Query 037703
Match_columns 478
No_of_seqs 196 out of 1913
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 03:36:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037703.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037703hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 8.4E-58 1.8E-62 455.2 54.4 429 40-478 12-448 (455)
2 PRK10189 MATE family multidrug 100.0 2.8E-53 6.1E-58 426.6 56.1 427 42-477 26-466 (478)
3 PRK00187 multidrug efflux prot 100.0 2.7E-52 5.9E-57 419.4 54.3 423 41-472 6-443 (464)
4 PRK10367 DNA-damage-inducible 100.0 1.9E-51 4.2E-56 409.6 51.6 419 42-477 6-434 (441)
5 PRK01766 multidrug efflux prot 100.0 6.2E-51 1.3E-55 410.8 54.1 432 37-477 4-446 (456)
6 PRK09575 vmrA multidrug efflux 100.0 1.7E-49 3.7E-54 398.6 52.4 421 41-472 8-435 (453)
7 KOG1347 Uncharacterized membra 100.0 2.2E-40 4.7E-45 327.2 31.7 430 41-478 24-457 (473)
8 TIGR00797 matE putative efflux 100.0 6.5E-36 1.4E-40 290.8 43.6 338 53-399 1-341 (342)
9 TIGR01695 mviN integral membra 100.0 5.8E-34 1.3E-38 291.5 52.7 408 47-473 2-428 (502)
10 TIGR02900 spore_V_B stage V sp 100.0 1.1E-33 2.3E-38 288.6 49.0 411 48-473 2-434 (488)
11 PRK15099 O-antigen translocase 100.0 8.8E-30 1.9E-34 253.9 47.6 402 47-474 3-413 (416)
12 PF03023 MVIN: MviN-like prote 100.0 3.4E-27 7.4E-32 235.7 49.7 381 75-473 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 9.4E-27 2E-31 228.4 50.8 417 44-473 6-437 (518)
14 PRK10459 colanic acid exporter 99.9 2.7E-21 5.8E-26 197.4 46.6 393 45-472 5-404 (492)
15 COG2244 RfbX Membrane protein 99.9 4.4E-20 9.6E-25 187.9 41.6 401 43-470 4-408 (480)
16 PRK00187 multidrug efflux prot 99.9 2.2E-21 4.7E-26 195.5 26.9 207 40-253 231-444 (464)
17 PRK10189 MATE family multidrug 99.9 1.7E-20 3.7E-25 189.2 27.8 200 269-471 26-235 (478)
18 PRK01766 multidrug efflux prot 99.9 1.4E-20 3E-25 190.0 26.2 207 41-254 235-443 (456)
19 PRK10367 DNA-damage-inducible 99.9 7.1E-20 1.5E-24 182.9 27.7 203 268-472 5-211 (441)
20 COG0534 NorM Na+-driven multid 99.9 1.2E-19 2.6E-24 181.3 26.7 211 38-256 234-446 (455)
21 PRK09575 vmrA multidrug efflux 99.9 1.5E-19 3.2E-24 181.9 27.0 204 40-252 229-435 (453)
22 TIGR01695 mviN integral membra 99.8 7.9E-18 1.7E-22 172.4 29.0 205 41-253 219-428 (502)
23 PF03023 MVIN: MviN-like prote 99.8 1.9E-15 4.1E-20 151.3 30.9 206 41-254 194-404 (451)
24 TIGR02900 spore_V_B stage V sp 99.7 1.1E-15 2.3E-20 156.2 25.6 202 41-253 221-434 (488)
25 TIGR00797 matE putative efflux 99.7 2.3E-15 5.1E-20 146.3 25.9 190 280-472 1-196 (342)
26 PF01554 MatE: MatE; InterPro 99.7 5E-18 1.1E-22 146.3 5.1 160 53-219 1-162 (162)
27 PF01554 MatE: MatE; InterPro 99.7 3.4E-17 7.4E-22 141.1 9.7 158 280-439 1-162 (162)
28 COG0728 MviN Uncharacterized m 99.7 7.9E-14 1.7E-18 137.7 34.1 233 41-288 228-465 (518)
29 PRK10459 colanic acid exporter 99.7 1.9E-13 4.2E-18 139.6 34.5 200 41-252 203-404 (492)
30 PRK15099 O-antigen translocase 99.7 1.6E-14 3.6E-19 144.1 25.3 199 41-252 211-411 (416)
31 PF01943 Polysacc_synt: Polysa 99.7 4.6E-13 1E-17 125.6 33.6 271 48-341 2-273 (273)
32 COG2244 RfbX Membrane protein 99.6 8E-13 1.7E-17 134.7 26.7 187 40-238 208-396 (480)
33 PF13440 Polysacc_synt_3: Poly 99.4 5.2E-10 1.1E-14 103.5 31.2 245 64-339 3-250 (251)
34 KOG1347 Uncharacterized membra 99.2 2.7E-09 5.9E-14 106.4 20.5 202 268-473 24-230 (473)
35 PF04506 Rft-1: Rft protein; 98.9 9.3E-06 2E-10 82.5 32.5 198 272-472 253-469 (549)
36 PF07260 ANKH: Progressive ank 98.8 1.3E-05 2.9E-10 73.1 28.5 313 42-372 8-343 (345)
37 PF04506 Rft-1: Rft protein; 98.6 5.2E-06 1.1E-10 84.3 20.9 208 44-254 252-471 (549)
38 KOG2864 Nuclear division RFT1 98.5 0.0011 2.4E-08 63.7 35.3 407 44-472 7-448 (530)
39 PF14667 Polysacc_synt_C: Poly 98.5 2.5E-05 5.5E-10 65.5 17.7 80 173-254 2-81 (146)
40 KOG2864 Nuclear division RFT1 98.1 0.00014 3E-09 69.7 16.3 205 45-254 239-450 (530)
41 PF01943 Polysacc_synt: Polysa 97.8 0.0085 1.8E-07 55.7 22.8 180 282-472 9-190 (273)
42 PF13440 Polysacc_synt_3: Poly 97.5 0.054 1.2E-06 49.6 22.6 166 292-471 5-171 (251)
43 PF14667 Polysacc_synt_C: Poly 97.1 0.0036 7.9E-08 52.3 8.7 64 407-473 17-80 (146)
44 PF07260 ANKH: Progressive ank 96.8 0.45 9.8E-06 44.3 22.1 151 269-425 8-162 (345)
45 COG4267 Predicted membrane pro 95.3 2.9 6.2E-05 40.0 33.3 138 95-253 74-211 (467)
46 COG4267 Predicted membrane pro 73.2 94 0.002 30.2 21.5 145 313-472 63-210 (467)
47 PF04505 Dispanin: Interferon- 48.3 1.1E+02 0.0023 22.5 6.9 38 329-366 36-73 (82)
48 TIGR00383 corA magnesium Mg(2+ 41.0 1.5E+02 0.0032 28.2 8.4 54 419-475 256-317 (318)
49 PF14248 DUF4345: Domain of un 40.3 1.9E+02 0.0041 23.0 13.8 120 351-472 2-123 (124)
50 PRK09546 zntB zinc transporter 35.6 1.1E+02 0.0023 29.4 6.4 43 432-475 273-323 (324)
51 KOG3966 p53-mediated apoptosis 33.5 74 0.0016 29.1 4.4 23 5-27 53-75 (360)
52 PF14184 YrvL: Regulatory prot 33.4 2.6E+02 0.0057 22.7 12.7 101 134-236 7-108 (132)
53 TIGR02848 spore_III_AC stage I 30.9 1.8E+02 0.004 20.1 5.0 35 394-428 5-39 (64)
54 PF01102 Glycophorin_A: Glycop 30.8 77 0.0017 25.4 3.7 28 448-475 66-93 (122)
55 PF03904 DUF334: Domain of unk 29.7 2.9E+02 0.0062 24.7 7.3 40 123-162 142-181 (230)
56 PRK11085 magnesium/nickel/coba 29.0 3.1E+02 0.0067 26.2 8.2 53 420-475 255-315 (316)
57 COG0598 CorA Mg2+ and Co2+ tra 28.6 1.9E+02 0.0041 27.6 6.8 52 421-475 262-321 (322)
58 PF02487 CLN3: CLN3 protein; 28.4 1.5E+02 0.0032 29.4 6.1 31 35-65 233-263 (402)
59 TIGR01478 STEVOR variant surfa 25.3 92 0.002 28.8 3.7 31 448-478 260-293 (295)
60 PF06800 Sugar_transport: Suga 22.3 6.4E+02 0.014 23.4 10.7 45 206-252 198-242 (269)
61 COG4536 CorB Putative Mg2+ and 21.9 4.2E+02 0.0092 25.9 7.4 96 50-162 59-156 (423)
62 PF05313 Pox_P21: Poxvirus P21 20.6 3.6E+02 0.0077 23.2 6.0 27 228-254 136-162 (189)
63 TIGR00765 yihY_not_rbn YihY fa 20.2 6.7E+02 0.015 22.9 21.8 12 105-116 101-112 (259)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=8.4e-58 Score=455.15 Aligned_cols=429 Identities=23% Similarity=0.309 Sum_probs=406.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCc
Q 037703 40 YIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARP 119 (478)
Q Consensus 40 ~~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~ 119 (478)
.++..|+++++++|++++++.+.+++++|+.++||+|++++|+.++++++..++ ..+..|++ .+.++.++|++|
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~--~g~~~liaq~~G--- 85 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLG--TGTTVLVAQAIG--- 85 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHH--HhHHHHHHHHHc---
Confidence 467899999999999999999999999999999999999999999999999986 89999999 999999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCc
Q 037703 120 ISQQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSL 198 (478)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~ 198 (478)
+||++++++..++++.++..++++.+++ ++++++++.+++.++|+.+.+.+|+++..++.|+..+...+.+.+|+.|+
T Consensus 86 -a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~ 164 (455)
T COG0534 86 -AGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGD 164 (455)
T ss_pred -CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999888887 99999999999998889999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh-cC-CCcchhHHHHHHHHHHHHHHHHHHHHhcccc-hhhcccccHHHHHhHHHHH
Q 037703 199 VTPMLISSCATVFFHIILCWALVLK-FE-LNNIGAALAIGTSYWLNVLLLGLYMTFSSAC-AQTRVQVSMELFQGIKEFF 275 (478)
Q Consensus 199 ~~~~~~~~i~~~~~~i~l~~~li~~-~~-~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 275 (478)
++.+++.++++.++|+++|++|+++ .+ +|+.|+|+||.+++++..++..++++++++. ...+.+..+.+++.+|+++
T Consensus 165 ~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 244 (455)
T COG0534 165 TKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEIL 244 (455)
T ss_pred CchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHH
Confidence 9999999999999999999999998 57 9999999999999999999999999887752 2222344456678899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 037703 276 LLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRA 355 (478)
Q Consensus 276 ~~~lp~~~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~ 355 (478)
++|+|.++++......+...+.+++++|+ .++|+|+++.++.++.++++.|++++.++++++++|+||+|++++..+.
T Consensus 245 ~lG~p~~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~ 322 (455)
T COG0534 245 RLGLPIFLESLSESLGFLLLTLFVARLGT--VALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARL 322 (455)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999998 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccCcchhhHHHHHHHHHH
Q 037703 356 VLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQ----AVLSEGGSQNLGAYANLTAYYH 431 (478)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~----~~l~~~g~~~~~~~~~~~~~~~ 431 (478)
+.++++.+++..+++++.+++++..+|++|+|+.+.+..++++....+++++++ +.+||.||+|.++..+++++|+
T Consensus 323 ~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~ 402 (455)
T COG0534 323 ALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWG 402 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999874 6788899999999999999999
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 037703 432 FGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQNWKKQ 478 (478)
Q Consensus 432 v~i~~~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~~~w~~~ 478 (478)
+.+|+.+++.+.. +|..|+|++..+++.+..+...+++++.+|+++
T Consensus 403 ~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (455)
T COG0534 403 FRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRK 448 (455)
T ss_pred HHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999876 899999999999999999999999999999864
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=2.8e-53 Score=426.59 Aligned_cols=427 Identities=15% Similarity=0.162 Sum_probs=392.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcCc
Q 037703 42 DEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPIS 121 (478)
Q Consensus 42 ~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~~ 121 (478)
+..|+++++++|.+++++...+.+.+|+.++|++|++++|+++++.++..+. +.+..|++ .+.+++++|++| +
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~--~g~~~lvsq~~G----a 98 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAID--LGTTVVVAFSLG----K 98 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHhc----C
Confidence 5689999999999999999999999999999999999999999999999885 88899999 999999999999 9
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC--CChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCc
Q 037703 122 QQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMG--QDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSL 198 (478)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~ 198 (478)
||+|++++..+.++.+...++++.+++ ++++++++.++. .|+|+.+.+.+|+++..++.|+..+.....+++|+.++
T Consensus 99 ~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~ 178 (478)
T PRK10189 99 RDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGN 178 (478)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999998887 888999999994 79999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh----cCCCcchhHHHHHHHHHHHHHHHHHHHHhccc--chhhccc-ccHHHHHhH
Q 037703 199 VTPMLISSCATVFFHIILCWALVLK----FELNNIGAALAIGTSYWLNVLLLGLYMTFSSA--CAQTRVQ-VSMELFQGI 271 (478)
Q Consensus 199 ~~~~~~~~i~~~~~~i~l~~~li~~----~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~ 271 (478)
++.+++.+++..++|++++++++++ +++|+.|+++|+.+++++..++..+++.++.+ .+..+.+ +.+.+++.+
T Consensus 179 ~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (478)
T PRK10189 179 TKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAII 258 (478)
T ss_pred hHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHH
Confidence 9999999999999999999999975 47999999999999999998887666654321 1111111 122356789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHH
Q 037703 272 KEFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAII 351 (478)
Q Consensus 272 ~~~~~~~lp~~~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~ 351 (478)
|+++++|+|.+++.........+.+.+++++|+ .++|+|+++.++.++.++++.|++++.++++||++|+||.+++++
T Consensus 259 ~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~--~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~ 336 (478)
T PRK10189 259 WEVMGIGIPASIESVLFNGGKLLTQMFVAGMGT--SVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAER 336 (478)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999988888888888899998 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccCcchhhHHHHHH
Q 037703 352 AVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQ----AVLSEGGSQNLGAYANLT 427 (478)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~----~~l~~~g~~~~~~~~~~~ 427 (478)
..+.+.++++++++..+++++++++++..+|++|+|+.+.+..++++.....++++++ +.++|.||+++++.+++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~ 416 (478)
T PRK10189 337 QLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSML 416 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998874 568889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 037703 428 AYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQNWKK 477 (478)
Q Consensus 428 ~~~~v~i~~~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~~~w~~ 477 (478)
+.|++.+|+.+++.+..++|+.|+|++..+++.+..+++++++++++|++
T Consensus 417 ~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 417 GMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 99999999999998888899999999999999999999999999999987
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=2.7e-52 Score=419.45 Aligned_cols=423 Identities=22% Similarity=0.292 Sum_probs=384.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcC
Q 037703 41 IDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPI 120 (478)
Q Consensus 41 ~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~ 120 (478)
++..|+++++++|.+++++.+.+.+.+|+.+++++|++++++++++.++.++. ..+..|++ .+.++.++|++|
T Consensus 6 ~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~--~~~~~i~aq~~G---- 78 (464)
T PRK00187 6 TTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVI--AAVGTLVAIRHG---- 78 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHhc----
Confidence 46799999999999999999999999999999999999999999999999986 78889999 999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCchh
Q 037703 121 SQQYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVT 200 (478)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~ 200 (478)
+||+|++++..+.++.+...++++..++..+.++++++++.|+|+.+.+.+|+++..++.|+..+....++++|+.|+++
T Consensus 79 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~ 158 (464)
T PRK00187 79 AGDIEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAG 158 (464)
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcH
Confidence 99999999999999999999999887775578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----cCCCcchhHHHHHHHHHHHHHHHHHHHHhcccchhh--cccccHHHHHhHHHH
Q 037703 201 PMLISSCATVFFHIILCWALVLK----FELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQT--RVQVSMELFQGIKEF 274 (478)
Q Consensus 201 ~~~~~~i~~~~~~i~l~~~li~~----~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 274 (478)
++++.++++.++|+++|++|+++ +++|+.|+++|+.+++....+...+++++++++++. +.+..+.+++.+|++
T Consensus 159 ~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i 238 (464)
T PRK00187 159 PVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALREL 238 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHH
Confidence 99999999999999999999976 369999999999999988887776666654332221 122223456778999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 037703 275 FLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVR 354 (478)
Q Consensus 275 ~~~~lp~~~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~ 354 (478)
++.++|.++++..+.....+++.+++++|+ .++|++++++++..+.++++.|++++..+++||++|+||+|++++..+
T Consensus 239 l~lg~P~~~~~~~~~~~~~i~~~~i~~~G~--~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~ 316 (464)
T PRK00187 239 WRLGLPIGGTYAVEVGLFTFAALCMGALGS--TQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGR 316 (464)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999999999999998 467899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHhhcCC--cH---HHHHHHHHHHHHHHHHHHHHHHH----HHHhccCcchhhHHHH
Q 037703 355 AVLFLTVLETVVVSSILYASRHVFGYIFSN--DQ---EVVDYVTSMAPLICLCVILNGLQ----AVLSEGGSQNLGAYAN 425 (478)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~--~~---~~~~~~~~~l~i~~~~~~~~~~~----~~l~~~g~~~~~~~~~ 425 (478)
.++.++++++++.+++++++++++.++|++ |+ |+.+.+..++++...+.++++++ ++++|.||+|++++++
T Consensus 317 ~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~ 396 (464)
T PRK00187 317 VGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIG 396 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHH
Confidence 999999999999999999999999999964 44 67888888999999999888864 6678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 037703 426 LTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSC 472 (478)
Q Consensus 426 ~~~~~~v~i~~~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~ 472 (478)
+++.|++++|+.+++.+.+++|+.|+|+++.+++.+..+.+..+++.
T Consensus 397 ~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 397 LACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888999999999999999998877766543
No 4
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.9e-51 Score=409.55 Aligned_cols=419 Identities=16% Similarity=0.147 Sum_probs=370.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcC
Q 037703 42 DEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHL-GELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPI 120 (478)
Q Consensus 42 ~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~-G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~ 120 (478)
++.|+++++++|.+++++++.+++++|+.++|++ |++++|+++++.++.++. ..+..+++ .+.++++||++|
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~--~g~~~lvsq~~G---- 78 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLR--MSTTGLTAQAFG---- 78 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHhC----
Confidence 5589999999999999999999999999999999 778999999999999986 88888999 999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCch
Q 037703 121 SQQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLV 199 (478)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~ 199 (478)
+||+|++++..++++.+..+++++..++ ..+.++++.+++.|+|+.+.+.+|+++..++.|+..+..++.+++|+.+++
T Consensus 79 a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~ 158 (441)
T PRK10367 79 AKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYA 158 (441)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 9999999999999999999999998887 888899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcccchhhcccccHHH-HHhHHHHHHHH
Q 037703 200 TPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMEL-FQGIKEFFLLA 278 (478)
Q Consensus 200 ~~~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 278 (478)
+++++.++++.++|+++|+++++++++|+.|+++||.+++++.+++..++++++++.++.+.+..+.+ ++.+|++++++
T Consensus 159 ~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig 238 (441)
T PRK10367 159 RAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALN 238 (441)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhC
Confidence 99999999999999999999999889999999999999999998888777765432211111111112 24689999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 037703 279 IPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRAVLF 358 (478)
Q Consensus 279 lp~~~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~ 358 (478)
.|.++++......+.+.+.+++++|+ .++|+|+++.++.++.++++.|++++.+|++||++|+||++++|+..+.+.+
T Consensus 239 ~P~~~~~~~~~~~~~~~~~~~~~~G~--~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~ 316 (441)
T PRK10367 239 RDIMLRSLLLQLCFGAITVLGARLGS--DIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACR 316 (441)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998 4689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHhccC---cchhhHHHHHHHHHH
Q 037703 359 LTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILN----GLQAVLSEGG---SQNLGAYANLTAYYH 431 (478)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~----~~~~~l~~~g---~~~~~~~~~~~~~~~ 431 (478)
++++++...+++++++++++..+|++|+|+.+.+..++++.....+.. ....+++|.+ |+|.++.+++++.|+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~ 396 (441)
T PRK10367 317 QSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFAL 396 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998876443321 1233455544 699999999999875
Q ss_pred HHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 037703 432 FGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQNWKK 477 (478)
Q Consensus 432 v~i~~~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~~~w~~ 477 (478)
+.++. +++|+.|+|++..+++.+.++++.+++++. |||
T Consensus 397 ~~~~~-------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 397 TLLTL-------PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred HHHHH-------HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 33322 246999999999999999999998877665 876
No 5
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=6.2e-51 Score=410.85 Aligned_cols=432 Identities=19% Similarity=0.280 Sum_probs=395.8
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhcc
Q 037703 37 ADVYIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIV 116 (478)
Q Consensus 37 ~~~~~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g 116 (478)
.|++++.+|+++++++|.+++++...+.+.+|+.+++++|++++++++.+.++..+. ..+..|++ .+..+.++|++|
T Consensus 4 ~~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~--~a~~~~vs~~~g 80 (456)
T PRK01766 4 TQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLL--LALTPIVAQLNG 80 (456)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHhc
Confidence 345578899999999999999999999999999999999999999999999987764 77788888 999999999999
Q ss_pred CCcCccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 037703 117 ARPISQQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQV 195 (478)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 195 (478)
++|+|+.++..+.++.+...++++.+++ +.+++++..+++.|+++.+.+.+|+++.+++.|+..+...+.+++|+
T Consensus 81 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~ 156 (456)
T PRK01766 81 ----AGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDG 156 (456)
T ss_pred ----CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887 77889999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHhh----cCCCcchhHHHHHHHHHHHHHHHHHHHHhcccchh--hcccccHHHHH
Q 037703 196 QSLVTPMLISSCATVFFHIILCWALVLK----FELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQ--TRVQVSMELFQ 269 (478)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~i~l~~~li~~----~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 269 (478)
.|+++++++.++++.++|++++++++++ +++|+.|+++++.+++++..++..++++++++.++ .+.++.+.+++
T Consensus 157 ~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (456)
T PRK01766 157 LGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWA 236 (456)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHH
Confidence 9999999999999999999999999964 46899999999999999999998888876543221 12222334567
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHH
Q 037703 270 GIKEFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAA 349 (478)
Q Consensus 270 ~~~~~~~~~lp~~~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~ 349 (478)
..|++++.++|.+++...+...+.+...+++++|+ .++|+++++.++.++.++++.|++.+.++.+||++|+||++++
T Consensus 237 ~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~ 314 (456)
T PRK01766 237 VIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGT--VTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDA 314 (456)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 78999999999999999999999999999999998 4678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccCcchhhHHHH
Q 037703 350 IIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQ----AVLSEGGSQNLGAYAN 425 (478)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~----~~l~~~g~~~~~~~~~ 425 (478)
++..+.++++++.++++.+++++.+++++.++|++|+++.+....++++..+..++++++ ++++|.||++.+++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~ 394 (456)
T PRK01766 315 RQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFIT 394 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998888764 5677799999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHccCCCC
Q 037703 426 LTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQNWKK 477 (478)
Q Consensus 426 ~~~~~~v~i~~~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~~~w~~ 477 (478)
+++.|++.+|..+++.+.+++|+.|+|+++.+++.+..+++.+++++.+||.
T Consensus 395 ~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 395 FIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888899999999999999999999999999888874
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=1.7e-49 Score=398.56 Aligned_cols=421 Identities=15% Similarity=0.124 Sum_probs=381.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCc
Q 037703 41 IDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHL-GELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARP 119 (478)
Q Consensus 41 ~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~-G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~ 119 (478)
++..|+++++++|.+++++.+.+++++|+.++|++ |+++++++++++++.++. ..+..+++ .+.+++++|++|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~--~g~~~lvsq~~G--- 81 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVG--MGTGSLLSIKRG--- 81 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHh--ccHHHHHHHHhc---
Confidence 35689999999999999999999999999999997 999999999999999885 77788888 999999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCc
Q 037703 120 ISQQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSL 198 (478)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~ 198 (478)
+||+|++++..+.++.+...++++.+++ ..++++++.+++.|+++.+.+.+|+++..++.|+..+...+.+++|+.++
T Consensus 82 -a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~ 160 (453)
T PRK09575 82 -EGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDES 160 (453)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999998887 88999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcccchhhcccccHHHHHhHHHHHHHH
Q 037703 199 VTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLA 278 (478)
Q Consensus 199 ~~~~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (478)
++.+++.++++.++|+++|+++++.+++|+.|+++|+.+++++..++..+++++++...+.+.+..+.+++.+|+++++|
T Consensus 161 ~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig 240 (453)
T PRK09575 161 PNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLG 240 (453)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhC
Confidence 99999999999999999999999888999999999999999999998887776544322222222234567789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 037703 279 IPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRAVLF 358 (478)
Q Consensus 279 lp~~~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~ 358 (478)
+|..++.........+.+.+.+++|++ .++|+++++.++..+.+++..|++++..|.+||++|+||+|++++..+.+++
T Consensus 241 ~P~~~~~~~~~~~~~~~~~~~~~~g~~-~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~ 319 (453)
T PRK09575 241 SSSFFMYLYGSFVVALHNRLFMEYGSA-LTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMK 319 (453)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 999999999888888888888888864 3679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhchhHHHhhcCC-cHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccCcchhhHHHHHHHHHHHH
Q 037703 359 LTVLETVVVSSILYASRHVFGYIFSN-DQEVVDYVTSMAPLICLCVILNGLQ----AVLSEGGSQNLGAYANLTAYYHFG 433 (478)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~i~~lf~~-~~~~~~~~~~~l~i~~~~~~~~~~~----~~l~~~g~~~~~~~~~~~~~~~v~ 433 (478)
+++..+++.+++++.+++++.++|++ |+|+.+.+..++++.....++++++ +.++|.||++.++..++.. +++.
T Consensus 320 l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~v~ 398 (453)
T PRK09575 320 VTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGN-MLIQ 398 (453)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHh-HHHH
Confidence 99999999999999999999999994 7899999999999999999998874 6678899999999999877 6789
Q ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 037703 434 IPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSC 472 (478)
Q Consensus 434 i~~~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~ 472 (478)
+|..+++... +|+.|+|+++.+++.+..++..+++++
T Consensus 399 ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 399 LPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999888643 599999999999999998888776654
No 7
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=2.2e-40 Score=327.22 Aligned_cols=430 Identities=42% Similarity=0.708 Sum_probs=411.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcC
Q 037703 41 IDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPI 120 (478)
Q Consensus 41 ~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~ 120 (478)
..+.|++.+++.|++...+.+...+.+++.++||+|+.++++.+++.+..+...+.+..|+. .+..++++|++|
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~--~aletlcgQa~g---- 97 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQ--LALDTLCGQAFG---- 97 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccc--hhhhcchHhhhc----
Confidence 68899999999999999999999999999999999999999999999999988889999999 999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCchh
Q 037703 121 SQQYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVT 200 (478)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~ 200 (478)
+++++......+++.......+++.+.++.+.++++..+++|+++...+..|.++..+..+.+........++|+++...
T Consensus 98 a~~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~ 177 (473)
T KOG1347|consen 98 AKKFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITL 177 (473)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcccchhhcccccHHHHHhHHHHHHHHHH
Q 037703 201 PMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIP 280 (478)
Q Consensus 201 ~~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 280 (478)
+..+......++|+++++++++.+++|..|++++..++++....+...|..... +...|..+... ++.++++++.++|
T Consensus 178 ~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~ 255 (473)
T KOG1347|consen 178 PLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIP 255 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999988887655 55666666666 8889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 037703 281 SAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRAVLFLT 360 (478)
Q Consensus 281 ~~~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~ 360 (478)
..++..++++.+.+..+..+.+++++.++++.++..++....++++.+++.+..+++++.+|+++++++|.....+...+
T Consensus 256 s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~ 335 (473)
T KOG1347|consen 256 SAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTS 335 (473)
T ss_pred chheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHH
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCcchhhHHHHHHHHHHHHHHH
Q 037703 361 VLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQAVLS----EGGSQNLGAYANLTAYYHFGIPV 436 (478)
Q Consensus 361 ~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~l~----~~g~~~~~~~~~~~~~~~v~i~~ 436 (478)
+..+...+..++..++.+..+|++|+++.+......++.....+.++.+.++. |.|.++...++++..++++++|+
T Consensus 336 ~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~ 415 (473)
T KOG1347|consen 336 VAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPV 415 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcc
Confidence 99999999999999999999999999999999999999999999999987766 59999999999999999999999
Q ss_pred HHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHccCCCCC
Q 037703 437 AAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQNWKKQ 478 (478)
Q Consensus 437 ~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~~~w~~~ 478 (478)
.+++.+..++|..|+|.++..+..++...+.....+.||++|
T Consensus 416 g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~ 457 (473)
T KOG1347|consen 416 GLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQ 457 (473)
T ss_pred eeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHH
Confidence 999999999999999999999999999999999999999975
No 8
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=6.5e-36 Score=290.76 Aligned_cols=338 Identities=30% Similarity=0.392 Sum_probs=307.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcCccchhHHHHHHH
Q 037703 53 PMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPISQQYRKLGTQMH 132 (478)
Q Consensus 53 p~~~~~~~~~~~~~~d~~~i~~~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~ 132 (478)
|.+++++...+.+.+|+.+++++|++++++++.+.++..+. ..+..|++ ++..|.+++++| ++|+|++++..+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~--~~~~~~~s~~~g----~~~~~~~~~~~~ 73 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLG--TATTALVAQAVG----AGNYQRLGRQAQ 73 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHH--HhHHHHHHHHHC----CCChHHHHHHHH
Confidence 78899999999999999999999999999999999998875 78888999 999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHH
Q 037703 133 TAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVF 211 (478)
Q Consensus 133 ~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 211 (478)
..+.+...++++.+++ +++++++..+++.+++..+.+.++++++.+..++..+..+..+++|+.++.+.....++++.+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~ 153 (342)
T TIGR00797 74 QSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNV 153 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 9999999999999887 888999999998788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-hcC-CCcchhHHHHHHHHHHHHHHHHHHHHhcccchhhcccccHHHHHhHHHHHHHHHHHHHHHHHHH
Q 037703 212 FHIILCWALVL-KFE-LNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIPSAFMVCLEW 289 (478)
Q Consensus 212 ~~i~l~~~li~-~~~-~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~ 289 (478)
+|+++++++++ ..+ +|+.|+++++.+++++..++..++.+++++.+..+.+..+.+++.+|++++.++|..+++...+
T Consensus 154 ~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~ 233 (342)
T TIGR00797 154 INIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILES 233 (342)
T ss_pred HHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHH
Confidence 99999999987 566 7899999999999999999888777663332222112223345678999999999999999999
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHH
Q 037703 290 WSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRAVLFLTVLETVVVSS 369 (478)
Q Consensus 290 ~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (478)
+...+++.+.+.+|+ .++++|+++.++.++..+++.+++++..|.+++++++||.+++++..++++++.+.++++.++
T Consensus 234 ~~~~~~~~i~~~~g~--~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (342)
T TIGR00797 234 LSFALLALLVARLGS--IALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAI 311 (342)
T ss_pred HHHHHHHHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987 467899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhchhHHHhhcCCcHHHHHHHHHHHHHH
Q 037703 370 ILYASRHVFGYIFSNDQEVVDYVTSMAPLI 399 (478)
Q Consensus 370 ~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~ 399 (478)
+++++++++.++|++|+++.+.+..++++.
T Consensus 312 ~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 312 ILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999988887764
No 9
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=5.8e-34 Score=291.54 Aligned_cols=408 Identities=13% Similarity=0.050 Sum_probs=336.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHh-cChhHH-HHHHHHHHHHHHHHHHHH--HhhhhhhhHHHHHHhhccCCcCcc
Q 037703 47 LGSIAGPMVAVNLSQYFLQVISVMMVGH-LGELFL-SSTAIAISFSAVTGFSLL--CFRLLYFLLQASCSYRIVARPISQ 122 (478)
Q Consensus 47 l~~~~~p~~~~~~~~~~~~~~d~~~i~~-~G~~~~-a~~~~~~~i~~~~~~~~~--~gl~~~~a~~~~vs~~~g~~~~~~ 122 (478)
+.|.+.-.+++++.+.+++++|..++++ +|++++ ++++.+.++.+.. .... .|+. ++..+...++.+ +
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~-~~~~~~~g~~--~a~i~~~~~~~~----~- 73 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFF-RRLFAEGAFN--SAFVPVFTKAKK----K- 73 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHH-HHHHHhhHHH--HHHHHHHHHHHh----h-
Confidence 5678888999999999999999999999 599999 8999999998765 3333 3566 777777665433 2
Q ss_pred chhHHHHHHHHHHHHHHHHHH-HHHHH-HHhHHHHHHHc--CCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCc
Q 037703 123 QYRKLGTQMHTAMFCLLLACL-PVSLL-WANMGKLLILM--GQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSL 198 (478)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~-~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~ 198 (478)
+|++++....+.......+. +.+++ +++++++..++ +.+++..+.+.+|+++..++.|+..+.....+++|+.++
T Consensus 74 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~ 152 (502)
T TIGR01695 74 -EKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKR 152 (502)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCe
Confidence 26777777666665554444 44555 77888888887 456777789999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhH--HHHHHHHHHHHHHHHHHHHhcccchhhcccccHHHHHhHHHHHH
Q 037703 199 VTPMLISSCATVFFHIILCWALVLKFELNNIGAA--LAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFL 276 (478)
Q Consensus 199 ~~~~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (478)
.+++.+.+++..+++++..+++. +++|..|++ +++.+++.+..++..++.+|++.+.+.+.+ .+++.+|++++
T Consensus 153 ~~~~~~~~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~k~~l~ 227 (502)
T TIGR01695 153 FFIPSFSPILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFN---FRDPGLKRFLK 227 (502)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCC---CCChhHHHHHH
Confidence 99999999988888777555554 569999988 999999999988887777654421111111 23456899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 037703 277 LAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFT-IPDGLGAAASTRVSNALGAGNPQAAIIAVRA 355 (478)
Q Consensus 277 ~~lp~~~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~-~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~ 355 (478)
.+.|..+++...+....++..+.+.+|+ .++++|+.+.++.++... +..+++++..|.+|+++|+||.+++++..++
T Consensus 228 ~~~p~~~~~~~~~~~~~id~~~~~~~~~--~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~ 305 (502)
T TIGR01695 228 LFLPTTLGSSASQITLLINTALASFLEI--GSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQ 305 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999999999888888887 357889999999998765 5689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHhhcCC----cHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccCcchhhHHHHHH
Q 037703 356 VLFLTVLETVVVSSILYASRHVFGYIFSN----DQEVVDYVTSMAPLICLCVILNGLQ----AVLSEGGSQNLGAYANLT 427 (478)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~lf~~----~~~~~~~~~~~l~i~~~~~~~~~~~----~~l~~~g~~~~~~~~~~~ 427 (478)
+.++...+++|.++++..+++++..+|.+ |+|.......++.+..+..++.+++ ..+++.||+|.+++.++.
T Consensus 306 ~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~ 385 (502)
T TIGR01695 306 GIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVI 385 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHH
Confidence 99999999999999999999999998865 5677788888998888888887764 456779999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcc
Q 037703 428 AYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQ 473 (478)
Q Consensus 428 ~~~~v~i~~~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~~ 473 (478)
+ .++++|+.+++.. .+|..|+|+++.+++.+..++..++++|+
T Consensus 386 ~-~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 386 S-VVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred H-HHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8 5678888877754 46999999999999999999988777764
No 10
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=1.1e-33 Score=288.61 Aligned_cols=411 Identities=13% Similarity=0.066 Sum_probs=335.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcCccchhH
Q 037703 48 GSIAGPMVAVNLSQYFLQVISVMMVGHL-GELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPISQQYRK 126 (478)
Q Consensus 48 ~~~~~p~~~~~~~~~~~~~~d~~~i~~~-G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~~~~~~~ 126 (478)
.+.+.|.+++++...+.+++|+.+++|+ |++++|+++.+.++.++.......|++ ++..+.++|+.| ++|+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~--~a~~~~is~~~~----~~~~~~ 75 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLP--VAISKFVAEASA----KNDRKN 75 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHh----ccchhh
Confidence 4678999999999999999999999996 999999999999998875333345788 999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCchhHHHHH
Q 037703 127 LGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLIS 205 (478)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 205 (478)
.++.++.++.+....+++.+++ ..+.+++...+..+++. ..++++..+..++..+.....+++|+.++.++....
T Consensus 76 ~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (488)
T TIGR02900 76 IKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYI 151 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHH
Confidence 9999999999999999998887 77778877777665543 246788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhh-----cCCCcchhHHHHHHHHHHHHHHHHHHHHhcccchhh--cccccHHHHHhHHHHHHHH
Q 037703 206 SCATVFFHIILCWALVLK-----FELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQT--RVQVSMELFQGIKEFFLLA 278 (478)
Q Consensus 206 ~i~~~~~~i~l~~~li~~-----~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 278 (478)
++++.++|+.++..++.. .+.|+.|+++++.+++.+..+...++.+++++.+.+ +.+..+.+++.+|++++.+
T Consensus 152 ~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~ 231 (488)
T TIGR02900 152 QVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVS 231 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHH
Confidence 999999998877666542 356788899999999999998877666544321111 1111233456789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC----CCh-HH---HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHH
Q 037703 279 IPSAFMVCLEWWSFEFLTLLSGLL----PNP-EL---EASVL-SVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAA 349 (478)
Q Consensus 279 lp~~~~~~~~~~~~~i~~~~~~~l----g~~-~~---~~aa~-~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~ 349 (478)
+|..+++........+++.++++. |.. .. ..+.| +++.++.++...+..+++++..|.+++++|+||.++.
T Consensus 232 ~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~ 311 (488)
T TIGR02900 232 LPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSI 311 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999988888777643 211 11 12222 4566778888788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccCcchhhHHHH
Q 037703 350 IIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGL----QAVLSEGGSQNLGAYAN 425 (478)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~----~~~l~~~g~~~~~~~~~ 425 (478)
++..++++++...+++|.++.+..+++++..+|.++++. ..++++.....++..+ +.++++.||+|.+++.+
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~----~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 387 (488)
T TIGR02900 312 EKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPDA----GNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNS 387 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCch----HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Confidence 999999999999999999999999999999988766553 4455566665655554 46788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcc
Q 037703 426 LTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQ 473 (478)
Q Consensus 426 ~~~~~~v~i~~~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~~ 473 (478)
+++ .++++++.+.+...+++|+.|+|+++.+++.+..++..++.+|.
T Consensus 388 ~~~-~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 388 LIG-AIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHH-HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998 57888887777655778999999999999999999998888763
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=8.8e-30 Score=253.90 Aligned_cols=402 Identities=10% Similarity=-0.046 Sum_probs=317.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcCccchh
Q 037703 47 LGSIAGPMVAVNLSQYFLQVISVMMVGHL-GELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPISQQYR 125 (478)
Q Consensus 47 l~~~~~p~~~~~~~~~~~~~~d~~~i~~~-G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~~~~~~ 125 (478)
+.|.+.-...+++...+.+++-..++.|+ |++++|.++..+++.+++......|++ ++..+.++|+ ++|+|
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~--~a~~~~ia~~------~~~~~ 74 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIF--NGVTKYVAQY------HDQPQ 74 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCcc--ceeeeeHHhc------CCCHH
Confidence 56777788889999999999999999996 999999999999998875344456666 8888888876 45788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCchhHHHH
Q 037703 126 KLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLI 204 (478)
Q Consensus 126 ~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (478)
+.++..+.++.+....+++.+++ ..+.+++...+..+++. ..+..+..+..++..+.....+.+|+.++.+....
T Consensus 75 ~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~ 150 (416)
T PRK15099 75 QLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNAL 150 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998887 88889999888766642 24566777777777888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcccchhhcccccHHHHHhHHHHHHHHHHHHHH
Q 037703 205 SSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIPSAFM 284 (478)
Q Consensus 205 ~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~ 284 (478)
..+++.++|+++ +++.+. ..|+.|+++|+.+++.+..+...++++++++.+..+.++ +.+++.+|++++.|+|..++
T Consensus 151 ~~~~~~~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~ll~~g~p~~~~ 227 (416)
T PRK15099 151 SLIVGSLIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKP-SWDNGLAGQLGKFTLMALIT 227 (416)
T ss_pred HHHHHHHHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhc-cCCHHHHHHHHHHHHHHHHH
Confidence 999999999887 444433 239999999999999999888777776544321111111 23456789999999999999
Q ss_pred HHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 037703 285 VCLEWWSFEFLTLLSG-LLPNPELEASVLSVCLATITT-LFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRAVLFLTVL 362 (478)
Q Consensus 285 ~~~~~~~~~i~~~~~~-~lg~~~~~~aa~~i~~~i~~~-~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~ 362 (478)
+...+.....++.+++ .+|+ .++++|+++.|+.+. ...+..+++++..|.++++ +|.++.++..++..+....
T Consensus 228 ~~~~~i~~~~~~~~l~~~~g~--~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~ 302 (416)
T PRK15099 228 SVTLPVAYVMMRNLLAAHYSW--DEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLP 302 (416)
T ss_pred HHHHHHHHHHHHHHHHhcCCH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHH
Confidence 9999999999988885 7887 478999999999885 5788999999999999995 6778899999999999999
Q ss_pred HHHHHHHHHHhchhHHHhhcCCcH-HHHHHHHHHHHHHHHHHHHHHH----HHHHhccCcchhhHHHHHHHHHHHHHHHH
Q 037703 363 ETVVVSSILYASRHVFGYIFSNDQ-EVVDYVTSMAPLICLCVILNGL----QAVLSEGGSQNLGAYANLTAYYHFGIPVA 437 (478)
Q Consensus 363 ~~~~~~~~~~~~~~~i~~lf~~~~-~~~~~~~~~l~i~~~~~~~~~~----~~~l~~~g~~~~~~~~~~~~~~~v~i~~~ 437 (478)
++++.+++++++++++..++.+|+ +. +.+++++.....++... ....-..++++.....++.. .++.+|+.
T Consensus 303 ~~~~~~~~~~l~a~~ii~l~~g~~~~~---~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~l~i~l~ 378 (416)
T PRK15099 303 AVAAASFTVWLLRDFAIWLLFSNKFTA---MRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-FTLLTGFA 378 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 999999999999999999997654 21 23344443333333322 22233456677777767665 66778888
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHccC
Q 037703 438 AALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQN 474 (478)
Q Consensus 438 ~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~~~ 474 (478)
+++.. .+|..|+++++.+++.+..+.+....+++.
T Consensus 379 ~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~~~~ 413 (416)
T PRK15099 379 HWLIP--LHGALGAAQAYMATYIVYFSLCCGVFLLYR 413 (416)
T ss_pred HHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77654 569999999999999999998887766543
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.98 E-value=3.4e-27 Score=235.69 Aligned_cols=381 Identities=15% Similarity=0.087 Sum_probs=322.2
Q ss_pred cChh-HHHHHHHHHHHHHHHHHHHH--HhhhhhhhHHHHHHhhccCCcCccchhHHHHHHHHHHHHHHHHHHHHHHH-HH
Q 037703 75 LGEL-FLSSTAIAISFSAVTGFSLL--CFRLLYFLLQASCSYRIVARPISQQYRKLGTQMHTAMFCLLLACLPVSLL-WA 150 (478)
Q Consensus 75 ~G~~-~~a~~~~~~~i~~~~~~~~~--~gl~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~ 150 (478)
+|.. +..+|..+.++.+++ .... .++. ++..|..++.. ++++|+.++..+..+......+++++++ ++
T Consensus 5 fG~s~~~Daf~~A~~ip~~l-~~l~~~gal~--~~~IP~~~~~~-----~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~l 76 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFL-RSLLAGGALS--AAFIPVFSKAR-----EKGEEEARRFISTLLTILLIISLLLTLLGIL 76 (451)
T ss_pred hcCCchhHHHHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHHHh-----ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5655 567899999999986 4433 3466 88999998864 4688888888888888888888888887 88
Q ss_pred hHHHHHHHc--CCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhcCCC-
Q 037703 151 NMGKLLILM--GQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILCWALVLKFELN- 227 (478)
Q Consensus 151 ~~~~i~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~G- 227 (478)
++++++..+ +.+++..+.+.++++++.+..++.++..++.+++|+++++..+....++.++..++..+++. ...|
T Consensus 77 fa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~--~~~~~ 154 (451)
T PF03023_consen 77 FAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLS--NSWGQ 154 (451)
T ss_pred HHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHH--HhcCc
Confidence 999999988 45778889999999999999999999999999999999999999887777766555444444 3467
Q ss_pred --cchhHHHHHHHHHHHHHHHHHHHHhcccchhhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Q 037703 228 --NIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNP 305 (478)
Q Consensus 228 --i~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~i~~~~~~~lg~~ 305 (478)
+.+.++|..++.++..++.....+|...+.+...+.+ .+.+|++++...|..+.....+....+++.+.+.+++
T Consensus 155 ~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~- 230 (451)
T PF03023_consen 155 ENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWR---DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGE- 230 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-
Confidence 8999999999999999999888887664433223222 2457999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHhhcC-
Q 037703 306 ELEASVLSVCLATITTLFT-IPDGLGAAASTRVSNALGAGNPQAAIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFS- 383 (478)
Q Consensus 306 ~~~~aa~~i~~~i~~~~~~-~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~- 383 (478)
.++++++.++++.++... +..+++++..|.+|++..++|.++.++..+++++....+.+|.++.+..+++++.+++.
T Consensus 231 -G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~ 309 (451)
T PF03023_consen 231 -GSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFE 309 (451)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHc
Confidence 467899999999998775 55899999999999999999999999999999999999999999999999999887773
Q ss_pred ---CcHHHHHHHHHHHHHHHHHHHHHHHHH----HHhccCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Q 037703 384 ---NDQEVVDYVTSMAPLICLCVILNGLQA----VLSEGGSQNLGAYANLTAYYHFGIPVAAALGFWLKMRGEGLWIGIQ 456 (478)
Q Consensus 384 ---~~~~~~~~~~~~l~i~~~~~~~~~~~~----~l~~~g~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~g~~g~~~a~~ 456 (478)
-|.+..+.....+.++.++.++.+++. .+.+.||+|.+++.++++ .++++.+.+++. +.+|+.|+++++.
T Consensus 310 rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~--~~~g~~Glala~s 386 (451)
T PF03023_consen 310 RGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLV--PFFGVAGLALATS 386 (451)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 367778889999999999999999864 445699999999999999 567776765554 5679999999999
Q ss_pred HHHHHHHHHHHHHHHcc
Q 037703 457 VGAFVQIVLLFLITSCQ 473 (478)
Q Consensus 457 i~~~v~~~~~~~~~~~~ 473 (478)
++..+..+++++.++|+
T Consensus 387 l~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 387 LSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988775
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=9.4e-27 Score=228.43 Aligned_cols=417 Identities=15% Similarity=0.028 Sum_probs=342.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-Chh-HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcCc
Q 037703 44 VKRLGSIAGPMVAVNLSQYFLQVISVMMVGHL-GEL-FLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPIS 121 (478)
Q Consensus 44 ~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~-G~~-~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~~ 121 (478)
-+.++|.++-....++++.+.+++...+++.. |.. ...++.++.++.+++--.+..| .|+++..|...++.. +
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaeg-afs~aFVPv~~~~~~----~ 80 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEG-AFSSAFVPVLAEAKK----K 80 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhch-hHhhhhhHHHHHHHH----c
Confidence 34577777888888999999999988888885 885 5679999999999974444444 355999999999877 6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc-CC--ChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC
Q 037703 122 QQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILM-GQ--DPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQS 197 (478)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~ 197 (478)
+++|+.++..+........+.+..+++ .++++.+.+.. .. |++....+....+++.|..++.++.....+.+|+.+
T Consensus 81 ~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~ 160 (518)
T COG0728 81 EGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRN 160 (518)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 677777777777777777788888887 77778888555 33 244444688888999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcccchhhcccccHHHHHhHHHHHHH
Q 037703 198 LVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLL 277 (478)
Q Consensus 198 ~~~~~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (478)
++.++.++.+..++.-+.....+....+....+.++++.++.+.+.++.+..++|.+...+.++.++. +.+|++.+.
T Consensus 161 ~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~---~~lk~~~~~ 237 (518)
T COG0728 161 RFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKD---PGLKRFLKL 237 (518)
T ss_pred eechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCc---hhHHHHHHH
Confidence 99999988777776655444444433222477889999999999999999999987754444444332 457999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 037703 278 AIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLF-TIPDGLGAAASTRVSNALGAGNPQAAIIAVRAV 356 (478)
Q Consensus 278 ~lp~~~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~-~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~ 356 (478)
..|..+.....|++..+++.+.+.+.+ .+++.+..++++.++.. .+..+++++..|.+|++..++|.++.++..+++
T Consensus 238 ~~p~~l~~sisQi~lli~~~iAS~l~~--Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~ 315 (518)
T COG0728 238 MLPALLGVSISQINLLIDTAIASFLAE--GSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWG 315 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 999999999999999999999999987 45788999999999977 566999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHhhcC----CcHHHHHHHHHHHHHHHHHHHHHHHH----HHHhccCcchhhHHHHHHH
Q 037703 357 LFLTVLETVVVSSILYASRHVFGYIFS----NDQEVVDYVTSMAPLICLCVILNGLQ----AVLSEGGSQNLGAYANLTA 428 (478)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~i~~lf~----~~~~~~~~~~~~l~i~~~~~~~~~~~----~~l~~~g~~~~~~~~~~~~ 428 (478)
++.++++++|.++.+.++++++.++.. -+++......+.+..+.++.+...+. -.+.+.+|+|.|+++.+++
T Consensus 316 i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~ 395 (518)
T COG0728 316 LRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIIS 395 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHH
Confidence 999999999999999999999887662 24666778889999999999888875 4456699999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcc
Q 037703 429 YYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQ 473 (478)
Q Consensus 429 ~~~v~i~~~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~~ 473 (478)
.++++.+. +...+.+|..|++++..++.+++..++++.++|+
T Consensus 396 -~~~n~~l~--~~l~~~~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 396 -LVVNILLN--LLLIPPLGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred -HHHHHHHH--HHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555 4455667999999999999999999998888765
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.93 E-value=2.7e-21 Score=197.36 Aligned_cols=393 Identities=11% Similarity=0.040 Sum_probs=289.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcCccc
Q 037703 45 KRLGSIAGPMVAVNLSQYFLQVISVMMVGHL-GELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPISQQ 123 (478)
Q Consensus 45 k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~-G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~~~~ 123 (478)
++..+-+....++++.....+++-..+++|+ |+++.|.++.+..+.++.......|++ .+. .|. . +++
T Consensus 5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~--~ai----i~~-~----~~~ 73 (492)
T PRK10459 5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIG--ASI----IQR-Q----DIS 73 (492)
T ss_pred HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHH--HHH----Hhc-c----cCC
Confidence 5577778888999999999999999999996 999999999999999975344445555 544 221 1 222
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCchhHH
Q 037703 124 YRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPM 202 (478)
Q Consensus 124 ~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 202 (478)
+++. +....+....+++.+++ ..+.+++...++ +++. ...+++.++..++..+.....+.++..++.+..
T Consensus 74 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~ 144 (492)
T PRK10459 74 HLQL----STLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKL 144 (492)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHH
Confidence 2333 33445555566666665 555666655554 3332 345777788888888888899999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcccchhhcccccHHHHHhHHHHHHHHHHHH
Q 037703 203 LISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIPSA 282 (478)
Q Consensus 203 ~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~ 282 (478)
....+...++..+....+.+ .+.|..+..+++.++..+..++.....++ +++ .+..+ +++..|++++.+.|..
T Consensus 145 a~~~~~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~-~~~--~~~~~---~~~~~k~ll~~~~~~~ 217 (492)
T PRK10459 145 AKIEISAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRK-IYR--PALHF---SLASVKPNLSFGAWQT 217 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhcc-cCC--cccee---cHHHHHHHHhhhHHHH
Confidence 77777777776666655543 46899999999999998877655433322 211 11122 2456799999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 037703 283 FMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFT-IPDGLGAAASTRVSNALGAGNPQAAIIAVRAVLFLTV 361 (478)
Q Consensus 283 ~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~-~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~ 361 (478)
.++...+....++.++++.+.++ .+++.|+.+.++.++... +...++++..|.+++. ++|.++.++.+++..++..
T Consensus 218 ~~~~~~~~~~~~d~~~lg~~lg~-~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~ 294 (492)
T PRK10459 218 AERIINYLNTNIDTILIGRILGA-EVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLG 294 (492)
T ss_pred HHHHHHHHHhcCchhhhhHhhch-HhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHH
Confidence 99999999999998887765332 357889999999987554 4456788999999985 5788899999999999999
Q ss_pred HHHHHHHHHHHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccCcchhhHHHHHHHHHHHHHHHH
Q 037703 362 LETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGL----QAVLSEGGSQNLGAYANLTAYYHFGIPVA 437 (478)
Q Consensus 362 ~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~----~~~l~~~g~~~~~~~~~~~~~~~v~i~~~ 437 (478)
.+++|+.+.+..+++++..++.+|+ ...+...+.+.....++..+ ...+.+.||+|..++.+++. .++.+|..
T Consensus 295 ~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~ 371 (492)
T PRK10459 295 IINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAI 371 (492)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHH
Confidence 9999999999999998887665432 23345555555555555443 45678899999999999887 56667776
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 037703 438 AALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSC 472 (478)
Q Consensus 438 ~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~ 472 (478)
+.+. ..+|+.|+++++.+++.+..+...+..+|
T Consensus 372 ~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 372 VIGG--QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554 34699999999999999999888887744
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.91 E-value=4.4e-20 Score=187.92 Aligned_cols=401 Identities=17% Similarity=0.110 Sum_probs=285.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcCc
Q 037703 43 EVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHL-GELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPIS 121 (478)
Q Consensus 43 ~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~-G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~~ 121 (478)
..+++.+.+.-...+++...+.+++-...++|+ |+++.|.++.+.++..++......|+. .+....++++.. +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~--~ai~r~ia~~~~----~ 77 (480)
T COG2244 4 LKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLP--AAITREIAEYRE----K 77 (480)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCc--HHHHHHHHHhhc----c
Confidence 467788889999999999999999999999996 999999999999999987444446777 999888888765 5
Q ss_pred cchhHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCchh
Q 037703 122 QQYRKLGTQ-MHTAMFCLLLACLPVSLLWANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVT 200 (478)
Q Consensus 122 ~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~ 200 (478)
+++...... ....+......+++.........+. ++ .....+++.....+.........+.+|+.++.+
T Consensus 78 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (480)
T COG2244 78 GEYLLLILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFG 147 (480)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 555555555 5555555555555544443333222 11 223347788899999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcccchhhcccccHHHHHhHHHHHHHHHH
Q 037703 201 PMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIP 280 (478)
Q Consensus 201 ~~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 280 (478)
+.....+.. ..-+.....+. ........++...+..........+.+++++... +. ..+..++..++.++.++|
T Consensus 148 ~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~~p 221 (480)
T COG2244 148 PLALSIVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLK-RP-ILRFSLALLKELLRFGLP 221 (480)
T ss_pred cchhHHHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-cc-ccCchhHHHHHHHHHhhH
Confidence 888774333 11111111121 1345556667777776666665555542221111 11 111135678999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 037703 281 SAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRAVLFLT 360 (478)
Q Consensus 281 ~~~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~ 360 (478)
..+..........+|.+++++.-+. .+++.|+.+.++......+..+++.+..|.+++.+.++|.++.++..++..++.
T Consensus 222 ~~~~~~~~~l~~~~D~~~i~~~l~~-~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~ 300 (480)
T COG2244 222 LLLSSLLNFLFTNIDTLLLGLFLGP-AQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLL 300 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-hHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 9999999999999998888865332 357889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhchhHHHhhcCCcHHH-HHHHHHHHHHH-HHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHH
Q 037703 361 VLETVVVSSILYASRHVFGYIFSNDQEV-VDYVTSMAPLI-CLCVILNGLQAVLSEGGSQNLGAYANLTAYYHFGIPVAA 438 (478)
Q Consensus 361 ~~~~~~~~~~~~~~~~~i~~lf~~~~~~-~~~~~~~l~i~-~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~v~i~~~~ 438 (478)
..+++|..+.+..+++++..++.+++.. .......+.+. ....+....+..+++.|+++..++.+.++ .++++ ..
T Consensus 301 ~~~~~p~~~~l~~~~~~~i~~~fg~~~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~i~~~--~l 377 (480)
T COG2244 301 LLISIPALLGLLLLAPPIITLLFGEKYASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLIS-ALLNL--IL 377 (480)
T ss_pred HHHHHHHHHHHHHHHhhhheeecCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHH-HHHHH--HH
Confidence 9999999999999999888777544332 22222222222 22223333467889999999999999998 33444 44
Q ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Q 037703 439 ALGFWLKMRGEGLWIGIQVGAFVQIVLLFLIT 470 (478)
Q Consensus 439 ~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~ 470 (478)
.+...+.+|..|+..+.. +.........+..
T Consensus 378 ~~~li~~~g~~g~~~a~~-~~~~~~~~~~~~~ 408 (480)
T COG2244 378 NLLLIPRFGLIGAAIATA-SVIALALLLFYIL 408 (480)
T ss_pred HhHHHHhhhhhhHHHHHH-HHHHHHHHHHHHH
Confidence 444556679999999983 3333333333333
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.89 E-value=2.2e-21 Score=195.52 Aligned_cols=207 Identities=14% Similarity=0.099 Sum_probs=191.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCc
Q 037703 40 YIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARP 119 (478)
Q Consensus 40 ~~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~ 119 (478)
..+.+|++++.++|.+++++.+.....+|+.+++++|++++|+++++.++..+. +.+..|++ .+.+++++|++|
T Consensus 231 ~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~--~a~~~lvgq~~G--- 304 (464)
T PRK00187 231 SRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLS--YAVTMRVGQHYG--- 304 (464)
T ss_pred CHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHc---
Confidence 356799999999999999999999999999999999999999999999999985 89999999 999999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC--Ch---hHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 037703 120 ISQQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQ--DP---AISSEAGKFTVWLIPALFGYGTLQPLVRYL 193 (478)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l 193 (478)
+||+|++++..+.++.++...+++.+++ +++++++.+.+.. ++ |+.+.+..|+++.+++.++.+++.+..+++
T Consensus 305 -a~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~l 383 (464)
T PRK00187 305 -AGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAI 383 (464)
T ss_pred -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 9999999999999999999999998887 8899999999953 33 688899999999999999999999999999
Q ss_pred hhcCchhHHHHHHHHHH-HHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 037703 194 QVQSLVTPMLISSCATV-FFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFS 253 (478)
Q Consensus 194 ~~~~~~~~~~~~~i~~~-~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~ 253 (478)
|+.|+++.+++.+++.. ++|+++++++.+.+++|+.|+|+++.+++++..+.....++++
T Consensus 384 rg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 384 RGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987 9999999999988889999999999999999988776666443
No 17
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.88 E-value=1.7e-20 Score=189.17 Aligned_cols=200 Identities=14% Similarity=0.103 Sum_probs=182.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 037703 269 QGIKEFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQA 348 (478)
Q Consensus 269 ~~~~~~~~~~lp~~~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~ 348 (478)
+..|+++++++|.++++........+++.+++++|+ .++|++++++++..+.+.+..+++++..+.+||++|+||+++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~--~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGK--EAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 348999999999999999999999999999999998 568999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHhhcC--CcHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccCcchhhH
Q 037703 349 AIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFS--NDQEVVDYVTSMAPLICLCVILNGL----QAVLSEGGSQNLGA 422 (478)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~--~~~~~~~~~~~~l~i~~~~~~~~~~----~~~l~~~g~~~~~~ 422 (478)
+++..+.++.+++.++++.+++.+.+++++..+|+ .|+|+.+.+..++++...+.++..+ +..+++.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6899999999999999988888775 46788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----cCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 037703 423 YANLTAYYHFGIPVAAALGFW----LKMRGEGLWIGIQVGAFVQIVLLFLITS 471 (478)
Q Consensus 423 ~~~~~~~~~v~i~~~~~~~~~----~~~g~~g~~~a~~i~~~v~~~~~~~~~~ 471 (478)
.+++++ +++++++.+.+.+. +++|+.|+|+|+.+++.+..++..+++.
T Consensus 184 ~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 184 LINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999987 78888888887764 4789999999999999998887766554
No 18
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.88 E-value=1.4e-20 Score=190.04 Aligned_cols=207 Identities=14% Similarity=0.119 Sum_probs=194.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcC
Q 037703 41 IDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPI 120 (478)
Q Consensus 41 ~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~ 120 (478)
++.+|++++.++|.+++++.+.....++..+++++|++++++++++.++.++. ..+..|++ .+.++.++|++|
T Consensus 235 ~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gl~--~a~~~~v~~~~G---- 307 (456)
T PRK01766 235 WAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSSLL-FMLPLSLA--MALTIRVGFELG---- 307 (456)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHhc----
Confidence 56799999999999999999999999999999999999999999999999986 88889999 999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCch
Q 037703 121 SQQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLV 199 (478)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~ 199 (478)
+||++++++..+.++.++..++++.+++ +.+++++.+++.+|+++.+.+..|+++..+..++.+++....+++|+.+++
T Consensus 308 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~ 387 (456)
T PRK01766 308 AGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDT 387 (456)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCcc
Confidence 9999999999999999999999998887 889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcc
Q 037703 200 TPMLISSCATV-FFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSS 254 (478)
Q Consensus 200 ~~~~~~~i~~~-~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~ 254 (478)
+.++..++++. ++++++.+++.+.+++|+.|+++++.+++++..++..+++++.+
T Consensus 388 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~ 443 (456)
T PRK01766 388 RVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQ 443 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999887 78999999988878899999999999999999998877776543
No 19
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.87 E-value=7.1e-20 Score=182.90 Aligned_cols=203 Identities=16% Similarity=0.097 Sum_probs=185.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 037703 268 FQGIKEFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQ 347 (478)
Q Consensus 268 ~~~~~~~~~~~lp~~~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~ 347 (478)
++..|++++.++|..+++........+++.+++++|++ .++|+.+++.++.++...+..+++.+..+.+||++|+||++
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~-~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSP-VYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45679999999999999999999999999999998542 46889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccCcchhhHH
Q 037703 348 AAIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGL----QAVLSEGGSQNLGAY 423 (478)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~----~~~l~~~g~~~~~~~ 423 (478)
++++..+.++.++.+.+++..++...+.+++..+++.|+|+.+.+.+++++...+.++..+ +..+++.||+|.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 9999999999999999999988888888999999999999999999999999888877665 577888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 037703 424 ANLTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSC 472 (478)
Q Consensus 424 ~~~~~~~~v~i~~~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~ 472 (478)
.++++ .++++++.+++.+..++|+.|+++|+.+++.+..++..+++++
T Consensus 164 ~~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 164 LLVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999 6889999999988888999999999999999988887666654
No 20
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.86 E-value=1.2e-19 Score=181.30 Aligned_cols=211 Identities=18% Similarity=0.117 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccC
Q 037703 38 DVYIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVA 117 (478)
Q Consensus 38 ~~~~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~ 117 (478)
+..++..|+++++++|.+++++.......+-+.+++++|++++|+++++.++.++. +++..|++ ++.+++++|++|
T Consensus 234 ~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~~~-~~~~~gi~--~a~~~lvG~~~G- 309 (455)
T COG0534 234 KPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIASFI-FMPPFGIA--QAVTILVGQNLG- 309 (455)
T ss_pred CCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHhC-
Confidence 33468899999999999999999999999999999999999999999999999996 99999999 999999999999
Q ss_pred CcCccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 037703 118 RPISQQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQ 196 (478)
Q Consensus 118 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 196 (478)
+||+|++++..+.+..++..+++...++ .++++++.++|.+|+|+.+.+..++++.....++.+.+....+++|+.
T Consensus 310 ---a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~ 386 (455)
T COG0534 310 ---AGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGA 386 (455)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999888 999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHH-HHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcccc
Q 037703 197 SLVTPMLISSCATV-FFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSAC 256 (478)
Q Consensus 197 ~~~~~~~~~~i~~~-~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~ 256 (478)
|+.+.+.+.++++. .+.+++.+++.+.. +|..|.|++..+++.+..+...++++++++.
T Consensus 387 g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~ 446 (455)
T COG0534 387 GDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWR 446 (455)
T ss_pred CCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 99999999888876 55678888887555 9999999999999999999999988876643
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.86 E-value=1.5e-19 Score=181.94 Aligned_cols=204 Identities=17% Similarity=0.090 Sum_probs=188.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCh-hHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCC
Q 037703 40 YIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGE-LFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVAR 118 (478)
Q Consensus 40 ~~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~G~-~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~ 118 (478)
.++..|+++++++|..+++....+...+...+++++|+ +++|+++++.++.++. +.+..|++ .+.++.++|++|
T Consensus 229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~~~-~~~~~gi~--~a~~~lvg~~~G-- 303 (453)
T PRK09575 229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMVLY-YLVAEGIA--EGMQPPVSYYFG-- 303 (453)
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH-HHHHHHHH--HhhHHHHHHHhc--
Confidence 35678999999999999999999999999999999985 6899999999999986 88999999 999999999999
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC-ChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Q 037703 119 PISQQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQ-DPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQ 196 (478)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 196 (478)
+||+|++++..+.++.++...+++.+++ +.+++++.++++. |+|+.+.+.+|+++..++.++.++..+..+++|+.
T Consensus 304 --a~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~ 381 (453)
T PRK09575 304 --ARQYDNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAV 381 (453)
T ss_pred --CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999998 8899999999985 78999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 037703 197 SLVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTF 252 (478)
Q Consensus 197 ~~~~~~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~ 252 (478)
++.+.+++.++...++++++.+++... +|+.|+|+++.+++++..++...++++
T Consensus 382 g~~~~~~~~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 382 NQGGKALFISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred CCcHHHHHHHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999988888888899888888643 899999999999999998888776654
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.82 E-value=7.9e-18 Score=172.43 Aligned_cols=205 Identities=16% Similarity=0.082 Sum_probs=185.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcC
Q 037703 41 IDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPI 120 (478)
Q Consensus 41 ~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~ 120 (478)
++..|++++.+.|..++++...+...+|+.+.+++|++++++|+.+.++.++....+..+++ .+..|.++|++|
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~--~~~~P~~s~~~~---- 292 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLS--TVLLPKLSRHAS---- 292 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh----
Confidence 46689999999999999999999999999886667999999999999999875334567888 999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----ChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 037703 121 SQQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQ----DPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQV 195 (478)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 195 (478)
++|+|+.++..+.+......++++.+++ ..+++++..++.. ++|..+.+..++++++++.++..+.....+.+++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a 372 (502)
T TIGR01695 293 EGNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYA 372 (502)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 9999999999999999999999999997 8899999998855 4577888999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 037703 196 QSLVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFS 253 (478)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~ 253 (478)
.|+++.+++.++...++|++++++++. .+|+.|+++|+.+++.+..++..++.+|+
T Consensus 373 ~g~~~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 373 RKDTRTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred ccCCccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999984 48999999999999999999888777654
No 23
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.75 E-value=1.9e-15 Score=151.30 Aligned_cols=206 Identities=17% Similarity=0.082 Sum_probs=191.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcC
Q 037703 41 IDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPI 120 (478)
Q Consensus 41 ~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~ 120 (478)
++..|++++...|..++....++..++|+.+.+++++.++++++.+.++.+++...+..+++ +...|..++...
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~--tv~~P~ls~~~~---- 267 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSIS--TVVFPKLSRLAA---- 267 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHh----
Confidence 46699999999999999999999999999999999999999999999999987556677888 999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 037703 121 SQQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMG----QDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQV 195 (478)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 195 (478)
+||.++.++..++.+.....+.+|.++. ..+++++++.+. -+.|..+.....+++++++.|+.++...+...+.+
T Consensus 268 ~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya 347 (451)
T PF03023_consen 268 EGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYA 347 (451)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999997 999999999874 36677788899999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcc
Q 037703 196 QSLVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSS 254 (478)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~ 254 (478)
.++++.++..++++.++|++++..+.. .+|..|.++|+.++.++..++.++.++|+.
T Consensus 348 ~~~~~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 348 LGDTKTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred ccCcHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999988884 499999999999999999999998887765
No 24
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.73 E-value=1.1e-15 Score=156.16 Aligned_cols=202 Identities=18% Similarity=0.106 Sum_probs=174.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-Ch------hHHHHH----HHHHHHHHHHHHHHHHhhhhhhhHHH
Q 037703 41 IDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHL-GE------LFLSST----AIAISFSAVTGFSLLCFRLLYFLLQA 109 (478)
Q Consensus 41 ~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~-G~------~~~a~~----~~~~~i~~~~~~~~~~gl~~~~a~~~ 109 (478)
++.+|++++.++|.+++++...+...+|+.++++. ++ ++.+.+ +.+.++.++. ..+..+++ .+..|
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~--~~~~p 297 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLS--TALVP 297 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHH--HHHHH
Confidence 56889999999999999999999999999999875 22 222332 3455666665 56678888 99999
Q ss_pred HHHhhccCCcCccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHH
Q 037703 110 SCSYRIVARPISQQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQP 188 (478)
Q Consensus 110 ~vs~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 188 (478)
.++++.| +||+|+.++..++...+...++++.++. ..+++++...+..++ .+.+++++.++..++..+...
T Consensus 298 ~~s~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~ 369 (488)
T TIGR02900 298 DISEAMA----KKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAP 369 (488)
T ss_pred HHHHHHH----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999998887 888999999886443 356789999999999999999
Q ss_pred HHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 037703 189 LVRYLQVQSLVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFS 253 (478)
Q Consensus 189 ~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~ 253 (478)
..+.+++.|+.+...+.++...++|+++++.++..+++|+.|+++++.+++++..++..+..+|.
T Consensus 370 ~~~~l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 370 LQSILQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998855679999999999999999999988877653
No 25
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.72 E-value=2.3e-15 Score=146.28 Aligned_cols=190 Identities=21% Similarity=0.208 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 037703 280 PSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRAVLFL 359 (478)
Q Consensus 280 p~~~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~ 359 (478)
|.++++...+....+++.+++++|+ .++++|+++.++..+...+..+++++..|.+++++|++|++++++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGP--VDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 6788889999999999999999996 46788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccCcchhhHHHHHHHHHHHHHH
Q 037703 360 TVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGL----QAVLSEGGSQNLGAYANLTAYYHFGIP 435 (478)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~----~~~l~~~g~~~~~~~~~~~~~~~v~i~ 435 (478)
..+++++.+++.+.+++++..+++.|++..+.+..++++..+..++.++ +..+++.||.+.+++.++++ .++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999987888888888888888888887776 46778899999999999988 567788
Q ss_pred HHHHHHH-hcC-CchhHHHHHHHHHHHHHHHHHHHHHHc
Q 037703 436 VAAALGF-WLK-MRGEGLWIGIQVGAFVQIVLLFLITSC 472 (478)
Q Consensus 436 ~~~~~~~-~~~-~g~~g~~~a~~i~~~v~~~~~~~~~~~ 472 (478)
..+.+.+ ..+ +|+.|++++..+++.+..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8777766 556 789999999999999999988777664
No 26
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.71 E-value=5e-18 Score=146.27 Aligned_cols=160 Identities=21% Similarity=0.231 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcCccchhHHHHHHH
Q 037703 53 PMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPISQQYRKLGTQMH 132 (478)
Q Consensus 53 p~~~~~~~~~~~~~~d~~~i~~~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~ 132 (478)
|.+++++.+.+...+|+.+++++|++++++++++.++.++. ..+..|++ .+..+.++|++| ++|+|++++..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~--~a~~~~~s~~~G----~~~~~~~~~~~~ 73 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLA--TALQILISQNIG----AGDYKRAKKVVR 73 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHH--HHHHHHHCCCCC----SSSTTTCCCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhccccc--ccccceeecccc----cccccccccccc
Confidence 89999999999999999999999999999999999999986 88999999 999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH-
Q 037703 133 TAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATV- 210 (478)
Q Consensus 133 ~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~- 210 (478)
.++.+...++++.+++ .++.+++.++++.|+++.+.+.+|+++..+..|+..+.....+++++.|+.++..+.+++..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 153 (162)
T PF01554_consen 74 QGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFW 153 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHH
T ss_pred cccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 9999999999999998 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 037703 211 FFHIILCWA 219 (478)
Q Consensus 211 ~~~i~l~~~ 219 (478)
++|++++|+
T Consensus 154 ~~~i~l~yl 162 (162)
T PF01554_consen 154 IINIPLAYL 162 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhHHhC
Confidence 999999875
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.71 E-value=3.4e-17 Score=141.08 Aligned_cols=158 Identities=23% Similarity=0.356 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 037703 280 PSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQAAIIAVRAVLFL 359 (478)
Q Consensus 280 p~~~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~ 359 (478)
|.+++++.+.....++..+++++|+ .++++++++.++.++..++..|++++..+.+|+++|++|++++++..+.++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~--~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGP--EALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTT--CCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 8899999999999999999999987 46788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH----HhccCcchhhHHHHHHHHHHHHHH
Q 037703 360 TVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQAV----LSEGGSQNLGAYANLTAYYHFGIP 435 (478)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~----l~~~g~~~~~~~~~~~~~~~v~i~ 435 (478)
..+++++.++...++++++.++|++|+++.+.+..++++..+..++.+++.. +++.||++.+++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999888654 566999999999999999999999
Q ss_pred HHHH
Q 037703 436 VAAA 439 (478)
Q Consensus 436 ~~~~ 439 (478)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 28
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.71 E-value=7.9e-14 Score=137.72 Aligned_cols=233 Identities=16% Similarity=0.071 Sum_probs=201.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcC
Q 037703 41 IDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPI 120 (478)
Q Consensus 41 ~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~ 120 (478)
.+..|++.+...|+.++...+++..++|+.+-+.+.+.+.+.+..+.++.++....+..+++ +...|..|++..
T Consensus 228 ~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~--tvllP~lSr~~~---- 301 (518)
T COG0728 228 DPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALS--TVLLPSLSRHAA---- 301 (518)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHhh----
Confidence 37799999999999999999999999999999999999999999999999998667777777 999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----ChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 037703 121 SQQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQ----DPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQV 195 (478)
Q Consensus 121 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 195 (478)
++|.++.++..+.++.+...+++|.++. ..+++|+++.+.. +++......+.+..++.+.++..+..++...+.+
T Consensus 302 ~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYA 381 (518)
T COG0728 302 NGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYA 381 (518)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 9999999998732 4566677888999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcccchhhcccccHHHHHhHHHHH
Q 037703 196 QSLVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFF 275 (478)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (478)
.++++.++...+++.++|+++++.+. +.+|..|.++++.++.++++.+.++..+|+..... ...|.... ..
T Consensus 382 r~d~ktP~~i~ii~~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~------~~~~~~~~-~~ 452 (518)
T COG0728 382 REDTKTPMKIAIISLVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRLVYLP------GRGWGLFL-IL 452 (518)
T ss_pred ccCCCcChHHHHHHHHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc------cchhhHHH-HH
Confidence 99999999999999999999998887 55999999999999999999999888877653222 22233344 55
Q ss_pred HHHHHHHHHHHHH
Q 037703 276 LLAIPSAFMVCLE 288 (478)
Q Consensus 276 ~~~lp~~~~~~~~ 288 (478)
|..+-..++....
T Consensus 453 k~~l~~~i~~~~~ 465 (518)
T COG0728 453 KLLLASAIMAAAL 465 (518)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 29
>PRK10459 colanic acid exporter; Provisional
Probab=99.68 E-value=1.9e-13 Score=139.55 Aligned_cols=200 Identities=15% Similarity=0.053 Sum_probs=170.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCc
Q 037703 41 IDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHL-GELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARP 119 (478)
Q Consensus 41 ~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~-G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~ 119 (478)
++..|++++++.|...+++...+...+|+.++|++ |++++|.|+.+.++.+.....+...++ ....|..++.
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~--~v~~P~~s~~----- 275 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIIT--RVAFPVFAKI----- 275 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHh-----
Confidence 45689999999999999999999999999999997 999999999999999875344444556 7788888875
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCc
Q 037703 120 ISQQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSL 198 (478)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~ 198 (478)
++|+++.++.+++.......+++|.++. ...+++++..+..++ ...+...++++++...+..+.......+++.|+
T Consensus 276 -~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~ 352 (492)
T PRK10459 276 -QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGR 352 (492)
T ss_pred -cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 5578889999999999999999998887 888899998876544 456778899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 037703 199 VTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTF 252 (478)
Q Consensus 199 ~~~~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~ 252 (478)
.+.....+++..+++++..+.+. ..+|+.|+++++.+++.+..++..++..|
T Consensus 353 ~~~~~~~~~~~~~~~i~~~~~~~--~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 353 ADLSFKWNVFKTFLFIPAIVIGG--QLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH--hhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888888888777776 44899999999999999988888877744
No 30
>PRK15099 O-antigen translocase; Provisional
Probab=99.68 E-value=1.6e-14 Score=144.11 Aligned_cols=199 Identities=12% Similarity=0.005 Sum_probs=167.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-hcChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCc
Q 037703 41 IDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVG-HLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARP 119 (478)
Q Consensus 41 ~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~-~~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~ 119 (478)
++..|++++++.|..++++...+....|+.+++ ++|++++|.|+.+.++...+...+..+++ ++..|.++++
T Consensus 211 ~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~--~a~~P~~s~~----- 283 (416)
T PRK15099 211 NGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFS--VYLLPTLSRL----- 283 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhc-----
Confidence 567899999999999999999999999999997 56999999999999998743367788898 9999999984
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCc
Q 037703 120 ISQQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSL 198 (478)
Q Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~ 198 (478)
+|+|+.++..+........++++.+++ .+++++++.++..++ .+.+.+++++.+++.++...+......+...++
T Consensus 284 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~ 359 (416)
T PRK15099 284 --TEKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKAS 359 (416)
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888877 789999999987655 234567888888888887776666655557777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 037703 199 VTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTF 252 (478)
Q Consensus 199 ~~~~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~ 252 (478)
.+......+...+++++++++++ +.+|..|+++++.+++++..+.......+
T Consensus 360 ~~~~~~~~~~~~~l~i~l~~~li--~~~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 360 LRFYILAEVSQFTLLTGFAHWLI--PLHGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888889999999999 44999999999999999999988766653
No 31
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.67 E-value=4.6e-13 Score=125.57 Aligned_cols=271 Identities=13% Similarity=0.091 Sum_probs=200.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcCccchhH
Q 037703 48 GSIAGPMVAVNLSQYFLQVISVMMVGHL-GELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPISQQYRK 126 (478)
Q Consensus 48 ~~~~~p~~~~~~~~~~~~~~d~~~i~~~-G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~~~~~~~ 126 (478)
+|.+.-...+++...+.+++-..++.|. |+++.|.++.+..+.++.......|+. ++....+++... ++++
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~--~~~~r~~~~~~~------~~~~ 73 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLS--QAIVRFIAEYKD------KKEL 73 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhH--HHHHHHHHHhhh------hHHH
Confidence 4667778888999999999999999996 999999999999999986444467777 888888887633 3455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCchhHHHHHH
Q 037703 127 LGTQMHTAMFCLLLACLPVSLLWANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISS 206 (478)
Q Consensus 127 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 206 (478)
.+.............+++......... .+..++.. ..+........++........+++++.++.+.....+
T Consensus 74 ~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (273)
T PF01943_consen 74 RSAYFSSVLFLLLIFSLIFLLILLIAS----FFGNPSLS----LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISN 145 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HcCCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544444444333322212 33333221 1122222222257788888999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcccchhhcccccHHHHHhHHHHHHHHHHHHHHHH
Q 037703 207 CATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIPSAFMVC 286 (478)
Q Consensus 207 i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~ 286 (478)
+...+...+....+... +.+..+..++..++.++..+...++.+|+.+ .+....+++..|++++.+.|..+...
T Consensus 146 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (273)
T PF01943_consen 146 IISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR-----PRFSFFSKKFFKEILRFGLPLFLSSL 219 (273)
T ss_pred HHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----ccccccchHHHHHHHHHHHHHHHHHH
Confidence 88888887766666644 3348899999999999998888888776542 11122225668999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 037703 287 LEWWSFEFLTLLSGLLPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNAL 341 (478)
Q Consensus 287 ~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~ 341 (478)
........+..+++++.+. .+++.|+++.++......++.++.++..|.+++.+
T Consensus 220 ~~~~~~~~d~~ii~~~~g~-~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 220 LSWLYSQIDRLIIGYFLGP-EAVGIYSVAYRLASAISFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred HHHHHHHhHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999998888876554 35889999999999999999999999999999863
No 32
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.58 E-value=8e-13 Score=134.68 Aligned_cols=187 Identities=18% Similarity=0.171 Sum_probs=170.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCC
Q 037703 40 YIDEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHL-GELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVAR 118 (478)
Q Consensus 40 ~~~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~-G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~ 118 (478)
.++..|++++.++|..+.++...+.+.+|+.+++++ |++++|.|+.+.++.... ..+...++ ....|..++...
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~--~~l~P~~s~~~~-- 282 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALN--RVLFPALSRAYA-- 282 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHH--HHHHHHHHHHHH--
Confidence 467899999999999999999999999999999997 999999999888888875 78888999 999999999999
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcC
Q 037703 119 PISQQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQS 197 (478)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~ 197 (478)
++|.++.++..+.........+++..+. ..+++++...+..++.. .+...+++.++..++..+.......+++.|
T Consensus 283 --~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g 358 (480)
T COG2244 283 --EGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALG 358 (480)
T ss_pred --cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999998 88899999987655432 266778999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHH
Q 037703 198 LVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTS 238 (478)
Q Consensus 198 ~~~~~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~ 238 (478)
+.+.....+.++.++|++++++++ +.+|..|++.++ .+
T Consensus 359 ~~~~~~~~~~~~~i~~~~l~~~li--~~~g~~g~~~a~-~~ 396 (480)
T COG2244 359 KQRLLLLISLISALLNLILNLLLI--PRFGLIGAAIAT-AS 396 (480)
T ss_pred cchhhHHHHHHHHHHHHHHHhHHH--HhhhhhhHHHHH-HH
Confidence 999999999999999999999999 559999999999 54
No 33
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.44 E-value=5.2e-10 Score=103.54 Aligned_cols=245 Identities=14% Similarity=0.147 Sum_probs=172.5
Q ss_pred HHHHHHHHHHhc-ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcCccchhHHHHHHHHHHHHHHHHH
Q 037703 64 LQVISVMMVGHL-GELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPISQQYRKLGTQMHTAMFCLLLAC 142 (478)
Q Consensus 64 ~~~~d~~~i~~~-G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~ 142 (478)
.++.-..+++|. |+++.|.++....+..+.......|+. ..... . . ++|+++.++..+..+......+
T Consensus 3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~--~~~~~----~-~----~~~~~~~~~~~~~~~~~~~~~~ 71 (251)
T PF13440_consen 3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLR--QSLVR----S-A----ARDKQDIRSLLRFSLLVSLLLA 71 (251)
T ss_pred HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHH--HHHHH----h-h----ccCHHHHHHHHHHHHHHHHHHH
Confidence 456777888886 999999999999999976333345554 44433 2 2 4566667777666665544444
Q ss_pred HHHHHHHHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHh
Q 037703 143 LPVSLLWANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILCWALVL 222 (478)
Q Consensus 143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~ 222 (478)
++..++ ...+..++. +++ ...++....+..++........+.+++.++.+......+...++.......+..
T Consensus 72 ~~~~~~---~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (251)
T PF13440_consen 72 VILAIL---AILIAYFFG-DPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLY 143 (251)
T ss_pred HHHHHH---HHHHHHHhC-Chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433 111222333 322 223456677778888999999999999999999888888888877444444443
Q ss_pred hcCCCcchhHHHHHHHHHHHHHHHHHHHHhcccchhhcccccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 037703 223 KFELNNIGAALAIGTSYWLNVLLLGLYMTFSSACAQTRVQVSMELFQGIKEFFLLAIPSAFMVCLEWWSFEFLTLLSGL- 301 (478)
Q Consensus 223 ~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~i~~~~~~~- 301 (478)
. +.+..+..++..++.++..+......+++.+ ... +.+..| .++.+.|..+.....+.....+..+++.
T Consensus 144 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 213 (251)
T PF13440_consen 144 L-GLNLWSILLAFIISALLALLISFYLLRRKLR-----LSF---KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYF 213 (251)
T ss_pred H-HhhHHHHHHHHHHHHHHHHHHHHHHhccccC-----CCc---hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3488888999999988877766654332211 111 122224 7899999999999999999999988888
Q ss_pred CCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 037703 302 LPNPELEASVLSVCLATITTLF-TIPDGLGAAASTRVSN 339 (478)
Q Consensus 302 lg~~~~~~aa~~i~~~i~~~~~-~~~~~~~~a~~~~vs~ 339 (478)
+|+ .+++.|+++.++..... .+..++++...|.++|
T Consensus 214 l~~--~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar 250 (251)
T PF13440_consen 214 LGP--EAVGIYSVAQRLASLPASLLSSAISSVFFPKLAR 250 (251)
T ss_pred cCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 755 45788999999999888 8999999999999987
No 34
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.18 E-value=2.7e-09 Score=106.41 Aligned_cols=202 Identities=17% Similarity=0.118 Sum_probs=174.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 037703 268 FQGIKEFFLLAIPSAFMVCLEWWSFEFLTLLSGLLPNPELEASVLSVCLATITT-LFTIPDGLGAAASTRVSNALGAGNP 346 (478)
Q Consensus 268 ~~~~~~~~~~~lp~~~~~~~~~~~~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~-~~~~~~~~~~a~~~~vs~~~g~~~~ 346 (478)
+.+.|++++++.|..+....+.....+...+.+++|+ ...|+.++++..... -+.+..+++.+..+.++|.+|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~--leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGN--LELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccc--hHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 5778999999999999999999999999999999999 456778888887776 5678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHH----HHHHHhccCcchhhH
Q 037703 347 QAAIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNG----LQAVLSEGGSQNLGA 422 (478)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~----~~~~l~~~g~~~~~~ 422 (478)
+....+..++........++.+.+ +...++|...+..|+++.+.+..+.+......+.+. ++..+++.++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999988888888887655 455589999999999988887777766665555544 456777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcc
Q 037703 423 YANLTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQ 473 (478)
Q Consensus 423 ~~~~~~~~~v~i~~~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~~ 473 (478)
++...+ ..+.+++.+.+.+.+++|..|+.++..++++.....+..+....
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 888888 78999999999999999999999999999999999998887654
No 35
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.89 E-value=9.3e-06 Score=82.53 Aligned_cols=198 Identities=12% Similarity=0.093 Sum_probs=134.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCh--
Q 037703 272 KEFFLLAIPSAFMVCLEWWSFEFLTLLSGL--LPNPELEASVLSVCLATITTLF-TIPDGLGAAASTRVSNALGAGNP-- 346 (478)
Q Consensus 272 ~~~~~~~lp~~~~~~~~~~~~~i~~~~~~~--lg~~~~~~aa~~i~~~i~~~~~-~~~~~~~~a~~~~vs~~~g~~~~-- 346 (478)
++.++.......+.+.-.+.+.-+..++.. +.+.+ +=+.|++++++.++.- .+...+-.......++...+++.
T Consensus 253 ~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~-~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 253 RDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFE-DQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHH-HhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 677888888888888888888888877777 55533 2367999999999754 56678888888888888876543
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----c
Q 037703 347 -------QAAIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQAVLSE----G 415 (478)
Q Consensus 347 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~l~~----~ 415 (478)
+++.+.....++....+++....+--..++.+.+++.++.-........+..++...++.+++++..+ .
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 34556666777777777666555555666666666643322222245677777777777777766544 1
Q ss_pred Ccc---hhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 037703 416 GSQ---NLGAYANLTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSC 472 (478)
Q Consensus 416 g~~---~~~~~~~~~~~~~v~i~~~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~ 472 (478)
.+. +..-+...+. -++.+..++++... ++|..|..+|..+.+..+.+.++.+.++
T Consensus 412 a~~~~l~~~~~~m~~~-S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVF-SAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1111111111 12335566677665 7899999999999999999999888865
No 36
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.85 E-value=1.3e-05 Score=73.11 Aligned_cols=313 Identities=12% Similarity=0.034 Sum_probs=175.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc--Ch-hHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCC
Q 037703 42 DEVKRLGSIAGPMVAVNLSQYFLQVISVMMVGHL--GE-LFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVAR 118 (478)
Q Consensus 42 ~~~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~--G~-~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~ 118 (478)
..++++.++-.|+.++.++..+...+-+.-+++- .+ +.+|+|+++..+.-++ -.+.. ....++-.++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~-------~~~~igl~~V-- 77 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLS-------MFHHIGLVFV-- 77 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhh-------hhHHHHHHHh--
Confidence 4588999999999999999999988888888874 22 4589999999987654 33322 3334444555
Q ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHH-HHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Q 037703 119 PISQQYRKLGTQMHTAMFCLLLACLPVSLL--WANMGKLL-ILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQV 195 (478)
Q Consensus 119 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~i~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~ 195 (478)
++++++.+..... .....+..++..++ -.+...++ ..++.++++.+.+...+.++...-++.++.....|++--
T Consensus 78 --~s~rsrr~~vl~~-~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik 154 (345)
T PF07260_consen 78 --NSKRSRRKAVLCM-AVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIK 154 (345)
T ss_pred --cchhhhHHHHHHH-HHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhh
Confidence 3333322222211 22222222221222 22233333 455889999999999999999999999999999998885
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCc-chh---HHHHHHHHHHHHHHHH-HHHHhcccchhhcccccHHHHHh
Q 037703 196 QSLVTPMLISSCATVFFHIILCWALVLKFELNN-IGA---ALAIGTSYWLNVLLLG-LYMTFSSACAQTRVQVSMELFQG 270 (478)
Q Consensus 196 ~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~Gi-~g~---a~a~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 270 (478)
+++.......++.-.+.-+++...++.. ++.. ..+ ..+...+..+.+-+.. .++....+.........+.+...
T Consensus 155 ~r~s~iV~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~t 233 (345)
T PF07260_consen 155 HRHSWIVGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSAT 233 (345)
T ss_pred ccceeEeehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChh
Confidence 5555554444444344434444344422 1111 111 1222222222222211 12211121112222222333456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 037703 271 IKEFFLLAIPSAFMVCLEWWSFEFLTLLSGL-LPNPE---LEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNP 346 (478)
Q Consensus 271 ~~~~~~~~lp~~~~~~~~~~~~~i~~~~~~~-lg~~~---~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~ 346 (478)
+++++++..|.+.....+..+--+.+.++++ ++.++ .++|..++.+...-+. .|..+-.-..--.....++.
T Consensus 234 l~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~----y~w~~~~r~~~paf~~~~~~ 309 (345)
T PF07260_consen 234 LQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMP----YGWLTELRAVYPAFDKNNPQ 309 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCc----chhHHhHHhhCchhhccCcc
Confidence 8999999999999999999999999999998 65532 2344333333332222 22222222222111122222
Q ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHHH
Q 037703 347 QAAI--------IAVRAVLFLTVLETVVVSSILY 372 (478)
Q Consensus 347 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 372 (478)
++.. ..+++....++++++..+..++
T Consensus 310 ~~~~~~~~~v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 310 NKLRNCGNPVTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred cccccccCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3332 3667777777777777766554
No 37
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.62 E-value=5.2e-06 Score=84.34 Aligned_cols=208 Identities=10% Similarity=-0.051 Sum_probs=165.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh--c-ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcC
Q 037703 44 VKRLGSIAGPMVAVNLSQYFLQVISVMMVGH--L-GELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPI 120 (478)
Q Consensus 44 ~k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~--~-G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~ 120 (478)
-++++++......+++...+.+--|..++.. + ..++-|.|++++++-++..-.+...+- -+.-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiE--Es~~~~Fsk~l~~~~~ 329 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIE--ESSRLYFSKLLSRDNS 329 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHH--HHHHHHHHHHhcccCc
Confidence 4789999999999999999999999999999 6 788999999999999987667777777 7777888887763321
Q ss_pred c-----cchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 037703 121 S-----QQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQ 194 (478)
Q Consensus 121 ~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~ 194 (478)
. ++.++..+.+...+.+...+++++... ...++.++.+++.+.-....+.+.+++++...|+.+++.+..++.+
T Consensus 330 ~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~ 409 (549)
T PF04506_consen 330 KKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVF 409 (549)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHH
Confidence 1 234667778888888888888888887 8888888888854443334456789999999999999999999999
Q ss_pred hcCch---hHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcc
Q 037703 195 VQSLV---TPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSS 254 (478)
Q Consensus 195 ~~~~~---~~~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~ 254 (478)
+.... ...........++.+..+++++.. ++|..|.-+|.++......+.+..+.++..
T Consensus 410 s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~ 471 (549)
T PF04506_consen 410 SVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRYF 471 (549)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 63222 333333355567778888888865 799999999999999999999988886643
No 38
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.53 E-value=0.0011 Score=63.72 Aligned_cols=407 Identities=12% Similarity=0.037 Sum_probs=204.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH-HHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcCcc
Q 037703 44 VKRLGSIAGPMVAVNLSQYFLQVI-SVMMVGHLGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPISQ 122 (478)
Q Consensus 44 ~k~l~~~~~p~~~~~~~~~~~~~~-d~~~i~~~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~~~ 122 (478)
.-...+.+...+..++...+.++. ++..+.+.+++.+|..++=..+.+ ....-++ -=.........|.+. ++
T Consensus 7 L~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~----sTiLFls--REair~A~l~~gs~~-~d 79 (530)
T KOG2864|consen 7 LESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQ----STILFLS--REAIRLAELRIGSEP-AD 79 (530)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHH----HHHHHhh--HHHHHHHhccCCCCC-Cc
Confidence 344455566667777777777775 555555569999987766544433 2222233 333334444444100 12
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhH--HHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCchh
Q 037703 123 QYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLILMGQDPAI--SSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVT 200 (478)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~ 200 (478)
+..+..+..+.+.-+....+++..-++ +.+....+++ .+.-..-+.+...+...-.+...+.-..|.+-+.+
T Consensus 80 ~~te~~n~~wlS~~L~~~i~~~~i~~w------l~~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~ 153 (530)
T KOG2864|consen 80 TWTEFINLLWLSVPLQTAINVACIYFW------LGFLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQ 153 (530)
T ss_pred cHHHHHHhhhhhhhHHHHHHHHHHHHH------HHHhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344555555555555555555444432 1221111111 01111112222222333333333333334333333
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhh-cCCCcchhHHHHHHHHHHHHHHHHHHHHhccc-c------hhhcccccHHHHH--
Q 037703 201 PMLISSCATVFFHIILCW-ALVLK-FELNNIGAALAIGTSYWLNVLLLGLYMTFSSA-C------AQTRVQVSMELFQ-- 269 (478)
Q Consensus 201 ~~~~~~i~~~~~~i~l~~-~li~~-~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~-- 269 (478)
.-.+...+..++.-+..+ .++.+ ...++.--|+|.........+-.++++.+.+. . .+...-+++...+
T Consensus 154 ~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~ 233 (530)
T KOG2864|consen 154 LRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENER 233 (530)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCc
Confidence 333444444455523332 23323 23455555666555544444422222222222 0 0000000000000
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Q 037703 270 ---GIKEFFLLAIPSAFMVCLEWWSFEFLTLLSGLL---PNPELEASVLSVCLATITTLF-TIPDGLGAAASTRVSNALG 342 (478)
Q Consensus 270 ---~~~~~~~~~lp~~~~~~~~~~~~~i~~~~~~~l---g~~~~~~aa~~i~~~i~~~~~-~~~~~~~~a~~~~vs~~~g 342 (478)
.-++..+.......+.+.-+..+.=+..+++.. .-++. |.|.++++..++.. ++...+-.......+|...
T Consensus 234 ~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~Q--gvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls 311 (530)
T KOG2864|consen 234 GIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQ--GVYDLVSNYGSLLARLIFRPIEESSYIYFARLLS 311 (530)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchh--hHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhh
Confidence 113444444444445555555554444444422 11123 45888999888755 5668888888899999888
Q ss_pred CCChHHHHHHH---HHHHHHHHHHHHHHHHHHHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Q 037703 343 AGNPQAAIIAV---RAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQAVLSE----- 414 (478)
Q Consensus 343 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~l~~----- 414 (478)
+++.|+.|+.. ...++....+++.....-...++.+..+++++.-...-....+.++++..++.+++++..|
T Consensus 312 ~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~ 391 (530)
T KOG2864|consen 312 RDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAV 391 (530)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 88777766554 4445555555444444444455566676654322222244677788888888888766544
Q ss_pred -----cCcch-hhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 037703 415 -----GGSQN-LGAYANLTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSC 472 (478)
Q Consensus 415 -----~g~~~-~~~~~~~~~~~~v~i~~~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~ 472 (478)
..|.. ..+..+.+- +...+++.-.. |..|..+|..+.+.++.+.....+++
T Consensus 392 ~t~~qi~~~n~~mlafSvif-----lilsylL~~~~--~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 392 ATSRQIDKHNKFMLAFSVIF-----LILSYLLIRWF--GLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred ccHHHHHhcccchhHHHHHH-----HHHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 333333332 44566666544 77999999999999998888766654
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.45 E-value=2.5e-05 Score=65.54 Aligned_cols=80 Identities=25% Similarity=0.199 Sum_probs=74.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 037703 173 TVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTF 252 (478)
Q Consensus 173 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~ 252 (478)
+++.+++.++..+.....+.+++.||++.....++++.++|+++++.++ +++|..|+++|+.+++.+...+..+..+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999999999999999998 55999999999999999999999888877
Q ss_pred cc
Q 037703 253 SS 254 (478)
Q Consensus 253 ~~ 254 (478)
+.
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 54
No 40
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=0.00014 Score=69.66 Aligned_cols=205 Identities=10% Similarity=-0.036 Sum_probs=154.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---ChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcCc
Q 037703 45 KRLGSIAGPMVAVNLSQYFLQVISVMMVGHL---GELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPIS 121 (478)
Q Consensus 45 k~l~~~~~p~~~~~~~~~~~~~~d~~~i~~~---G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~~ 121 (478)
++..+......-+.+..++.+-=|.+++... .-++-|.|.+++++-++..-.+...+- -..-...+|... +|++
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIE--Ess~~~FA~~ls-~~~q 315 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIE--ESSYIYFARLLS-RDNQ 315 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhH--HHHHHHHHHHhh-ccch
Confidence 4566667777778888999988899988843 556777788887777766566666676 777777888775 3446
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCChhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCchh
Q 037703 122 QQYRKLGTQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQDPAISSEAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVT 200 (478)
Q Consensus 122 ~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~ 200 (478)
+|.+++.......+.....++++++.. ...+++.+.+++.+.-....+...+++++...|+.+++.+..++..+.....
T Consensus 316 e~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~ 395 (530)
T KOG2864|consen 316 ENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSR 395 (530)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHH
Confidence 777888888888999999999888877 8888888888865543334455679999999999999999999998633222
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhcc
Q 037703 201 P---MLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFSS 254 (478)
Q Consensus 201 ~---~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~~ 254 (478)
. --...++..+..++++++++.. +|..|.-+|.++...+..+....++++..
T Consensus 396 qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~y 450 (530)
T KOG2864|consen 396 QIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHYY 450 (530)
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1222355667788999999976 88899999998888888777777766543
No 41
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=97.83 E-value=0.0085 Score=55.67 Aligned_cols=180 Identities=15% Similarity=0.163 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHH-HHHHHhcCCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 037703 282 AFMVCLEWWSFEF-LTLLSGLLPNPELEASVLSVCLATITTLFTI-PDGLGAAASTRVSNALGAGNPQAAIIAVRAVLFL 359 (478)
Q Consensus 282 ~~~~~~~~~~~~i-~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~-~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~ 359 (478)
...+........+ ..++...+|+++ .+.|+....+.++...+ -.|++++..-.+++...+ .++.++........
T Consensus 9 ~~~~~~~~~~~~~~~~il~r~l~~~~--~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~~~~~~ 84 (273)
T PF01943_consen 9 FLSNILSALIGFITIPILARYLGPEE--YGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFSSVLFL 84 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHH--hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHHHHHHH
Confidence 3334444333333 344555667744 56689999988887776 488888887777776543 23333343333333
Q ss_pred HHHHHHHHHHHHHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHH
Q 037703 360 TVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQAVLSEGGSQNLGAYANLTAYYHFGIPVAAA 439 (478)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~v~i~~~~~ 439 (478)
..+.++.......+.. .+.+++.........................+++.++.+......+.... +.+...+.
T Consensus 85 ~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 158 (273)
T PF01943_consen 85 LLIFSLIFLLILLIAS-----FFGNPSLSLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL-LSLLLILL 158 (273)
T ss_pred HHHHHHHHHHHHHHHH-----HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3333322222222212 33333222222222222222333444456788888888888888887743 33434433
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 037703 440 LGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSC 472 (478)
Q Consensus 440 ~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~ 472 (478)
+... ..++.+...+..++..+..+...+..+|
T Consensus 159 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 159 LLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 3358999999999999998888877775
No 42
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.49 E-value=0.054 Score=49.60 Aligned_cols=166 Identities=17% Similarity=0.262 Sum_probs=97.5
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 037703 292 FEFLTLLSGLLPNPELEASVLSVCLATITTLFTIP-DGLGAAASTRVSNALGAGNPQAAIIAVRAVLFLTVLETVVVSSI 370 (478)
Q Consensus 292 ~~i~~~~~~~lg~~~~~~aa~~i~~~i~~~~~~~~-~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (478)
+.....+...+|+++ .+.|+....+.++...+. .|+.+...- ..++|.++.++..+.......+..+...++
T Consensus 5 f~~~~~lar~l~~~~--~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (251)
T PF13440_consen 5 FLFLILLARYLGPED--FGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL 77 (251)
T ss_pred HHHHHHHHHHCCHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666678754 566888888888777663 555444433 234566666666666655544444433333
Q ss_pred HHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Q 037703 371 LYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQAVLSEGGSQNLGAYANLTAYYHFGIPVAAALGFWLKMRGEG 450 (478)
Q Consensus 371 ~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~g~~g 450 (478)
...+...+ ++++..................+..+..+++.+|.+............. +.....+. ..+.+..+
T Consensus 78 ----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~ 150 (251)
T PF13440_consen 78 ----AILIAYFF-GDPELFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLR-LLLLVLLL-YLGLNLWS 150 (251)
T ss_pred ----HHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-HHHHHHHH-HHHhhHHH
Confidence 23333334 3444333232233333444455556788899999999888888774333 22333332 33338889
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 037703 451 LWIGIQVGAFVQIVLLFLITS 471 (478)
Q Consensus 451 ~~~a~~i~~~v~~~~~~~~~~ 471 (478)
..++..++..+..+..+...+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 151 ILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999988877766444
No 43
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.06 E-value=0.0036 Score=52.30 Aligned_cols=64 Identities=16% Similarity=0.116 Sum_probs=54.9
Q ss_pred HHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcc
Q 037703 407 GLQAVLSEGGSQNLGAYANLTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSCQ 473 (478)
Q Consensus 407 ~~~~~l~~~g~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~~ 473 (478)
..+.++++.||+|..++.++++ .++++++.+.+ .+++|..|+++++.+++.+...+..+..+|.
T Consensus 17 ~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~k~ 80 (146)
T PF14667_consen 17 PLGSILQAMGKTKWPFIITLIG-AIVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVRKK 80 (146)
T ss_pred HHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888999999999999998 66777777666 5677999999999999999999999888774
No 44
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=96.79 E-value=0.45 Score=44.27 Aligned_cols=151 Identities=8% Similarity=-0.026 Sum_probs=99.8
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 037703 269 QGIKEFFLLAIPSAFMVCLEWWSFEFLTLLSGL-LPNPELEASVLSVCLATITTLFTIPDGLGAAASTRVSNALGAGNPQ 347 (478)
Q Consensus 269 ~~~~~~~~~~lp~~~~~~~~~~~~~i~~~~~~~-lg~~~~~~aa~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~ 347 (478)
...+++.+.-+|.+++.....++-.+.+.-+++ ..++....|+|+++..+.-++-.+...+-+.....+.. +.+
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~rs 82 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KRS 82 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hhh
Confidence 346788899999999988877777777666665 33433457999999999999998888888877776643 222
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHhchhH-HHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcchhhHHH
Q 037703 348 AAIIAVRAVLFLTVLETVV-VSSILYASRHV-FGYIFSNDQEVVDYVTSMAPLICLCVILNGLQAVLSE-GGSQNLGAYA 424 (478)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~l~~-~g~~~~~~~~ 424 (478)
+-+ ........+.+..+. ..+..--+.+. +..++.-|+++.+.+...+.++....+++++....+| .=|.|.+..+
T Consensus 83 rr~-~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV 161 (345)
T PF07260_consen 83 RRK-AVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIV 161 (345)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEe
Confidence 211 111112222222111 22223344443 4477788899999999999999999999999888888 2244444433
Q ss_pred H
Q 037703 425 N 425 (478)
Q Consensus 425 ~ 425 (478)
.
T Consensus 162 ~ 162 (345)
T PF07260_consen 162 G 162 (345)
T ss_pred e
Confidence 3
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=95.28 E-value=2.9 Score=39.99 Aligned_cols=138 Identities=12% Similarity=0.158 Sum_probs=83.6
Q ss_pred HHHHHhhhhhhhHHHHHHhhccCCcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHHHHHHHHH
Q 037703 95 FSLLCFRLLYFLLQASCSYRIVARPISQQYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLILMGQDPAISSEAGKFTV 174 (478)
Q Consensus 95 ~~~~~gl~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~ 174 (478)
+.+..|+. ...++.+|...= +|+.+++.....-...+....+..++.+ +-...++.... |=.
T Consensus 74 ~IiTgg~q--~iiTRfiSD~lF----~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~si~-----yk~ 135 (467)
T COG4267 74 QIITGGFQ--LIITRFISDCLF----EKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYSIV-----YKI 135 (467)
T ss_pred HHHhhhHH--HHHHHHHHHHHH----HHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchhHH-----HHH
Confidence 44567777 888888888777 7777777776655544444444444321 11122222221 111
Q ss_pred HHHhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 037703 175 WLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTFS 253 (478)
Q Consensus 175 i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~~ 253 (478)
.....+..++..=....++.+.++-+....+-.++.++..++..++- +.++.|..++..++..+.......+..+.
T Consensus 136 l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~ 211 (467)
T COG4267 136 LACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRY 211 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 12223333334444455566777777777766677777666665554 46999999999999998888777766554
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=73.23 E-value=94 Score=30.21 Aligned_cols=145 Identities=17% Similarity=0.168 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHhhcCCcHHHHHH
Q 037703 313 SVCLATITTLFTIP-DGLGAAASTRVSNALGAGNPQAAIIAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDY 391 (478)
Q Consensus 313 ~i~~~i~~~~~~~~-~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~ 391 (478)
-.......+++++. -+++-..+=.+|+.+=+||.+++...+.-...+....+...+.++++. .++++.
T Consensus 63 lssv~Y~~ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~--------~~~~si--- 131 (467)
T COG4267 63 LSSVTYCFIFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFV--------NNQYSI--- 131 (467)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhh--------cCchhH---
Confidence 33444445555555 445555555678877778888887776666666666665555322211 222221
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 037703 392 VTSMAPLICLCVI--LNGLQAVLSEGGSQNLGAYANLTAYYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLI 469 (478)
Q Consensus 392 ~~~~l~i~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~ 469 (478)
....+.......+ ..-....+++++|-|.....-.++ ..+...++..+- +.+..|.-++.-+|......+...+
T Consensus 132 ~yk~l~~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~ 207 (467)
T COG4267 132 VYKILACALFVGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFY 207 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHH
Confidence 2222222211111 111234567788888888888877 555566666554 4589999999999999887777665
Q ss_pred HHc
Q 037703 470 TSC 472 (478)
Q Consensus 470 ~~~ 472 (478)
..|
T Consensus 208 Ilr 210 (467)
T COG4267 208 ILR 210 (467)
T ss_pred HHH
Confidence 543
No 47
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=48.28 E-value=1.1e+02 Score=22.51 Aligned_cols=38 Identities=18% Similarity=0.268 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 037703 329 LGAAASTRVSNALGAGNPQAAIIAVRAVLFLTVLETVV 366 (478)
Q Consensus 329 ~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 366 (478)
++...+..+...+.+||++++++..+++.+++.+-.+.
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 34444556788888999999999999988888665443
No 48
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=40.99 E-value=1.5e+02 Score=28.23 Aligned_cols=54 Identities=11% Similarity=0.111 Sum_probs=29.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCchh--------HHHHHHHHHHHHHHHHHHHHHHccCC
Q 037703 419 NLGAYANLTAYYHFGIPVAAALGFWLKMRGE--------GLWIGIQVGAFVQIVLLFLITSCQNW 475 (478)
Q Consensus 419 ~~~~~~~~~~~~~v~i~~~~~~~~~~~~g~~--------g~~~a~~i~~~v~~~~~~~~~~~~~w 475 (478)
+..-..++++ .+.+|+.++.+.+. +... -.+........+.++.+++++||++|
T Consensus 256 ~~mk~LTvvt--~IflP~t~IaGiyG-MNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 256 EIMKILTVVS--TIFIPLTFIAGIYG-MNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHh-CCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444445544 25577777665531 2111 22333444445556667888999999
No 49
>PF14248 DUF4345: Domain of unknown function (DUF4345)
Probab=40.29 E-value=1.9e+02 Score=23.04 Aligned_cols=120 Identities=11% Similarity=-0.064 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhchhHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCcchhhHHHHHHH
Q 037703 351 IAVRAVLFLTVLETVVVSSILYASRHVFGYIFSNDQEVVDYVTSMAPLICLCVILNGLQAVLSE--GGSQNLGAYANLTA 428 (478)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~l~i~~~~~~~~~~~~~l~~--~g~~~~~~~~~~~~ 428 (478)
+..+..+.++.+..+..++...+.|+......+..+..........+.+....+..++...... .++.+.........
T Consensus 2 ~~~~~~l~~~~l~~~~~Gl~~~~~p~~~~~~~~~~~~~~~~~~s~~R~~~G~~~g~Gl~~l~~~~~~~~~~~al~~l~~~ 81 (124)
T PF14248_consen 2 RILRIFLILSALVFIGIGLAYFLAPSSTAPWFGGVLANAAALDSEFRAYGGLYLGLGLLLLWAAFKPEYRRPALRLLALF 81 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCcHHHHhhcccccCCchhHHHHHHHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHH
Confidence 4556667777777788888888888887776643221112233444444444444444333333 33333333333322
Q ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHc
Q 037703 429 YYHFGIPVAAALGFWLKMRGEGLWIGIQVGAFVQIVLLFLITSC 472 (478)
Q Consensus 429 ~~~v~i~~~~~~~~~~~~g~~g~~~a~~i~~~v~~~~~~~~~~~ 472 (478)
. ....+.=+.....+--.....+...+.|.+...+.++..+|
T Consensus 82 ~--~~~~lgRlis~~~dG~p~~~~~~~l~~Elv~~~l~~~~l~~ 123 (124)
T PF14248_consen 82 I--GGGGLGRLISLALDGPPSPFLWVALIFELVLAPLLLWWLRR 123 (124)
T ss_pred H--HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11222112222222223445556677788887777777665
No 50
>PRK09546 zntB zinc transporter; Reviewed
Probab=35.59 E-value=1.1e+02 Score=29.40 Aligned_cols=43 Identities=14% Similarity=0.081 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhc-CC---c----hhHHHHHHHHHHHHHHHHHHHHHHccCC
Q 037703 432 FGIPVAAALGFWL-KM---R----GEGLWIGIQVGAFVQIVLLFLITSCQNW 475 (478)
Q Consensus 432 v~i~~~~~~~~~~-~~---g----~~g~~~a~~i~~~v~~~~~~~~~~~~~w 475 (478)
+.+|+.++.+.+. ++ + -.|. +...+..++.++.+++++||++|
T Consensus 273 IflPlT~IaGiyGMNf~~mPel~~~~gy-~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 273 VFLPTTFLTGLFGVNLGGIPGGGWPFGF-SIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHhhhccccCCCCCcCCcchH-HHHHHHHHHHHHHHHHHHHhccc
Confidence 4568877765531 11 1 1233 33444455566667788999988
No 51
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=33.52 E-value=74 Score=29.07 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=14.8
Q ss_pred CCCCCccccccchhhhccccccc
Q 037703 5 LLGKDEVESREDLTVLLAKDEVE 27 (478)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~ 27 (478)
.+.++|++.|.+.+++-.++++.
T Consensus 53 kq~~ee~~~r~~~~vL~~rrp~~ 75 (360)
T KOG3966|consen 53 KQVKEEPPKRVERTVLMMRRPKQ 75 (360)
T ss_pred HHhhhcCCchHHHHHHhhcCccc
Confidence 34566677777777777666544
No 52
>PF14184 YrvL: Regulatory protein YrvL
Probab=33.43 E-value=2.6e+02 Score=22.71 Aligned_cols=101 Identities=11% Similarity=0.094 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHcCCChhHHH-HHHHHHHHHHhhHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Q 037703 134 AMFCLLLACLPVSLLWANMGKLLILMGQDPAISS-EAGKFTVWLIPALFGYGTLQPLVRYLQVQSLVTPMLISSCATVFF 212 (478)
Q Consensus 134 ~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~ 212 (478)
.......+.++.++..+...-+.+++|.+.+-.. ..--.+.....+.|+..+...+...+.-.+..+.... .....+
T Consensus 7 ~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~--~l~~~i 84 (132)
T PF14184_consen 7 FIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFI--LLAFII 84 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHH--HHHHHH
Confidence 3334444444444445566778888876644332 2222334446677777777777777665544444443 566677
Q ss_pred HHHHHHHHHhhcCCCcchhHHHHH
Q 037703 213 HIILCWALVLKFELNNIGAALAIG 236 (478)
Q Consensus 213 ~i~l~~~li~~~~~Gi~g~a~a~~ 236 (478)
...+++..++.-+.=+.+..+++.
T Consensus 85 d~~~t~~~i~~aD~~m~sI~is~~ 108 (132)
T PF14184_consen 85 DFLFTWITIYTADELMESISISTL 108 (132)
T ss_pred HHHHHHHHHHHHHHHhcceeeCcH
Confidence 788888777653333444444443
No 53
>TIGR02848 spore_III_AC stage III sporulation protein AC. Members of this protein family are designated SpoIIIAC, part of the spoIIIA operon of sporulation genes whose mutant phenotype is linked to sporulation stage III. Members of this family are encoded by the genome of a species if and only if that species is capable of endospore formation, as in Bacillus subtilis. The molecular function of this small, probable integral membrane protein is unknown.
Probab=30.87 E-value=1.8e+02 Score=20.14 Aligned_cols=35 Identities=9% Similarity=0.276 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHH
Q 037703 394 SMAPLICLCVILNGLQAVLSEGGSQNLGAYANLTA 428 (478)
Q Consensus 394 ~~l~i~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 428 (478)
..+++...+.+...++.++...||.......++.+
T Consensus 5 lIFkIAgVGIlvavl~~vLk~sGkee~A~~~tLaG 39 (64)
T TIGR02848 5 LIFKIAGVGILVAVIHTILKQSGKEEQAQMVTLAG 39 (64)
T ss_pred hhhhHhhHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 45677778888888899999999999999999988
No 54
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=30.81 E-value=77 Score=25.37 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccCC
Q 037703 448 GEGLWIGIQVGAFVQIVLLFLITSCQNW 475 (478)
Q Consensus 448 ~~g~~~a~~i~~~v~~~~~~~~~~~~~w 475 (478)
+.|+.+|...+.+...++.++.++|++.
T Consensus 66 i~~Ii~gv~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555544433344444444433
No 55
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=29.67 E-value=2.9e+02 Score=24.73 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=19.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCC
Q 037703 123 QYRKLGTQMHTAMFCLLLACLPVSLLWANMGKLLILMGQD 162 (478)
Q Consensus 123 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~ 162 (478)
+++.....+..++...+++-++.++++.+..++..+++.+
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v~ 181 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHVD 181 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhHH
Confidence 4444444444444444333333344455566666666543
No 56
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=28.95 E-value=3.1e+02 Score=26.17 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh-cCCc-h------hHHHHHHHHHHHHHHHHHHHHHHccCC
Q 037703 420 LGAYANLTAYYHFGIPVAAALGFW-LKMR-G------EGLWIGIQVGAFVQIVLLFLITSCQNW 475 (478)
Q Consensus 420 ~~~~~~~~~~~~v~i~~~~~~~~~-~~~g-~------~g~~~a~~i~~~v~~~~~~~~~~~~~w 475 (478)
..-+.++++ ++.+|..++.+.+ .+++ . .|.++ ......+.++..++++||++|
T Consensus 255 ~mk~lTv~s--~if~pptliagiyGMNf~~mP~~~~~~g~~~-~l~~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 255 IIKIFSVVS--VVFLPPTLVASSYGMNFEFMPELKWSFGYPG-AIILMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHH--HHHHHHHHHHhhcccccCCCCCCCCcHHHHH-HHHHHHHHHHHHHHHHHHccc
Confidence 344444444 3556777666543 1111 1 23333 333444455566788999998
No 57
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=28.57 E-value=1.9e+02 Score=27.64 Aligned_cols=52 Identities=17% Similarity=0.353 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh-cCCc-------hhHHHHHHHHHHHHHHHHHHHHHHccCC
Q 037703 421 GAYANLTAYYHFGIPVAAALGFW-LKMR-------GEGLWIGIQVGAFVQIVLLFLITSCQNW 475 (478)
Q Consensus 421 ~~~~~~~~~~~v~i~~~~~~~~~-~~~g-------~~g~~~a~~i~~~v~~~~~~~~~~~~~w 475 (478)
.-+.++++ .+.+|..++.+.+ .+++ -.|.|++ ++..++.+++.++++||++|
T Consensus 262 mk~LTi~s--~iflPpTlIagiyGMNf~~mPel~~~~Gy~~~-l~~m~~~~~~~~~~frrk~W 321 (322)
T COG0598 262 MKILTIVS--TIFLPPTLITGFYGMNFKGMPELDWPYGYPIA-LILMLLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHHHHH--HHHHhhHHHHcccccCCCCCcCCCCcccHHHH-HHHHHHHHHHHHHHHHhcCc
Confidence 33344444 2457777766654 1222 1144444 44455666777788899988
No 58
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=28.41 E-value=1.5e+02 Score=29.38 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=23.1
Q ss_pred cchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 037703 35 VMADVYIDEVKRLGSIAGPMVAVNLSQYFLQ 65 (478)
Q Consensus 35 ~~~~~~~~~~k~l~~~~~p~~~~~~~~~~~~ 65 (478)
.+.++..+..|+++.+.+|+.+..+++.+.+
T Consensus 233 ~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~In 263 (402)
T PF02487_consen 233 LSFKEKLKRLKPLLWYMIPLFLVYFAEYFIN 263 (402)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556678888889999998888887653
No 59
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=25.28 E-value=92 Score=28.81 Aligned_cols=31 Identities=16% Similarity=0.346 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH-Hc--cCCCCC
Q 037703 448 GEGLWIGIQVGAFVQIVLLFLIT-SC--QNWKKQ 478 (478)
Q Consensus 448 ~~g~~~a~~i~~~v~~~~~~~~~-~~--~~w~~~ 478 (478)
..|++.-.++-..|..+++++++ || +.||+|
T Consensus 260 Pcgiaalvllil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 260 PYGIAALVLIILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 35555555555555555555555 33 478875
No 60
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=22.31 E-value=6.4e+02 Score=23.45 Aligned_cols=45 Identities=16% Similarity=-0.102 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 037703 206 SCATVFFHIILCWALVLKFELNNIGAALAIGTSYWLNVLLLGLYMTF 252 (478)
Q Consensus 206 ~i~~~~~~i~l~~~li~~~~~Gi~g~a~a~~i~~~~~~~~~~~~~~~ 252 (478)
++++.++=-+.|.....- .+..|.+.|..+++.-..+-.+.-...
T Consensus 198 nil~G~~w~ignl~~~is--~~~~G~a~af~lSQ~~vvIStlgGI~i 242 (269)
T PF06800_consen 198 NILTGLIWGIGNLFYLIS--AQKNGVATAFTLSQLGVVISTLGGIFI 242 (269)
T ss_pred hhHHHHHHHHHHHHHHHh--HHhccchhhhhHHhHHHHHHHhhhheE
Confidence 344444444444444422 568899999999998876666555543
No 61
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=21.90 E-value=4.2e+02 Score=25.86 Aligned_cols=96 Identities=14% Similarity=0.137 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-cChhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhccCCcCccchhHHH
Q 037703 50 IAGPMVAVNLSQYFLQVISVMMVGH-LGELFLSSTAIAISFSAVTGFSLLCFRLLYFLLQASCSYRIVARPISQQYRKLG 128 (478)
Q Consensus 50 ~~~p~~~~~~~~~~~~~~d~~~i~~-~G~~~~a~~~~~~~i~~~~~~~~~~gl~~~~a~~~~vs~~~g~~~~~~~~~~~~ 128 (478)
++.-++..++++.+.+.+-+.+.=+ +|+..++.. +...++. ..+ ..-.+++.++ +-.+|+..
T Consensus 59 ig~iLIGNNLvNilasalaT~~~irl~Gd~GvaIA---t~~mT~v-ilv---------FaEVlPKt~A----a~~perva 121 (423)
T COG4536 59 IGTILIGNNLVNILASALATILGIRLYGDAGVAIA---TGVLTFV-ILV---------FAEVLPKTIA----ALYPERVA 121 (423)
T ss_pred eeeeeecccHHHHHHHHHHHHHHHHHhccchHHHH---HHHHHHH-HHH---------HHHhcchHHh----hhChhhhh
Confidence 4555666777777777665555444 588776544 3333332 111 2233355566 77888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCC
Q 037703 129 TQMHTAMFCLLLACLPVSLL-WANMGKLLILMGQD 162 (478)
Q Consensus 129 ~~~~~~l~~~~~~~~~~~~~-~~~~~~i~~~~~~~ 162 (478)
...+..+....-+.-|+..+ -.+.+-++++++.+
T Consensus 122 ~~~s~~l~~l~~l~~Plv~lln~it~~llrl~gi~ 156 (423)
T COG4536 122 LPSSFILAILVRLFGPLVWLLNAITRRLLRLLGIN 156 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 88888777777777777665 77788888888643
No 62
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=20.64 E-value=3.6e+02 Score=23.19 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=19.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcc
Q 037703 228 NIGAALAIGTSYWLNVLLLGLYMTFSS 254 (478)
Q Consensus 228 i~g~a~a~~i~~~~~~~~~~~~~~~~~ 254 (478)
+.|...++.+++.+..++...|.++..
T Consensus 136 ~s~s~~~~ti~yIiL~iLf~~Ya~nl~ 162 (189)
T PF05313_consen 136 VSGSSGAYTISYIILAILFCIYAFNLT 162 (189)
T ss_pred hhHhHHHHHHHHHHHHHHHHHheeecc
Confidence 446677888888888877776665443
No 63
>TIGR00765 yihY_not_rbn YihY family protein (not ribonuclease BN). Members of this subfamily include the largely uncharacterized BrkB (Bordetella resist killing by serum B) from Bordetella pertussis. Some members have an additional C-terminal domain. Paralogs from E. coli (yhjD) and Mycobactrium tuberculosis (Rv3335c) are part of a smaller, related subfamily that form their own cluster.
Probab=20.24 E-value=6.7e+02 Score=22.91 Aligned_cols=12 Identities=0% Similarity=-0.238 Sum_probs=6.8
Q ss_pred hhHHHHHHhhcc
Q 037703 105 FLLQASCSYRIV 116 (478)
Q Consensus 105 ~a~~~~vs~~~g 116 (478)
.+...-..+.++
T Consensus 101 ~~l~~~ln~i~~ 112 (259)
T TIGR00765 101 NNIDSTLNKIWR 112 (259)
T ss_pred HHHHHHHHHHhC
Confidence 445555566666
Done!