BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037705
(96 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZMD|A Chain A, Crystal Structure Of Absc, A Marr Family Transcriptional
Regulator From Streptomyces Coelicolor
pdb|3ZMD|B Chain B, Crystal Structure Of Absc, A Marr Family Transcriptional
Regulator From Streptomyces Coelicolor
pdb|3ZMD|C Chain C, Crystal Structure Of Absc, A Marr Family Transcriptional
Regulator From Streptomyces Coelicolor
pdb|3ZMD|D Chain D, Crystal Structure Of Absc, A Marr Family Transcriptional
Regulator From Streptomyces Coelicolor
Length = 178
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 12/70 (17%)
Query: 23 CAWWMLLNWVWLKPKKLEKFLRKQGFSGNSYKVF------HGD---MKELAQTTKEAKSR 73
CAW L L +LEK L+ G + N Y++ GD M +LA T ++KSR
Sbjct: 36 CAWRTHLEVNRLLTHQLEKDLQPFGLTMNDYEILVNLSESEGDRMRMSDLATATMQSKSR 95
Query: 74 PISLSDDIAR 83
LS I R
Sbjct: 96 ---LSHQITR 102
>pdb|3O98|A Chain A, Glutathionylspermidine SynthetaseAMIDASE C59A COMPLEX WITH
ADP AND Gsp
pdb|3O98|B Chain B, Glutathionylspermidine SynthetaseAMIDASE C59A COMPLEX WITH
ADP AND Gsp
Length = 619
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 45 KQGFSGNSYKVFHGDMKELAQTTKEAKSRP 74
+QG+ GN + G + ELA K +++RP
Sbjct: 351 EQGYKGNGFNPAEGLINELAGAWKHSRARP 380
>pdb|2IO7|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND AMPPNP
pdb|2IO7|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND AMPPNP
pdb|2IO8|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP
pdb|2IO8|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP
pdb|2IO9|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ ,GSH AND ADP
pdb|2IO9|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ ,GSH AND ADP
pdb|2IOA|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP AND
Phosphinate Inhibitor
pdb|2IOA|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE INCOMPLEX WITH MG2+ AND ADP AND
Phosphinate Inhibitor
pdb|2IOB|A Chain A, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE APO PROTEIN
pdb|2IOB|B Chain B, E. Coli Bifunctional Glutathionylspermidine
SynthetaseAMIDASE APO PROTEIN
Length = 619
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 45 KQGFSGNSYKVFHGDMKELAQTTKEAKSRP 74
+QG+ GN + G + ELA K +++RP
Sbjct: 351 EQGYKGNGFNPAEGLINELAGAWKHSRARP 380
>pdb|2A03|A Chain A, Superoxide Dismutase Protein From Plasmodium Berghei
pdb|2A03|B Chain B, Superoxide Dismutase Protein From Plasmodium Berghei
Length = 206
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 1 MEATLWAVAFSIAFSTAILAVACAWWMLLNW 31
+ +W A+ I + L+ AWW L+NW
Sbjct: 163 LTCDVWEHAYYIDYRNDRLSYVKAWWNLVNW 193
>pdb|2AWP|A Chain A, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
pdb|2AWP|B Chain B, Crystal Structure Of Plasmodium Knowlesi Structure Of Iron
Super-Oxide Dismutase
Length = 198
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 1 MEATLWAVAFSIAFSTAILAVACAWWMLLNWVWLKPKKLEKFLRK 45
+ +W A+ I + + AWW L+NW + + L+K L+K
Sbjct: 155 LTCDIWEHAYYIDYRNDRPSYVKAWWNLVNWNFAN-ENLKKALQK 198
>pdb|2GOJ|A Chain A, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
pdb|2GOJ|B Chain B, The Crystal Structure Of The Enzyme Fe-Superoxide
Dismutase From Plasmodium Falciparum
Length = 197
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 1 MEATLWAVAFSIAFSTAILAVACAWWMLLNWVWLKPKKLEKFLRK 45
+ +W A+ I + + AWW L+NW + + L+K ++K
Sbjct: 154 LTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFAN-ENLKKAMKK 197
>pdb|2BPI|A Chain A, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum.
pdb|2BPI|B Chain B, Stucture Of Iron Dependent Superoxide Dismutase From P.
Falciparum
Length = 206
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 1 MEATLWAVAFSIAFSTAILAVACAWWMLLNWVWLKPKKLEKFLRK 45
+ +W A+ I + + AWW L+NW + + L+K ++K
Sbjct: 155 LTCDIWEHAYYIDYRNDRASYVKAWWNLVNWNFAN-ENLKKAMQK 198
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.134 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,941,828
Number of Sequences: 62578
Number of extensions: 95161
Number of successful extensions: 384
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 378
Number of HSP's gapped (non-prelim): 13
length of query: 96
length of database: 14,973,337
effective HSP length: 62
effective length of query: 34
effective length of database: 11,093,501
effective search space: 377179034
effective search space used: 377179034
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)