Query 037707
Match_columns 210
No_of_seqs 195 out of 1325
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 05:30:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037707.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/037707hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a2e_A Ginkbilobin-2; domain 2 100.0 4.1E-31 1.4E-35 196.8 10.8 107 22-133 1-108 (108)
2 2e79_A Ginkbilobin-2; DUF26 fo 100.0 2.7E-30 9.1E-35 192.4 10.9 106 23-133 2-108 (108)
3 2e79_A Ginkbilobin-2; DUF26 fo 99.5 7.6E-14 2.6E-18 103.2 7.7 71 139-210 3-75 (108)
4 3a2e_A Ginkbilobin-2; domain 2 99.4 2.1E-13 7.3E-18 100.8 7.7 69 141-210 5-75 (108)
5 1gff_3 Bacteriophage G4 capsid 14.5 73 0.0025 16.4 1.2 11 113-123 11-21 (26)
6 2xk0_A Polycomb protein PCL; t 8.8 1.4E+02 0.005 19.4 1.5 12 121-132 41-52 (69)
7 1m06_J J protein, small core p 7.5 69 0.0024 16.5 -0.4 11 113-123 10-20 (26)
8 3nt8_A Ancylostoma secreted pr 7.0 3.8E+02 0.013 22.7 3.9 28 30-59 26-53 (424)
9 2lif_A Core protein P21; signa 8.7 1.1E+02 0.0038 16.2 0.0 8 6-13 8-15 (27)
10 1g25_A CDK-activating kinase a 5.3 2.5E+02 0.0086 16.7 1.3 20 94-113 29-48 (65)
No 1
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.97 E-value=4.1e-31 Score=196.82 Aligned_cols=107 Identities=19% Similarity=0.479 Sum_probs=98.0
Q ss_pred CCCcccccCCCCCccCCCchHHHHHHHHHHHHHHhhccCCCCCcccCeeeeecCC-CCCeeEEEEEecCCCChhchHHHH
Q 037707 22 DKPTYIYHNCPSTNFTPNSAYQSNLNLLLSTLRSNATRGSSDKFSKGFYNTTTGH-EPNKVYGLFLCRGDFGPETCQNCV 100 (210)
Q Consensus 22 ~~~~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~~~~~~f~~~~~g~-~~~~vYgl~qC~~Dls~~~C~~Cl 100 (210)
+++.++++.|++++|+++++|++||+.||+.|+++++.++. +|+++..|. ++++||||+|||||+++++|+.||
T Consensus 1 A~t~~v~~~Cn~~~~t~~s~f~~nl~~ll~~L~~~a~~s~~-----~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl 75 (108)
T 3a2e_A 1 ANTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGY-----DYKTSRAGSGGAPTAYGRATCKQSISQSDCTACL 75 (108)
T ss_dssp CCCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTS-----EEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHH
T ss_pred CCcceeeeecCCCccCCCChHHHHHHHHHHHHHhhCccccC-----CceEeeccCCCCceEEEEEEEcCCCCHHHHHHHH
Confidence 36788999999899999999999999999999999887653 677776654 568999999999999999999999
Q ss_pred HHHHHHhhhhCCCCceeEEEccceEEEEccccc
Q 037707 101 SVATSDTAQLCPFGKENTIGYEECLLRYSNISF 133 (210)
Q Consensus 101 ~~a~~~~~~~C~~~~~a~i~~~~C~lRYs~~~f 133 (210)
+.|+.++++.||++++|+||+++|+||||+++|
T Consensus 76 ~~a~~~~~~~C~~~~g~~i~~~~C~lRY~~~~F 108 (108)
T 3a2e_A 76 SNLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHHTTHHHHTTSBSSEEEEETTEEEEEESSCC
T ss_pred HHHHHHHHHHCCCCceEEEECCCEEEEEeCCcC
Confidence 999999999999999999999999999999998
No 2
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.97 E-value=2.7e-30 Score=192.36 Aligned_cols=106 Identities=19% Similarity=0.479 Sum_probs=97.8
Q ss_pred CCcccccCCCCCccCCCchHHHHHHHHHHHHHHhhccCCCCCcccCeeeeecCCCC-CeeEEEEEecCCCChhchHHHHH
Q 037707 23 KPTYIYHNCPSTNFTPNSAYQSNLNLLLSTLRSNATRGSSDKFSKGFYNTTTGHEP-NKVYGLFLCRGDFGPETCQNCVS 101 (210)
Q Consensus 23 ~~~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~~~~~~~f~~~~~g~~~-~~vYgl~qC~~Dls~~~C~~Cl~ 101 (210)
+.+++++.|++++++++++|++||+.||+.|+.+++.++. +|++++.|.++ ++||||+||+||+++++|+.||+
T Consensus 2 ~t~~~~~~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~~~~-----~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl~ 76 (108)
T 2e79_A 2 NTAFVSSACNTQKIPSGSPFNRNLRAMLADLRQNTAFSGY-----DYKTSRAGSGGAPTAYGRATCKQSISQSDCTACLS 76 (108)
T ss_dssp CCCEEEEEECSSBCCTTCTHHHHHHHHHHHHHHHGGGTTS-----EEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHHH
T ss_pred CceeeeeeCCCCeeCCcchHHHHHHHHHHHHHHHhhcCCc-----ccEEEecCCCCCCcEEEEEecCCCCChHHHHHHHH
Confidence 4567899999999999999999999999999999876543 79988888765 79999999999999999999999
Q ss_pred HHHHHhhhhCCCCceeEEEccceEEEEccccc
Q 037707 102 VATSDTAQLCPFGKENTIGYEECLLRYSNISF 133 (210)
Q Consensus 102 ~a~~~~~~~C~~~~~a~i~~~~C~lRYs~~~f 133 (210)
.++.++++.|+++++|+||+++|+||||+++|
T Consensus 77 ~a~~~~~~~C~~~~g~~i~~~~C~lRy~~~~F 108 (108)
T 2e79_A 77 NLVNRIFSICNNAIGARVQLVDCFIQYEQRSF 108 (108)
T ss_dssp HHHTTHHHHTTSBSSEEEEESSEEEEEESSCC
T ss_pred HHHHHHHHhCCCCceEEEECCCeEEEEeCCCC
Confidence 99999999999999999999999999999987
No 3
>2e79_A Ginkbilobin-2; DUF26 fold, C-X8-C-X2-C motif, lectin, plant protein, sugar binding protein; 2.38A {Ginkgo biloba} PDB: 3a2e_A
Probab=99.48 E-value=7.6e-14 Score=103.22 Aligned_cols=71 Identities=23% Similarity=0.395 Sum_probs=56.5
Q ss_pred CCceeeeccCCC--CcchhhHHHHHHHHHHHHHHhcccccceEeeeeccCCCccEEEEEecCCCCChhhhcccC
Q 037707 139 TSFKLSQSNVEK--FPSRSFDQFVWNSINEAVNQALSTTKMFATVKKNYTASQTLYSLVQCTPDLSRDDCSSCL 210 (210)
Q Consensus 139 ~~~~~~~~n~~~--~~~~~f~~~~~~ll~~l~~~a~~~~~~fa~~~~~~~~~~~vY~laQCt~dLs~~~C~~CL 210 (210)
+.+.++.++..+ .... |++.+..||+.|+..|+.++.+|++++...+..++||||+||+|||++.+|+.||
T Consensus 3 t~~~~~~C~~~~~~~~s~-f~~nl~~ll~~L~~~a~~~~~~f~~~~~g~~~~~~vYgl~qC~~Dls~~~C~~Cl 75 (108)
T 2e79_A 3 TAFVSSACNTQKIPSGSP-FNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACL 75 (108)
T ss_dssp CCEEEEEECSSBCCTTCT-HHHHHHHHHHHHHHHGGGTTSEEEEEECCCTTCCCEEEEEEECTTSCHHHHHHHH
T ss_pred ceeeeeeCCCCeeCCcch-HHHHHHHHHHHHHHHhhcCCcccEEEecCCCCCCcEEEEEecCCCCChHHHHHHH
Confidence 445566666655 4456 9999999999999888755567888865443457999999999999999999996
No 4
>3a2e_A Ginkbilobin-2; domain 26 unknown function (DUF26), C-X8-C-X2-C motif, antifungal protein, embryo-abundant protein (EAP), plant protein; 2.38A {Ginkgo biloba}
Probab=99.44 E-value=2.1e-13 Score=100.83 Aligned_cols=69 Identities=22% Similarity=0.389 Sum_probs=56.9
Q ss_pred ceeeeccCCC--CcchhhHHHHHHHHHHHHHHhcccccceEeeeeccCCCccEEEEEecCCCCChhhhcccC
Q 037707 141 FKLSQSNVEK--FPSRSFDQFVWNSINEAVNQALSTTKMFATVKKNYTASQTLYSLVQCTPDLSRDDCSSCL 210 (210)
Q Consensus 141 ~~~~~~n~~~--~~~~~f~~~~~~ll~~l~~~a~~~~~~fa~~~~~~~~~~~vY~laQCt~dLs~~~C~~CL 210 (210)
.....+|..+ .... |...+..||..|...++.+..+|+++.....+..+||||+||+|||++++|+.||
T Consensus 5 ~v~~~Cn~~~~t~~s~-f~~nl~~ll~~L~~~a~~s~~~~~t~~~~~~~~~~vygl~qC~~Dls~~~C~~Cl 75 (108)
T 3a2e_A 5 FVSSACNTQKIPSGSP-FNRNLRAMLADLRQNTAFSGYDYKTSRAGSGGAPTAYGRATCKQSISQSDCTACL 75 (108)
T ss_dssp EEEEEECSSBCCTTCT-HHHHHHHHHHHHHHHGGGTTSEEEEEECCSTTCCCEEEEEEECTTSCHHHHHHHH
T ss_pred eeeeecCCCccCCCCh-HHHHHHHHHHHHHhhCccccCCceEeeccCCCCceEEEEEEEcCCCCHHHHHHHH
Confidence 3445566666 4456 9999999999999888877778888776655668999999999999999999996
No 5
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=14.55 E-value=73 Score=16.36 Aligned_cols=11 Identities=18% Similarity=0.090 Sum_probs=8.4
Q ss_pred CCceeEEEccc
Q 037707 113 FGKENTIGYEE 123 (210)
Q Consensus 113 ~~~~a~i~~~~ 123 (210)
.++||+.||.+
T Consensus 11 r~kgarlwyvg 21 (26)
T 1gff_3 11 KSKGARLWYVG 21 (26)
T ss_pred CCCceEEEEec
Confidence 46799999854
No 6
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=8.84 E-value=1.4e+02 Score=19.37 Aligned_cols=12 Identities=25% Similarity=0.600 Sum_probs=9.7
Q ss_pred ccceEEEEcccc
Q 037707 121 YEECLLRYSNIS 132 (210)
Q Consensus 121 ~~~C~lRYs~~~ 132 (210)
-.+|++||++.+
T Consensus 41 ~~~ClV~FeD~S 52 (69)
T 2xk0_A 41 SDQYLIRFDDQS 52 (69)
T ss_dssp SSCEEEEETTCC
T ss_pred CceEEEEecCCc
Confidence 458999999865
No 7
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=7.54 E-value=69 Score=16.50 Aligned_cols=11 Identities=18% Similarity=0.051 Sum_probs=8.1
Q ss_pred CCceeEEEccc
Q 037707 113 FGKENTIGYEE 123 (210)
Q Consensus 113 ~~~~a~i~~~~ 123 (210)
.++||+.||.+
T Consensus 10 r~kgarlwyvg 20 (26)
T 1m06_J 10 RRKGARLWYVG 20 (26)
T ss_dssp CCSSSCCCCSS
T ss_pred cCCceEEEEEc
Confidence 46788988853
No 8
>3nt8_A Ancylostoma secreted protein 1; pathogenesis related-1 protein, cysteine-rich secretory PROT domain, immune system; 2.20A {Necator americanus}
Probab=7.01 E-value=3.8e+02 Score=22.74 Aligned_cols=28 Identities=7% Similarity=0.201 Sum_probs=18.0
Q ss_pred CCCCCccCCCchHHHHHHHHHHHHHHhhcc
Q 037707 30 NCPSTNFTPNSAYQSNLNLLLSTLRSNATR 59 (210)
Q Consensus 30 ~C~~~~~~~~s~f~~nl~~ll~~L~~~a~~ 59 (210)
.|+... -...++..+......++...+.
T Consensus 26 ~c~~~~--~~~~~~~~il~~HN~~R~~~A~ 53 (424)
T 3nt8_A 26 GCSNSG--ITDSDRQAFLDFHNNARRRVAK 53 (424)
T ss_dssp CCCCCS--SCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCC--CCHHHHHHHHHHHHHHHHHHhC
Confidence 486542 3455777777777777777643
No 9
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=8.74 E-value=1.1e+02 Score=16.19 Aligned_cols=8 Identities=38% Similarity=0.580 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 037707 6 VFVTALSV 13 (210)
Q Consensus 6 ~~~~~~l~ 13 (210)
||++.++.
T Consensus 8 iFlLaLls 15 (27)
T 2lif_A 8 IFLLALLS 15 (27)
Confidence 34444433
No 10
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=5.30 E-value=2.5e+02 Score=16.68 Aligned_cols=20 Identities=30% Similarity=0.629 Sum_probs=14.3
Q ss_pred hchHHHHHHHHHHhhhhCCC
Q 037707 94 ETCQNCVSVATSDTAQLCPF 113 (210)
Q Consensus 94 ~~C~~Cl~~a~~~~~~~C~~ 113 (210)
.-|..|+.....+-...||-
T Consensus 29 ~fC~~Ci~~~~~~~~~~CP~ 48 (65)
T 1g25_A 29 TLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CEEHHHHHHHHHTTSSSCTT
T ss_pred HhHHHHHHHHHHcCCCcCCC
Confidence 35899999887655556773
Done!