BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037701
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 8/118 (6%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
RD GWT LH AA+ GH I ++LK+ D + +D G+T LHLAA +G+ +V
Sbjct: 43 RDFTGWTPLHLAAHFGHLEIVEVLLKNGAD----VNAKDSLGVTPLHLAARRGHLEIVEV 98
Query: 247 IIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV 304
++++ + + D+ G+ H A +++ LL+N + ++ +DK G T +
Sbjct: 99 LLKNGAD-VNASDSHGFTPLHLAAKRGHLEIVEVLLKNG---ADVNAQDKFGKTAFDI 152
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 67/169 (39%), Gaps = 56/169 (33%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
G TPLH+AA H +VEVL+K + + GV T LH A A
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGV---------------TPLHLA---A 88
Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGW 192
+G +E+V +L+N G D NA D HG+
Sbjct: 89 RRGHLEIVEVLLKN-------GAD----------VNAS-----------------DSHGF 114
Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
T LH AA GH I ++LK+ D + +D G TA ++ G E
Sbjct: 115 TPLHLAAKRGHLEIVEVLLKNGAD----VNAQDKFGKTAFDISIDNGNE 159
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 24/122 (19%)
Query: 57 GILEMCPSLL---LQVNDK---GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWI 110
G LE+ LL VN K G TPLH+AA+ H +VEVL+K +G D
Sbjct: 58 GHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLK----------NGAD-- 105
Query: 111 RWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAE 170
+ + T LH A A +G +E+V +L+N + + G T ++ E
Sbjct: 106 ---VNASDSHGFTPLHLA---AKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE 159
Query: 171 DV 172
D+
Sbjct: 160 DL 161
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 68/130 (52%), Gaps = 17/130 (13%)
Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
G T LH AA GH + ++L++ D + +D G T LHLAA G+ VV+ ++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAARNGHLEVVKLLL-- 55
Query: 251 CPESYSIVDNRGWNARHFAMVSLRGG---VLKSLLENPYVISLIHGRDKNGNTPLHVLAA 307
E+ + V+ + N R ++ R G V+K LLE + ++ +DKNG TPLH+
Sbjct: 56 --EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHL--- 107
Query: 308 ACRDSSYFIV 317
A R+ +V
Sbjct: 108 AARNGHLEVV 117
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 78/178 (43%), Gaps = 60/178 (33%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN--TALHEAVQ 130
G TPLH+AA+ H VV++L LE+G D V ++KN T LH A +
Sbjct: 2 GRTPLHLAARNGHLEVVKLL----------LEAGAD-------VNAKDKNGRTPLHLAAR 44
Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRH 190
+ G +E+V +LE A NA +D++
Sbjct: 45 N---GHLEVVKLLLE-----------------AGADVNA-----------------KDKN 67
Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
G T LH AA GH + ++L++ D + +D G T LHLAA G+ VV+ ++
Sbjct: 68 GRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 11/100 (11%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
+D++G T LH AA GH + ++L++ D + +D G T LHLAA G+ VV+
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 247 IIRHCPESYSIVDNRGWNARHFAMVSLRGG---VLKSLLE 283
++ E+ + V+ + N R ++ R G V+K LLE
Sbjct: 87 LL----EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D GWT LH AAY GH I ++LK+ D + +D G+T LHLAA +G+ VV +
Sbjct: 44 DHVGWTPLHLAAYFGHLEIVEVLLKNGAD----VNADDSLGVTPLHLAADRGHLEVVEVL 99
Query: 248 IRHCPESYSIVDNRGWNARHFA 269
+++ + + D+ G+ H A
Sbjct: 100 LKNGAD-VNANDHNGFTPLHLA 120
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 64/167 (38%), Gaps = 56/167 (33%)
Query: 75 TPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAK 134
TPLH+AA H +VEVL+K + + GV T LH A A +
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV---------------TPLHLA---ADR 90
Query: 135 GSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGWTS 194
G +E+V +L+N G D D +G+T
Sbjct: 91 GHLEVVEVLLKN-------GAD---------------------------VNANDHNGFTP 116
Query: 195 LHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
LH AA +GH I ++LK D + +D G TA ++ G E
Sbjct: 117 LHLAANIGHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDNGNE 159
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 48 ERVSTEFVEGILEMCPSLLLQVND-KGDTPLHVAAKCRHPAVVEVLIK 94
+R E VE +L+ + ND G TPLH+AA H +VEVL+K
Sbjct: 89 DRGHLEVVEVLLKNGADV--NANDHNGFTPLHLAANIGHLEIVEVLLK 134
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIK 94
G TPLH+AA H VVEVL+K
Sbjct: 80 GVTPLHLAADRGHLEVVEVLLK 101
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 74/180 (41%), Gaps = 29/180 (16%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
G TPLH+AAK V L+++ + E GV T LH A Q
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV---------------TPLHLAAQ-- 254
Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVI---CNAEDVXXXXXXXXXXXTRERDR 189
+G EMVA +L + + GLT LH DV TR
Sbjct: 255 -EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM--- 310
Query: 190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIR 249
G+T LH A++ G+ + +L+ + D + + G + LH AA QG+ +V +++
Sbjct: 311 -GYTPLHVASHYGNIKLVKFLLQHQAD----VNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 74/280 (26%), Positives = 122/280 (43%), Gaps = 40/280 (14%)
Query: 27 SIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHP 86
++AT +T LH+ + +EG E V +LE S + KG TPLHVAAK
Sbjct: 107 NLATTAGHTPLHI---AAREGH---VETVLALLEKEASQAC-MTKKGFTPLHVAAKYGKV 159
Query: 87 AVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILEN 146
V E+L++ + ++G+ T LH AV ++++V +L
Sbjct: 160 RVAELLLERDAHPNAAGKNGL---------------TPLHVAVH---HNNLDIVKLLLPR 201
Query: 147 CPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGWTSLHHAAYLGHSNI 206
S +G T LH A N +V E + G T LH AA GH+ +
Sbjct: 202 GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQ-GVTPLHLAAQEGHAEM 260
Query: 207 TSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVD---NRGW 263
+++L + + + + G+T LHL A +G+ V +I+H +VD G+
Sbjct: 261 VALLLSKQANGNLG----NKSGLTPLHLVAQEGHVPVADVLIKHG----VMVDATTRMGY 312
Query: 264 NARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLH 303
H A ++K LL++ + ++ + K G +PLH
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQ---ADVNAKTKLGYSPLH 349
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 79/299 (26%), Positives = 117/299 (39%), Gaps = 47/299 (15%)
Query: 70 NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELES-----------GVDWIRWMLLVEN 118
N K +TPLH+AA+ H V + L++ K + + + G + +LL N
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 103
Query: 119 EEKN---TALHEAVQSAAK-GSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXX 174
N TA H + AA+ G VE V +LE S G T LH A V
Sbjct: 104 ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE 163
Query: 175 XXXXXXXXXTRERDRH-------GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDR 227
ERD H G T LH A + + +I ++L +
Sbjct: 164 LLL--------ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP----HSPAWN 211
Query: 228 GMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYV 287
G T LH+AA Q V R ++++ S + +G H A ++ LL
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYG-GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 288 ISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEAVNKQNTSVEHIVRYGYPELEV 346
+L +K+G TPLH++A VP +D+ + K V+ R GY L V
Sbjct: 271 GNL---GNKSGLTPLHLVAQEGH------VPVADV---LIKHGVMVDATTRMGYTPLHV 317
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 88/232 (37%), Gaps = 27/232 (11%)
Query: 75 TPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAK 134
TPLHVA+ H +V+ L++ + V N + T LH A ++
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPN---------------VSNVKVETPLHMAARA--- 57
Query: 135 GSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGWTS 194
G E+ +L+N + + D T LH A ++ G T
Sbjct: 58 GHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA-GHTP 116
Query: 195 LHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPES 254
LH AA GH +L+ E + K G T LH+AA G RV ++
Sbjct: 117 LHIAAREGHVETVLALLEKEASQACMTKK----GFTPLHVAAKYGKVRVAELLLERDAHP 172
Query: 255 YSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLA 306
+ N G H A+ ++K LL P S H NG TPLH+ A
Sbjct: 173 NAAGKN-GLTPLHVAVHHNNLDIVKLLL--PRGGS-PHSPAWNGYTPLHIAA 220
Score = 31.2 bits (69), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 51/127 (40%), Gaps = 21/127 (16%)
Query: 56 EGILEMCPSLLLQV------NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESG--- 106
EG EM LL + N G TPLH+ A+ H V +VLIK G
Sbjct: 255 EGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP 314
Query: 107 ---------VDWIRWMLLVE---NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRG 154
+ ++++L + N + Q+A +G ++V +L+N S +
Sbjct: 315 LHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS 374
Query: 155 PDGLTTL 161
DG T L
Sbjct: 375 SDGTTPL 381
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 31/223 (13%)
Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRH 190
+ + G E V +LE ++ DGLT LH A I + D+ + D
Sbjct: 47 ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP-DNE 105
Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHL---------------- 234
GW LH AA G+ +I ++ S+ + A+ E D +
Sbjct: 106 GWIPLHAAASCGYLDIAEYLI-SQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV 164
Query: 235 ---AASQGYERVVRRIIRHCPESYSIVDNR----GWNARHFAMVSLRGGVLKSLLENPYV 287
AA + ER++ R R S I D R G A H A VLK L++ Y
Sbjct: 165 DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD 224
Query: 288 ISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDS--DMYEAVNK 328
+++ +D +G TPLH A ++ + I+ ++ DM EAVNK
Sbjct: 225 VNI---KDYDGWTPLHAAAHWGKEEACRILVENLCDM-EAVNK 263
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 5/120 (4%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
+++A G+ + V +++EN + DG T LH A ++V +D
Sbjct: 9 IEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKD 67
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
G T LHHAA GH + +++ K + +D G T LH AA G++ VV+ +I
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLIS----KGADVNAKDSDGRTPLHHAAENGHKEVVKLLI 123
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 8/123 (6%)
Query: 123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXX 182
T LH A ++ K E+V ++ + + DG T LH A ++V
Sbjct: 39 TPLHHAAENGHK---EVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD 95
Query: 183 XTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYER 242
+D G T LHHAA GH + +++ K + D G T L LA G E
Sbjct: 96 -VNAKDSDGRTPLHHAAENGHKEVVKLLIS----KGADVNTSDSDGRTPLDLAREHGNEE 150
Query: 243 VVR 245
VV+
Sbjct: 151 VVK 153
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 41/116 (35%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D G T LHHAA GH + +++ K + +D G T LH AA G++ VV+ +
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLIS----KGADVNAKDSDGRTPLHHAAENGHKEVVKLL 89
Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLH 303
I + ++ +D +G TPLH
Sbjct: 90 ISKGAD-------------------------------------VNAKDSDGRTPLH 108
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D G+T LH AAY GH I ++LK+ D + D GMT LHLAA GY +V +
Sbjct: 77 DVFGYTPLHLAAYWGHLEIVEVLLKNGAD----VNAMDSDGMTPLHLAAKWGYLEIVEVL 132
Query: 248 IRHCPE 253
++H +
Sbjct: 133 LKHGAD 138
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 70 NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
++ G TPLH+AA H +VEVL+K G T LH A
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGY---------------TPLHLA- 87
Query: 130 QSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAA 164
A G +E+V +L+N + DG+T LH A
Sbjct: 88 --AYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLA 120
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 69 VNDKGDTPLHVAAKCRHPAVVEVLIK 94
++ G TPLH+AAK + +VEVL+K
Sbjct: 109 MDSDGMTPLHLAAKWGYLEIVEVLLK 134
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 47/119 (39%), Gaps = 8/119 (6%)
Query: 123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXX 182
T LH A S G +E+V +L++ D G T LH A ++
Sbjct: 49 TPLHLAAYS---GHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD 105
Query: 183 XTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
D G T LH AA G+ I ++LK D + +D G TA ++ G E
Sbjct: 106 -VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDNGNE 159
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
+++A G+ + V ++LEN + DG T LH A ++V +D
Sbjct: 9 IEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEV-VKLLLSQGADPNAKD 67
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
G T LH AA GH + ++L D +D G T LHLAA G++ VV+ ++
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNA----KDSDGKTPLHLAAENGHKEVVKLLL 123
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D G T LH AA GH + ++L D +D G T LHLAA G++ VV+ +
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNA----KDSDGKTPLHLAAENGHKEVVKLL 89
Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLE---NPYVISLIHGRDKNGNTPLHV 304
+ + + D+ G H A + V+K LL +P D +G TPL +
Sbjct: 90 LSQGADPNA-KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNT------SDSDGRTPLDL 142
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 13/148 (8%)
Query: 103 LESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLH 162
LE+G D + + + T LH A ++ K E+V +L + + DG T LH
Sbjct: 24 LENGAD-----VNASDSDGKTPLHLAAENGHK---EVVKLLLSQGADPNAKDSDGKTPLH 75
Query: 163 AAVICNAEDVXXXXXXXXXXXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALY 222
A ++V +D G T LH AA GH + ++L D +
Sbjct: 76 LAAENGHKEVVKLLLSQGADPNA-KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTS-- 132
Query: 223 KEDDRGMTALHLAASQGYERVVRRIIRH 250
D G T L LA G E VV+ + +
Sbjct: 133 --DSDGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 225 DDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
D G T LHLAA G++ VV+ ++ + + D+ G H A + V+K LL
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNA-KDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 285 PYVISLIHGRDKNGNTPLHVLA 306
+ + +D +G TPLH+ A
Sbjct: 93 G---ADPNAKDSDGKTPLHLAA 111
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 7/126 (5%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLH-AAVICNAEDVXXXXXXXXXXXTRER 187
+++A G + V ++ N + G T LH AA I + E V R+
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDT 78
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D GWT LH AA GH I ++LK D + +D G+T LHLAA +G+ +V +
Sbjct: 79 D--GWTPLHLAADNGHLEIVEVLLKYGAD----VNAQDAYGLTPLHLAADRGHLEIVEVL 132
Query: 248 IRHCPE 253
++H +
Sbjct: 133 LKHGAD 138
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 20/96 (20%)
Query: 70 NDKGDTPLHVAAKCRHPAVVEVLIKF-AKKQSRELESGVDWIRWMLLVENEEKNTALHEA 128
+D+G TPLH+AA HP +VEVL+K A +R+ + W T LH A
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG---W-------------TPLHLA 87
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAA 164
A G +E+V +L+ + + GLT LH A
Sbjct: 88 ---ADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLA 120
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 8/124 (6%)
Query: 118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXX 177
+++ +T LH A A G E+V +L++ + R DG T LH A N
Sbjct: 44 DDQGSTPLHLA---AWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAA-DNGHLEIVEVL 99
Query: 178 XXXXXXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS 237
+D +G T LH AA GH I ++LK D + +D G TA ++
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD----VNAQDKFGKTAFDISID 155
Query: 238 QGYE 241
G E
Sbjct: 156 NGNE 159
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
+++A G+ + V +++EN + DG T LH A +++ +D
Sbjct: 9 IEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGAD-VNAKD 67
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
G T LH+AA GH I +++ D + +D G T LH AA +G++ +V+ +I
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKGAD----VNAKDSDGRTPLHYAAKEGHKEIVKLLI 123
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 51/123 (41%), Gaps = 8/123 (6%)
Query: 123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXX 182
T LH A A +G E+V ++ + + DG T LH A +++
Sbjct: 39 TPLHYA---AKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD 95
Query: 183 XTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYER 242
+D G T LH+AA GH I +++ D + D G T L LA G E
Sbjct: 96 -VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD----VNTSDSDGRTPLDLAREHGNEE 150
Query: 243 VVR 245
+V+
Sbjct: 151 IVK 153
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 41/119 (34%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D G T LH+AA GH I +++ D + +D G T LH AA +G++ +V+ +
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGAD----VNAKDSDGRTPLHYAAKEGHKEIVKLL 89
Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLA 306
I + ++ +D +G TPLH A
Sbjct: 90 ISKGAD-------------------------------------VNAKDSDGRTPLHYAA 111
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
+++A G+ + V ++LEN + DG T LH A +++ +D
Sbjct: 9 IEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPN-AKD 67
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
G T LH+AA GH I ++L D +D G T LH AA G++ +V+ ++
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNA----KDSDGRTPLHYAAENGHKEIVKLLL 123
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 51/123 (41%), Gaps = 8/123 (6%)
Query: 123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXX 182
T LH A ++ G E+V +L + + DG T LH A +++
Sbjct: 39 TPLHYAAEN---GHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD 95
Query: 183 XTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYER 242
+D G T LH+AA GH I ++L D + D G T L LA G E
Sbjct: 96 PN-AKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTS----DSDGRTPLDLAREHGNEE 150
Query: 243 VVR 245
+V+
Sbjct: 151 IVK 153
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 42/119 (35%), Gaps = 41/119 (34%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D G T LH+AA GH I ++L D +D G T LH AA G++ +V+ +
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNA----KDSDGRTPLHYAAENGHKEIVKLL 89
Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLA 306
+ + + +D +G TPLH A
Sbjct: 90 LSKGADPNA-------------------------------------KDSDGRTPLHYAA 111
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
+D+ G+T LH AA GH I ++LK+ D + +D G T LHLAA +G+ +V
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 247 IIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPL 302
+++ + D G+ H A +++ LL+ + ++ +DK G TP
Sbjct: 87 LLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK---AGADVNAQDKFGKTPF 138
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLH-AAVICNAEDVXXXXXXXXXXXTRER 187
+++A G + V ++ N + + DG T LH AA + E V +++
Sbjct: 7 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 66
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D G+T LH AA GH I ++LK+ D + +D G T LHLAA +G+ +V +
Sbjct: 67 D--GYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 248 IR 249
++
Sbjct: 121 LK 122
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 72/171 (42%), Gaps = 56/171 (32%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
G TPLH+AA+ H +VEVL+K +G D + ++++ T LH A A
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLK----------AGAD-----VNAKDKDGYTPLHLA---A 76
Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGW 192
+G +E+V E+L L A NA +D+ G+
Sbjct: 77 REGHLEIV-EVL----------------LKAGADVNA-----------------KDKDGY 102
Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERV 243
T LH AA GH I ++LK+ D + +D G T LA G E +
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGAD----VNAQDKFGKTPFDLAIDNGNEDI 149
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 10/84 (11%)
Query: 56 EGILEMCPSLL-----LQVNDK-GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDW 109
EG LE+ LL + DK G TPLH+AA+ H +VEVL+K + + + G
Sbjct: 78 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFG--K 135
Query: 110 IRWMLLVENEEKNTALHEAVQSAA 133
+ L ++N ++ A E +Q AA
Sbjct: 136 TPFDLAIDNGNEDIA--EVLQKAA 157
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 8/116 (6%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
+D+ G+T LH AA GH I ++LK+ D + +D G T LHLAA +G+ +V
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEV 86
Query: 247 IIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPL 302
+++ + D G+ H A +++ LL+ + ++ +DK G TP
Sbjct: 87 LLK-AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG---ADVNAQDKFGKTPF 138
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLH-AAVICNAEDVXXXXXXXXXXXTRER 187
+++A G + V ++ N + + DG T LH AA + E V +++
Sbjct: 7 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 66
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D G+T LH AA GH I ++LK+ D + +D G T LHLAA +G+ +V +
Sbjct: 67 D--GYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVL 120
Query: 248 IR 249
++
Sbjct: 121 LK 122
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 74/171 (43%), Gaps = 56/171 (32%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
G TPLH+AA+ H +VEVL+K +G D + ++++ T LH A A
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLK----------AGAD-----VNAKDKDGYTPLHLA---A 76
Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGW 192
+G +E+V E+L L A NA +D+ G+
Sbjct: 77 REGHLEIV-EVL----------------LKAGADVNA-----------------KDKDGY 102
Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERV 243
T LH AA GH I ++LK+ D + +D G T LA +G+E +
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGAD----VNAQDKFGKTPFDLAIREGHEDI 149
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
+++A G + V ++ N + G+T LH V+ N D
Sbjct: 19 LEAARAGQDDEVRILMANGADVNANDWFGITPLHL-VVNNGHLEIIEVLLKYAADVNASD 77
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
+ GWT LH AAY GH I ++LK D + D +G T LHLAA G+ +V ++
Sbjct: 78 KSGWTPLHLAAYRGHLEIVEVLLKYGAD----VNAMDYQGYTPLHLAAEDGHLEIVEVLL 133
Query: 249 RHCPE 253
++ +
Sbjct: 134 KYGAD 138
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 65/169 (38%), Gaps = 56/169 (33%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
G TPLH+ H ++EVL+K+A + +SG W T LH A A
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASDKSG--W-------------TPLHLA---A 88
Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGW 192
+G +E+V +L+ G D NA D G+
Sbjct: 89 YRGHLEIVEVLLK-------YGAD----------VNA-----------------MDYQGY 114
Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
T LH AA GH I ++LK D + +D G TA ++ G E
Sbjct: 115 TPLHLAAEDGHLEIVEVLLKYGAD----VNAQDKFGKTAFDISIDNGNE 159
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 228 GMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYV 287
G+T LHL + G+ ++ ++++ + + D GW H A +++ LL+
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAAD-VNASDKSGWTPLHLAAYRGHLEIVEVLLKYG-- 103
Query: 288 ISLIHGRDKNGNTPLHVLA 306
+ ++ D G TPLH+ A
Sbjct: 104 -ADVNAMDYQGYTPLHLAA 121
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 72 KGDTPLHVAAKCRHPAVVEVLIKFA 96
+G TPLH+AA+ H +VEVL+K+
Sbjct: 112 QGYTPLHLAAEDGHLEIVEVLLKYG 136
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 4/66 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D G T LH AA LGH I ++LK D + ED+ G+T LHLAA +G+ +V +
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKYGAD----VNAEDNFGITPLHLAAIRGHLEIVEVL 99
Query: 248 IRHCPE 253
++H +
Sbjct: 100 LKHGAD 105
Score = 34.7 bits (78), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 69 VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEA 128
+++ G TPLH+AA+ H +VEVL+K+ + E G+ T LH A
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGI---------------TPLHLA 87
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDV 172
A +G +E+V +L++ + + G T ++ ED+
Sbjct: 88 ---AIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
+++A G + V ++ N + DGLT LH A ++ E D
Sbjct: 19 LEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAE-D 77
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
G T LH AA GH I ++LK D + +D G TA ++ G E
Sbjct: 78 NFGITPLHLAAIRGHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDNGNE 126
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D G+T LH AA GH I ++LK+ D + D G+T LHLAA+ G+ +V +
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGAD----VNASDLTGITPLHLAAATGHLEIVEVL 99
Query: 248 IRHCPESYSIVDNRGWNARHFA 269
++H + + DN G H A
Sbjct: 100 LKHGAD-VNAYDNDGHTPLHLA 120
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 69 VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEA 128
++ G TPLH+AA H +VEVL+K + +G+ T LH A
Sbjct: 43 TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGI---------------TPLHLA 87
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAA 164
AA G +E+V +L++ + DG T LH A
Sbjct: 88 ---AATGHLEIVEVLLKHGADVNAYDNDGHTPLHLA 120
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 53 EFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIK 94
E VE +L+ + ND G TPLH+AAK H +VEVL+K
Sbjct: 94 EIVEVLLKHGADVNAYDND-GHTPLHLAAKYGHLEIVEVLLK 134
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
+++AA G + V ++ N + +GLT LH A N + D
Sbjct: 11 LEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAA-ANGQLEIVEVLLKNGADVNASD 69
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
G T LH AAY GH I ++LK D V Y D G T LHLAA G +V ++
Sbjct: 70 SAGITPLHLAAYDGHLEIVEVLLKHGAD--VNAY--DRAGWTPLHLAALSGQLEIVEVLL 125
Query: 249 RHCPE 253
+H +
Sbjct: 126 KHGAD 130
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 5/115 (4%)
Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRH 190
+AA G +E+V +L+N + G+T LH A ++ DR
Sbjct: 46 AAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD-VNAYDRA 104
Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
GWT LH AA G I ++LK D + +D G+TA ++ +QG E +
Sbjct: 105 GWTPLHLAALSGQLEIVEVLLKHGAD----VNAQDALGLTAFDISINQGQEDLAE 155
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 225 DDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
DD G+T LHLAA+ G +V ++++ + + D+ G H A +++ LL++
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 285 PYVISLIHGRDKNGNTPLHVLA 306
+ ++ D+ G TPLH+ A
Sbjct: 95 G---ADVNAYDRAGWTPLHLAA 113
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
G TPLH+AA H +VEVL+K + +G W T LH A S
Sbjct: 72 GITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAG--W-------------TPLHLAALS- 115
Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDV 172
G +E+V +L++ + + GLT ++ ED+
Sbjct: 116 --GQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDL 153
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 24/232 (10%)
Query: 55 VEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWML 114
V+ +L PSLLLQ + G PLH + + + L+ +K ++ L+ D W
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGW-- 73
Query: 115 LVENEEKNTALHEAVQSAAKGSVEMVAEILENC--PSADHRGPDGLTTLHAAVICNAEDV 172
T H A + G++E+V + + P + G+T LH AV +V
Sbjct: 74 --------TPFHIA---CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 173 XXXXXXXXXXXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTAL 232
R +D+ LH AA +G + ++ A+ +D +G T L
Sbjct: 123 SQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS---AVNWQDKQGWTPL 178
Query: 233 HLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
A ++G+ ++ Y +VDN+G A V+L V K L N
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED---VALNEQVKKFFLNN 227
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 24/232 (10%)
Query: 55 VEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWML 114
V+ +L PSLLLQ + G PLH + + + L+ +K ++ L+ D W
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGW-- 73
Query: 115 LVENEEKNTALHEAVQSAAKGSVEMVAEILENC--PSADHRGPDGLTTLHAAVICNAEDV 172
T H A + G++E+V + + P + G+T LH AV +V
Sbjct: 74 --------TPFHIA---CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 173 XXXXXXXXXXXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTAL 232
R +D+ LH AA +G + ++ A+ +D +G T L
Sbjct: 123 SQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS---AVNWQDKQGWTPL 178
Query: 233 HLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
A ++G+ ++ Y +VDN+G A V+L V K L N
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED---VALNEQVKKFFLNN 227
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 40/66 (60%), Gaps = 4/66 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D G T LH AA+ GH I ++LK+ D + +DD G+T LHLAA++G+ +V +
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGAD----VNAKDDNGITPLHLAANRGHLEIVEVL 132
Query: 248 IRHCPE 253
+++ +
Sbjct: 133 LKYGAD 138
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
GWT LH AAY GH I ++LK+ D V Y D G T LHLAA G+ +V ++++
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNGAD--VNAY--DTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 251 CPESYSIVDN 260
+ + DN
Sbjct: 103 GADVNAKDDN 112
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 18/92 (19%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
G TPLH+AA H +VEVL+K +G D + L +T LH A A
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLK----------NGADVNAYDTL-----GSTPLHLA---A 88
Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAA 164
G +E+V +L+N + + +G+T LH A
Sbjct: 89 HFGHLEIVEVLLKNGADVNAKDDNGITPLHLA 120
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 70 NDKGDTPLHVAAKCRHPAVVEVLIKFA 96
+D G TPLH+AA H +VEVL+K+
Sbjct: 110 DDNGITPLHLAANRGHLEIVEVLLKYG 136
Score = 31.2 bits (69), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 18/100 (18%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
G TPLH+AA H +VEVL+K + + ++G+ T LH A A
Sbjct: 80 GSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGI---------------TPLHLA---A 121
Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDV 172
+G +E+V +L+ + + G T ++ ED+
Sbjct: 122 NRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDL 161
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 94/232 (40%), Gaps = 24/232 (10%)
Query: 55 VEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWML 114
V+ +L PSLLLQ + G PLH + + + L+ +K ++ L+ D W
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL--SKMENVNLDDYPDDSGW-- 73
Query: 115 LVENEEKNTALHEAVQSAAKGSVEMVAEILENC--PSADHRGPDGLTTLHAAVICNAEDV 172
T H A + G++E+V + + P + G+T LH AV +V
Sbjct: 74 --------TPFHIA---CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 173 XXXXXXXXXXXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTAL 232
R +D+ LH AA +G + ++ A+ +D +G T L
Sbjct: 123 SQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS---AVNWQDKQGWTPL 178
Query: 233 HLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
A ++G+ ++ Y +VDN+G A V+L V K L N
Sbjct: 179 FHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED---VALNEQVKKFFLNN 227
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 44/83 (53%), Gaps = 5/83 (6%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
+D+ G+T LH AA GH I ++LK+ D + +D G T LHLAA +G+ +V
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEV 98
Query: 247 IIRHCPESYSIVDNRGWNARHFA 269
+++ + + D G+ H A
Sbjct: 99 LLKAGAD-VNAKDKDGYTPLHLA 120
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLH-AAVICNAEDVXXXXXXXXXXXTRER 187
+++A G + V ++ N + + DG T LH AA + E V +++
Sbjct: 19 LEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK 78
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D G+T LH AA GH I ++LK+ D + +D G T LHLAA +G+ +V +
Sbjct: 79 D--GYTPLHLAAREGHLEIVEVLLKAGAD----VNAKDKDGYTPLHLAAREGHLEIVEVL 132
Query: 248 IR 249
++
Sbjct: 133 LK 134
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 72/169 (42%), Gaps = 56/169 (33%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
G TPLH+AA+ H +VEVL+K +G D + ++++ T LH A A
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLK----------AGAD-----VNAKDKDGYTPLHLA---A 88
Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGW 192
+G +E+V E+L L A NA +D+ G+
Sbjct: 89 REGHLEIV-EVL----------------LKAGADVNA-----------------KDKDGY 114
Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
T LH AA GH I ++LK+ D + +D G TA ++ G E
Sbjct: 115 TPLHLAAREGHLEIVEVLLKAGAD----VNAQDKFGKTAFDISIDNGNE 159
Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 56 EGILEMCPSLL-----LQVNDK-GDTPLHVAAKCRHPAVVEVLIK 94
EG LE+ LL + DK G TPLH+AA+ H +VEVL+K
Sbjct: 90 EGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 8/117 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D GWT LH AA+ GH I ++LK+ D + D GMT L LAA G+ +V +
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGAD----VNAVDHAGMTPLRLAALFGHLEIVEVL 99
Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV 304
+++ + + D G H A + +++ LL+N + ++ +DK G T +
Sbjct: 100 LKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNG---ADVNAQDKFGKTAFDI 152
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 224 EDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLE 283
ED G T LHLAA G+ +V ++++ + + VD+ G A + +++ LL+
Sbjct: 43 EDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLK 101
Query: 284 NPYVISLIHGRDKNGNTPLHVLA 306
N + ++ D G+TPLH+ A
Sbjct: 102 NG---ADVNANDMEGHTPLHLAA 121
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 63/169 (37%), Gaps = 56/169 (33%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
G TPLH+AA H +VEVL+K + +G+ +R L
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF---------------- 90
Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGW 192
G +E+V +L+N G D NA D+ G
Sbjct: 91 --GHLEIVEVLLKN-------GAD----------VNANDM-----------------EGH 114
Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
T LH AA GH I ++LK+ D + +D G TA ++ G E
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGAD----VNAQDKFGKTAFDISIDNGNE 159
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 8/52 (15%)
Query: 49 RVSTEFVEGILEMCPSLL-----LQVND-KGDTPLHVAAKCRHPAVVEVLIK 94
R++ F G LE+ LL + ND +G TPLH+AA H +VEVL+K
Sbjct: 85 RLAALF--GHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK 134
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 77/178 (43%), Gaps = 16/178 (8%)
Query: 126 HEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTR 185
+E +AA+G +E + +L+N + + + G T L + N E +
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 66
Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
DR G+ +H AA G + +L+++ D + ED+ G LHLAA +G+ RVV
Sbjct: 67 --DRTGFAVIHDAARAGFLDTLQTLLENQADVNI----EDNEGNLPLHLAAKEGHLRVVE 120
Query: 246 RIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLH 303
+++H + +++G A A + R V+SL+ G T L
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRN----------EVVSLMQANGAGGATNLQ 168
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 70 NDKGDTPLHVAAKCRHPAVVEVLIK 94
+++G+ PLH+AAK H VVE L+K
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 16/178 (8%)
Query: 126 HEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTR 185
+E +AA+G +E + +L+N + + + G T L + N E +
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 66
Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
DR G+ +H AA G + +L+ + D + ED+ G LHLAA +G+ RVV
Sbjct: 67 --DRTGFAVIHDAARAGQLDTLQTLLEFQADVNI----EDNEGNLPLHLAAKEGHLRVVE 120
Query: 246 RIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLH 303
+++H + +++G A A + R V+SL+ G T L
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRN----------EVVSLMQANGAGGATNLQ 168
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 70 NDKGDTPLHVAAKCRHPAVVEVLIK 94
+++G+ PLH+AAK H VVE L+K
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 76/178 (42%), Gaps = 16/178 (8%)
Query: 126 HEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTR 185
+E +AA+G +E + +L+N + + + G T L + N E +
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 66
Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
DR G+ +H AA G + +L+ + D + ED+ G LHLAA +G+ RVV
Sbjct: 67 --DRTGFAVIHDAARAGFLDTLQTLLEFQADVNI----EDNEGNLPLHLAAKEGHLRVVE 120
Query: 246 RIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLH 303
+++H + +++G A A + R V+SL+ G T L
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRN----------EVVSLMQANGAGGATNLQ 168
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 70 NDKGDTPLHVAAKCRHPAVVEVLIK 94
+++G+ PLH+AAK H VVE L+K
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 126 HEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTR 185
+E +AA+G +E + +L+N + + + G T L + N E +
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 66
Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
DR G+ +H AA G + +L+ + D + ED+ G LHLAA +G+ RVV
Sbjct: 67 --DRTGFAVIHDAARAGFLDTLQTLLEFQADVNI----EDNEGNLPLHLAAKEGHLRVVE 120
Query: 246 RIIRHCPESYSIVDNRG 262
+++H + +++G
Sbjct: 121 FLVKHTASNVGHRNHKG 137
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 70 NDKGDTPLHVAAKCRHPAVVEVLIK 94
+++G+ PLH+AAK H VVE L+K
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D HG++ LH A G S + M++ +I + + DD T LHLAAS G+ +V+++
Sbjct: 36 DDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDD---TPLHLAASHGHRDIVQKL 91
Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAA 307
+++ + V+ G H+A + V + L+ N ++S+ +K G P+ A
Sbjct: 92 LQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC---NKYGEMPVDKAKA 147
Query: 308 ACRD 311
R+
Sbjct: 148 PLRE 151
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D HG++ LH A G S + M++ +I + + DD T LHLAAS G+ +V+++
Sbjct: 31 DDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDD---TPLHLAASHGHRDIVQKL 86
Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAA 307
+++ + V+ G H+A + V + L+ N ++S+ +K G P+ A
Sbjct: 87 LQY-KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSIC---NKYGEMPVDKAKA 142
Query: 308 ACRD 311
R+
Sbjct: 143 PLRE 146
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 35/147 (23%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D+ T+LH A GH+ I +L+ V + +DD G + LH+AAS G + +V+ +
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLG----VPVNDKDDAGWSPLHIAASAGRDEIVKAL 92
Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLE---NP-----YVISLIHG------ 293
+ + + V+ G H+A R + LLE NP Y + +H
Sbjct: 93 LGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 151
Query: 294 ----------------RDKNGNTPLHV 304
+D GNTPLH+
Sbjct: 152 LKMIHILLYYKASTNIQDTEGNTPLHL 178
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 38/187 (20%)
Query: 9 AAKGEIEPFNE--IAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLL 66
A G++E E +A L + + T LH ++ TE VE +L+ L
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGH------TEIVEFLLQ----LG 63
Query: 67 LQVNDKGD---TPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRW----------- 112
+ VNDK D +PLH+AA +V+ L+ + + ++G + +
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 123
Query: 113 MLL-------VENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAV 165
MLL ++ + TA+H A AAKG+++M+ +L S + + +G T LH A
Sbjct: 124 MLLEGGANPDAKDHYEATAMHRA---AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA- 179
Query: 166 ICNAEDV 172
C+ E V
Sbjct: 180 -CDEERV 185
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 35/147 (23%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D+ T+LH A GH+ I +L+ V + +DD G + LH+AAS G + +V+ +
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLG----VPVNDKDDAGWSPLHIAASAGRDEIVKAL 93
Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLE---NP-----YVISLIHG------ 293
+ + + V+ G H+A R + LLE NP Y + +H
Sbjct: 94 LGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGN 152
Query: 294 ----------------RDKNGNTPLHV 304
+D GNTPLH+
Sbjct: 153 LKMIHILLYYKASTNIQDTEGNTPLHL 179
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 38/187 (20%)
Query: 9 AAKGEIEPFNE--IAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLL 66
A G++E E +A L + + T LH ++ TE VE +L+ L
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGH------TEIVEFLLQ----LG 64
Query: 67 LQVNDKGD---TPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRW----------- 112
+ VNDK D +PLH+AA +V+ L+ + + ++G + +
Sbjct: 65 VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 124
Query: 113 MLL-------VENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAV 165
MLL ++ + TA+H A AAKG+++M+ +L S + + +G T LH A
Sbjct: 125 MLLEGGANPDAKDHYEATAMHRA---AAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA- 180
Query: 166 ICNAEDV 172
C+ E V
Sbjct: 181 -CDEERV 186
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 68/173 (39%), Gaps = 56/173 (32%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
G TPLH+AAK H +VEVL+K+ G D W + T LH A A
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKY----------GADVNAW-----DNYGATPLHLA---A 88
Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGW 192
G +E+V +L+ G D NA+D G+
Sbjct: 89 DNGHLEIVEVLLK-------HGAD----------VNAKDY-----------------EGF 114
Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
T LH AAY GH I ++LK D + +D G TA ++ G E +
Sbjct: 115 TPLHLAAYDGHLEIVEVLLKYGAD----VNAQDKFGKTAFDISIDNGNEDLAE 163
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 8/117 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D G T LH AA GH I ++LK D + D+ G T LHLAA G+ +V +
Sbjct: 44 DWLGHTPLHLAAKTGHLEIVEVLLKYGAD----VNAWDNYGATPLHLAADNGHLEIVEVL 99
Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV 304
++H + + D G+ H A +++ LL+ + ++ +DK G T +
Sbjct: 100 LKHGAD-VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG---ADVNAQDKFGKTAFDI 152
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 6/46 (13%)
Query: 57 GILEMCPSLL---LQVNDK---GDTPLHVAAKCRHPAVVEVLIKFA 96
G LE+ LL VN K G TPLH+AA H +VEVL+K+
Sbjct: 91 GHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG 136
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 224 EDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLE 283
EDD G T LHLAA +G+ +V +++H + + D G H A + +++ LL+
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADKMGDTPLHLAALYGHLEIVEVLLK 101
Query: 284 NPYVISLIHGRDKNGNTPLHVLAAA 308
N + ++ D G TPLH+ A A
Sbjct: 102 NG---ADVNATDTYGFTPLHLAADA 123
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D+ G T LH AA GH I ++LK+ D + D G T LHLAA G+ +V +
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGAD----VNATDTYGFTPLHLAADAGHLEIVEVL 132
Query: 248 IRHCPE 253
+++ +
Sbjct: 133 LKYGAD 138
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 68/174 (39%), Gaps = 56/174 (32%)
Query: 70 NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
+D G TPLH+AA H +VEVL+K + + G +T LH A
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMG---------------DTPLHLA- 87
Query: 130 QSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDR 189
A G +E+V +L+N G D NA D
Sbjct: 88 --ALYGHLEIVEVLLKN-------GAD----------VNATDT----------------- 111
Query: 190 HGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERV 243
+G+T LH AA GH I ++LK D + +D G TA ++ G E +
Sbjct: 112 YGFTPLHLAADAGHLEIVEVLLKYGAD----VNAQDKFGKTAFDISIDNGNEDL 161
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 55 VEGILEMCPSLL-----LQVNDK-GDTPLHVAAKCRHPAVVEVLIK 94
++G LE+ LL + DK GDTPLH+AA H +VEVL+K
Sbjct: 56 IKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLK 101
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 70/171 (40%), Gaps = 43/171 (25%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D+ T+LH A GH+ I +L+ V + +DD G + LH+AAS G + +V+ +
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLG----VPVNDKDDAGWSPLHIAASAGXDEIVKAL 92
Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLE---NP-----YVISLIHG------ 293
+ + V+ G H+A R + LLE NP Y + +H
Sbjct: 93 LVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151
Query: 294 ----------------RDKNGNTPLHVLAAAC-----RDSSYFIVPDSDMY 323
+D GNTPLH+ AC ++ + + + +Y
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHL---ACDEERVEEAKFLVTQGASIY 199
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 38/187 (20%)
Query: 9 AAKGEIEPFNE--IAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLL 66
A G+++ E +A L + + T LH ++ TE VE +L+ L
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH------TEIVEFLLQ----LG 63
Query: 67 LQVNDKGD---TPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRW----------- 112
+ VNDK D +PLH+AA +V+ L+ + ++G + +
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV 123
Query: 113 MLL-------VENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAV 165
MLL ++ TA+H A AAKG+++MV +L S + + +G T LH A
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRA---AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA- 179
Query: 166 ICNAEDV 172
C+ E V
Sbjct: 180 -CDEERV 185
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 16/178 (8%)
Query: 126 HEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTR 185
+E +AA+G +E + +L+N + + + G T L + N E +
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 66
Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
DR G +H AA G + +L+ + D + ED+ G LHLAA +G+ RVV
Sbjct: 67 --DRTGNAVIHDAARAGFLDTLQTLLEFQADVNI----EDNEGNLPLHLAAKEGHLRVVE 120
Query: 246 RIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLH 303
+++H + +++G A A + R V+SL+ G T L
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLARLYGRN----------EVVSLMQANGAGGATNLQ 168
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 70 NDKGDTPLHVAAKCRHPAVVEVLIK 94
+++G+ PLH+AAK H VVE L+K
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVK 124
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 36/184 (19%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D+ T+LH A GH+ I +L+ V + +DD G + LH+AAS G + +V+ +
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLG----VPVNDKDDAGWSPLHIAASAGRDEIVKAL 92
Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLE---NP-----YVISLIHG------ 293
+ + V+ G H+A R + LLE NP Y + +H
Sbjct: 93 LVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGN 151
Query: 294 ----------------RDKNGNTPLHVLAAACR-DSSYFIVPDSDMYEAVNKQNTSVEHI 336
+D GNTPLH+ R + + F+V NK+ + +
Sbjct: 152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211
Query: 337 VRYG 340
+ G
Sbjct: 212 AKGG 215
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 38/187 (20%)
Query: 9 AAKGEIEPFNE--IAKDELVSIATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLL 66
A G+++ E +A L + + T LH ++ TE VE +L+ L
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGH------TEIVEFLLQ----LG 63
Query: 67 LQVNDKGD---TPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRW----------- 112
+ VNDK D +PLH+AA +V+ L+ + ++G + +
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV 123
Query: 113 MLL-------VENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAV 165
MLL ++ TA+H A AAKG+++MV +L S + + +G T LH A
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRA---AAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA- 179
Query: 166 ICNAEDV 172
C+ E V
Sbjct: 180 -CDEERV 185
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D +G T LH AA LGH I ++LK D + +D G+T L+LAA G+ +V +
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGAD----VNAKDATGITPLYLAAYWGHLEIVEVL 120
Query: 248 IRHCPE 253
++H +
Sbjct: 121 LKHGAD 126
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLH-AAVICNAEDVXXXXXXXXX 181
T LH A AA G +E+V +L N + +G T LH AA + + E V
Sbjct: 37 TPLHMA---AAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD 93
Query: 182 XXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
+D G T L+ AAY GH I ++LK D + +D G TA ++ G E
Sbjct: 94 --VNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDIGNE 147
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 69 VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGV 107
V+ G TPLH+AA H +VEVL+K+ + + +G+
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGI 102
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 8/117 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D G T LH AA GH I ++LK D + D G T LHLAA G+ +V +
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGAD----VNAIDIMGSTPLHLAALIGHLEIVEVL 99
Query: 248 IRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV 304
++H + + VD G H A + +++ LL++ + ++ +DK G T +
Sbjct: 100 LKHGAD-VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG---ADVNAQDKFGKTAFDI 152
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 225 DDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
D G+T LHLAA+ G+ +V +++H + +I D G H A + +++ LL+
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DIMGSTPLHLAALIGHLEIVEVLLK- 101
Query: 285 PYVISLIHGRDKN-----GNTPLHVLA 306
HG D N G+TPLH+ A
Sbjct: 102 -------HGADVNAVDTWGDTPLHLAA 121
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 69 VNDKGDTPLHVAAKCRHPAVVEVLIK 94
V+ GDTPLH+AA H +VEVL+K
Sbjct: 109 VDTWGDTPLHLAAIMGHLEIVEVLLK 134
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIK 94
G TPLH+AA H +VEVL+K
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLK 101
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 65/169 (38%), Gaps = 56/169 (33%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
G TPLH+AA H +VEVL+K V+ I M +T LH A A
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLKHGAD--------VNAIDIM-------GSTPLHLA---A 88
Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGW 192
G +E+V +L++ G D NA D G
Sbjct: 89 LIGHLEIVEVLLKH-------GAD----------VNAVDTW-----------------GD 114
Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
T LH AA +GH I ++LK D + +D G TA ++ G E
Sbjct: 115 TPLHLAAIMGHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDNGNE 159
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
+D++G T LH AA GH + ++L++ D + +D G T LHLAA G+ VV+
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 247 II 248
++
Sbjct: 87 LL 88
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 11/96 (11%)
Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
G T LH AA GH + ++L++ D + +D G T LHLAA G+ VV+ ++
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAARNGHLEVVKLLL-- 55
Query: 251 CPESYSIVDNRGWNARHFAMVSLRGG---VLKSLLE 283
E+ + V+ + N R ++ R G V+K LLE
Sbjct: 56 --EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 13/93 (13%)
Query: 228 GMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGG---VLKSLLEN 284
G T LHLAA G+ VV+ ++ E+ + V+ + N R ++ R G V+K LLE
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL----EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE- 56
Query: 285 PYVISLIHGRDKNGNTPLHVLAAACRDSSYFIV 317
+ ++ +DKNG TPLH+ A R+ +V
Sbjct: 57 --AGADVNAKDKNGRTPLHL---AARNGHLEVV 84
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 22/94 (23%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKN--TALHEAVQ 130
G TPLH+AA+ H VV++L LE+G D V ++KN T LH A +
Sbjct: 2 GRTPLHLAARNGHLEVVKLL----------LEAGAD-------VNAKDKNGRTPLHLAAR 44
Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAA 164
+ G +E+V +LE + + +G T LH A
Sbjct: 45 N---GHLEVVKLLLEAGADVNAKDKNGRTPLHLA 75
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 56/125 (44%), Gaps = 5/125 (4%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
+++A G + V ++ N + GLT LH A + ++ D
Sbjct: 19 LEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAAD 77
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
+G+T LH AA GH I ++LK D + D G T LHLAA +G+ +V ++
Sbjct: 78 VYGFTPLHLAAMTGHLEIVEVLLKYGAD----VNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Query: 249 RHCPE 253
++ +
Sbjct: 134 KYGAD 138
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 225 DDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
D+ G+T LHLAA G+ +V +++H + D G+ H A ++ +++ LL+
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLKY 102
Query: 285 PYVISLIHGRDKNGNTPLHVLA 306
+ ++ D G+TPLH+ A
Sbjct: 103 G---ADVNAFDMTGSTPLHLAA 121
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 51/128 (39%), Gaps = 5/128 (3%)
Query: 118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXX 177
N NT L +A G +E+V +L++ D G T LH A + ++
Sbjct: 41 NAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEI-VEVL 99
Query: 178 XXXXXXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS 237
D G T LH AA GH I ++LK D + +D G TA ++
Sbjct: 100 LKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD----VNAQDKFGKTAFDISID 155
Query: 238 QGYERVVR 245
G E + +
Sbjct: 156 NGNEDLAK 163
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 55 VEGILEMCPSLLLQVND------KGDTPLHVAAKCRHPAVVEVLIKFA 96
V G LE+ LL D G TPLH+AA H +VEVL+K+
Sbjct: 56 VSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYG 103
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFA 96
G TPLH+AA H +VEVL+K+
Sbjct: 113 GSTPLHLAADEGHLEIVEVLLKYG 136
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 69 VNDKGDTPLHVAAKCRHPAVVEVLIK 94
V++ G TPLH+AA H +VEVL+K
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLK 68
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D +G T LH AA +GH I ++LK+ D + AL D G T LHLAA +G+ +V +
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNAL---DFSGSTPLHLAAKRGHLEIVEVL 99
Query: 248 IRHCPE 253
+++ +
Sbjct: 100 LKYGAD 105
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 66/169 (39%), Gaps = 56/169 (33%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
GDTPLH+AA+ H +VEVL+K + SG +T LH A A
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADVNALDFSG---------------STPLHLA---A 88
Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGW 192
+G +E+V +L+ G D NA+D G
Sbjct: 89 KRGHLEIVEVLLK-------YGAD----------VNADDTI-----------------GS 114
Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
T LH AA GH I ++LK D + +D G TA ++ G E
Sbjct: 115 TPLHLAADTGHLEIVEVLLKYGAD----VNAQDKFGKTAFDISIDNGNE 159
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D G T LH AA GH I ++LK D + +D G T LHLAA G+ +V +
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKYGAD----VNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 248 IRHCPE 253
+++ +
Sbjct: 133 LKYGAD 138
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Query: 224 EDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLE 283
ED G T LHLAA G+ +V ++++ + + +D G H A +++ LL+
Sbjct: 43 EDTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDFSGSTPLHLAAKRGHLEIVEVLLK 101
Query: 284 NPYVISLIHGRDKNGNTPLHVLA 306
+ ++ D G+TPLH+ A
Sbjct: 102 YG---ADVNADDTIGSTPLHLAA 121
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 4/114 (3%)
Query: 224 EDDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLE 283
+D G T LHLAA +G+ VV+ ++ + + D+ GW +A ++K LL
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS 132
Query: 284 NPYVISLIHGRDKNGNTPLHVLA-AACRDSSYFIVPDSDMYEAVNKQNTSVEHI 336
I++ RD N LH A + C D + ++ AVN S HI
Sbjct: 133 KGSDINI---RDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
+D G T LH AA GH + +L + + +DD G T + A + +V+
Sbjct: 73 KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC---QDDGGWTPMIWATEYKHVDLVKL 129
Query: 247 IIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVLA 306
++ +I DN H+A S + + LL +H + +G++PLH+
Sbjct: 130 LLSK-GSDINIRDNEENICLHWAAFSGCVDIAEILLA---AKCDLHAVNIHGDSPLHI-- 183
Query: 307 AACRDSSY-----FIVPDSDM 322
A R++ Y F+ DSD+
Sbjct: 184 -AARENRYDCVVLFLSRDSDV 203
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 85/230 (36%), Gaps = 26/230 (11%)
Query: 75 TPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAK 134
+PLH AA+ H + +L++ + +D +E++ T L EA A
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAG--------ANID-------TCSEDQRTPLMEA---AEN 54
Query: 135 GSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGWTS 194
+E V +++ D + +G T LH A +V +D GWT
Sbjct: 55 NHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP 114
Query: 195 LHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPES 254
+ A H ++ ++L D + D+ LH AA G + I+
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSD----INIRDNEENICLHWAAFSGCVDIA-EILLAAKCD 169
Query: 255 YSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHV 304
V+ G + H A R + L ++L ++K G TPL
Sbjct: 170 LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL---KNKEGETPLQC 216
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 219 VALYKEDDR-GMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGV 277
+L+ + DR G TALHLAA+ +R++ ++ +I DN G H A+ + GV
Sbjct: 47 ASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGV 105
Query: 278 LKSLLENPYVISLIHGRDKNGNTPLHVLAA 307
+ L+ N + + R +G TPL +LAA
Sbjct: 106 FQILIRNR--ATDLDARMHDGTTPL-ILAA 132
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXX 182
TALH A AA + +LE A+ + G T LHAAV +A+ V
Sbjct: 59 TALHLA---AAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 115
Query: 183 XTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALH 233
R G T L AA L + ++ S D + DD G +ALH
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHAD----VNAVDDLGKSALH 162
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 5/125 (4%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
+++A G + V ++ N + GLT LH A ++ D
Sbjct: 19 LEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAID 77
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
G T LH AA +GH I ++LK D + D G T LHLAA G+ +V ++
Sbjct: 78 IXGSTPLHLAALIGHLEIVEVLLKHGAD----VNAVDTWGDTPLHLAAIMGHLEIVEVLL 133
Query: 249 RHCPE 253
+H +
Sbjct: 134 KHGAD 138
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 225 DDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
D G+T LHLAA+ G+ +V +++H + +I D G H A + +++ LL+
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DIXGSTPLHLAALIGHLEIVEVLLK- 101
Query: 285 PYVISLIHGRDKN-----GNTPLHVLA 306
HG D N G+TPLH+ A
Sbjct: 102 -------HGADVNAVDTWGDTPLHLAA 121
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 69 VNDKGDTPLHVAAKCRHPAVVEVLIK 94
V+ GDTPLH+AA H +VEVL+K
Sbjct: 109 VDTWGDTPLHLAAIMGHLEIVEVLLK 134
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIK 94
G TPLH+AA H +VEVL+K
Sbjct: 80 GSTPLHLAALIGHLEIVEVLLK 101
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 10/120 (8%)
Query: 123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLH-AAVICNAEDVXXXXXXXXX 181
T LH A A G +E+V +L++ + G T LH AA+I + E V
Sbjct: 49 TPLHLA---ATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 182 XXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
D G T LH AA +GH I ++LK D + +D G TA ++ G E
Sbjct: 106 --VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDNGNE 159
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIK 94
G TPLH+AA H +VEVL+K
Sbjct: 47 GLTPLHLAATYGHLEIVEVLLK 68
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 219 VALYKEDDR-GMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGV 277
+L+ + DR G TALHLAA +R++ ++ I DN G H A+ + GV
Sbjct: 12 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-XIQDNMGRTPLHAAVSADAQGV 70
Query: 278 LKSLLENPYVISLIHGRDKNGNTPLHVLAA 307
+ LL N + + R +G TPL +LAA
Sbjct: 71 FQILLRNR--ATDLDARMHDGTTPL-ILAA 97
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
DR G T LH AA H I ++LK D + D+ G T LHLAA G+ +V
Sbjct: 43 NDRKGNTPLHLAADYDHLEIVEVLLKHGAD----VNAHDNDGSTPLHLAALFGHLEIVEV 98
Query: 247 IIRHCPE 253
+++H +
Sbjct: 99 LLKHGAD 105
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 61 MCPSLLLQVND-KGDTPLHVAAKCRHPAVVEVLIK 94
M + ND KG+TPLH+AA H +VEVL+K
Sbjct: 34 MANGADVNANDRKGNTPLHLAADYDHLEIVEVLLK 68
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERV 243
D G T LH AA GH I ++LK D + +D G TA ++ G E +
Sbjct: 77 DNDGSTPLHLAALFGHLEIVEVLLKHGAD----VNAQDKFGKTAFDISIDNGNEDL 128
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 219 VALYKEDDR-GMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGV 277
+L+ + DR G TALHLAA +R++ ++ +I DN G H A+ + GV
Sbjct: 47 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGV 105
Query: 278 LKSLLENPYVISLIHGRDKNGNTPLHVLAA 307
+ L+ N + + R +G TPL +LAA
Sbjct: 106 FQILIRNR--ATDLDARMHDGTTPL-ILAA 132
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 219 VALYKEDDR-GMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGV 277
+L+ + DR G TALHLAA +R++ ++ +I DN G H A+ + GV
Sbjct: 15 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGV 73
Query: 278 LKSLLENPYVISLIHGRDKNGNTPLHVLAA 307
+ L+ N + + R +G TPL +LAA
Sbjct: 74 FQILIRNR--ATDLDARMHDGTTPL-ILAA 100
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 219 VALYKEDDR-GMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGV 277
+L+ + DR G TALHLAA +R++ ++ +I DN G H A+ + GV
Sbjct: 48 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGV 106
Query: 278 LKSLLENPYVISLIHGRDKNGNTPLHVLAA 307
+ L+ N + + R +G TPL +LAA
Sbjct: 107 FQILIRNR--ATDLDARMHDGTTPL-ILAA 133
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 47/221 (21%), Positives = 81/221 (36%), Gaps = 49/221 (22%)
Query: 68 QVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHE 127
+ ++ GDTPLH+A + V L+ ++ REL+ + N + T LH
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-----------IYNNLRQTPLHL 52
Query: 128 AVQSAAKGSVEMVAEILENCPSAD------------HRGP-------------------- 155
AV + V ++ + + D HR P
Sbjct: 53 AVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 112
Query: 156 --DGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGWTSLHHAAYLGHSNITSMMLKS 213
DGLT LH AV ++ + G + L HA ++ ++L+
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172
Query: 214 EDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPES 254
+ +Y G +ALH A+ +G +VR ++R +S
Sbjct: 173 GANVNAQMYS----GSSALHSASGRGLLPLVRTLVRSGADS 209
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCP 252
T LH AA GH+NI ++LK D + +D MTALH A ++ VV +I++
Sbjct: 69 TPLHMAASEGHANIVEVLLKHGAD----VNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124
Query: 253 ESYS 256
+ ++
Sbjct: 125 DVHT 128
Score = 32.0 bits (71), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 10/66 (15%)
Query: 191 GWTSLHHAAYLGHSNITSMMLK---SEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
G + LH AA GH + T ++L+ S D + DR T LH+AAS+G+ +V +
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKV-----DR--TPLHMAASEGHANIVEVL 86
Query: 248 IRHCPE 253
++H +
Sbjct: 87 LKHGAD 92
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 18/100 (18%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
G +PLH+AA+ H + EVL++ SR+ + VD T LH A A
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAG--VSRDARTKVD-------------RTPLHMA---A 75
Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDV 172
++G +V +L++ + + +T LH A N ++V
Sbjct: 76 SEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEV 115
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 3/61 (4%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D+ G T+L+ A + GH +I + + + L +++ G TALH AA +GY +V+ +
Sbjct: 103 DKAGSTALYWACHGGHKDIVEXLFTQPN---IELNQQNKLGDTALHAAAWKGYADIVQLL 159
Query: 248 I 248
+
Sbjct: 160 L 160
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D G T LH AA LGH I ++LK+ D + + G T LHLAA + +V +
Sbjct: 44 DYWGHTPLHLAAMLGHLEIVEVLLKNGAD----VNATGNTGRTPLHLAAWADHLEIVEVL 99
Query: 248 IRHCPE 253
++H +
Sbjct: 100 LKHGAD 105
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIK 94
G TPLH+AA H +VEVL+K
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLK 68
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIK 94
G TPLH+AA H +VEVL+K
Sbjct: 80 GRTPLHLAAWADHLEIVEVLLK 101
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 156 DGLTTLH-AAVICNAEDVXXXXXXXXXXXTRERDRHGWTSLHHAAYLGHSNITSMMLKSE 214
DG T LH AA +AE+V R +D G T LH AA GH+ I ++L
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKD--GNTPLHLAAKNGHAEIVKLLLAKG 65
Query: 215 DDKIVALYKEDDRGMTALHLAASQGYERVVR 245
D + A K+ G T HLA G+ +V+
Sbjct: 66 AD-VNARSKD---GNTPEHLAKKNGHHEIVK 92
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 18/92 (19%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
G+TPLH AAK H V+ L L G D + +++ NT LH A ++
Sbjct: 9 GNTPLHNAAKNGHAEEVKKL----------LSKGAD-----VNARSKDGNTPLHLAAKN- 52
Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHAA 164
G E+V +L + R DG T H A
Sbjct: 53 --GHAEIVKLLLAKGADVNARSKDGNTPEHLA 82
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRII 248
+ G T LH+AA GH+ +L D + A K+ G T LHLAA G+ +V+ ++
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKD---GNTPLHLAAKNGHAEIVKLLL 62
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 29 ATHEKNTVLHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAV 88
+ + NT LH N A E V +L + + D G+TPLH+AAK H +
Sbjct: 5 GSKDGNTPLH-NAAKNGHAEEVKK-----LLSKGADVNARSKD-GNTPLHLAAKNGHAEI 57
Query: 89 VEVLI 93
V++L+
Sbjct: 58 VKLLL 62
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
+D +G T L+ A GH I ++LK+ D + D G T LHLAA G+ +
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLLKNGAD----VNAVDAIGFTPLHLAAFIGHLEIAEV 98
Query: 247 IIRHCPE 253
+++H +
Sbjct: 99 LLKHGAD 105
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
D G+T LH AA++GH I ++LK D + +D G TA ++ G E
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGAD----VNAQDKFGKTAFDISIGNGNE 126
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 57/139 (41%), Gaps = 20/139 (14%)
Query: 195 LHHAAYLGHSNITSMMLKSE-DDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCPE 253
LH AA L + I ++L S DD + DD+G TAL+ A G + V+ ++
Sbjct: 66 LHQAATLEDTKIVKILLFSGLDDS-----QFDDKGNTALYYAVDSGNXQTVKLFVKKNWR 120
Query: 254 SYSIVDNRGWNARHF--------AMVSLRGGVLKSLLENPYVISLIHGRDKNGNTPLHVL 305
GW + ++VS + S + ++S IH KNG+ +L
Sbjct: 121 -LXFYGKTGWKTSFYHAVXLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVDXXIL 179
Query: 306 -----AAACRDSSYFIVPD 319
+ ++S +PD
Sbjct: 180 LLDYXTSTNTNNSLLFIPD 198
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 60/141 (42%), Gaps = 18/141 (12%)
Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCP 252
T LH AA ++ +L+ D ++ +D G+ LH A S G+ V +++H
Sbjct: 48 TPLHFAAGYNRVSVVEYLLQHGAD----VHAKDKGGLVPLHNACSYGHYEVAELLVKH-G 102
Query: 253 ESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRD-----KNGNTPLHVLAA 307
++ D + H A + + K LL+ HG D ++GNTPL ++
Sbjct: 103 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQ--------HGADPTKKNRDGNTPLDLVKD 154
Query: 308 ACRDSSYFIVPDSDMYEAVNK 328
D + D+ + +A K
Sbjct: 155 GDTDIQDLLRGDAALLDAAKK 175
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVA-LYKEDDRGMTALHLAASQGYERVVR 245
+D+ G LH+A GH + +++K VA L+K T LH AA++G + +
Sbjct: 75 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK-----FTPLHEAAAKGKYEICK 129
Query: 246 RIIRH 250
+++H
Sbjct: 130 LLLQH 134
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 85/214 (39%), Gaps = 26/214 (12%)
Query: 107 VDWIRWML-------LVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLT 159
VD ++ +L E E T LH AVQ + + VE+ +L + R +G T
Sbjct: 18 VDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVEL---LLRHGADPVLRKKNGAT 74
Query: 160 TLHAAVICNAEDVXXXXXXXXXXXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIV 219
A I + + E D +G+T+ AA G + K + +
Sbjct: 75 PFLLAAIAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL 133
Query: 220 ALYKEDDR------GMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSL 273
++D+ G TAL AA +G+ V++ ++ + DN G NA A++S
Sbjct: 134 RRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSS 193
Query: 274 RGGVLKSLLENPYVISLIHGRDKN-----GNTPL 302
S +E + L HG D N G TPL
Sbjct: 194 D----DSDVEAITHLLLDHGADVNVRGERGKTPL 223
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 69 VNDKGDTPLHVAAKCRHPAVVEVLIKF-AKKQSRELESGVDWIRWMLLVENEEKNTALHE 127
++D G TPLH+AAK H +VEVL+K A +R++ W R T LH
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDI-----WGR-----------TPLHL 86
Query: 128 AVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDV 172
A A G +E+V +LE + + G T ++ ED+
Sbjct: 87 A---ATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 225 DDRGMTALHLAASQGYERVVRRIIRHCPE 253
DD G+T LHLAA +G+ +V +++H +
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD 72
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D G T LH AA GH I ++LK D + D G T LHLAA+ G+ +V +
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD----VNASDSWGRTPLHLAATVGHLEIVEVL 99
Query: 248 IRHCPE 253
+ + +
Sbjct: 100 LEYGAD 105
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 18/104 (17%)
Query: 69 VNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEA 128
++D G TPLH+AAK H +VEVL+ K ++ + W R T LH A
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLL----KHGADVNASDSWGR-----------TPLHLA 87
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDV 172
A G +E+V +LE + + G T ++ ED+
Sbjct: 88 ---ATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 225 DDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
DD G+T LHLAA +G+ +V +++H + + D+ G H A +++ LLE
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 285 PYVISLIHGRDKNGNTPLHV 304
+ ++ +DK G T +
Sbjct: 103 G---ADVNAQDKFGKTAFDI 119
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 55/140 (39%), Gaps = 11/140 (7%)
Query: 123 TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXX 182
TALH AV S ++ +L + + + D +T LH A DV
Sbjct: 213 TALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK 272
Query: 183 XTRERDRHGWTSLHHAAYLGHSNITSMMLK-SEDDKIVALYKEDDRGMTALHLAASQGYE 241
D G T+LH AA GH ++L D I++L +G T AA G E
Sbjct: 273 MN-ALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL-----QGFT----AAQMGNE 322
Query: 242 RVVRRIIRHCPESYSIVDNR 261
V + + P S VD R
Sbjct: 323 AVQQILSESTPMRTSDVDYR 342
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
Query: 127 EAVQSAAKGSVEMVAEILE----NCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXX 182
E +++A G+ E + +L NC ++D R T LH A N +
Sbjct: 27 ELLEAARSGNEEKLMALLTPLNVNCHASDGRKS---TPLHLAAGYNRVRIVQLLLQHGAD 83
Query: 183 XTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYER 242
+D+ G LH+A GH +T ++LK + D T LH AAS+
Sbjct: 84 -VHAKDKGGLVPLHNACSYGHYEVTELLLKHG----ACVNAMDLWQFTPLHEAASKNRVE 138
Query: 243 VVRRIIRHCPESYSIVDNRGWNA 265
V ++ H + ++V+ G +A
Sbjct: 139 VCSLLLSHGADP-TLVNCHGKSA 160
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 4/104 (3%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
+ +A G +E+V + ++ +G+T LH A IC A D
Sbjct: 26 LDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNA-ICGANYSIVDFLITAGANVNSPD 84
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTAL 232
HGWT LH AA + + M L I A D G TA
Sbjct: 85 SHGWTPLHCAASC-NDTVICMALVQHGAAIFATTLSD--GATAF 125
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICN 168
NEE TALH A+ A V+ + N S D G T LH A CN
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVNSPDSH---GWTPLHCAASCN 98
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 79/197 (40%), Gaps = 19/197 (9%)
Query: 117 ENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXX 176
E E T LH AVQ + + VE+ +L + R +G T A I + +
Sbjct: 55 EEEGGWTPLHNAVQMSREDIVEL---LLRHGADPVLRKKNGATPFILAAIAGSVKLLKLF 111
Query: 177 XXXXXXXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDR------GMT 230
E D +G+T+ AA G + K + + ++D+ G T
Sbjct: 112 LSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 170
Query: 231 ALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISL 290
AL AA +G+ V++ ++ + DN G NA A++S S +E + L
Sbjct: 171 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD----DSDVEAITHLLL 226
Query: 291 IHGRDKN-----GNTPL 302
HG D N G TPL
Sbjct: 227 DHGADVNVRGERGKTPL 243
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 69 VNDKGDTPLHVAAKCRHPAVVEVLIK 94
++D G TPLH+AAK H +VEVL+K
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLK 68
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 188 DRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRI 247
D G T LH AA GH I ++LK D + D G T LHLAA+ G+ +V +
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGAD----VNASDIWGRTPLHLAATVGHLEIVEVL 99
Query: 248 IRHCPE 253
+ + +
Sbjct: 100 LEYGAD 105
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
+D GWT LH A GH + ++L+ + Y+ D + LH AA G+ +V+
Sbjct: 39 KDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND----SPLHDAAKNGHVDIVKL 94
Query: 247 IIRH 250
++ +
Sbjct: 95 LLSY 98
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 8/133 (6%)
Query: 118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXX 177
+EE T L + +AA G + +V +L+N G + L A D+
Sbjct: 31 DEEGFTPL---MWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL 87
Query: 178 XXXXXXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAAS 237
E D +G T L +A + H M+L+S D + E D G ++ LA +
Sbjct: 88 DCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI----ETDSGYNSMDLAVA 142
Query: 238 QGYERVVRRIIRH 250
GY V + I H
Sbjct: 143 LGYRSVQQVIESH 155
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 5/120 (4%)
Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRH 190
+AA G + +V +L+N G + L A D+ E D +
Sbjct: 59 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWN 117
Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
G T L +A + H M+L+S D + E D G ++ LA + GY V + I H
Sbjct: 118 GGTPLLYAVHGNHVKCVKMLLESGADPTI----ETDSGYNSMDLAVALGYRSVQQVIESH 173
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
D+ G T LH AA H I ++LK+ D + D G T LHL A G+ +V
Sbjct: 43 EDKVGLTPLHLAAMNDHLEIVEVLLKNGAD----VNAIDAIGETPLHLVAMYGHLEIVEV 98
Query: 247 IIRHCPE 253
+++H +
Sbjct: 99 LLKHGAD 105
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIK 94
G+TPLH+ A H +VEVL+K
Sbjct: 80 GETPLHLVAMYGHLEIVEVLLK 101
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 5/120 (4%)
Query: 131 SAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRH 190
+AA G + +V +L+N G + L A D+ E D +
Sbjct: 43 AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD-VNEYDWN 101
Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
G T L +A + H M+L+S D + E D G ++ LA + GY V + I H
Sbjct: 102 GGTPLLYAVHGNHVKCVKMLLESGADPTI----ETDSGYNSMDLAVALGYRSVQQVIESH 157
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 32.7 bits (73), Expect = 0.35, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
+D+ G+T LH AA GH I ++LK+ D + +D G TA ++ G E
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLLKAGAD----VNAQDKFGKTAFDISIDNGNE 81
Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIK 94
G TPLH+AA+ H +VEVL+K
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLK 56
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 125 LHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAED 171
LH AV+ A + S+ +V I++N D + DG T LH A + N D
Sbjct: 175 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPD 221
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 58/136 (42%), Gaps = 24/136 (17%)
Query: 37 LHVNIASQQEGERVSTEFVEGILEMCPSLLLQVNDKGD------TPLHVAAKCRHPAVVE 90
L VN+ SQ + + G ++ P LL + G PLH+A + H VV+
Sbjct: 77 LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVK 136
Query: 91 VLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSA 150
L+ K +++ SG NT L + + + G E+VA +L++ S
Sbjct: 137 CLLDSNAKPNKKDLSG---------------NTPL---IYACSGGHHELVALLLQHGASI 178
Query: 151 DHRGPDGLTTLHAAVI 166
+ G T LH AVI
Sbjct: 179 NASNNKGNTALHEAVI 194
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRR 246
R+ LH A GH + +L S K+D G T L A S G+ +V
Sbjct: 115 RNADQAVPLHLACQQGHFQVVKCLLDSNAKP----NKKDLSGNTPLIYACSGGHHELVAL 170
Query: 247 IIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRDKNG 298
+++H S + +N+G A H A++ V++ LL + + +++ R +
Sbjct: 171 LLQH-GASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTA 221
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICN 168
N+E TALH AV + V+ + + N +AD DG T LH A CN
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS---DGWTPLHCAASCN 114
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 225 DDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
+D G+TALH A G+ +V+ +++ + + D+ GW H A V K L+E+
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
+ S+ +G ++V I+ +G+T LH AV C D
Sbjct: 42 LDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAV-CAGHTEIVKFLVQFGVNVNAAD 100
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKS 213
GWT LH AA + + +++S
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 118 NEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICN 168
N+E TALH AV + V+ + + N +AD DG T LH A CN
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS---DGWTPLHCAASCN 114
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 225 DDRGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARHFAMVSLRGGVLKSLLEN 284
+D G+TALH A G+ +V+ +++ + + D+ GW H A V K L+E+
Sbjct: 67 NDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNNVQVCKFLVES 125
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 129 VQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERD 188
+ S+ +G ++V I+ +G+T LH AV C D
Sbjct: 42 LDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAV-CAGHTEIVKFLVQFGVNVNAAD 100
Query: 189 RHGWTSLHHAAYLGHSNITSMMLKS 213
GWT LH AA + + +++S
Sbjct: 101 SDGWTPLHCAASCNNVQVCKFLVES 125
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 125 LHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAEDV 172
LH AV+ A + S+ +V I++N D + DG T LH A + N D
Sbjct: 194 LHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDC 241
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCP 252
T LH AA ++ +L+ D ++ +D G+ LH A S G+ V +++H
Sbjct: 44 TPLHFAAGYNRVSVVEYLLQHGAD----VHAKDKGGLVPLHNACSYGHYEVAELLVKH-G 98
Query: 253 ESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRD-----KNGNTPLHVL 305
++ D + H A + + K LL+ HG D ++GNTPL ++
Sbjct: 99 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQ--------HGADPTKKNRDGNTPLDLV 148
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVA-LYKEDDRGMTALHLAASQGYERVVR 245
+D+ G LH+A GH + +++K VA L+K T LH AA++G + +
Sbjct: 71 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK-----FTPLHEAAAKGKYEICK 125
Query: 246 RIIRH 250
+++H
Sbjct: 126 LLLQH 130
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 18/118 (15%)
Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHCP 252
T LH AA ++ +L+ D ++ +D G+ LH A S G+ V +++H
Sbjct: 46 TPLHFAAGYNRVSVVEYLLQHGAD----VHAKDKGGLVPLHNACSYGHYEVAELLVKH-G 100
Query: 253 ESYSIVDNRGWNARHFAMVSLRGGVLKSLLENPYVISLIHGRD-----KNGNTPLHVL 305
++ D + H A + + K LL+ HG D ++GNTPL ++
Sbjct: 101 AVVNVADLWKFTPLHEAAAKGKYEICKLLLQ--------HGADPTKKNRDGNTPLDLV 150
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVA-LYKEDDRGMTALHLAASQGYERVVR 245
+D+ G LH+A GH + +++K VA L+K T LH AA++G + +
Sbjct: 73 KDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWK-----FTPLHEAAAKGKYEICK 127
Query: 246 RIIRH 250
+++H
Sbjct: 128 LLLQH 132
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 191 GWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
G T+LH+AA + + I ++ +K K+D+ G T + LAA +G VV +I+
Sbjct: 279 GRTALHYAAQVSNXPIVKYLV---GEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQ 335
Query: 251 CPESYSIVDNRGWNARHFAMVS 272
S VD AR A +
Sbjct: 336 GA-SVEAVDATDHTARQLAQAN 356
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 148 PSADHRGPD-GLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGWTSLHHAAYLGHSNI 206
P H G D G L AA ++V + D++G T LH AA GH +
Sbjct: 15 PRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAK--DKNGSTPLHLAARNGHLEV 72
Query: 207 TSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
++L++ D + +D G TA ++ G E
Sbjct: 73 VKLLLEAGAD----VXAQDKFGKTAFDISIDNGNE 103
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 106 GVDWIRWMLLVENEEKN-TALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAA 164
GVD + L E + TALH AV+S + S+ +V +++N + D + G T LH
Sbjct: 153 GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC 212
Query: 165 VIC-NAE 170
+ NAE
Sbjct: 213 CLTDNAE 219
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 70 NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
N+ TPLH+A P + E L L +G D + + NT LH A
Sbjct: 39 NNLQQTPLHLAVITNQPEIAEAL----------LGAGCDPE-----LRDFRGNTPLHLAC 83
Query: 130 QSAAKGSVEMVAEILENCPSA------DHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXX 183
+ +G + V + ++C + +G T LH A I +
Sbjct: 84 E---QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 140
Query: 184 TRERDRHGWTSLHHAAYLGHSNITSMMLKSEDD 216
+ +G T+LH A L + ++ S++LK D
Sbjct: 141 NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 173
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 17/114 (14%)
Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHC- 251
T LH A I +L + D + D RG T LHLA QG V + + C
Sbjct: 44 TPLHLAVITNQPEIAEALLGAGCDPEL----RDFRGNTPLHLACEQGCLASVGVLTQSCT 99
Query: 252 -PESYSIVDNRGWNAR---HFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTP 301
P +SI+ +N H A + G+++ L +SL G D N P
Sbjct: 100 TPHLHSILKATNYNGHTCLHLASIHGYLGIVELL------VSL--GADVNAQEP 145
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 12/112 (10%)
Query: 227 RGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNARH------------FAMVSLR 274
RG +ALH+A + + V+ ++ + ++ R + A + +
Sbjct: 94 RGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFFQKGQGTCFYFGELPLSLAACTKQ 153
Query: 275 GGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAACRDSSYFIVPDSDMYEAV 326
V+ LLENP+ + + D GNT LH L +S+ I + Y+ +
Sbjct: 154 WDVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTSXYDGL 205
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 16/112 (14%)
Query: 227 RGMTALHLAASQGYERVVRRIIRHCPESYSIVDNRGWNAR------HFAMVSL------- 273
RG TALH+A + + V ++ + ++ R + + +F + L
Sbjct: 90 RGQTALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN 149
Query: 274 RGGVLKSLLENPYVISLIHGRDKNGNTPLHVLAAAC---RDSSYFIVPDSDM 322
+ ++ L ENP+ + + +D GNT LH L A R+++ F+ D+
Sbjct: 150 QPHIVNYLTENPHKKADMRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDL 201
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 46/114 (40%), Gaps = 17/114 (14%)
Query: 193 TSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHC- 251
T LH A I +L + D + D RG T LHLA QG V + + C
Sbjct: 47 TPLHLAVITNQPEIAEALLGAGCDPEL----RDFRGNTPLHLACEQGCLASVGVLTQSCT 102
Query: 252 -PESYSIVDNRGWNAR---HFAMVSLRGGVLKSLLENPYVISLIHGRDKNGNTP 301
P +SI+ +N H A + G+++ L +SL G D N P
Sbjct: 103 TPHLHSILKATNYNGHTCLHLASIHGYLGIVELL------VSL--GADVNAQEP 148
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 59/153 (38%), Gaps = 24/153 (15%)
Query: 70 NDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAV 129
N+ TPLH+A P + E L L +G D + + NT LH A
Sbjct: 42 NNLQQTPLHLAVITNQPEIAEAL----------LGAGCDPE-----LRDFRGNTPLHLAC 86
Query: 130 QSAAKGSVEMVAEILENCPSA------DHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXX 183
+ +G + V + ++C + +G T LH A I +
Sbjct: 87 E---QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 143
Query: 184 TRERDRHGWTSLHHAAYLGHSNITSMMLKSEDD 216
+ +G T+LH A L + ++ S++LK D
Sbjct: 144 NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD 176
>pdb|3E9K|A Chain A, Crystal Structure Of Homo Sapiens
Kynureninase-3-Hydroxyhippuric Acid Inhibitor Complex
Length = 465
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 268 FAMVSLRGGVLKSLLENPYVISLI---HGRDK--------NGNTPLHVLAAACRDSSYFI 316
F +++ KS+L Y+ LI +G+DK N TP HV C+ + F
Sbjct: 349 FKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS 408
Query: 317 VPDSDMYEAVNKQ 329
VP+ D+++ + K+
Sbjct: 409 VPNKDVFQELEKR 421
>pdb|2HZP|A Chain A, Crystal Structure Of Homo Sapiens Kynureninase
Length = 501
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 11/74 (14%)
Query: 268 FAMVSLRGGVLKSLLENPYVISLI---HGRDK--------NGNTPLHVLAAACRDSSYFI 316
F +++ KS+L Y+ LI +G+DK N TP HV C+ + F
Sbjct: 385 FKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFS 444
Query: 317 VPDSDMYEAVNKQN 330
VP+ D+++ + K+
Sbjct: 445 VPNKDVFQELEKRG 458
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 54/118 (45%), Gaps = 27/118 (22%)
Query: 63 PSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSREL--ESGVDWIRW-------- 112
PSL ++ +G + +H+AA+ H ++V LI AK Q ++ ++G+ + W
Sbjct: 102 PSL---IDGEGCSCIHLAAQFGHTSIVAYLI--AKGQDVDMMDQNGMTPLMWAAYRTHSV 156
Query: 113 ----MLLVEN--------EEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGL 158
+LL N KNTALH AV + + ++ E N + + +G L
Sbjct: 157 DPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESAL 214
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLA 235
+ D G LHHA LGH+ + + LK D L D G L +A
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGAD----LGARDSEGRDPLTIA 308
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLA 235
+ D G LHHA LGH+ + + LK D L D G L +A
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGAD----LGARDSEGRDPLTIA 308
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Query: 187 RDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYE 241
+D++G T LH AA GH + ++L++ D + +D G TA ++ G E
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEAGAD----VNAQDKFGKTAFDISIDNGNE 85
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 227 RGMTALHLAASQGYERVVRRIIRHCPESYSIVD------NRGWNARHFAMVSL------- 273
+G TALH+A + +V ++ + + + + +G +F + L
Sbjct: 100 KGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN 159
Query: 274 RGGVLKSLLENPYVISLIHGRDKNGNTPLHVL 305
+ ++K LL+N + + I RD GNT LH L
Sbjct: 160 QLAIVKFLLQNSWQPADISARDSVGNTVLHAL 191
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 83/205 (40%), Gaps = 30/205 (14%)
Query: 83 CR---HPAVVEV-LIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSAAKGSVE 138
CR HP +V L+ F +R L+ +++ + + NTALH +V A +
Sbjct: 76 CRSDAHPELVRRHLVTFRAMSARLLD-------YVVNIADSNGNTALHYSVSHA---NFP 125
Query: 139 MVAEILEN--CPSADHR----GPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRER-DRHG 191
+V ++L++ C P LT L A + +D+ + + G
Sbjct: 126 VVQQLLDSGVCKVDKQNRAGYSPIMLTAL--ATLKTQDDIETVLQLFRLGNINAKASQAG 183
Query: 192 WTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRHC 251
T+L A G ++ +L E D V +DD G TAL A G++ + ++
Sbjct: 184 QTALMLAVSHGRVDVVKALLACEADVNV----QDDDGSTALMCACEHGHKEIAGLLLAVP 239
Query: 252 PESYSIVDNRGWNARHFAMVSLRGG 276
S+ D G A MV+L G
Sbjct: 240 SCDISLTDRDGSTA---LMVALDAG 261
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLA 235
+ D G LHHA LGH+ + + LK D L D G L +A
Sbjct: 263 QADSAGRGPLHHATILGHTGLACLFLKRGAD----LGARDSEGRDPLTIA 308
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 91/223 (40%), Gaps = 60/223 (26%)
Query: 52 TEFVEGILEMCPSLLLQVNDKGDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIR 111
T+ V+ IL+ + +V+ +G+TPL++A + + LI + G D
Sbjct: 18 TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI----------DRGADI-- 65
Query: 112 WMLLVENEEKNTALHEAVQSAAKGSVEMVAEILENCPSADHRGPDGLTTLHAAVICNAED 171
N + + + + + A+G E++A +L+ H PD
Sbjct: 66 ------NLQNSISDSPYLYAGAQGRTEILAYMLK------HATPD--------------- 98
Query: 172 VXXXXXXXXXXXTRERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTA 231
+ +R+G +L AA GH + ++L+ + I ++D G TA
Sbjct: 99 ------------LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF---QNDFGYTA 143
Query: 232 LHLA-----ASQGYERVVRRIIRHCPESYSIVDNRGWNARHFA 269
L A +Q Y+ +V+ ++ + + SI DN G A +A
Sbjct: 144 LIEAVGLREGNQLYQDIVKLLMENGADQ-SIKDNSGRTAMDYA 185
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 28.9 bits (63), Expect = 4.6, Method: Composition-based stats.
Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 18/91 (19%)
Query: 73 GDTPLHVAAKCRHPAVVEVLIKFAKKQSRELESGVDWIRWMLLVENEEKNTALHEAVQSA 132
G PLH AA C ++E L L G D + ++ T L AV
Sbjct: 35 GRKPLHYAADCGQLEILEFL----------LLKGAD-----INAPDKHHITPLLSAVY-- 77
Query: 133 AKGSVEMVAEILENCPSADHRGPDGLTTLHA 163
+G V V +L +GPDGLT L A
Sbjct: 78 -EGHVSCVKLLLSKGADKTVKGPDGLTALEA 107
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
Query: 143 ILENCPSADHRGPDGLTTLHAAVICNAEDVXXXXXXXXXXXTRERDRHGWTSLHHAAYLG 202
+L+ A+ + G T LHAAV +A V R G T L AA L
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 203 HSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVRRIIRH 250
+ ++ ++ D + D+ G TALH AA+ V ++ H
Sbjct: 130 IEGMVEDLITADAD----INAADNSGKTALHWAAAVNNTEAVNILLMH 173
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 186 ERDRHGWTSLHHAAYLGHSNITSMMLKSEDDKIVALYKEDDRGMTALHLAASQGYERVVR 245
E +++G+ + H A GH++ S + S+++ A+ D+ + L Y +
Sbjct: 58 EEEQNGYFGIPHKALTGHNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRTGTTY----K 112
Query: 246 RIIRHCPESYSIV---DNR 261
R + H E YS+ DNR
Sbjct: 113 RFVGHQSEVYSVAFSPDNR 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,237,575
Number of Sequences: 62578
Number of extensions: 390684
Number of successful extensions: 1611
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 970
Number of HSP's gapped (non-prelim): 398
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)