Query 037707
Match_columns 210
No_of_seqs 195 out of 1325
Neff 7.4
Searched_HMMs 13730
Date Mon Mar 25 05:30:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/037707.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/037707hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k0ia2 d.16.1.2 (A:174-275) p 6.8 1.9E+02 0.013 18.6 3.1 31 173-205 30-60 (102)
2 d1ucra_ a.4.5.45 (A:) Dissimil 6.3 2.4E+02 0.017 16.9 3.2 29 158-194 37-65 (74)
3 d1g25a_ g.44.1.1 (A:) TFIIH Ma 5.8 1.1E+02 0.0077 17.5 1.3 20 94-113 29-48 (65)
4 d1cl4a_ g.40.1.1 (A:) Nucleoca 5.0 40 0.0029 17.3 -1.0 22 107-128 1-22 (32)
5 d1rmda2 g.44.1.1 (A:1-86) V(D) 4.9 1.5E+02 0.011 18.1 1.6 20 94-113 44-63 (86)
6 d1weoa_ g.44.1.1 (A:) Cellulos 4.6 1.1E+02 0.0078 19.4 0.7 31 92-132 42-72 (93)
7 d1ha9a_ g.3.2.1 (A:) Trypsin i 4.5 86 0.0063 15.8 0.1 7 84-90 12-18 (34)
8 d1f32a_ d.62.1.1 (A:) Pepsin i 3.7 2.9E+02 0.021 18.7 2.5 22 106-127 60-81 (147)
9 d1rhya1 d.14.1.9 (A:2-93) Imid 3.4 4.1E+02 0.03 16.4 2.9 24 85-108 59-88 (92)
10 d2axth1 f.23.33.1 (H:2-65) Pho 3.3 1.7E+02 0.013 17.0 0.8 12 1-12 34-45 (64)
No 1
>d1k0ia2 d.16.1.2 (A:174-275) p-Hydroxybenzoate hydroxylase (PHBH) {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.79 E-value=1.9e+02 Score=18.62 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=20.4
Q ss_pred ccccceEeeeeccCCCccEEEEEecCCCCChhh
Q 037707 173 STTKMFATVKKNYTASQTLYSLVQCTPDLSRDD 205 (210)
Q Consensus 173 ~~~~~fa~~~~~~~~~~~vY~laQCt~dLs~~~ 205 (210)
++.++||--.+.-..-++.| .||-+|-..++
T Consensus 30 ~h~rGFAL~SmRs~~~sRyY--lQc~~~d~~e~ 60 (102)
T d1k0ia2 30 NHPRGFALCSQRSATRSQYY--VQVPLSEKVED 60 (102)
T ss_dssp CCTTCCEEEEEEETTEEEEE--EEECTTCCGGG
T ss_pred ecCCceEEEeccCCcceEEE--EEcCCCCCccc
Confidence 46788888776633334444 69998876654
No 2
>d1ucra_ a.4.5.45 (A:) Dissimilatory sulfite reductase DsvD {Desulfovibrio vulgaris [TaxId: 881]}
Probab=6.32 E-value=2.4e+02 Score=16.93 Aligned_cols=29 Identities=24% Similarity=0.399 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhcccccceEeeeeccCCCccEEEE
Q 037707 158 QFVWNSINEAVNQALSTTKMFATVKKNYTASQTLYSL 194 (210)
Q Consensus 158 ~~~~~ll~~l~~~a~~~~~~fa~~~~~~~~~~~vY~l 194 (210)
+.+..++++|+.+.. -..|. +++.++|||
T Consensus 37 R~vKK~~~~lV~e~~--L~ywS------SGSTTMYgl 65 (74)
T d1ucra_ 37 REVKKILTALVNDEV--LEYWS------SGSTTMYGL 65 (74)
T ss_dssp HHHHHHHHHHHHTTS--EEEEE------ETTEEEEEE
T ss_pred HHHHHHHHHHhccce--EEEEc------CCCcEEecc
Confidence 456777777775542 11222 356788987
No 3
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.82 E-value=1.1e+02 Score=17.48 Aligned_cols=20 Identities=30% Similarity=0.629 Sum_probs=16.0
Q ss_pred hchHHHHHHHHHHhhhhCCC
Q 037707 94 ETCQNCVSVATSDTAQLCPF 113 (210)
Q Consensus 94 ~~C~~Cl~~a~~~~~~~C~~ 113 (210)
.-|..|+...+..-...||.
T Consensus 29 ~fc~~Ci~~~~~~~~~~CP~ 48 (65)
T d1g25a_ 29 TLCESCVDLLFVRGAGNCPE 48 (65)
T ss_dssp CEEHHHHHHHHHTTSSSCTT
T ss_pred HhhHHHHHHHhCcCcCCCCC
Confidence 45899999998776667884
No 4
>d1cl4a_ g.40.1.1 (A:) Nucleocapsid protein from mason-pfizer monkey virus (MPMV) {Mason-pfizer monkey virus [TaxId: 11855]}
Probab=5.01 E-value=40 Score=17.30 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=16.2
Q ss_pred hhhhCCCCceeEEEccceEEEE
Q 037707 107 TAQLCPFGKENTIGYEECLLRY 128 (210)
Q Consensus 107 ~~~~C~~~~~a~i~~~~C~lRY 128 (210)
++..||.=+.++-|-..|.-+.
T Consensus 1 ~P~lCPrC~kG~HWa~~Crsk~ 22 (32)
T d1cl4a_ 1 VPGLCPRCKRGKHWANECKSKT 22 (32)
T ss_dssp CCCSCSSCSSCSSCSTTCCCTT
T ss_pred CCccCccccCcchHHHHhhhhh
Confidence 3567888788888888886544
No 5
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.87 E-value=1.5e+02 Score=18.13 Aligned_cols=20 Identities=20% Similarity=0.476 Sum_probs=15.5
Q ss_pred hchHHHHHHHHHHhhhhCCC
Q 037707 94 ETCQNCVSVATSDTAQLCPF 113 (210)
Q Consensus 94 ~~C~~Cl~~a~~~~~~~C~~ 113 (210)
.-|+.|+...+..-...||-
T Consensus 44 ~FC~~Ci~~~~~~~~~~CP~ 63 (86)
T d1rmda2 44 LFCRICILRCLKVMGSYCPS 63 (86)
T ss_dssp EEEHHHHHHHHHHTCSBCTT
T ss_pred hhhHHHHHHHHhhCCCcCcc
Confidence 45999999988765567883
No 6
>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=4.60 E-value=1.1e+02 Score=19.36 Aligned_cols=31 Identities=29% Similarity=0.757 Sum_probs=25.7
Q ss_pred ChhchHHHHHHHHHHhhhhCCCCceeEEEccceEEEEcccc
Q 037707 92 GPETCQNCVSVATSDTAQLCPFGKENTIGYEECLLRYSNIS 132 (210)
Q Consensus 92 s~~~C~~Cl~~a~~~~~~~C~~~~~a~i~~~~C~lRYs~~~ 132 (210)
.-..|+.|..--..+-.+.|| +|-.||..+.
T Consensus 42 ~FPvCrpCyEYErkeG~q~Cp----------qCkt~Ykr~k 72 (93)
T d1weoa_ 42 GFPACRPCYEYERREGTQNCP----------QCKTRYKRLR 72 (93)
T ss_dssp CCCCCHHHHHHHHHTSCSSCT----------TTCCCCCCCT
T ss_pred CCccchHHHHHHHhccCccCc----------ccCChhhhhc
Confidence 456799999999999999998 6888886654
No 7
>d1ha9a_ g.3.2.1 (A:) Trypsin inhibitor {Spiny bitter cucumber (Momordica cochinchinensis), MCOTI-II [TaxId: 3674]}
Probab=4.54 E-value=86 Score=15.82 Aligned_cols=7 Identities=57% Similarity=0.880 Sum_probs=5.6
Q ss_pred EEEecCC
Q 037707 84 LFLCRGD 90 (210)
Q Consensus 84 l~qC~~D 90 (210)
|-||++|
T Consensus 12 lkkcrrd 18 (34)
T d1ha9a_ 12 LKKCRRD 18 (34)
T ss_dssp CCBCSSG
T ss_pred HHHhccc
Confidence 5689988
No 8
>d1f32a_ d.62.1.1 (A:) Pepsin inhibitor-3 {Pig roundworm (Ascaris suum) [TaxId: 6253]}
Probab=3.72 E-value=2.9e+02 Score=18.74 Aligned_cols=22 Identities=9% Similarity=0.294 Sum_probs=17.0
Q ss_pred HhhhhCCCCceeEEEccceEEE
Q 037707 106 DTAQLCPFGKENTIGYEECLLR 127 (210)
Q Consensus 106 ~~~~~C~~~~~a~i~~~~C~lR 127 (210)
+.++-|...---..+.++|+++
T Consensus 60 ~~PsFCt~~DTtq~yFdgCmVq 81 (147)
T d1f32a_ 60 KPPPFCGPQDMKMFNFVGCSVL 81 (147)
T ss_dssp CCCGGGCCTTCEEEEETTEEEE
T ss_pred CCCCCCCcCcceEEEEeeeEEE
Confidence 3457788876778888999997
No 9
>d1rhya1 d.14.1.9 (A:2-93) Imidazole glycerol phosphate dehydratase {Fungus (Filobasidiella neoformans) [TaxId: 5207]}
Probab=3.35 E-value=4.1e+02 Score=16.44 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=18.0
Q ss_pred EEecCCCC------hhchHHHHHHHHHHhh
Q 037707 85 FLCRGDFG------PETCQNCVSVATSDTA 108 (210)
Q Consensus 85 ~qC~~Dls------~~~C~~Cl~~a~~~~~ 108 (210)
..|.||+. .+|+.-||..|+.+..
T Consensus 59 i~a~GDl~vD~HHtvEDvgI~LG~al~~AL 88 (92)
T d1rhya1 59 LQCKGDLHIDDHHTAEDCALALGEAFKKAL 88 (92)
T ss_dssp EEEESCC------CCHHHHHHHHHHHHHHH
T ss_pred EEEEeccccccchhhHHHHHHHHHHHHHHh
Confidence 45788874 6779999999987654
No 10
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.26 E-value=1.7e+02 Score=17.04 Aligned_cols=12 Identities=33% Similarity=0.620 Sum_probs=0.0
Q ss_pred CchhHHHHHHHH
Q 037707 1 MNVILVFVTALS 12 (210)
Q Consensus 1 ~~~~~~~~~~~l 12 (210)
|-++++|++++|
T Consensus 34 m~Lf~vfl~iiL 45 (64)
T d2axth1 34 MGLFLVFLLIIL 45 (64)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Done!