGVIG LVK+D+ E I FLL TEI P CL ME GS+LSK
Sbjct: 120 YPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSK 179
Query: 211 QVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIICCYHRL 270
VATFI+ KILL + GL Y C +RF VA L +M +L ++PS RLLKH++ CY RL
Sbjct: 180 TVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL 239
Query: 271 SQSPRACDGLRCCLPLWFGDRKFTSQL 297
S +PRA + LR CLP D F L
Sbjct: 240 SDNPRAREALRQCLPDQLKDTTFAQVL 266
>sp|Q4R347|RCD1_MACFA Cell differentiation protein RCD1 homolog OS=Macaca fascicularis
GN=RQCD1 PE=2 SV=1
Length = 299
Score = 241 bits (614), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 133/267 (49%), Positives = 168/267 (62%), Gaps = 25/267 (9%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S ET+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQVTFTSIGSSFAILKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYL 150
S RV NALAL Q C+A+ +S+ + A +PL+L
Sbjct: 85 HQSNRVCNALALLQ-----------------CVASHPETRSAF--------LAAHIPLFL 119
Query: 151 YPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSK 210
YPFL+T K +P EYLRLTSLGVIG LVK+D+ E I FLL TEI P CL ME GS+LSK
Sbjct: 120 YPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSK 179
Query: 211 QVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIICCYHRL 270
VATFI+ KILL + GL Y C +RF VA L +M +L ++PS RLLKH++ CY RL
Sbjct: 180 TVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL 239
Query: 271 SQSPRACDGLRCCLPLWFGDRKFTSQL 297
S +PRA + LR CLP D F L
Sbjct: 240 SDNPRAREALRQCLPDQLKDTTFAQVL 266
>sp|A7MB47|RCD1_BOVIN Cell differentiation protein RCD1 homolog OS=Bos taurus GN=RQCD1
PE=2 SV=1
Length = 299
Score = 241 bits (614), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 133/267 (49%), Positives = 168/267 (62%), Gaps = 25/267 (9%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S ET+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQVTFTSIGSSFAILKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYL 150
S RV NALAL Q C+A+ +S+ + A +PL+L
Sbjct: 85 HQSNRVCNALALLQ-----------------CVASHPETRSAF--------LAAHIPLFL 119
Query: 151 YPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSK 210
YPFL+T K +P EYLRLTSLGVIG LVK+D+ E I FLL TEI P CL ME GS+LSK
Sbjct: 120 YPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSK 179
Query: 211 QVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIICCYHRL 270
VATFI+ KILL + GL Y C +RF VA L +M +L ++PS RLLKH++ CY RL
Sbjct: 180 TVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL 239
Query: 271 SQSPRACDGLRCCLPLWFGDRKFTSQL 297
S +PRA + LR CLP D F L
Sbjct: 240 SDNPRAREALRQCLPDQLKDTTFAQVL 266
>sp|Q6P819|RCD1_XENTR Cell differentiation protein RCD1 homolog OS=Xenopus tropicalis
GN=rqcd1 PE=2 SV=1
Length = 299
Score = 239 bits (611), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/267 (49%), Positives = 168/267 (62%), Gaps = 25/267 (9%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S +T+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPDTRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQVTFTSIGSSFAILKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYL 150
S RV NALAL Q C+A+ +S+ + A +PL+L
Sbjct: 85 HQSNRVCNALALLQ-----------------CVASHPETRSAF--------LAAHIPLFL 119
Query: 151 YPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSK 210
YPFL+T K +P EYLRLTSLGVIG LVK+D+ E I FLL TEI P CL ME GS+LSK
Sbjct: 120 YPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSK 179
Query: 211 QVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIICCYHRL 270
VATFI+ KILL + GL Y C +RF VA L +M +L ++PS RLLKH++ CY RL
Sbjct: 180 TVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL 239
Query: 271 SQSPRACDGLRCCLPLWFGDRKFTSQL 297
S +PRA + LR CLP D F L
Sbjct: 240 SDNPRAREALRQCLPDQLKDTTFAQVL 266
>sp|Q6IP65|RCD1_XENLA Cell differentiation protein RCD1 homolog OS=Xenopus laevis
GN=rqcd1 PE=2 SV=1
Length = 299
Score = 239 bits (611), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/267 (49%), Positives = 168/267 (62%), Gaps = 25/267 (9%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S +T+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 25 WINELSSPDTRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTA 84
Query: 91 TASTRVSNALALFQVTFTSIGSSFAILKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYL 150
S RV NALAL Q C+A+ +S+ + A +PL+L
Sbjct: 85 HQSNRVCNALALLQ-----------------CVASHPETRSAF--------LAAHIPLFL 119
Query: 151 YPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSK 210
YPFL+T K +P EYLRLTSLGVIG LVK+D+ E I FLL TEI P CL ME GS+LSK
Sbjct: 120 YPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSK 179
Query: 211 QVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIICCYHRL 270
VATFI+ KILL + GL Y C +RF VA L +M +L ++PS RLLKH++ CY RL
Sbjct: 180 TVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL 239
Query: 271 SQSPRACDGLRCCLPLWFGDRKFTSQL 297
S +PRA + LR CLP D F L
Sbjct: 240 SDNPRAREALRQCLPDQLKDTTFAQVL 266
>sp|Q6NWL4|RCD1_DANRE Cell differentiation protein RCD1 homolog OS=Danio rerio GN=rqcd1
PE=2 SV=1
Length = 298
Score = 237 bits (604), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 132/267 (49%), Positives = 167/267 (62%), Gaps = 25/267 (9%)
Query: 31 WIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTE 90
WI L S ET+E ALL LS+ +E DLAP+LW+S GTI+ALLQEI+++Y +++ P LT
Sbjct: 24 WINELSSPETRENALLELSKKRESVTDLAPMLWHSCGTIAALLQEIVNIYPSINPPTLTA 83
Query: 91 TASTRVSNALALFQVTFTSIGSSFAILKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYL 150
S RV NALAL Q C+A+ +S+ + A +PL+L
Sbjct: 84 HQSNRVCNALALLQ-----------------CVASHVETRSAF--------LAAHIPLFL 118
Query: 151 YPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSK 210
YPFL+T K +P EYLRLTSLGVIG LVK+D+ E I FLL TEI P CL ME GS+LSK
Sbjct: 119 YPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSK 178
Query: 211 QVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIICCYHRL 270
VATFI+ KILL + GL Y C +RF VA L +M +L ++PS RLLKH++ CY RL
Sbjct: 179 TVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRL 238
Query: 271 SQSPRACDGLRCCLPLWFGDRKFTSQL 297
S + RA + LR CLP D F L
Sbjct: 239 SDNSRAREALRQCLPDQLKDTTFAQVL 265
>sp|Q92368|RCD1_SCHPO Cell differentiation protein rcd1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rcd1 PE=3 SV=1
Length = 283
Score = 229 bits (583), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 134/277 (48%), Positives = 167/277 (60%), Gaps = 25/277 (9%)
Query: 21 PVHGPASVAYWIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVY 80
P + PA V WI L S ++E+AL+ LS+ +E +DLA +LW+S G ++ALLQEIISVY
Sbjct: 7 PNYEPALVYEWIIQLVSGTSREQALVELSRKREQYEDLALILWHSYGVMTALLQEIISVY 66
Query: 81 RTLSSPNLTETASTRVSNALALFQVTFTSIGSSFAILKVYNCMATFRAIKSSMTRLISVL 140
L+ P LT S RV NALAL Q C+A+ + +
Sbjct: 67 PLLNPPTLTGPTSNRVCNALALLQ-----------------CIASHPETR--------IH 101
Query: 141 MVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLT 200
+ A + L+LYPFLNT K KP EYLRLTSLGVIG LVK+D PE I FLL TEI P CL
Sbjct: 102 FLNAHITLFLYPFLNTLSKSKPFEYLRLTSLGVIGALVKNDSPEVINFLLSTEIIPLCLR 161
Query: 201 SMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLL 260
ME GS+LSK VA FI+ K L + GL+Y C +RF+AVA L M +LV+ + RLL
Sbjct: 162 IMENGSELSKTVAIFIVQKFLCDDVGLQYICQTYERFYAVASVLNNMVMQLVDSFAFRLL 221
Query: 261 KHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQL 297
KH+I CY RLS +PRA + LR CLP D F L
Sbjct: 222 KHVIRCYLRLSDNPRAREALRHCLPEPLRDATFAQVL 258
>sp|P53829|CAF40_YEAST Protein CAF40 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=CAF40 PE=1 SV=1
Length = 373
Score = 199 bits (506), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 122/272 (44%), Positives = 153/272 (56%), Gaps = 26/272 (9%)
Query: 27 SVAYWIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSP 86
+V +WI L KE+ALL L + +E DLA +LW+S G +++LL EIISVY L
Sbjct: 105 NVYHWICQLTYGPQKEQALLELGRKREQFDDLAVVLWSSFGVMTSLLNEIISVYPMLQPQ 164
Query: 87 NLTETASTRVSNALALFQVTFTSIGSSFAILKVYNCMATFRAIKSSMTRLISVLMVLAKL 146
L+ S RV NAL L Q C+A+ K L + A +
Sbjct: 165 MLSNNLSNRVCNALVLLQ-----------------CVASHPETKH--------LFLQAHI 199
Query: 147 PLYLYPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTSMEVGS 206
PL+L+PFLNT +++ EYLRLTSLGVIG LVK+D + I FLL+T+I P CL ME S
Sbjct: 200 PLFLFPFLNTTSRQRTFEYLRLTSLGVIGALVKNDSQDVITFLLRTDIVPLCLRIMESSS 259
Query: 207 DLSKQVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKL-VEQPSPRLLKHIIC 265
+LSK VA FI+ KILL + GL+Y C +RF+AV L M E L V P RLLKHII
Sbjct: 260 ELSKTVAIFILQKILLDDVGLQYICATLERFYAVTNVLKDMVEHLTVSTPPGRLLKHIIR 319
Query: 266 CYHRLSQSPRACDGLRCCLPLWFGDRKFTSQL 297
CY RLS A L+ LP D FT L
Sbjct: 320 CYLRLSDDLEARRLLKIVLPAKLRDNTFTEVL 351
>sp|Q6UY09|CEA20_HUMAN Carcinoembryonic antigen-related cell adhesion molecule 20 OS=Homo
sapiens GN=CEACAM20 PE=2 SV=1
Length = 585
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 153 FLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFP-CCLTSMEVGSDLSKQ 211
FL+ K P E ++L S G +V+ + ++ FL +T+ P C T + S LS
Sbjct: 153 FLDVKYGPDPVE-IKLESGVASGEVVEVMEGSSMTFLAETKSHPPCAYTWFLLDSILSHT 211
Query: 212 VATFIIYKILLHEEGLKYCCV 232
TF I+ + EGL C V
Sbjct: 212 TRTFTIHAVSREHEGLYRCLV 232
>sp|Q9FGJ6|ATL79_ARATH RING-H2 finger protein ATL79 OS=Arabidopsis thaliana GN=ATL79 PE=2
SV=1
Length = 166
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 133 MTRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQT 192
++ LI L + A + +L P L T+D KP +S TLV S D E +
Sbjct: 48 ISALICALSLYAAIRCFLRPTLETEDDHKPDPEAAASSTPTTPTLVYSSDLELAGAEAEC 107
Query: 193 EIFPCCLTSMEVGSDL 208
I CL+ E G +
Sbjct: 108 AI---CLSEFEQGESI 120
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,825,727
Number of Sequences: 539616
Number of extensions: 3544056
Number of successful extensions: 7936
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7910
Number of HSP's gapped (non-prelim): 18
length of query: 309
length of database: 191,569,459
effective HSP length: 117
effective length of query: 192
effective length of database: 128,434,387
effective search space: 24659402304
effective search space used: 24659402304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)