Query 037704
Match_columns 365
No_of_seqs 236 out of 1374
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:26:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037704.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037704hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hkr_A Calcium release-activat 7.5 1.6E+02 0.0055 26.1 1.7 32 13-44 128-159 (214)
2 1r4p_B Sltii B subunit, shiga- 6.8 61 0.0021 23.2 -1.1 12 201-212 24-35 (70)
3 2f8e_A VPG protein; RNA-depend 5.3 1.6E+02 0.0053 17.2 0.2 13 98-110 3-15 (26)
4 1c4q_A Protein (shiga-like tox 5.3 83 0.0028 22.4 -1.1 12 201-212 25-36 (69)
5 3dvk_B Voltage-dependent R-typ 5.1 2.1E+02 0.0073 16.4 0.7 13 197-210 7-19 (23)
6 2kdx_A HYPA, hydrogenase/ureas 4.9 3.5E+02 0.012 21.1 2.2 22 252-290 1-22 (119)
7 2pfc_A Hypothetical protein RV 4.6 2.8E+02 0.0096 23.9 1.4 12 195-206 100-111 (183)
8 1sdi_A ORF-23, hypothetical pr 3.8 2.8E+02 0.0097 24.6 0.8 11 206-216 185-195 (213)
9 3dve_B Voltage-dependent N-typ 3.6 3.3E+02 0.011 15.6 0.7 9 201-210 10-18 (23)
10 2i2j_A Signaling peptide UA159 3.6 6.4E+02 0.022 14.3 1.9 18 200-218 2-19 (26)
No 1
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=7.47 E-value=1.6e+02 Score=26.13 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhcCCCCchhhhhhhhchhhh
Q 037704 13 ILTTTCLTYCYYIPSKIPSGTSRLLSLLPIFY 44 (365)
Q Consensus 13 ~~~~~~l~y~ky~~~~~~~g~~rl~~~~p~~~ 44 (365)
+..++.+||.|+++-..++++.--.-..|+..
T Consensus 128 L~evall~WVKF~~~~~~aa~~~t~vliPv~i 159 (214)
T 4hkr_A 128 LLEIAILCWVKFYDLSRRAAWSATVVLIPVMI 159 (214)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHhheEEeecCCcHHHHHHHHHHHHHHH
Confidence 35566899999998665555444333445444
No 2
>1r4p_B Sltii B subunit, shiga-like toxin type II B subunit; AB5 toxin; HET: 1PS; 1.77A {Escherichia coli} SCOP: b.40.2.1 PDB: 2ga4_B* 3mxg_A* 2bos_A* 1qoh_A*
Probab=6.82 E-value=61 Score=23.15 Aligned_cols=12 Identities=42% Similarity=1.248 Sum_probs=9.7
Q ss_pred ChhhhhhhhhhH
Q 037704 201 SLQDFWGRRWNL 212 (365)
Q Consensus 201 Sl~dFWGrRWH~ 212 (365)
+=+|+|-.|||.
T Consensus 24 ~gkeywt~rwnl 35 (70)
T 1r4p_B 24 DGKEYWTSRWNL 35 (70)
T ss_dssp TTEEEEECCTTH
T ss_pred CCeeeeecccch
Confidence 346899999996
No 3
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=5.33 E-value=1.6e+02 Score=17.17 Aligned_cols=13 Identities=8% Similarity=-0.033 Sum_probs=9.3
Q ss_pred HhcccccCCCCCC
Q 037704 98 ACLPIKLKTNNTN 110 (365)
Q Consensus 98 ~agPI~r~~~~~~ 110 (365)
.+||.+|++..+-
T Consensus 3 yagplerq~plkv 15 (26)
T 2f8e_A 3 YAGPLERQRPLKV 15 (26)
T ss_pred cCCchhhcCccee
Confidence 4789998876543
No 4
>1c4q_A Protein (shiga-like toxin I subunit B); receptor binding, protein-carbohydrate recognition, OB-fold; HET: GLA GAL BGC; 1.52A {Escherichia coli} SCOP: b.40.2.1 PDB: 1d1i_A* 1czw_A* 1d1k_A* 2xsc_A 1bos_A 1dm0_B 1qnu_A* 1r4q_B 2c5c_A* 1bov_A 4ull_A 1c48_A 1cqf_A* 1czg_A
Probab=5.33 E-value=83 Score=22.38 Aligned_cols=12 Identities=25% Similarity=0.199 Sum_probs=9.6
Q ss_pred ChhhhhhhhhhH
Q 037704 201 SLQDFWGRRWNL 212 (365)
Q Consensus 201 Sl~dFWGrRWH~ 212 (365)
+=+|+|-.|||.
T Consensus 25 ~gkeywt~rwnl 36 (69)
T 1c4q_A 25 GDKELATNRANL 36 (69)
T ss_dssp TTEEEEECCTTH
T ss_pred cCeeeeecccch
Confidence 346899999996
No 5
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=5.13 E-value=2.1e+02 Score=16.38 Aligned_cols=13 Identities=15% Similarity=0.572 Sum_probs=7.5
Q ss_pred hhcCChhhhhhhhh
Q 037704 197 YLSTSLQDFWGRRW 210 (365)
Q Consensus 197 ~~a~Sl~dFWGrRW 210 (365)
|.+-=++|+| |++
T Consensus 7 YA~llI~d~~-r~~ 19 (23)
T 3dvk_B 7 YAAMMIMDYY-KQS 19 (26)
T ss_dssp HHHHHHHHHH-HHH
T ss_pred HHHHHHHHHH-HHH
Confidence 3344467777 655
No 6
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=4.85 E-value=3.5e+02 Score=21.13 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=16.2
Q ss_pred HhhhhhhheeeccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 037704 252 GVMHDIIYCYLTRAPPTWEMTSFFVLHGTCLTMELAAKR 290 (365)
Q Consensus 252 Gl~H~~~~~~~~~~~~~~~~~~FFllqgv~i~~E~~~~~ 290 (365)
|.|||++ +.|++.-.+|+..++
T Consensus 1 ~~MHE~s-----------------i~~~i~~~~~~~A~~ 22 (119)
T 2kdx_A 1 GSMHEYS-----------------VVSSLIALCEEHAKK 22 (119)
T ss_dssp CCCHHHH-----------------HHHHHHHHHHHHHHH
T ss_pred CcccHHH-----------------HHHHHHHHHHHHHHH
Confidence 6799986 677777777776655
No 7
>2pfc_A Hypothetical protein RV0098/MT0107; thioesterase, virulence, unknown function; HET: PLM; 2.30A {Mycobacterium tuberculosis}
Probab=4.58 E-value=2.8e+02 Score=23.92 Aligned_cols=12 Identities=17% Similarity=0.224 Sum_probs=10.5
Q ss_pred hhhhcCChhhhh
Q 037704 195 EPYLSTSLQDFW 206 (365)
Q Consensus 195 ~P~~a~Sl~dFW 206 (365)
.|+.+.|+.|||
T Consensus 100 ~~f~~Wtiddf~ 111 (183)
T 2pfc_A 100 RVLRGWSIDDYC 111 (183)
T ss_dssp GGGTTCCHHHHH
T ss_pred hhhcccCHHHHH
Confidence 467889999999
No 8
>1sdi_A ORF-23, hypothetical protein YCFC; structural genomics, paracytosis, peripheral membrane protein, PSI, protein structure initiative; 1.65A {Escherichia coli} SCOP: a.198.1.1 PDB: 1qz4_A
Probab=3.78 E-value=2.8e+02 Score=24.61 Aligned_cols=11 Identities=36% Similarity=0.486 Sum_probs=9.0
Q ss_pred hhhhhhHhHHH
Q 037704 206 WGRRWNLMVTS 216 (365)
Q Consensus 206 WGrRWH~~l~~ 216 (365)
=|+|||..+++
T Consensus 185 GG~RwqllF~R 195 (213)
T 1sdi_A 185 GGGRLQLMFSR 195 (213)
T ss_dssp TCCHHHHHHHH
T ss_pred CCchhhHHhhH
Confidence 37899999875
No 9
>3dve_B Voltage-dependent N-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.35A {Oryctolagus cuniculus} PDB: 3dvj_B
Probab=3.63 E-value=3.3e+02 Score=15.60 Aligned_cols=9 Identities=22% Similarity=0.564 Sum_probs=4.8
Q ss_pred Chhhhhhhhh
Q 037704 201 SLQDFWGRRW 210 (365)
Q Consensus 201 Sl~dFWGrRW 210 (365)
=+.||| |++
T Consensus 10 lI~d~~-r~~ 18 (23)
T 3dve_B 10 MIFDFY-KQN 18 (26)
T ss_dssp HHHHHH-HHT
T ss_pred HHHHHH-HHH
Confidence 356666 543
No 10
>2i2j_A Signaling peptide UA159SP; helix, signaling protein; NMR {Synthetic}
Probab=3.58 E-value=6.4e+02 Score=14.32 Aligned_cols=18 Identities=39% Similarity=0.523 Sum_probs=11.4
Q ss_pred CChhhhhhhhhhHhHHHHh
Q 037704 200 TSLQDFWGRRWNLMVTSIL 218 (365)
Q Consensus 200 ~Sl~dFWGrRWH~~l~~~l 218 (365)
-|++.|. |-.|.++.+-+
T Consensus 2 gslstff-rlfnrsftqal 19 (26)
T 2i2j_A 2 GSLSTFF-RLFNRSFTQAL 19 (26)
T ss_pred ccHHHHH-HHHhHHHHHHh
Confidence 4677777 76666665544
Done!