BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037707
(210 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TEJ|A Chain A, Crystal Structure Of A Domain Fragment Involved In Peptide
Natural Product Biosynthesis
pdb|3TEJ|B Chain B, Crystal Structure Of A Domain Fragment Involved In Peptide
Natural Product Biosynthesis
Length = 329
Score = 30.8 bits (68), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 127 RYSNISFFSVLDTSFKLSQSNVEKFPSRSFDQFVWNSINE------AVNQALSTTKMFAT 180
R ++F +LDT +Q+ EK + D V IN A Q ++T++F T
Sbjct: 190 RGEQVAFLGLLDTWPPETQNWQEK-EANGLDPEVLAEINREREAFLAAQQGSTSTELFTT 248
Query: 181 VKKNYTASQTLYSLVQCTP 199
++ NY + L + P
Sbjct: 249 IEGNYADAVRLLTTAHSVP 267
>pdb|2ROQ|A Chain A, Solution Structure Of The Thiolation-Thioesterase
Di-Domain Of Enterobactin Synthetase Component F
Length = 343
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 127 RYSNISFFSVLDTSFKLSQSNVEKFPSRSFDQFVWNSINE------AVNQALSTTKMFAT 180
R ++F +LDT +Q+ EK + D V IN A Q ++T++F T
Sbjct: 196 RGEQVAFLGLLDTWPPETQNWQEK-EANGLDPEVLAEINREREAFLAAQQGSTSTELFTT 254
Query: 181 VKKNYTASQTLYSLVQCTP 199
++ NY + L + P
Sbjct: 255 IEGNYADAVRLLTTAHSVP 273
>pdb|2I62|A Chain A, Mouse Nicotinamide N-methyltransferase
pdb|2I62|B Chain B, Mouse Nicotinamide N-methyltransferase
pdb|2I62|C Chain C, Mouse Nicotinamide N-methyltransferase
pdb|2I62|D Chain D, Mouse Nicotinamide N-methyltransferase
Length = 265
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 161 WNSINEAVNQALSTTKMFATVKKNYTAS----QTLYSLVQCTPDLSR 203
W ++ +AV +A T + F + +NY+++ + L+SLV P S
Sbjct: 219 WETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKPGRSE 265
>pdb|1ALW|A Chain A, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALW|B Chain B, Inhibitor And Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|A Chain A, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1ALV|B Chain B, Calcium Bound Domain Vi Of Porcine Calpain
pdb|1NX0|A Chain A, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX0|B Chain B, Structure Of Calpain Domain 6 In Complex With Calpastatin
Dic
pdb|1NX1|A Chain A, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX1|B Chain B, Calpain Domain Vi Complexed With Calpastatin Inhibitory
Domain C (Dic)
pdb|1NX2|A Chain A, Calpain Domain Vi
pdb|1NX3|A Chain A, Calpain Domain Vi In Complex With The Inhibitor Pd150606
Length = 173
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Query: 91 FGPETCQNCVSVATSDTAQLCPFGKENTIGYEECLLRYSNISFFSVLDTSFKLSQSN 147
FG +TC++ V+V SDT GK +G+EE ++NI + + F + +S
Sbjct: 44 FGIDTCRSMVAVMDSDTT-----GK---LGFEEFKYLWNNIKKWQAIYKQFDVDRSG 92
>pdb|3HHS|B Chain B, Crystal Structure Of Manduca Sexta Prophenoloxidase
Length = 684
Score = 28.9 bits (63), Expect = 2.0, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 149 EKFPSRSFDQFVWNSINEAVNQALSTTKMFATVKKNYTASQT 190
E FP + D V+ E N +S ++M V NYTA+ T
Sbjct: 148 ETFPDKFMDSKVFLRAREVSNVVISGSRMPVNVPINYTANTT 189
>pdb|1KFX|S Chain S, Crystal Structure Of Human M-Calpain Form I
pdb|1KFU|S Chain S, Crystal Structure Of Human M-Calpain Form Ii
Length = 184
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 91 FGPETCQNCVSVATSDTAQLCPFGKENTIGYEECLLRYSNISFFSVLDTSFKLSQS 146
FG +TC++ V+V SDT GK +G+EE ++NI + + F +S
Sbjct: 55 FGIDTCRSMVAVMDSDTT-----GK---LGFEEFKYLWNNIKRWQAIYKQFDTDRS 102
>pdb|3A2E|A Chain A, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
Protein From Ginkgo Biloba Seeds
pdb|3A2E|B Chain B, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
Protein From Ginkgo Biloba Seeds
pdb|3A2E|C Chain C, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
Protein From Ginkgo Biloba Seeds
pdb|3A2E|D Chain D, Crystal Structure Of Ginkbilobin-2, The Novel Antifungal
Protein From Ginkgo Biloba Seeds
Length = 108
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 138 DTSFKLSQSNVEKFPSRS-FDQFVWNSINEAVNQALSTTKMFATVKKNYTASQTLYSLVQ 196
+T+F S N +K PS S F++ + + + + + T + + T Y
Sbjct: 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRAT 61
Query: 197 CTPDLSRDDCSSCL 210
C +S+ DC++CL
Sbjct: 62 CKQSISQSDCTACL 75
>pdb|1QXP|A Chain A, Crystal Structure Of A Mu-Like Calpain
pdb|1QXP|B Chain B, Crystal Structure Of A Mu-Like Calpain
Length = 900
Score = 26.6 bits (57), Expect = 9.2, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 91 FGPETCQNCVSVATSDTAQLCPFGKENTIGYEECLLRYSNISFFSVLDTSFKLSQS 146
FG +TC++ V+V SDT GK +G+EE ++NI + + F+ +S
Sbjct: 771 FGIDTCRSMVAVMDSDTT-----GK---LGFEEFKYLWNNIKKWQGIYKRFETDRS 818
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,540,370
Number of Sequences: 62578
Number of extensions: 187269
Number of successful extensions: 719
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 9
length of query: 210
length of database: 14,973,337
effective HSP length: 95
effective length of query: 115
effective length of database: 9,028,427
effective search space: 1038269105
effective search space used: 1038269105
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)