Query 037700
Match_columns 309
No_of_seqs 116 out of 158
Neff 3.5
Searched_HMMs 46136
Date Fri Mar 29 03:34:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037700.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037700hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04078 Rcd1: Cell differenti 100.0 6E-117 1E-121 818.6 13.6 250 30-304 1-250 (262)
2 KOG3036 Protein involved in ce 100.0 2E-114 5E-119 801.3 19.2 272 5-304 2-279 (293)
3 COG5209 RCD1 Uncharacterized p 100.0 3.1E-98 7E-103 691.4 14.9 254 26-304 47-300 (315)
4 cd00020 ARM Armadillo/beta-cat 90.2 0.63 1.4E-05 35.3 4.8 85 122-220 33-118 (120)
5 cd00020 ARM Armadillo/beta-cat 89.4 1.5 3.1E-05 33.3 6.2 117 141-271 3-119 (120)
6 PF10508 Proteasom_PSMB: Prote 77.4 43 0.00094 34.2 12.5 69 161-230 88-156 (503)
7 PF10508 Proteasom_PSMB: Prote 74.9 20 0.00043 36.6 9.4 194 39-277 175-394 (503)
8 KOG2160 Armadillo/beta-catenin 72.7 12 0.00026 37.4 7.0 146 37-225 96-243 (342)
9 PF05804 KAP: Kinesin-associat 68.6 31 0.00067 37.5 9.4 135 122-281 316-450 (708)
10 PF03224 V-ATPase_H_N: V-ATPas 64.5 6.1 0.00013 37.2 3.0 138 133-282 43-189 (312)
11 PLN03200 cellulose synthase-in 63.9 1.1E+02 0.0023 37.6 13.2 89 183-274 1222-1330(2102)
12 PLN03200 cellulose synthase-in 63.8 78 0.0017 38.7 12.1 210 19-281 6-228 (2102)
13 PLN00211 predicted protein; Pr 29.0 39 0.00084 26.3 1.7 19 68-86 31-49 (61)
14 PF05804 KAP: Kinesin-associat 28.7 1.4E+02 0.003 32.7 6.4 97 180-285 277-375 (708)
15 PF10167 NEP: Uncharacterised 26.2 1E+02 0.0022 26.6 3.9 35 233-267 6-43 (118)
16 cd07920 Pumilio Pumilio-family 25.6 2E+02 0.0043 26.5 6.1 13 211-223 91-103 (322)
17 PF13251 DUF4042: Domain of un 25.4 2.6E+02 0.0057 25.4 6.7 106 166-273 2-132 (182)
18 cd06224 REM Guanine nucleotide 22.9 3.7E+02 0.0081 21.1 6.5 50 29-87 3-52 (122)
19 PF03378 CAS_CSE1: CAS/CSE pro 22.8 67 0.0014 32.7 2.6 41 58-104 165-208 (435)
20 PF12231 Rif1_N: Rap1-interact 22.5 3.3E+02 0.0072 26.7 7.3 119 140-273 42-164 (372)
21 PF14225 MOR2-PAG1_C: Cell mor 22.4 1.5E+02 0.0033 28.3 4.8 105 170-274 82-200 (262)
22 PF08569 Mo25: Mo25-like; Int 22.0 2.9E+02 0.0062 27.4 6.7 95 168-264 141-237 (335)
23 cd00256 VATPase_H VATPase_H, r 20.6 3.2E+02 0.007 28.2 6.9 132 140-281 45-182 (429)
24 PF11865 DUF3385: Domain of un 20.5 2.1E+02 0.0046 25.0 5.0 61 204-272 78-138 (160)
25 PF10521 DUF2454: Protein of u 20.2 2.3E+02 0.005 26.7 5.5 77 194-270 120-201 (282)
No 1
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=100.00 E-value=6e-117 Score=818.64 Aligned_cols=250 Identities=61% Similarity=0.934 Sum_probs=232.6
Q ss_pred HHHHHhcCcchHHHHHHHHHhcccccCchhhHhhhhhchHHHHHHHHHHhhccCCCCCCChhhhhhHHHHHHhhhhhhcc
Q 037700 30 YWIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTETASTRVSNALALFQVTFTS 109 (309)
Q Consensus 30 q~I~~L~~~~~Re~AL~eLsk~re~~~dLap~LW~S~Gtia~LLQEIisvYp~Ls~p~Lt~~~SnRVcnaLaLlQ~~~~~ 109 (309)
|||.||++|++||+||+||||+||++|||||+||||||||++|||||+++||+++||+||+++||||||||||||
T Consensus 1 q~i~~L~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ----- 75 (262)
T PF04078_consen 1 QLILDLCNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQ----- 75 (262)
T ss_dssp HHHHHTSSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHH-----
T ss_pred ChhHHhcCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHH-----
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhhhhhhcccccccccccchhhHHHHHHHHHhcCccccccccccccCCCCCcchhhhhhhhhhhhccCChhHHHHHH
Q 037700 110 IGSSFAILKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFL 189 (309)
Q Consensus 110 ~~~~~~~~~~~~cvAshp~~~~~eTR~~~~~Fl~A~iplYLyPfLntt~k~rp~EyLRLtSLGVIgaLvK~dd~evI~fL 189 (309)
|||||| |||. +||+||||+||||||||++|+|||||||||||||||||||+||+|||+||
T Consensus 76 ------------~vAshp-----etr~---~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fL 135 (262)
T PF04078_consen 76 ------------CVASHP-----ETRM---PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFL 135 (262)
T ss_dssp ------------HHHH-T-----TTHH---HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHH
T ss_pred ------------HHHcCh-----HHHH---HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHH
Confidence 999999 9999 99999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccccccccchhhHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHH
Q 037700 190 LQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIICCYHR 269 (309)
Q Consensus 190 L~tEiiPlCLriME~GSelSKtvAtfIlqKIL~~d~GL~YiC~t~eRF~aV~~vL~~mv~~l~~~ps~RLLKhIIrCY~R 269 (309)
++|||||+|||+||.|||+||||||||+||||+||+||+|+|+|+|||+||+++|++||++|+++||+||||||||||+|
T Consensus 136 l~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlR 215 (262)
T PF04078_consen 136 LQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLR 215 (262)
T ss_dssp HCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHH
T ss_pred HhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhhHhhhhhcCCccccchhhhhhhccCCCCC
Q 037700 270 LSQSPRACDGLRCCLPLWFGDRKFTSQLHVRSSKT 304 (309)
Q Consensus 270 Ls~n~rar~aLr~~LP~~Lrd~~f~~~l~~d~~~~ 304 (309)
||||||||++|++|||++|||++|.+++++|++++
T Consensus 216 Lsdnprar~aL~~~LP~~Lrd~~f~~~l~~D~~~k 250 (262)
T PF04078_consen 216 LSDNPRAREALRQCLPDQLRDGTFSNILKDDPSTK 250 (262)
T ss_dssp HTTSTTHHHHHHHHS-GGGTSSTTTTGGCS-HHHH
T ss_pred HccCHHHHHHHHHhCcHHHhcHHHHHHHhcCHHHH
Confidence 99999999999999999999999999999999765
No 2
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=100.00 E-value=2.5e-114 Score=801.31 Aligned_cols=272 Identities=54% Similarity=0.804 Sum_probs=262.9
Q ss_pred CCCCccccCCCCCCCC------CCCChhHHHHHHHHhcCcchHHHHHHHHHhcccccCchhhHhhhhhchHHHHHHHHHH
Q 037700 5 LNLPESLYEDYSTPDL------PVHGPASVAYWIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIIS 78 (309)
Q Consensus 5 ~~~~~~~~~~~~~~~~------~~~~~~~v~q~I~~L~~~~~Re~AL~eLsk~re~~~dLap~LW~S~Gtia~LLQEIis 78 (309)
.|+|+ ++++..+. ...+.|+++|||.++.+|++||+||+||||+||.++|||+++|||+||+++|||||++
T Consensus 2 ~~~p~---p~~s~~~~~~~p~~~~~~~dk~~~~i~~l~~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEiva 78 (293)
T KOG3036|consen 2 ANLPS---PAMSKQQQTPSPGSNASNNDKAYQLILSLVSPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVA 78 (293)
T ss_pred CCCCC---CccchhccCCCCCcccccccchhhHHHHhhCCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHh
Confidence 36776 55555443 2357789999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCChhhhhhHHHHHHhhhhhhcccCchhhhhhhcccccccccccchhhHHHHHHHHHhcCcccccccccccc
Q 037700 79 VYRTLSSPNLTETASTRVSNALALFQVTFTSIGSSFAILKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYLYPFLNTKD 158 (309)
Q Consensus 79 vYp~Ls~p~Lt~~~SnRVcnaLaLlQ~~~~~~~~~~~~~~~~~cvAshp~~~~~eTR~~~~~Fl~A~iplYLyPfLntt~ 158 (309)
+||.|+||++++++||||||||+||| |||||| |||. .||+||||+||||||||++
T Consensus 79 iYp~l~p~~l~~~qsnRVcnaL~LlQ-----------------cvASHp-----dTr~---~FL~A~iPlylYpfL~Tt~ 133 (293)
T KOG3036|consen 79 IYPSLSPPTLTPAQSNRVCNALALLQ-----------------CVASHP-----DTRR---AFLRAHIPLYLYPFLNTTS 133 (293)
T ss_pred cccccCCCCCCccccchHHHHHHHHH-----------------HHhcCc-----chHH---HHHHccChhhhHHhhhccc
Confidence 99999999999999999999999999 999999 9999 9999999999999999999
Q ss_pred CCCCCcchhhhhhhhhhhhccCChhHHHHHHhhccccccccccccccchhhHHHHHHHHHHHhcccccchhhhhhhhhHH
Q 037700 159 KEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADRFF 238 (309)
Q Consensus 159 k~rp~EyLRLtSLGVIgaLvK~dd~evI~fLL~tEiiPlCLriME~GSelSKtvAtfIlqKIL~~d~GL~YiC~t~eRF~ 238 (309)
|+|||||||||||||||||||+||+|||+||++|||||+|||+||.|||+|||||+||+||||+||.||.|+|||+|||+
T Consensus 134 ~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~ 213 (293)
T KOG3036|consen 134 KSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFS 213 (293)
T ss_pred cCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCChhhHhhhhhcCCccccchhhhhhhccCCCCC
Q 037700 239 AVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLRCCLPLWFGDRKFTSQLHVRSSKT 304 (309)
Q Consensus 239 aV~~vL~~mv~~l~~~ps~RLLKhIIrCY~RLs~n~rar~aLr~~LP~~Lrd~~f~~~l~~d~~~~ 304 (309)
||+.+|++||.++++.||+|||||+||||+|||||||||++|++|+||+|||++|+.++++|++++
T Consensus 214 av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL~~clPd~Lrd~tfs~~l~~D~~~k 279 (293)
T KOG3036|consen 214 AVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAALRSCLPDQLRDGTFSLLLKDDPETK 279 (293)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhhCcchhccchHHHHHhcChhHH
Confidence 999999999999999999999999999999999999999999999999999999999999999876
No 3
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=100.00 E-value=3.1e-98 Score=691.43 Aligned_cols=254 Identities=49% Similarity=0.697 Sum_probs=251.1
Q ss_pred hHHHHHHHHhcCcchHHHHHHHHHhcccccCchhhHhhhhhchHHHHHHHHHHhhccCCCCCCChhhhhhHHHHHHhhhh
Q 037700 26 ASVAYWIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTETASTRVSNALALFQV 105 (309)
Q Consensus 26 ~~v~q~I~~L~~~~~Re~AL~eLsk~re~~~dLap~LW~S~Gtia~LLQEIisvYp~Ls~p~Lt~~~SnRVcnaLaLlQ~ 105 (309)
+-++.||.++.....||.||.||+++||++||||..||+|+|+|++|||||||+||.|+|+.|+.+.||||||||+|||
T Consensus 47 alvy~wicqlv~g~~kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQ- 125 (315)
T COG5209 47 ALVYSWICQLVVGNPKEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQ- 125 (315)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHH-
Confidence 4499999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCchhhhhhhcccccccccccchhhHHHHHHHHHhcCccccccccccccCCCCCcchhhhhhhhhhhhccCChhHH
Q 037700 106 TFTSIGSSFAILKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEA 185 (309)
Q Consensus 106 ~~~~~~~~~~~~~~~~cvAshp~~~~~eTR~~~~~Fl~A~iplYLyPfLntt~k~rp~EyLRLtSLGVIgaLvK~dd~ev 185 (309)
|+|||| |||. .|++||||+||||||||++++++|||||||||||||||||+|+++|
T Consensus 126 ----------------claShP-----etk~---~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~v 181 (315)
T COG5209 126 ----------------CLASHP-----ETKK---VFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYV 181 (315)
T ss_pred ----------------HHhcCc-----chhe---eeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHH
Confidence 999999 9999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccccccccccchhhHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHHHHHHhhCCCchhHHHHHH
Q 037700 186 IRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIIC 265 (309)
Q Consensus 186 I~fLL~tEiiPlCLriME~GSelSKtvAtfIlqKIL~~d~GL~YiC~t~eRF~aV~~vL~~mv~~l~~~ps~RLLKhIIr 265 (309)
|+||+.|||||+||||||.|||+|||||.||+||||.||+||+|+|||+|||+||+.||++||+|++..++.|||||+||
T Consensus 182 i~fLltTeivPLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iR 261 (315)
T COG5209 182 IKFLLTTEIVPLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIR 261 (315)
T ss_pred HHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCChhhHhhhhhcCCccccchhhhhhhccCCCCC
Q 037700 266 CYHRLSQSPRACDGLRCCLPLWFGDRKFTSQLHVRSSKT 304 (309)
Q Consensus 266 CY~RLs~n~rar~aLr~~LP~~Lrd~~f~~~l~~d~~~~ 304 (309)
||+||||+|+||.+|+.|+|+.|||.+|+..+++|..+|
T Consensus 262 cYlRLsd~p~aR~lL~~~lP~~Lrd~tfs~vl~dD~~sk 300 (315)
T COG5209 262 CYLRLSDKPHARALLSSKLPDGLRDDTFSLVLADDGGSK 300 (315)
T ss_pred HheeecCCHhHHHHHhccCCccccccHHHHHHHhcCChH
Confidence 999999999999999999999999999999999998765
No 4
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=90.20 E-value=0.63 Score=35.30 Aligned_cols=85 Identities=13% Similarity=0.047 Sum_probs=68.4
Q ss_pred ccccc-ccccchhhHHHHHHHHHhcCccccccccccccCCCCCcchhhhhhhhhhhhccCChhHHHHHHhhccccccccc
Q 037700 122 CMATF-RAIKSSMTRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLT 200 (309)
Q Consensus 122 cvAsh-p~~~~~eTR~~~~~Fl~A~iplYLyPfLntt~k~rp~EyLRLtSLGVIgaLvK~dd~evI~fLL~tEiiPlCLr 200 (309)
-++.+ | +.+. .|++.++.-.|.++|+. +...+|-.+++.++.+... .++....+.+..++|..++
T Consensus 33 ~l~~~~~-----~~~~---~~~~~~~i~~l~~~l~~-----~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~l~~l~~ 98 (120)
T cd00020 33 NLSAGNN-----DNIQ---AVVEAGGLPALVQLLKS-----EDEEVVKAALWALRNLAAG-PEDNKLIVLEAGGVPKLVN 98 (120)
T ss_pred HHhcCCH-----HHHH---HHHHCCChHHHHHHHhC-----CCHHHHHHHHHHHHHHccC-cHHHHHHHHHCCChHHHHH
Confidence 56665 5 7888 88888888888888885 3578999999999999985 4467788888899999999
Q ss_pred cccccchhhHHHHHHHHHHH
Q 037700 201 SMEVGSDLSKQVATFIIYKI 220 (309)
Q Consensus 201 iME~GSelSKtvAtfIlqKI 220 (309)
.|..++.-.+..|.+++..+
T Consensus 99 ~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 99 LLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHh
Confidence 99998877777777776543
No 5
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.40 E-value=1.5 Score=33.29 Aligned_cols=117 Identities=13% Similarity=0.171 Sum_probs=74.6
Q ss_pred HHHhcCccccccccccccCCCCCcchhhhhhhhhhhhccCChhHHHHHHhhccccccccccccccchhhHHHHHHHHHHH
Q 037700 141 MVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKI 220 (309)
Q Consensus 141 Fl~A~iplYLyPfLntt~k~rp~EyLRLtSLGVIgaLvK~dd~evI~fLL~tEiiPlCLriME~GSelSKtvAtfIlqKI 220 (309)
|++.+.--+|-.+|+..+ .++|..++..++.+.+.+ ++....+.+.+++|.++..|..+..--+-.|...+..+
T Consensus 3 ~~~~~~i~~l~~~l~~~~-----~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l 76 (120)
T cd00020 3 VIQAGGLPALVSLLSSSD-----ENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNL 76 (120)
T ss_pred HHHcCChHHHHHHHHcCC-----HHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 344444444445554332 578999999999988864 66677778889999999999988777777788888888
Q ss_pred hcccccchhhhhhhhhHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhc
Q 037700 221 LLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLS 271 (309)
Q Consensus 221 L~~d~GL~YiC~t~eRF~aV~~vL~~mv~~l~~~ps~RLLKhIIrCY~RLs 271 (309)
..+...-. ....-..++..++..+ ..++.+.-++...+-..|+
T Consensus 77 ~~~~~~~~-------~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 77 AAGPEDNK-------LIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLA 119 (120)
T ss_pred ccCcHHHH-------HHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhh
Confidence 66553111 1111112333333333 4457777777776665554
No 6
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=77.36 E-value=43 Score=34.16 Aligned_cols=69 Identities=20% Similarity=0.317 Sum_probs=58.8
Q ss_pred CCCcchhhhhhhhhhhhccCChhHHHHHHhhccccccccccccccchhhHHHHHHHHHHHhcccccchhh
Q 037700 161 KPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYC 230 (309)
Q Consensus 161 rp~EyLRLtSLGVIgaLvK~dd~evI~fLL~tEiiPlCLriME~GSelSKtvAtfIlqKIL~~d~GL~Yi 230 (309)
.|...+|--.+..||-++..+ .+.+..+.+.+++|..+..+..+.+-....|.-++.++..+..|++=+
T Consensus 88 h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l 156 (503)
T PF10508_consen 88 HPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL 156 (503)
T ss_pred CCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH
Confidence 367889998888899988755 457889999999999999999998888888999999999888887644
No 7
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=74.95 E-value=20 Score=36.55 Aligned_cols=194 Identities=22% Similarity=0.187 Sum_probs=124.7
Q ss_pred chHHHHHHHHHhcccccCchhhHhhhhhchHHHHHHHHHHhhccCCCCCCChhhhhhHHHHHHhhhhhhcccCchhhhhh
Q 037700 39 ETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTETASTRVSNALALFQVTFTSIGSSFAILK 118 (309)
Q Consensus 39 ~~Re~AL~eLsk~re~~~dLap~LW~S~Gtia~LLQEIisvYp~Ls~p~Lt~~~SnRVcnaLaLlQ~~~~~~~~~~~~~~ 118 (309)
.-|-+++.-+.+.-..-++.+...|++ |.+..++.|+-+ ...-=--||+-++.
T Consensus 175 ~vR~Rv~el~v~i~~~S~~~~~~~~~s-gll~~ll~eL~~------------dDiLvqlnalell~-------------- 227 (503)
T PF10508_consen 175 IVRCRVYELLVEIASHSPEAAEAVVNS-GLLDLLLKELDS------------DDILVQLNALELLS-------------- 227 (503)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhc-cHHHHHHHHhcC------------ccHHHHHHHHHHHH--------------
Confidence 356555555555545567888888875 777777776543 11111237787777
Q ss_pred hcccccccccccchhhHHHHHHHHHhcCccccccccccccCCCCCcchhhhhhhhhhh------hccCChhHHHHHHhhc
Q 037700 119 VYNCMATFRAIKSSMTRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGT------LVKSDDPEAIRFLLQT 192 (309)
Q Consensus 119 ~~~cvAshp~~~~~eTR~~~~~Fl~A~iplYLyPfLntt~k~rp~EyLRLtSLGVIga------LvK~dd~evI~fLL~t 192 (309)
-+|.++ .... ...+..+.--|+..+... ++.| |+.++-+.|. +...+.++++.-. .
T Consensus 228 ---~La~~~-----~g~~---yL~~~gi~~~L~~~l~~~-~~dp----~~~~~~l~g~~~f~g~la~~~~~~v~~~~--p 289 (503)
T PF10508_consen 228 ---ELAETP-----HGLQ---YLEQQGIFDKLSNLLQDS-EEDP----RLSSLLLPGRMKFFGNLARVSPQEVLELY--P 289 (503)
T ss_pred ---HHHcCh-----hHHH---HHHhCCHHHHHHHHHhcc-ccCC----cccchhhhhHHHHHHHHHhcChHHHHHHH--H
Confidence 788877 7777 667777777777777755 3444 4444444443 5555555554311 2
Q ss_pred cccccccccccccchhhHHHHHHHHHHHhcccccchhh-hhhhhhHHHHHHH-------------------HHHHHHHHh
Q 037700 193 EIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYC-CVLADRFFAVARA-------------------LAQMTEKLV 252 (309)
Q Consensus 193 EiiPlCLriME~GSelSKtvAtfIlqKIL~~d~GL~Yi-C~t~eRF~aV~~v-------------------L~~mv~~l~ 252 (309)
.++....+.++.+..-.+-+|--.+.-|=+..+|..-. .+.-+++.++-.. |+.+...-.
T Consensus 290 ~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~ 369 (503)
T PF10508_consen 290 AFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT 369 (503)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence 34445556778888888888888999999999998888 5554444443333 333333333
Q ss_pred hCCCchhHHHHHHHHHHhcCChhhH
Q 037700 253 EQPSPRLLKHIICCYHRLSQSPRAC 277 (309)
Q Consensus 253 ~~ps~RLLKhIIrCY~RLs~n~rar 277 (309)
+.++.+++.-.-..|..++++|.-.
T Consensus 370 ~~~~~~i~~~~~~w~~~~~~~~~~~ 394 (503)
T PF10508_consen 370 DRQDNDILSITESWYESLSGSPLSN 394 (503)
T ss_pred CCchHHHHHHHHHHHHHhcCCchHH
Confidence 4577888888888899999888664
No 8
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.65 E-value=12 Score=37.43 Aligned_cols=146 Identities=20% Similarity=0.140 Sum_probs=102.1
Q ss_pred CcchHHHHHHHHHhcccccCchhhHhhhhhchHHHHHHHHHHhhccCCCCCCChhhhhhHHHHHHhhhhhhcccCchhhh
Q 037700 37 SHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTETASTRVSNALALFQVTFTSIGSSFAI 116 (309)
Q Consensus 37 ~~~~Re~AL~eLsk~re~~~dLap~LW~S~Gtia~LLQEIisvYp~Ls~p~Lt~~~SnRVcnaLaLlQ~~~~~~~~~~~~ 116 (309)
+++.||.|+-+|-..-|++. .|..|=..-|...++. ++.. .++.-|...|=.+--
T Consensus 96 ~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~--------~l~~----~~~~lR~~Aa~Vigt------------ 150 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLG--------YLEN----SDAELRELAARVIGT------------ 150 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHH--------HhcC----CcHHHHHHHHHHHHH------------
Confidence 34788999999988888764 4555544444444443 2332 223445554444444
Q ss_pred hhhcccccccccccchhhHHHHHHHHHhcCccccccccccccCCCCCcchhhhhhhhhhhhccCChhHHHHHHhhccccc
Q 037700 117 LKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFP 196 (309)
Q Consensus 117 ~~~~~cvAshp~~~~~eTR~~~~~Fl~A~iplYLyPfLntt~k~rp~EyLRLtSLGVIgaLvK~dd~evI~fLL~tEiiP 196 (309)
|+-.+| .... .++..+ +|-..+..-++ ....+.|--.|+-|++|+++.-+-.-.|+.-.. .-
T Consensus 151 -----~~qNNP-----~~Qe---~v~E~~---~L~~Ll~~ls~-~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G-~~ 212 (342)
T KOG2160|consen 151 -----AVQNNP-----KSQE---QVIELG---ALSKLLKILSS-DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNG-YQ 212 (342)
T ss_pred -----HHhcCH-----HHHH---HHHHcc---cHHHHHHHHcc-CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCC-HH
Confidence 777888 7777 788887 66666666563 345678899999999999998888888887766 33
Q ss_pred cccccccc--cchhhHHHHHHHHHHHhcccc
Q 037700 197 CCLTSMEV--GSDLSKQVATFIIYKILLHEE 225 (309)
Q Consensus 197 lCLriME~--GSelSKtvAtfIlqKIL~~d~ 225 (309)
..-+.|+. -+-..|.+|.|.+++++..+.
T Consensus 213 ~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~ 243 (342)
T KOG2160|consen 213 VLRDVLQSNNTSVKLKRKALFLLSLLLQEDK 243 (342)
T ss_pred HHHHHHHcCCcchHHHHHHHHHHHHHHHhhh
Confidence 34567888 567799999999999998763
No 9
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=68.57 E-value=31 Score=37.49 Aligned_cols=135 Identities=17% Similarity=0.217 Sum_probs=101.8
Q ss_pred cccccccccchhhHHHHHHHHHhcCccccccccccccCCCCCcchhhhhhhhhhhhccCChhHHHHHHhhcccccccccc
Q 037700 122 CMATFRAIKSSMTRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTS 201 (309)
Q Consensus 122 cvAshp~~~~~eTR~~~~~Fl~A~iplYLyPfLntt~k~rp~EyLRLtSLGVIgaLvK~dd~evI~fLL~tEiiPlCLri 201 (309)
-+.-++ |-+. .+...++---|-.++.. +.+-++-.+|+.+..|.- |+++-..+.+..+||-....
T Consensus 316 kLSi~~-----ENK~---~m~~~giV~kL~kLl~s-----~~~~l~~~aLrlL~NLSf--d~~~R~~mV~~GlIPkLv~L 380 (708)
T PF05804_consen 316 KLSIFK-----ENKD---EMAESGIVEKLLKLLPS-----ENEDLVNVALRLLFNLSF--DPELRSQMVSLGLIPKLVEL 380 (708)
T ss_pred HHcCCH-----HHHH---HHHHcCCHHHHHHHhcC-----CCHHHHHHHHHHHHHhCc--CHHHHHHHHHCCCcHHHHHH
Confidence 666666 7777 77778877777777764 245677778877777765 88888999999999998888
Q ss_pred ccccchhhHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCChhhHhhhh
Q 037700 202 MEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLR 281 (309)
Q Consensus 202 ME~GSelSKtvAtfIlqKIL~~d~GL~YiC~t~eRF~aV~~vL~~mv~~l~~~ps~RLLKhIIrCY~RLs~n~rar~aLr 281 (309)
++.+. .+.+|..|++.+=.||++-.-+..| .++..++..+.+.|.+++=...+.--.-||-|+|..+.+.
T Consensus 381 L~d~~--~~~val~iLy~LS~dd~~r~~f~~T--------dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~ 450 (708)
T PF05804_consen 381 LKDPN--FREVALKILYNLSMDDEARSMFAYT--------DCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMC 450 (708)
T ss_pred hCCCc--hHHHHHHHHHHhccCHhhHHHHhhc--------chHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHH
Confidence 87654 5678999999999999887666555 2455566666777888876667777778888888776654
No 10
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=64.55 E-value=6.1 Score=37.24 Aligned_cols=138 Identities=17% Similarity=0.188 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHhcCccccccccccccCCCCCcchhhhhhhhhhhhccCChhHHHHHHhh------ccccccccccccccc
Q 037700 133 MTRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQ------TEIFPCCLTSMEVGS 206 (309)
Q Consensus 133 eTR~~~~~Fl~A~iplYLyPfLntt~k~rp~EyLRLtSLGVIgaLvK~dd~evI~fLL~------tEiiPlCLriME~GS 206 (309)
+.|. .++.++-+.|---|++.-++.-.-+...--.|-.|+-|+..+. +..+.+.. .+.+...++.++.+.
T Consensus 43 ~~~~---~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~-~~~~~~~~~~~~~~~~~~~~fl~ll~~~D 118 (312)
T PF03224_consen 43 EERR---ELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDP-SRVELFLELAKQDDSDPYSPFLKLLDRND 118 (312)
T ss_dssp ----------------------HHHHHH---HHHHHHHHHHHHHHHH-SS-SSHHHHHHHHH-TTH--HHHHHHH-S-SS
T ss_pred HHHH---HHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHhcccccchhHHHHHHHhcCCC
Confidence 5577 7888888888877776655552233333455667777665443 55554444 236788899999999
Q ss_pred hhhHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHHHHHHhh---CCCchhHHHHHHHHHHhcCChhhHhhhhh
Q 037700 207 DLSKQVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVE---QPSPRLLKHIICCYHRLSQSPRACDGLRC 282 (309)
Q Consensus 207 elSKtvAtfIlqKIL~~d~GL~YiC~t~eRF~aV~~vL~~mv~~l~~---~ps~RLLKhIIrCY~RLs~n~rar~aLr~ 282 (309)
...+..|.+++-+++..+..-...= +..++...+..+.+ ..+..+....++|+..|..+++.|..+-+
T Consensus 119 ~~i~~~a~~iLt~Ll~~~~~~~~~~--------~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~ 189 (312)
T PF03224_consen 119 SFIQLKAAFILTSLLSQGPKRSEKL--------VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK 189 (312)
T ss_dssp HHHHHHHHHHHHHHHTSTTT--HHH--------HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCccccch--------HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh
Confidence 9999999999999998766544321 13444444444433 23445668999999999999999998854
No 11
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=63.86 E-value=1.1e+02 Score=37.59 Aligned_cols=89 Identities=17% Similarity=0.087 Sum_probs=61.8
Q ss_pred hHHHHHHhhccccccccccccccchhhHHHHHHHHHHHhcccc-----c--------chhhhhhhhhHH-HHHHHHHHHH
Q 037700 183 PEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEE-----G--------LKYCCVLADRFF-AVARALAQMT 248 (309)
Q Consensus 183 ~evI~fLL~tEiiPlCLriME~GSelSKtvAtfIlqKIL~~d~-----G--------L~YiC~t~eRF~-aV~~vL~~mv 248 (309)
+|.++.+...+.+......|..|+--+|.-|...+.+++..++ + ..+.....+|-. ++...| +
T Consensus 1222 ~e~~~~l~a~~~v~~Lv~vL~~Gs~~aR~~Aa~aL~~L~~~~~~~~~~~a~~ai~pLv~ll~~~~~~~~~~a~~AL---v 1298 (2102)
T PLN03200 1222 PELRRHESAFGAVNQLVAVLRLGSRSARYSAARALQELFSAEHIRDSELARQAVQPLVEMLNTGSESEQHAAIGAL---I 1298 (2102)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhhhhhhhccchHHHHHhcccchhhhHHHHHHH---H
Confidence 3555556666666777788999999999999999999999988 5 554555555532 333333 3
Q ss_pred HHHhhCCCchhHH-----HHHHH-HHHhcCCh
Q 037700 249 EKLVEQPSPRLLK-----HIICC-YHRLSQSP 274 (309)
Q Consensus 249 ~~l~~~ps~RLLK-----hIIrC-Y~RLs~n~ 274 (309)
.-+.+++|++..| .++.+ |.-|++++
T Consensus 1299 kL~kd~is~~a~~~~~~~a~L~~l~~iL~~~~ 1330 (2102)
T PLN03200 1299 KLSSGNPSKALAIADVEGNALENLCKILSSDS 1330 (2102)
T ss_pred HHHcCCCChHhHhhcccchhHHHHHHhccccc
Confidence 3334678999998 66665 66666663
No 12
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=63.85 E-value=78 Score=38.66 Aligned_cols=210 Identities=17% Similarity=0.172 Sum_probs=120.0
Q ss_pred CCCCCChhHHHHHHHHhcCc----chHHHH---HHHHHhcccccCchhhHhhhhhchHHHHHHHHHHhhccCCCCCCChh
Q 037700 19 DLPVHGPASVAYWIQALQSH----ETKERA---LLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPNLTET 91 (309)
Q Consensus 19 ~~~~~~~~~v~q~I~~L~~~----~~Re~A---L~eLsk~re~~~dLap~LW~S~Gtia~LLQEIisvYp~Ls~p~Lt~~ 91 (309)
+-|....+.+..||.+|.+. +.|+.| |.+|+|..+.. --.+=..-|.+..|++=+.+ ++
T Consensus 6 ~~~~~~~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~en---R~~Ia~~aGaIP~LV~lL~s-------g~---- 71 (2102)
T PLN03200 6 DDPDGTLASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEA---RKAIGSHSQAMPLLVSLLRS-------GT---- 71 (2102)
T ss_pred cCccchHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHH---HHHHHHccCcHHHHHHHHcC-------CC----
Confidence 44556688999999999966 777744 55566655432 22333446777777654422 11
Q ss_pred hhhhHHHHHHhhhhhhcccCchhhhhhhcccccccccccchhhHHHHHHHHHhcCccccccccccccCCCCCcchhhhhh
Q 037700 92 ASTRVSNALALFQVTFTSIGSSFAILKVYNCMATFRAIKSSMTRLISVLMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSL 171 (309)
Q Consensus 92 ~SnRVcnaLaLlQ~~~~~~~~~~~~~~~~~cvAshp~~~~~eTR~~~~~Fl~A~iplYLyPfLntt~k~rp~EyLRLtSL 171 (309)
..-|+ |+.+.+- .++.|+ +-|..+.. ...+|. |-=.|+..+ ..-|-.+.
T Consensus 72 ~~vk~-nAaaaL~-----------------nLS~~e-----~nk~~Iv~--~GaIpp-LV~LL~sGs-----~eaKe~AA 120 (2102)
T PLN03200 72 LGAKV-NAAAVLG-----------------VLCKEE-----DLRVKVLL--GGCIPP-LLSLLKSGS-----AEAQKAAA 120 (2102)
T ss_pred HHHHH-HHHHHHH-----------------HHhcCH-----HHHHHHHH--cCChHH-HHHHHHCCC-----HHHHHHHH
Confidence 11122 6666677 778888 87773332 223332 222343332 33788888
Q ss_pred hhhhhhccCC--hhHHHHHHhhccccccccccccccchhhHH---HHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHH
Q 037700 172 GVIGTLVKSD--DPEAIRFLLQTEIFPCCLTSMEVGSDLSKQ---VATFIIYKILLHEEGLKYCCVLADRFFAVARALAQ 246 (309)
Q Consensus 172 GVIgaLvK~d--d~evI~fLL~tEiiPlCLriME~GSelSKt---vAtfIlqKIL~~d~GL~YiC~t~eRF~aV~~vL~~ 246 (309)
+++..|...+ |..=..-......||..++.++.|+.-.|. .|+-.+..+-.+++|..=.... +.+...
T Consensus 121 ~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av~AL~nLs~~~en~~~~IIe-------aGaVp~ 193 (2102)
T PLN03200 121 EAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSATLE-------AGGVDI 193 (2102)
T ss_pred HHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHHHHHHHHhcCccchHHHHHH-------cCCHHH
Confidence 8999988754 322223344677999999999999754443 3555666665555443211111 123333
Q ss_pred HHHHHhhCCCchhHHHHHHHHHHhcCC-hhhHhhhh
Q 037700 247 MTEKLVEQPSPRLLKHIICCYHRLSQS-PRACDGLR 281 (309)
Q Consensus 247 mv~~l~~~ps~RLLKhIIrCY~RLs~n-~rar~aLr 281 (309)
+|.-+ +.+++.+-.+...+-.+++.+ ++.++++.
T Consensus 194 LV~LL-sS~d~~lQ~eAa~aLa~Lass~ee~~~aVI 228 (2102)
T PLN03200 194 LVKLL-SSGNSDAQANAASLLARLMMAFESSISKVL 228 (2102)
T ss_pred HHHHH-cCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 33333 456777777777766555543 55555554
No 13
>PLN00211 predicted protein; Provisional
Probab=29.03 E-value=39 Score=26.26 Aligned_cols=19 Identities=47% Similarity=0.704 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHhhccCCCC
Q 037700 68 TISALLQEIISVYRTLSSP 86 (309)
Q Consensus 68 tia~LLQEIisvYp~Ls~p 86 (309)
-|..+|-||-|||+.|+.+
T Consensus 31 hMtsfLAeIwSVyr~LSqE 49 (61)
T PLN00211 31 HMTSFLAEIWSVYRPLSHE 49 (61)
T ss_pred HHHHHHHHHHHHhchhhhh
Confidence 4789999999999999865
No 14
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=28.73 E-value=1.4e+02 Score=32.66 Aligned_cols=97 Identities=13% Similarity=0.176 Sum_probs=72.6
Q ss_pred CChhHHHHHHhhccccccccccccccchhhHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHHHHHHhhCCCchh
Q 037700 180 SDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRL 259 (309)
Q Consensus 180 ~dd~evI~fLL~tEiiPlCLriME~GSelSKtvAtfIlqKIL~~d~GL~YiC~t~eRF~aV~~vL~~mv~~l~~~ps~RL 259 (309)
.+|+.+-.=..+..+|+...+.++.+++-..+.++-.+.|+=-.++.-.-.-+ ..++.+ +..+...++..+
T Consensus 277 Aed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~--------~giV~k-L~kLl~s~~~~l 347 (708)
T PF05804_consen 277 AEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAE--------SGIVEK-LLKLLPSENEDL 347 (708)
T ss_pred hcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH--------cCCHHH-HHHHhcCCCHHH
Confidence 45667777778899999999999999999999999999998666553222211 112222 122335678899
Q ss_pred HHHHHHHHHHhcCChhhHhhhhh--cCC
Q 037700 260 LKHIICCYHRLSQSPRACDGLRC--CLP 285 (309)
Q Consensus 260 LKhIIrCY~RLs~n~rar~aLr~--~LP 285 (309)
.+..+|.-..||-|+..|..+.+ ++|
T Consensus 348 ~~~aLrlL~NLSfd~~~R~~mV~~GlIP 375 (708)
T PF05804_consen 348 VNVALRLLFNLSFDPELRSQMVSLGLIP 375 (708)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHCCCcH
Confidence 99999999999999999999875 666
No 15
>PF10167 NEP: Uncharacterised conserved protein; InterPro: IPR019320 This entry represents the uncharacterised protein family UPF0402. It contains a characteristic NEP sequence motif. Their function is not known.
Probab=26.24 E-value=1e+02 Score=26.56 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=28.1
Q ss_pred hhhhHHHHHHHHHHHHHHHhhCCCch---hHHHHHHHH
Q 037700 233 LADRFFAVARALAQMTEKLVEQPSPR---LLKHIICCY 267 (309)
Q Consensus 233 t~eRF~aV~~vL~~mv~~l~~~ps~R---LLKhIIrCY 267 (309)
+.+||..++.-++.|++.++++||-. |=.||.+.-
T Consensus 6 ~~~~~~~~~~~~se~i~~~ANEPSlgLYrlQeHvrksl 43 (118)
T PF10167_consen 6 LEDKVKKVTERISENIHIVANEPSLGLYRLQEHVRKSL 43 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHh
Confidence 56899999999999999999999954 445665543
No 16
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=25.63 E-value=2e+02 Score=26.51 Aligned_cols=13 Identities=23% Similarity=0.184 Sum_probs=7.2
Q ss_pred HHHHHHHHHHhcc
Q 037700 211 QVATFIIYKILLH 223 (309)
Q Consensus 211 tvAtfIlqKIL~~ 223 (309)
..|.+++||++..
T Consensus 91 ~~g~~vlqkll~~ 103 (322)
T cd07920 91 MYGCRVIQKLLES 103 (322)
T ss_pred chhHHHHHHHHHh
Confidence 3455666665554
No 17
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=25.37 E-value=2.6e+02 Score=25.43 Aligned_cols=106 Identities=23% Similarity=0.297 Sum_probs=69.7
Q ss_pred hhhhhhhhhhhhccC-ChhHHHHHHhhccccccc-----------ccc-ccccchhhHHHHHHHHHHHhccc-ccchhhh
Q 037700 166 LRLTSLGVIGTLVKS-DDPEAIRFLLQTEIFPCC-----------LTS-MEVGSDLSKQVATFIIYKILLHE-EGLKYCC 231 (309)
Q Consensus 166 LRLtSLGVIgaLvK~-dd~evI~fLL~tEiiPlC-----------Lri-ME~GSelSKtvAtfIlqKIL~~d-~GL~YiC 231 (309)
+|.+.|.-+++++|. |-.....|. ..++|-- +.+ .--.+.-.+..|.-.+.-+|..- .=|.+.+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW--~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae 79 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYW--PALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAE 79 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhH--HHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHH
Confidence 699999999999998 665554442 3344432 222 22345556777777777777553 2344444
Q ss_pred hhhh---hHHHHHHHHHHHHHHH--------hhCCCchhHHHHHHHHHHhcCC
Q 037700 232 VLAD---RFFAVARALAQMTEKL--------VEQPSPRLLKHIICCYHRLSQS 273 (309)
Q Consensus 232 ~t~e---RF~aV~~vL~~mv~~l--------~~~ps~RLLKhIIrCY~RLs~n 273 (309)
..-. -|...+..|+.|+.++ ..+.++..+-++++|-.-|.++
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~ 132 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQA 132 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHcc
Confidence 3331 2888888999998763 4677899999999996655554
No 18
>cd06224 REM Guanine nucleotide exchange factor for Ras-like GTPases; N-terminal domain (RasGef_N), also called REM domain (Ras exchanger motif). This domain is common in nucleotide exchange factors for Ras-like small GTPases and is typically found immediately N-terminal to the RasGef (Cdc25-like) domain. REM contacts the GTPase and is assumed to participate in the catalytic activity of the exchange factor. Proteins with the REM domain include Sos1 and Sos2, which relay signals from tyrosine-kinase mediated signalling to Ras, RasGRP1-4, RasGRF1,2, CNrasGEF, and RAP-specific nucleotide exchange factors, to name a few.
Probab=22.92 E-value=3.7e+02 Score=21.05 Aligned_cols=50 Identities=22% Similarity=0.182 Sum_probs=33.6
Q ss_pred HHHHHHhcCcchHHHHHHHHHhcccccCchhhHhhhhhchHHHHHHHHHHhhccCCCCC
Q 037700 29 AYWIQALQSHETKERALLILSQNKEIRKDLAPLLWNSIGTISALLQEIISVYRTLSSPN 87 (309)
Q Consensus 29 ~q~I~~L~~~~~Re~AL~eLsk~re~~~dLap~LW~S~Gtia~LLQEIisvYp~Ls~p~ 87 (309)
.++|.-|+++.. ..-+.+-+-=.+-..+|.+...||..+++.|....++.
T Consensus 3 ~~Li~~L~~~~~---------~~d~~f~~~FllTyrsF~s~~~ll~~L~~rf~~~~~~~ 52 (122)
T cd06224 3 EALIEHLTSTFD---------MPDPSFVSTFLLTYRSFTTPTELLEKLIERYEIAPPEN 52 (122)
T ss_pred HHHHHHHcCCCc---------cccHHHHHHHHHHhhhhCCHHHHHHHHHHHhCCCCCCc
Confidence 456666666544 11122333335678899999999999999999877654
No 19
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=22.83 E-value=67 Score=32.71 Aligned_cols=41 Identities=37% Similarity=0.601 Sum_probs=29.7
Q ss_pred hhhHhhhhhchHHH---HHHHHHHhhccCCCCCCChhhhhhHHHHHHhhh
Q 037700 58 LAPLLWNSIGTISA---LLQEIISVYRTLSSPNLTETASTRVSNALALFQ 104 (309)
Q Consensus 58 Lap~LW~S~Gtia~---LLQEIisvYp~Ls~p~Lt~~~SnRVcnaLaLlQ 104 (309)
|+|.+|++.|-+.+ ||+-++...|..- .+.+++-.+|+.||
T Consensus 165 l~p~lWe~~gniPalvrLL~a~i~k~~~~i------~~~~~l~~iLgvFQ 208 (435)
T PF03378_consen 165 LSPALWERRGNIPALVRLLQAYIKKDPSFI------VANNQLEPILGVFQ 208 (435)
T ss_dssp TSGGGGGSTTTHHHHHHHHHHHHHHHGGG----------S-CHHHHHHHH
T ss_pred cCcchhccCCCcCcHHHHHHHHHHhCchhh------cchhhHHHHHHHHH
Confidence 46899999998877 5688888887633 23467778999999
No 20
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=22.48 E-value=3.3e+02 Score=26.75 Aligned_cols=119 Identities=18% Similarity=0.296 Sum_probs=72.2
Q ss_pred HHHHhcCccccccccccccCCCC-CcchhhhhhhhhhhhccCChhHHHHHHhhcc---ccccccccccccchhhHHHHHH
Q 037700 140 LMVLAKLPLYLYPFLNTKDKEKP-HEYLRLTSLGVIGTLVKSDDPEAIRFLLQTE---IFPCCLTSMEVGSDLSKQVATF 215 (309)
Q Consensus 140 ~Fl~A~iplYLyPfLntt~k~rp-~EyLRLtSLGVIgaLvK~dd~evI~fLL~tE---iiPlCLriME~GSelSKtvAtf 215 (309)
.|++.++- ...++..| -..|-..+|-..|.++- ++++++.|-... ++-.|++.++.++ .+|++++.
T Consensus 42 ~~i~rDi~-------~~~~~~~p~~~~L~~qALkll~~~l~--~~~i~~~l~~d~~~~~i~~~i~~l~~~~-~~K~i~~~ 111 (372)
T PF12231_consen 42 QFIQRDIS-------SSSSKGDPFDSRLVIQALKLLGFFLY--HPEIVSTLSDDFASFIIDHSIESLQNPN-SPKSICTH 111 (372)
T ss_pred HHHHHHHh-------cccCCCCCcchHHHHHHHHHHHHHHc--cHHHHhhCChHHHHHHHHHHHHHHcCCC-CCHHHHHH
Confidence 66666665 44555566 66777788889998885 555655555432 5566666666555 58988888
Q ss_pred HHHHHhcccccchhhhhhhhhHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCC
Q 037700 216 IIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQS 273 (309)
Q Consensus 216 IlqKIL~~d~GL~YiC~t~eRF~aV~~vL~~mv~~l~~~ps~RLLKhIIrCY~RLs~n 273 (309)
-+.=+=...=+-++. +.+|-..+..++.+|-+. -+|.-+.-..+.||.||-.+
T Consensus 112 ~l~~ls~Q~f~~~~~--~~~~~~~l~~~l~~i~~~---~~s~si~~erL~i~~~ll~q 164 (372)
T PF12231_consen 112 YLWCLSDQKFSPKIM--TSDRVERLLAALHNIKNR---FPSKSIISERLNIYKRLLSQ 164 (372)
T ss_pred HHHHHHcCCCCCccc--chhhHHHHHHHHHHhhcc---CCchhHHHHHHHHHHHHHHH
Confidence 776544444444433 444544444444444322 46666777777777776554
No 21
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=22.42 E-value=1.5e+02 Score=28.27 Aligned_cols=105 Identities=18% Similarity=0.129 Sum_probs=69.8
Q ss_pred hhhhhhhhccCChhHHH-----HHHhh-ccccccccccccccc-----hhhHHHHHHHHHHHhc-ccccchhhhhhhh--
Q 037700 170 SLGVIGTLVKSDDPEAI-----RFLLQ-TEIFPCCLTSMEVGS-----DLSKQVATFIIYKILL-HEEGLKYCCVLAD-- 235 (309)
Q Consensus 170 SLGVIgaLvK~dd~evI-----~fLL~-tEiiPlCLriME~GS-----elSKtvAtfIlqKIL~-~d~GL~YiC~t~e-- 235 (309)
++.+..-|++..|.++| ++++. ...+|-|+..+|.++ +..+.+|.-|-+--=. ...+|.-+=..+.
T Consensus 82 tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~ya~~ 161 (262)
T PF14225_consen 82 TLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILSSYAKG 161 (262)
T ss_pred HHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhc
Confidence 45555555554444433 34433 568899999999999 7788888887766521 2234444444433
Q ss_pred hHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcCCh
Q 037700 236 RFFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQSP 274 (309)
Q Consensus 236 RF~aV~~vL~~mv~~l~~~ps~RLLKhIIrCY~RLs~n~ 274 (309)
||.....-+++++..+.+..-|..--+++-.+..|-+|.
T Consensus 162 ~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~ 200 (262)
T PF14225_consen 162 RFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENG 200 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC
Confidence 366677778888888888777777777777788877775
No 22
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=21.95 E-value=2.9e+02 Score=27.41 Aligned_cols=95 Identities=16% Similarity=0.173 Sum_probs=53.9
Q ss_pred hhhhhhhhhhccCChhHHHHHHhhccccccccccccccchhhHHHHHHHHHHHhcccc--cchhhhhhhhhHHHHHHHHH
Q 037700 168 LTSLGVIGTLVKSDDPEAIRFLLQTEIFPCCLTSMEVGSDLSKQVATFIIYKILLHEE--GLKYCCVLADRFFAVARALA 245 (309)
Q Consensus 168 LtSLGVIgaLvK~dd~evI~fLL~tEiiPlCLriME~GSelSKtvAtfIlqKIL~~d~--GL~YiC~t~eRF~aV~~vL~ 245 (309)
++.-+++-..+| .+.+.+++|.++.+=-..+.++.++==-=+=|--.+.-+|.... .=+|.-.++|||+...+-|=
T Consensus 141 l~~g~mlRec~k--~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll 218 (335)
T PF08569_consen 141 LNCGDMLRECIK--HESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLL 218 (335)
T ss_dssp HHHHHHHHHHTT--SHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHC
T ss_pred chHHHHHHHHHh--hHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 334344444444 67788999999988877777776653222222222333443333 34788999999998655552
Q ss_pred HHHHHHhhCCCchhHHHHH
Q 037700 246 QMTEKLVEQPSPRLLKHII 264 (309)
Q Consensus 246 ~mv~~l~~~ps~RLLKhII 264 (309)
.--.+.++..|-+||-.++
T Consensus 219 ~s~NYvtkrqslkLL~ell 237 (335)
T PF08569_consen 219 ESSNYVTKRQSLKLLGELL 237 (335)
T ss_dssp T-SSHHHHHHHHHHHHHHH
T ss_pred cCCCeEeehhhHHHHHHHH
Confidence 2223344444555554443
No 23
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=20.56 E-value=3.2e+02 Score=28.19 Aligned_cols=132 Identities=10% Similarity=0.087 Sum_probs=86.4
Q ss_pred HHHHhcCccccccccccccCCCCCcchhhhhhhhhhhhccCChhHHHHHHhhc-----cccccccccccccchhhHHHHH
Q 037700 140 LMVLAKLPLYLYPFLNTKDKEKPHEYLRLTSLGVIGTLVKSDDPEAIRFLLQT-----EIFPCCLTSMEVGSDLSKQVAT 214 (309)
Q Consensus 140 ~Fl~A~iplYLyPfLntt~k~rp~EyLRLtSLGVIgaLvK~dd~evI~fLL~t-----EiiPlCLriME~GSelSKtvAt 214 (309)
..+...-|.|...|+|..++...-+.++ -.|-.|.-|+.. ++.-++++... +..-..++.+..+.....-.|.
T Consensus 45 ~~~~~~~~~y~~~~l~ll~~~~~~d~vq-yvL~Li~dll~~-~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~ 122 (429)
T cd00256 45 EILDVLSGQYVKTFVNLLSQIDKDDTVR-YVLTLIDDMLQE-DDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSF 122 (429)
T ss_pred HHhcccHHHHHHHHHHHHhccCcHHHHH-HHHHHHHHHHHh-chHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHH
Confidence 6667777999999988777766655444 457777777776 45555555543 4444445566778888888999
Q ss_pred HHHHHHhcccccchhhhhhhhhHHHHHHHH-HHHHHHHhhCCCchhHHHHHHHHHHhcCChhhHhhhh
Q 037700 215 FIIYKILLHEEGLKYCCVLADRFFAVARAL-AQMTEKLVEQPSPRLLKHIICCYHRLSQSPRACDGLR 281 (309)
Q Consensus 215 fIlqKIL~~d~GL~YiC~t~eRF~aV~~vL-~~mv~~l~~~ps~RLLKhIIrCY~RLs~n~rar~aLr 281 (309)
+|+.+++...... .+......+ +....++...-+.+...-.++|+..|-..++.|...-
T Consensus 123 ~iLt~l~~~~~~~--------~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~ 182 (429)
T cd00256 123 SILAKLACFGLAK--------MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV 182 (429)
T ss_pred HHHHHHHhcCccc--------cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence 9999988643321 111122222 2223333333357888888999999999999997764
No 24
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=20.46 E-value=2.1e+02 Score=24.96 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=36.7
Q ss_pred ccchhhHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHHHHHHhhCCCchhHHHHHHHHHHhcC
Q 037700 204 VGSDLSKQVATFIIYKILLHEEGLKYCCVLADRFFAVARALAQMTEKLVEQPSPRLLKHIICCYHRLSQ 272 (309)
Q Consensus 204 ~GSelSKtvAtfIlqKIL~~d~GL~YiC~t~eRF~aV~~vL~~mv~~l~~~ps~RLLKhIIrCY~RLs~ 272 (309)
.+.|.-=+||.--+-+||.|.. ......+|.+++-.+...+. -++.--|..|+..+++...
T Consensus 78 ~~ee~y~~vvi~~L~~iL~D~s-------Ls~~h~~vv~ai~~If~~l~-~~cv~~L~~viP~~l~~i~ 138 (160)
T PF11865_consen 78 SSEEYYPTVVINALMRILRDPS-------LSSHHTAVVQAIMYIFKSLG-LKCVPYLPQVIPIFLRVIR 138 (160)
T ss_pred chHHHHHHHHHHHHHHHHHhhh-------hHHHHHHHHHHHHHHHHhcC-cCchhHHHHHhHHHHHHHH
Confidence 3446666777777777777653 12233356666666665533 3347777888888876554
No 25
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=20.18 E-value=2.3e+02 Score=26.67 Aligned_cols=77 Identities=19% Similarity=0.059 Sum_probs=54.3
Q ss_pred ccccccccccccchhhHHHHHHHHHHHhcccccch-hhhhhhhhHHHHHHHHHHHHHHHh----hCCCchhHHHHHHHHH
Q 037700 194 IFPCCLTSMEVGSDLSKQVATFIIYKILLHEEGLK-YCCVLADRFFAVARALAQMTEKLV----EQPSPRLLKHIICCYH 268 (309)
Q Consensus 194 iiPlCLriME~GSelSKtvAtfIlqKIL~~d~GL~-YiC~t~eRF~aV~~vL~~mv~~l~----~~ps~RLLKhIIrCY~ 268 (309)
++|..|..++-.+.-.|.-+--+++.++..-..-. -.=+...++.-+-.+|.++...+= ++.|..|+..+.-|..
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 78999999999999999999999999987432222 122223334444444555444331 4678999999999999
Q ss_pred Hh
Q 037700 269 RL 270 (309)
Q Consensus 269 RL 270 (309)
+|
T Consensus 200 ~L 201 (282)
T PF10521_consen 200 SL 201 (282)
T ss_pred HH
Confidence 98
Done!