BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037703
         (478 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 131/322 (40%), Gaps = 31/322 (9%)

Query: 159 MGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILCW 218
           M  + A++++   +   +I A+  Y   Q L  +    SL  P ++     +  +I L W
Sbjct: 119 MDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNW 178

Query: 219 ALVL-KF---ELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIK-- 272
             V  KF   EL  +G  +A    YW+ +LLL  Y+  S   A  +V    E F   +  
Sbjct: 179 IFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKV---FETFHKPQPK 235

Query: 273 ---EFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGL 329
                F L  P A  +  E   F  + LL   L +  + A  +++  +++  +F  P  +
Sbjct: 236 ELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMF--PMSI 293

Query: 330 GAAASTRVSNALGAGNPQAAIIAVRAXXXXXXXXXXXXSSILYASRHVFGYIFSNDQEVV 389
           GAA S RV + LG  + + A IA               + +    R     +++ +Q VV
Sbjct: 294 GAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVV 353

Query: 390 DYVTSMAPLICLCVILNGLQAVLSEGGSQNLGAYANLTAYYH--------FGIPVAAALG 441
                +     +   ++ +Q V     + +L  Y ++TA +H         G+P    LG
Sbjct: 354 ALAMQLLLFAAIYQCMDAVQVV----AAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILG 409

Query: 442 F--WL---KMRGEGLWIGIQVG 458
              WL    +  +G W+G  +G
Sbjct: 410 MTNWLTEQPLGAKGFWLGFIIG 431


>pdb|3ZU2|A Chain A, Structure Of The Enoyl-Acp Reductase Fabv From Yersinia
           Pestis With The Cofactor Nadh (Siras)
          Length = 422

 Score = 30.0 bits (66), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 9/67 (13%)

Query: 383 SNDQEVVDYVTSMAPLICLCVILNGLQAVLSEGGSQNLGAYANLTAYYHFGIPVAAALGF 442
           +N ++ +DYVT+  P      I NG + VL  G S   G  A +TA +  G   A  LG 
Sbjct: 45  ANVKKQIDYVTTEGP------IANGPKRVLVIGASTGYGLAARITAAFGCG---ADTLGV 95

Query: 443 WLKMRGE 449
           + +  GE
Sbjct: 96  FFERPGE 102


>pdb|3ZU3|A Chain A, Structure Of The Enoyl-Acp Reductase Fabv From Yersinia
           Pestis With The Cofactor Nadh (Mr, Cleaved Histag)
 pdb|3ZU4|A Chain A, Structure Of The Enoyl-Acp Reductase Fabv From Yersinia
           Pestis With The Cofactor Nadh And The 2-Pyridone
           Inhibitor Pt172
 pdb|3ZU5|A Chain A, Structure Of The Enoyl-Acp Reductase Fabv From Yersinia
           Pestis With The Cofactor Nadh And The 2-Pyridone
           Inhibitor Pt173
          Length = 405

 Score = 29.6 bits (65), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 9/67 (13%)

Query: 383 SNDQEVVDYVTSMAPLICLCVILNGLQAVLSEGGSQNLGAYANLTAYYHFGIPVAAALGF 442
           +N ++ +DYVT+  P      I NG + VL  G S   G  A +TA +  G   A  LG 
Sbjct: 28  ANVKKQIDYVTTEGP------IANGPKRVLVIGASTGYGLAARITAAFGCG---ADTLGV 78

Query: 443 WLKMRGE 449
           + +  GE
Sbjct: 79  FFERPGE 85


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,570,903
Number of Sequences: 62578
Number of extensions: 398490
Number of successful extensions: 859
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 853
Number of HSP's gapped (non-prelim): 9
length of query: 478
length of database: 14,973,337
effective HSP length: 103
effective length of query: 375
effective length of database: 8,527,803
effective search space: 3197926125
effective search space used: 3197926125
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (25.0 bits)