Query 037705
Match_columns 96
No_of_seqs 104 out of 393
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 03:37:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02290 cytokinin trans-hydro 99.0 6.7E-09 1.5E-13 82.8 10.6 76 21-96 17-93 (516)
2 COG3898 Uncharacterized membra 95.8 0.036 7.7E-07 45.7 6.7 54 17-70 50-110 (531)
3 PTZ00404 cytochrome P450; Prov 95.1 0.03 6.5E-07 44.4 4.0 30 35-64 18-47 (482)
4 PF07219 HemY_N: HemY protein 94.4 0.14 3.1E-06 33.7 5.3 62 2-70 13-85 (108)
5 KOG0157 Cytochrome P450 CYP4/C 94.2 0.048 1E-06 44.3 3.2 24 44-67 33-56 (497)
6 KOG0158 Cytochrome P450 CYP3/C 93.3 0.19 4E-06 41.8 5.3 24 43-66 28-51 (499)
7 TIGR00540 hemY_coli hemY prote 89.6 0.96 2.1E-05 35.6 5.4 40 2-44 38-77 (409)
8 PRK10747 putative protoheme IX 89.5 0.94 2E-05 35.6 5.3 64 1-68 37-108 (398)
9 PLN00168 Cytochrome P450; Prov 88.0 0.63 1.4E-05 37.5 3.5 31 33-63 22-52 (519)
10 PLN03234 cytochrome P450 83B1; 78.7 3 6.5E-05 33.2 3.8 18 46-63 28-45 (499)
11 PRK11677 hypothetical protein; 75.3 7.7 0.00017 27.1 4.6 38 6-45 3-40 (134)
12 PLN02183 ferulate 5-hydroxylas 72.1 5.9 0.00013 31.9 3.9 27 32-63 27-53 (516)
13 PLN02302 ent-kaurenoic acid ox 69.1 15 0.00032 28.9 5.5 16 49-64 45-60 (490)
14 TIGR00847 ccoS cytochrome oxid 64.6 17 0.00037 21.4 3.9 19 1-19 1-19 (51)
15 PLN02169 fatty acid (omega-1)- 59.1 29 0.00062 28.0 5.5 23 42-64 27-49 (500)
16 TIGR02920 acc_sec_Y2 accessory 57.5 25 0.00055 28.3 4.9 32 23-54 286-317 (395)
17 PF04277 OAD_gamma: Oxaloaceta 56.6 43 0.00092 20.3 5.0 31 2-32 2-32 (79)
18 PLN02687 flavonoid 3'-monooxyg 56.5 12 0.00027 30.1 3.0 17 47-63 35-51 (517)
19 PLN03112 cytochrome P450 famil 53.6 11 0.00023 30.2 2.2 16 48-63 34-49 (514)
20 KOG0878 60S ribosomal protein 52.8 3.9 8.5E-05 28.3 -0.3 38 30-67 31-88 (124)
21 PRK12417 secY preprotein trans 50.8 45 0.00097 27.0 5.4 33 22-54 292-324 (404)
22 PF00558 Vpu: Vpu protein; In 50.1 37 0.0008 21.9 3.9 12 22-33 19-30 (81)
23 PF10281 Ish1: Putative stress 50.0 40 0.00086 18.0 4.4 30 35-67 5-34 (38)
24 PF06305 DUF1049: Protein of u 48.7 53 0.0012 19.1 6.0 12 8-19 22-33 (68)
25 PF03115 Astro_capsid: Astrovi 48.5 5.8 0.00013 35.0 0.0 17 39-55 65-81 (787)
26 PLN02738 carotene beta-ring hy 47.4 8.4 0.00018 32.6 0.8 20 35-54 104-123 (633)
27 PLN02971 tryptophan N-hydroxyl 46.6 38 0.00082 27.6 4.4 16 48-63 59-74 (543)
28 PF12994 DUF3878: Domain of un 46.3 17 0.00037 28.7 2.3 25 35-59 249-273 (299)
29 PF13276 HTH_21: HTH-like doma 45.4 22 0.00048 20.4 2.2 20 34-53 38-57 (60)
30 TIGR02876 spore_yqfD sporulati 45.3 69 0.0015 25.6 5.6 31 34-65 116-146 (382)
31 PF04799 Fzo_mitofusin: fzo-li 43.9 7.6 0.00016 28.3 0.0 20 29-48 62-81 (171)
32 PF15643 Tox-PL-2: Papain fold 43.1 20 0.00043 24.0 1.9 24 36-59 25-48 (100)
33 PLN02196 abscisic acid 8'-hydr 41.9 37 0.00081 26.9 3.6 18 46-63 35-52 (463)
34 PF04995 CcmD: Heme exporter p 40.0 69 0.0015 17.9 4.6 17 30-46 23-39 (46)
35 PF08733 PalH: PalH/RIM21; In 39.7 83 0.0018 24.9 5.3 17 35-51 317-333 (348)
36 PTZ00219 Sec61 alpha subunit; 39.1 86 0.0019 26.0 5.4 32 23-54 370-406 (474)
37 PRK09173 F0F1 ATP synthase sub 37.9 90 0.002 21.4 4.7 11 1-11 1-11 (159)
38 PF11823 DUF3343: Protein of u 34.3 33 0.00073 20.6 1.8 18 37-54 15-35 (73)
39 PF06898 YqfD: Putative stage 34.2 1.1E+02 0.0023 24.4 5.1 34 34-67 119-152 (385)
40 PLN02232 ubiquinone biosynthes 32.6 34 0.00073 23.5 1.8 28 33-60 125-152 (160)
41 PF13986 DUF4224: Domain of un 32.3 39 0.00085 19.2 1.8 15 34-48 15-29 (47)
42 TIGR03141 cytochro_ccmD heme e 32.1 96 0.0021 17.3 4.7 17 30-46 24-40 (45)
43 PF11337 DUF3139: Protein of u 31.0 1.4E+02 0.0029 18.6 5.2 14 36-49 37-50 (85)
44 PRK03814 oxaloacetate decarbox 31.0 1.5E+02 0.0032 19.0 4.5 30 4-33 11-40 (85)
45 cd00040 CSF2 Granulocyte Macro 30.3 32 0.0007 23.7 1.4 35 34-69 50-86 (121)
46 TIGR01195 oadG_fam sodium pump 29.3 1.5E+02 0.0033 18.6 4.8 28 5-32 8-35 (82)
47 PF15061 DUF4538: Domain of un 28.9 70 0.0015 19.4 2.5 15 35-49 34-48 (58)
48 COG5567 Predicted small peripl 28.3 94 0.002 18.8 3.0 13 42-54 16-28 (58)
49 PF13167 GTP-bdg_N: GTP-bindin 28.3 46 0.00099 21.8 1.8 36 49-84 33-70 (95)
50 PLN03195 fatty acid omega-hydr 27.8 1.4E+02 0.003 23.9 4.8 18 45-62 29-46 (516)
51 PF11990 DUF3487: Protein of u 27.4 2E+02 0.0044 19.5 6.7 24 36-59 86-110 (121)
52 COG4578 GutM Glucitol operon a 26.9 1.9E+02 0.0042 20.1 4.8 28 21-50 17-47 (128)
53 smart00040 CSF2 Granulocyte-ma 26.5 41 0.00088 23.1 1.3 34 34-68 50-85 (121)
54 PF15048 OSTbeta: Organic solu 26.4 75 0.0016 22.1 2.6 16 2-17 31-46 (125)
55 KOG0156 Cytochrome P450 CYP2 s 26.4 1.5E+02 0.0032 24.6 4.8 18 48-65 28-45 (489)
56 PF10661 EssA: WXG100 protein 26.0 1.5E+02 0.0032 20.8 4.1 12 22-33 133-144 (145)
57 PF04689 S1FA: DNA binding pro 25.9 1.5E+02 0.0033 18.5 3.7 12 40-51 56-67 (69)
58 PRK00124 hypothetical protein; 25.4 66 0.0014 22.8 2.3 18 36-53 108-127 (151)
59 COG3214 Uncharacterized protei 25.0 73 0.0016 26.1 2.7 53 40-92 12-70 (400)
60 PF06842 DUF1242: Protein of u 24.9 37 0.00081 18.6 0.8 25 24-51 10-34 (36)
61 COG0011 Uncharacterized conser 24.7 1.2E+02 0.0026 20.2 3.3 35 38-72 25-62 (100)
62 smart00843 Ftsk_gamma This dom 24.4 1.2E+02 0.0026 18.5 3.0 28 25-52 25-52 (63)
63 COG5182 CUS1 Splicing factor 3 24.2 25 0.00055 28.6 -0.0 31 40-70 182-217 (429)
64 PF12404 DUF3663: Peptidase ; 23.8 54 0.0012 20.9 1.5 13 38-50 42-54 (77)
65 COG2454 Uncharacterized conser 23.5 58 0.0013 24.5 1.8 17 37-53 147-163 (211)
66 PLN02966 cytochrome P450 83A1 23.0 79 0.0017 25.3 2.6 17 47-63 30-46 (502)
67 PF02631 RecX: RecX family; I 22.9 61 0.0013 21.1 1.7 17 34-50 43-59 (121)
68 COG3071 HemY Uncharacterized e 22.5 2.4E+02 0.0053 23.2 5.2 17 2-18 38-54 (400)
69 PF15050 SCIMP: SCIMP protein 21.9 2.8E+02 0.006 19.4 4.7 9 41-49 32-40 (133)
70 PHA03093 EEV glycoprotein; Pro 21.8 1.2E+02 0.0025 22.5 3.0 17 7-23 42-58 (185)
71 KOG0630 Predicted pyridoxal-de 21.8 73 0.0016 27.7 2.2 32 26-63 741-772 (838)
72 PF10515 APP_amyloid: beta-amy 21.7 26 0.00056 20.9 -0.3 15 42-56 37-51 (52)
73 KOG4631 NADH:ubiquinone oxidor 21.5 64 0.0014 21.5 1.5 17 38-54 27-43 (100)
74 PF03773 DUF318: Predicted per 21.1 2.9E+02 0.0063 21.0 5.3 21 31-51 32-52 (307)
75 PRK12907 secY preprotein trans 20.8 2.1E+02 0.0045 23.5 4.6 27 25-51 323-349 (434)
76 PF06295 DUF1043: Protein of u 20.6 2.2E+02 0.0048 19.2 4.1 30 14-44 6-35 (128)
77 PF11233 DUF3035: Protein of u 20.3 84 0.0018 22.4 2.0 21 33-53 135-155 (157)
78 cd00755 YgdL_like Family of ac 20.3 78 0.0017 23.5 1.9 13 37-49 160-172 (231)
79 KOG0826 Predicted E3 ubiquitin 20.2 3.7E+02 0.0079 21.9 5.7 51 3-56 234-285 (357)
80 CHL00161 secY preprotein trans 20.2 3E+02 0.0065 22.3 5.4 22 33-54 317-338 (417)
No 1
>PLN02290 cytokinin trans-hydroxylase
Probab=98.97 E-value=6.7e-09 Score=82.81 Aligned_cols=76 Identities=17% Similarity=0.402 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHhchHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHhcCCCCCC-CcCccccccchHHHHhhhC
Q 037705 21 VACAWWMLLNWVWLKPKKLEKFLRKQGFSGNSYKVFHGDMKELAQTTKEAKSRPISL-SDDIARRILPFHHHIITNF 96 (96)
Q Consensus 21 ~~~~~~~~~~~~w~rP~rl~r~Lr~QGi~GPpy~fl~Gn~~E~~~~~~~a~s~p~~~-sHDi~prV~P~~~~w~~~Y 96 (96)
+.-++++.++.+.+.|+|+++.++++|+.||++..++||+.++.....+...++++. .||+..+..+++.+|.++|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 93 (516)
T PLN02290 17 LLRVAYDTISCYFLTPRRIKKIMERQGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQY 93 (516)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHcCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHh
Confidence 445677888889999999999999999999999999999999987666655665553 6788888899999999987
No 2
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.81 E-value=0.036 Score=45.72 Aligned_cols=54 Identities=24% Similarity=0.498 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHH----HcCCCCCCCccc---cCCHHHHHHHHHHh
Q 037705 17 AILAVACAWWMLLNWVWLKPKKLEKFLR----KQGFSGNSYKVF---HGDMKELAQTTKEA 70 (96)
Q Consensus 17 ~~~~~~~~~~~~~~~~w~rP~rl~r~Lr----~QGi~GPpy~fl---~Gn~~E~~~~~~~a 70 (96)
++++.+.++|.+++++|-.|++++|+|| .||+.--+--|+ .||-.+-++|.+++
T Consensus 50 a~vaav~llwwlv~~iw~sP~t~~Ryfr~rKRdrgyqALStGliAagAGda~lARkmt~~~ 110 (531)
T COG3898 50 ALVAAVLLLWWLVRSIWESPYTARRYFRERKRDRGYQALSTGLIAAGAGDASLARKMTARA 110 (531)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhhhhhhhccCchHHHHHHHHHH
Confidence 3333345788999999999999999875 789876666566 48888888887664
No 3
>PTZ00404 cytochrome P450; Provisional
Probab=95.08 E-value=0.03 Score=44.36 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=24.3
Q ss_pred chHHHHHHHHHcCCCCCCCccccCCHHHHH
Q 037705 35 KPKKLEKFLRKQGFSGNSYKVFHGDMKELA 64 (96)
Q Consensus 35 rP~rl~r~Lr~QGi~GPpy~fl~Gn~~E~~ 64 (96)
.+.+..+++++++|.||++..++||+.++.
T Consensus 18 ~~~~~~~~~~~~~~pgp~~~p~~G~~~~~~ 47 (482)
T PTZ00404 18 NAYKKYKKIHKNELKGPIPIPILGNLHQLG 47 (482)
T ss_pred HHHHHhhhccCCCCCCCCCCCeeccHhhhc
Confidence 355556679999999999888999987764
No 4
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=94.40 E-value=0.14 Score=33.74 Aligned_cols=62 Identities=19% Similarity=0.363 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH-----------cCCCCCCCccccCCHHHHHHHHHHh
Q 037705 2 EATLWAVAFSIAFSTAILAVACAWWMLLNWVWLKPKKLEKFLRK-----------QGFSGNSYKVFHGDMKELAQTTKEA 70 (96)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~rP~rl~r~Lr~-----------QGi~GPpy~fl~Gn~~E~~~~~~~a 70 (96)
|+++|..++..++++. +++++++++..+|--|.++.+.+++ ||+. .+.-||..+-.+....+
T Consensus 13 e~sl~~~~~~l~~~~~---~l~ll~~ll~~~~~~p~~~~~~~~~rr~~ka~~al~~Gl~----al~~G~~~~A~k~~~~a 85 (108)
T PF07219_consen 13 ETSLWVALILLLLLFV---VLYLLLRLLRRLLSLPSRVRRWRRRRRRRKAQRALSRGLI----ALAEGDWQRAEKLLAKA 85 (108)
T ss_pred EeeHHHHHHHHHHHHH---HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHHHHHHHHHH
Confidence 7777777666433333 3467889999999889888554432 3331 25678888766655444
No 5
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=94.15 E-value=0.048 Score=44.28 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=21.2
Q ss_pred HHcCCCCCCCccccCCHHHHHHHH
Q 037705 44 RKQGFSGNSYKVFHGDMKELAQTT 67 (96)
Q Consensus 44 r~QGi~GPpy~fl~Gn~~E~~~~~ 67 (96)
+.++..||++..++||..|+.+..
T Consensus 33 ~~~~~~gp~~~P~iG~~~~~~~~~ 56 (497)
T KOG0157|consen 33 KKKLPPGPPGWPLIGNLLEFLKPL 56 (497)
T ss_pred HhccCCCCCCCCcccchHHhhcch
Confidence 889999999999999999986543
No 6
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.34 E-value=0.19 Score=41.81 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=20.1
Q ss_pred HHHcCCCCCCCccccCCHHHHHHH
Q 037705 43 LRKQGFSGNSYKVFHGDMKELAQT 66 (96)
Q Consensus 43 Lr~QGi~GPpy~fl~Gn~~E~~~~ 66 (96)
.++-||.||+|..++||+..+.+.
T Consensus 28 w~rrGi~~~~p~p~~Gn~~~~~~~ 51 (499)
T KOG0158|consen 28 WRRRGIPGPKPLPFLGNLPGMLKR 51 (499)
T ss_pred hccCCCCCCCCCCcEecHHHHHhc
Confidence 344499999999999999998774
No 7
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=89.56 E-value=0.96 Score=35.58 Aligned_cols=40 Identities=15% Similarity=0.102 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Q 037705 2 EATLWAVAFSIAFSTAILAVACAWWMLLNWVWLKPKKLEKFLR 44 (96)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~rP~rl~r~Lr 44 (96)
|+++|..++..++++++ ++++|+++..+|--|.++++.++
T Consensus 38 e~s~~~~~~~~~~~~~~---~~~~~~l~~~~~~~p~~~~~~~~ 77 (409)
T TIGR00540 38 EMSITGLAIFFIIALAI---IFAFEWGLRRFFRLGAHSRGWFS 77 (409)
T ss_pred EeeHHHHHHHHHHHHHH---HHHHHHHHHHHHHccHHHHHHHH
Confidence 77888777664443333 34567888888888877765443
No 8
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=89.46 E-value=0.94 Score=35.63 Aligned_cols=64 Identities=13% Similarity=0.203 Sum_probs=37.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHcCC--------CCCCCccccCCHHHHHHHHH
Q 037705 1 MEATLWAVAFSIAFSTAILAVACAWWMLLNWVWLKPKKLEKFLRKQGF--------SGNSYKVFHGDMKELAQTTK 68 (96)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~rP~rl~r~Lr~QGi--------~GPpy~fl~Gn~~E~~~~~~ 68 (96)
.|+++|..+++.++++.+ ++++++++..+|-.|.++++.+++..- +| --.+.-||..+-.+...
T Consensus 37 ie~sl~~~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~rr~~~~~~~~~~g-l~a~~eGd~~~A~k~l~ 108 (398)
T PRK10747 37 IETSVTGLAIILILAMVV---LFAIEWLLRRIFRTGARTRGWFVGRKRRRARKQTEQA-LLKLAEGDYQQVEKLMT 108 (398)
T ss_pred EEehHHHHHHHHHHHHHH---HHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHH-HHHHhCCCHHHHHHHHH
Confidence 378888877775444443 345677888888777766655433111 11 01134588877665544
No 9
>PLN00168 Cytochrome P450; Provisional
Probab=87.97 E-value=0.63 Score=37.48 Aligned_cols=31 Identities=13% Similarity=-0.114 Sum_probs=22.7
Q ss_pred HhchHHHHHHHHHcCCCCCCCccccCCHHHH
Q 037705 33 WLKPKKLEKFLRKQGFSGNSYKVFHGDMKEL 63 (96)
Q Consensus 33 w~rP~rl~r~Lr~QGi~GPpy~fl~Gn~~E~ 63 (96)
|+.|.+..-+.+++=..||++..++||+.++
T Consensus 22 ~~~~~~~~~~~~~~lpPgp~~~pl~G~l~~~ 52 (519)
T PLN00168 22 LGKHGGRGGKKGRRLPPGPPAVPLLGSLVWL 52 (519)
T ss_pred hhhhhccCCCCCCCCCcCCCCCcccccHHhh
Confidence 5556666666666667899988899998654
No 10
>PLN03234 cytochrome P450 83B1; Provisional
Probab=78.70 E-value=3 Score=33.20 Aligned_cols=18 Identities=11% Similarity=0.134 Sum_probs=14.5
Q ss_pred cCCCCCCCccccCCHHHH
Q 037705 46 QGFSGNSYKVFHGDMKEL 63 (96)
Q Consensus 46 QGi~GPpy~fl~Gn~~E~ 63 (96)
+.+.||++-.++||+.++
T Consensus 28 ~~pPgp~~~P~iG~~~~~ 45 (499)
T PLN03234 28 RLPPGPKGLPIIGNLHQM 45 (499)
T ss_pred CCCcCCCCCCeeccHHhc
Confidence 357899888889998776
No 11
>PRK11677 hypothetical protein; Provisional
Probab=75.25 E-value=7.7 Score=27.08 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Q 037705 6 WAVAFSIAFSTAILAVACAWWMLLNWVWLKPKKLEKFLRK 45 (96)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~w~rP~rl~r~Lr~ 45 (96)
|.++++ .+++|++ +.+++.|+.+.---..+.+++.|.+
T Consensus 3 W~~a~i-~livG~i-iG~~~~R~~~~~~~~q~~le~eLe~ 40 (134)
T PRK11677 3 WEYALI-GLVVGII-IGAVAMRFGNRKLRQQQALQYELEK 40 (134)
T ss_pred HHHHHH-HHHHHHH-HHHHHHhhccchhhHHHHHHHHHHH
Confidence 755553 4444543 4555666665444566677766554
No 12
>PLN02183 ferulate 5-hydroxylase
Probab=72.10 E-value=5.9 Score=31.89 Aligned_cols=27 Identities=15% Similarity=0.091 Sum_probs=19.8
Q ss_pred HHhchHHHHHHHHHcCCCCCCCccccCCHHHH
Q 037705 32 VWLKPKKLEKFLRKQGFSGNSYKVFHGDMKEL 63 (96)
Q Consensus 32 ~w~rP~rl~r~Lr~QGi~GPpy~fl~Gn~~E~ 63 (96)
+|.+++| +.+-+.||+.-.++||+.++
T Consensus 27 ~~~~~~~-----~~~~ppgp~~~Pl~G~l~~~ 53 (516)
T PLN02183 27 LISRLRR-----RLPYPPGPKGLPIIGNMLMM 53 (516)
T ss_pred HHhhccC-----CCCCCcCCCCCCeeccHHhc
Confidence 3666665 24678899988999998665
No 13
>PLN02302 ent-kaurenoic acid oxidase
Probab=69.11 E-value=15 Score=28.95 Aligned_cols=16 Identities=19% Similarity=0.134 Sum_probs=12.1
Q ss_pred CCCCCccccCCHHHHH
Q 037705 49 SGNSYKVFHGDMKELA 64 (96)
Q Consensus 49 ~GPpy~fl~Gn~~E~~ 64 (96)
.||++-.++||+.++.
T Consensus 45 Pgp~~~PilG~l~~~~ 60 (490)
T PLN02302 45 PGDLGWPVIGNMWSFL 60 (490)
T ss_pred CCCCCCCccccHHHHH
Confidence 5666678899987764
No 14
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=64.59 E-value=17 Score=21.38 Aligned_cols=19 Identities=21% Similarity=0.188 Sum_probs=11.4
Q ss_pred ChhHHHHHHHHHHHHHHHH
Q 037705 1 MEATLWAVAFSIAFSTAIL 19 (96)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (96)
||....++-+|+.+.+..+
T Consensus 1 M~il~~LIpiSl~l~~~~l 19 (51)
T TIGR00847 1 MEILTILIPISLLLGGVGL 19 (51)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 6777777777754444443
No 15
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=59.07 E-value=29 Score=28.04 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=19.1
Q ss_pred HHHHcCCCCCCCccccCCHHHHH
Q 037705 42 FLRKQGFSGNSYKVFHGDMKELA 64 (96)
Q Consensus 42 ~Lr~QGi~GPpy~fl~Gn~~E~~ 64 (96)
+.|+.|+.||++-.++||+.++.
T Consensus 27 ~~~~~~~p~p~~~pl~G~~~~~~ 49 (500)
T PLN02169 27 HKKPHGQPILKNWPFLGMLPGML 49 (500)
T ss_pred HhccCCCCCCCCCCcccchHHHH
Confidence 45677999999999999987654
No 16
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=57.54 E-value=25 Score=28.26 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhchHHHHHHHHHcCCCCCCCc
Q 037705 23 CAWWMLLNWVWLKPKKLEKFLRKQGFSGNSYK 54 (96)
Q Consensus 23 ~~~~~~~~~~w~rP~rl~r~Lr~QGi~GPpy~ 54 (96)
.....++..+|..|+.+.+.|+|||..=|-.|
T Consensus 286 i~fs~fys~i~~nP~diA~~Lkk~g~~IpGiR 317 (395)
T TIGR02920 286 MLLSYFFTFVNINPKEISKSFRKSGNYIPGIA 317 (395)
T ss_pred HHHHHHHHHheECHHHHHHHHHHCCCCccCcC
Confidence 34455667789999999999999997544443
No 17
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=56.64 E-value=43 Score=20.31 Aligned_cols=31 Identities=10% Similarity=0.038 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037705 2 EATLWAVAFSIAFSTAILAVACAWWMLLNWV 32 (96)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (96)
.-.+....+.+.+++.++++++.+..++..+
T Consensus 2 ~~gl~i~i~Gm~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 2 IEGLQIMIIGMGIVFLVLILLILVISLMSKL 32 (79)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666777777777777777777777765
No 18
>PLN02687 flavonoid 3'-monooxygenase
Probab=56.49 E-value=12 Score=30.06 Aligned_cols=17 Identities=18% Similarity=0.067 Sum_probs=12.4
Q ss_pred CCCCCCCccccCCHHHH
Q 037705 47 GFSGNSYKVFHGDMKEL 63 (96)
Q Consensus 47 Gi~GPpy~fl~Gn~~E~ 63 (96)
...||++-.++||+.++
T Consensus 35 ~pPgp~~~P~iG~~~~~ 51 (517)
T PLN02687 35 LPPGPRGWPVLGNLPQL 51 (517)
T ss_pred CCccCCCCCccccHHhc
Confidence 35677777789998665
No 19
>PLN03112 cytochrome P450 family protein; Provisional
Probab=53.60 E-value=11 Score=30.21 Aligned_cols=16 Identities=19% Similarity=0.206 Sum_probs=13.0
Q ss_pred CCCCCCccccCCHHHH
Q 037705 48 FSGNSYKVFHGDMKEL 63 (96)
Q Consensus 48 i~GPpy~fl~Gn~~E~ 63 (96)
..||++..++||+.++
T Consensus 34 ppgp~~~pl~G~~~~~ 49 (514)
T PLN03112 34 PPGPPRWPIVGNLLQL 49 (514)
T ss_pred ccCCCCCCeeeeHHhc
Confidence 5788888889998665
No 20
>KOG0878 consensus 60S ribosomal protein L32 [Translation, ribosomal structure and biogenesis]
Probab=52.77 E-value=3.9 Score=28.27 Aligned_cols=38 Identities=24% Similarity=0.423 Sum_probs=23.7
Q ss_pred HHHHhchH----HHHHHHHHcC------CCCC--------C--CccccCCHHHHHHHH
Q 037705 30 NWVWLKPK----KLEKFLRKQG------FSGN--------S--YKVFHGDMKELAQTT 67 (96)
Q Consensus 30 ~~~w~rP~----rl~r~Lr~QG------i~GP--------p--y~fl~Gn~~E~~~~~ 67 (96)
...|++|+ |++|+|+.|= ..-+ + -+|++-|++|.--+.
T Consensus 31 ~~~WrkPrGiDnrVrRRFkgqilMPnIgYgsnKkTrh~lP~G~~kflv~nvkele~Ll 88 (124)
T KOG0878|consen 31 KESWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTRHMLPNGFKKFLVHNVKELEVLL 88 (124)
T ss_pred hhhccCCCcchhHHHHHhccceeccccccCCCccceecCChhhhHHhhhhhhHHHHHH
Confidence 44699998 7788888773 2111 1 136788888754433
No 21
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=50.80 E-value=45 Score=27.01 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhchHHHHHHHHHcCCCCCCCc
Q 037705 22 ACAWWMLLNWVWLKPKKLEKFLRKQGFSGNSYK 54 (96)
Q Consensus 22 ~~~~~~~~~~~w~rP~rl~r~Lr~QGi~GPpy~ 54 (96)
...+..++..+|..|+.+.+.|||||--=|..|
T Consensus 292 ii~fs~fys~i~~nP~diAe~lkk~g~~IpGiR 324 (404)
T PRK12417 292 QFLLSYFFSFVNINTKQIAKDMLKSGNYIPGVY 324 (404)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHCCCcccCCC
Confidence 344556777889999999999999996444444
No 22
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=50.10 E-value=37 Score=21.88 Aligned_cols=12 Identities=17% Similarity=0.446 Sum_probs=4.0
Q ss_pred HHHHHHHHHHHH
Q 037705 22 ACAWWMLLNWVW 33 (96)
Q Consensus 22 ~~~~~~~~~~~w 33 (96)
..++|.++..-+
T Consensus 19 aIvvW~iv~ieY 30 (81)
T PF00558_consen 19 AIVVWTIVYIEY 30 (81)
T ss_dssp HHHHHHHH----
T ss_pred HHHHHHHHHHHH
Confidence 345555544333
No 23
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=50.03 E-value=40 Score=18.00 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=21.7
Q ss_pred chHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 037705 35 KPKKLEKFLRKQGFSGNSYKVFHGDMKELAQTT 67 (96)
Q Consensus 35 rP~rl~r~Lr~QGi~GPpy~fl~Gn~~E~~~~~ 67 (96)
.=..|+..|.++||..|+.. .+-.|+.+..
T Consensus 5 s~~~L~~wL~~~gi~~~~~~---~~rd~Ll~~~ 34 (38)
T PF10281_consen 5 SDSDLKSWLKSHGIPVPKSA---KTRDELLKLA 34 (38)
T ss_pred CHHHHHHHHHHcCCCCCCCC---CCHHHHHHHH
Confidence 34578899999999988876 4555555543
No 24
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=48.70 E-value=53 Score=19.12 Aligned_cols=12 Identities=33% Similarity=0.368 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 037705 8 VAFSIAFSTAIL 19 (96)
Q Consensus 8 ~~~~~~~~~~~~ 19 (96)
+.+.+++++|++
T Consensus 22 l~il~~f~~G~l 33 (68)
T PF06305_consen 22 LLILIAFLLGAL 33 (68)
T ss_pred HHHHHHHHHHHH
Confidence 344444555554
No 25
>PF03115 Astro_capsid: Astrovirus capsid protein precursor; InterPro: IPR004337 The astrovirus genome is apparently organised with nonstructural proteins encoded at the 5' end and structural proteins at the 3' end []. Proteins in this family are encoded by astrovirus ORF2, one of the three astrovirus ORFs (1a, 1b, 2). The proteins contain a viral RNA-dependent RNA polymerase motif []. The 87kDa precursor polyprotein undergoes an intracellular cleavage to form a 79kDa protein. Subsequently, extracellular trypsin cleavage yields the three proteins forming the infectious virion [].; PDB: 3QSQ_A 3TS3_D.
Probab=48.55 E-value=5.8 Score=34.98 Aligned_cols=17 Identities=35% Similarity=0.597 Sum_probs=0.0
Q ss_pred HHHHHHHcCCCCCCCcc
Q 037705 39 LEKFLRKQGFSGNSYKV 55 (96)
Q Consensus 39 l~r~Lr~QGi~GPpy~f 55 (96)
++|.|||||..||++.+
T Consensus 65 v~~~l~k~g~~GPk~~~ 81 (787)
T PF03115_consen 65 VKRQLRKKGVTGPKPAV 81 (787)
T ss_dssp -----------------
T ss_pred HhhhhhccCCCCCCcce
Confidence 45679999999999987
No 26
>PLN02738 carotene beta-ring hydroxylase
Probab=47.42 E-value=8.4 Score=32.56 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=17.3
Q ss_pred chHHHHHHHHHcCCCCCCCc
Q 037705 35 KPKKLEKFLRKQGFSGNSYK 54 (96)
Q Consensus 35 rP~rl~r~Lr~QGi~GPpy~ 54 (96)
.|..++..|+++||.||...
T Consensus 104 ~~~~~~~~~~~~~~pgp~la 123 (633)
T PLN02738 104 FPATLRNGLAKLGPPGELLA 123 (633)
T ss_pred chHHHHhhhhhCCCCCchHH
Confidence 48999999999999999643
No 27
>PLN02971 tryptophan N-hydroxylase
Probab=46.64 E-value=38 Score=27.61 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=12.9
Q ss_pred CCCCCCccccCCHHHH
Q 037705 48 FSGNSYKVFHGDMKEL 63 (96)
Q Consensus 48 i~GPpy~fl~Gn~~E~ 63 (96)
..||++-.++||+.++
T Consensus 59 PPGP~~lPiiGnl~~l 74 (543)
T PLN02971 59 PPGPTGFPIVGMIPAM 74 (543)
T ss_pred CcCCCCCCcccchHHh
Confidence 5688888889998766
No 28
>PF12994 DUF3878: Domain of unknown function, E. rectale Gene description (DUF3878); InterPro: IPR024538 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=46.30 E-value=17 Score=28.68 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=21.1
Q ss_pred chHHHHHHHHHcCCCCCCCccccCC
Q 037705 35 KPKKLEKFLRKQGFSGNSYKVFHGD 59 (96)
Q Consensus 35 rP~rl~r~Lr~QGi~GPpy~fl~Gn 59 (96)
+-+++++.|++||++|--|.+.-|+
T Consensus 249 ~~~~~~~~L~e~Gf~G~~p~~~~~~ 273 (299)
T PF12994_consen 249 KRKQAENELKEQGFEGKYPEYQREE 273 (299)
T ss_pred HHHHHHHHHHhcCCcccCcceecCC
Confidence 3566788999999999999888877
No 29
>PF13276 HTH_21: HTH-like domain
Probab=45.41 E-value=22 Score=20.45 Aligned_cols=20 Identities=15% Similarity=0.486 Sum_probs=15.7
Q ss_pred hchHHHHHHHHHcCCCCCCC
Q 037705 34 LKPKKLEKFLRKQGFSGNSY 53 (96)
Q Consensus 34 ~rP~rl~r~Lr~QGi~GPpy 53 (96)
..-+++.+.|++.||..+..
T Consensus 38 v~~krV~RlM~~~gL~~~~r 57 (60)
T PF13276_consen 38 VSRKRVRRLMREMGLRSKRR 57 (60)
T ss_pred ccHHHHHHHHHHcCCcccCC
Confidence 56788888899999887654
No 30
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=45.35 E-value=69 Score=25.64 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=23.1
Q ss_pred hchHHHHHHHHHcCCCCCCCccccCCHHHHHH
Q 037705 34 LKPKKLEKFLRKQGFSGNSYKVFHGDMKELAQ 65 (96)
Q Consensus 34 ~rP~rl~r~Lr~QGi~GPpy~fl~Gn~~E~~~ 65 (96)
..+..+.+.|++.||+=-.+++-+ |..++.+
T Consensus 116 ~t~~~i~~~L~e~Gi~~G~~k~~i-d~~~ie~ 146 (382)
T TIGR02876 116 ETPYEIRKQLKEMGIKPGVWKFSV-DVYKLER 146 (382)
T ss_pred CCHHHHHHHHHHcCCCcCeeeCCC-CHHHHHH
Confidence 589999999999999833444444 7777655
No 31
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=43.92 E-value=7.6 Score=28.29 Aligned_cols=20 Identities=15% Similarity=0.099 Sum_probs=0.0
Q ss_pred HHHHHhchHHHHHHHHHcCC
Q 037705 29 LNWVWLKPKKLEKFLRKQGF 48 (96)
Q Consensus 29 ~~~~w~rP~rl~r~Lr~QGi 48 (96)
+..+=|.+++=||.||+|=.
T Consensus 62 YERLtWT~~AKER~fK~Qfv 81 (171)
T PF04799_consen 62 YERLTWTNKAKERAFKRQFV 81 (171)
T ss_dssp --------------------
T ss_pred HHHHhcCchHHHHHHHHHHH
Confidence 34445899999999999954
No 32
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=43.11 E-value=20 Score=24.04 Aligned_cols=24 Identities=25% Similarity=0.663 Sum_probs=18.4
Q ss_pred hHHHHHHHHHcCCCCCCCccccCC
Q 037705 36 PKKLEKFLRKQGFSGNSYKVFHGD 59 (96)
Q Consensus 36 P~rl~r~Lr~QGi~GPpy~fl~Gn 59 (96)
-..+.+.|++|||+|---++-.|.
T Consensus 25 A~Al~~~L~~~gI~Gk~i~l~T~~ 48 (100)
T PF15643_consen 25 ASALKQFLKQAGIPGKIIRLYTGY 48 (100)
T ss_pred HHHHHHHHHHCCCCceEEEEEecC
Confidence 467889999999999766665543
No 33
>PLN02196 abscisic acid 8'-hydroxylase
Probab=41.86 E-value=37 Score=26.89 Aligned_cols=18 Identities=17% Similarity=0.051 Sum_probs=11.3
Q ss_pred cCCCCCCCccccCCHHHH
Q 037705 46 QGFSGNSYKVFHGDMKEL 63 (96)
Q Consensus 46 QGi~GPpy~fl~Gn~~E~ 63 (96)
.|..||++-.++||..++
T Consensus 35 ~~Ppgp~~~P~iG~~~~~ 52 (463)
T PLN02196 35 PLPPGTMGWPYVGETFQL 52 (463)
T ss_pred CCCCCCCCCCccchHHHH
Confidence 344555455678997664
No 34
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=40.02 E-value=69 Score=17.89 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=12.0
Q ss_pred HHHHhchHHHHHHHHHc
Q 037705 30 NWVWLKPKKLEKFLRKQ 46 (96)
Q Consensus 30 ~~~w~rP~rl~r~Lr~Q 46 (96)
...+++-+++.+.|++|
T Consensus 23 ~~~~~~~r~~~~~l~~~ 39 (46)
T PF04995_consen 23 VWSLRRRRRLRKELKRL 39 (46)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34567788888877765
No 35
>PF08733 PalH: PalH/RIM21; InterPro: IPR014844 PalH (also known as RIM21) is a transmembrane protein required for proteolytic cleavage of Rim101/PacC transcription factors which are activated by C-terminal proteolytic processing. Rim101/PacC family proteins play a key role in pH-dependent responses and PalH has been implicated as a pH sensor [].
Probab=39.72 E-value=83 Score=24.91 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.1
Q ss_pred chHHHHHHHHHcCCCCC
Q 037705 35 KPKKLEKFLRKQGFSGN 51 (96)
Q Consensus 35 rP~rl~r~Lr~QGi~GP 51 (96)
|=.++||+.++||+=|=
T Consensus 317 rie~lEr~~ek~~VLGR 333 (348)
T PF08733_consen 317 RIERLERKEEKEGVLGR 333 (348)
T ss_pred HHHHHHHHHHhcCccCC
Confidence 44578999999999883
No 36
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=39.14 E-value=86 Score=25.98 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=23.8
Q ss_pred HHHHHHHHHHH-----hchHHHHHHHHHcCCCCCCCc
Q 037705 23 CAWWMLLNWVW-----LKPKKLEKFLRKQGFSGNSYK 54 (96)
Q Consensus 23 ~~~~~~~~~~w-----~rP~rl~r~Lr~QGi~GPpy~ 54 (96)
..+..++..+| ..|+.+.+.|+|||..=|-.|
T Consensus 370 i~fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~IpG~R 406 (474)
T PTZ00219 370 LFSCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGYR 406 (474)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCccCcC
Confidence 34455667778 699999999999997555443
No 37
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=37.88 E-value=90 Score=21.40 Aligned_cols=11 Identities=45% Similarity=0.709 Sum_probs=7.8
Q ss_pred ChhHHHHHHHH
Q 037705 1 MEATLWAVAFS 11 (96)
Q Consensus 1 ~~~~~~~~~~~ 11 (96)
|-+++|.++.+
T Consensus 1 ~~~~~w~~i~f 11 (159)
T PRK09173 1 MDATFWAFVGL 11 (159)
T ss_pred CCchHHHHHHH
Confidence 56778877666
No 38
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=34.25 E-value=33 Score=20.65 Aligned_cols=18 Identities=33% Similarity=0.462 Sum_probs=13.9
Q ss_pred HHHHHHHHHcCCCC---CCCc
Q 037705 37 KKLEKFLRKQGFSG---NSYK 54 (96)
Q Consensus 37 ~rl~r~Lr~QGi~G---Ppy~ 54 (96)
-+.++.|+++||.+ |.|+
T Consensus 15 ~~~ek~lk~~gi~~~liP~P~ 35 (73)
T PF11823_consen 15 MKAEKLLKKNGIPVRLIPTPR 35 (73)
T ss_pred HHHHHHHHHCCCcEEEeCCCh
Confidence 36789999999977 5554
No 39
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=34.15 E-value=1.1e+02 Score=24.43 Aligned_cols=34 Identities=15% Similarity=0.351 Sum_probs=27.1
Q ss_pred hchHHHHHHHHHcCCCCCCCccccCCHHHHHHHH
Q 037705 34 LKPKKLEKFLRKQGFSGNSYKVFHGDMKELAQTT 67 (96)
Q Consensus 34 ~rP~rl~r~Lr~QGi~GPpy~fl~Gn~~E~~~~~ 67 (96)
..+..+++.|++.|++=..+++-+.+..++.+-.
T Consensus 119 ~~~~~I~~~L~e~Gi~~G~~k~~id~~~~ie~~l 152 (385)
T PF06898_consen 119 VTEEEILQFLEENGIKPGAWKFKIDSCEEIEKKL 152 (385)
T ss_pred CCHHHHHHHHHHcCCCcCeeecCCChHHHHHHHH
Confidence 6799999999999998777777776677765543
No 40
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=32.60 E-value=34 Score=23.46 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=24.6
Q ss_pred HhchHHHHHHHHHcCCCCCCCccccCCH
Q 037705 33 WLKPKKLEKFLRKQGFSGNSYKVFHGDM 60 (96)
Q Consensus 33 w~rP~rl~r~Lr~QGi~GPpy~fl~Gn~ 60 (96)
+..|..+.+.|++.|++.+.++.+.+.+
T Consensus 125 f~~~~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 125 YLTGEELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred CcCHHHHHHHHHHcCCCcceEEECcchH
Confidence 5689999999999999999998887665
No 41
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=32.32 E-value=39 Score=19.22 Aligned_cols=15 Identities=33% Similarity=0.738 Sum_probs=13.2
Q ss_pred hchHHHHHHHHHcCC
Q 037705 34 LKPKKLEKFLRKQGF 48 (96)
Q Consensus 34 ~rP~rl~r~Lr~QGi 48 (96)
-+|.+-.+.|+++||
T Consensus 15 k~~~~Q~~~L~~~Gi 29 (47)
T PF13986_consen 15 KRPSKQIRWLRRNGI 29 (47)
T ss_pred CCHHHHHHHHHHCCC
Confidence 478888999999998
No 42
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=32.15 E-value=96 Score=17.26 Aligned_cols=17 Identities=29% Similarity=0.556 Sum_probs=11.5
Q ss_pred HHHHhchHHHHHHHHHc
Q 037705 30 NWVWLKPKKLEKFLRKQ 46 (96)
Q Consensus 30 ~~~w~rP~rl~r~Lr~Q 46 (96)
...+++-+++.+.+++|
T Consensus 24 ~~~~~~~r~~~~~l~~~ 40 (45)
T TIGR03141 24 LWSLLDRRRLLRELRRL 40 (45)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34466777887777765
No 43
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=31.00 E-value=1.4e+02 Score=18.61 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=10.7
Q ss_pred hHHHHHHHHHcCCC
Q 037705 36 PKKLEKFLRKQGFS 49 (96)
Q Consensus 36 P~rl~r~Lr~QGi~ 49 (96)
=+.+...|.+||+.
T Consensus 37 ~k~i~~yL~e~gy~ 50 (85)
T PF11337_consen 37 EKAIDWYLQEQGYK 50 (85)
T ss_pred HHHHHHHHHHcCCc
Confidence 45667789999984
No 44
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=30.99 E-value=1.5e+02 Score=19.02 Aligned_cols=30 Identities=7% Similarity=-0.038 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037705 4 TLWAVAFSIAFSTAILAVACAWWMLLNWVW 33 (96)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 33 (96)
.++...+.+.++..++.+++.+.+++..+.
T Consensus 11 ~~~lm~~GM~~VF~fL~lLi~~~~l~~~~~ 40 (85)
T PRK03814 11 AATLMLTGMGVVFIFLTLLVYLVQLMSKLI 40 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455666777777777767766777766554
No 45
>cd00040 CSF2 Granulocyte Macrophage Colony Stimulating Factor (GM-CSF) is a member of the large family of polypeptide growth factors called cytokines. It stimulates a wide variety of hematopoietic and nonhematopoietic cell types via binding to members of the cytokine receptor family, mainly the GM-CSF receptor.
Probab=30.35 E-value=32 Score=23.67 Aligned_cols=35 Identities=31% Similarity=0.499 Sum_probs=20.9
Q ss_pred hchHHHHHHHH--HcCCCCCCCccccCCHHHHHHHHHH
Q 037705 34 LKPKKLEKFLR--KQGFSGNSYKVFHGDMKELAQTTKE 69 (96)
Q Consensus 34 ~rP~rl~r~Lr--~QGi~GPpy~fl~Gn~~E~~~~~~~ 69 (96)
-+|--++.+|+ +||++|.--+ |-|.+.-|.+-.++
T Consensus 50 qepTClQTRL~LYkqGLrGsltk-Lkg~LtmmAshYkq 86 (121)
T cd00040 50 QEPTCLQTRLKLYKQGLRGSLTK-LKGPLTMMASHYKQ 86 (121)
T ss_pred CCccHHHHHHHHHHhhccccHHH-hccHHHHHHHHHHh
Confidence 35666766654 9999995332 45555555544443
No 46
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=29.30 E-value=1.5e+02 Score=18.64 Aligned_cols=28 Identities=7% Similarity=-0.111 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 037705 5 LWAVAFSIAFSTAILAVACAWWMLLNWV 32 (96)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (96)
++...+.|.++..++.++..+.++..++
T Consensus 8 ~~l~v~GM~~VF~fL~lLi~~i~~~~~~ 35 (82)
T TIGR01195 8 ATLTVLGMGIVFLFLSLLIYAVRGMGKV 35 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777766665555555543
No 47
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=28.86 E-value=70 Score=19.40 Aligned_cols=15 Identities=20% Similarity=0.330 Sum_probs=9.6
Q ss_pred chHHHHHHHHHcCCC
Q 037705 35 KPKKLEKFLRKQGFS 49 (96)
Q Consensus 35 rP~rl~r~Lr~QGi~ 49 (96)
.+++-+....++||.
T Consensus 34 eeYk~~Q~~nR~gI~ 48 (58)
T PF15061_consen 34 EEYKKEQKINRAGIK 48 (58)
T ss_pred HHHHHHHHHHHhccc
Confidence 345666677777773
No 48
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=28.35 E-value=94 Score=18.83 Aligned_cols=13 Identities=31% Similarity=0.358 Sum_probs=9.3
Q ss_pred HHHHcCCCCCCCc
Q 037705 42 FLRKQGFSGNSYK 54 (96)
Q Consensus 42 ~Lr~QGi~GPpy~ 54 (96)
.|..=|.+||-|=
T Consensus 16 sLA~CG~KGPLy~ 28 (58)
T COG5567 16 SLAGCGLKGPLYF 28 (58)
T ss_pred HHHhcccCCCccC
Confidence 3456699999773
No 49
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=28.34 E-value=46 Score=21.78 Aligned_cols=36 Identities=11% Similarity=0.297 Sum_probs=22.6
Q ss_pred CCCCCccccCC--HHHHHHHHHHhcCCCCCCCcCcccc
Q 037705 49 SGNSYKVFHGD--MKELAQTTKEAKSRPISLSDDIARR 84 (96)
Q Consensus 49 ~GPpy~fl~Gn--~~E~~~~~~~a~s~p~~~sHDi~pr 84 (96)
+-|-|+.++|. +.|++.+..+....-.=++|++.|+
T Consensus 33 ~~~~p~~~iG~GK~eei~~~~~~~~~d~vvfd~~Lsp~ 70 (95)
T PF13167_consen 33 RKPDPKTYIGSGKVEEIKELIEELDADLVVFDNELSPS 70 (95)
T ss_pred CCCCcceeechhHHHHHHHHHhhcCCCEEEECCCCCHH
Confidence 45778888755 8888886654332222237887775
No 50
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=27.76 E-value=1.4e+02 Score=23.95 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=13.4
Q ss_pred HcCCCCCCCccccCCHHH
Q 037705 45 KQGFSGNSYKVFHGDMKE 62 (96)
Q Consensus 45 ~QGi~GPpy~fl~Gn~~E 62 (96)
++|+.||+.-.++||..+
T Consensus 29 ~~~~pgp~~~p~~G~~~~ 46 (516)
T PLN03195 29 QRNRKGPKSWPIIGAALE 46 (516)
T ss_pred ccccCCCCCCCeecchHH
Confidence 456788887778898754
No 51
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=27.35 E-value=2e+02 Score=19.48 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=15.7
Q ss_pred hHHHHHHHHHcC-CCCCCCccccCC
Q 037705 36 PKKLEKFLRKQG-FSGNSYKVFHGD 59 (96)
Q Consensus 36 P~rl~r~Lr~QG-i~GPpy~fl~Gn 59 (96)
.++++..+++-| +.+++|-.=.|.
T Consensus 86 ~r~l~~~l~~~g~l~~~~lI~~sg~ 110 (121)
T PF11990_consen 86 YRRLQWRLARRGPLGGSRLITRSGA 110 (121)
T ss_pred HHHHHHHHHHhcccCCCCcEEeeCc
Confidence 467777888877 777766544443
No 52
>COG4578 GutM Glucitol operon activator [Transcription]
Probab=26.86 E-value=1.9e+02 Score=20.13 Aligned_cols=28 Identities=21% Similarity=0.503 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhchHHHH---HHHHHcCCCC
Q 037705 21 VACAWWMLLNWVWLKPKKLE---KFLRKQGFSG 50 (96)
Q Consensus 21 ~~~~~~~~~~~~w~rP~rl~---r~Lr~QGi~G 50 (96)
++++...++. ||.=+|.. +.+..||.-|
T Consensus 17 i~w~~q~alg--wwQ~srfq~af~t~~~~G~vg 47 (128)
T COG4578 17 IAWCAQLALG--WWQWSRFQSAFGTFQNQGYVG 47 (128)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHhHHhhCceee
Confidence 3444444443 55445554 4577899855
No 53
>smart00040 CSF2 Granulocyte-macrophage colony-simulating factor (GM-CSF). GM-CSF stimulates the development of and the cytotoxic activity of white blood cells.
Probab=26.48 E-value=41 Score=23.12 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=20.5
Q ss_pred hchHHHHHHHH--HcCCCCCCCccccCCHHHHHHHHH
Q 037705 34 LKPKKLEKFLR--KQGFSGNSYKVFHGDMKELAQTTK 68 (96)
Q Consensus 34 ~rP~rl~r~Lr--~QGi~GPpy~fl~Gn~~E~~~~~~ 68 (96)
-+|--++.+|+ +||++|.--+ |-|.+.-|.+-.+
T Consensus 50 qeptClQtRL~LYkqGLrGslt~-Lkg~LtmmA~hYk 85 (121)
T smart00040 50 QEPTCLQTRLKLYKQGLRGSLTK-LKGPLTMMASHYK 85 (121)
T ss_pred CCCcHHHHHHHHHHhhccccHHH-hhcHHHHHHHHHH
Confidence 35666766655 9999995332 4455555554444
No 54
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=26.41 E-value=75 Score=22.10 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHHHHHH
Q 037705 2 EATLWAVAFSIAFSTA 17 (96)
Q Consensus 2 ~~~~~~~~~~~~~~~~ 17 (96)
.+|.|+.++.....+.
T Consensus 31 D~tpWNysiL~Ls~vv 46 (125)
T PF15048_consen 31 DATPWNYSILALSFVV 46 (125)
T ss_pred CCCCcchHHHHHHHHH
Confidence 3788998877444333
No 55
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.36 E-value=1.5e+02 Score=24.60 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=14.4
Q ss_pred CCCCCCccccCCHHHHHH
Q 037705 48 FSGNSYKVFHGDMKELAQ 65 (96)
Q Consensus 48 i~GPpy~fl~Gn~~E~~~ 65 (96)
-.||++=.++||+.++..
T Consensus 28 PPGP~~lPiIGnl~~l~~ 45 (489)
T KOG0156|consen 28 PPGPPPLPIIGNLHQLGS 45 (489)
T ss_pred CcCCCCCCccccHHHcCC
Confidence 369998888999977754
No 56
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=26.00 E-value=1.5e+02 Score=20.77 Aligned_cols=12 Identities=25% Similarity=0.642 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 037705 22 ACAWWMLLNWVW 33 (96)
Q Consensus 22 ~~~~~~~~~~~w 33 (96)
+..+..+++.+|
T Consensus 133 ~~giy~~~r~~~ 144 (145)
T PF10661_consen 133 CGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHhh
Confidence 334445555555
No 57
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.86 E-value=1.5e+02 Score=18.46 Aligned_cols=12 Identities=33% Similarity=0.279 Sum_probs=6.7
Q ss_pred HHHHHHcCCCCC
Q 037705 40 EKFLRKQGFSGN 51 (96)
Q Consensus 40 ~r~Lr~QGi~GP 51 (96)
.|.=-+||+.-|
T Consensus 56 k~e~lkqgv~~p 67 (69)
T PF04689_consen 56 KRERLKQGVSAP 67 (69)
T ss_pred HHHHHhccCCCC
Confidence 333346887655
No 58
>PRK00124 hypothetical protein; Validated
Probab=25.42 E-value=66 Score=22.83 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=12.9
Q ss_pred hHHHHHHHHHcCCC--CCCC
Q 037705 36 PKKLEKFLRKQGFS--GNSY 53 (96)
Q Consensus 36 P~rl~r~Lr~QGi~--GPpy 53 (96)
-|-+-..||+||.+ ||++
T Consensus 108 ~R~~~~~lR~~G~~t~Gp~~ 127 (151)
T PRK00124 108 MRDLMATLRRSGIRTGGPKP 127 (151)
T ss_pred HHHHHHHHHHcCCCCCCCCC
Confidence 45566789999975 5655
No 59
>COG3214 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.03 E-value=73 Score=26.12 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=28.7
Q ss_pred HHHHHHcCCCCCCCcccc-CCHHHHHHHHHHhcCCCCCC---CcC--ccccccchHHHH
Q 037705 40 EKFLRKQGFSGNSYKVFH-GDMKELAQTTKEAKSRPISL---SDD--IARRILPFHHHI 92 (96)
Q Consensus 40 ~r~Lr~QGi~GPpy~fl~-Gn~~E~~~~~~~a~s~p~~~---sHD--i~prV~P~~~~w 92 (96)
+-.|.+||+.+||++-.- .++.++..-..--.-++++. +|+ +.+|+-||=..|
T Consensus 12 ri~LAaQGl~~~~~~~~~~~dl~~~is~lg~lQiDsI~~v~Rahyl~LfSRlg~Y~~~~ 70 (400)
T COG3214 12 RIALAAQGLLAPPRRAASKRDLLATISRLGLLQIDSINAVARAHYLPLFSRLGTYRAAL 70 (400)
T ss_pred HHHHHhhhccCCCccCCChHHHHHHHHHccceeecccchhhhccccchhhhcCCccHHH
Confidence 347899999999996542 34444322211112233332 676 456666664443
No 60
>PF06842 DUF1242: Protein of unknown function (DUF1242); InterPro: IPR009653 This family consists of a number of eukaryotic proteins of around 72 residues in length. The function of this family is unknown.
Probab=24.90 E-value=37 Score=18.61 Aligned_cols=25 Identities=24% Similarity=0.502 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhchHHHHHHHHHcCCCCC
Q 037705 24 AWWMLLNWVWLKPKKLEKFLRKQGFSGN 51 (96)
Q Consensus 24 ~~~~~~~~~w~rP~rl~r~Lr~QGi~GP 51 (96)
+....+...+ |.-+.+ =++.|++|.
T Consensus 10 CTCtYir~~~--P~l~dr-~kk~G~~G~ 34 (36)
T PF06842_consen 10 CTCTYIRSIF--PSLLDR-NKKTGFRGV 34 (36)
T ss_pred HHhHhHHhHC--cccccc-CCCcccccc
Confidence 3334444433 776666 234899884
No 61
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=24.70 E-value=1.2e+02 Score=20.16 Aligned_cols=35 Identities=29% Similarity=0.488 Sum_probs=27.3
Q ss_pred HHHHHHHHcCC---CCCCCccccCCHHHHHHHHHHhcC
Q 037705 38 KLEKFLRKQGF---SGNSYKVFHGDMKELAQTTKEAKS 72 (96)
Q Consensus 38 rl~r~Lr~QGi---~GPpy~fl~Gn~~E~~~~~~~a~s 72 (96)
+..+.|+++|+ -||-.+.+=||+.|+.+..+++..
T Consensus 25 ~~i~~lk~~glky~~~pm~T~iEg~~del~~~ik~~~E 62 (100)
T COG0011 25 EAIEILKESGLKYQLGPMGTVIEGELDELMEAVKEAHE 62 (100)
T ss_pred HHHHHHHHcCCceeecCcceEEEecHHHHHHHHHHHHH
Confidence 45678999998 488889999999998776655433
No 62
>smart00843 Ftsk_gamma This domain directs oriented DNA translocation and forms a winged helix structure. Mutated proteins with substitutions in the FtsK gamma DNA-recognition helix are impaired in DNA binding.
Probab=24.35 E-value=1.2e+02 Score=18.47 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=22.1
Q ss_pred HHHHHHHHHhchHHHHHHHHHcCCCCCC
Q 037705 25 WWMLLNWVWLKPKKLEKFLRKQGFSGNS 52 (96)
Q Consensus 25 ~~~~~~~~w~rP~rl~r~Lr~QGi~GPp 52 (96)
+=|-+..-+=|..|+-..|.+.||-||+
T Consensus 25 lQR~~~IGynrAariid~lE~~GiV~p~ 52 (63)
T smart00843 25 LQRRLRIGYNRAARLIDQLEEEGIVGPA 52 (63)
T ss_pred HHHHHhcchhHHHHHHHHHHHCcCCCCC
Confidence 3455555677888999999999999985
No 63
>COG5182 CUS1 Splicing factor 3b, subunit 2 [RNA processing and modification]
Probab=24.23 E-value=25 Score=28.64 Aligned_cols=31 Identities=10% Similarity=0.307 Sum_probs=22.6
Q ss_pred HHHHHHcCCCCCC----Ccccc-CCHHHHHHHHHHh
Q 037705 40 EKFLRKQGFSGNS----YKVFH-GDMKELAQTTKEA 70 (96)
Q Consensus 40 ~r~Lr~QGi~GPp----y~fl~-Gn~~E~~~~~~~a 70 (96)
.++|-.||..||. |+.+. -++.||++++.+.
T Consensus 182 ~~ylsg~~~~~~r~felP~~I~~TgI~qmR~~~~e~ 217 (429)
T COG5182 182 SRYLSGHGYHKPRPFELPRHIIGTGIPQMRRMMRER 217 (429)
T ss_pred hhcccccccCCCCcccchHHHhhcChHHHHHhhhhc
Confidence 3578899999986 33344 4699999987664
No 64
>PF12404 DUF3663: Peptidase ; InterPro: IPR008330 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This family represents the peptidase B group of leucyl aminopeptidases, which are restricted to the gammaproteobacteria. They contain a C-terminal aminopeptidase catalytic domain and an N-terminal domain of unknown function. They are zinc-dependent exopeptidases (3.4.11.1 from EC) and belong to MEROPS peptidase family M17 (leucyl aminopeptidase family, clan MF). They selectively release N-terminal amino acid residues from polypeptides and proteins and are involved in the processing, catabolism and degradation of intracellular proteins [, , ]. Leucyl aminopeptidase forms a homohexamer containing two trimers stacked on top of one another []. Each monomer binds two zinc ions. The zinc-binding and catalytic sites are located within the C-terminal catalytic domain []. The same catalytic aminopeptidase domain is found in the other M17 peptidases IPR011356 from INTERPRO. These two groups of aminopeptidases differ by their N-terminal domains. The N-terminal domain in members of IPR011356 from INTERPRO has been implicated in DNA binding [, ] and it is not associated with members of this family which have a different N-terminal domain and therefore are not expected to bind DNA or be involved in transcriptional regulation. In addition, there are related proteins with the same catalytic domain and unique N-terminal sequences unrelated to any of the two N-terminal domains discussed above. For additional information please see [, , , ]. ; GO: 0004177 aminopeptidase activity, 0008235 metalloexopeptidase activity, 0030145 manganese ion binding, 0005737 cytoplasm
Probab=23.76 E-value=54 Score=20.91 Aligned_cols=13 Identities=23% Similarity=0.368 Sum_probs=10.0
Q ss_pred HHHHHHHHcCCCC
Q 037705 38 KLEKFLRKQGFSG 50 (96)
Q Consensus 38 rl~r~Lr~QGi~G 50 (96)
|-.|+|+.|||+-
T Consensus 42 rAaRkLd~qGI~~ 54 (77)
T PF12404_consen 42 RAARKLDGQGIKN 54 (77)
T ss_pred HHHHHHhhCCCce
Confidence 4467899999964
No 65
>COG2454 Uncharacterized conserved protein [Function unknown]
Probab=23.48 E-value=58 Score=24.55 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCCCCCC
Q 037705 37 KKLEKFLRKQGFSGNSY 53 (96)
Q Consensus 37 ~rl~r~Lr~QGi~GPpy 53 (96)
.++|+.|+++||.|--+
T Consensus 147 ~~i~~~mK~~~I~g~~~ 163 (211)
T COG2454 147 GRIEEKMKSLGIPGEAS 163 (211)
T ss_pred HHHHHHHHhcCCCceeE
Confidence 47899999999999654
No 66
>PLN02966 cytochrome P450 83A1
Probab=23.03 E-value=79 Score=25.29 Aligned_cols=17 Identities=24% Similarity=0.124 Sum_probs=13.6
Q ss_pred CCCCCCCccccCCHHHH
Q 037705 47 GFSGNSYKVFHGDMKEL 63 (96)
Q Consensus 47 Gi~GPpy~fl~Gn~~E~ 63 (96)
=..||++..++||+.++
T Consensus 30 ~ppgp~~~p~~G~l~~l 46 (502)
T PLN02966 30 LPPGPSPLPVIGNLLQL 46 (502)
T ss_pred CCcCCCCCCeeccHHhc
Confidence 46888888899998765
No 67
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=22.93 E-value=61 Score=21.11 Aligned_cols=17 Identities=18% Similarity=0.550 Sum_probs=12.2
Q ss_pred hchHHHHHHHHHcCCCC
Q 037705 34 LKPKKLEKFLRKQGFSG 50 (96)
Q Consensus 34 ~rP~rl~r~Lr~QGi~G 50 (96)
+.|++|+..|++.||..
T Consensus 43 ~G~~~I~~~L~~kGi~~ 59 (121)
T PF02631_consen 43 KGPRRIRQKLKQKGIDR 59 (121)
T ss_dssp --HHHHHHHHHHTT--H
T ss_pred ccHHHHHHHHHHHCCCh
Confidence 57999999999999954
No 68
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=22.47 E-value=2.4e+02 Score=23.25 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=9.5
Q ss_pred hhHHHHHHHHHHHHHHH
Q 037705 2 EATLWAVAFSIAFSTAI 18 (96)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (96)
|.++|.++++.+.+.++
T Consensus 38 e~Sl~~lv~~~ii~lvv 54 (400)
T COG3071 38 EMSLTTLVIFLIIALVV 54 (400)
T ss_pred eeeHHHHHHHHHHHHHH
Confidence 45666666664444444
No 69
>PF15050 SCIMP: SCIMP protein
Probab=21.93 E-value=2.8e+02 Score=19.42 Aligned_cols=9 Identities=22% Similarity=0.420 Sum_probs=4.5
Q ss_pred HHHHHcCCC
Q 037705 41 KFLRKQGFS 49 (96)
Q Consensus 41 r~Lr~QGi~ 49 (96)
|.+.+||=+
T Consensus 32 R~~lRqGkk 40 (133)
T PF15050_consen 32 RWQLRQGKK 40 (133)
T ss_pred HHHHHcccc
Confidence 344566643
No 70
>PHA03093 EEV glycoprotein; Provisional
Probab=21.79 E-value=1.2e+02 Score=22.52 Aligned_cols=17 Identities=29% Similarity=0.212 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 037705 7 AVAFSIAFSTAILAVAC 23 (96)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ 23 (96)
+++||+++++++++++.
T Consensus 42 siiiSIlsL~~i~~~LA 58 (185)
T PHA03093 42 SIIISILSLIAITATLA 58 (185)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57788888888765443
No 71
>KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism]
Probab=21.79 E-value=73 Score=27.71 Aligned_cols=32 Identities=31% Similarity=0.649 Sum_probs=25.1
Q ss_pred HHHHHHHHhchHHHHHHHHHcCCCCCCCccccCCHHHH
Q 037705 26 WMLLNWVWLKPKKLEKFLRKQGFSGNSYKVFHGDMKEL 63 (96)
Q Consensus 26 ~~~~~~~w~rP~rl~r~Lr~QGi~GPpy~fl~Gn~~E~ 63 (96)
.+++| ||.|-.- ..|||+|-..++--|.+.|-
T Consensus 741 Grl~N--WWSP~a~----ESq~IkGRafNLkqGemeeT 772 (838)
T KOG0630|consen 741 GRLFN--WWSPLAK----ESQGIKGRAFNLKQGEMEET 772 (838)
T ss_pred hhhhh--ccCCCCc----cccCcccceeccccccchhh
Confidence 34555 8888764 37999999999999998774
No 72
>PF10515 APP_amyloid: beta-amyloid precursor protein C-terminus; InterPro: IPR019543 This is the amyloid, C-terminal, protein of the beta-Amyloid precursor protein (APP) which is a conserved and ubiquitous transmembrane glycoprotein strongly implicated in the pathogenesis of Alzheimer's disease but whose normal biological function is unknown. The C-terminal 100 residues are released and aggregate into amyloid deposits which are strongly implicated in the pathology of Alzheimer's disease plaque-formation. The domain is associated with IPR008154 from INTERPRO, further towards the N terminus. ; PDB: 2ROZ_A 3DXD_D 1X11_D 2LP1_A 2LOH_A 3MXC_L 3MXY_L 3DXC_B 3DXE_D 3L81_B ....
Probab=21.73 E-value=26 Score=20.87 Aligned_cols=15 Identities=27% Similarity=0.722 Sum_probs=13.0
Q ss_pred HHHHcCCCCCCCccc
Q 037705 42 FLRKQGFSGNSYKVF 56 (96)
Q Consensus 42 ~Lr~QGi~GPpy~fl 56 (96)
.|+..|..-|.|+|+
T Consensus 37 ~mQ~nGYENPTYkyf 51 (52)
T PF10515_consen 37 NMQNNGYENPTYKYF 51 (52)
T ss_dssp HHHCTEEESCTCHHC
T ss_pred HHHhcCCcCCceecc
Confidence 588899999999986
No 73
>KOG4631 consensus NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit [Energy production and conversion]
Probab=21.46 E-value=64 Score=21.47 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.0
Q ss_pred HHHHHHHHcCCCCCCCc
Q 037705 38 KLEKFLRKQGFSGNSYK 54 (96)
Q Consensus 38 rl~r~Lr~QGi~GPpy~ 54 (96)
.++++|.+||++-|--|
T Consensus 27 ~~~k~La~~GLkDPW~R 43 (100)
T KOG4631|consen 27 TIQKKLAAKGLKDPWGR 43 (100)
T ss_pred HHHHHHHHccccCchhc
Confidence 57899999999988544
No 74
>PF03773 DUF318: Predicted permease; InterPro: IPR005524 This family of predicted integral membrane proteins.
Probab=21.12 E-value=2.9e+02 Score=21.03 Aligned_cols=21 Identities=29% Similarity=0.643 Sum_probs=17.7
Q ss_pred HHHhchHHHHHHHHHcCCCCC
Q 037705 31 WVWLKPKKLEKFLRKQGFSGN 51 (96)
Q Consensus 31 ~~w~rP~rl~r~Lr~QGi~GP 51 (96)
..|..+.+++|.|.+.|++|-
T Consensus 32 ~~~v~~~~~~~~l~~~~~~~~ 52 (307)
T PF03773_consen 32 QVFVPREKVARWLGRSGFKGI 52 (307)
T ss_pred HHHCCHHHHHHHcCCCcchHH
Confidence 457889999999999998873
No 75
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=20.75 E-value=2.1e+02 Score=23.51 Aligned_cols=27 Identities=15% Similarity=0.262 Sum_probs=20.0
Q ss_pred HHHHHHHHHhchHHHHHHHHHcCCCCC
Q 037705 25 WWMLLNWVWLKPKKLEKFLRKQGFSGN 51 (96)
Q Consensus 25 ~~~~~~~~w~rP~rl~r~Lr~QGi~GP 51 (96)
+..++.++=..|+.+.+.|+|||-.=|
T Consensus 323 Fs~fyt~i~~nP~~iAenL~k~G~~IP 349 (434)
T PRK12907 323 FTYFYAFIQVNPEQMAENLKKQNGYVP 349 (434)
T ss_pred HHHHHHHHccCHHHHHHHHHHCCCcCC
Confidence 334455556899999999999995333
No 76
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.61 E-value=2.2e+02 Score=19.16 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Q 037705 14 FSTAILAVACAWWMLLNWVWLKPKKLEKFLR 44 (96)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~w~rP~rl~r~Lr 44 (96)
+++|++ +.+++.|+...---.-..+++.|.
T Consensus 6 lvvG~i-iG~~~~r~~~~~~~~q~~l~~eL~ 35 (128)
T PF06295_consen 6 LVVGLI-IGFLIGRLTSSNQQKQAKLEQELE 35 (128)
T ss_pred HHHHHH-HHHHHHHHhccchhhHHHHHHHHH
Confidence 344442 444445554333233345554443
No 77
>PF11233 DUF3035: Protein of unknown function (DUF3035); InterPro: IPR021395 This family of proteins with unknown function appear to be restricted to Alphaproteobacteria.
Probab=20.30 E-value=84 Score=22.38 Aligned_cols=21 Identities=24% Similarity=0.158 Sum_probs=18.2
Q ss_pred HhchHHHHHHHHHcCCCCCCC
Q 037705 33 WLKPKKLEKFLRKQGFSGNSY 53 (96)
Q Consensus 33 w~rP~rl~r~Lr~QGi~GPpy 53 (96)
++.+..-..+||++|+.||+.
T Consensus 135 ~ld~~aE~~R~r~~g~~~psa 155 (157)
T PF11233_consen 135 ALDAQAENERLRRAGALTPSA 155 (157)
T ss_pred ccChHHHHHHHHHhcccCCCC
Confidence 577888889999999999874
No 78
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=20.26 E-value=78 Score=23.55 Aligned_cols=13 Identities=46% Similarity=0.675 Sum_probs=11.6
Q ss_pred HHHHHHHHHcCCC
Q 037705 37 KKLEKFLRKQGFS 49 (96)
Q Consensus 37 ~rl~r~Lr~QGi~ 49 (96)
+.+|+.||++||+
T Consensus 160 ~~~R~~Lrk~~~~ 172 (231)
T cd00755 160 RKVRKRLRKRGIF 172 (231)
T ss_pred HHHHHHHHHcCCC
Confidence 5789999999997
No 79
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=20.22 E-value=3.7e+02 Score=21.87 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHcCCCCCCCccc
Q 037705 3 ATLWAVAFSIAFSTAI-LAVACAWWMLLNWVWLKPKKLEKFLRKQGFSGNSYKVF 56 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~w~rP~rl~r~Lr~QGi~GPpy~fl 56 (96)
-.+|...-+..+++.. +.+.+.+.+++. ||--...++..+. +.-+|+|..+
T Consensus 234 gaL~~~~~~v~~~~stgl~~~vFflqfld--WWyssd~~~~~k~-~l~~p~PpPP 285 (357)
T KOG0826|consen 234 GALKKAVRGVAFSLSTGLSVGVFFLQFLD--WWYSSDNQRKIKS-TLDPPIPPPP 285 (357)
T ss_pred hHHHHHHhhHHHHHHhhHHHHHHHHHHHH--HHhcchHHHhhcc-CCCCCCCcCC
Confidence 3455555555555542 222333446665 7777777777777 9999988877
No 80
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=20.20 E-value=3e+02 Score=22.25 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=17.2
Q ss_pred HhchHHHHHHHHHcCCCCCCCc
Q 037705 33 WLKPKKLEKFLRKQGFSGNSYK 54 (96)
Q Consensus 33 w~rP~rl~r~Lr~QGi~GPpy~ 54 (96)
=..|+.+.+.|+|||..=|-.|
T Consensus 317 ~~~p~~iA~~Lkk~g~~IpGvR 338 (417)
T CHL00161 317 VLNPKDISENLQKMAVSIPGIR 338 (417)
T ss_pred hcCHHHHHHHHHHCCCcCCCcC
Confidence 3799999999999997444333
Done!