BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037706
(394 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/309 (25%), Positives = 129/309 (41%), Gaps = 56/309 (18%)
Query: 104 GILTRDTLKVH---GSSPGIIREIPKFCFGCVGSTYRE-----PIGIAGFGRGALSVPSQ 155
G + D + V GSS G + +P+F F C ++ + +G+AG GR +++PSQ
Sbjct: 108 GEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQ 167
Query: 156 LG---FLQKGFSHCF-------LAFKYANDPNISSPLVIGDVAISSKDNLQFTPMLKSPM 205
++ F+ C + NDP P + I S L +TP+L +P+
Sbjct: 168 FASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNI-----IVSDKTLTYTPLLTNPV 222
Query: 206 YPNY----------YYIGLEAITIGNSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPE 255
+ Y+IG+++I I NS + + SL S G GG + + YT L
Sbjct: 223 STSATSTQGEPSVEYFIGVKSIKI-NSKIVALNTSLLSISSAGLGGTKISTINPYTVLET 281
Query: 256 PFYSQLLS--ILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFPSITFHFLNNV 313
Y + I +S R V F C+ +N + L PS+ ++
Sbjct: 282 SIYKAVTEAFIKESAARNITRVASVAP---FGACFST---DNILSTRLGPSVP-----SI 330
Query: 314 SLVLPQGNHFYAMSAPSNSSA-----VKCLLFQSMDDG-DYGPSGVFGSFQQQNVEVVYD 367
LVL + + ++ SNS V CL +D G + S V G Q ++ V +D
Sbjct: 331 DLVLQSESVVWTITG-SNSMVYINDNVVCL--GVVDGGSNLRTSIVIGGHQLEDNLVQFD 387
Query: 368 LEKERIGFQ 376
L R+GF
Sbjct: 388 LATSRVGFS 396
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 80/308 (25%), Positives = 129/308 (41%), Gaps = 56/308 (18%)
Query: 104 GILTRDTLKVH---GSSPGIIREIPKFCFGCVGSTYRE-----PIGIAGFGRGALSVPSQ 155
G + D + V GSS G + +P+F F C ++ + +G+AG GR +++PSQ
Sbjct: 108 GEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNLASGVVGMAGLGRTRIALPSQ 167
Query: 156 LG---FLQKGFSHCF-------LAFKYANDPNISSPLVIGDVAISSKDNLQFTPMLKSPM 205
++ F+ C + NDP P + I S L +TP+L +P+
Sbjct: 168 FASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNI-----IVSDKTLTYTPLLTNPV 222
Query: 206 YPNY----------YYIGLEAITIGNSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPE 255
+ Y+IG+++I I NS + + SL S G GG + + YT L
Sbjct: 223 STSATSTQGEPSVEYFIGVKSIKI-NSKIVALNTSLLSISSAGLGGTKISTINPYTVLET 281
Query: 256 PFYSQLLS--ILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFPSITFHFLNNV 313
Y + I +S R V F C+ +N + L PS+ ++
Sbjct: 282 SIYKAVTEAFIKESAARNITRVASVAP---FGACFST---DNILSTRLGPSVP-----SI 330
Query: 314 SLVLPQGNHFYAMSAPSNSSA-----VKCLLFQSMDDG-DYGPSGVFGSFQQQNVEVVYD 367
LVL + + ++ SNS V CL +D G + S V G Q ++ V +D
Sbjct: 331 DLVLQSESVVWTITG-SNSMVYINDNVVCL--GVVDGGSNLRTSIVIGGHQLEDNLVQFD 387
Query: 368 LEKERIGF 375
L R+GF
Sbjct: 388 LATSRVGF 395
>pdb|3HD8|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
pdb|3HD8|C Chain C, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-Iia In Complex With Bacillus Subtilis Xylanase
Length = 389
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/260 (25%), Positives = 111/260 (42%), Gaps = 36/260 (13%)
Query: 132 VGSTYREPIGIAGFGRGALSVPSQLGFLQKGFSHCFLAFKYANDPNISSPLVIGDVAISS 191
+ S R G+AG L++PSQ+ QK + FL P ++ + G +
Sbjct: 132 LASLPRGSTGVAGLAGSGLALPSQVASAQK-VPNKFLLCLPTGGPGVA---IFGGGPLPW 187
Query: 192 ---KDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFDSQGNGGLLVDSGT 248
++ +TP++ P +YI +I + N T VP+S R GG+++ +
Sbjct: 188 PQFTQSMDYTPLVAKGGSP-AHYISARSIKVEN---TRVPISERAL---ATGGVMLSTRL 240
Query: 249 TYTHLPEPFYSQLLSILQSTITYYPR-----AKEVEERTGFDLCYRVPCPNNTFTDDLFP 303
Y L Y L+ + P A+ V+ F+LCY T L
Sbjct: 241 PYVLLRRDVYRPLVDAFTKALAAQPANGAPVARAVKPVAPFELCYD--------TKTLGN 292
Query: 304 SITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVK----CLLFQSMDDGDYG----PSGVFG 355
+ +++ NV L L G +AM+ ++ VK C+ F M D G P+ + G
Sbjct: 293 NPGGYWVPNVLLEL-DGGSDWAMTGKNSMVDVKPGTACVAFVEMKGVDAGDGSAPAVILG 351
Query: 356 SFQQQNVEVVYDLEKERIGF 375
Q ++ + +D+EK+R+GF
Sbjct: 352 GAQMEDFVLDFDMEKKRLGF 371
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 114/297 (38%), Gaps = 48/297 (16%)
Query: 104 GILTRDTLKVHGSSP-----GIIREIPKFCFGCVGSTY------REPIGIAGFGRGALSV 152
G L D L +H + G + +P+F F C S R G+AG G +S+
Sbjct: 109 GELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISL 168
Query: 153 PSQLGF---LQKGFSHCFLAFKYANDPNISSPLVIGDVAISSKD--------NLQFTPML 201
P+QL LQ+ F+ C + P ++ GD + + +L FTP+
Sbjct: 169 PNQLASHFGLQRQFTTCLSRY-----PTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLT 223
Query: 202 KSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQL 261
+ Y + + +I I S+ + +GG ++ + T + L + Y
Sbjct: 224 IT--LQGEYNVRVNSIRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAF 281
Query: 262 LSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFPSITFHFLN-NVSLVLPQG 320
+ + P+ +V+ F LC+ N+ + +PS+ N + G
Sbjct: 282 TQVFAQQL---PKQAQVKSVAPFGLCF------NSNKINAYPSVDLVMDKPNGPVWRISG 332
Query: 321 NHFYAMSAPSNSSAVKCLLFQSMDDGDYGPSG--VFGSFQQQNVEVVYDLEKERIGF 375
+ P V CL + +G P G+ Q + VV+DL + R+GF
Sbjct: 333 EDLMVQAQP----GVTCL---GVMNGGMQPRAEITLGARQLEENLVVFDLARSRVGF 382
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/343 (22%), Positives = 135/343 (39%), Gaps = 58/343 (16%)
Query: 69 PCTMSGCSLSTLLKSTCC-----------RPCPSFAYTYGEGGLVTGILTRDTLKVH--- 114
PC+ C L+ + C +PC ++ Y G G L+ +
Sbjct: 49 PCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTD 108
Query: 115 GSSP------GIIREIPKFCFGCVGSTYREPIGIAGFGRGALSVPSQLGFLQKGFSHCFL 168
GS P G++ + S R G+AG L++P+Q+ QK ++ FL
Sbjct: 109 GSKPVSKVNVGVLAACAPSKL--LASLPRGSTGVAGLANSGLALPAQVASAQK-VANRFL 165
Query: 169 AFKYANDPNISSPLVIGDVAISS---KDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLT 225
P ++ + G + ++ +TP++ P +Y I +I +G+ T
Sbjct: 166 LCLPTGGPGVA---IFGGGPVPWPQFTQSMPYTPLVTKGGSPAHY-ISARSIVVGD---T 218
Query: 226 EVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITY-----YPRAKEVEE 280
VP+ + GG+++ + Y L Y L+ + P A+ VE
Sbjct: 219 RVPVPEGALAT---GGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVEA 275
Query: 281 RTGFDLCYRVPCPNNTFTDDLFPSITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVK---- 336
F +CY T L ++ + + NV L L G + M+ ++ VK
Sbjct: 276 VAPFGVCYD--------TKTLGNNLGGYAVPNVQLGL-DGGSDWTMTGKNSMVDVKQGTA 326
Query: 337 CLLFQSMDD---GD-YGPSGVFGSFQQQNVEVVYDLEKERIGF 375
C+ F M GD P+ + G Q ++ + +D+EK+R+GF
Sbjct: 327 CVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGF 369
>pdb|2EWY|A Chain A, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|B Chain B, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|C Chain C, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
pdb|2EWY|D Chain D, Crystal Structure Of Human Bace2 In Complex With A
Hydroxyethylenamine Transition-State Inhibitor
Length = 383
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/214 (25%), Positives = 92/214 (42%), Gaps = 32/214 (14%)
Query: 182 LVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFDSQGNG 240
LV+G + S K ++ +TP+ + YY I + + IG SL L RE+++
Sbjct: 172 LVLGGIEPSLYKGDIWYTPIKEE----WYYQIEILKLEIGGQSLN---LDCREYNADK-- 222
Query: 241 GLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERT-GFDLCYRVPCPNNTFTD 299
+VDSGTT LP+ + + + RA + E + GF ++ C N+ T
Sbjct: 223 -AIVDSGTTLLRLPQ-------KVFDAVVEAVARASLIPEFSDGFWTGSQLACWTNSETP 274
Query: 300 -DLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDGDYGPSG 352
FP I+ + + S +LPQ M A N + + S + +
Sbjct: 275 WSYFPKISIYLRDENSSRSFRITILPQLYIQPMMGAGLNYECYRFGISPSTN------AL 328
Query: 353 VFGSFQQQNVEVVYDLEKERIGFQPMDCASTASA 386
V G+ + V++D ++R+GF CA A A
Sbjct: 329 VIGATVMEGFYVIFDRAQKRVGFAASPCAEIAGA 362
>pdb|2B42|A Chain A, Crystal Structure Of The Triticum Xylanse Inhibitor-I In
Complex With Bacillus Subtilis Xylanase
Length = 381
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/343 (21%), Positives = 134/343 (39%), Gaps = 58/343 (16%)
Query: 69 PCTMSGCSLSTLLKSTCC-----------RPCPSFAYTYGEGGLVTGILTRDTLKVH--- 114
PC+ C L+ + C +PC ++ Y G G L+ +
Sbjct: 49 PCSSPTCLLANAYPAPGCPAPSCGSDKHDKPCTAYPYNPVSGACAAGSLSHTRFVANTTD 108
Query: 115 GSSP------GIIREIPKFCFGCVGSTYREPIGIAGFGRGALSVPSQLGFLQKGFSHCFL 168
GS P G++ + S R G+AG L++P+Q+ QK ++ FL
Sbjct: 109 GSKPVSKVNVGVLAACAPSKL--LASLPRGSTGVAGLANSGLALPAQVASAQK-VANRFL 165
Query: 169 AFKYANDPNISSPLVIGDVAISS---KDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLT 225
P ++ + G + ++ +TP++ P +Y I +I +G+ T
Sbjct: 166 LCLPTGGPGVA---IFGGGPVPWPQFTQSMPYTPLVTKGGSPAHY-ISARSIVVGD---T 218
Query: 226 EVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYY-----PRAKEVEE 280
VP+ + GG+++ + Y L Y L+ + P A+ V
Sbjct: 219 RVPVPEGALAT---GGVMLSTRLPYVLLRPDVYRPLMDAFTKALAAQHANGAPVARAVVA 275
Query: 281 RTGFDLCYRVPCPNNTFTDDLFPSITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVK---- 336
F +CY T L ++ + + NV L L G + M+ ++ VK
Sbjct: 276 VAPFGVCYD--------TKTLGNNLGGYAVPNVQLGL-DGGSDWTMTGKNSMVDVKQGTA 326
Query: 337 CLLFQSMDD---GD-YGPSGVFGSFQQQNVEVVYDLEKERIGF 375
C+ F M GD P+ + G Q ++ + +D+EK+R+GF
Sbjct: 327 CVAFVEMKGVAAGDGRAPAVILGGAQMEDFVLDFDMEKKRLGF 369
>pdb|1EAG|A Chain A, Secreted Aspartic Proteinase (Sap2) From Candida Albicans
Complexed With A70450
pdb|3PVK|A Chain A, Secreted Aspartic Protease 2 In Complex With Benzamidine
pdb|3Q70|A Chain A, Secreted Aspartic Protease In Complex With Ritonavir
Length = 342
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 79/398 (19%), Positives = 140/398 (35%), Gaps = 93/398 (23%)
Query: 2 IQVYMDTGSDLTWVPCGNLSFDCMDCDDYRNNKLMXXXXXXXXXXXXXXXXXXXFCLNIH 61
+ V +DTGS WVP +++ DC FC
Sbjct: 27 LNVIVDTGSSDLWVP--DVNVDCQ---------------------VTYSDQTADFC---- 59
Query: 62 SSDNPFDPCTMSGCSLSTLLKSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSS--PG 119
+DP SG S S L + F YG+G G L +DT+ G S
Sbjct: 60 KQKGTYDP---SGSSASQDLNT-------PFKIGYGDGSSSQGTLYKDTVGFGGVSIKNQ 109
Query: 120 IIREIPKFCF--GCVGSTYREPIGIAGFGRGALSVPSQLGFLQKGFSHCFLAFKYANDPN 177
++ ++ G +G Y+ + +++ Q + +S Y N P+
Sbjct: 110 VLADVDSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSL------YLNSPD 163
Query: 178 ISSPLVIGDVAISSKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFDSQ 237
++ G + DN +++ L I + +S E+ +SL +
Sbjct: 164 AAT----GQIIFGGVDNAKYSGSL---------------IALPVTSDRELRISLGSVEVS 204
Query: 238 G------NGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVP 291
G N +L+DSGTT T+L + Q++ +T + + + Y V
Sbjct: 205 GKTINTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLT---------QDSNGNSFYEVD 255
Query: 292 CPNNTFTDDLFPSITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDGDYGPS 351
C +L + F+F N + +P ++ KC L ++D +
Sbjct: 256 C-------NLSGDVVFNFSKNAKISVPASEFAASLQGDDGQPYDKCQLLFDVNDAN---- 304
Query: 352 GVFGSFQQQNVEVVYDLEKERIGFQPMDCASTASAQGL 389
+ G ++ +VYDL+ I + S +S L
Sbjct: 305 -ILGDNFLRSAYIVYDLDDNEISLAQVKYTSASSISAL 341
>pdb|1ZAP|A Chain A, Secreted Aspartic Protease From C. Albicans
Length = 342
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 81/399 (20%), Positives = 141/399 (35%), Gaps = 95/399 (23%)
Query: 2 IQVYMDTGSDLTWVPCGNLSFDCMDCDDYRNNKLMXXXXXXXXXXXXXXXXXXXFCLNIH 61
+ V +DTGS WVP +++ DC FC
Sbjct: 27 LNVIVDTGSSDLWVP--DVNIDCQ---------------------VTYSDQTADFC---- 59
Query: 62 SSDNPFDPCTMSGCSLSTLLKSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSS--PG 119
+DP SG S S L + F+ YG+G G L +DT+ G S
Sbjct: 60 KQKGTYDP---SGSSASQDLNT-------PFSIGYGDGSSSQGTLYKDTVGFGGVSIKNQ 109
Query: 120 IIREIPKFCF--GCVGSTYREPIGIAGFGRGALSVPSQLGFLQKGFSHCFLAFKYANDPN 177
++ ++ G +G Y+ + +++ Q + +S Y N P+
Sbjct: 110 VLADVDSTSIDQGILGVGYKTNEAGGSYDNVPVTLKKQGVIAKNAYSL------YLNSPD 163
Query: 178 ISSPLVIGDVAISSKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFDSQ 237
++ G + DN +++ L I + +S E+ +SL +
Sbjct: 164 SAT----GQIIFGGVDNAKYSGSL---------------IALPVTSDRELRISLGSVEVS 204
Query: 238 G------NGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVP 291
G N +L+DSGTT T+L + Q++ +T + + + Y V
Sbjct: 205 GKTINTDNVDVLLDSGTTITYLQQDLADQIIKAFNGKLT---------QDSNGNSFYEVD 255
Query: 292 CPNNTFTDDLFPSITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKC-LLFQSMDDGDYGP 350
C +L + F+F N + +P + + KC LLF D
Sbjct: 256 C-------NLSGDVVFNFSKNAKISVPASDFAASTQGDDGQPYDKCQLLF------DVNK 302
Query: 351 SGVFGSFQQQNVEVVYDLEKERIGFQPMDCASTASAQGL 389
+ + G ++ +VYDL+ I + S +S L
Sbjct: 303 ANILGDNFLRSAYIVYDLDDNEISIAQVKYTSASSTSAL 341
>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
Length = 341
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/307 (19%), Positives = 115/307 (37%), Gaps = 55/307 (17%)
Query: 92 FAYTYGEGGLVTGILTRDTLKVHGSS--PGIIREIPKFCF--GCVGSTYREPIGIAGFGR 147
F YG+G G L +DT+ G+S + +I K G +G Y+ +
Sbjct: 80 FYIGYGDGSSSQGTLYKDTVGFGGASITKQVFADITKTSIPQGILGIGYKTNEAAGDYDN 139
Query: 148 GALSVPSQLGFLQKGFSHCFLAFKYANDPNISSPLVIGDVAISSKDNLQFTPMLKSPMYP 207
+++ +Q + +S Y N PN ++ G + D +++ L
Sbjct: 140 VPVTLKNQGVIAKNAYSL------YLNSPNAAT----GQIIFGGVDKAKYSGSL------ 183
Query: 208 NYYYIGLEAITIGNSSLTEVPLSLREFDS-----QGNGGLLVDSGTTYTHLPEPFYSQLL 262
I + +S E+ ++L + GN +L+DSGTT T+L + ++
Sbjct: 184 ---------IAVPVTSDRELRITLNSLKAVGKNINGNIDVLLDSGTTITYLQQDVAQDII 234
Query: 263 SILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFPSITFHFLNNVSLVLPQGNH 322
Q+ E++ Y C + D F+F NN + +P
Sbjct: 235 DAFQA---------ELKSDGQGHTFYVTDCQTSGTVD-------FNFDNNAKISVPASEF 278
Query: 323 FYAMSAPSNSSAVKCLLFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCAS 382
+S + KC L + D + + G ++ +VYDL+ ++I + S
Sbjct: 279 TAPLSYANGQPYPKCQLLLGISDAN-----ILGDNFLRSAYLVYDLDDDKISLAQVKYTS 333
Query: 383 TASAQGL 389
++ L
Sbjct: 334 ASNIAAL 340
>pdb|2H6S|A Chain A, Secreted Aspartic Proteinase (sap) 3 From Candida Albicans
pdb|2H6T|A Chain A, Secreted Aspartic Proteinase (Sap) 3 From Candida Albicans
Complexed With Pepstatin A
Length = 340
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 71/311 (22%), Positives = 114/311 (36%), Gaps = 63/311 (20%)
Query: 92 FAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTYREPIGIAGFGRGAL- 150
F+ YG+G G +DT+ G S I K F V ST + GI G G
Sbjct: 79 FSIEYGDGTTSQGTWYKDTIGFGGIS------ITKQQFADVTSTSVDQ-GILGIGYKTHE 131
Query: 151 ------SVPSQL---GFLQKGFSHCFLAFKYANDPNISSPLVIGDVAISSKDNLQFTPML 201
+VP L G + K +L + A S ++ G V DN +++ L
Sbjct: 132 AEGNYDNVPVTLKNQGIISKNAYSLYLNSRQAT----SGQIIFGGV-----DNAKYSGTL 182
Query: 202 KS-PMYP-NYYYIGLEAITIGNSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYS 259
+ P+ N I L + + S+ + +L+DSGTT T+L +
Sbjct: 183 IALPVTSDNELRIHLNTVKVAGQSIN------------ADVDVLLDSGTTITYLQQGVAD 230
Query: 260 QLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFPSITFHFLNNVSLVLPQ 319
Q++S TY +L Y V C +L S+ F F N + +P
Sbjct: 231 QVISAFNGQETYDANG---------NLFYLVDC-------NLSGSVDFAFDKNAKISVPA 274
Query: 320 GNHFYAMSAPSNSSAVKC-LLFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERIGFQPM 378
+ +C LLF + D + G ++ +VYDL+ I +
Sbjct: 275 SEFTAPLYTEDGQVYDQCQLLFGTSD------YNILGDNFLRSAYIVYDLDDNEISLAQV 328
Query: 379 DCASTASAQGL 389
+ ++ L
Sbjct: 329 KYTTASNIAAL 339
>pdb|3FV3|A Chain A, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|B Chain B, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|C Chain C, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|D Chain D, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|E Chain E, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|F Chain F, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|G Chain G, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3FV3|H Chain H, Secreted Aspartic Protease 1 From Candida Parapsilosis In
Complex With Pepstatin A
pdb|3TNE|A Chain A, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
pdb|3TNE|B Chain B, The Crystal Structure Of Protease Sapp1p From Candida
Parapsilosis In Complex With The Hiv Protease Inhibitor
Ritonavir
Length = 339
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 97/244 (39%), Gaps = 39/244 (15%)
Query: 90 PSFAYTYGEGGLVTGILTRDTLKVHGSS--PGIIREIPKFCF--GCVGSTYREPIGIAGF 145
+F YG+G G +DT+ ++G S I ++ + G +G Y +
Sbjct: 72 AAFTIRYGDGSTSQGTWGKDTVTINGVSITGQQIADVTQTSVDQGILGIGYTSNEAVYDT 131
Query: 146 -GRGAL----SVPSQLGFLQKGFSHCFLAFKYANDPNISSPLVIGDVAISSKDNLQFTPM 200
GR +VP L K ++ + Y N P+ + +I DN +++
Sbjct: 132 SGRQTTPNYDNVPVTLKKQGKIRTNAYSL--YLNSPSAETGTII----FGGVDNAKYSGK 185
Query: 201 LKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQ 260
L + + +A+TI SL V L F S G+G LL DSGTT T+ P F +Q
Sbjct: 186 LVAEQVTSS-----QALTI---SLASVNLKGSSF-SFGDGALL-DSGTTLTYFPSDFAAQ 235
Query: 261 LLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFPSITFHFLNNVSLVLPQG 320
L + + R + Y + C NT D + F+F N + +P
Sbjct: 236 LADKAGARLVQVARDQ---------YLYFIDC--NT---DTSGTTVFNFGNGAKITVPNT 281
Query: 321 NHFY 324
+ Y
Sbjct: 282 EYVY 285
>pdb|2QZX|A Chain A, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
pdb|2QZX|B Chain B, Secreted Aspartic Proteinase (Sap) 5 From Candida Albicans
Length = 342
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 64/305 (20%), Positives = 115/305 (37%), Gaps = 64/305 (20%)
Query: 92 FAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGST-YREPIGIAGFGRGA- 149
F YG+G G L +DT+ + G S + F V ST R+ I GF G
Sbjct: 80 FDIKYGDGSYAKGKLYKDTVGIGGVS------VRDQLFANVWSTSARKGILGIGFQSGEA 133
Query: 150 ---------LSVPSQLGFLQKGFSHCFLAFKYANDPNISSPLVIGDVAISSKDNLQFT-P 199
+S+ +Q G + K +L S+ G + D +++
Sbjct: 134 TEFDYDNLPISLRNQ-GIIGKAAYSLYLN---------SAEASTGQIIFGGIDKAKYSGS 183
Query: 200 MLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYS 259
++ P+ + +T+G L V + R D+ N +L+DSGTT ++
Sbjct: 184 LVDLPITSE------KKLTVG---LRSVNVRGRNVDANTN--VLLDSGTTISYFTRSIVR 232
Query: 260 QLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFPSITFHFLNNVSLVLPQ 319
+L + + + + +V Y C + +I F F NN+ + +P
Sbjct: 233 NILYAIGAQMKFDSAGNKV---------YVADCKTS-------GTIDFQFGNNLKISVPV 276
Query: 320 GNHFYAMSAPSNSSAVKC--LLFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERIGFQP 377
+ S KC + +S D+ + G ++ VVY+L+ ++I P
Sbjct: 277 SEFLFQTYYTSGKPFPKCEVRIRESEDN-------ILGDNFLRSAYVVYNLDDKKISMAP 329
Query: 378 MDCAS 382
+ S
Sbjct: 330 VKYTS 334
>pdb|2HIZ|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|B Chain B, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2HIZ|C Chain C, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor
pdb|2P83|A Chain A, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|B Chain B, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
pdb|2P83|C Chain C, Potent And Selective Isophthalamide S2 Hydroxyethylamine
Inhibitor Of Bace1
Length = 455
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 33/214 (15%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 232 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 284
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 285 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 333
Query: 294 NNTFTD-DLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 334 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 390
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDC 380
G V G+ + VV+D ++RIGF C
Sbjct: 391 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSAC 422
>pdb|2ZJK|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|B Chain B, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
pdb|2ZJK|C Chain C, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid(3-Mercapto-Propyl)-Amide
Length = 405
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 189 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 241
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 242 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 290
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 291 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 347
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 348 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 392
>pdb|2VA5|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8c
pdb|2VA6|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 24
pdb|2VA7|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 27
Length = 455
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 33/214 (15%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 232 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 284
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 285 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 333
Query: 294 NNTFTD-DLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 334 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 390
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDC 380
G V G+ + VV+D ++RIGF C
Sbjct: 391 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSAC 422
>pdb|3LPI|A Chain A, Structure Of Bace Bound To Sch745132
pdb|3LPI|B Chain B, Structure Of Bace Bound To Sch745132
pdb|3LPJ|A Chain A, Structure Of Bace Bound To Sch743641
pdb|3LPJ|B Chain B, Structure Of Bace Bound To Sch743641
pdb|3LPK|A Chain A, Structure Of Bace Bound To Sch747123
pdb|3LPK|B Chain B, Structure Of Bace Bound To Sch747123
pdb|3OHF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-655295 Aka N~3~-((1s,2r)-1-
Benzyl-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~,
N~1~-Dibutyl-1h-Indole-1,3- Dicarboxamide
pdb|3OHH|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3OHH|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-681889 Aka
N~1~-Butyl-5-Cyano- N~3~-((1s,2r)-1-(3,5-
Difluorobenzyl)-2-Hydroxy-3-((3-
Methoxybenzyl)amino)propyl)-N~1~- Methyl-1h-Indole-1,3-
Dicarboxamide
pdb|3R2F|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3R2F|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With Bms-693391 Aka
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-((1s,2r)-1-(3,
5-Difluorobenzyl)-2-Hydroxy-2-((2r,4r)-
4-Propoxy-2-Pyrrolidinyl)ethyl)-4-Phenylbutanamide
pdb|3SKF|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKF|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3s)-3-(Acetylamino)-3-(Butan-2-Yl)-2-
Oxopyrrolidin-1-
Yl)-N-((2s,
3r)-3-Hydroxy-4-((3-Methoxybenzyl)amino)-1-Phenylbutan-
2- Yl)-4-Phenylbutanamide
pdb|3SKG|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|3SKG|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With
(2s)-2-((3r)-3-Acetamido-3-Isobutyl-2-Oxo-1-
Pyrrolidinyl)-N-
((1s,2r)-1-(3,5-Difluorobenzyl)-2-Hydroxy-2-(1,2,3,
4-Tetrahydro-3- Isoquinolinyl)ethyl)-4-Phenylbutanamide
pdb|4FSE|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
pdb|4FSE|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Wt) Complex With N-(N-(4-Amino-3,5-
Dichlorobenzyl)carbamimidoyl)-3-(4- Methoxyphenyl)-5-
Methyl-4-Isothiazolecarboxamide
Length = 455
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 90/214 (42%), Gaps = 33/214 (15%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 231 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 283
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 284 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 332
Query: 294 NNTFTD-DLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 333 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 389
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDC 380
G V G+ + VV+D ++RIGF C
Sbjct: 390 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSAC 421
>pdb|2QK5|A Chain A, Structure Of Bace1 Bound To Sch626485
pdb|2QK5|B Chain B, Structure Of Bace1 Bound To Sch626485
pdb|2QMD|A Chain A, Structure Of Bace Bound To Sch722924
pdb|2QMD|B Chain B, Structure Of Bace Bound To Sch722924
pdb|2QMF|A Chain A, Structure Of Bace Bound To Sch735310
pdb|2QMF|B Chain B, Structure Of Bace Bound To Sch735310
pdb|2QP8|A Chain A, Structure Of Bace Bound To Sch734723
pdb|2QP8|B Chain B, Structure Of Bace Bound To Sch734723
pdb|2QMG|A Chain A, Structure Of Bace Bound To Sch745966
pdb|2QMG|B Chain B, Structure Of Bace Bound To Sch745966
Length = 395
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 178 SVGGSMIIGGIDHSLYTGSLWYTPIRREW----YYEVIIVRVEINGQDLK---MDCKEYN 230
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 231 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 279
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 280 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 336
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 337 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 381
>pdb|3BRA|A Chain A, Bace-1 Complexed With Compound 1
pdb|3BUF|A Chain A, Bace-1 Complexed With Compound 2
pdb|3BUG|A Chain A, Bace-1 Complexed With Compound 3
pdb|3BUH|A Chain A, Bace-1 Complexed With Compound 4
Length = 409
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 185 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 237
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + ++ ++ S+ +P GF L ++ C
Sbjct: 238 YDKS---IVDSGTTNLRLPKKVFEAAVASIKAASSTEKFP--------DGFWLGEQLVCW 286
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 287 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 343
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 344 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 388
>pdb|1FKN|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1FKN|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|1M4H|A Chain A, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
pdb|1M4H|B Chain B, Crystal Structure Of Beta-Secretase Complexed With
Inhibitor Om00-3
Length = 391
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 175 SVGGSMIIGGIDHSLYTGSLWYTPIRREW----YYEVIIVRVEINGQDLK---MDCKEYN 227
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 228 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 276
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 277 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 333
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 334 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 378
>pdb|3KMX|A Chain A, Structure Of Bace Bound To Sch346572
pdb|3KMX|B Chain B, Structure Of Bace Bound To Sch346572
pdb|3KMY|A Chain A, Structure Of Bace Bound To Sch12472
pdb|3KMY|B Chain B, Structure Of Bace Bound To Sch12472
pdb|3KN0|A Chain A, Structure Of Bace Bound To Sch708236
pdb|3KN0|B Chain B, Structure Of Bace Bound To Sch708236
pdb|3LNK|A Chain A, Structure Of Bace Bound To Sch743813
pdb|3LNK|B Chain B, Structure Of Bace Bound To Sch743813
pdb|4FRS|A Chain A, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
pdb|4FRS|B Chain B, Structure Of Bace In Complex With
(S)-4-(3-Chloro-5-(5-(Prop-1-Yn-1-
Yl)pyridin-3-Yl)thiophen-2-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin- 2(1h)-Iminium
Length = 395
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 178 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 230
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 231 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 279
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 280 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 336
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 337 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 381
>pdb|4DPF|A Chain A, Bace-1 In Complex With A Hea-Macrocyclic Type Inhibitor
pdb|4DPI|A Chain A, Bace-1 In Complex With Hea-Macrocyclic Inhibitor, Mv078512
Length = 391
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 175 SVGGSMIIGGIDHSLYTGSLWYTPIRREW----YYEVIIVRVEINGQDLK---MDCKEYN 227
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 228 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 276
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 277 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 333
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 334 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 378
>pdb|2OF0|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 5
pdb|2OHK|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
1- Amino-Isoquinoline
pdb|2OHL|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
2- Aminoquinoline
pdb|2OHM|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
N~3~-Benzylpyridine-2,3-Diamine
pdb|2OHN|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
4- (4-Fluorobenzyl)piperidine
pdb|2OHQ|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 4
pdb|2OHR|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6a
pdb|2OHS|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 6b
pdb|2OHT|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 7
pdb|2OHU|A Chain A, X-Ray Crystal Structure Of Beta Secretase Complexed With
Compound 8b
pdb|2OHP|A Chain A, X-ray Crystal Structure Of Beta Secretase Complexed With
Compound 3
Length = 402
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 186 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 238
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 239 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 287
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 288 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 344
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 345 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 389
>pdb|3DM6|A Chain A, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|B Chain B, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3DM6|C Chain C, Beta-Secretase 1 Complexed With Statine-Based Inhibitor
pdb|3I25|A Chain A, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|B Chain B, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
pdb|3I25|C Chain C, Potent Beta-Secretase 1 Hydroxyethylene Inhibitor
Length = 406
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 190 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 242
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 243 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 291
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 292 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 348
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 349 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 393
>pdb|2QZL|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Ixs
Length = 411
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 195 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 247
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 248 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 296
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 297 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 353
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 354 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 398
>pdb|1TQF|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8L|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2B8V|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
L- L000430,469
pdb|2IRZ|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2IS0|A Chain A, Crystal Structure Of Human Beta-Secretase Complexed With
Inhibitor
pdb|2PH6|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2OAH|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2P8H|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2NTR|A Chain A, Crystal Structure Of Human Bace-1 Bound To Inhibitor
pdb|2PH8|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Inhibitor
pdb|2QZK|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
I21
pdb|2ZJM|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(4-Sulfamoyl-Phenoxy)-Acetamide
pdb|3FKT|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Spiropiperdine Iminohydantoin Inhibitor
Length = 405
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 189 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 241
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 242 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 290
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 291 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 347
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 348 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 392
>pdb|3CIB|A Chain A, Structure Of Bace Bound To Sch727596
pdb|3CIB|B Chain B, Structure Of Bace Bound To Sch727596
pdb|3CIC|A Chain A, Structure Of Bace Bound To Sch709583
pdb|3CIC|B Chain B, Structure Of Bace Bound To Sch709583
pdb|3CID|A Chain A, Structure Of Bace Bound To Sch726222
pdb|3CID|B Chain B, Structure Of Bace Bound To Sch726222
pdb|4FS4|A Chain A, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
pdb|4FS4|B Chain B, Structure Of Bace Bound To
(S)-4-(3'-Methoxy-[1,1'-Biphenyl]-3-Yl)-1,
4-Dimethyl-6-Oxotetrahydropyrimidin-2(1h)-Iminium
Length = 390
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 173 SVGGSMIIGGIDHSLYTGSLWYTPIRREW----YYEVIIVRVEINGQDLK---MDCKEYN 225
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 226 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 274
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 275 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 331
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 332 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 376
>pdb|2Q11|A Chain A, Structure Of Bace Complexed To Compound 1
pdb|2Q11|B Chain B, Structure Of Bace Complexed To Compound 1
pdb|2Q11|C Chain C, Structure Of Bace Complexed To Compound 1
Length = 388
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 172 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 224
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 225 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 273
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 274 QAGTTPWNIFPVISLYLMGEVTQQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 330
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 331 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 375
>pdb|1YM2|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|1YM2|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Aur200
pdb|2F3E|A Chain A, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|B Chain B, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3E|C Chain C, Crystal Structure Of The Bace Complex With Axq093, A
Macrocyclic Inhibitor
pdb|2F3F|A Chain A, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|B Chain B, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|2F3F|C Chain C, Crystal Structure Of The Bace Complex With Bdf488, A
Macrocyclic Inhibitor
pdb|3DUY|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DUY|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Afj144
pdb|3DV1|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV1|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Arv999
pdb|3DV5|A Chain A, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|B Chain B, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3DV5|C Chain C, Crystal Structure Of Human Beta-Secretase In Complex With
Nvp-Bav544
pdb|3K5C|A Chain A, Human Bace-1 Complex With Nb-216
pdb|3K5C|B Chain B, Human Bace-1 Complex With Nb-216
pdb|3K5C|C Chain C, Human Bace-1 Complex With Nb-216
pdb|3K5F|A Chain A, Human Bace-1 Complex With Ayh011
pdb|3K5F|B Chain B, Human Bace-1 Complex With Ayh011
pdb|3K5F|C Chain C, Human Bace-1 Complex With Ayh011
pdb|3K5G|A Chain A, Human Bace-1 Complex With Bjc060
pdb|3K5G|B Chain B, Human Bace-1 Complex With Bjc060
pdb|3K5G|C Chain C, Human Bace-1 Complex With Bjc060
pdb|3PI5|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3PI5|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Bfg356
pdb|3QBH|A Chain A, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|B Chain B, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3QBH|C Chain C, Structure Based Design, Synthesis And Sar Of Cyclic
Hydroxyethylamine (Hea) Bace-1 Inhibitors
pdb|3VEU|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Avi326
pdb|3VF3|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bqq711
pdb|3VG1|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Soaking Experiment
pdb|4D83|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D83|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bur436, Derived From A Co-Crystallization Experiment
pdb|4D88|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxq490
pdb|4D89|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Soaking Experiment
pdb|4D8C|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|B Chain B, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
pdb|4D8C|C Chain C, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bxd552, Derived From A Co-Crystallization Experiment
Length = 402
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 185 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 237
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 238 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 286
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 287 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 343
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 344 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 388
>pdb|2ZJN|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Chloro-2-Isopropoxy-3-Methoxy-Benzyl)-
Piperidin-4-Yl]-2-(2-Methyl-4-Sulfamoyl-Phenoxy)-
Acetamide
pdb|3H0B|A Chain A, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|B Chain B, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
pdb|3H0B|C Chain C, Discovery Of Aminoheterocycles As A Novel Beta-Secretase
Inhibitor Class
Length = 405
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 189 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 241
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 242 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 290
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 291 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 347
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 348 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 392
>pdb|3IXK|A Chain A, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|B Chain B, Potent Beta-Secretase 1 Inhibitor
pdb|3IXK|C Chain C, Potent Beta-Secretase 1 Inhibitor
pdb|3KYR|A Chain A, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|B Chain B, Bace-1 In Complex With A Norstatine Type Inhibitor
pdb|3KYR|C Chain C, Bace-1 In Complex With A Norstatine Type Inhibitor
Length = 405
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 189 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 241
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 242 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 290
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 291 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 347
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 348 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 392
>pdb|3U6A|A Chain A, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|B Chain B, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
pdb|3U6A|C Chain C, Rational Design And Synthesis Of Aminopiperazinones As
Beta Secretase (Bace) Inhibitors
Length = 390
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 174 SVGGSMIIGGIDHSLYTGSLWYTPIRREW----YYEVIIVRVEINGQDLK---MDCKEYN 226
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 227 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 275
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 276 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 332
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 333 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 377
>pdb|3VV6|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6- ((1s,
2r)-2-Phenylcyclopropyl)pyrimidin-4(3h)-One
pdb|3VV7|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-6-((1s,2r)-
2-(3'-Methoxybiphenyl-3-Yl)cyclopropyl)-3-
Methylpyrimidin-4(3h)-One
pdb|3VV8|A Chain A, Crystal Structure Of Beta Secetase In Complex With
2-Amino-3-Methyl-6-
((1s,
2r)-2-(3'-Methylbiphenyl-4-Yl)cyclopropyl)pyrimidin-
4(3h)-One
Length = 416
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 192 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 244
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 245 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 293
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 294 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 350
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 351 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 395
>pdb|2Q15|A Chain A, Structure Of Bace Complexed To Compound 3a
Length = 385
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 169 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 221
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 222 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 270
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 271 QAGTTPWNIFPVISLYLMGEVTQQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 327
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 328 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 372
>pdb|1SGZ|A Chain A, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|B Chain B, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|C Chain C, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1SGZ|D Chain D, Crystal Structure Of Unbound Beta-Secretase Catalytic
Domain.
pdb|1XS7|D Chain D, Crystal Structure Of A Cycloamide-Urethane-Derived Novel
Inhibitor Bound To Human Brain Memapsin 2
(Beta-Secretase).
pdb|1XN2|A Chain A, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|B Chain B, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|C Chain C, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN2|D Chain D, New Substrate Binding Pockets For Beta-Secretase.
pdb|1XN3|A Chain A, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|B Chain B, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|C Chain C, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|1XN3|D Chain D, Crystal Structure Of Beta-Secretase Bound To A Long
Inhibitor With Additional Upstream Residues.
pdb|2G94|A Chain A, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|B Chain B, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|C Chain C, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2G94|D Chain D, Crystal Structure Of Beta-secretase Bound To A Potent And
Highly Selective Inhibitor.
pdb|2P4J|A Chain A, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|B Chain B, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|C Chain C, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2P4J|D Chain D, Crystal Structure Of Beta-Secretase Bond To An Inhibitor
With Isophthalamide Derivatives At P2-P3
pdb|2VKM|A Chain A, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|B Chain B, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|C Chain C, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|2VKM|D Chain D, Crystal Structure Of Grl-8234 Bound To Bace
(Beta-Secretase)
pdb|3UFL|A Chain A, Discovery Of Pyrrolidine-Based B-Secretase Inhibitors:
Lead Advancement Through Conformational Design For
Maintenance Of Ligand Binding Efficiency
Length = 389
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 173 SVGGSMIIGGIDHSLYTGSLWYTPIRREW----YYEVIIVRVEINGQDLK---MDCKEYN 225
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 226 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 274
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 275 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 331
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 332 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 376
>pdb|3L58|A Chain A, Structure Of Bace Bound To Sch589432
pdb|3L58|B Chain B, Structure Of Bace Bound To Sch589432
pdb|3L59|A Chain A, Structure Of Bace Bound To Sch710413
pdb|3L59|B Chain B, Structure Of Bace Bound To Sch710413
pdb|3L5B|A Chain A, Structure Of Bace Bound To Sch713601
pdb|3L5B|B Chain B, Structure Of Bace Bound To Sch713601
pdb|3L5C|A Chain A, Structure Of Bace Bound To Sch723871
pdb|3L5C|B Chain B, Structure Of Bace Bound To Sch723871
pdb|3L5D|A Chain A, Structure Of Bace Bound To Sch723873
pdb|3L5D|B Chain B, Structure Of Bace Bound To Sch723873
pdb|3L5E|A Chain A, Structure Of Bace Bound To Sch736062
pdb|3L5E|B Chain B, Structure Of Bace Bound To Sch736062
pdb|3L5F|A Chain A, Structure Of Bace Bound To Sch736201
pdb|3L5F|B Chain B, Structure Of Bace Bound To Sch736201
pdb|4DJU|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJU|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5,5-Diphenylimidazolidin- 4-One
pdb|4DJV|A Chain A, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJV|B Chain B, Structure Of Bace Bound To
2-Imino-5-(3'-Methoxy-[1,1'-Biphenyl]-3-
Yl)-3-Methyl-5-Phenylimidazolidin-4-One
pdb|4DJW|A Chain A, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJW|B Chain B, Structure Of Bace Bound To
2-Imino-3-Methyl-5-Phenyl-5-(3-(Pyridin-3-
Yl)phenyl)imidazolidin-4-One
pdb|4DJX|A Chain A, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJX|B Chain B, Structure Of Bace Bound To
5-(3-(5-Chloropyridin-3-Yl)phenyl)-5-
Cyclopropyl-2-Imino-3-Methylimidazolidin-4-One
pdb|4DJY|A Chain A, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4DJY|B Chain B, Structure Of Bace Bound To
(R)-5-Cyclopropyl-2-Imino-3-Methyl-5-(3-(5-
(Prop-1-Yn-1-Yl)pyridin-3-Yl)phenyl)imidazolidin-4-One
pdb|4H1E|A Chain A, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H1E|B Chain B, Structure Of Bace-1 Bound To
(7ar)-6-Benzoyl-7a-(4-(3-Cyanophenyl)
Thiophen-2-Yl)-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin- 2(3h)-Iminium
pdb|4H3J|A Chain A, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4H3J|B Chain B, Structure Of Bace Bound To
2-Fluoro-5-(5-(2-Imino-3-Methyl-4-Oxo-6-
Phenyloctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl)thiophen-2-Yl) Benzonitrile
pdb|4HA5|A Chain A, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4HA5|B Chain B, Structure Of Bace Bound To
(S)-3-(5-(2-Imino-1,4-Dimethyl-6-
Oxohexahydropyrimidin-4-Yl)thiophen-3-Yl)benzonitrile
pdb|4H3F|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3F|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(6-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3G|A Chain A, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3G|B Chain B, Structure Of Bace Bound To
2-((7ar)-7a-(4-(3-Cyanophenyl)thiophen-2-
Yl)-2-Imino-3-Methyl-4-Oxohexahydro-1h-Pyrrolo[3,
4-D]pyrimidin-6(2h)- Yl)nicotinonitrile
pdb|4H3I|A Chain A, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
pdb|4H3I|B Chain B, Structure Of Bace Bound To
3-(5-((7ar)-2-Imino-6-(3-Methoxypyridin-2-
Yl)-3-Methyl-4-Oxooctahydro-1h-Pyrrolo[3,
4-D]pyrimidin-7a-Yl) Thiophen-3-Yl)benzonitrile
Length = 414
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 190 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 242
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 243 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 291
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 292 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 348
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 349 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 393
>pdb|2VIE|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-1-Benzyl-2-Hydroxy-
3-((1,1,
5-Trimethylhexyl)amino)propyl)-3-(Ethylamino)-5-(2-
Oxopyrrolidin-1-Yl)benzamide
pdb|2VIJ|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(1,2,3,4-Tetrahydro-1-Naphthalenylamino)
Propyl)benzamide
pdb|2VIY|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Pentylsulfonyl)benzamide
pdb|2VIZ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-methyl-2-oxoethyl)amino)-2-hydroxy-1-
(
Phenylmethyl)propyl)-3-(2-oxo-1-pyrrolidinyl)-5-
(propyloxy) Benzamide
pdb|2VJ6|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2VJ7|A Chain A, Human Bace-1 In Complex With 3-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-1-(Phenylmethyl)-3-(((3-(Trifluoromethyl)phenyl)
Methyl)amino)propyl)-5-(2-Oxo-1-Pyrrolidinyl)benzamide
pdb|2VJ9|A Chain A, Human Bace-1 In Complex With
N-((1s,2r)-3-(Cyclohexylamino)-
2-Hydroxy-1-(Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-
Oxo- 1-Pyrrolidinyl)benzamide
pdb|2VNM|A Chain A, Human Bace-1 In Complex With
3-(1,1-Dioxidotetrahydro-2h-1,
2-Thiazin-2-Yl)-5-(Ethylamino)-N-((1s,2r)-2-Hydroxy-1-(
Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino) Propyl)benzamide
pdb|2VNN|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF4|A Chain A, Human Bace-1 In Complex With
6-Ethyl-1-Methyl-N-((1s)-2-Oxo-
1-(Phenylmethyl)-3-(Tetrahydro-2h-Pyran-4-
Ylamino)propyl)-
1,3,4,6-Tetrahydro(1,2)thiazepino(5,4,3-Cd)indole-8-
Carboxamide 2,2-Dioxide
pdb|2WEZ|A Chain A, Human Bace-1 In Complex With
1-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-4-(2-Oxo-1-Pyrrolidinyl)-1h-Indole-6-Carboxamide
pdb|2WF0|A Chain A, Human Bace-1 In Complex With
4-Ethyl-N-((1s,2r)-2-Hydroxy-1-
(Phenylmethyl)-3-(((3-
(Trifluoromethyl)phenyl)methyl)amino)
Propyl)-8-(2-Oxo-1-Pyrrolidinyl)-6-Quinolinecarboxamide
pdb|2WF1|A Chain A, Human Bace-1 In Complex With
7-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl(Methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4-Dihydro-1h-(1,2,5)thiadiazepino(3,
4,5- Hi)indole-9-Carboxamide 2,2-Dioxide
pdb|2WF2|A Chain A, Human Bace-1 In Complex With
8-Ethyl-N-((1s,2r)-2-Hydroxy-3-
(((3-(Methyloxy)phenyl)methyl)amino)-1-(Phenylmethyl)
Propyl)-1-Methyl-3,4,7,8-Tetrahydro-1h,6h-(1,2,5)
Thiadiazepino(5,4,3-De)quinoxaline-10-Carboxamide 2,2-
Dioxide
pdb|2WF3|A Chain A, Human Bace-1 In Complex With 6-(Ethylamino)-N-((1s,2r)-2-
Hydroxy-3-(((3-(Methyloxy)phenyl)methyl)amino)-1-(
Phenylmethyl)propyl)-1-Methyl-1,3,4,5-Tetrahydro-2,1-
Benzothiazepine-8-Carboxamide 2,2-Dioxide
pdb|2XFI|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-((Methylsulfonyl)(Phenyl)amino)
Benzamide
pdb|2XFJ|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
( Phenylmethyl)propyl)-3-(Ethylamino)-5-(2-Oxo-1-
Pyrrolidinyl)benzamide
pdb|2XFK|A Chain A, Human Bace-1 In Complex With N-((1s,2r)-3-(((1s)-2-(
Cyclohexylamino)-1-Methyl-2-Oxoethyl)amino)-2-Hydroxy-1-
(
Phenylmethyl)propyl)-3-(Ethylamino)-5-((Methylsulfonyl)(
Phenyl)amino)benzamide
Length = 392
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 170 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 222
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 223 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 271
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 272 QAGTTPWNIFPVISLYLMGEVTQQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 328
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 329 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 373
>pdb|3QI1|A Chain A, Design And Synthesis Of Hydroxyethylamine (Hea) Bace-1
Inhibitors: Prime Side Chromane-Containing Inhibitors
Length = 408
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 185 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 237
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 238 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 286
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 287 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 343
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 344 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 388
>pdb|4B1D|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
pdb|4B1E|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 388
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 173 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 225
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 226 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 274
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 275 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 331
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 332 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 376
>pdb|2HM1|A Chain A, Crystal Structure Of Human Beta-Secretase (Bace) In The
Presence Of An Inhibitor (2)
pdb|2IQG|A Chain A, Crystal Structure Of Hydroxyethyl Secondary Amine-Based
Peptidomimetic Inhibitor Of Human Beta-Secretase (Bace)
pdb|3IVH|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|A Chain A, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|B Chain B, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3IVI|C Chain C, Design And Synthesis Of Potent Bace-1 Inhibitors With
Cellular Activity: Structure-Activity Relationship Of P1
Substituents
pdb|3NSH|A Chain A, Bace-1 In Complex With Eln475957
pdb|3NSH|B Chain B, Bace-1 In Complex With Eln475957
pdb|3NSH|C Chain C, Bace-1 In Complex With Eln475957
pdb|3N4L|A Chain A, Bace-1 In Complex With Eln380842
pdb|3N4L|B Chain B, Bace-1 In Complex With Eln380842
pdb|3N4L|C Chain C, Bace-1 In Complex With Eln380842
Length = 406
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 175 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 227
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 228 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 276
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 277 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 333
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 334 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 378
>pdb|3UDH|A Chain A, Crystal Structure Of Bace With Compound 1
pdb|3UDJ|A Chain A, Crystal Structure Of Bace With Compound 5
pdb|3UDK|A Chain A, Crystal Structure Of Bace With Compound 6
pdb|3UDM|A Chain A, Crystal Structure Of Bace With Compound 8
pdb|3UDN|A Chain A, Crystal Structure Of Bace With Compound 9
pdb|3UDP|A Chain A, Crystal Structure Of Bace With Compound 12
pdb|3UDQ|A Chain A, Crystal Structure Of Bace With Compound 13
pdb|3UDR|A Chain A, Crystal Structure Of Bace With Compound 14
pdb|3UDY|A Chain A, Crystal Structure Of Bace With Compound 11
pdb|4FM7|A Chain A, Crystal Structure Of Bace With Compound 14g
pdb|4FM8|A Chain A, Crystal Structure Of Bace With Compound 12a
Length = 404
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 173 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 225
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 226 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 274
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 275 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 331
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 332 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 376
>pdb|3R1G|B Chain B, Structure Basis Of Allosteric Inhibition Of Bace1 By An
Exosite- Binding Antibody
Length = 402
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 176 SVGGSMIIGGIDHSLYTGSLWYTPIRREW----YYEVIIVRVEINGQDLK---MDCKEYN 228
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 229 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 277
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 278 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 334
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 335 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 379
>pdb|1YM4|A Chain A, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|B Chain B, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|1YM4|C Chain C, Crystal Structure Of Human Beta Secretase Complexed With
Nvp-Amk640
pdb|3K5D|A Chain A, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|B Chain B, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3K5D|C Chain C, Crystal Structure Of Bace-1 In Complex With Ahm178
pdb|3MSK|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3MSL|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|3S2O|A Chain A, Fragment Based Discovery And Optimisation Of Bace-1
Inhibitors
pdb|4D85|A Chain A, Crystal Structure Of Human Beta Secretase In Complex With
Nvp-Bvi151
Length = 408
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 185 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 237
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 238 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 286
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 287 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 343
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 344 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 388
>pdb|2FDP|A Chain A, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|B Chain B, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|2FDP|C Chain C, Crystal Structure Of Beta-Secretase Complexed With An
Amino- Ethylene Inhibitor
pdb|3IXJ|A Chain A, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|B Chain B, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|3IXJ|C Chain C, Crystal Structure Of Beta-Secretase 1 In Complex With
Selective Beta-Secretase 1 Inhibitor
pdb|4GID|A Chain A, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|B Chain B, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|C Chain C, Structure Of Beta-Secretase Complexed With Inhibitor
pdb|4GID|D Chain D, Structure Of Beta-Secretase Complexed With Inhibitor
Length = 388
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 172 SVGGSMIIGGIDHSLYTGSLWYTPIRREW----YYEVIIVRVEINGQDLK---MDCKEYN 224
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 225 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 273
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 274 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 330
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 331 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 375
>pdb|4EWO|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
pdb|4EXG|A Chain A, Design And Synthesis Of Potent Hydroxyethylamine (Hea)
Bace-1 Inhibitors
Length = 386
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 170 SVGGSMIIGGIDHSLYTGSLWYTPIRREW----YYEVIIVRVEINGQDLK---MDCKEYN 222
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 223 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 271
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 272 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 328
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 329 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 373
>pdb|2QU2|A Chain A, Bace1 With Compound 1
pdb|2QU3|A Chain A, Bace1 With Compound 2
pdb|2ZDZ|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 3.B.10
pdb|2ZE1|A Chain A, X-Ray Structure Of Bace-1 In Complex With Compound 6g
pdb|3IGB|A Chain A, Bace-1 With Compound 3
pdb|3IN3|A Chain A, Bace1 With Compound 30
pdb|3IN4|A Chain A, Bace1 With Compound 38
pdb|3IND|A Chain A, Bace1 With The Aminohydantoin Compound 29
pdb|3INE|A Chain A, Bace1 With The Aminohydantoin Compound S-34
pdb|3INF|A Chain A, Bace1 With The Aminohydantoin Compound 37
pdb|3INH|A Chain A, Bace1 With The Aminohydantoin Compound R-58
pdb|3LHG|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 4g
pdb|3L38|A Chain A, Bace1 In Complex With The Aminopyridine Compound 44
pdb|3L3A|A Chain A, Bace-1 With The Aminopyridine Compound 32
pdb|3OOZ|A Chain A, Bace1 In Complex With The Aminohydantoin Compound 102
pdb|3S7L|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
pdb|3S7M|A Chain A, Pyrazolyl And Thienyl Aminohydantoins As Potent Bace1
Inhibitors
Length = 415
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 185 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 237
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 238 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 286
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 287 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 343
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 344 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 388
>pdb|3TPR|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQR|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQR|C Chain C, Crystal Structure Of Bace1 With Its Inhibitor
Length = 433
Score = 32.3 bits (72), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 209 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 261
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 262 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 310
Query: 294 NNTFTD-DLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 311 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 367
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 368 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 412
>pdb|2ZHR|A Chain A, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHR|B Chain B, Crystal Structure Of Bace1 In Complex With Om99-2 At Ph
5.0
pdb|2ZHS|A Chain A, Crystal Structure Of Bace1 At Ph 4.0
pdb|2ZHT|A Chain A, Crystal Structure Of Bace1 At Ph 4.5
pdb|2ZHU|A Chain A, Crystal Structure Of Bace1 At Ph 5.0
pdb|2ZHV|A Chain A, Crystal Structure Of Bace1 At Ph 7.0
Length = 411
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 187 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 239
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 240 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 288
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 289 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 345
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 346 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 390
>pdb|3TPJ|A Chain A, Apo Structure Of Bace1
pdb|3TPL|A Chain A, Apo Structure Of Bace1
pdb|3TPL|B Chain B, Apo Structure Of Bace1
pdb|3TPL|C Chain C, Apo Structure Of Bace1
pdb|3TPP|A Chain A, Crystal Structure Of Bace1 Complexed With An Inhibitor
pdb|3UQP|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQU|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQW|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|3UQX|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DV9|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|A Chain A, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4DVF|B Chain B, Crystal Structure Of Bace1 With Its Inhibitor
pdb|4FGX|A Chain A, Crystal Structure Of Bace1 With Novel Inhibitor
Length = 433
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 209 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 261
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 262 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 310
Query: 294 NNTFTD-DLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 311 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 367
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 368 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 412
>pdb|3CKP|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKP|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|A Chain A, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|B Chain B, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|3CKR|C Chain C, Crystal Structure Of Bace-1 In Complex With Inhibitor
pdb|4FSL|A Chain A, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|B Chain B, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|D Chain D, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
pdb|4FSL|E Chain E, Crystal Structure Of Beta-Site App-Cleaving Enzyme 1
(Bace-Db-Mut) Complex With N-(N-(4-
Acetamido-3-Chloro-5-Methylbenzyl) Carbamimidoyl)-3-(4-
Methoxyphenyl)-5-Methyl-4-Isothiazolecarboxamide
Length = 412
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 188 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 240
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 241 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 289
Query: 294 NNTFTD-DLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 290 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 346
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 347 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 391
>pdb|3EXO|A Chain A, Crystal Structure Of Bace1 Bound To Inhibitor
Length = 413
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 189 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 241
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 242 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 290
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 291 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 347
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 348 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 392
>pdb|1W50|A Chain A, Apo Structure Of Bace (beta Secretase)
pdb|1W51|A Chain A, Bace (Beta Secretase) In Complex With A Nanomolar Non-
Peptidic Inhibitor
pdb|3RSV|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(R)-3-(2-Amino-6-
O-Tolylquinolin-3-Yl)-N-((R)-2,
2-Dimethyltetrahydro-2h-Pyran-4-Yl)-2- Methylpropanamide
pdb|3RSX|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(Thiophen-3- Yl)quinolin-2-Amine
pdb|3RTH|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
6-(2-(3,3- Dimethylbut-1-Ynyl)phenyl)quinolin-2-Amine
pdb|3RTM|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-Cyclohexyl-N-Methylpropanamide
pdb|3RTN|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
3-(2-Amino-6-O-
Tolylquinolin-3-Yl)-N-Cyclohexylpropanamide
pdb|3RU1|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With 3-(2-
Aminoquinolin-3-Yl)-N-(Cyclohexylmethyl)propanamide
pdb|3RVI|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
2-((2-Amino-6-O-
Tolylquinolin-3-Yl)methyl)-N-
(Cyclohexylmethyl)pentanamide
pdb|4ACU|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 14
pdb|4ACX|A Chain A, Aminoimidazoles As Bace-1 Inhibitors. X-Ray Crystal
Structure Of Beta Secretase Complexed With Compound 23
pdb|4DH6|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
(2r)-N-((2s,3r)-
1-(Benzo[d][1,
3]dioxol-5-Yl)-3-Hydroxy-4-((S)-6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridine]-4'-Ylamino)
Butan-2-Yl)-2-Methoxypropanamide
pdb|4FRI|A Chain A, Crystal Structure Of Bace1 In Complex With Biarylspiro
Aminooxazoline 6
pdb|4FRJ|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 9l
pdb|4FRK|A Chain A, Crystal Structure Of Bace1 In Complex With Aminooxazoline
Xanthene 11a
pdb|4DI2|A Chain A, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|B Chain B, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DI2|C Chain C, Crystal Structure Of Bace1 In Complex With
Hydroxyethylamine Inhibitor 37
pdb|4DUS|A Chain A, Structure Of Bace-1 (Beta-Secretase) In Complex With
N-((2s,3r)-1-(4-
Fluorophenyl)-3-Hydroxy-4-((6'-Neopentyl-3',4'-
Dihydrospiro[cyclobutane-1,2'-Pyrano[2,
3-B]pyridin]-4'-Yl)amino) Butan-2-Yl)acetamide
pdb|4AZY|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound 10)
pdb|4B00|A Chain A, Design And Synthesis Of Bace1 Inhibitors With In Vivo
Brain Reduction Of Beta-Amyloid Peptides (Compound
(R)-41)
pdb|4B05|A Chain A, Preclinical Characterization Of Azd3839, A Novel Clinical
Candidate Bace1 Inhibitor For The Treatment Of Alzheimer
Disease
Length = 411
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 188 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 240
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 241 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 289
Query: 294 NNTFTD-DLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 290 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 346
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 347 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 391
>pdb|2WJO|A Chain A, Human Bace (Beta Secretase) In Complex With
Cyclohexanecarboxylic Acid (2-(2-Am Ino-6-Phenoxy-4h-
Quinazolin-3-Yl)-2-Cyclohexyl-Ethyl)-Amide
Length = 412
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 173 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 225
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 226 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 274
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 275 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 331
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 332 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 376
>pdb|3HVG|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HVG|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ev0
pdb|3HW1|A Chain A, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|B Chain B, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3HW1|C Chain C, Structure Of Bace (Beta Secretase) In Complex With Ligand
Ev2
pdb|3MSJ|A Chain A, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|B Chain B, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
pdb|3MSJ|C Chain C, Structure Of Bace (Beta Secretase) In Complex With
Inhibitor
Length = 411
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 188 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 240
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 241 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 289
Query: 294 NNTFTD-DLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 290 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 346
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 347 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 391
>pdb|2ZJI|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(2,
6-Dimethoxy-Benzyl)-Piperidin-4-Yl]-4-Mercapto-
Butyramide
Length = 405
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 95/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 189 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 241
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 242 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 290
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 291 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 347
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 348 SCGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 392
>pdb|4B1C|A Chain A, New Aminoimidazoles As Bace-1 Inhibitors: From Rational
Design To Ab-Lowering In Brain
Length = 375
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 87/209 (41%), Gaps = 37/209 (17%)
Query: 194 NLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHL 253
+L +TP+ + YY + + + I L + +E++ + +VDSGTT L
Sbjct: 179 SLWYTPIRREW----YYEVIIVRVEINGQDLK---MDCKEYNYDKS---IVDSGTTNLRL 228
Query: 254 PEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCPN-NTFTDDLFPSITFHFL 310
P+ + + ++ S+ +P GF L ++ C T ++FP I+ + +
Sbjct: 229 PKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCWQAGTTPWNIFPVISLYLM 280
Query: 311 NNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDGDYGPSGVFGSFQQQNVEV 364
V+ +LPQ + +S C F ++ G V G+ + V
Sbjct: 281 GEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQSSTGT--VMGAVIMEGFYV 335
Query: 365 VYDLEKERIGFQPMDCA-----STASAQG 388
V+D ++RIGF C TA+ +G
Sbjct: 336 VFDRARKRIGFAVSACHVHDEFRTAAVEG 364
>pdb|1HTR|B Chain B, Crystal And Molecular Structures Of Human Progastricsin At
1.62 Angstroms Resolution
pdb|1AVF|A Chain A, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
pdb|1AVF|J Chain J, Activation Intermediate 2 Of Human Gastricsin From Human
Stomach
Length = 329
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 121/307 (39%), Gaps = 55/307 (17%)
Query: 82 KSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGS------T 135
ST +F+ YG G L TG DTL V ++P FG +
Sbjct: 61 SSTYSTNGQTFSLQYGSGSL-TGFFGYDTLTVQS------IQVPNQEFGLSENEPGTNFV 113
Query: 136 YREPIGIAGFGRGALSV----PSQLGFLQKGF--SHCFLAFKYANDPNISSPLVIGDVAI 189
Y + GI G ALSV + G +Q+G S F + + +V G V
Sbjct: 114 YAQFDGIMGLAYPALSVDEATTAMQGMVQEGALTSPVFSVYLSNQQGSSGGAVVFGGVDS 173
Query: 190 S-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFDSQGNGGLLVDSGT 248
S + + P+ + Y+ IG+E IG + + S+G + VD+GT
Sbjct: 174 SLYTGQIYWAPVTQEL----YWQIGIEEFLIGGQA--------SGWCSEGCQAI-VDTGT 220
Query: 249 TYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFPSITFH 308
+ +P+ + S L LQ+T A+E E + V C N+ + PS+TF
Sbjct: 221 SLLTVPQQYMSAL---LQAT-----GAQEDEYGQ-----FLVNC--NSIQN--LPSLTF- 262
Query: 309 FLNNVSLVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDGDYGPSGVFGSFQQQNVEVVYDL 368
+N V LP ++ + + L S +G P + G ++ VYDL
Sbjct: 263 IINGVEFPLPPSSYILSNNGYCTVGVEPTYL--SSQNGQ--PLWILGDVFLRSYYSVYDL 318
Query: 369 EKERIGF 375
R+GF
Sbjct: 319 GNNRVGF 325
>pdb|2ZJH|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-(1-Benzyl-Piperidin-4-Yl)-4-Mercapto-Butyramide
pdb|2ZJL|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With
N-[1-(5-Bromo-2,3-Dimethoxy-Benzyl)-Piperidin-
4-Yl]-4-Mercapto-Butyramide
Length = 405
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 189 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 241
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSGTT LP+ + + ++ S+ +P GF L ++ C
Sbjct: 242 YDKS---IVDSGTTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 290
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 291 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 347
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G G+ + VV+D ++RIGF C TA+ +G
Sbjct: 348 STGT--CMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 392
>pdb|1LS5|A Chain A, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
pdb|1LS5|B Chain B, Crystal Structure Of Plasmepsin Iv From P. Falciparum In
Complex With Pepstatin A
Length = 328
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 28/136 (20%)
Query: 243 LVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLF 302
+VDSGT+ P F ++ + + F Y C N DDL
Sbjct: 212 VVDSGTSTITAPTSFLNKFFRDMNVI------------KVPFLPLYVTTCDN----DDL- 254
Query: 303 PSITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCLLF---QSMDDGDYGPSGVFGSFQQ 359
P++ FH NN + P+ FY M S+ C+L+ +DD + + G
Sbjct: 255 PTLEFHSRNNKYTLEPE---FY-MDPLSDIDPALCMLYILPVDIDDNTF----ILGDPFM 306
Query: 360 QNVEVVYDLEKERIGF 375
+ V+D EKE +GF
Sbjct: 307 RKYFTVFDYEKESVGF 322
>pdb|2ZJJ|A Chain A, Crystal Structure Of The Human Bace1 Catalytic Domain In
Complex With 4-(4-Fluoro-Benzyl)-Piperazine-2-Carboxylic
Acid (2-Mercapto-Ethyl)- Amide
Length = 405
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 49/227 (21%), Positives = 94/227 (41%), Gaps = 38/227 (16%)
Query: 177 NISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFD 235
++ ++IG + S +L +TP+ + YY + + + I L + +E++
Sbjct: 189 SVGGSMIIGGIDHSLYTGSLWYTPIRRE----WYYEVIIVRVEINGQDLK---MDCKEYN 241
Query: 236 SQGNGGLLVDSGTTYTHLPEPFYSQLLSILQ--STITYYPRAKEVEERTGFDLCYRVPCP 293
+ +VDSG T LP+ + + ++ S+ +P GF L ++ C
Sbjct: 242 YDKS---IVDSGCTNLRLPKKVFEAAVKSIKAASSTEKFP--------DGFWLGEQLVCW 290
Query: 294 N-NTFTDDLFPSITFHFLNNVS------LVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDG 346
T ++FP I+ + + V+ +LPQ + +S C F ++
Sbjct: 291 QAGTTPWNIFPVISLYLMGEVTNQSFRITILPQ--QYLRPVEDVATSQDDCYKF-AISQS 347
Query: 347 DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCA-----STASAQG 388
G V G+ + VV+D ++RIGF C TA+ +G
Sbjct: 348 STGT--VMGAVIMEGFYVVFDRARKRIGFAVSACHVHDEFRTAAVEG 392
>pdb|1MPP|A Chain A, X-Ray Analyses Of Aspartic Proteinases. V. Structure And
Refinement At 2.0 Angstroms Resolution Of The Aspartic
Proteinase From Mucor Pusillus
Length = 361
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 70/185 (37%), Gaps = 25/185 (13%)
Query: 194 NLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHL 253
++Q+T +LKS ++ + + I S FD G +D+GT +
Sbjct: 195 DIQYTDVLKSRGGYFFWDAPVTGVKIDGSDAVS-------FD--GAQAFTIDTGTNFFIA 245
Query: 254 PEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFPSITFHFLNNV 313
P F +++ P A E ++ Y VPC + F S+ +
Sbjct: 246 PSSFAEKVVKAA------LPDATESQQ------GYTVPCSKYQDSKTTF-SLVLQKSGSS 292
Query: 314 SLVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERI 373
S + M P + S C+ F + DG G + G+ + VYD K RI
Sbjct: 293 SDTIDVSVPISKMLLPVDKSGETCM-FIVLPDG--GNQFIVGNLFLRFFVNVYDFGKNRI 349
Query: 374 GFQPM 378
GF P+
Sbjct: 350 GFAPL 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,073,204
Number of Sequences: 62578
Number of extensions: 509469
Number of successful extensions: 966
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 73
length of query: 394
length of database: 14,973,337
effective HSP length: 101
effective length of query: 293
effective length of database: 8,652,959
effective search space: 2535316987
effective search space used: 2535316987
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)