Query 037705
Match_columns 96
No_of_seqs 104 out of 393
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 05:28:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037705.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037705hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tqna_ a.104.1.1 (A:) Mammali 76.8 0.55 4E-05 32.6 2.0 22 42-63 5-26 (472)
2 d2odgc1 a.140.1.1 (C:2-47) Inn 32.8 12 0.00085 19.6 1.8 15 37-51 9-24 (46)
3 d1ulza3 d.142.1.2 (A:115-328) 32.6 31 0.0023 21.5 4.4 32 38-69 3-35 (214)
4 d2hgka1 a.29.17.1 (A:1-109) Hy 29.9 28 0.0021 20.9 3.6 18 37-54 12-30 (109)
5 d1rh5a_ f.41.1.1 (A:) Preprote 29.4 38 0.0028 24.3 4.9 18 34-51 339-356 (422)
6 d1t3ba1 c.47.1.9 (A:61-210) Di 28.5 13 0.00092 22.6 1.7 17 42-59 113-129 (150)
7 d1fvka_ c.47.1.13 (A:) Disulfi 23.4 44 0.0032 19.8 3.7 17 42-58 141-157 (188)
8 d1eeja1 c.47.1.9 (A:61-216) Di 22.7 19 0.0014 21.8 1.8 18 41-59 112-129 (156)
9 d2o14a2 c.23.10.8 (A:160-367) 22.5 21 0.0016 21.7 2.0 14 37-50 194-207 (208)
10 d1kp0a1 c.55.2.1 (A:1-156) Cre 21.5 27 0.0019 20.7 2.3 23 37-63 29-51 (156)
11 d2gmfa_ a.26.1.2 (A:) Granuloc 21.0 11 0.00079 23.3 0.3 34 35-69 48-83 (121)
12 d1xzoa1 c.47.1.10 (A:3-174) Th 20.3 40 0.0029 20.3 3.0 35 35-69 81-116 (172)
13 d1q9ua_ d.129.7.1 (A:) Unnamed 20.1 42 0.003 19.4 3.0 30 40-69 38-69 (128)
No 1
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.82 E-value=0.55 Score=32.62 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=18.1
Q ss_pred HHHHcCCCCCCCccccCCHHHH
Q 037705 42 FLRKQGFSGNSYKVFHGDMKEL 63 (96)
Q Consensus 42 ~Lr~QGi~GPpy~fl~Gn~~E~ 63 (96)
.++|-||-||++-.++||+.++
T Consensus 5 ~~~~~~iPGP~~~P~iG~~~~~ 26 (472)
T d1tqna_ 5 LFKKLGIPGPTPLPFLGNILSY 26 (472)
T ss_dssp HHHHTTCCCCCCBTTTBTGGGG
T ss_pred chhhcCCCCCCCcCceeEHHHh
Confidence 4678899999987788998664
No 2
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.76 E-value=12 Score=19.57 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=11.2
Q ss_pred HHHHHHHHHcCC-CCC
Q 037705 37 KKLEKFLRKQGF-SGN 51 (96)
Q Consensus 37 ~rl~r~Lr~QGi-~GP 51 (96)
.-|.+.|++-|| +||
T Consensus 9 ~El~~lL~~y~I~HGP 24 (46)
T d2odgc1 9 TELTTLLRRYNIPHGP 24 (46)
T ss_dssp HHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHhCCCCCC
Confidence 346788999999 464
No 3
>d1ulza3 d.142.1.2 (A:115-328) Biotin carboxylase (BC), domain 2 {Aquifex aeolicus [TaxId: 63363]}
Probab=32.58 E-value=31 Score=21.49 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=24.2
Q ss_pred HHHHHHHHcCCCCCC-CccccCCHHHHHHHHHH
Q 037705 38 KLEKFLRKQGFSGNS-YKVFHGDMKELAQTTKE 69 (96)
Q Consensus 38 rl~r~Lr~QGi~GPp-y~fl~Gn~~E~~~~~~~ 69 (96)
+.++.|++.|+.-+| +..++.|..|..+..++
T Consensus 3 ~~k~~~~~aGvP~~p~~~~~v~s~~ea~~~~~~ 35 (214)
T d1ulza3 3 RSKEVMKKAGVPVVPGSDGVLKSLEEAKALARE 35 (214)
T ss_dssp HHHHHHHHTTCCBCCBCSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCCcCCCCCCHHHHHHHHHH
Confidence 456789999997644 45678999998876554
No 4
>d2hgka1 a.29.17.1 (A:1-109) Hypothetical protein YqcC {Escherichia coli [TaxId: 562]}
Probab=29.91 E-value=28 Score=20.92 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCC-CCCCCc
Q 037705 37 KKLEKFLRKQGF-SGNSYK 54 (96)
Q Consensus 37 ~rl~r~Lr~QGi-~GPpy~ 54 (96)
..||..||++|. ...+|+
T Consensus 12 ~~LE~~Lr~~~lW~~~~Ps 30 (109)
T d2hgka1 12 QALEALLREHQHWRNDEPQ 30 (109)
T ss_dssp HHHHHHHHHTTCCCCCCCC
T ss_pred HHHHHHHHHcCCCCCCCCC
Confidence 468899999998 554444
No 5
>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=29.36 E-value=38 Score=24.34 Aligned_cols=18 Identities=28% Similarity=0.447 Sum_probs=9.5
Q ss_pred hchHHHHHHHHHcCCCCC
Q 037705 34 LKPKKLEKFLRKQGFSGN 51 (96)
Q Consensus 34 ~rP~rl~r~Lr~QGi~GP 51 (96)
..|+.+.+.|+|||..=|
T Consensus 339 ~~p~~iAe~lkk~g~~Ip 356 (422)
T d1rh5a_ 339 LDPKSMAKRIGSLGMAIK 356 (422)
T ss_dssp CSHHHHHHHC--------
T ss_pred CCHHHHHHHHHHcCCcCC
Confidence 689999999999996333
No 6
>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=28.52 E-value=13 Score=22.61 Aligned_cols=17 Identities=12% Similarity=0.188 Sum_probs=11.6
Q ss_pred HHHHcCCCCCCCccccCC
Q 037705 42 FLRKQGFSGNSYKVFHGD 59 (96)
Q Consensus 42 ~Lr~QGi~GPpy~fl~Gn 59 (96)
..++-||+|.|- |+++|
T Consensus 113 la~~lGv~GTPt-~~~~n 129 (150)
T d1t3ba1 113 LGIQFGVRGTPS-IVTST 129 (150)
T ss_dssp HHHHHTCCSSCE-EECTT
T ss_pred HHHhcCcCCCCE-EEEcC
Confidence 456889999884 44433
No 7
>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}
Probab=23.36 E-value=44 Score=19.82 Aligned_cols=17 Identities=12% Similarity=0.098 Sum_probs=11.2
Q ss_pred HHHHcCCCCCCCccccC
Q 037705 42 FLRKQGFSGNSYKVFHG 58 (96)
Q Consensus 42 ~Lr~QGi~GPpy~fl~G 58 (96)
.-++-||.|.|-=++-|
T Consensus 141 ~a~~~gI~gTPt~vInG 157 (188)
T d1fvka_ 141 AAADVQLRGVPAMFVNG 157 (188)
T ss_dssp HHHHTTCCSSSEEEETT
T ss_pred HHHHcCCccccEEEECC
Confidence 34588999988444334
No 8
>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=22.67 E-value=19 Score=21.77 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=12.1
Q ss_pred HHHHHcCCCCCCCccccCC
Q 037705 41 KFLRKQGFSGNSYKVFHGD 59 (96)
Q Consensus 41 r~Lr~QGi~GPpy~fl~Gn 59 (96)
...++-||+|.|- |+++|
T Consensus 112 ~la~~lgv~GTPt-~~~~n 129 (156)
T d1eeja1 112 ALGVQLGVSGTPA-VVLSN 129 (156)
T ss_dssp HHHHHHTCCSSSE-EECTT
T ss_pred HHHHHcCCcCCCE-EEEeC
Confidence 3467789999985 44433
No 9
>d2o14a2 c.23.10.8 (A:160-367) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]}
Probab=22.49 E-value=21 Score=21.65 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=11.4
Q ss_pred HHHHHHHHHcCCCC
Q 037705 37 KKLEKFLRKQGFSG 50 (96)
Q Consensus 37 ~rl~r~Lr~QGi~G 50 (96)
..+.+.||+||+.|
T Consensus 194 ~~i~~~lk~~g~~g 207 (208)
T d2o14a2 194 RLAVQELKRQGIAG 207 (208)
T ss_dssp HHHHHHHHHTTCTT
T ss_pred HHHHHHHHhcccCC
Confidence 45667899999988
No 10
>d1kp0a1 c.55.2.1 (A:1-156) Creatinase {Actinobacillus sp. [TaxId: 41114]}
Probab=21.55 E-value=27 Score=20.66 Aligned_cols=23 Identities=13% Similarity=0.397 Sum_probs=17.2
Q ss_pred HHHHHHHHHcCCCCCCCccccCCHHHH
Q 037705 37 KKLEKFLRKQGFSGNSYKVFHGDMKEL 63 (96)
Q Consensus 37 ~rl~r~Lr~QGi~GPpy~fl~Gn~~E~ 63 (96)
.++++.|+++||.| +++.+...+
T Consensus 29 ~klr~~M~e~~iDa----llit~~~ni 51 (156)
T d1kp0a1 29 BRLRAWMAKSBIDA----VLFTSYHNI 51 (156)
T ss_dssp HHHHHHHHHHTCSE----EEECSHHHH
T ss_pred HHHHHHHHHCCCCE----EEEcCcccC
Confidence 47788999999987 666665554
No 11
>d2gmfa_ a.26.1.2 (A:) Granulocyte-macrophage colony-stimulating factor (GM-CSF) {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.00 E-value=11 Score=23.35 Aligned_cols=34 Identities=32% Similarity=0.485 Sum_probs=18.9
Q ss_pred chHHHHHH--HHHcCCCCCCCccccCCHHHHHHHHHH
Q 037705 35 KPKKLEKF--LRKQGFSGNSYKVFHGDMKELAQTTKE 69 (96)
Q Consensus 35 rP~rl~r~--Lr~QGi~GPpy~fl~Gn~~E~~~~~~~ 69 (96)
+|--++.+ |=+||++|.--+ |-|.+.-|.+-.++
T Consensus 48 ePTClQtRL~LYkqGLrGslt~-L~g~LtmmA~hYk~ 83 (121)
T d2gmfa_ 48 EPTCLQTRLELYKQGLRGSLTK-LKGPLTMMASHYKQ 83 (121)
T ss_dssp SCCSHHHHHHHHHHTCCGGGGG-GHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhhccccHHH-hccHHHHHHHHHHh
Confidence 34445444 559999995443 34555445444443
No 12
>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}
Probab=20.26 E-value=40 Score=20.27 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=26.4
Q ss_pred chHHHHHHHHHcCCCCCCCccccCCH-HHHHHHHHH
Q 037705 35 KPKKLEKFLRKQGFSGNSYKVFHGDM-KELAQTTKE 69 (96)
Q Consensus 35 rP~rl~r~Lr~QGi~GPpy~fl~Gn~-~E~~~~~~~ 69 (96)
.|..+++..+++|+..+..+++.|+. .++.+...+
T Consensus 81 tp~~l~~y~~~~~~~~~~w~~lt~~~~~~~~~~~~~ 116 (172)
T d1xzoa1 81 KPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALK 116 (172)
T ss_dssp CHHHHHHHHTTSCCCGGGEEEEBCSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccccccceeeccchHHHHHHHHHh
Confidence 37889999999999999889999854 445554433
No 13
>d1q9ua_ d.129.7.1 (A:) Unnamed hypothetical protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=20.07 E-value=42 Score=19.38 Aligned_cols=30 Identities=17% Similarity=0.232 Sum_probs=20.9
Q ss_pred HHHHHHcCCCC-CCCccc-cCCHHHHHHHHHH
Q 037705 40 EKFLRKQGFSG-NSYKVF-HGDMKELAQTTKE 69 (96)
Q Consensus 40 ~r~Lr~QGi~G-Ppy~fl-~Gn~~E~~~~~~~ 69 (96)
.+.++++|..- |+++++ +||.+--.++.+.
T Consensus 38 ~~~~~~~g~~~~~~~~i~~~cnp~~a~~~l~~ 69 (128)
T d1q9ua_ 38 TEKLQEKGLDFSTPMVILEVCNPQEAARVLNE 69 (128)
T ss_dssp HHHHHHTTCCCCSCEEEEEEECHHHHHHHHHH
T ss_pred HHHHHhcCCCcCCCeEEEEECCHHHHHHHHHh
Confidence 34566677654 566665 8999888887765
Done!