Query 037704
Match_columns 365
No_of_seqs 236 out of 1374
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 05:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037704.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037704hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r4pb_ b.40.2.1 (B:) Verotoxi 7.7 24 0.0018 23.5 -1.1 11 202-212 25-35 (70)
2 d1c4qa_ b.40.2.1 (A:) Verotoxi 6.2 32 0.0023 22.8 -1.1 12 201-212 25-36 (69)
3 d1q90l_ f.23.24.1 (L:) PetL su 3.8 3.7E+02 0.027 14.7 2.6 17 154-170 9-25 (32)
4 d2b7ea1 a.159.2.1 (A:4-59) Pre 3.8 92 0.0067 20.1 -0.2 33 192-226 5-38 (56)
5 d1xrka_ d.32.1.2 (A:) Bleomyci 3.5 1.6E+02 0.012 19.7 1.1 23 323-345 8-30 (120)
6 d1v54l_ f.23.6.1 (L:) Mitochon 3.5 2.9E+02 0.021 16.9 2.0 14 240-253 19-32 (46)
7 d1jifa_ d.32.1.2 (A:) Bleomyci 3.4 1.7E+02 0.013 19.8 1.1 23 323-345 9-31 (122)
8 d2b1xa2 d.129.3.3 (A:163-441) 3.0 1.8E+02 0.013 23.9 1.0 18 197-215 257-274 (279)
9 d1or7c_ a.180.1.1 (C:) N-termi 3.0 2.1E+02 0.015 18.6 1.1 19 199-219 26-44 (66)
10 d1nekd_ f.21.2.2 (D:) Succinat 3.0 6.7E+02 0.049 17.2 4.3 27 244-290 58-84 (113)
No 1
>d1r4pb_ b.40.2.1 (B:) Verotoxin-1/shiga-toxin, B-pentamer {Shigella dysenteriae, toxin II [TaxId: 622]}
Probab=7.70 E-value=24 Score=23.51 Aligned_cols=11 Identities=45% Similarity=1.347 Sum_probs=9.2
Q ss_pred hhhhhhhhhhH
Q 037704 202 LQDFWGRRWNL 212 (365)
Q Consensus 202 l~dFWGrRWH~ 212 (365)
=+|+|-.|||.
T Consensus 25 gkeywtnrwnl 35 (70)
T d1r4pb_ 25 GKEYWTSRWNL 35 (70)
T ss_dssp TEEEEECCTTH
T ss_pred Cceeeccccch
Confidence 35899999996
No 2
>d1c4qa_ b.40.2.1 (A:) Verotoxin-1/shiga-toxin, B-pentamer {Escherichia coli [TaxId: 562]}
Probab=6.20 E-value=32 Score=22.82 Aligned_cols=12 Identities=25% Similarity=0.199 Sum_probs=9.6
Q ss_pred ChhhhhhhhhhH
Q 037704 201 SLQDFWGRRWNL 212 (365)
Q Consensus 201 Sl~dFWGrRWH~ 212 (365)
+=+|+|-.|||.
T Consensus 25 ~gkeywtnrwnl 36 (69)
T d1c4qa_ 25 GDKELATNRANL 36 (69)
T ss_dssp TTEEEEECCTTH
T ss_pred cCceehhcccch
Confidence 346899999996
No 3
>d1q90l_ f.23.24.1 (L:) PetL subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.79 E-value=3.7e+02 Score=14.66 Aligned_cols=17 Identities=29% Similarity=0.243 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037704 154 HQKLIIIICMLYIYLLL 170 (365)
Q Consensus 154 ~~~~~~~~y~l~iY~~f 170 (365)
...++++.+++.+|..+
T Consensus 9 glligal~~tlgiylgl 25 (32)
T d1q90l_ 9 GLLIGALVFTLGIYLGL 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45667777888887654
No 4
>d2b7ea1 a.159.2.1 (A:4-59) Pre-mRNA-processing protein PRP40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.77 E-value=92 Score=20.14 Aligned_cols=33 Identities=12% Similarity=0.316 Sum_probs=24.2
Q ss_pred CCchhhhcCChhhhhhhhhhHhHHHH-hHhhccccc
Q 037704 192 QFNEPYLSTSLQDFWGRRWNLMVTSI-LHSTVYDPV 226 (365)
Q Consensus 192 ~F~~P~~a~Sl~dFWGrRWH~~l~~~-lr~~vy~Pl 226 (365)
.|.......++..+| .|+|.++.. +.|-=|.-+
T Consensus 5 aF~~lL~e~~V~s~w--tWeq~~~~i~~~DPrY~al 38 (56)
T d2b7ea1 5 EFITMLKENQVDSTW--SFSRIISELGTRDPRYWMV 38 (56)
T ss_dssp HHHHHHHHTTCCSSC--CHHHHHHHHHHHCTHHHHS
T ss_pred HHHHHHHHcCCCCCC--cHHHHHHHHhccCcchHhh
Confidence 356667788999999 599999975 666555433
No 5
>d1xrka_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptoalloteichus hindustanus [TaxId: 2017]}
Probab=3.54 E-value=1.6e+02 Score=19.73 Aligned_cols=23 Identities=9% Similarity=0.020 Sum_probs=19.3
Q ss_pred cccccCcHHHHHHHHHHHHhccc
Q 037704 323 PLLRGGVNEKMMREVLTFANLIK 345 (365)
Q Consensus 323 p~~r~~~~~~~~~~~~~~~~~~~ 345 (365)
|.+...|++++.+.|..++|+.-
T Consensus 8 pvL~v~D~~~s~~FY~~~LG~~~ 30 (120)
T d1xrka_ 8 PVLTARDVAEAVEFWTDRLGFSR 30 (120)
T ss_dssp EEEEESCHHHHHHHHHHTTCCEE
T ss_pred EEEEECCHHHHHHHHHHhhCCeE
Confidence 45578999999999999998843
No 6
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.47 E-value=2.9e+02 Score=16.86 Aligned_cols=14 Identities=36% Similarity=0.418 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHh
Q 037704 240 ALPAVLATFAVSGV 253 (365)
Q Consensus 240 ~~~~ll~tF~vSGl 253 (365)
+..+++++|+-||+
T Consensus 19 rLla~m~~~fGsgf 32 (46)
T d1v54l_ 19 RLLAMMTLFFGSGF 32 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc
Confidence 67888999998885
No 7
>d1jifa_ d.32.1.2 (A:) Bleomycin resistance protein, BRP {Streptomyces verticillus [TaxId: 29309]}
Probab=3.36 E-value=1.7e+02 Score=19.81 Aligned_cols=23 Identities=13% Similarity=-0.021 Sum_probs=19.6
Q ss_pred cccccCcHHHHHHHHHHHHhccc
Q 037704 323 PLLRGGVNEKMMREVLTFANLIK 345 (365)
Q Consensus 323 p~~r~~~~~~~~~~~~~~~~~~~ 345 (365)
|.++..|.+++.+.|..++|+..
T Consensus 9 pvL~v~Dl~~s~~FY~~vLG~~~ 31 (122)
T d1jifa_ 9 PVLTAVDVPANVSFWVDTLGFEK 31 (122)
T ss_dssp EEEEESSHHHHHHHHHHTTCCEE
T ss_pred EEEEcCCHHHHHHHHHhhhCCce
Confidence 45689999999999999998743
No 8
>d2b1xa2 d.129.3.3 (A:163-441) Naphthalene 1,2-dioxygenase alpha subunit, C-domain {Rhodococcus sp. ncimb12038 [TaxId: 92694]}
Probab=3.03 E-value=1.8e+02 Score=23.86 Aligned_cols=18 Identities=17% Similarity=0.534 Sum_probs=14.5
Q ss_pred hhcCChhhhhhhhhhHhHH
Q 037704 197 YLSTSLQDFWGRRWNLMVT 215 (365)
Q Consensus 197 ~~a~Sl~dFWGrRWH~~l~ 215 (365)
..-.+.+.|| |+|++..+
T Consensus 257 ~~E~~~R~fy-~~W~~~M~ 274 (279)
T d2b1xa2 257 YAEANQRNFL-EYWMQLML 274 (279)
T ss_dssp CCCHHHHHHH-HHHHHHHH
T ss_pred CCcHHHHHHH-HHHHHHhc
Confidence 3567899999 99998764
No 9
>d1or7c_ a.180.1.1 (C:) N-terminal, cytoplasmic domain of anti-sigmaE factor RseA {Escherichia coli [TaxId: 562]}
Probab=3.01 E-value=2.1e+02 Score=18.58 Aligned_cols=19 Identities=16% Similarity=0.581 Sum_probs=14.3
Q ss_pred cCChhhhhhhhhhHhHHHHhH
Q 037704 199 STSLQDFWGRRWNLMVTSILH 219 (365)
Q Consensus 199 a~Sl~dFWGrRWH~~l~~~lr 219 (365)
...+++.| +|+|.. +..+|
T Consensus 26 d~e~~~~W-~~Yhli-~d~lr 44 (66)
T d1or7c_ 26 NPEMQKTW-ESYHLI-RDSMR 44 (66)
T ss_dssp CHHHHHHH-HHHHHH-HHHHH
T ss_pred CHHHHHHH-HHHHHH-HHHHh
Confidence 46789999 999974 55555
No 10
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=2.98 E-value=6.7e+02 Score=17.22 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=19.8
Q ss_pred HHHHHHHHHhhhhhhheeeccCCCCchHHHHHHHHHHHHHHHHHHHH
Q 037704 244 VLATFAVSGVMHDIIYCYLTRAPPTWEMTSFFVLHGTCLTMELAAKR 290 (365)
Q Consensus 244 ll~tF~vSGl~H~~~~~~~~~~~~~~~~~~FFllqgv~i~~E~~~~~ 290 (365)
+...|+++.+.|... |+-.++||.++.
T Consensus 58 l~~l~l~~~~~H~~l--------------------Gl~~IieDYi~~ 84 (113)
T d1nekd_ 58 FTLLALFSILIHAWI--------------------GMWQVLTDYVKP 84 (113)
T ss_dssp HHHHHHHHHHHHHHH--------------------HHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHH--------------------hHhhhHHHhcCC
Confidence 456677777788664 777889998854
Done!