Query 037705
Match_columns 96
No_of_seqs 104 out of 393
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 05:28:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nxu_A Cytochrome P450 3A4; al 92.1 0.064 2.2E-06 40.2 2.0 23 41-63 9-31 (485)
2 3s79_A Cytochrome P450 19A1; o 80.9 0.97 3.3E-05 33.9 2.7 22 44-65 43-64 (503)
3 2lx0_A Membrane fusion protein 74.3 5.8 0.0002 20.2 3.7 25 4-28 4-28 (32)
4 3mk7_C Cytochrome C oxidase, C 61.2 8.7 0.0003 28.2 3.9 18 2-19 1-18 (311)
5 2cd8_A Cytochrome P450 monooxy 49.2 4.8 0.00017 30.2 0.7 17 45-61 25-41 (436)
6 3iz5_h 60S ribosomal protein L 40.7 2.5 8.7E-05 28.6 -1.8 28 54-81 74-101 (133)
7 3k9v_A 1,25-dihydroxyvitamin D 40.6 19 0.00066 26.3 2.9 18 47-64 25-42 (482)
8 3me7_A Putative uncharacterize 40.6 34 0.0012 22.1 3.8 34 35-68 77-111 (170)
9 2l2t_A Receptor tyrosine-prote 40.5 9.6 0.00033 21.0 0.9 12 28-39 28-39 (44)
10 3ld6_A Lanosterol 14-alpha dem 36.0 20 0.00067 26.5 2.3 20 46-65 8-31 (461)
11 1vq8_X 50S ribosomal protein L 31.7 20 0.00069 22.6 1.5 18 38-55 54-71 (92)
12 2wwb_A Protein transport prote 30.5 1.8E+02 0.0063 22.9 7.2 32 24-55 370-406 (476)
13 4a17_X RPL32, 60S ribosomal pr 30.2 2.5 8.6E-05 28.7 -3.2 50 32-81 33-102 (134)
14 4hde_A SCO1/SENC family lipopr 29.7 56 0.0019 21.1 3.5 35 35-69 82-117 (170)
15 3swz_A Steroid 17-alpha-hydrox 28.5 7.7 0.00026 28.9 -1.1 18 45-62 4-24 (494)
16 2ww9_A SEC sixty-one protein h 28.4 63 0.0022 25.7 4.2 27 27-53 379-412 (490)
17 2ks1_B Epidermal growth factor 28.0 7.9 0.00027 21.3 -0.8 11 28-38 29-39 (44)
18 1u57_A GAG polyprotein, HIV-1; 27.6 17 0.00059 19.7 0.6 10 45-54 8-17 (48)
19 2zkr_x 60S ribosomal protein L 25.5 34 0.0012 22.7 1.8 18 38-55 67-84 (125)
20 4a17_W RPL31, 60S ribosomal pr 24.7 37 0.0013 22.1 1.8 19 38-56 53-71 (111)
21 2knc_A Integrin alpha-IIB; tra 24.1 99 0.0034 17.5 3.4 8 4-11 11-18 (54)
22 3e6i_A CYPIIE1, P450-J, cytoch 24.0 27 0.00092 25.6 1.2 16 48-63 12-27 (476)
23 2l8s_A Integrin alpha-1; trans 23.9 1E+02 0.0035 17.5 3.4 9 3-11 7-15 (54)
24 3dkt_A Maritimacin; enzyme enc 23.3 21 0.00072 26.3 0.5 18 41-59 157-174 (265)
25 3u5e_d L34, YL28, 60S ribosoma 23.0 41 0.0014 21.9 1.8 19 38-56 54-72 (113)
26 2ij2_A Cytochrome P450 BM3; mo 22.9 30 0.001 25.7 1.3 18 46-63 3-20 (470)
27 1po5_A Cytochrome P450 2B4; ox 22.3 29 0.001 25.7 1.1 18 46-63 10-27 (476)
28 3j21_a 50S ribosomal protein L 22.1 45 0.0015 21.1 1.8 18 38-55 53-70 (95)
29 1r9o_A Cytochrome P450 2C9; mo 22.1 30 0.001 25.6 1.1 18 46-63 11-28 (477)
30 2hi4_A Cytochrome P450 1A2; CY 21.3 29 0.00098 26.0 0.9 17 47-63 17-33 (495)
31 3d0f_A Penicillin-binding 1 tr 21.3 27 0.00094 21.5 0.7 13 45-57 1-13 (106)
32 1neq_A DNA-binding protein NER 20.4 50 0.0017 19.1 1.7 15 34-48 9-23 (74)
33 3dxe_B Amyloid beta A4 protein 20.2 12 0.00041 19.7 -1.0 16 41-56 15-30 (35)
No 1
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold, hemoprotein, monoo cytochrome P450 reductase, endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A* 1tqn_A* 3ua1_A* 3tjs_A*
Probab=92.09 E-value=0.064 Score=40.23 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.0
Q ss_pred HHHHHcCCCCCCCccccCCHHHH
Q 037705 41 KFLRKQGFSGNSYKVFHGDMKEL 63 (96)
Q Consensus 41 r~Lr~QGi~GPpy~fl~Gn~~E~ 63 (96)
..++++|+.||++-.++||+.++
T Consensus 9 ~~~k~~~~PGP~~~PliGn~~~~ 31 (485)
T 3nxu_A 9 GLFKKLGIPGPTPLPFLGNILSY 31 (485)
T ss_dssp THHHHHTCCCCCCBTTTBTGGGG
T ss_pred hHHhhCCCCCCCCcCeecCcHHh
Confidence 46789999999999999998654
No 2
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo sapiens} PDB: 3eqm_A* 3s7s_A* 4gl5_A* 4gl7_A*
Probab=80.86 E-value=0.97 Score=33.87 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=17.6
Q ss_pred HHcCCCCCCCccccCCHHHHHH
Q 037705 44 RKQGFSGNSYKVFHGDMKELAQ 65 (96)
Q Consensus 44 r~QGi~GPpy~fl~Gn~~E~~~ 65 (96)
+++++.||++-.++||+.++.+
T Consensus 43 ~~~~pPGP~~~P~iGnl~~~~~ 64 (503)
T 3s79_A 43 GTSSIPGPGYCMGIGPLISHGR 64 (503)
T ss_dssp --CCCCSCCCCSSSHHHHHHHH
T ss_pred ccCCCCCCCCCceeeehhcccc
Confidence 4579999999999999988754
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=74.29 E-value=5.8 Score=20.18 Aligned_cols=25 Identities=20% Similarity=0.309 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 037705 4 TLWAVAFSIAFSTAILAVACAWWML 28 (96)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (96)
|+|-++-..+.++.++++.+|+.+.
T Consensus 4 tiweviaglvalltflafgfwlfky 28 (32)
T 2lx0_A 4 TIWEVIAGLVALLTFLAFGFWLFKY 28 (32)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788887777777777666655543
No 4
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=61.20 E-value=8.7 Score=28.21 Aligned_cols=18 Identities=17% Similarity=0.337 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 037705 2 EATLWAVAFSIAFSTAIL 19 (96)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~ 19 (96)
+.++|+++|++++++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (311)
T 3mk7_C 1 MSTFWSGYIALLTLGTIV 18 (311)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHH
Confidence 468999999977777765
No 5
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide monooxygenase, antibiotic biosynthesis, heme, iron, metal-binding; HET: HEM PXI; 1.7A {Streptomyces venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A* 2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Probab=49.19 E-value=4.8 Score=30.20 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=7.2
Q ss_pred HcCCCCCCCccccCCHH
Q 037705 45 KQGFSGNSYKVFHGDMK 61 (96)
Q Consensus 45 ~QGi~GPpy~fl~Gn~~ 61 (96)
++|+.||++-+++||..
T Consensus 25 ~~~~PGP~~~p~lG~~~ 41 (436)
T 2cd8_A 25 QQGTTASPPVLDLGALG 41 (436)
T ss_dssp ---------CCBHHHHH
T ss_pred ccCCCCCCccccCCCCC
Confidence 58999999999999976
No 6
>3iz5_h 60S ribosomal protein L32 (L32E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_h 2zkr_9
Probab=40.71 E-value=2.5 Score=28.62 Aligned_cols=28 Identities=11% Similarity=0.180 Sum_probs=17.6
Q ss_pred ccccCCHHHHHHHHHHhcCCCCCCCcCc
Q 037705 54 KVFHGDMKELAQTTKEAKSRPISLSDDI 81 (96)
Q Consensus 54 ~fl~Gn~~E~~~~~~~a~s~p~~~sHDi 81 (96)
.|++-|.+|+..+....++....+.|.+
T Consensus 74 ~~lV~NvkeLe~L~m~n~~~aaeIAh~V 101 (133)
T 3iz5_h 74 KFVVHNVSELELLMMHNRTYCAEIAHNV 101 (133)
T ss_dssp EEEESSHHHHHHHHHHTTSEEEEECSSS
T ss_pred EEEeCCHHHHHHHhcCCCccEEEEecCc
Confidence 3788999998776644444444445554
No 7
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial; mitochondrial cytochrome P450, monotopic membrane protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus norvegicus} PDB: 3k9y_A*
Probab=40.64 E-value=19 Score=26.34 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=15.6
Q ss_pred CCCCCCCccccCCHHHHH
Q 037705 47 GFSGNSYKVFHGDMKELA 64 (96)
Q Consensus 47 Gi~GPpy~fl~Gn~~E~~ 64 (96)
.+.||++-.++||+.++.
T Consensus 25 ~~PGP~~~p~iG~~~~~~ 42 (482)
T 3k9v_A 25 DLPGPTNWPLLGSLLEIF 42 (482)
T ss_dssp GCCCSCCCTTTBTHHHHH
T ss_pred CCCCCCCCCccccHHHHh
Confidence 589999999999998874
No 8
>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A
Probab=40.56 E-value=34 Score=22.07 Aligned_cols=34 Identities=18% Similarity=0.429 Sum_probs=26.6
Q ss_pred chHHHHHHHHHcCCCCCCCcccc-CCHHHHHHHHH
Q 037705 35 KPKKLEKFLRKQGFSGNSYKVFH-GDMKELAQTTK 68 (96)
Q Consensus 35 rP~rl~r~Lr~QGi~GPpy~fl~-Gn~~E~~~~~~ 68 (96)
.|..+++..++.|+..|.+.|+. |+..++.++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~w~~l~~~~~~~~~~~~~ 111 (170)
T 3me7_A 77 TLEDIKRFQKEYGIDGKGWKVVKAKTSEDLFKLLD 111 (170)
T ss_dssp CHHHHHHHHHHTTCCSSSEEEEEESSHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCeEEEeCCCHHHHHHHHH
Confidence 46788999999999988888854 77777776654
No 9
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=40.50 E-value=9.6 Score=21.02 Aligned_cols=12 Identities=25% Similarity=0.368 Sum_probs=5.8
Q ss_pred HHHHHHhchHHH
Q 037705 28 LLNWVWLKPKKL 39 (96)
Q Consensus 28 ~~~~~w~rP~rl 39 (96)
+..++++|-++.
T Consensus 28 ~~~~~~~RRRr~ 39 (44)
T 2l2t_A 28 LTFAVYVRRKSI 39 (44)
T ss_dssp HHHHHHHHTTCS
T ss_pred HHHHHHhhhhhh
Confidence 444555554443
No 10
>3ld6_A Lanosterol 14-alpha demethylase; cytochrome P450, ketoconazole, S genomics, structural genomics consortium, SGC; HET: HEM KKK BCD; 2.80A {Homo sapiens} PDB: 3juv_A* 3jus_A*
Probab=36.00 E-value=20 Score=26.53 Aligned_cols=20 Identities=20% Similarity=0.478 Sum_probs=12.4
Q ss_pred cCCCCCCCc---c-ccCCHHHHHH
Q 037705 46 QGFSGNSYK---V-FHGDMKELAQ 65 (96)
Q Consensus 46 QGi~GPpy~---f-l~Gn~~E~~~ 65 (96)
.|.++||.- + ++||+.++.+
T Consensus 8 ~g~~~PP~~~~~lP~iG~~~~~~~ 31 (461)
T 3ld6_A 8 AGVKSPPYIFSPIPFLGHAIAFGK 31 (461)
T ss_dssp --CCCCCBCCCSSTTTBTHHHHHH
T ss_pred cCCCCCCCCCCCcCeeeeHHHhhh
Confidence 477777743 3 6899887643
No 11
>1vq8_X 50S ribosomal protein L31E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.29.1.1 PDB: 1vq4_X* 1vq5_X* 1vq6_X* 1vq7_X* 1s72_X* 1vq9_X* 1vqk_X* 1vql_X* 1vqm_X* 1vqn_X* 1vqo_X* 1vqp_X* 1yhq_X* 1yi2_X* 1yij_X* 1yit_X* 1yj9_X* 1yjn_X* 1yjw_X* 2otj_X* ...
Probab=31.72 E-value=20 Score=22.58 Aligned_cols=18 Identities=11% Similarity=0.209 Sum_probs=14.8
Q ss_pred HHHHHHHHcCCCCCCCcc
Q 037705 38 KLEKFLRKQGFSGNSYKV 55 (96)
Q Consensus 38 rl~r~Lr~QGi~GPpy~f 55 (96)
+|-+..=.+||+.||+++
T Consensus 54 ~LNk~iW~rGir~vP~rI 71 (92)
T 1vq8_X 54 SINEAAWARGRANTPSKI 71 (92)
T ss_dssp HHHHHHTTTCSSCCCSEE
T ss_pred HHHHHHHhcccCCCCceE
Confidence 456677799999999986
No 12
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=30.48 E-value=1.8e+02 Score=22.93 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=23.1
Q ss_pred HHHHHHHHHH-----hchHHHHHHHHHcCCCCCCCcc
Q 037705 24 AWWMLLNWVW-----LKPKKLEKFLRKQGFSGNSYKV 55 (96)
Q Consensus 24 ~~~~~~~~~w-----~rP~rl~r~Lr~QGi~GPpy~f 55 (96)
....++...| ..|+.+.+.|+|||..=|-.|-
T Consensus 370 ~f~~fyt~~Wv~i~g~np~dvA~~Lkk~G~~IpGiRp 406 (476)
T 2wwb_A 370 GSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRE 406 (476)
T ss_dssp HHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTTCCCCT
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHcCCccCCCCc
Confidence 3445556667 6999999999999965554443
No 13
>4a17_X RPL32, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_X 4a1c_X 4a1e_X
Probab=30.17 E-value=2.5 Score=28.66 Aligned_cols=50 Identities=18% Similarity=0.392 Sum_probs=29.4
Q ss_pred HHhchHHH----HHHHHHc------CCCCCC----------CccccCCHHHHHHHHHHhcCCCCCCCcCc
Q 037705 32 VWLKPKKL----EKFLRKQ------GFSGNS----------YKVFHGDMKELAQTTKEAKSRPISLSDDI 81 (96)
Q Consensus 32 ~w~rP~rl----~r~Lr~Q------Gi~GPp----------y~fl~Gn~~E~~~~~~~a~s~p~~~sHDi 81 (96)
-|++|+-+ ++.++.| |++.|. ..|++-|.+|+..+....++....+.|.+
T Consensus 33 ~WRKPrGiDnrvRrrfKG~~~mp~iGYgS~kktR~l~PsGf~~~lV~NvkeLe~Llm~n~~~aaeIAh~V 102 (134)
T 4a17_X 33 SWRRPRGIDNRVRRRFRGQRRMAKIGFASDAATKHLLPNGFKKFLIRNPADLEILLMNNRTYCGEIAHNI 102 (134)
T ss_dssp SCCCCCCSSCTGGGTCTTSCCCCCSTTSCCTTTTTBCTTSCEEEEECSSHHHHHHHHHTTTEEEEECTTS
T ss_pred CCCCCCCcccchhhcccCccCCCccCcCCChhhcccCCCCCeEEEeCCHHHHHHHhcCCcccEEEEecCc
Confidence 37888755 4555555 554442 24788999998776544444433445554
No 14
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=29.72 E-value=56 Score=21.13 Aligned_cols=35 Identities=20% Similarity=0.522 Sum_probs=26.6
Q ss_pred chHHHHHHHHHcCCCCCCCccccCC-HHHHHHHHHH
Q 037705 35 KPKKLEKFLRKQGFSGNSYKVFHGD-MKELAQTTKE 69 (96)
Q Consensus 35 rP~rl~r~Lr~QGi~GPpy~fl~Gn-~~E~~~~~~~ 69 (96)
.|.++++..++.|...+...++.|. ..++.+....
T Consensus 82 tp~~l~~y~~~~~~~~~~~~~ltg~~~~~~~~~~~~ 117 (170)
T 4hde_A 82 KPENLKAFIQKFTEDTSNWNLLTGYSLEDITKFSKD 117 (170)
T ss_dssp CHHHHHHHHTTTCSCCTTEEEEBCSCHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCCceecCcccHHHHHHHHHh
Confidence 4788889999999999888899995 4555555443
No 15
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=28.49 E-value=7.7 Score=28.94 Aligned_cols=18 Identities=17% Similarity=0.049 Sum_probs=8.7
Q ss_pred HcCCC---CCCCccccCCHHH
Q 037705 45 KQGFS---GNSYKVFHGDMKE 62 (96)
Q Consensus 45 ~QGi~---GPpy~fl~Gn~~E 62 (96)
++|++ ||++-.++||+.+
T Consensus 4 ~~~~~~PPgP~~lPliGnl~~ 24 (494)
T 3swz_A 4 KTGAKYPKSLLSLPLVGSLPF 24 (494)
T ss_dssp --------CCBCCCEEEEESS
T ss_pred CCCCCCCCCCCCCCeEcchHH
Confidence 45554 4444778898744
No 16
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=28.41 E-value=63 Score=25.75 Aligned_cols=27 Identities=15% Similarity=0.337 Sum_probs=19.7
Q ss_pred HHHHHHH-----hchHHHHHHHHHcC--CCCCCC
Q 037705 27 MLLNWVW-----LKPKKLEKFLRKQG--FSGNSY 53 (96)
Q Consensus 27 ~~~~~~w-----~rP~rl~r~Lr~QG--i~GPpy 53 (96)
-++...| ..|+.+.+.||||| |.|=.|
T Consensus 379 i~Fs~fy~~i~g~np~dvA~nLkk~G~~IpGiRp 412 (490)
T 2ww9_A 379 IWFADKWQAISGSSARDVALEFKDQGITLMGRRE 412 (490)
T ss_dssp HHHHHHHHHSCSSCHHHHHHHHHHHHHTSSSCCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHcCCccCCCCC
Confidence 3444556 79999999999999 455444
No 17
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=27.98 E-value=7.9 Score=21.31 Aligned_cols=11 Identities=9% Similarity=0.187 Sum_probs=4.9
Q ss_pred HHHHHHhchHH
Q 037705 28 LLNWVWLKPKK 38 (96)
Q Consensus 28 ~~~~~w~rP~r 38 (96)
+..++++|-++
T Consensus 29 ~~~~~~~RRr~ 39 (44)
T 2ks1_B 29 LGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHhhhhH
Confidence 33444554444
No 18
>1u57_A GAG polyprotein, HIV-1; particle assembly, viral protein; NMR {Human immunodeficiency virus 1}
Probab=27.59 E-value=17 Score=19.73 Aligned_cols=10 Identities=40% Similarity=0.471 Sum_probs=8.2
Q ss_pred HcCCCCCCCc
Q 037705 45 KQGFSGNSYK 54 (96)
Q Consensus 45 ~QGi~GPpy~ 54 (96)
-||+.||.++
T Consensus 8 cqgvggp~hK 17 (48)
T 1u57_A 8 CQGVGGPGHK 17 (48)
T ss_dssp BTTTSBCTTH
T ss_pred ccCCCCCcch
Confidence 4999999775
No 19
>2zkr_x 60S ribosomal protein L31; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=25.49 E-value=34 Score=22.74 Aligned_cols=18 Identities=22% Similarity=0.545 Sum_probs=14.7
Q ss_pred HHHHHHHHcCCCCCCCcc
Q 037705 38 KLEKFLRKQGFSGNSYKV 55 (96)
Q Consensus 38 rl~r~Lr~QGi~GPpy~f 55 (96)
+|-+.+=.+||+.||+++
T Consensus 67 ~LNk~IWskGirnvP~rI 84 (125)
T 2zkr_x 67 RLNKAVWAKGIRNVPYRI 84 (125)
T ss_dssp HHHHHHHTTCSSCCCSEE
T ss_pred HHHHHHHhccCCCCCceE
Confidence 455667799999999986
No 20
>4a17_W RPL31, 60S ribosomal protein L31; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_W 4a1c_W 4a1e_W
Probab=24.70 E-value=37 Score=22.11 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCCCCCCccc
Q 037705 38 KLEKFLRKQGFSGNSYKVF 56 (96)
Q Consensus 38 rl~r~Lr~QGi~GPpy~fl 56 (96)
+|-+..=+.||+.|||++=
T Consensus 53 ~LNk~vWakGirnvP~rIr 71 (111)
T 4a17_W 53 ELNKFIWSNGIRNIPRRVR 71 (111)
T ss_dssp HHHHHHHTTCSSSCCSEEE
T ss_pred HHHHHHHhccccCCCcEEE
Confidence 4566777899999999863
No 21
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.10 E-value=99 Score=17.50 Aligned_cols=8 Identities=25% Similarity=0.675 Sum_probs=5.1
Q ss_pred HHHHHHHH
Q 037705 4 TLWAVAFS 11 (96)
Q Consensus 4 ~~~~~~~~ 11 (96)
+.|.++.+
T Consensus 11 p~wiIi~s 18 (54)
T 2knc_A 11 PIWWVLVG 18 (54)
T ss_dssp CHHHHHHH
T ss_pred chHHHHHH
Confidence 56766665
No 22
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=23.98 E-value=27 Score=25.57 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=13.2
Q ss_pred CCCCCCccccCCHHHH
Q 037705 48 FSGNSYKVFHGDMKEL 63 (96)
Q Consensus 48 i~GPpy~fl~Gn~~E~ 63 (96)
..||++-.++||+.++
T Consensus 12 pPgP~~~PliG~~~~~ 27 (476)
T 3e6i_A 12 PPGPFPLPIIGNLFQL 27 (476)
T ss_dssp CCCCCCBTTTBTGGGC
T ss_pred CcCCCCcccccChhhh
Confidence 6899998999998654
No 23
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=23.94 E-value=1e+02 Score=17.54 Aligned_cols=9 Identities=33% Similarity=0.911 Sum_probs=5.7
Q ss_pred hHHHHHHHH
Q 037705 3 ATLWAVAFS 11 (96)
Q Consensus 3 ~~~~~~~~~ 11 (96)
.+.|.+++|
T Consensus 7 vp~WiIi~s 15 (54)
T 2l8s_A 7 VPLWVILLS 15 (54)
T ss_dssp CCTHHHHHH
T ss_pred CchHHHHHH
Confidence 356776666
No 24
>3dkt_A Maritimacin; enzyme encapsulation, nanocompartment, oxidative stress, FER like protein, HK97-fold, antibiotic; 3.10A {Thermotoga maritima}
Probab=23.25 E-value=21 Score=26.29 Aligned_cols=18 Identities=22% Similarity=0.529 Sum_probs=14.3
Q ss_pred HHHHHcCCCCCCCccccCC
Q 037705 41 KFLRKQGFSGNSYKVFHGD 59 (96)
Q Consensus 41 r~Lr~QGi~GPpy~fl~Gn 59 (96)
..|++.|+.|| |.+++|.
T Consensus 157 ~~L~~~G~~GP-y~Lvlsp 174 (265)
T 3dkt_A 157 SIFSKDGIEGP-YTLVINT 174 (265)
T ss_dssp HHHHTTTCCSS-EEEEEEH
T ss_pred HHHHHcCCCCC-eEEEECH
Confidence 36899999998 8777653
No 25
>3u5e_d L34, YL28, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_M 2ww9_M 3izc_g 3izs_g 2wwb_M 3o5h_a 3o58_a 3u5i_d 4b6a_d 1s1i_W 3jyw_W
Probab=22.99 E-value=41 Score=21.95 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=15.1
Q ss_pred HHHHHHHHcCCCCCCCccc
Q 037705 38 KLEKFLRKQGFSGNSYKVF 56 (96)
Q Consensus 38 rl~r~Lr~QGi~GPpy~fl 56 (96)
+|-+..=..||+.|||++=
T Consensus 54 ~LNk~vWakGirnvP~rIr 72 (113)
T 3u5e_d 54 ELNQAIWKRGVKGVEYRLR 72 (113)
T ss_dssp HHHHHHHTTCTTCCCSEEE
T ss_pred HHHHHHHhccccCCCceEE
Confidence 4556677899999999863
No 26
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A* 1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A* 2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A* 2ij3_A* 2ij4_A* 3hf2_A* ...
Probab=22.87 E-value=30 Score=25.72 Aligned_cols=18 Identities=6% Similarity=-0.162 Sum_probs=14.2
Q ss_pred cCCCCCCCccccCCHHHH
Q 037705 46 QGFSGNSYKVFHGDMKEL 63 (96)
Q Consensus 46 QGi~GPpy~fl~Gn~~E~ 63 (96)
.++.||++-.++||+.++
T Consensus 3 ~~~PGP~~~p~iG~l~~~ 20 (470)
T 2ij2_A 3 KEMPQPKTFGELKNLPLL 20 (470)
T ss_dssp CCCCCCCCCGGGTTGGGG
T ss_pred CCCCCCCCCCccccHHHH
Confidence 368899888889998654
No 27
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=22.26 E-value=29 Score=25.67 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=13.8
Q ss_pred cCCCCCCCccccCCHHHH
Q 037705 46 QGFSGNSYKVFHGDMKEL 63 (96)
Q Consensus 46 QGi~GPpy~fl~Gn~~E~ 63 (96)
..+.||++-.++||+.++
T Consensus 10 ~~pPgP~~~p~iG~~~~~ 27 (476)
T 1po5_A 10 KLPPGPSPLPVLGNLLQM 27 (476)
T ss_dssp CCCCCSCCBTTTBTGGGC
T ss_pred CCCcCCCCCCccccHHhc
Confidence 356899888889997554
No 28
>3j21_a 50S ribosomal protein L31E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.14 E-value=45 Score=21.12 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=14.4
Q ss_pred HHHHHHHHcCCCCCCCcc
Q 037705 38 KLEKFLRKQGFSGNSYKV 55 (96)
Q Consensus 38 rl~r~Lr~QGi~GPpy~f 55 (96)
+|-+..=.+||+.|||++
T Consensus 53 ~LNk~vWakGirnvP~rI 70 (95)
T 3j21_a 53 KVNEKIWERGIEKPPSKL 70 (95)
T ss_dssp HHHHHHHTTCSSCCCSEE
T ss_pred HHHHHHHhccccCCCCeE
Confidence 455667789999999986
No 29
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=22.09 E-value=30 Score=25.56 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=9.4
Q ss_pred cCCCCCCCccccCCHHHH
Q 037705 46 QGFSGNSYKVFHGDMKEL 63 (96)
Q Consensus 46 QGi~GPpy~fl~Gn~~E~ 63 (96)
..+.||++-.++||+.++
T Consensus 11 ~~pPgP~~~p~iG~~~~~ 28 (477)
T 1r9o_A 11 KLPPGPTPLPVIGNILQI 28 (477)
T ss_dssp BCCCCSSSCC-----CCB
T ss_pred CCCCCCCCCceeccHhhc
Confidence 467899888889997543
No 30
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8- benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo sapiens}
Probab=21.33 E-value=29 Score=25.95 Aligned_cols=17 Identities=12% Similarity=-0.130 Sum_probs=13.6
Q ss_pred CCCCCCCccccCCHHHH
Q 037705 47 GFSGNSYKVFHGDMKEL 63 (96)
Q Consensus 47 Gi~GPpy~fl~Gn~~E~ 63 (96)
++.||++-.++||+.++
T Consensus 17 ~~PgP~~~p~~G~~~~~ 33 (495)
T 2hi4_A 17 SPPEPWGWPLLGHVLTL 33 (495)
T ss_dssp CCCCCCCBTTTBTHHHH
T ss_pred CCCCCCCCcceeeHHhc
Confidence 35899888889998765
No 31
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=21.29 E-value=27 Score=21.51 Aligned_cols=13 Identities=8% Similarity=0.084 Sum_probs=9.2
Q ss_pred HcCCCCCCCcccc
Q 037705 45 KQGFSGNSYKVFH 57 (96)
Q Consensus 45 ~QGi~GPpy~fl~ 57 (96)
+||+|||--.+=.
T Consensus 1 RhGyRGp~~~l~~ 13 (106)
T 3d0f_A 1 SNAYRGPEAFLKL 13 (106)
T ss_dssp -CCCCCCSEECCC
T ss_pred CCCCCCccccccc
Confidence 5899999875533
No 32
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=20.36 E-value=50 Score=19.07 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=12.1
Q ss_pred hchHHHHHHHHHcCC
Q 037705 34 LKPKKLEKFLRKQGF 48 (96)
Q Consensus 34 ~rP~rl~r~Lr~QGi 48 (96)
|.|.++.+.++++|+
T Consensus 9 ~~~~ri~~~l~~~gl 23 (74)
T 1neq_A 9 WHRADVIAGLKKRKL 23 (74)
T ss_dssp CCHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHcCC
Confidence 468888888888886
No 33
>3dxe_B Amyloid beta A4 protein; alzheimer'S disease, APP, AICD, Fe65, PTB domain, alternative splicing, polymorphism, alzheimer disease, apoptosis; 2.00A {Homo sapiens} PDB: 3dxc_B 3dxd_B 2roz_A
Probab=20.20 E-value=12 Score=19.71 Aligned_cols=16 Identities=25% Similarity=0.715 Sum_probs=13.7
Q ss_pred HHHHHcCCCCCCCccc
Q 037705 41 KFLRKQGFSGNSYKVF 56 (96)
Q Consensus 41 r~Lr~QGi~GPpy~fl 56 (96)
..|..+|..-|.|+++
T Consensus 15 ~~mQ~~GYENPTYkyf 30 (35)
T 3dxe_B 15 SKMQQNGYENPTYKFF 30 (35)
T ss_dssp HHHHHTCEECHHHHHH
T ss_pred HHHHhccCcCcHHHHH
Confidence 4688999999999976
Done!