Query 037706
Match_columns 394
No_of_seqs 156 out of 1342
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 03:37:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037706.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/037706hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 2.5E-57 5.5E-62 449.3 36.6 328 2-382 98-430 (431)
2 cd05489 xylanase_inhibitor_I_l 100.0 4.6E-55 9.9E-60 424.1 34.7 333 1-378 9-361 (362)
3 KOG1339 Aspartyl protease [Pos 100.0 1.4E-51 3E-56 405.9 33.2 324 2-381 60-397 (398)
4 cd05472 cnd41_like Chloroplast 100.0 2E-51 4.2E-56 390.9 31.6 259 92-380 36-299 (299)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.3E-49 2.9E-54 382.5 27.9 283 2-381 17-326 (326)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 2.7E-49 5.8E-54 380.5 27.1 283 2-377 20-325 (325)
7 PTZ00165 aspartyl protease; Pr 100.0 9.5E-49 2.1E-53 390.2 28.9 292 1-386 133-454 (482)
8 cd05486 Cathespin_E Cathepsin 100.0 6.8E-49 1.5E-53 376.2 25.6 282 2-377 14-316 (316)
9 cd05478 pepsin_A Pepsin A, asp 100.0 1.8E-48 3.8E-53 373.5 26.2 276 2-377 24-317 (317)
10 cd05477 gastricsin Gastricsins 100.0 1.2E-47 2.5E-52 368.0 27.8 280 2-378 17-318 (318)
11 cd06098 phytepsin Phytepsin, a 100.0 1.5E-47 3.3E-52 366.8 27.5 272 2-377 24-317 (317)
12 cd05473 beta_secretase_like Be 100.0 4.2E-47 9.1E-52 370.6 27.7 309 1-385 16-352 (364)
13 cd05487 renin_like Renin stimu 100.0 5.7E-47 1.2E-51 364.4 26.5 286 2-378 22-326 (326)
14 cd05485 Cathepsin_D_like Cathe 100.0 7.1E-47 1.5E-51 364.0 26.2 282 2-377 25-329 (329)
15 cd05488 Proteinase_A_fungi Fun 100.0 8.5E-47 1.8E-51 362.3 26.1 276 2-377 24-320 (320)
16 cd05476 pepsin_A_like_plant Ch 100.0 4.6E-46 1E-50 347.9 27.2 229 92-380 33-265 (265)
17 cd05475 nucellin_like Nucellin 100.0 1.3E-45 2.7E-50 346.3 28.1 219 92-380 42-273 (273)
18 PTZ00147 plasmepsin-1; Provisi 100.0 5.6E-46 1.2E-50 367.6 26.5 276 2-379 153-450 (453)
19 PTZ00013 plasmepsin 4 (PM4); P 100.0 1.6E-45 3.4E-50 363.7 27.0 276 2-379 152-449 (450)
20 cd06097 Aspergillopepsin_like 100.0 5.1E-44 1.1E-48 336.5 23.2 247 2-377 14-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 2.3E-42 4.9E-47 328.0 24.2 245 92-378 32-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 1E-40 2.2E-45 319.6 15.3 283 2-378 15-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 3.3E-39 7.2E-44 303.9 24.8 252 2-377 14-283 (283)
24 PF14541 TAXi_C: Xylanase inhi 100.0 4.3E-28 9.4E-33 209.4 13.0 161 209-377 1-161 (161)
25 PF14543 TAXi_N: Xylanase inhi 99.9 3.2E-26 6.8E-31 198.0 11.0 147 2-186 14-164 (164)
26 cd05470 pepsin_retropepsin_lik 99.7 8.1E-18 1.8E-22 135.5 10.1 91 2-145 12-109 (109)
27 cd05483 retropepsin_like_bacte 97.1 0.0011 2.4E-08 51.1 5.2 50 92-147 45-94 (96)
28 PF13650 Asp_protease_2: Aspar 93.7 0.37 7.9E-06 36.2 7.3 47 94-147 44-90 (90)
29 PF11925 DUF3443: Protein of u 93.3 1.1 2.4E-05 43.0 11.1 49 96-148 84-149 (370)
30 TIGR02281 clan_AA_DTGA clan AA 89.4 0.98 2.1E-05 36.7 5.7 48 93-147 56-103 (121)
31 PF08284 RVP_2: Retroviral asp 87.0 3.6 7.8E-05 34.1 7.6 27 351-377 105-131 (135)
32 PF13650 Asp_protease_2: Aspar 83.5 1.7 3.7E-05 32.4 3.9 21 241-261 11-31 (90)
33 cd05484 retropepsin_like_LTR_2 81.2 2.7 5.8E-05 32.0 4.2 30 216-261 4-33 (91)
34 PF13975 gag-asp_proteas: gag- 79.8 3.3 7.2E-05 30.1 4.1 20 242-261 22-41 (72)
35 TIGR02281 clan_AA_DTGA clan AA 79.1 3.4 7.3E-05 33.5 4.4 35 208-261 10-44 (121)
36 cd05479 RP_DDI RP_DDI; retrope 78.6 7.5 0.00016 31.5 6.3 38 101-147 70-107 (124)
37 cd05483 retropepsin_like_bacte 75.4 5.5 0.00012 30.0 4.5 21 241-261 15-35 (96)
38 cd06095 RP_RTVL_H_like Retrope 70.7 6 0.00013 29.7 3.6 20 242-261 12-31 (86)
39 cd05479 RP_DDI RP_DDI; retrope 65.9 9.5 0.00021 30.9 4.0 25 351-375 100-124 (124)
40 PF00077 RVP: Retroviral aspar 63.3 7.4 0.00016 29.9 2.8 27 215-257 8-34 (100)
41 cd05481 retropepsin_like_LTR_1 56.4 14 0.0003 28.3 3.3 22 241-262 12-33 (93)
42 TIGR03698 clan_AA_DTGF clan AA 51.5 12 0.00025 29.6 2.1 23 351-373 85-107 (107)
43 cd05484 retropepsin_like_LTR_2 50.6 12 0.00026 28.3 2.1 17 2-18 12-28 (91)
44 COG5550 Predicted aspartyl pro 46.5 15 0.00032 29.8 2.0 21 242-262 29-50 (125)
45 PF09668 Asp_protease: Asparty 45.0 25 0.00054 28.7 3.1 29 216-260 28-56 (124)
46 cd05470 pepsin_retropepsin_lik 42.1 19 0.00041 27.9 2.1 17 241-257 13-29 (109)
47 COG3577 Predicted aspartyl pro 39.5 54 0.0012 29.1 4.5 34 207-259 103-136 (215)
48 PF02160 Peptidase_A3: Caulifl 38.7 42 0.00092 29.8 3.8 53 300-377 65-117 (201)
49 PF12384 Peptidase_A2B: Ty3 tr 33.7 82 0.0018 27.0 4.6 22 241-262 47-68 (177)
50 cd06096 Plasmepsin_5 Plasmepsi 26.0 64 0.0014 30.7 3.2 16 241-256 18-33 (326)
51 cd06097 Aspergillopepsin_like 23.8 58 0.0013 30.2 2.3 17 241-257 15-31 (278)
52 cd05477 gastricsin Gastricsins 20.8 85 0.0019 29.7 2.9 16 241-256 18-33 (318)
53 cd05490 Cathepsin_D2 Cathepsin 20.6 81 0.0018 29.9 2.7 16 241-256 21-36 (325)
54 cd05476 pepsin_A_like_plant Ch 20.6 76 0.0017 29.1 2.4 15 241-255 16-30 (265)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2.5e-57 Score=449.27 Aligned_cols=328 Identities=34% Similarity=0.588 Sum_probs=262.1
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCcccC
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCMDCDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLSTLL 81 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~~C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~~~ 81 (394)
|.|+|||||+++||+|. +|..|..+ .++.|||++|+||+.++|.++.|...... ..|..
T Consensus 98 ~~vi~DTGS~l~Wv~C~----~C~~C~~~----~~~~fdps~SST~~~~~C~s~~C~~~~~~---------~~c~~---- 156 (431)
T PLN03146 98 ILAIADTGSDLIWTQCK----PCDDCYKQ----VSPLFDPKKSSTYKDVSCDSSQCQALGNQ---------ASCSD---- 156 (431)
T ss_pred EEEEECCCCCcceEcCC----CCcccccC----CCCcccCCCCCCCcccCCCCcccccCCCC---------CCCCC----
Confidence 78999999999999999 89999864 47899999999999999999999765432 12321
Q ss_pred CCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCCC----CcceEeecCCCCCChhhhhc
Q 037706 82 KSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTYR----EPIGIAGFGRGALSVPSQLG 157 (394)
Q Consensus 82 ~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~~----~~dGIlGLg~~~~S~~~ql~ 157 (394)
++.|. |.+.|++|+.+.|++++|+|+|++...+ .++++++.|||+..+.+ ..+||||||+..+|+++||.
T Consensus 157 ----~~~c~-y~i~Ygdgs~~~G~l~~Dtltlg~~~~~-~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~ 230 (431)
T PLN03146 157 ----ENTCT-YSYSYGDGSFTKGNLAVETLTIGSTSGR-PVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLG 230 (431)
T ss_pred ----CCCCe-eEEEeCCCCceeeEEEEEEEEeccCCCC-cceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhh
Confidence 34588 9999999998789999999999874321 24688999999987643 37999999999999999998
Q ss_pred c-CCCceEEeccCccCCCCCCCCccEEEcccCcCCCCCceeecCccCCCCCCceEEEeeEEEECCEEeeeecCcceeccC
Q 037706 158 F-LQKGFSHCFLAFKYANDPNISSPLVIGDVAISSKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFDS 236 (394)
Q Consensus 158 ~-~~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~~~~~~~~~p~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~ 236 (394)
. +.++|||||.+.. ++....|.|+||+........+.|+|++.+.. +.+|.|.|++|+||++ .+.++...+. .
T Consensus 231 ~~~~~~FSycL~~~~--~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~-~l~~~~~~~~--~ 304 (431)
T PLN03146 231 SSIGGKFSYCLVPLS--SDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSK-KLPYTGSSKN--G 304 (431)
T ss_pred HhhCCcEEEECCCCC--CCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCE-ECcCCccccc--c
Confidence 6 6679999997531 11235799999985322234589999986432 4689999999999999 8887665443 2
Q ss_pred CCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCCCCCeEEEEEeCCeEEE
Q 037706 237 QGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFPSITFHFLNNVSLV 316 (394)
Q Consensus 237 ~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~ 316 (394)
.+.+++||||||++++||+++|++|+++|.+++... ... .....++.||... . ...+|+|+|+|+ |+.+.
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~-~~~--~~~~~~~~C~~~~-----~-~~~~P~i~~~F~-Ga~~~ 374 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGE-RVS--DPQGLLSLCYSST-----S-DIKLPIITAHFT-GADVK 374 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccc-cCC--CCCCCCCccccCC-----C-CCCCCeEEEEEC-CCeee
Confidence 345689999999999999999999999999888631 111 1122467899752 1 246899999996 69999
Q ss_pred ecCCCeEEEecCCCCCCceEEEEEEeCCCCCCCCceeecccceeeeEEEEeCCCCEEEEecCCCcc
Q 037706 317 LPQGNHFYAMSAPSNSSAVKCLLFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDCAS 382 (394)
Q Consensus 317 i~~~~y~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~~~c~~ 382 (394)
|+|++|++... .+.+|++++... +.||||+.|||++|||||++++|||||+.+|..
T Consensus 375 l~~~~~~~~~~-----~~~~Cl~~~~~~-----~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 375 LQPLNTFVKVS-----EDLVCFAMIPTS-----SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred cCcceeEEEcC-----CCcEEEEEecCC-----CceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 99999998764 346899887553 369999999999999999999999999999975
No 2
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=4.6e-55 Score=424.15 Aligned_cols=333 Identities=26% Similarity=0.436 Sum_probs=256.1
Q ss_pred CEEEEEEcCCcceeEcCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCccc
Q 037706 1 VIQVYMDTGSDLTWVPCGNLSFDCMDCDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLSTL 80 (394)
Q Consensus 1 ~f~v~iDTGS~~~Wv~~~~~~~~C~~C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~~ 80 (394)
+|.|+|||||+++||+|. + .+|+||..++|.++.|+..... .|.. .|...
T Consensus 9 ~~~~~~DTGS~l~WvqC~----~------------------~~sst~~~~~C~s~~C~~~~~~-----~~~~-~~~~~-- 58 (362)
T cd05489 9 AVPLVLDLAGPLLWSTCD----A------------------GHSSTYQTVPCSSSVCSLANRY-----HCPG-TCGGA-- 58 (362)
T ss_pred CeeEEEECCCCceeeeCC----C------------------CCcCCCCccCcCChhhcccccc-----CCCc-cccCC--
Confidence 379999999999999998 2 2578999999999999876543 1221 22111
Q ss_pred CCCCC-CCCCCCcEEe-ecCCCeEEEEEEEEEEEeecCCCCc--eeecCcEEEecccCCC--C---CcceEeecCCCCCC
Q 037706 81 LKSTC-CRPCPSFAYT-YGEGGLVTGILTRDTLKVHGSSPGI--IREIPKFCFGCVGSTY--R---EPIGIAGFGRGALS 151 (394)
Q Consensus 81 ~~~~~-~~~c~~~~i~-Yg~Gs~~~G~~~~D~v~l~~~~~~~--~~~~~~~~fg~~~~~~--~---~~dGIlGLg~~~~S 151 (394)
.+..| ++.|. |... |++|+.++|++++|+|+|+..++.. ..+++++.|||+.... + ..|||||||++.+|
T Consensus 59 ~~~~c~~~~C~-y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lS 137 (362)
T cd05489 59 PGPGCGNNTCT-AHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLS 137 (362)
T ss_pred CCCCCCCCcCe-eEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccc
Confidence 11234 56788 8664 8899888899999999998643321 1368899999998753 1 37999999999999
Q ss_pred hhhhhcc---CCCceEEeccCccCCCCCCCCccEEEcccCcCC-------CCCceeecCccCCCCCCceEEEeeEEEECC
Q 037706 152 VPSQLGF---LQKGFSHCFLAFKYANDPNISSPLVIGDVAISS-------KDNLQFTPMLKSPMYPNYYYIGLEAITIGN 221 (394)
Q Consensus 152 ~~~ql~~---~~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~~-------~~~~~~~p~~~~~~~~~~y~v~l~~i~v~~ 221 (394)
++.||.. .+++|||||.+. +..+|.|+||+.+..+ .+.+.|+||+.++..+.+|.|+|++|+||+
T Consensus 138 l~sql~~~~~~~~~FS~CL~~~-----~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~ 212 (362)
T cd05489 138 LPAQLASAFGVARKFALCLPSS-----PGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNG 212 (362)
T ss_pred hHHHhhhhcCCCcceEEEeCCC-----CCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECC
Confidence 9999986 358999999863 2358999999998642 378999999987644578999999999999
Q ss_pred EEeeeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCCC
Q 037706 222 SSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDL 301 (394)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 301 (394)
+ .+.+++..+.+...+.+++||||||++++||+++|++|.++|.+++......... ....+.||.............
T Consensus 213 ~-~l~~~~~~~~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~--~~~~~~C~~~~~~~~~~~~~~ 289 (362)
T cd05489 213 H-AVPLNPTLSANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAA--AVFPELCYPASALGNTRLGYA 289 (362)
T ss_pred E-ECCCCchhccccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCC--CCCcCccccCCCcCCcccccc
Confidence 9 8887666554444556789999999999999999999999999887642222111 111369998632211112367
Q ss_pred CCeEEEEEeC-CeEEEecCCCeEEEecCCCCCCceEEEEEEeCCCCCCCCceeecccceeeeEEEEeCCCCEEEEecC
Q 037706 302 FPSITFHFLN-NVSLVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERIGFQPM 378 (394)
Q Consensus 302 ~P~i~f~f~g-g~~~~i~~~~y~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~~ 378 (394)
+|+|+|+|+| |+.|+|+|++|+++.. .+.+|++|+..... ..+.||||++|||++|+|||++++|||||++
T Consensus 290 ~P~it~~f~g~g~~~~l~~~ny~~~~~-----~~~~Cl~f~~~~~~-~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 290 VPAIDLVLDGGGVNWTIFGANSMVQVK-----GGVACLAFVDGGSE-PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred cceEEEEEeCCCeEEEEcCCceEEEcC-----CCcEEEEEeeCCCC-CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999987 7999999999999764 34689999876532 1357999999999999999999999999975
No 3
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-51 Score=405.94 Aligned_cols=324 Identities=34% Similarity=0.605 Sum_probs=259.5
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCC-CCCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCccc
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCM-DCDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLSTL 80 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~-~C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~~ 80 (394)
|.|+|||||+++||+|. +|. .|..+ .++.|+|++||||+.+.|.++.|...... |..
T Consensus 60 f~v~~DTGS~~lWV~c~----~c~~~C~~~----~~~~f~p~~SSt~~~~~c~~~~c~~~~~~-----------~~~--- 117 (398)
T KOG1339|consen 60 FTVVLDTGSDLLWVPCA----PCSSACYSQ----HNPIFDPSASSTYKSVGCSSPRCKSLPQS-----------CSP--- 117 (398)
T ss_pred eEEEEeCCCCceeeccc----ccccccccc----CCCccCccccccccccCCCCccccccccC-----------ccc---
Confidence 89999999999999998 898 79753 13449999999999999999999987541 211
Q ss_pred CCCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCCC------CcceEeecCCCCCChhh
Q 037706 81 LKSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTYR------EPIGIAGFGRGALSVPS 154 (394)
Q Consensus 81 ~~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~~------~~dGIlGLg~~~~S~~~ 154 (394)
++.|. |.|+||+|+.++|++++|+|+|++.+ .+.++++.|||+..+.+ ..|||||||+..+|+++
T Consensus 118 -----~~~C~-y~i~Ygd~~~~~G~l~~Dtv~~~~~~---~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~ 188 (398)
T KOG1339|consen 118 -----NSSCP-YSIQYGDGSSTSGYLATDTVTFGGTT---SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPS 188 (398)
T ss_pred -----CCcCc-eEEEeCCCCceeEEEEEEEEEEcccc---ccccccEEEEeeecCccccccccccceEeecCCCCcccee
Confidence 66788 99999998777799999999999843 15667899999998753 47999999999999999
Q ss_pred hhcc---CCCceEEeccCccCCCCCCCCccEEEcccCcC-CCCCceeecCccCCCCCCceEEEeeEEEECCEEeeeecCc
Q 037706 155 QLGF---LQKGFSHCFLAFKYANDPNISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLS 230 (394)
Q Consensus 155 ql~~---~~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~-~~~~~~~~p~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~ 230 (394)
|+.. ..++||+||.+.... ...+|.|+||++|.. ..+.+.|+||+.+.. .+|.|.+++|+|+++ . .++..
T Consensus 189 q~~~~~~~~~~FS~cL~~~~~~--~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~-~-~~~~~ 262 (398)
T KOG1339|consen 189 QLPSFYNAINVFSYCLSSNGSP--SSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGK-R-PIGSS 262 (398)
T ss_pred ecccccCCceeEEEEeCCCCCC--CCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCc-c-CCCcc
Confidence 9987 345799999985211 135899999999998 477899999987654 589999999999998 5 55444
Q ss_pred ceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCCCCCeEEEEEe
Q 037706 231 LREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFPSITFHFL 310 (394)
Q Consensus 231 ~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~ 310 (394)
.+... ..++||||||++++||+++|++|+++|.+.+. . .......+..||.... ....+|.|.|+|.
T Consensus 263 ~~~~~---~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~-~----~~~~~~~~~~C~~~~~-----~~~~~P~i~~~f~ 329 (398)
T KOG1339|consen 263 LFCTD---GGGAIIDSGTSLTYLPTSAYNALREAIGAEVS-V----VGTDGEYFVPCFSIST-----SGVKLPDITFHFG 329 (398)
T ss_pred eEecC---CCCEEEECCcceeeccHHHHHHHHHHHHhhee-c----cccCCceeeecccCCC-----CcccCCcEEEEEC
Confidence 43321 47899999999999999999999999998741 0 0011123568998732 1146999999997
Q ss_pred CCeEEEecCCCeEEEecCCCCCCceEEEEEEeCCCCCCCCceeecccceeeeEEEEeCC-CCEEEEec--CCCc
Q 037706 311 NNVSLVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDGDYGPSGVFGSFQQQNVEVVYDLE-KERIGFQP--MDCA 381 (394)
Q Consensus 311 gg~~~~i~~~~y~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~-~~riGfa~--~~c~ 381 (394)
+|+.|.+++++|++...... ..|++++...... +.||||++||++++++||.. ++|||||+ .+|.
T Consensus 330 ~g~~~~l~~~~y~~~~~~~~----~~Cl~~~~~~~~~--~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 330 GGAVFSLPPKNYLVEVSDGG----GVCLAFFNGMDSG--PLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred CCcEEEeCccceEEEECCCC----CceeeEEecCCCC--ceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 68999999999999875321 1199877654421 48999999999999999999 99999999 6665
No 4
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=2e-51 Score=390.92 Aligned_cols=259 Identities=34% Similarity=0.631 Sum_probs=209.9
Q ss_pred cEEeecCCCeEEEEEEEEEEEeecCCCCcee-ecCcEEEecccCCCC---CcceEeecCCCCCChhhhhcc-CCCceEEe
Q 037706 92 FAYTYGEGGLVTGILTRDTLKVHGSSPGIIR-EIPKFCFGCVGSTYR---EPIGIAGFGRGALSVPSQLGF-LQKGFSHC 166 (394)
Q Consensus 92 ~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~-~~~~~~fg~~~~~~~---~~dGIlGLg~~~~S~~~ql~~-~~~~Fs~~ 166 (394)
|.++|++|+.++|++++|+|+|++ . .++++.|||+..+.+ ..+||||||+..+|++.|+.. .+++||+|
T Consensus 36 ~~i~Yg~Gs~~~G~~~~D~v~ig~------~~~~~~~~Fg~~~~~~~~~~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~ 109 (299)
T cd05472 36 YQVSYGDGSYTTGDLATDTLTLGS------SDVVPGFAFGCGHDNEGLFGGAAGLLGLGRGKLSLPSQTASSYGGVFSYC 109 (299)
T ss_pred eeeEeCCCceEEEEEEEEEEEeCC------CCccCCEEEECCccCCCccCCCCEEEECCCCcchHHHHhhHhhcCceEEE
Confidence 999999999877999999999998 4 778999999987643 489999999999999999876 67899999
Q ss_pred ccCccCCCCCCCCccEEEcccCcCCCCCceeecCccCCCCCCceEEEeeEEEECCEEeeeecCcceeccCCCCCceEEcc
Q 037706 167 FLAFKYANDPNISSPLVIGDVAISSKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFDSQGNGGLLVDS 246 (394)
Q Consensus 167 l~~~~~~~~~~~~G~l~fGg~d~~~~~~~~~~p~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~iiDS 246 (394)
|.+. .....|+|+||++|+. .+++.|+|++.++..+.+|.|+|++|+|+++ .+.++... .....+||||
T Consensus 110 L~~~----~~~~~G~l~fGg~d~~-~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~-~~~~~~~~-----~~~~~~ivDS 178 (299)
T cd05472 110 LPDR----SSSSSGYLSFGAAASV-PAGASFTPMLSNPRVPTFYYVGLTGISVGGR-RLPIPPAS-----FGAGGVIIDS 178 (299)
T ss_pred ccCC----CCCCCceEEeCCcccc-CCCceECCCccCCCCCCeEEEeeEEEEECCE-ECCCCccc-----cCCCCeEEeC
Confidence 9863 1245899999999988 8899999998765445689999999999999 77653211 1246799999
Q ss_pred cCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCCCCCeEEEEEeCCeEEEecCCCeEEEe
Q 037706 247 GTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFPSITFHFLNNVSLVLPQGNHFYAM 326 (394)
Q Consensus 247 GTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~y~~~~ 326 (394)
||++++||+++|++|.+++.+......... ....+..||..++. ....+|+|+|+|++++.|+|+|++|++..
T Consensus 179 GTt~~~lp~~~~~~l~~~l~~~~~~~~~~~---~~~~~~~C~~~~~~----~~~~~P~i~f~f~~g~~~~l~~~~y~~~~ 251 (299)
T cd05472 179 GTVITRLPPSAYAALRDAFRAAMAAYPRAP---GFSILDTCYDLSGF----RSVSVPTVSLHFQGGADVELDASGVLYPV 251 (299)
T ss_pred CCcceecCHHHHHHHHHHHHHHhccCCCCC---CCCCCCccCcCCCC----cCCccCCEEEEECCCCEEEeCcccEEEEe
Confidence 999999999999999999988764221111 11223469877431 13579999999976799999999999843
Q ss_pred cCCCCCCceEEEEEEeCCCCCCCCceeecccceeeeEEEEeCCCCEEEEecCCC
Q 037706 327 SAPSNSSAVKCLLFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDC 380 (394)
Q Consensus 327 ~~~~~~~~~~C~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~~~c 380 (394)
.. .+..|+++..... ..+.||||+.|||++|+|||++++|||||+++|
T Consensus 252 ~~----~~~~C~~~~~~~~--~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 252 DD----SSQVCLAFAGTSD--DGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred cC----CCCEEEEEeCCCC--CCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 22 3568998876532 134799999999999999999999999999999
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.3e-49 Score=382.52 Aligned_cols=283 Identities=26% Similarity=0.456 Sum_probs=220.7
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCcccC
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCMDCDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLSTLL 81 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~~C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~~~ 81 (394)
|.|+|||||+++||+|. .|.+|..+ .++.|+|++|+|++.+.|.+..|... ..|.
T Consensus 17 ~~v~~DTGS~~~wv~~~----~C~~c~~~----~~~~y~~~~Sst~~~~~C~~~~c~~~------------~~~~----- 71 (326)
T cd06096 17 QSLILDTGSSSLSFPCS----QCKNCGIH----MEPPYNLNNSITSSILYCDCNKCCYC------------LSCL----- 71 (326)
T ss_pred EEEEEeCCCCceEEecC----CCCCcCCC----CCCCcCcccccccccccCCCcccccc------------CcCC-----
Confidence 78999999999999999 89999864 46899999999999999998888321 1232
Q ss_pred CCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCc-eeecCcEEEecccCCCC-----CcceEeecCCCCCC-hh-
Q 037706 82 KSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGI-IREIPKFCFGCVGSTYR-----EPIGIAGFGRGALS-VP- 153 (394)
Q Consensus 82 ~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~-~~~~~~~~fg~~~~~~~-----~~dGIlGLg~~~~S-~~- 153 (394)
++.|. |.+.|++|+.+.|.+++|+|+|++..... .....++.|||+..+.+ ..+||||||+...+ ..
T Consensus 72 ----~~~~~-~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~ 146 (326)
T cd06096 72 ----NNKCE-YSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPT 146 (326)
T ss_pred ----CCcCc-EEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCc
Confidence 45688 99999999877799999999998742110 01112578999987543 47999999998643 21
Q ss_pred ------hhhccC--CCceEEeccCccCCCCCCCCccEEEcccCcCC-C----------CCceeecCccCCCCCCceEEEe
Q 037706 154 ------SQLGFL--QKGFSHCFLAFKYANDPNISSPLVIGDVAISS-K----------DNLQFTPMLKSPMYPNYYYIGL 214 (394)
Q Consensus 154 ------~ql~~~--~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~~-~----------~~~~~~p~~~~~~~~~~y~v~l 214 (394)
.|.... .++||+||++ ..|+|+||++|+.+ . +++.|+|+... .+|.|.+
T Consensus 147 ~~~~l~~~~~~~~~~~~FS~~l~~--------~~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~----~~y~v~l 214 (326)
T cd06096 147 PIILLFTKRPKLKKDKIFSICLSE--------DGGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK----YYYYVKL 214 (326)
T ss_pred hhHHHHHhcccccCCceEEEEEcC--------CCeEEEECccChhhhcccccccccccCCceEEeccCC----ceEEEEE
Confidence 111112 4899999985 36999999999873 4 78999998753 5899999
Q ss_pred eEEEECCEEeeeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCC
Q 037706 215 EAITIGNSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPN 294 (394)
Q Consensus 215 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~ 294 (394)
++|+|+++ ..... ......+||||||++++||+++|++|++++
T Consensus 215 ~~i~vg~~-~~~~~-------~~~~~~aivDSGTs~~~lp~~~~~~l~~~~----------------------------- 257 (326)
T cd06096 215 EGLSVYGT-TSNSG-------NTKGLGMLVDSGSTLSHFPEDLYNKINNFF----------------------------- 257 (326)
T ss_pred EEEEEccc-cccee-------cccCCCEEEeCCCCcccCCHHHHHHHHhhc-----------------------------
Confidence 99999988 51111 012467999999999999999998887643
Q ss_pred CCCCCCCCCeEEEEEeCCeEEEecCCCeEEEecCCCCCCceEEEEEEeCCCCCCCCceeecccceeeeEEEEeCCCCEEE
Q 037706 295 NTFTDDLFPSITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERIG 374 (394)
Q Consensus 295 ~~~~~~~~P~i~f~f~gg~~~~i~~~~y~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riG 374 (394)
|+|+|+|.+|+.++|+|++|++... ....|+++.... ..+|||++|||++|+|||++++|||
T Consensus 258 --------P~i~~~f~~g~~~~i~p~~y~~~~~-----~~~c~~~~~~~~-----~~~ILG~~flr~~y~vFD~~~~riG 319 (326)
T cd06096 258 --------PTITIIFENNLKIDWKPSSYLYKKE-----SFWCKGGEKSVS-----NKPILGASFFKNKQIIFDLDNNRIG 319 (326)
T ss_pred --------CcEEEEEcCCcEEEECHHHhccccC-----CceEEEEEecCC-----CceEEChHHhcCcEEEEECcCCEEe
Confidence 7899999767999999999998653 123444554332 3799999999999999999999999
Q ss_pred EecCCCc
Q 037706 375 FQPMDCA 381 (394)
Q Consensus 375 fa~~~c~ 381 (394)
||+++|.
T Consensus 320 fa~~~C~ 326 (326)
T cd06096 320 FVESNCP 326 (326)
T ss_pred eEcCCCC
Confidence 9999995
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.7e-49 Score=380.52 Aligned_cols=283 Identities=24% Similarity=0.386 Sum_probs=219.3
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCC----CCCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCC
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCM----DCDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSL 77 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~----~C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~ 77 (394)
|.|+|||||+++||+|. .|. .|.. ++.|+|++|+|++...
T Consensus 20 ~~v~~DTGSs~~Wv~~~----~C~~~~~~C~~------~~~y~~~~SsT~~~~~-------------------------- 63 (325)
T cd05490 20 FTVVFDTGSSNLWVPSV----HCSLLDIACWL------HHKYNSSKSSTYVKNG-------------------------- 63 (325)
T ss_pred EEEEEeCCCccEEEEcC----CCCCCCccccC------cCcCCcccCcceeeCC--------------------------
Confidence 78999999999999998 786 4653 6899999999997421
Q ss_pred cccCCCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCCC------CcceEeecCCCCCC
Q 037706 78 STLLKSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTYR------EPIGIAGFGRGALS 151 (394)
Q Consensus 78 ~~~~~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~~------~~dGIlGLg~~~~S 151 (394)
|. |.+.|++|++ +|.+++|+|+|++ ..++++.|||++...+ ..+||||||++..|
T Consensus 64 -----------~~-~~i~Yg~G~~-~G~~~~D~v~~g~------~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s 124 (325)
T cd05490 64 -----------TE-FAIQYGSGSL-SGYLSQDTVSIGG------LQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRIS 124 (325)
T ss_pred -----------cE-EEEEECCcEE-EEEEeeeEEEECC------EEEcCEEEEEEeeccCCcccceeeeEEEecCCcccc
Confidence 22 9999999986 5999999999998 7899999999976542 36999999997655
Q ss_pred h------hhhhcc----CCCceEEeccCccCCCCCCCCccEEEcccCcC-CCCCceeecCccCCCCCCceEEEeeEEEEC
Q 037706 152 V------PSQLGF----LQKGFSHCFLAFKYANDPNISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIG 220 (394)
Q Consensus 152 ~------~~ql~~----~~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~-~~~~~~~~p~~~~~~~~~~y~v~l~~i~v~ 220 (394)
. +.+|.. .+++||+||.+.. +...+|+|+|||+|+. +.+++.|+|+.. +.+|.|.+++|+|+
T Consensus 125 ~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~---~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~----~~~w~v~l~~i~vg 197 (325)
T cd05490 125 VDGVTPVFDNIMAQKLVEQNVFSFYLNRDP---DAQPGGELMLGGTDPKYYTGDLHYVNVTR----KAYWQIHMDQVDVG 197 (325)
T ss_pred ccCCCCHHHHHHhcCCCCCCEEEEEEeCCC---CCCCCCEEEECccCHHHcCCceEEEEcCc----ceEEEEEeeEEEEC
Confidence 3 345543 3689999998631 1234799999999987 488999999864 35899999999998
Q ss_pred CEEeeeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCC
Q 037706 221 NSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDD 300 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 300 (394)
+. ..... ....+||||||+++++|++++++|.+++.+. . .. ...|..+|.. ..
T Consensus 198 ~~-~~~~~---------~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~-~---~~---------~~~~~~~C~~----~~ 250 (325)
T cd05490 198 SG-LTLCK---------GGCEAIVDTGTSLITGPVEEVRALQKAIGAV-P---LI---------QGEYMIDCEK----IP 250 (325)
T ss_pred Ce-eeecC---------CCCEEEECCCCccccCCHHHHHHHHHHhCCc-c---cc---------CCCEEecccc----cc
Confidence 87 43221 1357999999999999999999999887532 1 10 1123344421 24
Q ss_pred CCCeEEEEEeCCeEEEecCCCeEEEecCCCCCCceEEE-EEEeCCCC-CCCCceeecccceeeeEEEEeCCCCEEEEec
Q 037706 301 LFPSITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCL-LFQSMDDG-DYGPSGVFGSFQQQNVEVVYDLEKERIGFQP 377 (394)
Q Consensus 301 ~~P~i~f~f~gg~~~~i~~~~y~~~~~~~~~~~~~~C~-~~~~~~~~-~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~ 377 (394)
.+|+|+|+| +|+.|+|+|++|+++.... ....|+ +|+..... .....||||++|||++|+|||++++|||||+
T Consensus 251 ~~P~i~f~f-gg~~~~l~~~~y~~~~~~~---~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 251 TLPVISFSL-GGKVYPLTGEDYILKVSQR---GTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred cCCCEEEEE-CCEEEEEChHHeEEeccCC---CCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 689999999 5799999999999875421 235898 67654321 1235799999999999999999999999985
No 7
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=9.5e-49 Score=390.17 Aligned_cols=292 Identities=19% Similarity=0.298 Sum_probs=228.3
Q ss_pred CEEEEEEcCCcceeEcCCCCCCCCCC--CCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCc
Q 037706 1 VIQVYMDTGSDLTWVPCGNLSFDCMD--CDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLS 78 (394)
Q Consensus 1 ~f~v~iDTGS~~~Wv~~~~~~~~C~~--C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~ 78 (394)
.|.|+|||||+++||+|. .|.. |.. ++.|+|++||||+.+.+..
T Consensus 133 ~f~Vv~DTGSS~lWVps~----~C~~~~C~~------~~~yd~s~SSTy~~~~~~~------------------------ 178 (482)
T PTZ00165 133 SFVVVFDTGSSNLWIPSK----ECKSGGCAP------HRKFDPKKSSTYTKLKLGD------------------------ 178 (482)
T ss_pred eEEEEEeCCCCCEEEEch----hcCcccccc------cCCCCccccCCcEecCCCC------------------------
Confidence 389999999999999998 7864 653 6899999999999754221
Q ss_pred ccCCCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCCC------CcceEeecCCCCCC-
Q 037706 79 TLLKSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTYR------EPIGIAGFGRGALS- 151 (394)
Q Consensus 79 ~~~~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~~------~~dGIlGLg~~~~S- 151 (394)
+... +.++||+|+.. |.+++|+|+|++ ++++++.||+++.+.+ .+|||||||++.++
T Consensus 179 --------~~~~-~~i~YGsGs~~-G~l~~DtV~ig~------l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~ 242 (482)
T PTZ00165 179 --------ESAE-TYIQYGTGECV-LALGKDTVKIGG------LKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDF 242 (482)
T ss_pred --------ccce-EEEEeCCCcEE-EEEEEEEEEECC------EEEccEEEEEEEeccccccccccccceeecCCCcccc
Confidence 0012 77999999987 999999999998 8999999999986532 37999999998653
Q ss_pred --------hhhhhcc----CCCceEEeccCccCCCCCCCCccEEEcccCcCC---CCCceeecCccCCCCCCceEEEeeE
Q 037706 152 --------VPSQLGF----LQKGFSHCFLAFKYANDPNISSPLVIGDVAISS---KDNLQFTPMLKSPMYPNYYYIGLEA 216 (394)
Q Consensus 152 --------~~~ql~~----~~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~~---~~~~~~~p~~~~~~~~~~y~v~l~~ 216 (394)
++.+|.. .+++||+||.+. ...+|+|+|||+|+.+ .+++.|+|+.. ..+|.|.+++
T Consensus 243 ~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~-----~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~----~~yW~i~l~~ 313 (482)
T PTZ00165 243 KESKKALPIVDNIKKQNLLKRNIFSFYMSKD-----LNQPGSISFGSADPKYTLEGHKIWWFPVIS----TDYWEIEVVD 313 (482)
T ss_pred cccCCCCCHHHHHHHcCCcccceEEEEeccC-----CCCCCEEEeCCcCHHHcCCCCceEEEEccc----cceEEEEeCe
Confidence 3344443 368999999863 3457999999999873 46899999975 3589999999
Q ss_pred EEECCEEeeeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCC
Q 037706 217 ITIGNSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNT 296 (394)
Q Consensus 217 i~v~~~~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~ 296 (394)
|+|+++ .+.... ....+|+||||+++++|+++|++|.+++.. ...|...
T Consensus 314 i~vgg~-~~~~~~--------~~~~aIiDTGTSli~lP~~~~~~i~~~i~~----------------~~~C~~~------ 362 (482)
T PTZ00165 314 ILIDGK-SLGFCD--------RKCKAAIDTGSSLITGPSSVINPLLEKIPL----------------EEDCSNK------ 362 (482)
T ss_pred EEECCE-EeeecC--------CceEEEEcCCCccEeCCHHHHHHHHHHcCC----------------ccccccc------
Confidence 999998 665431 135799999999999999999998887631 1256654
Q ss_pred CCCCCCCeEEEEEeC--C--eEEEecCCCeEEEecCCCCCCceEEE-EEEeCCCC-CCCCceeecccceeeeEEEEeCCC
Q 037706 297 FTDDLFPSITFHFLN--N--VSLVLPQGNHFYAMSAPSNSSAVKCL-LFQSMDDG-DYGPSGVFGSFQQQNVEVVYDLEK 370 (394)
Q Consensus 297 ~~~~~~P~i~f~f~g--g--~~~~i~~~~y~~~~~~~~~~~~~~C~-~~~~~~~~-~~~~~~ILG~~fl~~~yvvfD~~~ 370 (394)
..+|+|+|+|.| | +.|.|+|++|+++.... +.....|+ +++..+.. ..++.||||++|||++|+|||.+|
T Consensus 363 ---~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~-~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n 438 (482)
T PTZ00165 363 ---DSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDS-EEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDH 438 (482)
T ss_pred ---ccCCceEEEECCCCCceEEEEEchHHeeeecccC-CCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCC
Confidence 468999999953 1 38999999999874211 11356897 78865432 134689999999999999999999
Q ss_pred CEEEEecCCCcchhhh
Q 037706 371 ERIGFQPMDCASTASA 386 (394)
Q Consensus 371 ~riGfa~~~c~~~~~~ 386 (394)
+|||||+++|+...+.
T Consensus 439 ~rIGfA~a~~~~~~~~ 454 (482)
T PTZ00165 439 MMVGLVPAKHDQSGPN 454 (482)
T ss_pred CEEEEEeeccCCCCCc
Confidence 9999999998766543
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=6.8e-49 Score=376.21 Aligned_cols=282 Identities=28% Similarity=0.397 Sum_probs=220.2
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCC--CCCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCcc
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCM--DCDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLST 79 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~--~C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~ 79 (394)
|+|+|||||+++||+|. .|. .|.. ++.|+|++|+|++...|
T Consensus 14 ~~v~~DTGSs~~Wv~s~----~C~~~~C~~------~~~y~~~~SsT~~~~~~--------------------------- 56 (316)
T cd05486 14 FTVIFDTGSSNLWVPSI----YCTSQACTK------HNRFQPSESSTYVSNGE--------------------------- 56 (316)
T ss_pred EEEEEcCCCccEEEecC----CCCCcccCc------cceECCCCCcccccCCc---------------------------
Confidence 78999999999999998 786 5764 58999999999975432
Q ss_pred cCCCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCC------CCcceEeecCCCCCCh-
Q 037706 80 LLKSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTY------REPIGIAGFGRGALSV- 152 (394)
Q Consensus 80 ~~~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~------~~~dGIlGLg~~~~S~- 152 (394)
. |.+.|++|++. |.+++|+|+|++ +.+.++.|||+..+. ...|||||||++..+.
T Consensus 57 ----------~-~~i~Yg~g~~~-G~~~~D~v~ig~------~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~ 118 (316)
T cd05486 57 ----------A-FSIQYGTGSLT-GIIGIDQVTVEG------ITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVD 118 (316)
T ss_pred ----------E-EEEEeCCcEEE-EEeeecEEEECC------EEEcCEEEEEeeccCcccccccccceEeccCchhhccC
Confidence 2 99999999865 999999999998 788999999986543 2479999999976553
Q ss_pred -----hhhhcc----CCCceEEeccCccCCCCCCCCccEEEcccCcC-CCCCceeecCccCCCCCCceEEEeeEEEECCE
Q 037706 153 -----PSQLGF----LQKGFSHCFLAFKYANDPNISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNS 222 (394)
Q Consensus 153 -----~~ql~~----~~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~-~~~~~~~~p~~~~~~~~~~y~v~l~~i~v~~~ 222 (394)
..+|.. .+++||+||.+.. +....|.|+|||+|++ +.+++.|+|+.. +.+|.|.+++|+|+++
T Consensus 119 ~~~p~~~~l~~qg~i~~~~FS~~L~~~~---~~~~~g~l~fGg~d~~~~~g~l~~~pi~~----~~~w~v~l~~i~v~g~ 191 (316)
T cd05486 119 GVTPVFDNMMAQNLVELPMFSVYMSRNP---NSADGGELVFGGFDTSRFSGQLNWVPVTV----QGYWQIQLDNIQVGGT 191 (316)
T ss_pred CCCCHHHHHHhcCCCCCCEEEEEEccCC---CCCCCcEEEEcccCHHHcccceEEEECCC----ceEEEEEeeEEEEecc
Confidence 344443 2579999998631 1235799999999987 589999999864 3589999999999998
Q ss_pred EeeeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCCCC
Q 037706 223 SLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLF 302 (394)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ 302 (394)
.+.... ...+||||||++++||++++++|.+++.+... ..+|..+|.. ...+
T Consensus 192 -~~~~~~---------~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~~~--------------~~~~~~~C~~----~~~~ 243 (316)
T cd05486 192 -VIFCSD---------GCQAIVDTGTSLITGPSGDIKQLQNYIGATAT--------------DGEYGVDCST----LSLM 243 (316)
T ss_pred -eEecCC---------CCEEEECCCcchhhcCHHHHHHHHHHhCCccc--------------CCcEEEeccc----cccC
Confidence 664321 35799999999999999999998877642210 1224444421 2468
Q ss_pred CeEEEEEeCCeEEEecCCCeEEEecCCCCCCceEEE-EEEeCCCC-CCCCceeecccceeeeEEEEeCCCCEEEEec
Q 037706 303 PSITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCL-LFQSMDDG-DYGPSGVFGSFQQQNVEVVYDLEKERIGFQP 377 (394)
Q Consensus 303 P~i~f~f~gg~~~~i~~~~y~~~~~~~~~~~~~~C~-~~~~~~~~-~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~ 377 (394)
|+|+|+| +|+.|+|+|++|++..... ....|+ +|+..... ..++.||||++|||++|+|||.+++|||||+
T Consensus 244 p~i~f~f-~g~~~~l~~~~y~~~~~~~---~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 244 PSVTFTI-NGIPYSLSPQAYTLEDQSD---GGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CCEEEEE-CCEEEEeCHHHeEEecccC---CCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 9999999 5799999999999864211 245898 67654321 1235799999999999999999999999996
No 9
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.8e-48 Score=373.52 Aligned_cols=276 Identities=25% Similarity=0.371 Sum_probs=220.5
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCcccC
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCMDCDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLSTLL 81 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~~C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~~~ 81 (394)
|.|+|||||+++||+|. .|..|.- +.++.|+|++|+|++...|
T Consensus 24 ~~v~~DTGS~~~wv~~~----~C~~~~c----~~~~~f~~~~Sst~~~~~~----------------------------- 66 (317)
T cd05478 24 FTVIFDTGSSNLWVPSV----YCSSQAC----SNHNRFNPRQSSTYQSTGQ----------------------------- 66 (317)
T ss_pred EEEEEeCCCccEEEecC----CCCcccc----cccCcCCCCCCcceeeCCc-----------------------------
Confidence 78999999999999998 7875321 1368999999999986432
Q ss_pred CCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCCC------CcceEeecCCCCC-----
Q 037706 82 KSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTYR------EPIGIAGFGRGAL----- 150 (394)
Q Consensus 82 ~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~~------~~dGIlGLg~~~~----- 150 (394)
. |.+.|++|++ .|.+++|+|+|++ ++++++.|||+..+.+ ..+||||||+...
T Consensus 67 --------~-~~~~yg~gs~-~G~~~~D~v~ig~------~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~ 130 (317)
T cd05478 67 --------P-LSIQYGTGSM-TGILGYDTVQVGG------ISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGA 130 (317)
T ss_pred --------E-EEEEECCceE-EEEEeeeEEEECC------EEECCEEEEEEEecCccccccccccceeeeccchhcccCC
Confidence 2 9999999996 5999999999998 7889999999986532 3799999998754
Q ss_pred -Chhhhhcc----CCCceEEeccCccCCCCCCCCccEEEcccCcC-CCCCceeecCccCCCCCCceEEEeeEEEECCEEe
Q 037706 151 -SVPSQLGF----LQKGFSHCFLAFKYANDPNISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSL 224 (394)
Q Consensus 151 -S~~~ql~~----~~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~-~~~~~~~~p~~~~~~~~~~y~v~l~~i~v~~~~~ 224 (394)
+++.||.. .+++||+||.+. ....|+|+|||+|++ +.+++.|+|+.. +.+|.|.+++|.|+++ .
T Consensus 131 ~~~~~~L~~~g~i~~~~FS~~L~~~-----~~~~g~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~v~v~g~-~ 200 (317)
T cd05478 131 TPVFDNMMSQGLVSQDLFSVYLSSN-----GQQGSVVTFGGIDPSYYTGSLNWVPVTA----ETYWQITVDSVTINGQ-V 200 (317)
T ss_pred CCHHHHHHhCCCCCCCEEEEEeCCC-----CCCCeEEEEcccCHHHccCceEEEECCC----CcEEEEEeeEEEECCE-E
Confidence 36667664 258999999874 235799999999987 589999999864 3589999999999999 7
Q ss_pred eeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCCCCCe
Q 037706 225 TEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFPS 304 (394)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~ 304 (394)
+... .+..+||||||++++||+++|++|++++.+... . ..+|..+|.. ...+|.
T Consensus 201 ~~~~---------~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~~--------~-----~~~~~~~C~~----~~~~P~ 254 (317)
T cd05478 201 VACS---------GGCQAIVDTGTSLLVGPSSDIANIQSDIGASQN--------Q-----NGEMVVNCSS----ISSMPD 254 (317)
T ss_pred EccC---------CCCEEEECCCchhhhCCHHHHHHHHHHhCCccc--------c-----CCcEEeCCcC----cccCCc
Confidence 6542 135799999999999999999999988754321 0 1233444421 246899
Q ss_pred EEEEEeCCeEEEecCCCeEEEecCCCCCCceEEE-EEEeCCCCCCCCceeecccceeeeEEEEeCCCCEEEEec
Q 037706 305 ITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCL-LFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERIGFQP 377 (394)
Q Consensus 305 i~f~f~gg~~~~i~~~~y~~~~~~~~~~~~~~C~-~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~ 377 (394)
|+|+| +|+.|+|+|++|++.. ...|+ +|+.... ...||||++|||++|+|||++++|||||+
T Consensus 255 ~~f~f-~g~~~~i~~~~y~~~~-------~~~C~~~~~~~~~---~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 255 VVFTI-NGVQYPLPPSAYILQD-------QGSCTSGFQSMGL---GELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred EEEEE-CCEEEEECHHHheecC-------CCEEeEEEEeCCC---CCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 99999 5799999999999753 35899 5666543 24799999999999999999999999996
No 10
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.2e-47 Score=368.05 Aligned_cols=280 Identities=26% Similarity=0.381 Sum_probs=223.0
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCC--CCCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCcc
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCM--DCDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLST 79 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~--~C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~ 79 (394)
|.|+|||||+++||+|. .|. .|.. ++.|+|++|+|++...
T Consensus 17 ~~v~~DTGS~~~wv~~~----~C~~~~C~~------~~~f~~~~SsT~~~~~---------------------------- 58 (318)
T cd05477 17 FLVLFDTGSSNLWVPSV----LCQSQACTN------HTKFNPSQSSTYSTNG---------------------------- 58 (318)
T ss_pred EEEEEeCCCccEEEccC----CCCCccccc------cCCCCcccCCCceECC----------------------------
Confidence 78999999999999998 787 4654 6899999999997533
Q ss_pred cCCCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCCC------CcceEeecCCCC----
Q 037706 80 LLKSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTYR------EPIGIAGFGRGA---- 149 (394)
Q Consensus 80 ~~~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~~------~~dGIlGLg~~~---- 149 (394)
|. |++.|++|++. |.+++|+|+|++ ++++++.|||+....+ ..+||||||++.
T Consensus 59 ---------~~-~~~~Yg~Gs~~-G~~~~D~i~~g~------~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~ 121 (318)
T cd05477 59 ---------ET-FSLQYGSGSLT-GIFGYDTVTVQG------IIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAG 121 (318)
T ss_pred ---------cE-EEEEECCcEEE-EEEEeeEEEECC------EEEcCEEEEEEEecccccccccceeeEeecCccccccc
Confidence 23 99999999975 999999999998 7889999999987532 369999999863
Q ss_pred --CChhhhhcc----CCCceEEeccCccCCCCCCCCccEEEcccCcC-CCCCceeecCccCCCCCCceEEEeeEEEECCE
Q 037706 150 --LSVPSQLGF----LQKGFSHCFLAFKYANDPNISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNS 222 (394)
Q Consensus 150 --~S~~~ql~~----~~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~-~~~~~~~~p~~~~~~~~~~y~v~l~~i~v~~~ 222 (394)
.+++.||.. .+++||+||.+. .....|.|+|||+|++ +.+++.|+|+.. ..+|.|.+++|.|+++
T Consensus 122 ~~~~~~~~L~~~g~i~~~~FS~~L~~~----~~~~~g~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~ 193 (318)
T cd05477 122 GATTVMQGMMQQNLLQAPIFSFYLSGQ----QGQQGGELVFGGVDNNLYTGQIYWTPVTS----ETYWQIGIQGFQINGQ 193 (318)
T ss_pred CCCCHHHHHHhcCCcCCCEEEEEEcCC----CCCCCCEEEEcccCHHHcCCceEEEecCC----ceEEEEEeeEEEECCE
Confidence 456777765 368999999863 1235799999999988 588999999864 3589999999999998
Q ss_pred EeeeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCCCC
Q 037706 223 SLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLF 302 (394)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ 302 (394)
.+.+.. .+..+||||||++++||+++|++|++++.+.... ..+|..||.. ...+
T Consensus 194 -~~~~~~--------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~-------------~~~~~~~C~~----~~~~ 247 (318)
T cd05477 194 -ATGWCS--------QGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQ-------------YGQYVVNCNN----IQNL 247 (318)
T ss_pred -EecccC--------CCceeeECCCCccEECCHHHHHHHHHHhCCcccc-------------CCCEEEeCCc----cccC
Confidence 664321 1356999999999999999999999988544321 1234455531 2468
Q ss_pred CeEEEEEeCCeEEEecCCCeEEEecCCCCCCceEEE-EEEeCCCC--CCCCceeecccceeeeEEEEeCCCCEEEEecC
Q 037706 303 PSITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCL-LFQSMDDG--DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPM 378 (394)
Q Consensus 303 P~i~f~f~gg~~~~i~~~~y~~~~~~~~~~~~~~C~-~~~~~~~~--~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~~ 378 (394)
|+|+|+|. ++++.|++++|++.. ..+|+ ++++.... .+.+.||||+.|||++|+|||++++|||||++
T Consensus 248 p~l~~~f~-g~~~~v~~~~y~~~~-------~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 248 PTLTFTIN-GVSFPLPPSAYILQN-------NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred CcEEEEEC-CEEEEECHHHeEecC-------CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 99999994 699999999999753 34897 77654211 12247999999999999999999999999974
No 11
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.5e-47 Score=366.83 Aligned_cols=272 Identities=23% Similarity=0.376 Sum_probs=214.9
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCC---CCCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCc
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCM---DCDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLS 78 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~---~C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~ 78 (394)
|.|+|||||+++||+|. .|. .|.. ++.|+|++|+|++....
T Consensus 24 ~~v~~DTGSs~lWv~~~----~C~~~~~C~~------~~~y~~~~SsT~~~~~~-------------------------- 67 (317)
T cd06098 24 FTVIFDTGSSNLWVPSS----KCYFSIACYF------HSKYKSSKSSTYKKNGT-------------------------- 67 (317)
T ss_pred EEEEECCCccceEEecC----CCCCCccccc------cCcCCcccCCCcccCCC--------------------------
Confidence 78999999999999998 785 6874 58999999999875321
Q ss_pred ccCCCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCC------CCcceEeecCCCCCCh
Q 037706 79 TLLKSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTY------REPIGIAGFGRGALSV 152 (394)
Q Consensus 79 ~~~~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~------~~~dGIlGLg~~~~S~ 152 (394)
. +.+.|++|++. |.+++|+|+|++ .+++++.||+++.+. ...|||||||+...+.
T Consensus 68 -----------~-~~i~Yg~G~~~-G~~~~D~v~ig~------~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~ 128 (317)
T cd06098 68 -----------S-ASIQYGTGSIS-GFFSQDSVTVGD------LVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISV 128 (317)
T ss_pred -----------E-EEEEcCCceEE-EEEEeeEEEECC------EEECCEEEEEEEecCCccccccccceeccccccchhh
Confidence 2 89999999975 999999999998 788999999987643 2479999999976553
Q ss_pred ------hhhhcc----CCCceEEeccCccCCCCCCCCccEEEcccCcC-CCCCceeecCccCCCCCCceEEEeeEEEECC
Q 037706 153 ------PSQLGF----LQKGFSHCFLAFKYANDPNISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGN 221 (394)
Q Consensus 153 ------~~ql~~----~~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~-~~~~~~~~p~~~~~~~~~~y~v~l~~i~v~~ 221 (394)
..+|.. .+++||+||.+.. .....|.|+|||+|++ +.+++.|+|+.. ..+|.|.+++|+|++
T Consensus 129 ~~~~~~~~~l~~qg~i~~~~FS~~L~~~~---~~~~~G~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g 201 (317)
T cd06098 129 GKAVPVWYNMVEQGLVKEPVFSFWLNRNP---DEEEGGELVFGGVDPKHFKGEHTYVPVTR----KGYWQFEMGDVLIGG 201 (317)
T ss_pred cCCCCHHHHHHhcCCCCCCEEEEEEecCC---CCCCCcEEEECccChhhcccceEEEecCc----CcEEEEEeCeEEECC
Confidence 233332 2579999998631 1235799999999988 589999999964 358999999999999
Q ss_pred EEeeeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCCC
Q 037706 222 SSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDL 301 (394)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~ 301 (394)
+ .+.... ....+||||||++++||++++++|. . ...|+.. ..
T Consensus 202 ~-~~~~~~--------~~~~aivDTGTs~~~lP~~~~~~i~-------~-------------~~~C~~~---------~~ 243 (317)
T cd06098 202 K-STGFCA--------GGCAAIADSGTSLLAGPTTIVTQIN-------S-------------AVDCNSL---------SS 243 (317)
T ss_pred E-EeeecC--------CCcEEEEecCCcceeCCHHHHHhhh-------c-------------cCCcccc---------cc
Confidence 8 765432 1356999999999999998776543 0 1256644 45
Q ss_pred CCeEEEEEeCCeEEEecCCCeEEEecCCCCCCceEEE-EEEeCCCC-CCCCceeecccceeeeEEEEeCCCCEEEEec
Q 037706 302 FPSITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCL-LFQSMDDG-DYGPSGVFGSFQQQNVEVVYDLEKERIGFQP 377 (394)
Q Consensus 302 ~P~i~f~f~gg~~~~i~~~~y~~~~~~~~~~~~~~C~-~~~~~~~~-~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~ 377 (394)
+|+|+|+| +|+.|+|+|++|+++.... ....|+ +++..+.. ..++.||||++|||++|+|||++|+|||||+
T Consensus 244 ~P~i~f~f-~g~~~~l~~~~yi~~~~~~---~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 244 MPNVSFTI-GGKTFELTPEQYILKVGEG---AAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCcEEEEE-CCEEEEEChHHeEEeecCC---CCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 89999999 5799999999999876421 246898 67654321 1235799999999999999999999999995
No 12
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=4.2e-47 Score=370.60 Aligned_cols=309 Identities=17% Similarity=0.245 Sum_probs=220.7
Q ss_pred CEEEEEEcCCcceeEcCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCccc
Q 037706 1 VIQVYMDTGSDLTWVPCGNLSFDCMDCDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLSTL 80 (394)
Q Consensus 1 ~f~v~iDTGS~~~Wv~~~~~~~~C~~C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~~ 80 (394)
.|.|+|||||+++||+|. .|..| ++.|+|++|+|++...|
T Consensus 16 ~~~v~~DTGSs~lWv~~~----~~~~~--------~~~f~~~~SsT~~~~~~---------------------------- 55 (364)
T cd05473 16 KLNILVDTGSSNFAVAAA----PHPFI--------HTYFHRELSSTYRDLGK---------------------------- 55 (364)
T ss_pred eEEEEEecCCcceEEEcC----CCccc--------cccCCchhCcCcccCCc----------------------------
Confidence 389999999999999998 66322 57899999999986543
Q ss_pred CCCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCC------CCcceEeecCCCCCC---
Q 037706 81 LKSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTY------REPIGIAGFGRGALS--- 151 (394)
Q Consensus 81 ~~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~------~~~dGIlGLg~~~~S--- 151 (394)
. |.++|++|++. |.+++|+|+|++... ..+ .+.|+++.... ...|||||||+..++
T Consensus 56 ---------~-~~i~Yg~Gs~~-G~~~~D~v~ig~~~~---~~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~ 120 (364)
T cd05473 56 ---------G-VTVPYTQGSWE-GELGTDLVSIPKGPN---VTF-RANIAAITESENFFLNGSNWEGILGLAYAELARPD 120 (364)
T ss_pred ---------e-EEEEECcceEE-EEEEEEEEEECCCCc---cce-EEeeEEEeccccceecccccceeeeecccccccCC
Confidence 2 99999999875 999999999986211 222 13345554322 146999999998653
Q ss_pred -----hhhhhcc---CCCceEEeccCccCC--C--CCCCCccEEEcccCcC-CCCCceeecCccCCCCCCceEEEeeEEE
Q 037706 152 -----VPSQLGF---LQKGFSHCFLAFKYA--N--DPNISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAIT 218 (394)
Q Consensus 152 -----~~~ql~~---~~~~Fs~~l~~~~~~--~--~~~~~G~l~fGg~d~~-~~~~~~~~p~~~~~~~~~~y~v~l~~i~ 218 (394)
+..+|.. ++++||++|...... . .....|.|+|||+|+. +.+++.|+|++. ..+|.|.+++|.
T Consensus 121 ~~~~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~----~~~~~v~l~~i~ 196 (364)
T cd05473 121 SSVEPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE----EWYYEVIILKLE 196 (364)
T ss_pred CCCCCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc----ceeEEEEEEEEE
Confidence 2223332 467999988542111 0 1235799999999987 488999999974 348999999999
Q ss_pred ECCEEeeeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccc-cCCCCccCCCCCCCCC
Q 037706 219 IGNSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEER-TGFDLCYRVPCPNNTF 297 (394)
Q Consensus 219 v~~~~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~-~~~~~C~~~~~~~~~~ 297 (394)
|+++ .+.++...+. ...+||||||++++||+++|++|++++.++... ...+. ... .....|+.... .
T Consensus 197 vg~~-~~~~~~~~~~-----~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~-~~~~~-~~~~~~~~~C~~~~~----~ 264 (364)
T cd05473 197 VGGQ-SLNLDCKEYN-----YDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLI-EDFPD-GFWLGSQLACWQKGT----T 264 (364)
T ss_pred ECCE-eccccccccc-----CccEEEeCCCcceeCCHHHHHHHHHHHHhhccc-ccCCc-cccCcceeecccccC----c
Confidence 9998 7765432211 236999999999999999999999999887531 11110 000 01135765411 1
Q ss_pred CCCCCCeEEEEEeCC-----eEEEecCCCeEEEecCCCCCCceEEEEEEeCCCCCCCCceeecccceeeeEEEEeCCCCE
Q 037706 298 TDDLFPSITFHFLNN-----VSLVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKER 372 (394)
Q Consensus 298 ~~~~~P~i~f~f~gg-----~~~~i~~~~y~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~r 372 (394)
....+|+|+|+|+|. ..++|+|++|+....... ....|+++..... .+.||||++|||++|+|||++++|
T Consensus 265 ~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~~~~~~--~~~~C~~~~~~~~---~~~~ILG~~flr~~yvvfD~~~~r 339 (364)
T cd05473 265 PWEIFPKISIYLRDENSSQSFRITILPQLYLRPVEDHG--TQLDCYKFAISQS---TNGTVIGAVIMEGFYVVFDRANKR 339 (364)
T ss_pred hHhhCCcEEEEEccCCCCceEEEEECHHHhhhhhccCC--CcceeeEEeeecC---CCceEEeeeeEcceEEEEECCCCE
Confidence 124699999999752 478999999997543211 2468986543221 136999999999999999999999
Q ss_pred EEEecCCCcchhh
Q 037706 373 IGFQPMDCASTAS 385 (394)
Q Consensus 373 iGfa~~~c~~~~~ 385 (394)
||||+++|..++-
T Consensus 340 IGfa~~~C~~~~~ 352 (364)
T cd05473 340 VGFAVSTCAEHDG 352 (364)
T ss_pred EeeEecccccccC
Confidence 9999999988653
No 13
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=5.7e-47 Score=364.39 Aligned_cols=286 Identities=23% Similarity=0.343 Sum_probs=218.8
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCcccC
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCMDCDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLSTLL 81 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~~C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~~~ 81 (394)
|+|+|||||+++||++. .|..|... +..++.|+|++|+|++...|
T Consensus 22 ~~v~~DTGSs~~Wv~~~----~C~~~~~~--c~~~~~y~~~~SsT~~~~~~----------------------------- 66 (326)
T cd05487 22 FKVVFDTGSSNLWVPSS----KCSPLYTA--CVTHNLYDASDSSTYKENGT----------------------------- 66 (326)
T ss_pred EEEEEeCCccceEEccC----CCcCcchh--hcccCcCCCCCCeeeeECCE-----------------------------
Confidence 78999999999999988 67642111 11368999999999986432
Q ss_pred CCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCC------CCcceEeecCCCCCC----
Q 037706 82 KSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTY------REPIGIAGFGRGALS---- 151 (394)
Q Consensus 82 ~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~------~~~dGIlGLg~~~~S---- 151 (394)
. |.+.|++|++ +|.+++|+|+|++ +.+ ++.||++.... ...|||||||++..+
T Consensus 67 --------~-~~~~Yg~g~~-~G~~~~D~v~~g~------~~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~ 129 (326)
T cd05487 67 --------E-FTIHYASGTV-KGFLSQDIVTVGG------IPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGV 129 (326)
T ss_pred --------E-EEEEeCCceE-EEEEeeeEEEECC------EEe-eEEEEEEEeccCCccceeecceEEecCChhhcccCC
Confidence 2 9999999985 5999999999998 566 47899987642 247999999987654
Q ss_pred --hhhhhcc----CCCceEEeccCccCCCCCCCCccEEEcccCcC-CCCCceeecCccCCCCCCceEEEeeEEEECCEEe
Q 037706 152 --VPSQLGF----LQKGFSHCFLAFKYANDPNISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSL 224 (394)
Q Consensus 152 --~~~ql~~----~~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~-~~~~~~~~p~~~~~~~~~~y~v~l~~i~v~~~~~ 224 (394)
+..+|.. .+++||+||.+.. .....|+|+|||+|++ +.+++.|+|+.. +.+|.|.+++|.|+++ .
T Consensus 130 ~~~~~~L~~qg~i~~~~FS~~L~~~~---~~~~~G~l~fGg~d~~~y~g~l~~~~~~~----~~~w~v~l~~i~vg~~-~ 201 (326)
T cd05487 130 TPVFDNIMSQGVLKEDVFSVYYSRDS---SHSLGGEIVLGGSDPQHYQGDFHYINTSK----TGFWQIQMKGVSVGSS-T 201 (326)
T ss_pred CCHHHHHHhcCCCCCCEEEEEEeCCC---CCCCCcEEEECCcChhhccCceEEEECCc----CceEEEEecEEEECCE-E
Confidence 2333332 3689999998641 1245799999999988 489999999854 3589999999999998 6
Q ss_pred eeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCCCCCe
Q 037706 225 TEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFPS 304 (394)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~ 304 (394)
+.... +..+||||||++++||+++|++|++++.+... ...|..||.. ...+|+
T Consensus 202 ~~~~~---------~~~aiiDSGts~~~lP~~~~~~l~~~~~~~~~--------------~~~y~~~C~~----~~~~P~ 254 (326)
T cd05487 202 LLCED---------GCTAVVDTGASFISGPTSSISKLMEALGAKER--------------LGDYVVKCNE----VPTLPD 254 (326)
T ss_pred EecCC---------CCEEEECCCccchhCcHHHHHHHHHHhCCccc--------------CCCEEEeccc----cCCCCC
Confidence 64431 35699999999999999999999888753211 1223444421 246899
Q ss_pred EEEEEeCCeEEEecCCCeEEEecCCCCCCceEEE-EEEeCCCC-CCCCceeecccceeeeEEEEeCCCCEEEEecC
Q 037706 305 ITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCL-LFQSMDDG-DYGPSGVFGSFQQQNVEVVYDLEKERIGFQPM 378 (394)
Q Consensus 305 i~f~f~gg~~~~i~~~~y~~~~~~~~~~~~~~C~-~~~~~~~~-~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~~ 378 (394)
|+|+| |+..++|++++|+++.... ....|+ +|+..+.. ..++.||||++|||++|+|||++++|||||++
T Consensus 255 i~f~f-gg~~~~v~~~~yi~~~~~~---~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 255 ISFHL-GGKEYTLSSSDYVLQDSDF---SDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred EEEEE-CCEEEEeCHHHhEEeccCC---CCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 99999 5799999999999875421 346898 77754321 12347999999999999999999999999974
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=7.1e-47 Score=363.95 Aligned_cols=282 Identities=24% Similarity=0.378 Sum_probs=220.4
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCC----CCCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCC
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCM----DCDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSL 77 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~----~C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~ 77 (394)
|+|+|||||+++||+|. .|. .|. .++.|+|++|+|++...|
T Consensus 25 ~~v~~DTGSs~~Wv~~~----~C~~~~~~c~------~~~~y~~~~Sst~~~~~~------------------------- 69 (329)
T cd05485 25 FKVVFDTGSSNLWVPSK----KCSWTNIACL------LHNKYDSTKSSTYKKNGT------------------------- 69 (329)
T ss_pred EEEEEcCCCccEEEecC----CCCCCCcccc------CCCeECCcCCCCeEECCe-------------------------
Confidence 78999999999999998 787 354 357899999999875432
Q ss_pred cccCCCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCCC------CcceEeecCCCCCC
Q 037706 78 STLLKSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTYR------EPIGIAGFGRGALS 151 (394)
Q Consensus 78 ~~~~~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~~------~~dGIlGLg~~~~S 151 (394)
. |.+.|++|++ .|.+++|+|+|++ ..++++.|||+..+.+ ..+||||||+...|
T Consensus 70 ------------~-~~i~Y~~g~~-~G~~~~D~v~ig~------~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s 129 (329)
T cd05485 70 ------------E-FAIQYGSGSL-SGFLSTDTVSVGG------VSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSIS 129 (329)
T ss_pred ------------E-EEEEECCceE-EEEEecCcEEECC------EEECCEEEEEEEecCCccccccccceEEEcCCcccc
Confidence 2 9999999986 5999999999998 7888999999876432 36999999998765
Q ss_pred h------hhhhcc----CCCceEEeccCccCCCCCCCCccEEEcccCcC-CCCCceeecCccCCCCCCceEEEeeEEEEC
Q 037706 152 V------PSQLGF----LQKGFSHCFLAFKYANDPNISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIG 220 (394)
Q Consensus 152 ~------~~ql~~----~~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~-~~~~~~~~p~~~~~~~~~~y~v~l~~i~v~ 220 (394)
. ..||.. .+++||+||.+.. .....|+|+|||+|++ +.+++.|+|+.. +.+|.|.+++|.|+
T Consensus 130 ~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~---~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~~~~i~v~ 202 (329)
T cd05485 130 VDGVVPVFYNMVNQKLVDAPVFSFYLNRDP---SAKEGGELILGGSDPKHYTGNFTYLPVTR----KGYWQFKMDSVSVG 202 (329)
T ss_pred ccCCCCHHHHHHhCCCCCCCEEEEEecCCC---CCCCCcEEEEcccCHHHcccceEEEEcCC----ceEEEEEeeEEEEC
Confidence 3 345543 2589999998642 1235799999999987 478999999864 35899999999999
Q ss_pred CEEeeeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCC
Q 037706 221 NSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDD 300 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 300 (394)
++ .+.. ....+||||||++++||+++|++|.+++.+... . ..+|..+|.. ..
T Consensus 203 ~~-~~~~----------~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~--------~-----~~~~~~~C~~----~~ 254 (329)
T cd05485 203 EG-EFCS----------GGCQAIADTGTSLIAGPVDEIEKLNNAIGAKPI--------I-----GGEYMVNCSA----IP 254 (329)
T ss_pred Ce-eecC----------CCcEEEEccCCcceeCCHHHHHHHHHHhCCccc--------c-----CCcEEEeccc----cc
Confidence 98 6531 135699999999999999999999887753211 0 1234445521 24
Q ss_pred CCCeEEEEEeCCeEEEecCCCeEEEecCCCCCCceEEE-EEEeCCCC-CCCCceeecccceeeeEEEEeCCCCEEEEec
Q 037706 301 LFPSITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCL-LFQSMDDG-DYGPSGVFGSFQQQNVEVVYDLEKERIGFQP 377 (394)
Q Consensus 301 ~~P~i~f~f~gg~~~~i~~~~y~~~~~~~~~~~~~~C~-~~~~~~~~-~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~ 377 (394)
.+|+|+|+| |++.+.|+|++|+++.... ...+|+ +++..... ..++.||||+.|||++|+|||++++|||||.
T Consensus 255 ~~p~i~f~f-gg~~~~i~~~~yi~~~~~~---~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 255 SLPDITFVL-GGKSFSLTGKDYVLKVTQM---GQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred cCCcEEEEE-CCEEeEEChHHeEEEecCC---CCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 689999999 5799999999999986432 246899 67754211 1234799999999999999999999999984
No 15
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=8.5e-47 Score=362.25 Aligned_cols=276 Identities=26% Similarity=0.405 Sum_probs=217.9
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCC--CCCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCcc
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCM--DCDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLST 79 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~--~C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~ 79 (394)
|.|+|||||+++||+|. .|. .|.. ++.|+|++|+|++...
T Consensus 24 ~~v~~DTGSs~~wv~~~----~C~~~~C~~------~~~y~~~~Sst~~~~~---------------------------- 65 (320)
T cd05488 24 FKVILDTGSSNLWVPSV----KCGSIACFL------HSKYDSSASSTYKANG---------------------------- 65 (320)
T ss_pred EEEEEecCCcceEEEcC----CCCCcccCC------cceECCCCCcceeeCC----------------------------
Confidence 78999999999999999 786 4764 5799999999987432
Q ss_pred cCCCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCCC------CcceEeecCCCCCChh
Q 037706 80 LLKSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTYR------EPIGIAGFGRGALSVP 153 (394)
Q Consensus 80 ~~~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~~------~~dGIlGLg~~~~S~~ 153 (394)
|. |.+.|++|++ +|.+++|+|+|++ +.++++.|||+....+ ..|||||||++..+..
T Consensus 66 ---------~~-~~~~y~~g~~-~G~~~~D~v~ig~------~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~ 128 (320)
T cd05488 66 ---------TE-FKIQYGSGSL-EGFVSQDTLSIGD------LTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVN 128 (320)
T ss_pred ---------CE-EEEEECCceE-EEEEEEeEEEECC------EEECCEEEEEEecCCCcceeeeeeceEEecCCcccccc
Confidence 33 9999999986 5999999999998 7888999999986542 3699999999876654
Q ss_pred hh------hcc----CCCceEEeccCccCCCCCCCCccEEEcccCcC-CCCCceeecCccCCCCCCceEEEeeEEEECCE
Q 037706 154 SQ------LGF----LQKGFSHCFLAFKYANDPNISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNS 222 (394)
Q Consensus 154 ~q------l~~----~~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~-~~~~~~~~p~~~~~~~~~~y~v~l~~i~v~~~ 222 (394)
.+ |.. .+++||+||.+. ....|.|+|||+|+. +.+++.|+|++. ..+|.|.+++|+|+++
T Consensus 129 ~~~~~~~~l~~qg~i~~~~FS~~L~~~-----~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~ 199 (320)
T cd05488 129 KIVPPFYNMINQGLLDEPVFSFYLGSS-----EEDGGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLGDE 199 (320)
T ss_pred CCCCHHHHHHhcCCCCCCEEEEEecCC-----CCCCcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEECCE
Confidence 32 222 268999999974 235799999999987 488999999974 3589999999999998
Q ss_pred EeeeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCCCC
Q 037706 223 SLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLF 302 (394)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ 302 (394)
.+... +..+||||||++++||++++++|.+++.+... ...+|..||.. ...+
T Consensus 200 -~~~~~----------~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~~-------------~~~~~~~~C~~----~~~~ 251 (320)
T cd05488 200 -ELELE----------NTGAAIDTGTSLIALPSDLAEMLNAEIGAKKS-------------WNGQYTVDCSK----VDSL 251 (320)
T ss_pred -EeccC----------CCeEEEcCCcccccCCHHHHHHHHHHhCCccc-------------cCCcEEeeccc----cccC
Confidence 76543 24699999999999999999999887743211 12334444421 2468
Q ss_pred CeEEEEEeCCeEEEecCCCeEEEecCCCCCCceEEE-EEEeCCCC-CCCCceeecccceeeeEEEEeCCCCEEEEec
Q 037706 303 PSITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCL-LFQSMDDG-DYGPSGVFGSFQQQNVEVVYDLEKERIGFQP 377 (394)
Q Consensus 303 P~i~f~f~gg~~~~i~~~~y~~~~~~~~~~~~~~C~-~~~~~~~~-~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~ 377 (394)
|.|+|+|. |++++|+|++|+++. ...|+ .+...... ..++.||||++|||++|+|||.+++|||||+
T Consensus 252 P~i~f~f~-g~~~~i~~~~y~~~~-------~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 252 PDLTFNFD-GYNFTLGPFDYTLEV-------SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCEEEEEC-CEEEEECHHHheecC-------CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 99999994 799999999999743 24799 45443211 1234799999999999999999999999985
No 16
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=4.6e-46 Score=347.89 Aligned_cols=229 Identities=41% Similarity=0.766 Sum_probs=191.1
Q ss_pred cEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCC----CCcceEeecCCCCCChhhhhccCCCceEEec
Q 037706 92 FAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTY----REPIGIAGFGRGALSVPSQLGFLQKGFSHCF 167 (394)
Q Consensus 92 ~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~----~~~dGIlGLg~~~~S~~~ql~~~~~~Fs~~l 167 (394)
|.++|++|+.++|++++|+|+|++.. .+++++.|||+..+. ...+||||||+...|++.||....++||+||
T Consensus 33 ~~~~Y~dg~~~~G~~~~D~v~~g~~~----~~~~~~~Fg~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~~Fs~~l 108 (265)
T cd05476 33 YEYSYGDGSSTSGVLATETFTFGDSS----VSVPNVAFGCGTDNEGGSFGGADGILGLGRGPLSLVSQLGSTGNKFSYCL 108 (265)
T ss_pred eEeEeCCCceeeeeEEEEEEEecCCC----CccCCEEEEecccccCCccCCCCEEEECCCCcccHHHHhhcccCeeEEEc
Confidence 88999999888899999999999821 178899999999764 3589999999999999999987236999999
Q ss_pred cCccCCCCCCCCccEEEcccCcCCCCCceeecCccCCCCCCceEEEeeEEEECCEEeeeecCcceeccCCCCCceEEccc
Q 037706 168 LAFKYANDPNISSPLVIGDVAISSKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFDSQGNGGLLVDSG 247 (394)
Q Consensus 168 ~~~~~~~~~~~~G~l~fGg~d~~~~~~~~~~p~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~iiDSG 247 (394)
.+.. +....|+|+||++|+.+.+++.|+|++.++..+.+|.|.+++|+|+++ .+.++...+.........+|||||
T Consensus 109 ~~~~---~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~-~~~~~~~~~~~~~~~~~~ai~DTG 184 (265)
T cd05476 109 VPHD---DTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGK-RLPIPPSVFAIDSDGSGGTIIDSG 184 (265)
T ss_pred cCCC---CCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCE-EecCCchhcccccCCCCcEEEeCC
Confidence 8731 134689999999998888999999998765445689999999999999 876543332222234578999999
Q ss_pred CceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCCCCCeEEEEEeCCeEEEecCCCeEEEec
Q 037706 248 TTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFPSITFHFLNNVSLVLPQGNHFYAMS 327 (394)
Q Consensus 248 Ttl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~y~~~~~ 327 (394)
|++++||+++| |+|+|+|+|+..|.|++++|++...
T Consensus 185 Ts~~~lp~~~~--------------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~ 220 (265)
T cd05476 185 TTLTYLPDPAY--------------------------------------------PDLTLHFDGGADLELPPENYFVDVG 220 (265)
T ss_pred CcceEcCcccc--------------------------------------------CCEEEEECCCCEEEeCcccEEEECC
Confidence 99999998876 6799999767999999999998543
Q ss_pred CCCCCCceEEEEEEeCCCCCCCCceeecccceeeeEEEEeCCCCEEEEecCCC
Q 037706 328 APSNSSAVKCLLFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDC 380 (394)
Q Consensus 328 ~~~~~~~~~C~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~~~c 380 (394)
.+..|++++.... .+.||||++|||++|+|||++++|||||+++|
T Consensus 221 -----~~~~C~~~~~~~~---~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 221 -----EGVVCLAILSSSS---GGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred -----CCCEEEEEecCCC---CCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 3569998886632 25799999999999999999999999999999
No 17
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.3e-45 Score=346.30 Aligned_cols=219 Identities=27% Similarity=0.489 Sum_probs=178.3
Q ss_pred cEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCC-------CCcceEeecCCCCCChhhhhcc---CCC
Q 037706 92 FAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTY-------REPIGIAGFGRGALSVPSQLGF---LQK 161 (394)
Q Consensus 92 ~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~-------~~~dGIlGLg~~~~S~~~ql~~---~~~ 161 (394)
|.++|++|+.++|.+++|+|+|+..++. ..+.++.|||+..+. ...|||||||++..|++.||.. +++
T Consensus 42 ~~i~Ygd~~~~~G~~~~D~v~~~~~~~~--~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~ 119 (273)
T cd05475 42 YEIEYADGGSSMGVLVTDIFSLKLTNGS--RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKN 119 (273)
T ss_pred cEeEeCCCCceEEEEEEEEEEEeecCCC--cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCc
Confidence 9999998887789999999999764332 467789999997542 2479999999999999999985 578
Q ss_pred ceEEeccCccCCCCCCCCccEEEcccCcCCCCCceeecCccCCCCCCceEEEeeEEEECCEEeeeecCcceeccCCCCCc
Q 037706 162 GFSHCFLAFKYANDPNISSPLVIGDVAISSKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSSLTEVPLSLREFDSQGNGG 241 (394)
Q Consensus 162 ~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~~~~~~~~~p~~~~~~~~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~ 241 (394)
+||+||.+ ..+|.|+||+. ..+.+++.|+|+..++. +.+|.|.+.+|+|+++ .+.. +...
T Consensus 120 ~Fs~~l~~-------~~~g~l~~G~~-~~~~g~i~ytpl~~~~~-~~~y~v~l~~i~vg~~-~~~~----------~~~~ 179 (273)
T cd05475 120 VIGHCLSS-------NGGGFLFFGDD-LVPSSGVTWTPMRRESQ-KKHYSPGPASLLFNGQ-PTGG----------KGLE 179 (273)
T ss_pred eEEEEccC-------CCCeEEEECCC-CCCCCCeeecccccCCC-CCeEEEeEeEEEECCE-ECcC----------CCce
Confidence 99999985 24699999943 23467899999987642 4589999999999998 5421 2457
Q ss_pred eEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCCCCCeEEEEEeCC---eEEEec
Q 037706 242 LLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFPSITFHFLNN---VSLVLP 318 (394)
Q Consensus 242 ~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg---~~~~i~ 318 (394)
+||||||++++||+++| +|+|+|+|++. +.|+|+
T Consensus 180 ~ivDTGTt~t~lp~~~y-------------------------------------------~p~i~~~f~~~~~~~~~~l~ 216 (273)
T cd05475 180 VVFDSGSSYTYFNAQAY-------------------------------------------FKPLTLKFGKGWRTRLLEIP 216 (273)
T ss_pred EEEECCCceEEcCCccc-------------------------------------------cccEEEEECCCCceeEEEeC
Confidence 99999999999999876 37899999654 799999
Q ss_pred CCCeEEEecCCCCCCceEEEEEEeCCCCCCCCceeecccceeeeEEEEeCCCCEEEEecCCC
Q 037706 319 QGNHFYAMSAPSNSSAVKCLLFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMDC 380 (394)
Q Consensus 319 ~~~y~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~~~c 380 (394)
|++|++... .+..|++++.......++.||||+.|||++|+|||++++|||||+++|
T Consensus 217 ~~~y~~~~~-----~~~~Cl~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 217 PENYLIISE-----KGNVCLGILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred CCceEEEcC-----CCCEEEEEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 999998643 245899887554322235799999999999999999999999999998
No 18
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=5.6e-46 Score=367.65 Aligned_cols=276 Identities=21% Similarity=0.361 Sum_probs=212.8
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCC--CCCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCcc
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCM--DCDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLST 79 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~--~C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~ 79 (394)
|.|+|||||+++||+|. .|. .|.. ++.|+|++|+|++...|
T Consensus 153 f~Vi~DTGSsdlWVps~----~C~~~~C~~------~~~yd~s~SsT~~~~~~--------------------------- 195 (453)
T PTZ00147 153 FNFIFDTGSANLWVPSI----KCTTEGCET------KNLYDSSKSKTYEKDGT--------------------------- 195 (453)
T ss_pred EEEEEeCCCCcEEEeec----CCCcccccC------CCccCCccCcceEECCC---------------------------
Confidence 78999999999999998 787 4653 68999999999875442
Q ss_pred cCCCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCC--------CCcceEeecCCCCCC
Q 037706 80 LLKSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTY--------REPIGIAGFGRGALS 151 (394)
Q Consensus 80 ~~~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~--------~~~dGIlGLg~~~~S 151 (394)
. |.+.|++|++. |.+++|+|+|++ ++++ ..|+++.... ...|||||||++..|
T Consensus 196 ----------~-f~i~Yg~Gsvs-G~~~~DtVtiG~------~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S 256 (453)
T PTZ00147 196 ----------K-VEMNYVSGTVS-GFFSKDLVTIGN------LSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLS 256 (453)
T ss_pred ----------E-EEEEeCCCCEE-EEEEEEEEEECC------EEEE-EEEEEEEeccCcccccccccccceecccCCccc
Confidence 2 99999999865 999999999998 6776 5788876532 247999999998765
Q ss_pred h------hhhhcc----CCCceEEeccCccCCCCCCCCccEEEcccCcC-CCCCceeecCccCCCCCCceEEEeeEEEEC
Q 037706 152 V------PSQLGF----LQKGFSHCFLAFKYANDPNISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIG 220 (394)
Q Consensus 152 ~------~~ql~~----~~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~-~~~~~~~~p~~~~~~~~~~y~v~l~~i~v~ 220 (394)
. +.+|.. .+++||+||++. ....|.|+|||+|+. +.+++.|+|+.. +.+|.|.++ +.++
T Consensus 257 ~~~~~p~~~~L~~qg~I~~~vFS~~L~~~-----~~~~G~L~fGGiD~~ky~G~l~y~pl~~----~~~W~V~l~-~~vg 326 (453)
T PTZ00147 257 IGSVDPYVVELKNQNKIEQAVFTFYLPPE-----DKHKGYLTIGGIEERFYEGPLTYEKLNH----DLYWQVDLD-VHFG 326 (453)
T ss_pred cccCCCHHHHHHHcCCCCccEEEEEecCC-----CCCCeEEEECCcChhhcCCceEEEEcCC----CceEEEEEE-EEEC
Confidence 3 335443 357999999863 235799999999988 489999999953 358999998 4777
Q ss_pred CEEeeeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCC
Q 037706 221 NSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDD 300 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 300 (394)
+. .. ....+||||||+++++|++++++|.+++.+... ... . .....|+. .
T Consensus 327 ~~-~~------------~~~~aIiDSGTsli~lP~~~~~ai~~~l~~~~~--~~~---~--~y~~~C~~----------~ 376 (453)
T PTZ00147 327 NV-SS------------EKANVIVDSGTSVITVPTEFLNKFVESLDVFKV--PFL---P--LYVTTCNN----------T 376 (453)
T ss_pred CE-ec------------CceeEEECCCCchhcCCHHHHHHHHHHhCCeec--CCC---C--eEEEeCCC----------C
Confidence 65 32 135699999999999999999999988743211 000 0 01123442 3
Q ss_pred CCCeEEEEEeCCeEEEecCCCeEEEecCCCCCCceEEE-EEEeCCCCCCCCceeecccceeeeEEEEeCCCCEEEEecCC
Q 037706 301 LFPSITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCL-LFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMD 379 (394)
Q Consensus 301 ~~P~i~f~f~gg~~~~i~~~~y~~~~~~~~~~~~~~C~-~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~~~ 379 (394)
.+|+|+|+|. |..++|+|++|+.+..+. ....|+ +++..+.. .+.||||++|||++|+|||.+++|||||+++
T Consensus 377 ~lP~~~f~f~-g~~~~L~p~~yi~~~~~~---~~~~C~~~i~~~~~~--~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 377 KLPTLEFRSP-NKVYTLEPEYYLQPIEDI---GSALCMLNIIPIDLE--KNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred CCCeEEEEEC-CEEEEECHHHheeccccC---CCcEEEEEEEECCCC--CCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 5799999995 699999999999754321 345898 67765432 2479999999999999999999999999976
No 19
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=1.6e-45 Score=363.73 Aligned_cols=276 Identities=23% Similarity=0.379 Sum_probs=211.7
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCC--CCCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCcc
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCM--DCDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLST 79 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~--~C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~ 79 (394)
|.|+|||||+++||+|. .|. .|.. ++.|+|++|+|++...|
T Consensus 152 f~vi~DTGSsdlWV~s~----~C~~~~C~~------~~~yd~s~SsT~~~~~~--------------------------- 194 (450)
T PTZ00013 152 FMLIFDTGSANLWVPSK----KCDSIGCSI------KNLYDSSKSKSYEKDGT--------------------------- 194 (450)
T ss_pred EEEEEeCCCCceEEecc----cCCcccccc------CCCccCccCcccccCCc---------------------------
Confidence 78999999999999999 786 5764 58999999999975432
Q ss_pred cCCCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCC--------CCcceEeecCCCCCC
Q 037706 80 LLKSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTY--------REPIGIAGFGRGALS 151 (394)
Q Consensus 80 ~~~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~--------~~~dGIlGLg~~~~S 151 (394)
. |.+.||+|++ +|.+++|+|+|++ ++++ ..|+++.... ...|||||||+..++
T Consensus 195 ----------~-~~i~YG~Gsv-~G~~~~Dtv~iG~------~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s 255 (450)
T PTZ00013 195 ----------K-VDITYGSGTV-KGFFSKDLVTLGH------LSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLS 255 (450)
T ss_pred ----------E-EEEEECCceE-EEEEEEEEEEECC------EEEc-cEEEEEEeccccccceecccccceecccCCccc
Confidence 2 9999999985 5999999999998 6776 5788876432 247999999998654
Q ss_pred ------hhhhhcc----CCCceEEeccCccCCCCCCCCccEEEcccCcC-CCCCceeecCccCCCCCCceEEEeeEEEEC
Q 037706 152 ------VPSQLGF----LQKGFSHCFLAFKYANDPNISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIG 220 (394)
Q Consensus 152 ------~~~ql~~----~~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~-~~~~~~~~p~~~~~~~~~~y~v~l~~i~v~ 220 (394)
++.+|.. .+++||+||++. ....|.|+|||+|++ +.+++.|+|+.. +.+|.|.++ +.++
T Consensus 256 ~~~~~p~~~~L~~qg~I~~~vFS~~L~~~-----~~~~G~L~fGGiD~~~y~G~L~y~pv~~----~~yW~I~l~-v~~G 325 (450)
T PTZ00013 256 IGSIDPIVVELKNQNKIDNALFTFYLPVH-----DVHAGYLTIGGIEEKFYEGNITYEKLNH----DLYWQIDLD-VHFG 325 (450)
T ss_pred cccCCCHHHHHHhccCcCCcEEEEEecCC-----CCCCCEEEECCcCccccccceEEEEcCc----CceEEEEEE-EEEC
Confidence 3455543 357899999863 235799999999988 489999999953 358999998 6666
Q ss_pred CEEeeeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCC
Q 037706 221 NSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDD 300 (394)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~ 300 (394)
.. ... ...+||||||+++++|+++++++.+++..... +. ...|..+|. ..
T Consensus 326 ~~-~~~------------~~~aIlDSGTSli~lP~~~~~~i~~~l~~~~~-----~~-------~~~y~~~C~-----~~ 375 (450)
T PTZ00013 326 KQ-TMQ------------KANVIVDSGTTTITAPSEFLNKFFANLNVIKV-----PF-------LPFYVTTCD-----NK 375 (450)
T ss_pred ce-ecc------------ccceEECCCCccccCCHHHHHHHHHHhCCeec-----CC-------CCeEEeecC-----CC
Confidence 54 321 24699999999999999999988887643211 00 011233342 13
Q ss_pred CCCeEEEEEeCCeEEEecCCCeEEEecCCCCCCceEEE-EEEeCCCCCCCCceeecccceeeeEEEEeCCCCEEEEecCC
Q 037706 301 LFPSITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCL-LFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERIGFQPMD 379 (394)
Q Consensus 301 ~~P~i~f~f~gg~~~~i~~~~y~~~~~~~~~~~~~~C~-~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~~~ 379 (394)
.+|+|+|+|. |..++|+|++|+.+.... .+..|+ ++++.+.. .+.||||++|||++|+|||.+++|||||+++
T Consensus 376 ~lP~i~F~~~-g~~~~L~p~~Yi~~~~~~---~~~~C~~~i~~~~~~--~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 376 EMPTLEFKSA-NNTYTLEPEYYMNPLLDV---DDTLCMITMLPVDID--DNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred CCCeEEEEEC-CEEEEECHHHheehhccC---CCCeeEEEEEECCCC--CCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 5799999995 699999999999754321 245898 76654322 2479999999999999999999999999865
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=5.1e-44 Score=336.46 Aligned_cols=247 Identities=20% Similarity=0.324 Sum_probs=198.2
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCcccC
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCMDCDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLSTLL 81 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~~C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~~~ 81 (394)
|.|+|||||+++||+|. .|..|..+ .+..|+|++|+|++...
T Consensus 14 ~~v~~DTGS~~~wv~~~----~c~~~~~~----~~~~y~~~~Sst~~~~~------------------------------ 55 (278)
T cd06097 14 LNLDLDTGSSDLWVFSS----ETPAAQQG----GHKLYDPSKSSTAKLLP------------------------------ 55 (278)
T ss_pred EEEEEeCCCCceeEeeC----CCCchhhc----cCCcCCCccCccceecC------------------------------
Confidence 78999999999999999 89888643 46789999999987542
Q ss_pred CCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCC------CCcceEeecCCCCCChh--
Q 037706 82 KSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTY------REPIGIAGFGRGALSVP-- 153 (394)
Q Consensus 82 ~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~------~~~dGIlGLg~~~~S~~-- 153 (394)
.|. |.+.|++|+.+.|.+++|+|+|++ .+++++.||+++... ...+||||||+...+..
T Consensus 56 ------~~~-~~i~Y~~G~~~~G~~~~D~v~ig~------~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~ 122 (278)
T cd06097 56 ------GAT-WSISYGDGSSASGIVYTDTVSIGG------VEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQP 122 (278)
T ss_pred ------CcE-EEEEeCCCCeEEEEEEEEEEEECC------EEECCeEEEEEeecCccccccccccceeeecccccccccc
Confidence 123 999999998667999999999998 788999999998753 25899999999865432
Q ss_pred -------hhhcc--CCCceEEeccCccCCCCCCCCccEEEcccCcC-CCCCceeecCccCCCCCCceEEEeeEEEECCEE
Q 037706 154 -------SQLGF--LQKGFSHCFLAFKYANDPNISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSS 223 (394)
Q Consensus 154 -------~ql~~--~~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~-~~~~~~~~p~~~~~~~~~~y~v~l~~i~v~~~~ 223 (394)
.+|.. .+++||+||.+ ...|+|+|||+|++ +.+++.|+|++.+ ..+|.|.+++|.|+++
T Consensus 123 ~~~~~~~~~l~~~~~~~~Fs~~l~~-------~~~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~- 191 (278)
T cd06097 123 PKQKTFFENALSSLDAPLFTADLRK-------AAPGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGD- 191 (278)
T ss_pred CCCCCHHHHHHHhccCceEEEEecC-------CCCcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCc-
Confidence 22322 35899999985 24799999999987 5899999999753 3589999999999987
Q ss_pred eeeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCCCCC
Q 037706 224 LTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFP 303 (394)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P 303 (394)
..... ....+||||||+++++|++++++|.+++..... . ....+|..||.. .+|
T Consensus 192 ~~~~~---------~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~~--~---------~~~~~~~~~C~~------~~P 245 (278)
T cd06097 192 APWSR---------SGFSAIADTGTTLILLPDAIVEAYYSQVPGAYY--D---------SEYGGWVFPCDT------TLP 245 (278)
T ss_pred ceeec---------CCceEEeecCCchhcCCHHHHHHHHHhCcCCcc--c---------CCCCEEEEECCC------CCC
Confidence 44322 246799999999999999999999887742211 0 012456677731 289
Q ss_pred eEEEEEeCCeEEEecCCCeEEEecCCCCCCceEEEEEEeCCCCCCCCceeecccceeeeEEEEeCCCCEEEEec
Q 037706 304 SITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERIGFQP 377 (394)
Q Consensus 304 ~i~f~f~gg~~~~i~~~~y~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~ 377 (394)
+|+|+| .||||++|||++|+|||.+|+|||||+
T Consensus 246 ~i~f~~-----------------------------------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 246 DLSFAV-----------------------------------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred CEEEEE-----------------------------------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 999998 399999999999999999999999995
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=2.3e-42 Score=328.03 Aligned_cols=245 Identities=23% Similarity=0.348 Sum_probs=193.3
Q ss_pred cEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCCCCcceEeecCCCCC-----------Chhhhhcc--
Q 037706 92 FAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTYREPIGIAGFGRGAL-----------SVPSQLGF-- 158 (394)
Q Consensus 92 ~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~~~~dGIlGLg~~~~-----------S~~~ql~~-- 158 (394)
|.+.|++|+.+.|.+++|+|+|++ .++.++.|||+.+. ...+||||||+... +++.||..
T Consensus 32 ~~~~Y~~g~~~~G~~~~D~v~~g~------~~~~~~~fg~~~~~-~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g 104 (295)
T cd05474 32 FSISYGDGTSASGTWGTDTVSIGG------ATVKNLQFAVANST-SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQG 104 (295)
T ss_pred eEEEeccCCcEEEEEEEEEEEECC------eEecceEEEEEecC-CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCC
Confidence 889999987677999999999998 68889999999984 35899999998775 57788865
Q ss_pred -C-CCceEEeccCccCCCCCCCCccEEEcccCcC-CCCCceeecCccCCC--CCCceEEEeeEEEECCEEeeeecCccee
Q 037706 159 -L-QKGFSHCFLAFKYANDPNISSPLVIGDVAIS-SKDNLQFTPMLKSPM--YPNYYYIGLEAITIGNSSLTEVPLSLRE 233 (394)
Q Consensus 159 -~-~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~-~~~~~~~~p~~~~~~--~~~~y~v~l~~i~v~~~~~~~~~~~~~~ 233 (394)
+ +++||+||.+. ....|.|+|||+|.. +.+++.|+|++.+.. .+.+|.|.+++|+|++. .+..+.
T Consensus 105 ~i~~~~Fsl~l~~~-----~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~-~~~~~~---- 174 (295)
T cd05474 105 LIKKNAYSLYLNDL-----DASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGS-SGNTTL---- 174 (295)
T ss_pred cccceEEEEEeCCC-----CCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcC-CCcccc----
Confidence 2 57999999873 235799999999987 478999999987542 23689999999999998 664321
Q ss_pred ccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCCCCCeEEEEEeCCe
Q 037706 234 FDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFPSITFHFLNNV 313 (394)
Q Consensus 234 ~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~i~f~f~gg~ 313 (394)
......+||||||++++||+++|++|.+++.+.... . .......|+.. .. |+|+|+|. |+
T Consensus 175 --~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~--~-----~~~~~~~C~~~---------~~-p~i~f~f~-g~ 234 (295)
T cd05474 175 --LSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDS--D-----EGLYVVDCDAK---------DD-GSLTFNFG-GA 234 (295)
T ss_pred --cCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcC--C-----CcEEEEeCCCC---------CC-CEEEEEEC-Ce
Confidence 123468999999999999999999999998765431 0 01122345543 22 99999995 69
Q ss_pred EEEecCCCeEEEecCCCCCCceEEE-EEEeCCCCCCCCceeecccceeeeEEEEeCCCCEEEEecC
Q 037706 314 SLVLPQGNHFYAMSAPSNSSAVKCL-LFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERIGFQPM 378 (394)
Q Consensus 314 ~~~i~~~~y~~~~~~~~~~~~~~C~-~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~~ 378 (394)
+++|++++|+++..... .....|+ +++.... +.||||++|||++|++||.+++|||||++
T Consensus 235 ~~~i~~~~~~~~~~~~~-~~~~~C~~~i~~~~~----~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 235 TISVPLSDLVLPASTDD-GGDGACYLGIQPSTS----DYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEEEHHHhEeccccCC-CCCCCeEEEEEeCCC----CcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 99999999998764211 1356896 7876653 37999999999999999999999999985
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1e-40 Score=319.58 Aligned_cols=283 Identities=30% Similarity=0.512 Sum_probs=221.7
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCCCC-CcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCccc
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCMDC-DDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLSTL 80 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~~C-~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~~ 80 (394)
|+|+|||||+++||++. .|..| .. .....|++++|+|++...+
T Consensus 15 ~~~~iDTGS~~~wv~~~----~c~~~~~~----~~~~~y~~~~S~t~~~~~~---------------------------- 58 (317)
T PF00026_consen 15 FRVLIDTGSSDTWVPSS----NCNSCSSC----ASSGFYNPSKSSTFSNQGK---------------------------- 58 (317)
T ss_dssp EEEEEETTBSSEEEEBT----TECSHTHH----CTSC-BBGGGSTTEEEEEE----------------------------
T ss_pred EEEEEecccceeeecee----cccccccc----cccccccccccccccccee----------------------------
Confidence 78999999999999988 78765 11 1368999999999876532
Q ss_pred CCCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCC------CCcceEeecCCCC-----
Q 037706 81 LKSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTY------REPIGIAGFGRGA----- 149 (394)
Q Consensus 81 ~~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~------~~~dGIlGLg~~~----- 149 (394)
. +.+.|++|+ ++|.+++|+|+|++ +.+.++.||.+.... ...+||||||+..
T Consensus 59 ---------~-~~~~y~~g~-~~G~~~~D~v~ig~------~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~ 121 (317)
T PF00026_consen 59 ---------P-FSISYGDGS-VSGNLVSDTVSIGG------LTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSS 121 (317)
T ss_dssp ---------E-EEEEETTEE-EEEEEEEEEEEETT------EEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGG
T ss_pred ---------e-eeeeccCcc-cccccccceEeeee------ccccccceeccccccccccccccccccccccCCcccccc
Confidence 2 999999999 66999999999998 788889999998842 3589999999753
Q ss_pred --CChhhhhcc----CCCceEEeccCccCCCCCCCCccEEEcccCcCC-CCCceeecCccCCCCCCceEEEeeEEEECCE
Q 037706 150 --LSVPSQLGF----LQKGFSHCFLAFKYANDPNISSPLVIGDVAISS-KDNLQFTPMLKSPMYPNYYYIGLEAITIGNS 222 (394)
Q Consensus 150 --~S~~~ql~~----~~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~~-~~~~~~~p~~~~~~~~~~y~v~l~~i~v~~~ 222 (394)
.+++.+|.. .+++||++|.+.. ...|.|+|||+|+++ .+++.|+|+.. ..+|.|.+++|.+++.
T Consensus 122 ~~~~~~~~l~~~g~i~~~~fsl~l~~~~-----~~~g~l~~Gg~d~~~~~g~~~~~~~~~----~~~w~v~~~~i~i~~~ 192 (317)
T PF00026_consen 122 TYPTFLDQLVQQGLISSNVFSLYLNPSD-----SQNGSLTFGGYDPSKYDGDLVWVPLVS----SGYWSVPLDSISIGGE 192 (317)
T ss_dssp TS-SHHHHHHHTTSSSSSEEEEEEESTT-----SSEEEEEESSEEGGGEESEEEEEEBSS----TTTTEEEEEEEEETTE
T ss_pred cCCcceecchhhccccccccceeeeecc-----cccchheeeccccccccCceeccCccc----cccccccccccccccc
Confidence 356666654 3689999998742 467999999999884 88999999983 4589999999999998
Q ss_pred EeeeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCCCC
Q 037706 223 SLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLF 302 (394)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ 302 (394)
...... ...++|||||++++||+++++.|++++...... ..|..+|.. ...+
T Consensus 193 -~~~~~~---------~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~--------------~~~~~~c~~----~~~~ 244 (317)
T PF00026_consen 193 -SVFSSS---------GQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD--------------GVYSVPCNS----TDSL 244 (317)
T ss_dssp -EEEEEE---------EEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC--------------SEEEEETTG----GGGS
T ss_pred -cccccc---------ceeeecccccccccccchhhHHHHhhhcccccc--------------eeEEEeccc----cccc
Confidence 444332 135999999999999999999999998765441 334444421 2468
Q ss_pred CeEEEEEeCCeEEEecCCCeEEEecCCCCCCceEEE-EEEeCCCCCCCCceeecccceeeeEEEEeCCCCEEEEecC
Q 037706 303 PSITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCL-LFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERIGFQPM 378 (394)
Q Consensus 303 P~i~f~f~gg~~~~i~~~~y~~~~~~~~~~~~~~C~-~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~~ 378 (394)
|.|+|.|. +.++.|+|++|+++.... ....|+ +|...+.......+|||.+|||++|+|||.+++|||||++
T Consensus 245 p~l~f~~~-~~~~~i~~~~~~~~~~~~---~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 245 PDLTFTFG-GVTFTIPPSDYIFKIEDG---NGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEEEEET-TEEEEEEHHHHEEEESST---TSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ceEEEeeC-CEEEEecchHhccccccc---ccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 99999995 799999999999887543 234898 6665221223357999999999999999999999999974
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.3e-39 Score=303.88 Aligned_cols=252 Identities=34% Similarity=0.581 Sum_probs=200.8
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCCCCCcccCCCCCCC--CCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCcc
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCMDCDDYRNNKLMSN--FSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLST 79 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~~C~~~~~~~~~~~--f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~ 79 (394)
|.|+|||||+++||+|. .|..|..+. ... |++..|+++.
T Consensus 14 ~~l~~DTGS~~~wv~~~----~c~~~~~~~----~~~~~~~~~~s~~~~------------------------------- 54 (283)
T cd05471 14 FSVIFDTGSSLLWVPSS----NCTSCSCQK----HPRFKYDSSKSSTYK------------------------------- 54 (283)
T ss_pred EEEEEeCCCCCEEEecC----CCCcccccc----CCCCccCccCCceee-------------------------------
Confidence 78999999999999999 888776431 222 5555554433
Q ss_pred cCCCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCC-----CCcceEeecCCCC-----
Q 037706 80 LLKSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTY-----REPIGIAGFGRGA----- 149 (394)
Q Consensus 80 ~~~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~-----~~~dGIlGLg~~~----- 149 (394)
+..|. |.+.|++|+.. |.+++|+|+|++ .+++++.|||+.... ...+||||||+..
T Consensus 55 ------~~~~~-~~~~Y~~g~~~-g~~~~D~v~~~~------~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~ 120 (283)
T cd05471 55 ------DTGCT-FSITYGDGSVT-GGLGTDTVTIGG------LTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDG 120 (283)
T ss_pred ------cCCCE-EEEEECCCeEE-EEEEEeEEEECC------EEEeceEEEEEeccCCcccccccceEeecCCccccccc
Confidence 23455 99999999776 999999999998 678899999999764 3589999999987
Q ss_pred -CChhhhhcc----CCCceEEeccCccCCCCCCCCccEEEcccCcC-CCCCceeecCccCCCCCCceEEEeeEEEECCEE
Q 037706 150 -LSVPSQLGF----LQKGFSHCFLAFKYANDPNISSPLVIGDVAIS-SKDNLQFTPMLKSPMYPNYYYIGLEAITIGNSS 223 (394)
Q Consensus 150 -~S~~~ql~~----~~~~Fs~~l~~~~~~~~~~~~G~l~fGg~d~~-~~~~~~~~p~~~~~~~~~~y~v~l~~i~v~~~~ 223 (394)
.+++.||.. .+++||+||.+.. .....|.|+||++|+. +.+++.|+|++.+ .+.+|.|.+++|.|++.
T Consensus 121 ~~s~~~~l~~~~~i~~~~Fs~~l~~~~---~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~- 194 (283)
T cd05471 121 VPSFFDQLKSQGLISSPVFSFYLGRDG---DGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGK- 194 (283)
T ss_pred CCCHHHHHHHCCCCCCCEEEEEEcCCC---CCCCCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCc-
Confidence 788998886 4789999999742 1346899999999988 4889999999875 24589999999999997
Q ss_pred eeeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCccCCCCCCCCCCCCCCC
Q 037706 224 LTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCYRVPCPNNTFTDDLFP 303 (394)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P 303 (394)
..... .....+||||||++++||+++|++|++++.+.... ...|+..+|. ....+|
T Consensus 195 ~~~~~--------~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~------------~~~~~~~~~~----~~~~~p 250 (283)
T cd05471 195 SVISS--------SGGGGAIVDSGTSLIYLPSSVYDAILKALGAAVSS------------SDGGYGVDCS----PCDTLP 250 (283)
T ss_pred eeeec--------CCCcEEEEecCCCCEeCCHHHHHHHHHHhCCcccc------------cCCcEEEeCc----ccCcCC
Confidence 41111 13467999999999999999999999998766541 1233333221 136789
Q ss_pred eEEEEEeCCeEEEecCCCeEEEecCCCCCCceEEEEEEeCCCCCCCCceeecccceeeeEEEEeCCCCEEEEec
Q 037706 304 SITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERIGFQP 377 (394)
Q Consensus 304 ~i~f~f~gg~~~~i~~~~y~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~ 377 (394)
+|+|+| .+|||++|||++|++||.+++|||||+
T Consensus 251 ~i~f~f-----------------------------------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 251 DITFTF-----------------------------------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred CEEEEE-----------------------------------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 999999 289999999999999999999999985
No 24
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.95 E-value=4.3e-28 Score=209.40 Aligned_cols=161 Identities=40% Similarity=0.698 Sum_probs=121.9
Q ss_pred ceEEEeeEEEECCEEeeeecCcceeccCCCCCceEEcccCceeecChHHHHHHHHHHHHhhccCCCCcccccccCCCCcc
Q 037706 209 YYYIGLEAITIGNSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQLLSILQSTITYYPRAKEVEERTGFDLCY 288 (394)
Q Consensus 209 ~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l~~~i~~~~~~~~~~~~~~~~~~~~~C~ 288 (394)
+|+|.|++|+||++ .+.++...+++ +.+.+++||||||++++||+++|++|+++|.+++......+.......++.||
T Consensus 1 ~Y~v~l~~Isvg~~-~l~~~~~~~~~-~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy 78 (161)
T PF14541_consen 1 FYYVNLTGISVGGK-RLPIPPSVFQL-SDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCY 78 (161)
T ss_dssp SEEEEEEEEEETTE-EE---TTCSCE-TTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EE
T ss_pred CccEEEEEEEECCE-EecCChHHhhc-cCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCcee
Confidence 59999999999999 99999888877 67789999999999999999999999999999988432111123345678999
Q ss_pred CCCCCCCCCCCCCCCeEEEEEeCCeEEEecCCCeEEEecCCCCCCceEEEEEEeCCCCCCCCceeecccceeeeEEEEeC
Q 037706 289 RVPCPNNTFTDDLFPSITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDGDYGPSGVFGSFQQQNVEVVYDL 368 (394)
Q Consensus 289 ~~~~~~~~~~~~~~P~i~f~f~gg~~~~i~~~~y~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~ 368 (394)
..+..+.......+|+|+|+|+||+.|+|+|++|++... .+.+|++|.+.... ..+..|||..+|++++++||+
T Consensus 79 ~~~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~-----~~~~Cla~~~~~~~-~~~~~viG~~~~~~~~v~fDl 152 (161)
T PF14541_consen 79 NLSSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVS-----PGVFCLAFVPSDAD-DDGVSVIGNFQQQNYHVVFDL 152 (161)
T ss_dssp EGGCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEEC-----TTEEEESEEEETST-TSSSEEE-HHHCCTEEEEEET
T ss_pred eccccccccccccCCeEEEEEeCCcceeeeccceeeecc-----CCCEEEEEEccCCC-CCCcEEECHHHhcCcEEEEEC
Confidence 985421112357899999999989999999999999875 46899999987211 235799999999999999999
Q ss_pred CCCEEEEec
Q 037706 369 EKERIGFQP 377 (394)
Q Consensus 369 ~~~riGfa~ 377 (394)
+++||||++
T Consensus 153 ~~~~igF~~ 161 (161)
T PF14541_consen 153 ENGRIGFAP 161 (161)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEeC
Confidence 999999986
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.93 E-value=3.2e-26 Score=198.03 Aligned_cols=147 Identities=41% Similarity=0.733 Sum_probs=112.5
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCcccC
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCMDCDDYRNNKLMSNFSPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLSTLL 81 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~~C~~~~~~~~~~~f~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~~~ 81 (394)
+.|+|||||+++|++|. .+.|+|++|+||+.++|.++.|...... +. .|...
T Consensus 14 ~~lvvDtgs~l~W~~C~-----------------~~~f~~~~Sst~~~v~C~s~~C~~~~~~------~~--~~~~~--- 65 (164)
T PF14543_consen 14 FSLVVDTGSDLTWVQCP-----------------DPPFDPSKSSTYRPVPCSSPQCSSAPSF------CP--CCCCS--- 65 (164)
T ss_dssp EEEEEETT-SSEEEET---------------------STT-TTSSBEC-BTTSHHHHHCTSS------BT--CCTCE---
T ss_pred EEEEEECCCCceEEcCC-----------------CcccCCccCCcccccCCCCcchhhcccc------cc--cCCCC---
Confidence 68999999999999984 5899999999999999999999977652 11 11110
Q ss_pred CCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCCC---CcceEeecCCCCCChhhhhcc
Q 037706 82 KSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTYR---EPIGIAGFGRGALSVPSQLGF 158 (394)
Q Consensus 82 ~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~~---~~dGIlGLg~~~~S~~~ql~~ 158 (394)
+..|. |.+.|++|+.++|.+++|+|+|+...+.. ..+.+++|||++...+ ..+||||||+..+||++||..
T Consensus 66 ----~~~C~-y~~~y~~~s~~~G~l~~D~~~~~~~~~~~-~~~~~~~FGC~~~~~g~~~~~~GilGLg~~~~Sl~sQl~~ 139 (164)
T PF14543_consen 66 ----NNSCP-YSQSYGDGSSSSGFLASDTLTFGSSSGGS-NSVPDFIFGCATSNSGLFYGADGILGLGRGPLSLPSQLAS 139 (164)
T ss_dssp ----SSEEE-EEEEETTTEEEEEEEEEEEEEEEEESSSS-EEEEEEEEEEE-GGGTSSTTEEEEEE-SSSTTSHHHHHHH
T ss_pred ----cCccc-ceeecCCCccccCceEEEEEEecCCCCCC-ceeeeEEEEeeeccccCCcCCCcccccCCCcccHHHHHHH
Confidence 67888 99999999999999999999998854322 5677899999988754 589999999999999999955
Q ss_pred -CCCceEEeccCccCCCCCCCCccEEEcc
Q 037706 159 -LQKGFSHCFLAFKYANDPNISSPLVIGD 186 (394)
Q Consensus 159 -~~~~Fs~~l~~~~~~~~~~~~G~l~fGg 186 (394)
..++|||||.+. ++...|+|+||+
T Consensus 140 ~~~~~FSyCL~~~----~~~~~g~l~fG~ 164 (164)
T PF14543_consen 140 SSGNKFSYCLPSS----SPSSSGFLSFGD 164 (164)
T ss_dssp H--SEEEEEB-S-----SSSSEEEEEECS
T ss_pred hcCCeEEEECCCC----CCCCCEEEEeCc
Confidence 459999999982 346799999995
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.74 E-value=8.1e-18 Score=135.47 Aligned_cols=91 Identities=38% Similarity=0.634 Sum_probs=76.0
Q ss_pred EEEEEEcCCcceeEcCCCCCCCCCCCCcccCCCCCCCC-CCCCCCCCcccCCCCccccCccCCCCCCCCCCCCCCCCccc
Q 037706 2 IQVYMDTGSDLTWVPCGNLSFDCMDCDDYRNNKLMSNF-SPSRSSSSSRDTCASSFCLNIHSSDNPFDPCTMSGCSLSTL 80 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~~~~~~C~~C~~~~~~~~~~~f-~~~~Sst~~~~~c~~~~C~~~~~~~~~~~~c~~~~c~~~~~ 80 (394)
|.|+|||||+++||+|. .|..|..+ .++.| +|+.|++++...
T Consensus 12 ~~~~~DTGSs~~Wv~~~----~c~~~~~~----~~~~~~~~~~sst~~~~~----------------------------- 54 (109)
T cd05470 12 FNVLLDTGSSNLWVPSV----DCQSLAIY----SHSSYDDPSASSTYSDNG----------------------------- 54 (109)
T ss_pred EEEEEeCCCCCEEEeCC----CCCCcccc----cccccCCcCCCCCCCCCC-----------------------------
Confidence 78999999999999999 78877543 24566 999999887533
Q ss_pred CCCCCCCCCCCcEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCCC------CcceEeec
Q 037706 81 LKSTCCRPCPSFAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTYR------EPIGIAGF 145 (394)
Q Consensus 81 ~~~~~~~~c~~~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~~------~~dGIlGL 145 (394)
|. |.+.|++|++. |.+++|+|+|++ ..+.++.|||+....+ ..+|||||
T Consensus 55 --------~~-~~~~Y~~g~~~-g~~~~D~v~ig~------~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 55 --------CT-FSITYGTGSLS-GGLSTDTVSIGD------IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred --------cE-EEEEeCCCeEE-EEEEEEEEEECC------EEECCEEEEEEEecCCccccccccccccCC
Confidence 33 99999999866 999999999998 7888999999997643 47999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=97.05 E-value=0.0011 Score=51.10 Aligned_cols=50 Identities=12% Similarity=0.117 Sum_probs=37.6
Q ss_pred cEEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCCCCcceEeecCC
Q 037706 92 FAYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTYREPIGIAGFGR 147 (394)
Q Consensus 92 ~~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~~~~dGIlGLg~ 147 (394)
..+..++|.........+.|++++ .++.++.+..........+||||+.+
T Consensus 45 ~~~~~~~G~~~~~~~~~~~i~ig~------~~~~~~~~~v~d~~~~~~~gIlG~d~ 94 (96)
T cd05483 45 VTVQTANGRVRAARVRLDSLQIGG------ITLRNVPAVVLPGDALGVDGLLGMDF 94 (96)
T ss_pred EEEEecCCCccceEEEcceEEECC------cEEeccEEEEeCCcccCCceEeChHH
Confidence 777888888776777789999998 67777777666543324899999864
No 28
>PF13650 Asp_protease_2: Aspartyl protease
Probab=93.67 E-value=0.37 Score=36.25 Aligned_cols=47 Identities=17% Similarity=0.108 Sum_probs=30.9
Q ss_pred EeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCCCCcceEeecCC
Q 037706 94 YTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTYREPIGIAGFGR 147 (394)
Q Consensus 94 i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~~~~dGIlGLg~ 147 (394)
+.-.+|........-+.+.+++ .++.++.|-... .....+||||+-+
T Consensus 44 ~~~~~g~~~~~~~~~~~i~ig~------~~~~~~~~~v~~-~~~~~~~iLG~df 90 (90)
T PF13650_consen 44 VSGAGGSVTVYRGRVDSITIGG------ITLKNVPFLVVD-LGDPIDGILGMDF 90 (90)
T ss_pred EEeCCCCEEEEEEEEEEEEECC------EEEEeEEEEEEC-CCCCCEEEeCCcC
Confidence 3334555554666667899988 677677765555 2345799999753
No 29
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=93.29 E-value=1.1 Score=43.04 Aligned_cols=49 Identities=22% Similarity=0.298 Sum_probs=32.3
Q ss_pred ecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecc----------cCC-------CCCcceEeecCCC
Q 037706 96 YGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCV----------GST-------YREPIGIAGFGRG 148 (394)
Q Consensus 96 Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~----------~~~-------~~~~dGIlGLg~~ 148 (394)
|++|..+ |-+.+-.|+|++... ..++-|+++-. ..- ...+.||||+|.-
T Consensus 84 F~sgytW-GsVr~AdV~igge~A---~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 84 FASGYTW-GSVRTADVTIGGETA---SSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred ccCcccc-cceEEEEEEEcCeec---cccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 6888899 999999999998532 23443444432 110 0138999999853
No 30
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=89.41 E-value=0.98 Score=36.66 Aligned_cols=48 Identities=10% Similarity=0.075 Sum_probs=33.8
Q ss_pred EEeecCCCeEEEEEEEEEEEeecCCCCceeecCcEEEecccCCCCCcceEeecCC
Q 037706 93 AYTYGEGGLVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTYREPIGIAGFGR 147 (394)
Q Consensus 93 ~i~Yg~Gs~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~~~~dGIlGLg~ 147 (394)
.+.=+.|......+.-|.+.+|+ ..+.|+.+..+.... ..+|+||+.+
T Consensus 56 ~~~ta~G~~~~~~~~l~~l~iG~------~~~~nv~~~v~~~~~-~~~~LLGm~f 103 (121)
T TIGR02281 56 TVSTANGQIKAARVTLDRVAIGG------IVVNDVDAMVAEGGA-LSESLLGMSF 103 (121)
T ss_pred EEEeCCCcEEEEEEEeCEEEECC------EEEeCcEEEEeCCCc-CCceEcCHHH
Confidence 33335666665667889999999 788888887765432 2489999864
No 31
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=86.97 E-value=3.6 Score=34.09 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=25.0
Q ss_pred ceeecccceeeeEEEEeCCCCEEEEec
Q 037706 351 SGVFGSFQQQNVEVVYDLEKERIGFQP 377 (394)
Q Consensus 351 ~~ILG~~fl~~~yvvfD~~~~riGfa~ 377 (394)
..|||..+|+.+..+-|..+++|-|..
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 389999999999999999999999875
No 32
>PF13650 Asp_protease_2: Aspartyl protease
Probab=83.48 E-value=1.7 Score=32.44 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=18.3
Q ss_pred ceEEcccCceeecChHHHHHH
Q 037706 241 GLLVDSGTTYTHLPEPFYSQL 261 (394)
Q Consensus 241 ~~iiDSGTtl~~lp~~~y~~l 261 (394)
.++||||.+.+.+++++++.+
T Consensus 11 ~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 11 RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEEEcCCCCcEEECHHHHHHc
Confidence 389999999999999987665
No 33
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=81.19 E-value=2.7 Score=31.99 Aligned_cols=30 Identities=17% Similarity=0.379 Sum_probs=24.6
Q ss_pred EEEECCEEeeeecCcceeccCCCCCceEEcccCceeecChHHHHHH
Q 037706 216 AITIGNSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQL 261 (394)
Q Consensus 216 ~i~v~~~~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l 261 (394)
.+.|||+ .+. +.||||++.+.++++.+..+
T Consensus 4 ~~~Ing~-~i~---------------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGK-PLK---------------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCE-EEE---------------EEEcCCcceEEeCHHHHHHh
Confidence 4678888 653 79999999999999988654
No 34
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=79.81 E-value=3.3 Score=30.06 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=18.4
Q ss_pred eEEcccCceeecChHHHHHH
Q 037706 242 LLVDSGTTYTHLPEPFYSQL 261 (394)
Q Consensus 242 ~iiDSGTtl~~lp~~~y~~l 261 (394)
++||||.+-.++++++.+.|
T Consensus 22 alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 22 ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEeCCCcceecCHHHHHHh
Confidence 89999999999999988766
No 35
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=79.08 E-value=3.4 Score=33.50 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=26.6
Q ss_pred CceEEEeeEEEECCEEeeeecCcceeccCCCCCceEEcccCceeecChHHHHHH
Q 037706 208 NYYYIGLEAITIGNSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQL 261 (394)
Q Consensus 208 ~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~l 261 (394)
++|.++ +.|||+ .+ .++||||.+.+.+++++.+.|
T Consensus 10 g~~~v~---~~InG~-~~---------------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYAT---GRVNGR-NV---------------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEEE---EEECCE-EE---------------EEEEECCCCcEEcCHHHHHHc
Confidence 456554 678888 54 389999999999999886543
No 36
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=78.58 E-value=7.5 Score=31.55 Aligned_cols=38 Identities=13% Similarity=0.200 Sum_probs=25.3
Q ss_pred eEEEEEEEEEEEeecCCCCceeecCcEEEecccCCCCCcceEeecCC
Q 037706 101 LVTGILTRDTLKVHGSSPGIIREIPKFCFGCVGSTYREPIGIAGFGR 147 (394)
Q Consensus 101 ~~~G~~~~D~v~l~~~~~~~~~~~~~~~fg~~~~~~~~~dGIlGLg~ 147 (394)
...|....+.+.+++ ..+. ..|..... ...|+|||+.+
T Consensus 70 ~~~g~~~~~~l~i~~------~~~~-~~~~Vl~~--~~~d~ILG~d~ 107 (124)
T cd05479 70 KILGRIHLAQVKIGN------LFLP-CSFTVLED--DDVDFLIGLDM 107 (124)
T ss_pred EEEeEEEEEEEEECC------EEee-eEEEEECC--CCcCEEecHHH
Confidence 344777778899988 4443 55655543 25799999864
No 37
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=75.35 E-value=5.5 Score=29.99 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=17.9
Q ss_pred ceEEcccCceeecChHHHHHH
Q 037706 241 GLLVDSGTTYTHLPEPFYSQL 261 (394)
Q Consensus 241 ~~iiDSGTtl~~lp~~~y~~l 261 (394)
.++||||++.+.++.+..+.+
T Consensus 15 ~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 15 RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEEECCCCcEEcCHHHHHHc
Confidence 389999999999999876654
No 38
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=70.73 E-value=6 Score=29.74 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=18.0
Q ss_pred eEEcccCceeecChHHHHHH
Q 037706 242 LLVDSGTTYTHLPEPFYSQL 261 (394)
Q Consensus 242 ~iiDSGTtl~~lp~~~y~~l 261 (394)
+++|||.+.+.++++..+.+
T Consensus 12 fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 12 FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEEECCCCeEEECHHHhhhc
Confidence 79999999999999988764
No 39
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=65.85 E-value=9.5 Score=30.93 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=22.3
Q ss_pred ceeecccceeeeEEEEeCCCCEEEE
Q 037706 351 SGVFGSFQQQNVEVVYDLEKERIGF 375 (394)
Q Consensus 351 ~~ILG~~fl~~~yvvfD~~~~riGf 375 (394)
..|||..||+.+-.+-|..+.+|-+
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 4799999999999999999998753
No 40
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=63.28 E-value=7.4 Score=29.90 Aligned_cols=27 Identities=19% Similarity=0.250 Sum_probs=21.3
Q ss_pred eEEEECCEEeeeecCcceeccCCCCCceEEcccCceeecChHH
Q 037706 215 EAITIGNSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPF 257 (394)
Q Consensus 215 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~ 257 (394)
..|.++++ .+ .++||||+..+.++.+.
T Consensus 8 i~v~i~g~-~i---------------~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 8 ITVKINGK-KI---------------KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEEETTE-EE---------------EEEEETTBSSEEESSGG
T ss_pred EEEeECCE-EE---------------EEEEecCCCcceecccc
Confidence 34677777 54 38999999999999764
No 41
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=56.43 E-value=14 Score=28.33 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=18.8
Q ss_pred ceEEcccCceeecChHHHHHHH
Q 037706 241 GLLVDSGTTYTHLPEPFYSQLL 262 (394)
Q Consensus 241 ~~iiDSGTtl~~lp~~~y~~l~ 262 (394)
.+.+|||.+...||...|..+-
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 4799999999999988876654
No 42
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=51.48 E-value=12 Score=29.62 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=20.0
Q ss_pred ceeecccceeeeEEEEeCCCCEE
Q 037706 351 SGVFGSFQQQNVEVVYDLEKERI 373 (394)
Q Consensus 351 ~~ILG~~fl~~~yvvfD~~~~ri 373 (394)
..+||..||+.+-++-|..++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 57999999999999999887653
No 43
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=50.61 E-value=12 Score=28.29 Aligned_cols=17 Identities=29% Similarity=0.458 Sum_probs=15.3
Q ss_pred EEEEEEcCCcceeEcCC
Q 037706 2 IQVYMDTGSDLTWVPCG 18 (394)
Q Consensus 2 f~v~iDTGS~~~Wv~~~ 18 (394)
+.+.+||||+..++...
T Consensus 12 i~~lvDTGA~~svis~~ 28 (91)
T cd05484 12 LKFQLDTGSAITVISEK 28 (91)
T ss_pred EEEEEcCCcceEEeCHH
Confidence 57899999999999976
No 44
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=46.47 E-value=15 Score=29.76 Aligned_cols=21 Identities=38% Similarity=0.509 Sum_probs=18.0
Q ss_pred eEEcccCc-eeecChHHHHHHH
Q 037706 242 LLVDSGTT-YTHLPEPFYSQLL 262 (394)
Q Consensus 242 ~iiDSGTt-l~~lp~~~y~~l~ 262 (394)
.+||||-+ ++.||+++++++-
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 48999999 9999999987643
No 45
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=45.02 E-value=25 Score=28.67 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=22.5
Q ss_pred EEEECCEEeeeecCcceeccCCCCCceEEcccCceeecChHHHHH
Q 037706 216 AITIGNSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYSQ 260 (394)
Q Consensus 216 ~i~v~~~~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~~ 260 (394)
.++|||+ .+ .|.||||+-.+.++.+.++.
T Consensus 28 ~~~ing~-~v---------------kA~VDtGAQ~tims~~~a~r 56 (124)
T PF09668_consen 28 NCKINGV-PV---------------KAFVDTGAQSTIMSKSCAER 56 (124)
T ss_dssp EEEETTE-EE---------------EEEEETT-SS-EEEHHHHHH
T ss_pred EEEECCE-EE---------------EEEEeCCCCccccCHHHHHH
Confidence 4778998 65 28999999999999988765
No 46
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=42.09 E-value=19 Score=27.90 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=14.8
Q ss_pred ceEEcccCceeecChHH
Q 037706 241 GLLVDSGTTYTHLPEPF 257 (394)
Q Consensus 241 ~~iiDSGTtl~~lp~~~ 257 (394)
.++||||++.++++.+-
T Consensus 13 ~~~~DTGSs~~Wv~~~~ 29 (109)
T cd05470 13 NVLLDTGSSNLWVPSVD 29 (109)
T ss_pred EEEEeCCCCCEEEeCCC
Confidence 48999999999999764
No 47
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=39.51 E-value=54 Score=29.13 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=26.4
Q ss_pred CCceEEEeeEEEECCEEeeeecCcceeccCCCCCceEEcccCceeecChHHHH
Q 037706 207 PNYYYIGLEAITIGNSSLTEVPLSLREFDSQGNGGLLVDSGTTYTHLPEPFYS 259 (394)
Q Consensus 207 ~~~y~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~~~iiDSGTtl~~lp~~~y~ 259 (394)
.++|.+ ...|||+ .+. .++|||.|.+.|+++..+
T Consensus 103 ~GHF~a---~~~VNGk-~v~---------------fLVDTGATsVal~~~dA~ 136 (215)
T COG3577 103 DGHFEA---NGRVNGK-KVD---------------FLVDTGATSVALNEEDAR 136 (215)
T ss_pred CCcEEE---EEEECCE-EEE---------------EEEecCcceeecCHHHHH
Confidence 356654 4789999 664 799999999999988654
No 48
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=38.74 E-value=42 Score=29.75 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=34.0
Q ss_pred CCCCeEEEEEeCCeEEEecCCCeEEEecCCCCCCceEEEEEEeCCCCCCCCceeecccceeeeEEEEeCCCCEEEEec
Q 037706 300 DLFPSITFHFLNNVSLVLPQGNHFYAMSAPSNSSAVKCLLFQSMDDGDYGPSGVFGSFQQQNVEVVYDLEKERIGFQP 377 (394)
Q Consensus 300 ~~~P~i~f~f~gg~~~~i~~~~y~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfa~ 377 (394)
...+.+.+.++ +..|.+| ++|+.+ ++ -..|||..|+|.|+=.-+.+ .+|-|..
T Consensus 65 ~~~~~~~i~I~-~~~F~IP---~iYq~~---------------~g-----~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 65 KKAKNGKIQIA-DKIFRIP---TIYQQE---------------SG-----IDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred EEecCceEEEc-cEEEecc---EEEEec---------------CC-----CCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 34577777775 4777775 444332 11 24899999999887655554 4676664
No 49
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=33.68 E-value=82 Score=27.00 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=18.4
Q ss_pred ceEEcccCceeecChHHHHHHH
Q 037706 241 GLLVDSGTTYTHLPEPFYSQLL 262 (394)
Q Consensus 241 ~~iiDSGTtl~~lp~~~y~~l~ 262 (394)
.++||||+...++.+++.+.|.
T Consensus 47 ~vLfDSGSPTSfIr~di~~kL~ 68 (177)
T PF12384_consen 47 KVLFDSGSPTSFIRSDIVEKLE 68 (177)
T ss_pred EEEEeCCCccceeehhhHHhhC
Confidence 4899999999999988866554
No 50
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=25.99 E-value=64 Score=30.74 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=14.2
Q ss_pred ceEEcccCceeecChH
Q 037706 241 GLLVDSGTTYTHLPEP 256 (394)
Q Consensus 241 ~~iiDSGTtl~~lp~~ 256 (394)
.++||||++++++|-.
T Consensus 18 ~v~~DTGS~~~wv~~~ 33 (326)
T cd06096 18 SLILDTGSSSLSFPCS 33 (326)
T ss_pred EEEEeCCCCceEEecC
Confidence 4899999999999865
No 51
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=23.84 E-value=58 Score=30.16 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=14.7
Q ss_pred ceEEcccCceeecChHH
Q 037706 241 GLLVDSGTTYTHLPEPF 257 (394)
Q Consensus 241 ~~iiDSGTtl~~lp~~~ 257 (394)
.++||||++.+++|.+-
T Consensus 15 ~v~~DTGS~~~wv~~~~ 31 (278)
T cd06097 15 NLDLDTGSSDLWVFSSE 31 (278)
T ss_pred EEEEeCCCCceeEeeCC
Confidence 48999999999999653
No 52
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=20.77 E-value=85 Score=29.67 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=14.1
Q ss_pred ceEEcccCceeecChH
Q 037706 241 GLLVDSGTTYTHLPEP 256 (394)
Q Consensus 241 ~~iiDSGTtl~~lp~~ 256 (394)
.++||||++++++|..
T Consensus 18 ~v~~DTGS~~~wv~~~ 33 (318)
T cd05477 18 LVLFDTGSSNLWVPSV 33 (318)
T ss_pred EEEEeCCCccEEEccC
Confidence 3899999999999964
No 53
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=20.60 E-value=81 Score=29.93 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=14.1
Q ss_pred ceEEcccCceeecChH
Q 037706 241 GLLVDSGTTYTHLPEP 256 (394)
Q Consensus 241 ~~iiDSGTtl~~lp~~ 256 (394)
.++||||++.+++|..
T Consensus 21 ~v~~DTGSs~~Wv~~~ 36 (325)
T cd05490 21 TVVFDTGSSNLWVPSV 36 (325)
T ss_pred EEEEeCCCccEEEEcC
Confidence 4899999999999864
No 54
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=20.56 E-value=76 Score=29.12 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=13.6
Q ss_pred ceEEcccCceeecCh
Q 037706 241 GLLVDSGTTYTHLPE 255 (394)
Q Consensus 241 ~~iiDSGTtl~~lp~ 255 (394)
.++||||++.+++|.
T Consensus 16 ~v~~DTGSs~~wv~~ 30 (265)
T cd05476 16 SLIVDTGSDLTWTQC 30 (265)
T ss_pred EEEecCCCCCEEEcC
Confidence 489999999999986
Done!