Query 037703
Match_columns 478
No_of_seqs 196 out of 1913
Neff 10.0
Searched_HMMs 13730
Date Mon Mar 25 05:25:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037703.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037703hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nkzb_ f.3.1.1 (B:) Light-har 10.3 1.4E+02 0.01 16.1 3.6 34 345-378 7-40 (41)
2 d1lghb_ f.3.1.1 (B:) Light-har 7.1 1.3E+02 0.0097 16.7 2.1 33 345-377 10-42 (43)
3 d2iuba2 f.17.3.1 (A:286-349) M 6.8 1.7E+02 0.012 17.5 2.8 10 432-441 15-24 (64)
4 d1ijdb_ f.3.1.1 (B:) Light-har 4.7 2.9E+02 0.021 14.7 3.6 32 345-376 8-39 (40)
5 d1xmeb2 f.17.2.1 (B:3-36) Bact 4.2 2.7E+02 0.02 13.6 3.1 18 450-467 14-31 (34)
6 d1su0b_ d.224.1.2 (B:) IscU ho 4.0 5.9E+02 0.043 17.4 4.9 29 328-356 61-89 (136)
7 d1ppjd2 f.23.11.1 (D:196-241) 3.9 2.3E+02 0.017 15.9 1.7 10 466-475 23-32 (46)
8 d1pw4a_ f.38.1.1 (A:) Glycerol 3.2 1E+03 0.075 18.9 39.0 29 443-471 404-432 (447)
9 d3cx5d2 f.23.11.1 (D:261-307) 3.1 3E+02 0.022 15.5 1.7 9 467-475 24-32 (47)
10 d1xjsa_ d.224.1.2 (A:) NifU {B 3.1 7.3E+02 0.053 17.2 4.6 30 328-357 67-96 (147)
No 1
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=10.31 E-value=1.4e+02 Score=16.14 Aligned_cols=34 Identities=6% Similarity=-0.075 Sum_probs=26.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Q 037703 345 NPQAAIIAVRAVLFLTVLETVVVSSILYASRHVF 378 (478)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 378 (478)
+.+++.+....+.+....+.++.=++.+...|++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4577888888899988888887777777666653
No 2
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=7.14 E-value=1.3e+02 Score=16.67 Aligned_cols=33 Identities=6% Similarity=0.057 Sum_probs=21.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhH
Q 037703 345 NPQAAIIAVRAVLFLTVLETVVVSSILYASRHV 377 (478)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (478)
+.++.-+.+..++.....+.++.=++.+..+|+
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345566677777777777776666666555443
No 3
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=6.83 E-value=1.7e+02 Score=17.49 Aligned_cols=10 Identities=20% Similarity=0.354 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 037703 432 FGIPVAAALG 441 (478)
Q Consensus 432 v~i~~~~~~~ 441 (478)
+.+|+.++-.
T Consensus 15 iflP~t~i~g 24 (64)
T d2iuba2 15 IFMPLTFIAG 24 (64)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 3455554443
No 4
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=4.70 E-value=2.9e+02 Score=14.72 Aligned_cols=32 Identities=3% Similarity=-0.054 Sum_probs=22.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhchh
Q 037703 345 NPQAAIIAVRAVLFLTVLETVVVSSILYASRH 376 (478)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (478)
+.+++.+++..+.+....+.++.=++.+...+
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tP 39 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLTP 39 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcCC
Confidence 45677888888888888887776666555443
No 5
>d1xmeb2 f.17.2.1 (B:3-36) Bacterial ba3 type cytochrome c oxidase subunit II {Thermus thermophilus [TaxId: 274]}
Probab=4.17 E-value=2.7e+02 Score=13.64 Aligned_cols=18 Identities=11% Similarity=0.433 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 037703 450 GLWIGIQVGAFVQIVLLF 467 (478)
Q Consensus 450 g~~~a~~i~~~v~~~~~~ 467 (478)
--|++..+++...++.++
T Consensus 14 kgwlafslamlfvfiali 31 (34)
T d1xmeb2 14 KGWLAFSLAMLFVFIALI 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 346666666665555444
No 6
>d1su0b_ d.224.1.2 (B:) IscU homolog SPy0289 {Streptococcus pyogenes [TaxId: 1314]}
Probab=4.05 E-value=5.9e+02 Score=17.44 Aligned_cols=29 Identities=14% Similarity=0.196 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHH
Q 037703 328 GLGAAASTRVSNALGAGNPQAAIIAVRAV 356 (478)
Q Consensus 328 ~~~~a~~~~vs~~~g~~~~~~~~~~~~~~ 356 (478)
++++|+.+++++..-.++.+++++.....
T Consensus 61 ai~~ASasil~e~i~gk~~~e~~~l~~~~ 89 (136)
T d1su0b_ 61 TISTASSSMMTDAVIGKSKEEALALADIF 89 (136)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 57888899999988888888887765543
No 7
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.88 E-value=2.3e+02 Score=15.90 Aligned_cols=10 Identities=20% Similarity=0.561 Sum_probs=5.2
Q ss_pred HHHHHHccCC
Q 037703 466 LFLITSCQNW 475 (478)
Q Consensus 466 ~~~~~~~~~w 475 (478)
+.++.+|..|
T Consensus 23 l~yy~KR~~W 32 (46)
T d1ppjd2 23 LVYAMKRHKW 32 (46)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 3455555555
No 8
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.24 E-value=1e+03 Score=18.93 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=16.9
Q ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHH
Q 037703 443 WLKMRGEGLWIGIQVGAFVQIVLLFLITS 471 (478)
Q Consensus 443 ~~~~g~~g~~~a~~i~~~v~~~~~~~~~~ 471 (478)
..+.|..+.++.......+..++++...+
T Consensus 404 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 404 VDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777666666655555555554443
No 9
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.10 E-value=3e+02 Score=15.47 Aligned_cols=9 Identities=11% Similarity=0.294 Sum_probs=4.7
Q ss_pred HHHHHccCC
Q 037703 467 FLITSCQNW 475 (478)
Q Consensus 467 ~~~~~~~~w 475 (478)
.++++|.+|
T Consensus 24 ~~y~KR~kW 32 (47)
T d3cx5d2 24 SIWVKKFKW 32 (47)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 345555555
No 10
>d1xjsa_ d.224.1.2 (A:) NifU {Bacillus subtilis [TaxId: 1423]}
Probab=3.08 E-value=7.3e+02 Score=17.21 Aligned_cols=30 Identities=10% Similarity=0.203 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHH
Q 037703 328 GLGAAASTRVSNALGAGNPQAAIIAVRAVL 357 (478)
Q Consensus 328 ~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~ 357 (478)
++++|..+++++..-.++.+++.+......
T Consensus 67 ai~~ASasil~e~~~gk~~~~a~~l~~~~~ 96 (147)
T d1xjsa_ 67 SISMASASMMTQAIKGKDIETALSMSKIFS 96 (147)
T ss_dssp HHHHHHHHHHHHHHTTSBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 578888899999888888888877765443
Done!