BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 037713
         (610 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  964 bits (2491), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/608 (74%), Positives = 523/608 (86%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
           I  YLHRL++C +HQ  L  K +HAQI+K GL+Q  PLPNTL+DAYGKC+L+Q AH+L +
Sbjct: 2   IPSYLHRLKLCTKHQAPLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFD 61

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
           EMPQRDHVSWASILTAYNQA LP KT+SIF  M   D+LQPDHFV+A+L+KAC SL + R
Sbjct: 62  EMPQRDHVSWASILTAYNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKACASLCSLR 121

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           LGKQVHA FVLSPF DDDVVKSSLVDMYAKCGLP+ AR+VFDSI +K SVSWTAMLS YA
Sbjct: 122 LGKQVHARFVLSPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYA 181

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           RSG K +AME+F + PVRNL+ WTAL+SGLVQS   ID  Y FIEMRREGVDIVDPLVLS
Sbjct: 182 RSGLKDEAMELFLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLS 241

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           S+VGACAN AVL LGKQIHGLVI  GYESCLFISNA+VDMYAKCSDI+AA+++F RM  +
Sbjct: 242 SVVGACANLAVLGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHR 301

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           DVVSWTSIIVG AQHG+A+E L LYD+MV A +KPNEVTFVGLIYACSH GLV KGRKLF
Sbjct: 302 DVVSWTSIIVGAAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLF 361

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
           K+MIEDY I+PSLQ +TC LDLLSRSGHL+EAE+LIK MP +PDEPTWAALLSACKHH N
Sbjct: 362 KAMIEDYRISPSLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGN 421

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
           TEMG R+A+ LLSL   +PS+Y+LLSNVYA A  W+ +S+VRKLM+ MEVK++PGYS I+
Sbjct: 422 TEMGVRIADRLLSLNMHEPSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSID 481

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWH 542
            GK S +F+AGET HP+KDEIF LL ELDAEM++RGY+PDTS VLHDME++EKER+LFWH
Sbjct: 482 LGKESQVFHAGETCHPMKDEIFGLLKELDAEMRKRGYIPDTSYVLHDMEEQEKERELFWH 541

Query: 543 SERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           SER AVAYGLLK+VPGTV+R+VKNLR+CGDCH  +K+ S I  +EI+VRDATRYHHFKDG
Sbjct: 542 SERWAVAYGLLKAVPGTVIRIVKNLRICGDCHTFLKLTSSIVHKEIIVRDATRYHHFKDG 601

Query: 603 KCSCNDFW 610
           +CSCNDFW
Sbjct: 602 RCSCNDFW 609


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  946 bits (2445), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/611 (72%), Positives = 520/611 (85%), Gaps = 1/611 (0%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           M ISH+LH+L++CAR Q A     LH+QIIK G  +   L NTL+D YGKC L+  A  L
Sbjct: 1   MNISHFLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQL 60

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
            +EMP RDHVSWASILTA+N+A +P++T+S+ +TM   D LQPDHFVFA +V+AC SLG 
Sbjct: 61  FDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGY 120

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
            RLGKQVHA F+LS FCDD+VVKSSL+DMY KCG P+ ARAVFDSI  KNSVSWT+M+S 
Sbjct: 121 LRLGKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISG 180

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           YARSGRK +AM++F QAPVRNLF WTAL+SGL+QS + I +F  F EMRREG+DIVDPLV
Sbjct: 181 YARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLV 240

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           LSS+VG CAN A+LELGKQIHGLVIALG+ESCLFISNA+VDMYAKCSDI+AAKDIF RM 
Sbjct: 241 LSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMP 300

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
           RKDV+SWTSIIVGTAQHG+AEE L LYDEMV + +KPNEVTFVGL+YACSH GLV +GR+
Sbjct: 301 RKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRE 360

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           LF+SM  DY I PSLQHYTCLLDLLSRSGHLDEAENL+  +PF+PDEPTWA+LLSAC  H
Sbjct: 361 LFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRH 420

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
            N EMG R+A+ +L LKPEDPS+YILLSNVYA A MW  VSKVRKLMS MEV+KEPGYS 
Sbjct: 421 NNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSS 480

Query: 481 IEFGKGSHIFYAGET-SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL 539
           I+FGK S +F+AGE+  HP+K+EI  LL +LDAEM++RGYVP+TS VL+D+EQ+EKE+QL
Sbjct: 481 IDFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQL 540

Query: 540 FWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
           FWHSERLAVAYGLLK+VPGT++R+VKNLR+CGDCH V+K IS I KREI+VRDATRYHHF
Sbjct: 541 FWHSERLAVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHF 600

Query: 600 KDGKCSCNDFW 610
           K+GKCSCNDFW
Sbjct: 601 KEGKCSCNDFW 611


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  946 bits (2444), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 443/611 (72%), Positives = 521/611 (85%), Gaps = 1/611 (0%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           M ISH+LH+L++CAR Q A     LH+QIIK G  +   L NTL+D YGKC L+  A  L
Sbjct: 1   MNISHFLHQLQLCARRQSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQL 60

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
            +EMP RDHVSWASILTA+N+A +P++T+S+ +TM   D LQPDHFVFA +V+AC SLG 
Sbjct: 61  FDEMPNRDHVSWASILTAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGY 120

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
            RLGKQVHA F+LS FCDD+VVKSSL+DMY KCG P++ARAVFDSI  KNSVSWT+M+S 
Sbjct: 121 LRLGKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISG 180

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           YARSGRK +AM++F QAPVRNLF WTAL+SGL+QS + I +F  F EMRREG+DIVDPLV
Sbjct: 181 YARSGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLV 240

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           LSS+VG CAN A+LELGKQIHGLVIALG+ESCLFISNA+VDMYAKCSDI+AAKDIF RM 
Sbjct: 241 LSSVVGGCANLALLELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMP 300

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
           RKDV+SWTSIIVGTAQHG+AEE L LYDEMV + +KPNEVTFVGL+YACSH GLV +GR+
Sbjct: 301 RKDVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRE 360

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           LF+SM  DY I PSLQHYTCLLDLLSRSGHLDEAENL+  +PF+PDEPTWA+LLSAC  H
Sbjct: 361 LFRSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRH 420

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
            N EMG R+A+ +L LKPEDPS+YILLSNVYA A MW  VSKVRKLMS MEV+KEPGYS 
Sbjct: 421 NNLEMGVRIADRVLDLKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYSS 480

Query: 481 IEFGKGSHIFYAGET-SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL 539
           I+FGK S +F+AGE+  HP+K+EI  LL +LDAEM++RGYVP+TS VL+D+EQ+EKE+QL
Sbjct: 481 IDFGKDSQVFHAGESCDHPMKNEICNLLKDLDAEMRKRGYVPNTSFVLYDIEQQEKEKQL 540

Query: 540 FWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
           FWHSERLAVAYGLLK+VPGT++R+VKNLR+CGDCH V+K IS I KREI+VRDATRYHHF
Sbjct: 541 FWHSERLAVAYGLLKAVPGTIIRIVKNLRICGDCHNVLKFISDIVKREIMVRDATRYHHF 600

Query: 600 KDGKCSCNDFW 610
           K+GKCSCNDFW
Sbjct: 601 KEGKCSCNDFW 611


>gi|225460265|ref|XP_002278647.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Vitis vinifera]
          Length = 610

 Score =  943 bits (2438), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 445/610 (72%), Positives = 511/610 (83%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           M  SH +++L+ CARHQ     K LH  IIK G+ Q   L N LI+ YGKC L+Q A +L
Sbjct: 1   MCYSHLVYQLQACARHQSPPIGKKLHCHIIKTGIDQCKSLSNNLINMYGKCGLIQDALNL 60

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
             ++P RD +SWASILTA NQANLP  T+S+F  M   D LQPDH+VFA LVKAC  LGA
Sbjct: 61  FNQLPHRDPISWASILTANNQANLPHLTLSMFPAMFKQDGLQPDHYVFACLVKACAILGA 120

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
            + GKQVHA F++SP  DDDVVKSSLVDMYAKCGLP+  R VFDSI  KNS+SWTAM+S 
Sbjct: 121 MKQGKQVHATFIVSPVSDDDVVKSSLVDMYAKCGLPDIGRVVFDSISSKNSISWTAMISG 180

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           YA+SGRK DA+++F++ PV+NL  WTAL+SGLVQS N +D+FY F+EMR +G+DIVDP +
Sbjct: 181 YAQSGRKLDAIQLFQKMPVKNLLSWTALISGLVQSGNWVDSFYLFMEMRSKGIDIVDPFI 240

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           LSSI+GA AN AVL LGKQIH LVI LGYES LF+SNA+VDMYAKCSD++AAK IFGRM 
Sbjct: 241 LSSIIGASANLAVLGLGKQIHCLVILLGYESSLFVSNALVDMYAKCSDVLAAKKIFGRMV 300

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
           ++D+VSWTSIIVGTAQHG AEE L+LY+ M+S G+KPNEVTFVGLIYACSHVGLV KGR 
Sbjct: 301 QRDIVSWTSIIVGTAQHGLAEEALSLYNRMLSTGLKPNEVTFVGLIYACSHVGLVSKGRY 360

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            F SMI+DYGI PSLQHYTCLLDLLSRSGHL+EAENLIKAMPF+PDE TWAALLSAC HH
Sbjct: 361 FFNSMIKDYGINPSLQHYTCLLDLLSRSGHLEEAENLIKAMPFKPDEATWAALLSACNHH 420

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
           RNT +G RVA+HLLSLKPEDPS+YILLSN+YASAAMW+ VSKVR+LM+ MEVKKEPGYS 
Sbjct: 421 RNTLIGIRVADHLLSLKPEDPSTYILLSNIYASAAMWESVSKVRRLMAAMEVKKEPGYSC 480

Query: 481 IEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLF 540
           I  GK S +F AGETSHP K+EIF LL ELDAEMK+RGY+PDTSSVLHD+EQ+EKERQLF
Sbjct: 481 IVLGKESQVFLAGETSHPAKEEIFGLLEELDAEMKKRGYIPDTSSVLHDLEQQEKERQLF 540

Query: 541 WHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFK 600
           WHSERLAVAYGLLK +PG VL +VKNLRVCGDCH V+K IS I KREIVVRDA RYHHFK
Sbjct: 541 WHSERLAVAYGLLKGIPGMVLHIVKNLRVCGDCHTVLKFISIIVKREIVVRDANRYHHFK 600

Query: 601 DGKCSCNDFW 610
           DGKCSCN+FW
Sbjct: 601 DGKCSCNNFW 610


>gi|356538057|ref|XP_003537521.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Glycine max]
          Length = 611

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/612 (71%), Positives = 505/612 (82%), Gaps = 3/612 (0%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           M ++  L      A  Q  L  K LHAQIIK GL+Q+ P+PNTL++AYGKC L+Q A  L
Sbjct: 1   MSLAQSLQSQLCSAARQSPLLAKKLHAQIIKAGLNQHEPIPNTLLNAYGKCGLIQDALQL 60

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
            + +P+RD V+WAS+LTA N +N P + +SI  ++L+     PDHFVFASLVKAC +LG 
Sbjct: 61  FDALPRRDPVAWASLLTACNLSNRPHRALSISRSLLS-TGFHPDHFVFASLVKACANLGV 119

Query: 121 --TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAML 178
              + GKQVHA F LSPF DDDVVKSSL+DMYAK GLP+  RAVFDSI   NS+SWT M+
Sbjct: 120 LHVKQGKQVHARFFLSPFSDDDVVKSSLIDMYAKFGLPDYGRAVFDSISSLNSISWTTMI 179

Query: 179 SAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238
           S YARSGRK +A  +F Q P RNLF WTAL+SGLVQS N +DAF+ F+EMR EG+ + DP
Sbjct: 180 SGYARSGRKFEAFRLFRQTPYRNLFAWTALISGLVQSGNGVDAFHLFVEMRHEGISVTDP 239

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
           LVLSS+VGACAN A+ ELGKQ+HG+VI LGYESCLFISNA++DMYAKCSD++AAK IF  
Sbjct: 240 LVLSSVVGACANLALWELGKQMHGVVITLGYESCLFISNALIDMYAKCSDLVAAKYIFCE 299

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
           M RKDVVSWTSIIVGTAQHGQAEE LALYDEMV AGVKPNEVTFVGLI+ACSH GLV KG
Sbjct: 300 MCRKDVVSWTSIIVGTAQHGQAEEALALYDEMVLAGVKPNEVTFVGLIHACSHAGLVSKG 359

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
           R LF++M+ED+GI+PSLQHYTCLLDL SRSGHLDEAENLI+ MP  PDEPTWAALLS+CK
Sbjct: 360 RTLFRTMVEDHGISPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVNPDEPTWAALLSSCK 419

Query: 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGY 478
            H NT+M  R+A+HLL+LKPEDPSSYILLSN+YA A MW+ VSKVRKLM  +E KK PGY
Sbjct: 420 RHGNTQMAVRIADHLLNLKPEDPSSYILLSNIYAGAGMWEDVSKVRKLMMTLEAKKAPGY 479

Query: 479 SYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQ 538
           S I+ GKGSH+FYAGETSHP++DEI  L+ ELD EM++RGY PDTSSVLHDM+Q+EKERQ
Sbjct: 480 SCIDLGKGSHVFYAGETSHPMRDEIIGLMRELDEEMRKRGYAPDTSSVLHDMDQQEKERQ 539

Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
           LFWHSERLAVAYGLLK+VPGTV+R+VKNLRVCGDCH V+K+IS IT REI VRDA RYHH
Sbjct: 540 LFWHSERLAVAYGLLKAVPGTVIRIVKNLRVCGDCHTVLKLISAITNREIYVRDAKRYHH 599

Query: 599 FKDGKCSCNDFW 610
           FKDG CSCNDFW
Sbjct: 600 FKDGNCSCNDFW 611


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  903 bits (2333), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/590 (72%), Positives = 499/590 (84%), Gaps = 3/590 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LHAQIIK GL+ + P P TLIDAYGKC L++ A  L + +PQ+DHV+WA++L+A N +
Sbjct: 28  KKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACNLS 87

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT--RLGKQVHACFVLSPFCDDD 140
           NLP K  SI   +L  + LQPDHFVF+SL+KAC +LG+   +LGKQ+HA F+LSPF +DD
Sbjct: 88  NLPHKAFSISLPILH-EGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFEDD 146

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           VVKSSLVDMYAK  LP+  RAVFDSI   +S+SWTAM+S YARSGRK +A+E+F ++P +
Sbjct: 147 VVKSSLVDMYAKFELPDYGRAVFDSIFELSSISWTAMISGYARSGRKLEALELFRESPFK 206

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           NL+ WTAL+SGLVQS N  DA Y F+EMRREGV I DPLVLSS+VGACAN AV ELGKQ+
Sbjct: 207 NLYAWTALISGLVQSGNANDALYLFVEMRREGVSIADPLVLSSVVGACANSAVRELGKQV 266

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H +VI LGYESCLFISNA+VDMYAKCSD++AAK IF  MRRKDVVSWTSIIVGTAQHG A
Sbjct: 267 HCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLA 326

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           EE L LYD+MV AGVKPNEVTFVGLIYACSHVGLV KGR LFKSM+ED+GI PSLQHYTC
Sbjct: 327 EEALTLYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMVEDFGIRPSLQHYTC 386

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           LLDL SRSGHLDEAENLI+ MP +PDEPTWAALLSACKHH NT+M  R+A+HLL LKPED
Sbjct: 387 LLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHGNTKMAVRIADHLLDLKPED 446

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
           PSSYILLSN+YA A MW++VS VRKLM+V EVKK PGYS ++ G+   +F+AGE S P+K
Sbjct: 447 PSSYILLSNIYAGAGMWENVSMVRKLMAVKEVKKVPGYSCVDLGREFQVFHAGEASQPMK 506

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
           DEI  L+T+LD+EM+RRGYVPDTSSVL DM+Q+EKERQLFWHSERLA+AYGLLK+VPGT 
Sbjct: 507 DEILGLMTKLDSEMRRRGYVPDTSSVLLDMDQQEKERQLFWHSERLALAYGLLKAVPGTT 566

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +R+VKNLRVCGDCH V+K+IS IT REI VRD  RYHHFKDGKCSCNDFW
Sbjct: 567 IRIVKNLRVCGDCHTVLKLISAITSREIYVRDVKRYHHFKDGKCSCNDFW 616



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 13/188 (6%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA   +    K +H  +I LG      + N L+D Y KC  V  A ++  EM ++D VSW
Sbjct: 254 CANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVAAKYIFCEMRRKDVVSW 313

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            SI+    Q  L ++ ++++  M+ L  ++P+   F  L+ AC  +G    G+ +    V
Sbjct: 314 TSIIVGTAQHGLAEEALTLYDDMV-LAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMV 372

Query: 133 LSPFCDDDVVKSS------LVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSG 185
                +D  ++ S      L+D++++ G  + A  +  ++ +K +  +W A+LSA    G
Sbjct: 373 -----EDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWAALLSACKHHG 427

Query: 186 RKKDAMEI 193
             K A+ I
Sbjct: 428 NTKMAVRI 435



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 34/209 (16%)

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           + K++HA  + S          +L+D Y KCGL  +A  +FD++  ++ V+W  +LSA  
Sbjct: 26  IAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACN 85

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
            S     A  I                                + +  EG+   D  V S
Sbjct: 86  LSNLPHKAFSI-------------------------------SLPILHEGLQ-PDHFVFS 113

Query: 243 SIVGACANFAV--LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           S++ ACAN     ++LGKQ+H   +   +     + +++VDMYAK       + +F  + 
Sbjct: 114 SLIKACANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAVFDSIF 173

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDE 329
               +SWT++I G A+ G+  E L L+ E
Sbjct: 174 ELSSISWTAMISGYARSGRKLEALELFRE 202



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 43/198 (21%)

Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
           + K++H  +I  G          ++D Y KC  +  A  +F  + ++D V+W +++    
Sbjct: 26  IAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLKDALKLFDALPQQDHVAWATVLSACN 85

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV----GK-------------- 357
                 +  ++   ++  G++P+   F  LI AC+++G V    GK              
Sbjct: 86  LSNLPHKAFSISLPILHEGLQPDHFVFSSLIKACANLGSVHVKLGKQLHARFLLSPFFED 145

Query: 358 -------------------GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
                              GR +F S+ E   I+     +T ++   +RSG   EA  L 
Sbjct: 146 DVVKSSLVDMYAKFELPDYGRAVFDSIFELSSIS-----WTAMISGYARSGRKLEALELF 200

Query: 399 KAMPFEPDEPTWAALLSA 416
           +  PF+ +   W AL+S 
Sbjct: 201 RESPFK-NLYAWTALISG 217


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  872 bits (2252), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/612 (67%), Positives = 510/612 (83%), Gaps = 2/612 (0%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           M I HYLH+L++CAR++   T K LHA I+KLG+ Q  PL NTL++ YGKC    +A  +
Sbjct: 1   MLIPHYLHQLQLCARNRTLTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQV 60

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
            +EMP RDH++WAS+LTA NQANL  KT+S+FS++ +   L+PD FVF++LVKAC +LG+
Sbjct: 61  FDEMPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGS 120

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
              G+QVH  F++S + +D+VVKSSLVDMYAKCGL N+A+AVFDSI++KN++SWTAM+S 
Sbjct: 121 IDHGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSG 180

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           YA+SGRK++A+E+F   PV+NL+ WTAL+SG VQS   ++AF  F EMRRE VDI+DPLV
Sbjct: 181 YAKSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLV 240

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           LSSIVGACAN A    G+Q+HGLVIALG++SC+FISNA++DMYAKCSD+IAAKDIF RMR
Sbjct: 241 LSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMR 300

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            +DVVSWTS+IVG AQHGQAE+ LALYD+MVS GVKPNEVTFVGLIYACSHVG V KGR+
Sbjct: 301 HRDVVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRE 360

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           LF+SM +DYGI PSLQHYTCLLDLL RSG LDEAENLI  MPF PDEPTWAALLSACK  
Sbjct: 361 LFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQ 420

Query: 421 RNTEMGTRVANHLL-SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
              +MG R+A+HL+ S K +DPS+YILLSN+YASA++W  VS+ R+ +  MEV+K+PG+S
Sbjct: 421 GRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHS 480

Query: 480 YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK-RRGYVPDTSSVLHDMEQKEKERQ 538
            +E  K + +FYAGETSHPLK++IF LL +L+ EM+ R GYVPDTS +LHDM+++EKE+ 
Sbjct: 481 SVEVRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKL 540

Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
           LFWHSER AVAYGLLK+VPGT +R+VKNLRVCGDCH+V+K IS IT+REI+VRDATRYHH
Sbjct: 541 LFWHSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHH 600

Query: 599 FKDGKCSCNDFW 610
           FK GKCSCNDFW
Sbjct: 601 FKGGKCSCNDFW 612


>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
          Length = 686

 Score =  815 bits (2104), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 389/591 (65%), Positives = 480/591 (81%), Gaps = 16/591 (2%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           T K LHA I+KLG+ Q  PL NTL++ YGKC    +A  + +EMP RDH++WAS+LTA N
Sbjct: 89  TAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALN 148

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           QANL  KT+S+FS++ +   L+PD FVF++LVKAC +LG+   G+QVH  F++S + +D+
Sbjct: 149 QANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYANDE 208

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           VVKSSLVDMYAKCGL N+A+AVFDSI++KN++SWTAM+S YA+SGRK++A+E+F   PV+
Sbjct: 209 VVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVK 268

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           NL+ WTAL+SG VQS   ++AF  F EMRRE VDI+DPLVLSSIVGACAN A    G+Q+
Sbjct: 269 NLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQV 328

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG              NA++DMYAKCSD+IAAKDIF RMR +DVVSWTS+IVG AQHGQA
Sbjct: 329 HG--------------NALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQA 374

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           E+ LALYD+MVS GVKPNEVTFVGLIYACSHVG V KGR+LF+SM +DYGI PSLQHYTC
Sbjct: 375 EKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTC 434

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL-SLKPE 439
           LLDLL RSG LDEAENLI  MPF PDEPTWAALLSACK     +MG R+A+HL+ S K +
Sbjct: 435 LLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLK 494

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           DPS+YILLSN+YASA++W  VS+ R+ +  MEV+K+PG+S +E  K + +FYAGETSHPL
Sbjct: 495 DPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVEVRKETEVFYAGETSHPL 554

Query: 500 KDEIFELLTELDAEMK-RRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
           K++IF LL +L+ EM+ R GYVPDTS +LHDM+++EKE+ LFWHSER AVAYGLLK+VPG
Sbjct: 555 KEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFWHSERSAVAYGLLKAVPG 614

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           T +R+VKNLRVCGDCH+V+K IS IT+REI+VRDATRYHHFK GKCSCNDF
Sbjct: 615 TPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKGGKCSCNDF 665



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 87/165 (52%), Gaps = 5/165 (3%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L   K +H  ++ LG   C  ++N +V++Y KC     A  +F  M  +D ++W S++  
Sbjct: 87  LTTAKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTA 146

Query: 314 TAQHGQAEETL-ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF-KSMIEDYGI 371
             Q   + +TL        S+G++P++  F  L+ AC+++G +  GR++    ++ +Y  
Sbjct: 147 LNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYAN 206

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
              ++  + L+D+ ++ G L+ A+ +  ++  + +  +W A++S 
Sbjct: 207 DEVVK--SSLVDMYAKCGLLNSAKAVFDSIRVK-NTISWTAMVSG 248


>gi|297800868|ref|XP_002868318.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314154|gb|EFH44577.1| hypothetical protein ARALYDRAFT_330113 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  806 bits (2081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/548 (69%), Positives = 466/548 (85%), Gaps = 2/548 (0%)

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           MP RDH++WAS+LTA NQANL  KT+ +FS++ +   L+PD FVF++LVKAC +LG+ +L
Sbjct: 1   MPHRDHIAWASVLTALNQANLSGKTLWVFSSVGSSSGLRPDDFVFSALVKACANLGSIKL 60

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           GKQVH  F++S + +DDVVKSSLVDMYAKC L + A+AVFDSI++KN++SWTAM+S YA+
Sbjct: 61  GKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNTISWTAMVSGYAK 120

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           SGRK++A+E+F + PV+NL+ WTAL+SG VQS   ++AF  F EMRRE VDI+DPLVLSS
Sbjct: 121 SGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSS 180

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           IVGACAN A    G+Q+HGLVIALG++SC+FISNA++DMYAKCSD+IAAKDIF RMR +D
Sbjct: 181 IVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRD 240

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           VVSWTS+IVG AQHGQAE+ LALYDEMVS GVKPNEVTFVGLIYACSHVG V KGR+LF+
Sbjct: 241 VVSWTSLIVGMAQHGQAEKALALYDEMVSHGVKPNEVTFVGLIYACSHVGFVAKGRELFQ 300

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
           SM +DYGI PSLQHYTCLLDLL RSG LDEAENLI  MPF PDEPTWAALLSACK     
Sbjct: 301 SMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGQG 360

Query: 424 EMGTRVANHLL-SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
           +MG R+A+HL+ S KP+DPS+YILLSN+YASA++W  VS+ R+ +  MEV+K+PGYS +E
Sbjct: 361 QMGVRIADHLVSSFKPKDPSTYILLSNIYASASLWGKVSEARRKLGDMEVRKDPGYSSVE 420

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMK-RRGYVPDTSSVLHDMEQKEKERQLFW 541
             K + +FYAGETSH LK++IF LL +L+ EM+ R GYVPDTS +LHDM+++EKE+ LFW
Sbjct: 421 VRKETEVFYAGETSHALKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFW 480

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSER AVAYGLLK+VPGT +R+VKNLRVCGDCH+V+K IS IT+REI+VRDATRYHHFK 
Sbjct: 481 HSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKG 540

Query: 602 GKCSCNDF 609
           GKCSCNDF
Sbjct: 541 GKCSCNDF 548



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/400 (21%), Positives = 177/400 (44%), Gaps = 84/400 (21%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ CA        K +H   I         + ++L+D Y KC L+  A  + + +  ++ 
Sbjct: 49  VKACANLGSIKLGKQVHCHFIVSEYSNDDVVKSSLVDMYAKCRLLDCAKAVFDSIRVKNT 108

Query: 70  VSWASILTAYNQAN-----------LPQKTI--------------------SIFSTML-- 96
           +SW ++++ Y ++            LP K +                    S+F+ M   
Sbjct: 109 ISWTAMVSGYAKSGRKEEALELFRRLPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRE 168

Query: 97  ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP 156
            +D L P   V +S+V AC +L A+  G+QVH   +   F     + ++L+DMYAKC   
Sbjct: 169 RVDILDP--LVLSSIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDV 226

Query: 157 NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
             A+ +F  ++ ++ VSWT+++   A+ G+ + A+ ++++           +VS  V+  
Sbjct: 227 IAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDE-----------MVSHGVKP- 274

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI-------HGLVIALGY 269
           NE+    +F+                 ++ AC++   +  G+++       +G+  +L +
Sbjct: 275 NEV----TFV----------------GLIYACSHVGFVAKGRELFQSMTKDYGIRPSLQH 314

Query: 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAEETLALYD 328
            +CL      +D+  +   +  A+++   M    D  +W +++    + GQ +  + + D
Sbjct: 315 YTCL------LDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGQGQMGVRIAD 368

Query: 329 EMVSAGVKPNEVTFVGL--IYACSHV-GLVGKGRKLFKSM 365
            +VS+    +  T++ L  IYA + + G V + R+    M
Sbjct: 369 HLVSSFKPKDPSTYILLSNIYASASLWGKVSEARRKLGDM 408



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/246 (23%), Positives = 110/246 (44%), Gaps = 33/246 (13%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA    ++  + +H  +I LG      + N LID Y KC  V  A  +   M  RD VSW
Sbjct: 185 CANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSW 244

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            S++    Q    +K ++++  M++   ++P+   F  L+ AC  +G    G++     +
Sbjct: 245 TSLIVGMAQHGQAEKALALYDEMVS-HGVKPNEVTFVGLIYACSHVGFVAKGRE-----L 298

Query: 133 LSPFCDDDVVKSS------LVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARSG 185
                 D  ++ S      L+D+  + GL + A  +  ++    +  +W A+LSA  R G
Sbjct: 299 FQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQG 358

Query: 186 RKKDAMEIFE--------QAP-----VRNLFLWTALVSGLVQSRNEI-------DAFYSF 225
           + +  + I +        + P     + N++   +L   + ++R ++       D  YS 
Sbjct: 359 QGQMGVRIADHLVSSFKPKDPSTYILLSNIYASASLWGKVSEARRKLGDMEVRKDPGYSS 418

Query: 226 IEMRRE 231
           +E+R+E
Sbjct: 419 VEVRKE 424


>gi|7488184|pir||E71401 probable selenium-binding protein - Arabidopsis thaliana
          Length = 1070

 Score =  767 bits (1980), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/548 (67%), Positives = 452/548 (82%), Gaps = 16/548 (2%)

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           MP RDH++WAS+LTA NQANL  KT+S+FS++ +   L+PD FVF++LVKAC +LG+   
Sbjct: 1   MPHRDHIAWASVLTALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDH 60

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G+QVH  F++S + +D+VVKSSLVDMYAKCGL N+A+AVFDSI++KN++SWTAM+S YA+
Sbjct: 61  GRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAK 120

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           SGRK++A+E+F   PV+NL+ WTAL+SG VQS   ++AF  F EMRRE VDI+DPLVLSS
Sbjct: 121 SGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSS 180

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           IVGACAN A    G+Q+HG              NA++DMYAKCSD+IAAKDIF RMR +D
Sbjct: 181 IVGACANLAASIAGRQVHG--------------NALIDMYAKCSDVIAAKDIFSRMRHRD 226

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           VVSWTS+IVG AQHGQAE+ LALYD+MVS GVKPNEVTFVGLIYACSHVG V KGR+LF+
Sbjct: 227 VVSWTSLIVGMAQHGQAEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQ 286

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
           SM +DYGI PSLQHYTCLLDLL RSG LDEAENLI  MPF PDEPTWAALLSACK     
Sbjct: 287 SMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRG 346

Query: 424 EMGTRVANHLL-SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
           +MG R+A+HL+ S K +DPS+YILLSN+YASA++W  VS+ R+ +  MEV+K+PG+S +E
Sbjct: 347 QMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSVE 406

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMK-RRGYVPDTSSVLHDMEQKEKERQLFW 541
             K + +FYAGETSHPLK++IF LL +L+ EM+ R GYVPDTS +LHDM+++EKE+ LFW
Sbjct: 407 VRKETEVFYAGETSHPLKEDIFRLLKKLEEEMRIRNGYVPDTSWILHDMDEQEKEKLLFW 466

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSER AVAYGLLK+VPGT +R+VKNLRVCGDCH+V+K IS IT+REI+VRDATRYHHFK 
Sbjct: 467 HSERSAVAYGLLKAVPGTPIRIVKNLRVCGDCHVVLKHISEITEREIIVRDATRYHHFKG 526

Query: 602 GKCSCNDF 609
           GKCSCNDF
Sbjct: 527 GKCSCNDF 534



 Score = 77.8 bits (190), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/368 (21%), Positives = 165/368 (44%), Gaps = 98/368 (26%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN-----------LPQKTI- 89
           ++L+D Y KC L+  A  + + +  ++ +SW ++++ Y ++            LP K + 
Sbjct: 81  SSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPVKNLY 140

Query: 90  -------------------SIFSTML--ALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
                              S+F+ M    +D L P   V +S+V AC +L A+  G+QVH
Sbjct: 141 SWTALISGFVQSGKGLEAFSVFTEMRRERVDILDP--LVLSSIVGACANLAASIAGRQVH 198

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
                          ++L+DMYAKC     A+ +F  ++ ++ VSWT+++   A+ G+ +
Sbjct: 199 G--------------NALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAE 244

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            A+ +++            +VS  V+  NE+    +F+                 ++ AC
Sbjct: 245 KALALYDD-----------MVSHGVKP-NEV----TFV----------------GLIYAC 272

Query: 249 ANFAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR- 300
           ++   +E G+++       +G+  +L + +CL      +D+  +   +  A+++   M  
Sbjct: 273 SHVGFVEKGRELFQSMTKDYGIRPSLQHYTCL------LDLLGRSGLLDEAENLIHTMPF 326

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGL--IYACSHV-GLVGK 357
             D  +W +++    + G+ +  + + D +VS+    +  T++ L  IYA + + G V +
Sbjct: 327 PPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIYASASLWGKVSE 386

Query: 358 GRKLFKSM 365
            R+    M
Sbjct: 387 ARRKLGEM 394


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/590 (56%), Positives = 441/590 (74%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
            V+ +HA+I+K GL  + P P  L+ AY K  L+  A HL +E P+RD   ++S+LTA +
Sbjct: 21  AVRGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVS 80

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
            +  P+  + I   ML+ D L PDHFV +S+      L + RLG+Q+HA FV+SP+  DD
Sbjct: 81  HSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDD 140

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           VVKSSLVDMY KCG P++ R VFDS+  KNSV WTA++S YA +GR ++A+++F   P R
Sbjct: 141 VVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGR 200

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           NLF WTAL+SGLV +   + A   F+EMRR+GV I D  VLS ++G  A+ A   LG+Q+
Sbjct: 201 NLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQL 260

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG  + LG+ S + + NA++DMY+KCSDI++A+++F  +  +DV+SWT+++VG AQHG+A
Sbjct: 261 HGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRA 320

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           EE LALYD MV AG KPNEVTFVGLIYACSH GLV KGR+LF+SM  +YGITP LQHYTC
Sbjct: 321 EEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTC 380

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
            LDLLSRSGHL EAE L+  MP+EPDE TW ALLSAC  +++ EM  R+++ LL L+P+D
Sbjct: 381 YLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKD 440

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
            S+YILLSNVYA    W  V+KVRK M  +E++KEPGYS+IE G+   +F+AGE    ++
Sbjct: 441 SSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVR 500

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
           +EI   L E+  EM++RGYVPDTSSV+HD+E+ EKE  LF HSERLAVA+GL+KS PG+V
Sbjct: 501 EEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSV 560

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +RVVKNLRVC DCH VMK+IS IT R+IVVRD++R+HHF+ GKCSC++FW
Sbjct: 561 IRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 610


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/590 (56%), Positives = 441/590 (74%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
            V+ +HA+I+K GL  + P P  L+ AY K  L+  A HL +E P+RD   ++S+LTA +
Sbjct: 103 AVRGMHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVS 162

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
            +  P+  + I   ML+ D L PDHFV +S+      L + RLG+Q+HA FV+SP+  DD
Sbjct: 163 HSASPELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVVSPYNGDD 222

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           VVKSSLVDMY KCG P++ R VFDS+  KNSV WTA++S YA +GR ++A+++F   P R
Sbjct: 223 VVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGR 282

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           NLF WTAL+SGLV +   + A   F+EMRR+GV I D  VLS ++G  A+ A   LG+Q+
Sbjct: 283 NLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQL 342

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG  + LG+ S + + NA++DMY+KCSDI++A+++F  +  +DV+SWT+++VG AQHG+A
Sbjct: 343 HGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRA 402

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           EE LALYD MV AG KPNEVTFVGLIYACSH GLV KGR+LF+SM  +YGITP LQHYTC
Sbjct: 403 EEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTC 462

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
            LDLLSRSGHL EAE L+  MP+EPDE TW ALLSAC  +++ EM  R+++ LL L+P+D
Sbjct: 463 YLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKD 522

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
            S+YILLSNVYA    W  V+KVRK M  +E++KEPGYS+IE G+   +F+AGE    ++
Sbjct: 523 SSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVR 582

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
           +EI   L E+  EM++RGYVPDTSSV+HD+E+ EKE  LF HSERLAVA+GL+KS PG+V
Sbjct: 583 EEIMVFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSV 642

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +RVVKNLRVC DCH VMK+IS IT R+IVVRD++R+HHF+ GKCSC++FW
Sbjct: 643 IRVVKNLRVCVDCHTVMKLISEITHRKIVVRDSSRFHHFEGGKCSCSEFW 692


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  705 bits (1820), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/590 (56%), Positives = 433/590 (73%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           +++  HA++IK GL Q+ P P  L+ AY K  L+     L +E P+RD   ++S+L A +
Sbjct: 21  SLRRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVS 80

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
            +  P+  + +   ML+ D L+PDHFV AS+  A   L +  LGKQ+H  FV SP+  DD
Sbjct: 81  HSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYSSDD 140

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           VVKSSL+DMY KCG+P++AR VFDSI  KNSV WTA++S Y  +GR  +A+E+F   P R
Sbjct: 141 VVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMPGR 200

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
            LF WTAL+SG V+S   + A   F++MRR+GV I D  VLSS +G  A+ A   LG+Q+
Sbjct: 201 TLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGRQL 260

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H L + LG+ S + + NA+VDMY+KCSDI +A+++F  +  +D++SWT+++VG AQHG+A
Sbjct: 261 HSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHGRA 320

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           EE  +LYD MV AGVKPNEVTFVGLIYACSH GLV KGR+LF SM  +YGI P LQHYTC
Sbjct: 321 EEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTC 380

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
            LDLLSRSGHL EAE LI  MP+ PDE TWA+LLSACK + N EM  RVA++LL L+P+ 
Sbjct: 381 YLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRPKY 440

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
           PS+Y+LLSNVYA    W  V  VRKLM+ ME++KEPGYS+IE G+   +F+AGE    L+
Sbjct: 441 PSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWIEVGREFRLFHAGEVPIDLR 500

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
           +EI   L EL +EM++RGYVPDTSSV+HD+E+ EKE  L  HSERLAVA+G+L+S  G+V
Sbjct: 501 EEILGFLEELVSEMRQRGYVPDTSSVMHDLEEHEKEHHLCLHSERLAVAFGILRSPLGSV 560

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +RVVKNLRVC DCH VMK IS I +R+I+VRDA+R+HHF+ GKCSC++FW
Sbjct: 561 IRVVKNLRVCNDCHTVMKFISEIFQRKIIVRDASRFHHFEGGKCSCSEFW 610


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/590 (55%), Positives = 442/590 (74%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
            V+ +HA+++K GL      P  L+ AY +  L+  A    ++ P+RD   ++++L A +
Sbjct: 19  AVRRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVS 78

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
            ++ P+  + +   ML+ D L+PDHFV ASL  A G L + RLG+Q+HA F  SP+  D+
Sbjct: 79  HSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADN 138

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           VVKSSL+DMY KCG+P +AR VFDSI +KNSV WTA++S YA +G   +A+++F+  P  
Sbjct: 139 VVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAH 198

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
            LF WTAL+SG V++ N   A   F+EMRR+ + I D  VL++++G  A+ A L LG+Q+
Sbjct: 199 GLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGRQL 258

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG V+ LG+ S + + NA+VDMY+KCSDI +A+++F  +  +DV+SWT+I+VG AQHG+A
Sbjct: 259 HGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHGRA 318

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           EE  ALY+ M+ AG+KPNEVTFVGLIYACSH GLV KGR+LF SM  +YG+ P +QHYTC
Sbjct: 319 EEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHYTC 378

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
            LDLLSRSG+L EAE LI  MP+EPDE TW ALLSACK H +T+M  RVA++LL L+P+D
Sbjct: 379 YLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELRPKD 438

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
           PS+YILLSNVYA    W  V+KVRK+M+ ME++K PGYS++E G+ S IF+AGE    + 
Sbjct: 439 PSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRESRIFHAGEVPLDVG 498

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
           +EI   L EL +EM++RGYVPDTSSV+HD+E+ EKE+ LF HSERLAVA+G+LKS PG+V
Sbjct: 499 EEITCFLEELVSEMRKRGYVPDTSSVMHDLEEHEKEQHLFVHSERLAVAFGILKSPPGSV 558

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +RVVKNLRVCGDCH VMK IS I +R+I+VRDA+R+HHF+DG CSC++FW
Sbjct: 559 IRVVKNLRVCGDCHTVMKFISAIAQRKIIVRDASRFHHFEDGNCSCSEFW 608



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 104/251 (41%), Gaps = 37/251 (14%)

Query: 119 GATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK-CGLPNNARAVFDSIKLKNSVSWTAM 177
           G  R  ++VHA  +     D     + LV  YA+ C LP+  RA                
Sbjct: 15  GLPRAVRRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRA---------------- 58

Query: 178 LSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD 237
                           F+ AP R+L L++AL++ +  S +          M  +     D
Sbjct: 59  ----------------FDDAPRRDLHLYSALLAAVSHSSDPELVLPLLRRMLSDDALRPD 102

Query: 238 PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297
             VL+S+  A      L LG+Q+H    A  Y +   + ++++DMY KC     A+ +F 
Sbjct: 103 HFVLASLASAAGRLRSLRLGRQLHAHFAASPYSADNVVKSSLIDMYCKCGVPQDARKVFD 162

Query: 298 RMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357
            +  K+ V WT++I G A +G   E L L+  M + G+        G + A ++ G +G 
Sbjct: 163 SIGVKNSVVWTALISGYASNGCTGEALDLFQSMPAHGLFTWTALISGFVKAGNYTGAMG- 221

Query: 358 GRKLFKSMIED 368
              LF  M  D
Sbjct: 222 ---LFVEMRRD 229


>gi|242090555|ref|XP_002441110.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
 gi|241946395|gb|EES19540.1| hypothetical protein SORBIDRAFT_09g020580 [Sorghum bicolor]
          Length = 516

 Score =  668 bits (1724), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/516 (61%), Positives = 403/516 (78%)

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
           ML+ D L+PDHFV ASL  A   L + RLG+Q+HA FV SP+  DDVVKSSL+DMY KCG
Sbjct: 1   MLSDDALRPDHFVLASLASAAARLRSLRLGRQLHAHFVASPYSADDVVKSSLIDMYCKCG 60

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
           +P +AR VFDSI +KN V WTA++S YA +G   +A+++F   P R LF WTAL+SG V+
Sbjct: 61  VPEDARKVFDSIGVKNGVVWTALVSGYASNGCTGEAIDLFRSMPERGLFAWTALISGFVK 120

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF 274
           + N   A   F+EMRR+GV I D  VL+++VG  A  A L LG+Q+HG  I LG+ S + 
Sbjct: 121 AGNNTGAVGLFVEMRRDGVRIDDAFVLATVVGGAAELAALVLGRQLHGFAITLGFLSSMI 180

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
           + NA+VDMY+KCSDI +A+++FG +  +DVVSWT+I+VG AQHG+ EE LALYD M+ AG
Sbjct: 181 VGNALVDMYSKCSDIHSAREVFGGIIVRDVVSWTTILVGEAQHGRVEEVLALYDRMLLAG 240

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
           +KPNEVTFVGLIYACSH GLV KGR+LF SM  +YGI P LQHYTC LDLLSRSG+L EA
Sbjct: 241 MKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGIKPGLQHYTCYLDLLSRSGYLSEA 300

Query: 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454
           E LI  MP+EPDE +W ALLSACK H +T+M  RVA++LL L+P+DPS+YILLSNVYA  
Sbjct: 301 EELITTMPYEPDEASWGALLSACKKHNDTQMCLRVADNLLELRPKDPSTYILLSNVYAVN 360

Query: 455 AMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEM 514
             W  V+KVRK+M+ ME++KEPGYS+IE G+ S +F+AGE    + +EI   L EL +EM
Sbjct: 361 CKWDSVAKVRKIMAEMEIRKEPGYSWIEAGRESRMFHAGEVPLDIGEEITRFLEELVSEM 420

Query: 515 KRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCH 574
           ++RGYVPDTSSV+HD+E+ EKE+ LF HSERLAVA+G+LKS PG+V+RVVKNLRVCGDCH
Sbjct: 421 RKRGYVPDTSSVMHDLEENEKEQHLFLHSERLAVAFGILKSPPGSVIRVVKNLRVCGDCH 480

Query: 575 IVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            VMK IS I +R+I+VRDA+R+HHF+DG CSC++FW
Sbjct: 481 TVMKFISEIAQRKIIVRDASRFHHFEDGNCSCSEFW 516



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 81/384 (21%), Positives = 161/384 (41%), Gaps = 79/384 (20%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHH----------------------- 59
           + LHA  +         + ++LID Y KC + + A                         
Sbjct: 31  RQLHAHFVASPYSADDVVKSSLIDMYCKCGVPEDARKVFDSIGVKNGVVWTALVSGYASN 90

Query: 60  --------LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
                   L   MP+R   +W ++++ + +A      + +F  M        D FV A++
Sbjct: 91  GCTGEAIDLFRSMPERGLFAWTALISGFVKAGNNTGAVGLFVEMRRDGVRIDDAFVLATV 150

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           V     L A  LG+Q+H   +   F    +V ++LVDMY+KC   ++AR VF  I +++ 
Sbjct: 151 VGGAAELAALVLGRQLHGFAITLGFLSSMIVGNALVDMYSKCSDIHSAREVFGGIIVRDV 210

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           VSWT +L   A+ GR ++ + ++++           L++G+    NE+    +F+     
Sbjct: 211 VSWTTILVGEAQHGRVEEVLALYDR----------MLLAGM--KPNEV----TFV----- 249

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYA 284
                       ++ AC++  +++ G+Q+       +G+   L + +C       +D+ +
Sbjct: 250 -----------GLIYACSHAGLVQKGRQLFDSMKREYGIKPGLQHYTCY------LDLLS 292

Query: 285 KCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK-PNEVTF 342
           +   +  A+++   M    D  SW +++    +H   +  L + D ++    K P+    
Sbjct: 293 RSGYLSEAEELITTMPYEPDEASWGALLSACKKHNDTQMCLRVADNLLELRPKDPSTYIL 352

Query: 343 VGLIYACS-HVGLVGKGRKLFKSM 365
           +  +YA +     V K RK+   M
Sbjct: 353 LSNVYAVNCKWDSVAKVRKIMAEM 376


>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
          Length = 586

 Score =  646 bits (1667), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/545 (56%), Positives = 403/545 (73%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA+I+K GL  + P P  L+ AY K  L+  A HL +E P+RD   ++S+LTA + +  
Sbjct: 1   MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSAS 60

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P+  + I   ML+ D L PDHFV +S+      L + RLG+Q+HA FV SP+  DDVVKS
Sbjct: 61  PELALPILRCMLSADALHPDHFVISSVASVFARLRSRRLGRQLHAHFVASPYNGDDVVKS 120

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SLVDMY KCG P++ R VFDS+  KNSV WTA++S YA +GR ++A+++F   P RNLF 
Sbjct: 121 SLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFA 180

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           WTAL+SGLV +   + A   F+EMRR+GV I D  VLS ++GA A+ A   LG+Q+HG  
Sbjct: 181 WTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGASADLAAFVLGRQLHGSA 240

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           + LG+ S + + NA++DMY+KCSDI++A+++F  +  +DV+SWT+++VG AQHG+AEE L
Sbjct: 241 MRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEAL 300

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
           ALYD MV AG KPNEVTFVGLIYACSH GLV KGR+LF+SM  +YGITP LQHYTC LDL
Sbjct: 301 ALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDL 360

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
           LSRSGHL EAE L+  MP+EPDE TW ALLSAC  +++ EM  R+++ LL L+P+D S+Y
Sbjct: 361 LSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTY 420

Query: 445 ILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIF 504
           ILLSNVYA    W  V+KVRK M  +E++KEPGYS+IE G+   +F+AGE    +++EI 
Sbjct: 421 ILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIM 480

Query: 505 ELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVV 564
             L E+  EM++RGYVPDTSSV+HD+E+ EKE  LF HSERLAVA+GL+KS PG+V+RVV
Sbjct: 481 VFLEEMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVV 540

Query: 565 KNLRV 569
           KNLRV
Sbjct: 541 KNLRV 545



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/348 (18%), Positives = 153/348 (43%), Gaps = 77/348 (22%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHA  +    +    + ++L+D Y KC        + + M  ++ V W ++++ Y   
Sbjct: 101 RQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASN 160

Query: 83  NLPQKTISIFSTM------------------------------LALDKLQ-PDHFVFASL 111
              ++ + +F +M                              +  D ++  D FV + +
Sbjct: 161 GRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIV 220

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           + A   L A  LG+Q+H   +   F  + +V ++L+DMY+KC    +AR VF+ I  ++ 
Sbjct: 221 IGASADLAAFVLGRQLHGSAMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDV 280

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           +SWT M+   A+ GR ++A+ ++++           +++G     NE+    +F+     
Sbjct: 281 ISWTTMVVGEAQHGRAEEALALYDR----------MVLAG--AKPNEV----TFV----- 319

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYA 284
                       ++ AC++  +++ G+Q+       +G+   L + +C       +D+ +
Sbjct: 320 -----------GLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCY------LDLLS 362

Query: 285 KCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
           +   ++ A+++   M    D  +W +++    ++  AE  + + D+++
Sbjct: 363 RSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLL 410


>gi|53982660|gb|AAV25639.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 533

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 276/537 (51%), Positives = 365/537 (67%), Gaps = 33/537 (6%)

Query: 34  LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFS 93
           L  + P P  L+ AY K  L+  A HL +E P+R+   + S+L A +++   +  + +  
Sbjct: 30  LAHHTPNPAALVSAYAKSRLLLDALHLFDETPRRNIYLYFSLLAAVSRSASLELALPVLR 89

Query: 94  TMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC 153
            ML+ D L+PDHFV AS+      L + RLG+Q+H  FV+SP+  DDVVKSSLVDMY KC
Sbjct: 90  RMLSADALRPDHFVIASVASVSARLRSLRLGRQLHEHFVVSPYSGDDVVKSSLVDMYCKC 149

Query: 154 GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLV 213
           G P++AR VFDS+  KNSV WTA++S YA +GR ++A+++F   P RNLF WTAL+SGLV
Sbjct: 150 GFPDDARKVFDSMGAKNSVVWTALVSGYASNGRGEEALQLFRSMPGRNLFAWTALISGLV 209

Query: 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
           ++   + A   F+EMRR+ + I D  VLS ++G                           
Sbjct: 210 KTGESVGAVELFVEMRRDDIRIDDAFVLSIVIGGAGQ----------------------- 246

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
                     A   DI++A+++F  +  + V+SWT+++VG AQHG+AEE LALYD MV A
Sbjct: 247 ----------AVACDILSAREVFEGITFRAVISWTTMVVGEAQHGRAEEALALYDRMVLA 296

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
           G KPN+VTFVGLIYACSH GLV KGR+LF+SM  +YGITP LQHYTC LDLLSRSGHL E
Sbjct: 297 GAKPNKVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPGLQHYTCYLDLLSRSGHLLE 356

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453
           AE L+  MP+EPDE TW ALLSACK +++ EM  R+A+ LL L+P+D S+YILLSNVYA 
Sbjct: 357 AEELMTTMPYEPDEATWGALLSACKKYKDAEMCIRIADKLLELRPKDSSTYILLSNVYAV 416

Query: 454 AAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAE 513
              W  V+K RK    +E++KEP YS+IE G+   +F+AGE    +++EI   L E+  E
Sbjct: 417 NGKWDSVAKARKCTIGLEIRKEPVYSWIEAGREFRLFHAGEVPLDVREEIMGFLEEMVLE 476

Query: 514 MKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVC 570
           M++RGYVPDTSSV+HD+E+ EKE  LF HSERLAVA+GL+KS PG+V+RVVKNLRVC
Sbjct: 477 MRKRGYVPDTSSVMHDLEENEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLRVC 533


>gi|222631619|gb|EEE63751.1| hypothetical protein OsJ_18570 [Oryza sativa Japonica Group]
          Length = 565

 Score =  556 bits (1433), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/535 (51%), Positives = 363/535 (67%), Gaps = 33/535 (6%)

Query: 34  LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFS 93
           L  + P P  L+ AY K  L+  A HL +E P+R+   + S+L A +++   +  + +  
Sbjct: 63  LAHHTPNPAALVSAYAKSRLLLDALHLFDETPRRNIYLYFSLLAAVSRSASLELALPVLR 122

Query: 94  TMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC 153
            ML+ D L+PDHFV AS+      L + RLG+Q+H  FV+SP+  DDVVKSSLVDMY KC
Sbjct: 123 RMLSADALRPDHFVIASVASVSARLRSLRLGRQLHEHFVVSPYSGDDVVKSSLVDMYCKC 182

Query: 154 GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLV 213
           G P++AR VFDS+  KNSV WTA++S YA +GR ++A+++F   P RNLF WTAL+SGLV
Sbjct: 183 GFPDDARKVFDSMGAKNSVVWTALVSGYASNGRGEEALQLFRSMPGRNLFAWTALISGLV 242

Query: 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
           ++   + A   F+EMRR+ + I D  VLS ++G                           
Sbjct: 243 KTGESVGAVELFVEMRRDDIRIDDAFVLSIVIGGAGQ----------------------- 279

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
                     A   DI++A+++F  +  + V+SWT+++VG AQHG+AEE LALYD MV A
Sbjct: 280 ----------AVACDILSAREVFEGITFRAVISWTTMVVGEAQHGRAEEALALYDRMVLA 329

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
           G KPN+VTFVGLIYACSH GLV KGR+LF+SM  +YGITP LQHYTC LDLLSRSGHL E
Sbjct: 330 GAKPNKVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPGLQHYTCYLDLLSRSGHLLE 389

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453
           AE L+  MP+EPDE TW ALLSACK +++ EM  R+A+ LL L+P+D S+YILLSNVYA 
Sbjct: 390 AEELMTTMPYEPDEATWGALLSACKKYKDAEMCIRIADKLLELRPKDSSTYILLSNVYAV 449

Query: 454 AAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAE 513
              W  V+K RK    +E++KEP YS+IE G+   +F+AGE    +++EI   L E+  E
Sbjct: 450 NGKWDSVAKARKCTIGLEIRKEPVYSWIEAGREFRLFHAGEVPLDVREEIMGFLEEMVLE 509

Query: 514 MKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLR 568
           M++RGYVPDTSSV+HD+E+ EKE  LF HSERLAVA+GL+KS PG+V+RVVKNLR
Sbjct: 510 MRKRGYVPDTSSVMHDLEENEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLR 564


>gi|222616388|gb|EEE52520.1| hypothetical protein OsJ_34732 [Oryza sativa Japonica Group]
          Length = 462

 Score =  537 bits (1383), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 248/421 (58%), Positives = 323/421 (76%)

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           MY KCG P++ R VFDS+  KNSV WTA++S YA +GR ++A+++F   P RNLF WTAL
Sbjct: 1   MYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPGRNLFAWTAL 60

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
           +SGLV +   + A   F+EMRR+GV I D  VLS ++G  A+ A   LG+Q+HG  + LG
Sbjct: 61  ISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLG 120

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
           + S + + NA++DMY+KCSDI++A+++F  +  +DV+SWT+++VG AQHG+AEE LALYD
Sbjct: 121 FLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGRAEEALALYD 180

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
            MV AG KPNEVTFVGLIYACSH GLV KGR+LF+SM  +YGITP LQHYTC LDLLSRS
Sbjct: 181 RMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLSRS 240

Query: 389 GHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
           GHL EAE L+  MP+EPDE TW ALLSAC  +++ EM  R+++ LL L+P+D S+YILLS
Sbjct: 241 GHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPKDSSTYILLS 300

Query: 449 NVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLT 508
           NVYA    W  V+KVRK M  +E++KEPGYS+IE G+   +F+AGE    +++EI   L 
Sbjct: 301 NVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWIEAGREFRLFHAGEVPLDVREEIMVFLE 360

Query: 509 ELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLR 568
           E+  EM++RGYVPDTSSV+HD+E+ EKE  LF HSERLAVA+GL+KS PG+V+RVVKNLR
Sbjct: 361 EMVLEMRKRGYVPDTSSVMHDLEESEKEHHLFLHSERLAVAFGLIKSPPGSVIRVVKNLR 420

Query: 569 V 569
           V
Sbjct: 421 V 421



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 59/298 (19%), Positives = 134/298 (44%), Gaps = 46/298 (15%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
             L+  Y      + A  L   MP R+  +W ++++           + +F  M      
Sbjct: 27  TALVSGYASNGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVR 86

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             D FV + ++     L A  LG+Q+H   +   F  + +V ++L+DMY+KC    +AR 
Sbjct: 87  IDDAFVLSIVIGGSADLAAFVLGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSARE 146

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF+ I  ++ +SWT M+   A+ GR ++A+ ++++           +++G     NE+  
Sbjct: 147 VFEGITFRDVISWTTMVVGEAQHGRAEEALALYDR----------MVLAG--AKPNEV-- 192

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI-------HGLVIALGYESCLF 274
             +F+                 ++ AC++  +++ G+Q+       +G+   L + +C  
Sbjct: 193 --TFV----------------GLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYTCY- 233

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
                +D+ ++   ++ A+++   M    D  +W +++    ++  AE  + + D+++
Sbjct: 234 -----LDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLL 286



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/163 (22%), Positives = 76/163 (46%), Gaps = 9/163 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH   ++LG      + N LID Y KC  +  A  + E +  RD +SW +++    Q 
Sbjct: 110 RQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQH 169

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC----FVLSPFCD 138
              ++ ++++  M+ L   +P+   F  L+ AC   G  + G+Q+       + ++P   
Sbjct: 170 GRAEEALALYDRMV-LAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQ 228

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
                +  +D+ ++ G    A  +  ++  + +  +W A+LSA
Sbjct: 229 H---YTCYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSA 268


>gi|255559192|ref|XP_002520617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540178|gb|EEF41753.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 344

 Score =  530 bits (1364), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 253/339 (74%), Positives = 288/339 (84%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           MQISHYLH+L++C + Q  LT K LHAQIIKL L +  PLPNTL++AYGKC L+Q A+ L
Sbjct: 1   MQISHYLHQLQLCGKRQTPLTAKKLHAQIIKLSLKESEPLPNTLLNAYGKCGLLQDAYFL 60

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
            EEMPQRDHVSWASILTAYN ANLP KT+SIF TM  +DKL+PDHFV+A+LVKAC SL A
Sbjct: 61  FEEMPQRDHVSWASILTAYNLANLPNKTLSIFPTMFIVDKLEPDHFVYATLVKACASLCA 120

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
            R GKQVHA FVLSPF DDDVVKSSL+DMYAKCGLP  ARAVFDSI  KN+VSWTAM+S 
Sbjct: 121 VRQGKQVHARFVLSPFSDDDVVKSSLIDMYAKCGLPKIARAVFDSILAKNAVSWTAMISG 180

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           YA+SG K +AME+F   PV+NL+ WTAL+SGLVQS   ID  Y F+EMRREG+DI+DPLV
Sbjct: 181 YAKSGLKVEAMELFSSFPVKNLYSWTALISGLVQSGKGIDGCYLFLEMRREGIDIIDPLV 240

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           LSS+VGACAN AVLE GKQ+HGL+IALGYESCLFISNA+VDMYAKCSDI+AAK+IF RM 
Sbjct: 241 LSSVVGACANLAVLEFGKQLHGLIIALGYESCLFISNALVDMYAKCSDILAAKEIFDRMI 300

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
            KDVVSWTSIIVG AQHG+A+E L LYD+MV AGVKPNE
Sbjct: 301 YKDVVSWTSIIVGAAQHGRAKEALDLYDDMVLAGVKPNE 339


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  510 bits (1313), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 236/510 (46%), Positives = 340/510 (66%), Gaps = 1/510 (0%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           ++P+ F  +++VKAC S+ +   GKQ H   +   F  D VV+++LV MYA+CG   +A 
Sbjct: 6   VKPNQFTLSTVVKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAG 65

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            VFD +  +++ +W AM++ +A++   K A+++F +   R++  WTA+++G  Q+    +
Sbjct: 66  HVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDE 125

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
           +   F +MR+ G+   D  ++ S++ ACA+ A LELG+Q H  V+  G+   + + +A+V
Sbjct: 126 SLNVFNQMRKTGMK-SDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALV 184

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           DMYAK   +  A  +F +M +++ VSW SII G AQHG+  + + L+++M+ AG+KPNE+
Sbjct: 185 DMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEI 244

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           +FVG++ ACSH GLV +GR  F  M ++YGI P + HYTC++DLL R+G LDEAEN I  
Sbjct: 245 SFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFING 304

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           MP EPD   W ALL AC+ H NTE+  R+A HLL ++ +    Y+LLSN+YA+A  W   
Sbjct: 305 MPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQWDDA 364

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
           +KVRKLM    V K+PGYS+IE     H F AGETSHP   EI E L  L  +MK  GYV
Sbjct: 365 AKVRKLMKDRGVMKQPGYSWIEVKTIMHAFVAGETSHPQLKEIHEFLESLSRKMKAAGYV 424

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           P+ + VL D+E  EKE  L  HSE+LA+A+G++ + PGT +RV KNLRVCGDCH V+K I
Sbjct: 425 PNKNFVLQDVEDDEKELSLSHHSEKLAIAFGIINTNPGTTIRVAKNLRVCGDCHTVIKFI 484

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           S    R+IVVRDA R+HHFKDG+CSC D+W
Sbjct: 485 SLNFTRKIVVRDANRFHHFKDGRCSCGDYW 514



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 152/351 (43%), Gaps = 78/351 (22%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE------- 62
           ++ CA        K  H  IIK+G      +   L+  Y +C  ++ A H+ +       
Sbjct: 17  VKACASIASLEQGKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSERST 76

Query: 63  ------------------------EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                                   EM +RD VSW +++  Y Q     +++++F+ M   
Sbjct: 77  RTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKT 136

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
             ++ D F+  S++ AC  L A  LG+Q HA  V S F  D VV S+LVDMYAK G   +
Sbjct: 137 G-MKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMED 195

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A  VFD +  +N VSW ++++  A+ GR  DA+ +FEQ           L +G+    NE
Sbjct: 196 ACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQ----------MLQAGI--KPNE 243

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK-------QIHGLVIALGYES 271
           I    SF+                 ++ AC++  ++  G+       Q +G+V  + + +
Sbjct: 244 I----SFV----------------GVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYT 283

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAE 321
           C+      +D+  +   +  A++    M    DV  W +++     HG  E
Sbjct: 284 CM------IDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNTE 328



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 3/188 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        +  HA +++ G      + + L+D Y K   ++ A  + ++MPQR+ 
Sbjct: 149 LSACADLAALELGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNE 208

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW SI+T   Q       + +F  ML    ++P+   F  ++ AC   G    G+    
Sbjct: 209 VSWNSIITGCAQHGRGNDAVLLFEQMLQAG-IKPNEISFVGVLSACSHTGLVNEGRGYFN 267

Query: 130 CFVLSPFCDDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGRK 187
               +     DV   + ++D+  + G  + A    + + ++  VS W A+L A    G  
Sbjct: 268 LMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGACRIHGNT 327

Query: 188 KDAMEIFE 195
           + A  I E
Sbjct: 328 ELAKRIAE 335



 Score = 45.4 bits (106), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389
           MV  GVKPN+ T   ++ AC+ +  + +G++    +I+  G    +   T L+ + +R G
Sbjct: 1   MVGKGVKPNQFTLSTVVKACASIASLEQGKQAHNYIIK-MGFESDVVVQTALVHMYARCG 59

Query: 390 HLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
            L++A ++   M  E    TW A+++   H +N +M
Sbjct: 60  SLEDAGHVFDKMS-ERSTRTWNAMITG--HAQNRDM 92


>gi|218196813|gb|EEC79240.1| hypothetical protein OsI_19991 [Oryza sativa Indica Group]
          Length = 507

 Score =  506 bits (1304), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/502 (49%), Positives = 335/502 (66%), Gaps = 33/502 (6%)

Query: 34  LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFS 93
           L  + P P  L+ AY K  L+  A HL +E P+R+   + S+L A +++   +  + +  
Sbjct: 23  LAHHTPNPAALVSAYAKSRLLLDALHLFDETPRRNIYLYFSLLAAVSRSASLELALPVLR 82

Query: 94  TMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC 153
            ML+ D L+PDHFV AS+      L + RLG+Q+H  FV+SP+  DDVVKSSLVDMY KC
Sbjct: 83  RMLSADALRPDHFVIASVASVSARLRSLRLGRQLHEHFVVSPYSGDDVVKSSLVDMYCKC 142

Query: 154 GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLV 213
           G P++AR VFDS+  KNSV WTA++S YA +GR ++A+++F   P RNLF WTAL+SGLV
Sbjct: 143 GFPDDARKVFDSMGAKNSVVWTALVSGYASNGRGEEALQLFRSMPGRNLFAWTALISGLV 202

Query: 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
           ++   + A   F+EMRR+ + I D  VLS ++G                           
Sbjct: 203 KTGESVGAVELFVEMRRDDIRIDDAFVLSIVIGGAGQ----------------------- 239

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
                     A   DI++A+++F  +  + V+SWT+++VG AQHG+AEE LALYD MV A
Sbjct: 240 ----------AVACDILSAREVFEGITFRAVISWTTMVVGEAQHGRAEEALALYDRMVLA 289

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
           G KPN+VTFVGLIYACSH GLV KGR+LF+SM  +YGITP LQHYTC LDLLSRSGHL E
Sbjct: 290 GAKPNKVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPGLQHYTCYLDLLSRSGHLLE 349

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453
           AE L+  MP+EPDE TW ALLSACK +++ EM  R+A+ LL L+P+D S+YILLSNVYA 
Sbjct: 350 AEELMTTMPYEPDEATWGALLSACKKYKDAEMCIRIADKLLELRPKDSSTYILLSNVYAV 409

Query: 454 AAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAE 513
              W  V+KVRK    +E++KEP YS+IE G+   +F+AGE    +++EI   L E+  E
Sbjct: 410 NGKWDSVAKVRKCTIGLEIRKEPVYSWIEAGREFRLFHAGEVPLDVREEIMGFLEEMVLE 469

Query: 514 MKRRGYVPDTSSVLHDMEQKEK 535
           M++RGYVPDTSSV+HD+E+ E+
Sbjct: 470 MRKRGYVPDTSSVMHDLEENER 491


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  493 bits (1269), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 241/593 (40%), Positives = 352/593 (59%), Gaps = 7/593 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H+ I + GL     + N LI  Y KC+ VQ A  + + M +RD +SW++++  Y Q+
Sbjct: 278 RRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQS 337

Query: 83  NLPQKTISIFSTMLALDKLQ-----PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
               K  SI      L++++     P+   F S+++AC + GA   G+Q+HA      F 
Sbjct: 338 GYKDKE-SIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKVGFE 396

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D  +++++ +MYAKCG    A  VF  +  KN V+WT+ LS Y + G    A ++F + 
Sbjct: 397 LDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVFSEM 456

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P RN+  W  +++G  Q+ + +  F     M+ EG    D + + +I+ AC   A LE G
Sbjct: 457 PTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQ-PDRVTVITILEACGALAGLERG 515

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           K +H   + LG ES   ++ +++ MY+KC  +  A+ +F +M  +D V+W +++ G  QH
Sbjct: 516 KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAGYGQH 575

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G   E + L+  M+   V PNE+T   +I ACS  GLV +GR++F+ M ED+ +TP  QH
Sbjct: 576 GDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTPRKQH 635

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
           Y C++DLL R+G L EAE  I++MP EPD   W ALL ACK H N ++  R A+H+L L+
Sbjct: 636 YGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHILELE 695

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
           P   S YI LSN+YA A  W   +KVR++M    +KK+ G S IE     H F A + +H
Sbjct: 696 PSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEIDGRIHTFVAEDCAH 755

Query: 498 PLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVP 557
           P  D I   L  L  EMK  GY PD   VLHD++  +KE+ L  HSE+LA+AYGLLK+  
Sbjct: 756 PEIDAIHAELETLTKEMKEAGYTPDMRFVLHDVDDVQKEKALCHHSEKLAIAYGLLKTPS 815

Query: 558 GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           GT +R++KNLRVCGDCH   K IS+I KREIV RDA R+H+F +G CSC DFW
Sbjct: 816 GTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFNNGTCSCGDFW 868



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 116/409 (28%), Positives = 204/409 (49%), Gaps = 42/409 (10%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA+ +     K +H Q+ +LG+     L N+LI+ Y K + V  A  +   M  RD V+W
Sbjct: 66  CAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTW 125

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
           +S++ AY   N P K    F  M   + ++P+   F S++KAC +      G+++H    
Sbjct: 126 SSMIAAYAGNNHPAKAFDTFERMTDAN-IEPNRITFLSILKACNNYSILEKGRKIHTIVK 184

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
                 D  V ++L+ MY+KCG  + A  VF  +  +N VSWTA++ A A+  +  +A E
Sbjct: 185 AMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFE 244

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           ++EQ                               M + G+   + +   S++ +C    
Sbjct: 245 LYEQ-------------------------------MLQAGIS-PNAVTFVSLLNSCNTPE 272

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
            L  G++IH  +   G E+ + ++NA++ MY KC+ +  A++IF RM ++DV+SW+++I 
Sbjct: 273 ALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIA 332

Query: 313 GTAQHG-----QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           G AQ G       +E   L + M   GV PN+VTF+ ++ AC+  G + +GR++   + +
Sbjct: 333 GYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSK 392

Query: 368 -DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
             + +  SLQ  T + ++ ++ G + EAE +   M    +   W + LS
Sbjct: 393 VGFELDRSLQ--TAIFNMYAKCGSIYEAEQVFSKMA-NKNVVAWTSFLS 438



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 125/498 (25%), Positives = 217/498 (43%), Gaps = 65/498 (13%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           +L  L+ C  + I    + +H  +  +G+     +   LI  Y KC  +  A  +  +M 
Sbjct: 160 FLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMT 219

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +R+ VSW +I+ A  Q     +   ++  ML    + P+   F SL+ +C +  A   G+
Sbjct: 220 ERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAG-ISPNAVTFVSLLNSCNTPEALNRGR 278

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++H+         D +V ++L+ MY KC     AR +FD +  ++ +SW+AM++ YA+SG
Sbjct: 279 RIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSG 338

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE-MRREGVDIVDPLVLSSI 244
            K                            +  ID  +  +E MRREGV   + +   SI
Sbjct: 339 YK---------------------------DKESIDEVFQLLERMRREGV-FPNKVTFMSI 370

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + AC     LE G+QIH  +  +G+E    +  AI +MYAKC  I  A+ +F +M  K+V
Sbjct: 371 LRACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNV 430

Query: 305 VSWTS-------------------------------IIVGTAQHGQAEETLALYDEMVSA 333
           V+WTS                               +I G AQ+G   +   L   M + 
Sbjct: 431 VAWTSFLSMYIKCGDLSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAE 490

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
           G +P+ VT + ++ AC  +  + +G KL  +     G+       T L+ + S+ G + E
Sbjct: 491 GFQPDRVTVITILEACGALAGLERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAE 549

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453
           A  +   M    D   W A+L+    H +      +   +  LK     + I L+ V ++
Sbjct: 550 ARTVFDKMS-NRDTVAWNAMLAGYGQHGDGLEAVDLFKRM--LKERVSPNEITLTAVISA 606

Query: 454 AAMWQHVSKVRKLMSVME 471
            +    V + R++  +M+
Sbjct: 607 CSRAGLVQEGREIFRMMQ 624



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 123/492 (25%), Positives = 226/492 (45%), Gaps = 72/492 (14%)

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
            ++++ Y++      A ++F +  +R++  W+++++    + +   AF +F  M    ++
Sbjct: 95  NSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIE 154

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
             + +   SI+ AC N+++LE G++IH +V A+G E+ + ++ A++ MY+KC +I  A +
Sbjct: 155 -PNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGEISVACE 213

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL 354
           +F +M  ++VVSWT+II   AQH +  E   LY++M+ AG+ PN VTFV L+ +C+    
Sbjct: 214 VFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEA 273

Query: 355 VGKGRKLF---------------KSMIEDYGITPSLQHYTCLLDLLSR------------ 387
           + +GR++                 ++I  Y    S+Q    + D +S+            
Sbjct: 274 LNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAG 333

Query: 388 ---SGH-----LDEAENLIKAMPFE---PDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
              SG+     +DE   L++ M  E   P++ T+ ++L AC  H   E G ++   L  +
Sbjct: 334 YAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQIHAELSKV 393

Query: 437 KPE-DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGY--SYIEFGKGS------ 487
             E D S    + N+YA         +V   M+   V     +   YI+ G  S      
Sbjct: 394 GFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVF 453

Query: 488 -----------HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQ---- 532
                      ++  AG   +    ++FELL+ + AE    G+ PD  +V+  +E     
Sbjct: 454 SEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAE----GFQPDRVTVITILEACGAL 509

Query: 533 KEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRD 592
              ER    H+E  AV  G L+S       ++     CG       +  +++ R+ V  +
Sbjct: 510 AGLERGKLVHAE--AVKLG-LESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWN 566

Query: 593 A--TRYHHFKDG 602
           A    Y    DG
Sbjct: 567 AMLAGYGQHGDG 578



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/395 (21%), Positives = 174/395 (44%), Gaps = 56/395 (14%)

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
           +V+      ++  CA     E GK +H  +  LG E  +++ N++++ Y+K  D+ +A+ 
Sbjct: 53  LVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQ 112

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL 354
           +F RM  +DVV+W+S+I   A +    +    ++ M  A ++PN +TF+ ++ AC++  +
Sbjct: 113 VFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSI 172

Query: 355 VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH------------------------ 390
           + KGRK+  ++++  G+   +   T L+ + S+ G                         
Sbjct: 173 LEKGRKI-HTIVKAMGMETDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQ 231

Query: 391 -------LDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
                  L+EA  L + M      P+  T+ +LL++C        G R+ +H+     E 
Sbjct: 232 ANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLE- 290

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
            +  I+ + +         V + R++   M  +    +S +  G     +   E+     
Sbjct: 291 -TDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESI---- 345

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDME------QKEKERQLFWHSERLAVAYGLLK 554
           DE+F+LL      M+R G  P+  + +  +         E+ RQ+  H+E   V + L +
Sbjct: 346 DEVFQLLE----RMRREGVFPNKVTFMSILRACTAHGALEQGRQI--HAELSKVGFELDR 399

Query: 555 SVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIV 589
           S+   +  +      CG  +   ++ S++  + +V
Sbjct: 400 SLQTAIFNMYAK---CGSIYEAEQVFSKMANKNVV 431


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 234/605 (38%), Positives = 372/605 (61%), Gaps = 6/605 (0%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L +CA  +     + +HA +I+  + +   +   L+  Y +C  + YA  +   M +R+ 
Sbjct: 486  LTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNA 545

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
             SW S++  Y Q    Q+ + +F  M  L+ ++PD F  +S++ +C SL  ++ G+++H 
Sbjct: 546  YSWNSMIEGYQQNGETQEALRLFKQM-QLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHN 604

Query: 130  CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
              V +   ++ +++  LVDMYAKCG  + A  V+D    K+ +    M+SA+  SGR  D
Sbjct: 605  FIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRAND 664

Query: 190  AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            A  +F+Q   RN  LW ++++G      + ++F  F+EM    ++  D L + +IV  C+
Sbjct: 665  AKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIE-YDVLTMVTIVNLCS 723

Query: 250  NFAVLELGKQIHGLVIALGYESC-LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
            +   LE G Q+H L+I  G+ +C + +  A+VDMY+KC  I  A+ +F  M  K++VSW 
Sbjct: 724  SLPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWN 783

Query: 309  SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            ++I G ++HG ++E L LY+EM   G+ PNEVTF+ ++ ACSH GLV +G ++F SM ED
Sbjct: 784  AMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQED 843

Query: 369  YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
            Y I    +HYTC++DLL R+G L++A+  ++ MP EP+  TW ALL AC+ H++ +MG  
Sbjct: 844  YNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRL 903

Query: 429  VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
             A  L  L P++P  Y+++SN+YA+A  W+ V  +R++M +  VKK+PG S+IE      
Sbjct: 904  AAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQ 963

Query: 489  IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH---DMEQKEKERQLFWHSER 545
            IF+AG  +HP  +EI+  L  L  + K  GY+PDTS +L    D++++E+E  L  HSER
Sbjct: 964  IFHAGSKTHPKTEEIYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSER 1023

Query: 546  LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
            LA++ GL+     + +RV KNLR+CGDCH   K IS+IT R I+ RD  R+HHF++GKCS
Sbjct: 1024 LALSLGLISLPKKSTIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCS 1083

Query: 606  CNDFW 610
            C D+W
Sbjct: 1084 CGDYW 1088



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 111/472 (23%), Positives = 213/472 (45%), Gaps = 97/472 (20%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH  +++  L+    L + L+D Y KC +V+ AH +   + +R+ VS+ ++L  Y Q 
Sbjct: 397 RELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQE 456

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ + ++  M + D +QPD F F +L+  C +      G+Q+HA  + +    + +V
Sbjct: 457 GKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIV 516

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           ++ LV MY++CG  N A+ +F+ +  +N+ SW +M+  Y ++G  ++A+ +F+Q      
Sbjct: 517 ETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQ------ 570

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                    M+  G+   D   LSS++ +C + +  + G+++H 
Sbjct: 571 -------------------------MQLNGIK-PDCFSLSSMLSSCVSLSDSQKGRELHN 604

Query: 263 LVIALGYESCLFISNAIVDMYAKCS---------------DII----------------A 291
            ++    E    +   +VDMYAKC                D+I                 
Sbjct: 605 FIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRAND 664

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           AK++F +M +++   W SI+ G A  G  +E+   + EM+ + ++ + +T V ++  CS 
Sbjct: 665 AKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSS 724

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN--------------- 396
           +  +  G +L   +I+   +  S+   T L+D+ S+ G + +A                 
Sbjct: 725 LPALEHGDQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNA 784

Query: 397 ----------------LIKAMP---FEPDEPTWAALLSACKHHRNTEMGTRV 429
                           L + MP     P+E T+ A+LSAC H    E G R+
Sbjct: 785 MISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRI 836



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 189/389 (48%), Gaps = 41/389 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LRVC   +     K +H+++I  G      + N LID Y KCD  +    + +EM +R+ 
Sbjct: 283 LRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQ 342

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W SI++A  Q       + +F  M      + + F   S++ A   L     G+++H 
Sbjct: 343 VTWNSIISAEAQFGHFNDALVLFLRMQE-SGYKSNRFNLGSILMASAGLADIGKGRELHG 401

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V +    D ++ S+LVDMY+KCG+   A  VF S+  +N VS+ A+L+ Y + G+ ++
Sbjct: 402 HLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEE 461

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+E++                  +QS + I                 D    ++++  CA
Sbjct: 462 ALELYHD----------------MQSEDGIQP---------------DQFTFTTLLTLCA 490

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           N      G+QIH  +I       + +   +V MY++C  +  AK+IF RM  ++  SW S
Sbjct: 491 NQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNS 550

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL----FKSM 365
           +I G  Q+G+ +E L L+ +M   G+KP+  +   ++ +C  +    KGR+L     ++ 
Sbjct: 551 MIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNT 610

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
           +E+ GI   LQ    L+D+ ++ G +D A
Sbjct: 611 MEEEGI---LQ--VVLVDMYAKCGSMDYA 634



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 210/433 (48%), Gaps = 38/433 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ C   +    V+ L + ++K GL+    +   L+D Y +   +  A   L+E+     
Sbjct: 182 IKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSV 241

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W +++  Y +    ++   IF  ML +  + PD+F FAS ++ CG+L +   GKQVH+
Sbjct: 242 VTWNAVIAGYVKILSWEEAWGIFDRMLKIG-VCPDNFTFASALRVCGALRSRDGGKQVHS 300

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +   F  D  V ++L+DMYAKC                                 ++ 
Sbjct: 301 KLIACGFKGDTFVGNALIDMYAKCD-------------------------------DEES 329

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            +++F++   RN   W +++S   Q  +  DA   F+ M+  G    +   L SI+ A A
Sbjct: 330 CLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYK-SNRFNLGSILMASA 388

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
             A +  G+++HG ++     S + + +A+VDMY+KC  +  A  +F  +  ++ VS+ +
Sbjct: 389 GLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNA 448

Query: 310 IIVGTAQHGQAEETLALYDEMVSA-GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++ G  Q G+AEE L LY +M S  G++P++ TF  L+  C++     +GR++   +I  
Sbjct: 449 LLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIR- 507

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
             IT ++   T L+ + S  G L+ A+ +   M  E +  +W +++   + +  T+   R
Sbjct: 508 ANITKNIIVETELVHMYSECGRLNYAKEIFNRMA-ERNAYSWNSMIEGYQQNGETQEALR 566

Query: 429 VAN--HLLSLKPE 439
           +     L  +KP+
Sbjct: 567 LFKQMQLNGIKPD 579



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 199/450 (44%), Gaps = 72/450 (16%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAY---GKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           K++H Q+I  G +    L   ++  Y   G  D + YA  L EEMP+R+  +W +++ AY
Sbjct: 91  KSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAY 150

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            + +   + + ++  M        D F F S++KAC ++      +Q+ +          
Sbjct: 151 ARVDDYMEVLRLYGRMRGSGNFS-DKFTFPSVIKACIAMEDMGGVRQLQS---------- 199

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
            VVK+ L      C L                    A++  YAR G   DA+   ++   
Sbjct: 200 SVVKAGL-----NCNL----------------FVGGALVDGYARFGWMDDAVTSLDEIEG 238

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
            ++  W A+++G V+  +  +A+  F  M + GV   D    +S +  C      + GKQ
Sbjct: 239 TSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGV-CPDNFTFASALRVCGALRSRDGGKQ 297

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           +H  +IA G++   F+ NA++DMYAKC D  +   +F  M  ++ V+W SII   AQ G 
Sbjct: 298 VHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGH 357

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
             + L L+  M  +G K N      ++ A + +  +GKGR+L   ++ +  +   +   +
Sbjct: 358 FNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNL-LNSDIILGS 416

Query: 380 CLLDLLSRSGHLDEAENLIKAM-----------------------------------PFE 404
            L+D+ S+ G ++EA  + +++                                     +
Sbjct: 417 ALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQ 476

Query: 405 PDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           PD+ T+  LL+ C + RN   G ++  HL+
Sbjct: 477 PDQFTFTTLLTLCANQRNDNQGRQIHAHLI 506



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 108/237 (45%), Gaps = 38/237 (16%)

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS---DIIAA 292
           V+PL  SS++  C +    + GK IH  +I+ GY    ++   I+ +YA+     D+  A
Sbjct: 69  VNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYA 128

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
           + +F  M  +++ +W ++I+  A+     E L LY  M  +G   ++ TF  +I AC  +
Sbjct: 129 RKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAM 188

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA------------------ 394
             +G  R+L  S+++  G+  +L     L+D  +R G +D+A                  
Sbjct: 189 EDMGGVRQLQSSVVK-AGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAV 247

Query: 395 -ENLIKAMPFE---------------PDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
               +K + +E               PD  T+A+ L  C   R+ + G +V + L++
Sbjct: 248 IAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIA 304


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 238/593 (40%), Positives = 351/593 (59%), Gaps = 7/593 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H+ I + GL     + N LI  Y KC+ +Q A    + M +RD +SW++++  Y Q+
Sbjct: 300 RRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQS 359

Query: 83  NLPQKTISIFSTMLALDKLQ-----PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
               K  S+      L++++     P+   F S++KAC   GA   G+Q+HA      F 
Sbjct: 360 GYQDKE-SLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKVGFE 418

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D  +++++ +MYAKCG    A  VF  ++ KN V+W ++L+ Y + G    A ++F + 
Sbjct: 419 SDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVFSEM 478

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
             RN+  W  +++G  QS +    F     M+ EG    D + + SI+ AC   + LE G
Sbjct: 479 STRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQ-PDRVTIISILEACGALSALERG 537

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           K +H   + LG ES   ++ +++ MY+KC ++  A+ +F ++  +D V+W +++ G  QH
Sbjct: 538 KLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAGYGQH 597

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G   E + L+  M+   V PNE+TF  +I AC   GLV +GR++F+ M ED+ + P  QH
Sbjct: 598 GIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKPGKQH 657

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
           Y C++DLL R+G L EAE  I+ MP EPD   W ALL ACK H N ++    A+H+L L+
Sbjct: 658 YGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHILRLE 717

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
           P + S Y+ LSN+YA A  W   +KVRK+M    +KK+ G S IE     H F A + +H
Sbjct: 718 PSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEIDGRIHTFVAEDCAH 777

Query: 498 PLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVP 557
           P  D I   L  L  EMK  GY PD   VLHD+++ +KER L  HSE+LA+AYGLLK+ P
Sbjct: 778 PEIDSIHAELEMLTKEMKEAGYTPDMRFVLHDVDEVQKERALCHHSEKLAIAYGLLKTPP 837

Query: 558 GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           GT +R++KNLRVCGDCH   K IS+I KREIV RDA R+H+FK+G CSC DFW
Sbjct: 838 GTPIRIMKNLRVCGDCHTATKFISKIRKREIVARDANRFHYFKNGTCSCGDFW 890



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 127/466 (27%), Positives = 224/466 (48%), Gaps = 46/466 (9%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA+ +     K +H Q+ +LGL     L N+LI+ Y K   V     +   M  RD V+W
Sbjct: 88  CAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTW 147

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
           +S++ AY   N P K    F  M   + ++P+   F S++KAC +       +++H    
Sbjct: 148 SSMIAAYAGNNHPAKAFDTFERMKDAN-IEPNRITFLSILKACNNYSMLEKAREIHTVVK 206

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
            S    D  V ++L+ MY+KCG  + A  +F  +K +N VSWTA++ A A+  +  +A E
Sbjct: 207 ASGMETDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFE 266

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           ++E+                               M + G+   + +   S++ +C    
Sbjct: 267 LYEK-------------------------------MLQAGIS-PNAVTFVSLLNSCNTPE 294

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
            L  G++IH  +   G E+ + ++NA++ MY KC+ I  A++ F RM ++DV+SW+++I 
Sbjct: 295 ALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIA 354

Query: 313 GTAQHG-----QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           G AQ G       +E   L + M   GV PN+VTF+ ++ ACS  G + +GR++  + I 
Sbjct: 355 GYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIH-AEIS 413

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
             G        T + ++ ++ G + EAE +   M    +   WA+LL+      +     
Sbjct: 414 KVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKME-NKNVVAWASLLTMYIKCGDLTSAE 472

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473
           +V      +   +  S+ L+   YA +     ++KV +L+S M+V+
Sbjct: 473 KV---FSEMSTRNVVSWNLMIAGYAQSG---DIAKVFELLSSMKVE 512



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/506 (24%), Positives = 218/506 (43%), Gaps = 67/506 (13%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           +L  L+ C  + +    + +H  +   G+     +   LI  Y KC  +  A  + ++M 
Sbjct: 182 FLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMK 241

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +R+ VSW +I+ A  Q     +   ++  ML    + P+   F SL+ +C +  A   G+
Sbjct: 242 ERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAG-ISPNAVTFVSLLNSCNTPEALNRGR 300

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++H+         D VV ++L+ MY KC    +AR  FD +  ++ +SW+AM++ YA+SG
Sbjct: 301 RIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQSG 360

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE-MRREGVDIVDPLVLSSI 244
                                       Q +  +D  +  +E MRREGV   + +   SI
Sbjct: 361 ---------------------------YQDKESLDEVFQLLERMRREGV-FPNKVTFMSI 392

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + AC+    LE G+QIH  +  +G+ES   +  AI +MYAKC  I  A+ +F +M  K+V
Sbjct: 393 LKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNV 452

Query: 305 VSWTSI-------------------------------IVGTAQHGQAEETLALYDEMVSA 333
           V+W S+                               I G AQ G   +   L   M   
Sbjct: 453 VAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVE 512

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
           G +P+ VT + ++ AC  +  + +G KL  +     G+       T L+ + S+ G + E
Sbjct: 513 GFQPDRVTIISILEACGALSALERG-KLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTE 571

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453
           A  +   +    D   W A+L+    H        +   +  LK   P + I  + V ++
Sbjct: 572 ARTVFDKIS-NRDTVAWNAMLAGYGQHGIGPEAVDLFKRM--LKERVPPNEITFTAVISA 628

Query: 454 AAMWQHVSKVRKLMSVME--VKKEPG 477
                 V + R++  +M+   + +PG
Sbjct: 629 CGRAGLVQEGREIFRIMQEDFRMKPG 654



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 119/484 (24%), Positives = 224/484 (46%), Gaps = 76/484 (15%)

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
            ++++ Y++ G      ++F +  +R++  W+++++    + +   AF +F  M+   ++
Sbjct: 117 NSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIE 176

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
             + +   SI+ AC N+++LE  ++IH +V A G E+ + ++ A++ MY+KC +I  A +
Sbjct: 177 -PNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEISLACE 235

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL 354
           IF +M+ ++VVSWT+II   AQH +  E   LY++M+ AG+ PN VTFV L+ +C+    
Sbjct: 236 IFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEA 295

Query: 355 VGKGRKLF---------------KSMIEDYGITPSLQHYTCLLDLLSR------------ 387
           + +GR++                 ++I  Y     +Q      D +S+            
Sbjct: 296 LNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAG 355

Query: 388 ---SGH-----LDEAENLIKAMPFE---PDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
              SG+     LDE   L++ M  E   P++ T+ ++L AC  H   E G ++   +  +
Sbjct: 356 YAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIHAEISKV 415

Query: 437 KPE-DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS-----YIEFGKGS--- 487
             E D S    + N+YA       + +  ++ S ME K    ++     YI+ G  +   
Sbjct: 416 GFESDRSLQTAIFNMYAKCG---SIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAE 472

Query: 488 --------------HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQ- 532
                         ++  AG        ++FELL+     MK  G+ PD  +++  +E  
Sbjct: 473 KVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLS----SMKVEGFQPDRVTIISILEAC 528

Query: 533 ---KEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIV 589
                 ER    H+E  AV  G L+S       ++     CG+      +  +I+ R+ V
Sbjct: 529 GALSALERGKLVHAE--AVKLG-LESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTV 585

Query: 590 VRDA 593
             +A
Sbjct: 586 AWNA 589



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 100/187 (53%), Gaps = 2/187 (1%)

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
           +V+      I+  CA     E GK +H  +  LG    +++ N++++ Y+K  D+ + + 
Sbjct: 75  LVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQ 134

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL 354
           +F RM  +DVV+W+S+I   A +    +    ++ M  A ++PN +TF+ ++ AC++  +
Sbjct: 135 VFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNRITFLSILKACNNYSM 194

Query: 355 VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           + K R++  ++++  G+   +   T L+ + S+ G +  A  + + M  E +  +W A++
Sbjct: 195 LEKAREIH-TVVKASGMETDVAVATALITMYSKCGEISLACEIFQKMK-ERNVVSWTAII 252

Query: 415 SACKHHR 421
            A   HR
Sbjct: 253 QANAQHR 259


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  485 bits (1249), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 248/635 (39%), Positives = 380/635 (59%), Gaps = 35/635 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-DLV-------------- 54
           L  CA +Q     + +H+ ++KLGL    P+  +L++ Y KC D V              
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 55  ----------------QYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                           + A    E+MP RD VSW S+++ Y+Q     + ++IFS ML  
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNE 268

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
             L+PD+F  AS++ AC +L    +GKQ+HA  + +       V ++L+ MYAK G    
Sbjct: 269 PSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEI 328

Query: 159 ARAVFDSIKLKN--SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
           AR + +  +  N   +++T++L  Y + G  K A EIF +   R++  WTA++ G VQ+ 
Sbjct: 329 ARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNG 388

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
              DA   F  M  EG +  +   L++++   ++  +LE GKQIH   I  G  S   ++
Sbjct: 389 LWNDALELFRLMVNEGPE-PNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVT 447

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
           NA++ MYAK  +I  AK +F     +K++VSWTS+I+  AQHG  +E + L++ M+S G+
Sbjct: 448 NALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGM 507

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
           KP+ +T+VG++ AC+HVGLV +GRK +  M E + I P+L HY C++DL  R+G L EA 
Sbjct: 508 KPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAY 567

Query: 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
             I++MP EPD   W +LL++CK H+N ++    A  LL + P +  +Y+ L+NVY++  
Sbjct: 568 LFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACG 627

Query: 456 MWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK 515
            W++ ++ RKLM    V+KE G S+I      H F   +  HP KDEI++L+ E+  E+K
Sbjct: 628 KWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIK 687

Query: 516 RRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHI 575
           + G++PDT SVLHD+E++ KE+ L +HSE+LA+A+GLL +   T LR++KNLRVC DCH 
Sbjct: 688 KMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHS 747

Query: 576 VMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +K IS++  REI+VRDATR+HHFKDG CSC D+W
Sbjct: 748 AIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  223 bits (567), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 153/553 (27%), Positives = 258/553 (46%), Gaps = 101/553 (18%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           + H L+   R +     +++H QIIK GLH    L N L+  Y K   +++AHH+ +EMP
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 66  QR-------------------------------DHVSWASILTAYNQANLPQKTISIFST 94
            +                               D VSW +I+  YNQ  L    I +F+ 
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
           M++ +++ P  F  ++++ +C +     +G+++H+  V         V +SL++MYAKCG
Sbjct: 133 MIS-ERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCG 191

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
            P  A+ VFD + +KN  +W A++S Y +SG+ + A   FE+ P R++  W +++SG  Q
Sbjct: 192 DPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQ 251

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF 274
               ++A   F +M  E     D   L+SI+ ACAN   L +GKQIH  ++    E+   
Sbjct: 252 QGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGA 311

Query: 275 ISNAIVDMYAKCS-----------------DIIA----------------AKDIFGRMRR 301
           + NA++ MYAK                   +IIA                A++IF ++R 
Sbjct: 312 VGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRD 371

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           +DVV+WT++IVG  Q+G   + L L+  MV+ G +PN  T   ++   S + ++  G+++
Sbjct: 372 RDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQI 431

Query: 362 FKSMIE-DYGITPSLQH------------------------------YTCLLDLLSRSGH 390
             S I+     TPS+ +                              +T ++  L++ G 
Sbjct: 432 HASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGL 491

Query: 391 LDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP--SSYI 445
             EA NL + M     +PD  T+  +LSAC H    E G +  N +  +   +P  S Y 
Sbjct: 492 GKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYA 551

Query: 446 LLSNVYASAAMWQ 458
            + ++Y  A + Q
Sbjct: 552 CMIDLYGRAGLLQ 564


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  484 bits (1247), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 243/635 (38%), Positives = 367/635 (57%), Gaps = 35/635 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAH----------- 58
           L  CA  +     + +H+ ++KLGL    P+ N++++ YGKC   + A            
Sbjct: 169 LSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFERMPERSV 228

Query: 59  --------------------HLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                                L E MP R  VSW +++  YNQ  L  K +  FS ML+ 
Sbjct: 229 SSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWFFSRMLSY 288

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
             + PD F   S++ AC +LG   +GKQVHA  + S       V ++L+ MYAK G   N
Sbjct: 289 STMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALISMYAKSGSVEN 348

Query: 159 ARAVFDSIKLK--NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
           AR V     +   N +S+TA+L  Y + G  K A E+F+    R++  WTA++ G  Q+ 
Sbjct: 349 ARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWTAMIVGYEQNG 408

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
           +  +A   F  M R G +  +   +++++  CA+ A LE GKQIH   I    E    +S
Sbjct: 409 HNDEAMELFRLMIRSGPE-PNSYTVAAVLSVCASLACLEYGKQIHCKAIRSLQEQSSSVS 467

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
           N+IV MYA+   +  A+ +F R+  RK+ V+WTS+IV  AQHG  E+ + L++EM+  GV
Sbjct: 468 NSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQHGLGEDAVGLFEEMLRVGV 527

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
           KP+ +TFVG++ AC+HVG V +G++ F+ + + +GI P + HY C++DLL+R+G   EA+
Sbjct: 528 KPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPEMSHYACMVDLLARAGLFSEAQ 587

Query: 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
             I+ MP EPD   W +LLSAC+ H+N ++    A  LLS+ P +  +Y  LSNVY++  
Sbjct: 588 EFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLLSIDPGNSGAYSALSNVYSACG 647

Query: 456 MWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK 515
            W   +K+ K      VKKE G+S+   G   H+F A +  HP +D ++    ++  ++K
Sbjct: 648 RWNDAAKIWKRRKDKSVKKETGFSWTHIGNRVHVFGADDVLHPQRDTVYRTAAKMWDDIK 707

Query: 516 RRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHI 575
           + G+VPD  SVLHD++ + KE  L  HSE+LA+A+GL+ +   T LR++KNLRVC DCH 
Sbjct: 708 KAGFVPDLQSVLHDVDDELKEEMLSRHSEKLAIAFGLVSTPEKTTLRIMKNLRVCNDCHT 767

Query: 576 VMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +K IS++  REI++RDATR+HHFKDG CSC D+W
Sbjct: 768 AIKFISKVADREIILRDATRFHHFKDGFCSCKDYW 802



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 197/417 (47%), Gaps = 45/417 (10%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+L+  Y K   +  A  +  EMP+RD VSW  ++   N+     + I +F  M+  D L
Sbjct: 100 NSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVT-DGL 158

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P  F   +++ +C +  A  +G++VH+  V         V +S+++MY KCG    ARA
Sbjct: 159 SPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARA 218

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF+ +  ++  SW AM+S  A  GR   A+ +FE  P R +  W A+++G  Q+     A
Sbjct: 219 VFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKA 278

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
            + F  M        D   ++S++ ACAN  ++ +GKQ+H  ++         ++NA++ 
Sbjct: 279 LWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNALIS 338

Query: 282 MYAKC---------------------------------SDIIAAKDIFGRMRRKDVVSWT 308
           MYAK                                   D+  A+++F  M  +DVV+WT
Sbjct: 339 MYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVAWT 398

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++IVG  Q+G  +E + L+  M+ +G +PN  T   ++  C+ +  +  G+++    I  
Sbjct: 399 AMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAIR- 457

Query: 369 YGITPSLQHYT-----CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
                SLQ  +      ++ + +RSG L  A  +   + +  +  TW +++ A   H
Sbjct: 458 -----SLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQH 509



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 159/331 (48%), Gaps = 43/331 (12%)

Query: 109 ASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP-----NNARAVF 163
           A L++ C +      G+ +HA  V +       + ++L+  YA            AR +F
Sbjct: 27  ARLLQRCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLF 86

Query: 164 DSIKL--KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           D I    +N  +W ++LS YA+SGR  DA  +F + P R+   WT +V GL +     +A
Sbjct: 87  DEIPAAQRNVFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEA 146

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F++M  +G+       L++++ +CA      +G+++H  V+ LG  SC+ ++N++++
Sbjct: 147 IKMFLDMVTDGLSPTQ-FTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLN 205

Query: 282 MYAKCSDIIAAKDIFGRMRRKDV-------------------------------VSWTSI 310
           MY KC D   A+ +F RM  + V                               VSW ++
Sbjct: 206 MYGKCGDAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAV 265

Query: 311 IVGTAQHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           I G  Q+G   + L  +  M+S + + P+E T   ++ AC+++G+V  G+++   ++   
Sbjct: 266 IAGYNQNGLNAKALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSR 325

Query: 370 GITPSLQHYT-CLLDLLSRSGHLDEAENLIK 399
              P +   T  L+ + ++SG ++ A  +++
Sbjct: 326 --MPYIGQVTNALISMYAKSGSVENARGVMQ 354



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 78/147 (53%), Gaps = 2/147 (1%)

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           +F  N+++ +YAK   +  A+ +F  M  +D VSWT ++VG  + G+  E + ++ +MV+
Sbjct: 96  VFTWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVT 155

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
            G+ P + T   ++ +C+     G GRK+  S +   G++  +     +L++  + G  +
Sbjct: 156 DGLSPTQFTLTNVLSSCAATEARGVGRKV-HSFVVKLGLSSCVPVANSVLNMYGKCGDAE 214

Query: 393 EAENLIKAMPFEPDEPTWAALLSACKH 419
            A  + + MP E    +W A++S   H
Sbjct: 215 TARAVFERMP-ERSVSSWNAMVSLDAH 240


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  484 bits (1246), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 248/635 (39%), Positives = 379/635 (59%), Gaps = 35/635 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-DLV-------------- 54
           L  CA +Q     + +H+ ++KLGL    P+  +L++ Y KC D V              
Sbjct: 149 LSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCGDPVIAKVVFDRMTVKNI 208

Query: 55  ----------------QYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                           + A    E+MP RD VSW S+++ Y+Q     + + IFS ML  
Sbjct: 209 STWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNE 268

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
             L+PD+F  AS++ AC +L    +GKQ+HA  + +       V ++L+ MYAK G    
Sbjct: 269 PSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEI 328

Query: 159 ARAVFDSIKLKN--SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
           AR + +  +  N   +++T++L  Y + G  K A EIF +   R++  WTA++ G VQ+ 
Sbjct: 329 ARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNG 388

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
              DA   F  M  EG +  +   L++++   ++  +LE GKQIH   I  G  S   ++
Sbjct: 389 LWNDALELFRLMVNEGPE-PNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVT 447

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
           NA++ MYAK  +I  AK +F     +K++VSWTS+I+  AQHG  +E + L++ M+S G+
Sbjct: 448 NALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGM 507

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
           KP+ +T+VG++ AC+HVGLV +GRK +  M E + I P+L HY C++DL  R+G L EA 
Sbjct: 508 KPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAY 567

Query: 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
             I++MP EPD   W +LL++CK H+N ++    A  LL + P +  +Y+ L+NVY++  
Sbjct: 568 LFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGAYLALANVYSACG 627

Query: 456 MWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK 515
            W++ ++ RKLM    V+KE G S+I      H F   +  HP KDEI++L+ E+  E+K
Sbjct: 628 KWENAAQTRKLMKDRGVRKEKGISWIHIKNEVHAFGVEDVIHPQKDEIYKLMAEIWEEIK 687

Query: 516 RRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHI 575
           + G++PDT SVLHD+E++ KE+ L +HSE+LA+A+GLL +   T LR++KNLRVC DCH 
Sbjct: 688 KMGFIPDTESVLHDLEEEVKEQILKYHSEKLAIAFGLLNTPENTALRIMKNLRVCNDCHS 747

Query: 576 VMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +K IS++  REI+VRDATR+HHFKDG CSC D+W
Sbjct: 748 AIKFISKLVGREIIVRDATRFHHFKDGSCSCRDYW 782



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 153/553 (27%), Positives = 258/553 (46%), Gaps = 101/553 (18%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           + H L+   R +     +++H QIIK GLH    L N L+  Y K   +++AHH+ +EMP
Sbjct: 13  FAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFAHHVFDEMP 72

Query: 66  QR-------------------------------DHVSWASILTAYNQANLPQKTISIFST 94
            +                               D VSW +I+  YNQ  L    I +F+ 
Sbjct: 73  LKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFDNAIWMFAK 132

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
           M++ +++ P  F  ++++ +C +     +G+++H+  V         V +SL++MYAKCG
Sbjct: 133 MIS-ERVPPSQFTVSNVLSSCAANQTLDIGRKIHSFVVKLGLGSCVPVATSLLNMYAKCG 191

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
            P  A+ VFD + +KN  +W A++S Y +SG+ + A   FE+ P R++  W +++SG  Q
Sbjct: 192 DPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQ 251

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF 274
               ++A   F +M  E     D   L+SI+ ACAN   L +GKQIH  ++    E+   
Sbjct: 252 QGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHAYILRAETETSGA 311

Query: 275 ISNAIVDMYAKCS-----------------DIIA----------------AKDIFGRMRR 301
           + NA++ MYAK                   +IIA                A++IF ++R 
Sbjct: 312 VGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRD 371

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           +DVV+WT++IVG  Q+G   + L L+  MV+ G +PN  T   ++   S + ++  G+++
Sbjct: 372 RDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQI 431

Query: 362 FKSMIE-DYGITPSLQH------------------------------YTCLLDLLSRSGH 390
             S I+     TPS+ +                              +T ++  L++ G 
Sbjct: 432 HASAIKAGESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGL 491

Query: 391 LDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP--SSYI 445
             EA NL + M     +PD  T+  +LSAC H    E G +  N +  +   +P  S Y 
Sbjct: 492 GKEAINLFERMLSVGMKPDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYA 551

Query: 446 LLSNVYASAAMWQ 458
            + ++Y  A + Q
Sbjct: 552 CMIDLYGRAGLLQ 564


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/602 (39%), Positives = 356/602 (59%), Gaps = 35/602 (5%)

Query: 10  LRVCARHQIALTV-KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           + VCA H +AL   K +H   I+ G+     + N L++ Y KC  V  AH L E MP RD
Sbjct: 228 MPVCA-HLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRD 286

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
             SW +I+  Y+  +   + ++ F+ M  +  ++P+     S++ AC  L A   G+Q+H
Sbjct: 287 VASWNAIIGGYSLNSQHHEALAFFNRM-QVRGIKPNSITMVSVLPACAHLFALEQGQQIH 345

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              + S F  +DVV ++LV+MY                               A+ G   
Sbjct: 346 GYAIRSGFESNDVVGNALVNMY-------------------------------AKCGNVN 374

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            A ++FE+ P +N+  W A++SG  Q  +  +A   FIEM+ +G+   D   + S++ AC
Sbjct: 375 SAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIK-PDSFAIVSVLPAC 433

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A+F  LE GKQIHG  I  G+ES + +   +VD+YAKC ++  A+ +F RM  +DVVSWT
Sbjct: 434 AHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWT 493

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++I+    HG  E+ LAL+ +M   G K + + F  ++ ACSH GLV +G + F+ M  D
Sbjct: 494 TMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSD 553

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YG+ P L+HY CL+DLL R+GHLDEA  +IK M  EPD   W ALL AC+ H N E+G +
Sbjct: 554 YGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQ 613

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            A HL  L P++   Y+LLSN+YA A  W+ V+K+RK+M    VKK+PG S +   +   
Sbjct: 614 AAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQ 673

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F  G+ +HP  ++I+ +L  L  +M++ GYVP+T+  L D+E++ KE  L  HSE+LA+
Sbjct: 674 TFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQDVEEEAKENILSSHSEKLAI 733

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           ++G++ + PG  +R++KNLRVC DCH   K IS+I  REI+VRDA R+HH K+G CSC D
Sbjct: 734 SFGIINTSPGIPIRIMKNLRVCSDCHNATKFISKIVGREIIVRDANRFHHVKNGFCSCGD 793

Query: 609 FW 610
           +W
Sbjct: 794 YW 795



 Score =  218 bits (556), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 123/419 (29%), Positives = 215/419 (51%), Gaps = 35/419 (8%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           +L  ++ C         + +H  II  G      +   L   Y KC  ++ A  + + MP
Sbjct: 123 FLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMP 182

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +RD VSW +I+  Y+Q   P + +++FS M  ++ ++P+     S++  C  L A   GK
Sbjct: 183 KRDVVSWNAIIAGYSQNGQPYEALALFSEM-QVNGIKPNSSTLVSVMPVCAHLLALEQGK 241

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q+H   + S    D +V + LV+MYAKCG  N A  +F+ + +++  SW A++  Y+ + 
Sbjct: 242 QIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNS 301

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
           +  +A+  F +  VR +                                  + + + S++
Sbjct: 302 QHHEALAFFNRMQVRGI--------------------------------KPNSITMVSVL 329

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            ACA+   LE G+QIHG  I  G+ES   + NA+V+MYAKC ++ +A  +F RM +K+VV
Sbjct: 330 PACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVV 389

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +W +II G +QHG   E LAL+ EM + G+KP+    V ++ AC+H   + +G+++    
Sbjct: 390 AWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYT 449

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           I   G   ++   T L+D+ ++ G+++ A+ L + MP E D  +W  ++ A   H + E
Sbjct: 450 IRS-GFESNVVVGTGLVDIYAKCGNVNTAQKLFERMP-EQDVVSWTTMILAYGIHGHGE 506



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/418 (27%), Positives = 198/418 (47%), Gaps = 46/418 (11%)

Query: 14  ARHQIALTVKTLHAQIIKLGLHQYGP--LPNTLIDAYGKCDLVQYAHHL-----LEEMPQ 66
           A +QI+     LH+    +  + YGP  LP + + A  + + V+    +       +  Q
Sbjct: 19  APNQISFHHTHLHSISYHVCFYFYGPSPLPTSTVVAQLRRNKVKTTREVSACANQTQFTQ 78

Query: 67  RD----HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
            D     V W   +  Y +     K + ++  M     + PD  VF S++KACGS    +
Sbjct: 79  TDIRNNAVVWKETIIGYVKNGFWNKALRLYYQM-QRTGINPDKLVFLSVIKACGSQSDLQ 137

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
            G++VH   +   F  D +V ++L  MY KC                             
Sbjct: 138 AGRKVHEDIIARGFESDVIVGTALASMYTKC----------------------------- 168

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
             G  ++A ++F++ P R++  W A+++G  Q+    +A   F EM+  G+   +   L 
Sbjct: 169 --GSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIK-PNSSTLV 225

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           S++  CA+   LE GKQIH   I  G ES + + N +V+MYAKC ++  A  +F RM  +
Sbjct: 226 SVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIR 285

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           DV SW +II G + + Q  E LA ++ M   G+KPN +T V ++ AC+H+  + +G+++ 
Sbjct: 286 DVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQIH 345

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
              I   G   +      L+++ ++ G+++ A  L + MP + +   W A++S    H
Sbjct: 346 GYAIRS-GFESNDVVGNALVNMYAKCGNVNSAYKLFERMP-KKNVVAWNAIISGYSQH 401



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 119/465 (25%), Positives = 212/465 (45%), Gaps = 76/465 (16%)

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN-LFLWTALVSGLVQSRNEIDAFYSFIE 227
           +N V  T  +SA A   +       F Q  +RN   +W   + G V++     A   + +
Sbjct: 58  RNKVKTTREVSACANQTQ-------FTQTDIRNNAVVWKETIIGYVKNGFWNKALRLYYQ 110

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M+R G++  D LV  S++ AC + + L+ G+++H  +IA G+ES + +  A+  MY KC 
Sbjct: 111 MQRTGIN-PDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCG 169

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            +  A+ +F RM ++DVVSW +II G +Q+GQ  E LAL+ EM   G+KPN  T V ++ 
Sbjct: 170 SLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMP 229

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP----- 402
            C+H+  + +G+++    I   GI   +     L+++ ++ G+++ A  L + MP     
Sbjct: 230 VCAHLLALEQGKQIHCYAIRS-GIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVA 288

Query: 403 -----------------------------FEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
                                         +P+  T  ++L AC H    E G ++  H 
Sbjct: 289 SWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQI--HG 346

Query: 434 LSLKPEDPSSYIL---LSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIF 490
            +++    S+ ++   L N+YA      +V+   KL   M  K    ++ I  G   H  
Sbjct: 347 YAIRSGFESNDVVGNALVNMYAKCG---NVNSAYKLFERMPKKNVVAWNAIISGYSQH-- 401

Query: 491 YAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDME------QKEKERQLFWHSE 544
                 HP   E   L  E+ A+    G  PD+ +++  +         E+ +Q+  ++ 
Sbjct: 402 -----GHP--HEALALFIEMQAQ----GIKPDSFAIVSVLPACAHFLALEQGKQIHGYTI 450

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIV 589
           R      +   V GT L  V     CG+ +   K+  R+ ++++V
Sbjct: 451 RSGFESNV---VVGTGL--VDIYAKCGNVNTAQKLFERMPEQDVV 490


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/569 (42%), Positives = 351/569 (61%), Gaps = 33/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NTLI    +C  V+ +  L  EM +RD +SW S++T + Q  L +  I IF  M  L+ L
Sbjct: 213 NTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREM-KLENL 271

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           Q D + F S++ ACG + A + GKQVHA  + + + D+  V S+LVDMY KC        
Sbjct: 272 QMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKC-------- 323

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
                  KN                 K A  +F++   +N+  WTA++ G  Q+    +A
Sbjct: 324 -------KNI----------------KSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEA 360

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
             +F +M++ G++  D   L S++ +CAN A LE G Q H   +  G  S + +SNA+V 
Sbjct: 361 VKTFSDMQKYGIE-PDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITVSNALVT 419

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           +Y KC  I  +  +F  +  KD V+WT+++ G AQ G+A ET+ L++ M++ G+KP++VT
Sbjct: 420 LYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVT 479

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+G++ ACS  GLV KG ++F+SMI ++GI P   HYTC++DL SR+G ++EA N I  M
Sbjct: 480 FIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKM 539

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           PF PD  +WA LLS+C+ + N ++G   A  L+ L P + +SY+LLS+VYA+   W+ V+
Sbjct: 540 PFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVA 599

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           ++RK M    ++KEPG S+I++    H+F A + S+P  D+I+  L +L+ +M + GYVP
Sbjct: 600 RLRKDMRDKGLRKEPGCSWIKYKNQVHVFSADDKSNPFSDQIYSELEKLNYKMIKEGYVP 659

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           D +SVLHD+   EK + L  HSE+LA+A+GLL   PG  +RVVKNLRVC DCH   K IS
Sbjct: 660 DMNSVLHDVGDSEKIKMLNHHSEKLAIAFGLLFIPPGLPIRVVKNLRVCSDCHNATKYIS 719

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +IT REI+VRD  R+H FKDG CSC DFW
Sbjct: 720 KITNREILVRDTARFHLFKDGTCSCGDFW 748



 Score =  223 bits (568), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 133/445 (29%), Positives = 227/445 (51%), Gaps = 35/445 (7%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIK-------------------LGLHQYG------ 38
           +HY   L++C         K LH+ IIK                   LG   Y       
Sbjct: 10  NHYCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQ 69

Query: 39  -PLPN-----TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIF 92
            P PN     T++ AY K   V    +L + MP+RD VSW S+++ Y    L  +++  +
Sbjct: 70  MPHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAY 129

Query: 93  STMLALD-KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYA 151
           + ML  D     +   F++L+      G  +LG+Q+H   V   F     V S LVDMY+
Sbjct: 130 NLMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYS 189

Query: 152 KCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSG 211
           K G+ + AR VFD +  KN V +  ++    R GR +D+  +F +   R+   WT++++G
Sbjct: 190 KMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITG 249

Query: 212 LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271
             Q+  + DA   F EM+ E + + D     S++ AC     L+ GKQ+H  +I   Y+ 
Sbjct: 250 FTQNGLDRDAIDIFREMKLENLQM-DQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKD 308

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
            +F+++A+VDMY KC +I +A+ +F +M  K+VVSWT+++VG  Q+G +EE +  + +M 
Sbjct: 309 NIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQ 368

Query: 332 SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
             G++P++ T   +I +C+++  + +G + F +     G+   +     L+ L  + G +
Sbjct: 369 KYGIEPDDFTLGSVISSCANLASLEEGAQ-FHARALTSGLISFITVSNALVTLYGKCGSI 427

Query: 392 DEAENLIKAMPFEPDEPTWAALLSA 416
           +++  L   + F+ DE TW AL+S 
Sbjct: 428 EDSHRLFNEISFK-DEVTWTALVSG 451



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 140/307 (45%), Gaps = 47/307 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HA II+        + + L+D Y KC  ++ A  + ++M  ++ VSW ++L  Y Q 
Sbjct: 295 KQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQN 354

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ +  FS M     ++PD F   S++ +C +L +   G Q HA  + S       V
Sbjct: 355 GYSEEAVKTFSDMQKYG-IEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLISFITV 413

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LV +Y KCG   ++  +F+ I  K+ V+WTA++S YA+ G+  + + +FE       
Sbjct: 414 SNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFE------- 466

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI-- 260
              + L  GL                        D +    ++ AC+   ++E G QI  
Sbjct: 467 ---SMLAHGLKP----------------------DKVTFIGVLSACSRAGLVEKGNQIFE 501

Query: 261 -----HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGT 314
                HG+V    + +C+      +D++++   I  A++   +M    D +SW +++   
Sbjct: 502 SMINEHGIVPIQDHYTCM------IDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSC 555

Query: 315 AQHGQAE 321
             +G  +
Sbjct: 556 RFYGNMD 562


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  480 bits (1235), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 236/604 (39%), Positives = 370/604 (61%), Gaps = 6/604 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C +       K +H  ++K GL +   + N L+  YG+C  V+YA  + ++M +RD 
Sbjct: 131 LKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDV 190

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW++++ + ++       + +   M  + +++P      S+V         R+GK +HA
Sbjct: 191 VSWSTMIRSLSRNKEFDMALELIREMNFM-QVRPSEVAMVSMVNLFADTANMRMGKAMHA 249

Query: 130 CFVLSPFCDDDV---VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
            +V+    ++ +     ++L+DMYAKCG    AR +F+ +  K  VSWTAM++   RS R
Sbjct: 250 -YVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNR 308

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
            ++A  +F+    R++ +WTA++S   Q+     AF  F +MR  GV     + + S++ 
Sbjct: 309 LEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTK-VTIVSLLS 367

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
            CA    L+LGK +H  +     E    ++ A+VDMYAKC DI AA  +F     +D+  
Sbjct: 368 LCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICM 427

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W +II G A HG  EE L ++ EM   GVKPN++TF+GL++ACSH GLV +G+KLF+ M+
Sbjct: 428 WNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMV 487

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             +G+ P ++HY C++DLL R+G LDEA  +IK+MP +P+   W AL++AC+ H+N ++G
Sbjct: 488 HTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLG 547

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
              A  LL ++PE+    +L+SN+YA+A  W   + VRK M  + +KKEPG+S IE    
Sbjct: 548 ELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGT 607

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            H F  G+ SHP    I E+L E+  ++   GYVPDTS+VL +++++EKE  L +HSE+L
Sbjct: 608 VHEFLMGDQSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKL 667

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+A+GL+ + P T +R+VKNLRVC DCH   K++S+I  R I+VRD  R+HHF++G CSC
Sbjct: 668 AMAFGLISTAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSC 727

Query: 607 NDFW 610
            D+W
Sbjct: 728 GDYW 731



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 197/436 (45%), Gaps = 93/436 (21%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--RDHVSWASILTAY 79
            K +HA IIK   H    +P                   L + P        W  ++T+Y
Sbjct: 59  TKQIHAHIIKTHFHHALQIP-------------------LNDFPSGLSPSAQWNFVITSY 99

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            + N P+  +++++ +  +D  + D+F+  S++KACG +  T+LGK++H  FVL    D 
Sbjct: 100 TKRNQPRNALNVYAQLRKMD-FEVDNFMAPSVLKACGQVSWTQLGKEIHG-FVLKKGLDR 157

Query: 140 DV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           DV V ++L+ MY +C     AR VFD +  ++ VSW+ M+ + +R+     A+E+  +  
Sbjct: 158 DVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIRE-- 215

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
                                    +F+++R   V +V      S+V   A+ A + +GK
Sbjct: 216 ------------------------MNFMQVRPSEVAMV------SMVNLFADTANMRMGK 245

Query: 259 QIHGLVIALGYESCLFI--SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
            +H  VI       + +  + A++DMYAKC  +  A+ +F  + +K VVSWT++I G  +
Sbjct: 246 AMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIR 305

Query: 317 HGQAEETLA-------------------------------LYDEMVSAGVKPNEVTFVGL 345
             + EE  A                               L+D+M ++GV+P +VT V L
Sbjct: 306 SNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSL 365

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL-IKAMPFE 404
           +  C+  G +  G K   S I+   +       T L+D+ ++ G ++ A  L I+A+   
Sbjct: 366 LSLCAVAGALDLG-KWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAI--S 422

Query: 405 PDEPTWAALLSACKHH 420
            D   W A+++    H
Sbjct: 423 RDICMWNAIITGFAMH 438


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/569 (42%), Positives = 351/569 (61%), Gaps = 33/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NTLI    +C  ++ +  L  +M ++D +SW +++  + Q  L ++ I +F  M  L+ L
Sbjct: 212 NTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREM-RLENL 270

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           + D + F S++ ACG + A + GKQVHA  + + + D+  V S+LVDMY KC        
Sbjct: 271 EMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKC-------- 322

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
              SIK                      A  +F +   +N+  WTA++ G  Q+    +A
Sbjct: 323 --KSIK---------------------SAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEA 359

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F +M+  G++  D   L S++ +CAN A LE G Q H   +  G  S + +SNA+V 
Sbjct: 360 VKIFCDMQNNGIE-PDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALVT 418

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           +Y KC  I  +  +F  M   D VSWT+++ G AQ G+A ETL L++ M++ G KP++VT
Sbjct: 419 LYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVT 478

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+G++ ACS  GLV KG ++F+SMI+++ I P   HYTC++DL SR+G L+EA   I  M
Sbjct: 479 FIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHYTCMIDLFSRAGRLEEARKFINKM 538

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           PF PD   WA+LLS+C+ HRN E+G   A  LL L+P + +SYILLS++YA+   W+ V+
Sbjct: 539 PFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLEPHNTASYILLSSIYAAKGKWEEVA 598

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
            +RK M    ++KEPG S+I++    HIF A + S+P  D+I+  L +L+ +M + GYVP
Sbjct: 599 NLRKGMRDKGLRKEPGCSWIKYKNQVHIFSADDQSNPFSDQIYSELEKLNYKMVQEGYVP 658

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           D +SVLHD++  EK + L  HSE+LA+A+GL+   PG  +RVVKNLRVCGDCH   K IS
Sbjct: 659 DMNSVLHDVDDSEKIKMLNHHSEKLAIAFGLIFIPPGLPIRVVKNLRVCGDCHNATKYIS 718

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +IT+REI+VRDA R+H FKDG+CSC DFW
Sbjct: 719 KITQREILVRDAARFHLFKDGRCSCGDFW 747



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 134/498 (26%), Positives = 247/498 (49%), Gaps = 45/498 (9%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           +HY   L+ C         K +H  IIK   +    L N L+ AY K D + YA  + ++
Sbjct: 16  NHYCELLKHCR------DTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQ 69

Query: 64  MPQRDHVSWASILTAYNQ-ANLPQ------------------------------KTISIF 92
           MPQR+  SW ++L++Y++ A LP+                              +++  +
Sbjct: 70  MPQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAY 129

Query: 93  STMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK 152
           + ML       +    ++++      G   LG QVH   V   F     V S LVDMY+K
Sbjct: 130 NLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSK 189

Query: 153 CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGL 212
            GL   AR  FD +  KN V +  +++   R  R +D+ ++F     ++   WTA+++G 
Sbjct: 190 TGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGF 249

Query: 213 VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC 272
            Q+  + +A   F EMR E +++ D     S++ AC     L+ GKQ+H  +I   Y+  
Sbjct: 250 TQNGLDREAIDLFREMRLENLEM-DQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDN 308

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           +F+ +A+VDMY KC  I +A+ +F +M  K+VVSWT+++VG  Q+G +EE + ++ +M +
Sbjct: 309 IFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQN 368

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLF-KSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
            G++P++ T   +I +C+++  + +G +   ++++   G+   +     L+ L  + G +
Sbjct: 369 NGIEPDDFTLGSVISSCANLASLEEGAQFHCRALVS--GLISFITVSNALVTLYGKCGSI 426

Query: 392 DEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS--LKPEDPSSYILLSN 449
           +++  L   M +  DE +W AL+S            R+   +L+   KP D  ++I + +
Sbjct: 427 EDSHRLFSEMSY-VDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKP-DKVTFIGVLS 484

Query: 450 VYASAAMWQHVSKVRKLM 467
             + A + Q  +++ + M
Sbjct: 485 ACSRAGLVQKGNQIFESM 502



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 79/161 (49%), Gaps = 9/161 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
            H + +  GL  +  + N L+  YGKC  ++ +H L  EM   D VSW ++++ Y Q   
Sbjct: 397 FHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFGK 456

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV----LSPFCDDD 140
             +T+ +F +MLA    +PD   F  ++ AC   G  + G Q+    +    + P  D  
Sbjct: 457 ANETLRLFESMLA-HGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDH- 514

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
              + ++D++++ G    AR   + +    +++ W ++LS+
Sbjct: 515 --YTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSS 553


>gi|297738895|emb|CBI28140.3| unnamed protein product [Vitis vinifera]
          Length = 580

 Score =  478 bits (1229), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 246/579 (42%), Positives = 346/579 (59%), Gaps = 20/579 (3%)

Query: 33  GLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIF 92
            LH  G LP              YA  +  ++P     +  SI+  Y   NLP++ I +F
Sbjct: 21  ALHDSGSLP--------------YARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAI-LF 65

Query: 93  STMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK 152
             ++ L  L PD F F SL K+CG L     GKQ+H       F  D  ++++L++MY+ 
Sbjct: 66  YQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGFASDAYIQNTLMNMYSN 122

Query: 153 CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV-RNLFLWTALVSG 211
           CG   +AR VFD +  K+ VSW  M+ AYA+     +A+++F +  +  NLF W  +++G
Sbjct: 123 CGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIASNLFCWNIMING 182

Query: 212 LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271
            V+  +  +A   F EM+  GV   D + ++S++ AC +   LELGK +H  +     E 
Sbjct: 183 HVEDSDYEEALSLFNEMQLSGVK-GDKVTMASLLIACTHLGALELGKWLHVYIEKEKIEV 241

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
            + +  A+VDMYAKC  I +A  +F  M  KDV++WT++IVG A  GQ  + L L+ EM 
Sbjct: 242 DVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQ 301

Query: 332 SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
            + VKP+ +TFVG++ ACSH GLV +G   F SM   YGI PS++HY C++D+L R+G +
Sbjct: 302 MSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRI 361

Query: 392 DEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451
            EAE+LI+ MP  PD      LLSAC+ H N  +  R A  L+ L P++  +Y+LLSN+Y
Sbjct: 362 AEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGGTYVLLSNIY 421

Query: 452 ASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELD 511
           +S   W+   K+R+LM    +KK PG S IE G   H F  G+ SHP   EI+E L ++ 
Sbjct: 422 SSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSEIYETLDDMM 481

Query: 512 AEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCG 571
             +K  GYVPD S VL DM++KEKE +L  HSE+LA+A+GLL + PGT +RVVKNLRVC 
Sbjct: 482 RRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIRVVKNLRVCS 541

Query: 572 DCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           DCH  MK IS +  REI+VRD  R+HHF  G CSC DFW
Sbjct: 542 DCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 580



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 31/205 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LH    KLG      + NTL++ Y  C  +  A  + ++M  +  VSWA+++ AY Q 
Sbjct: 95  KQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQW 154

Query: 83  NLPQKTISIFSTM-------------------------------LALDKLQPDHFVFASL 111
           +LP + I +F  M                               + L  ++ D    ASL
Sbjct: 155 DLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASL 214

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           + AC  LGA  LGK +H          D  + ++LVDMYAKCG   +A  VF  +  K+ 
Sbjct: 215 LIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDV 274

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQ 196
           ++WTA++   A  G+   A+E+F +
Sbjct: 275 MTWTALIVGLAMCGQGLKALELFHE 299


>gi|125588087|gb|EAZ28751.1| hypothetical protein OsJ_12773 [Oryza sativa Japonica Group]
          Length = 698

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 242/638 (37%), Positives = 368/638 (57%), Gaps = 41/638 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCD----------------- 52
           L  CA  Q     + +H+ ++KLGL    P+ N++++ YGKC                  
Sbjct: 65  LSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSV 124

Query: 53  --------------LVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                          +  A  L E MP R  VSW +++  YNQ  L  K + +FS ML  
Sbjct: 125 SSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHE 184

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
             + PD F   S++ AC +LG  R+GKQVHA  + +    +  V ++L+  YAK G   N
Sbjct: 185 SSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVEN 244

Query: 159 ARAVFD-SIKLK-NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS- 215
           AR + D S++   N +S+TA+L  Y + G  + A E+F     R++  WTA++ G  Q+ 
Sbjct: 245 ARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNG 304

Query: 216 RNE--IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
           RN+  ID F S I    E     +   L++++  CA+ A L+ GKQIH   I    E   
Sbjct: 305 RNDEAIDLFRSMITCGPEP----NSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSS 360

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
            +SNAI+ MYA+      A+ +F ++  RK+ ++WTS+IV  AQHGQ EE + L++EM+ 
Sbjct: 361 SVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLR 420

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
           AGV+P+ +T+VG++ ACSH G V +G++ +  +  ++ I P + HY C++DLL+R+G   
Sbjct: 421 AGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFS 480

Query: 393 EAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           EA+  I+ MP EPD   W +LLSAC+ H+N E+    A  LLS+ P +  +Y  ++NVY+
Sbjct: 481 EAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYS 540

Query: 453 SAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDA 512
           +   W   +++ K      V+KE G+S+       H+F A +  HP +D ++ +   +  
Sbjct: 541 ACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWE 600

Query: 513 EMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGD 572
           E+K  G+VPD  SVLHD++ + KE  L  HSE+LA+A+GL+ +   T LRV+KNLRVC D
Sbjct: 601 EIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCND 660

Query: 573 CHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           CH  +K IS++T REI+VRDATR+HHF+DG CSC D+W
Sbjct: 661 CHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 698



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 125/494 (25%), Positives = 222/494 (44%), Gaps = 76/494 (15%)

Query: 48  YGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV 107
           + K   +  A  +  EMP+RD VSW  ++   N+A    + I     M A D   P  F 
Sbjct: 2   FAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTA-DGFTPTQFT 60

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
             +++ +C    A  +G++VH+  V         V +S+++MY KCG    A  VF+ + 
Sbjct: 61  LTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMP 120

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
           +++  SW AM+S     GR   A  +FE  P R++  W A+++G  Q+  +  A   F  
Sbjct: 121 VRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSR 180

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI--ALGYESCLFISNAIVDMYAK 285
           M  E     D   ++S++ ACAN   + +GKQ+H  ++   + Y S   ++NA++  YAK
Sbjct: 181 MLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNS--QVTNALISTYAK 238

Query: 286 C---------------------------------SDIIAAKDIFGRMRRKDVVSWTSIIV 312
                                              D+ +A+++FG M  +DVV+WT++IV
Sbjct: 239 SGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIV 298

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL----FKSMIED 368
           G  Q+G+ +E + L+  M++ G +PN  T   ++  C+ +  +  G+++     +S++E 
Sbjct: 299 GYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQ 358

Query: 369 -----------YGITPSLQ----------------HYTCLLDLLSRSGHLDEAENLIKAM 401
                      Y  + S                   +T ++  L++ G  +EA  L + M
Sbjct: 359 SSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEM 418

Query: 402 ---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS---LKPEDPSSYILLSNVYASAA 455
                EPD  T+  +LSAC H      G R  + + +   + PE  S Y  + ++ A A 
Sbjct: 419 LRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPE-MSHYACMVDLLARAG 477

Query: 456 MWQHVSKVRKLMSV 469
           ++    +  + M V
Sbjct: 478 LFSEAQEFIRRMPV 491



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 2/138 (1%)

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           M+AK   +  A+ +F  M  +D VSWT ++VG  + G+  E +    +M + G  P + T
Sbjct: 1   MFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTADGFTPTQFT 60

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
              ++ +C+       GRK+  S +   G+   +     +L++  + G  + A  + + M
Sbjct: 61  LTNVLSSCAVTQAGAVGRKV-HSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERM 119

Query: 402 PFEPDEPTWAALLSACKH 419
           P      +W A++S   H
Sbjct: 120 PVR-SVSSWNAMVSLNTH 136


>gi|115455659|ref|NP_001051430.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|24899461|gb|AAN65031.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|108711328|gb|ABF99123.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549901|dbj|BAF13344.1| Os03g0775400 [Oryza sativa Japonica Group]
 gi|215741536|dbj|BAG98031.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 804

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 242/638 (37%), Positives = 368/638 (57%), Gaps = 41/638 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCD----------------- 52
           L  CA  Q     + +H+ ++KLGL    P+ N++++ YGKC                  
Sbjct: 171 LSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATTVFERMPVRSV 230

Query: 53  --------------LVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                          +  A  L E MP R  VSW +++  YNQ  L  K + +FS ML  
Sbjct: 231 SSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHE 290

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
             + PD F   S++ AC +LG  R+GKQVHA  + +    +  V ++L+  YAK G   N
Sbjct: 291 SSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVEN 350

Query: 159 ARAVFD-SIKLK-NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS- 215
           AR + D S++   N +S+TA+L  Y + G  + A E+F     R++  WTA++ G  Q+ 
Sbjct: 351 ARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNG 410

Query: 216 RNE--IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
           RN+  ID F S I    E     +   L++++  CA+ A L+ GKQIH   I    E   
Sbjct: 411 RNDEAIDLFRSMITCGPE----PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLEQSS 466

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
            +SNAI+ MYA+      A+ +F ++  RK+ ++WTS+IV  AQHGQ EE + L++EM+ 
Sbjct: 467 SVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLR 526

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
           AGV+P+ +T+VG++ ACSH G V +G++ +  +  ++ I P + HY C++DLL+R+G   
Sbjct: 527 AGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFS 586

Query: 393 EAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           EA+  I+ MP EPD   W +LLSAC+ H+N E+    A  LLS+ P +  +Y  ++NVY+
Sbjct: 587 EAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYS 646

Query: 453 SAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDA 512
           +   W   +++ K      V+KE G+S+       H+F A +  HP +D ++ +   +  
Sbjct: 647 ACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWE 706

Query: 513 EMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGD 572
           E+K  G+VPD  SVLHD++ + KE  L  HSE+LA+A+GL+ +   T LRV+KNLRVC D
Sbjct: 707 EIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCND 766

Query: 573 CHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           CH  +K IS++T REI+VRDATR+HHF+DG CSC D+W
Sbjct: 767 CHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 127/500 (25%), Positives = 226/500 (45%), Gaps = 76/500 (15%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+L+  + K   +  A  +  EMP+RD VSW  ++   N+A    + I     M A D  
Sbjct: 102 NSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTA-DGF 160

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P  F   +++ +C    A  +G++VH+  V         V +S+++MY KCG    A  
Sbjct: 161 TPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDSETATT 220

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF+ + +++  SW AM+S     GR   A  +FE  P R++  W A+++G  Q+  +  A
Sbjct: 221 VFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVSWNAMIAGYNQNGLDAKA 280

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI--ALGYESCLFISNAI 279
              F  M  E     D   ++S++ ACAN   + +GKQ+H  ++   + Y S   ++NA+
Sbjct: 281 LKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNS--QVTNAL 338

Query: 280 VDMYAKC---------------------------------SDIIAAKDIFGRMRRKDVVS 306
           +  YAK                                   D+ +A+++FG M  +DVV+
Sbjct: 339 ISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVA 398

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL----F 362
           WT++IVG  Q+G+ +E + L+  M++ G +PN  T   ++  C+ +  +  G+++     
Sbjct: 399 WTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAI 458

Query: 363 KSMIED-----------YGITPSLQ----------------HYTCLLDLLSRSGHLDEAE 395
           +S++E            Y  + S                   +T ++  L++ G  +EA 
Sbjct: 459 RSLLEQSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAV 518

Query: 396 NLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS---LKPEDPSSYILLSN 449
            L + M     EPD  T+  +LSAC H      G R  + + +   + PE  S Y  + +
Sbjct: 519 GLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPE-MSHYACMVD 577

Query: 450 VYASAAMWQHVSKVRKLMSV 469
           + A A ++    +  + M V
Sbjct: 578 LLARAGLFSEAQEFIRRMPV 597



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 109/476 (22%), Positives = 209/476 (43%), Gaps = 86/476 (18%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK----CGLPNNA 159
           DH+  A L++ C +      G+ +HA  V +       + ++L+  Y +     G   +A
Sbjct: 27  DHY--ARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDA 84

Query: 160 RAVFDSIKL--KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
           R +FD I L  +N  +W ++LS +A+SGR  DA  +F + P R+   WT +V GL ++  
Sbjct: 85  RRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGR 144

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             +A  + ++M  +G        L++++ +CA      +G+++H  V+ LG  SC+ ++N
Sbjct: 145 FGEAIKTLLDMTADGFTPTQ-FTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVAN 203

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDV-------------------------------VS 306
           ++++MY KC D   A  +F RM  + V                               VS
Sbjct: 204 SVLNMYGKCGDSETATTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPDRSIVS 263

Query: 307 WTSIIVGTAQHGQAEETLALYDEMV-SAGVKPNEVTFVGLIYACSHVGLVGKGRKLF--- 362
           W ++I G  Q+G   + L L+  M+  + + P+E T   ++ AC+++G V  G+++    
Sbjct: 264 WNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI 323

Query: 363 ------------KSMIEDYGITPSLQH-----------------YTCLLDLLSRSGHLDE 393
                        ++I  Y  + S+++                 +T LL+   + G ++ 
Sbjct: 324 LRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMES 383

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS--NVY 451
           A  +   M    D   W A++   + +   +    +   +++  PE P+SY L +  +V 
Sbjct: 384 AREMFGVMN-NRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPE-PNSYTLAAVLSVC 441

Query: 452 ASAAMWQHVSKV--RKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFE 505
           AS A   +  ++  R + S++E       + I         YA   S P    +F+
Sbjct: 442 ASLACLDYGKQIHCRAIRSLLEQSSSVSNAII-------TMYARSGSFPWARRMFD 490


>gi|125545880|gb|EAY92019.1| hypothetical protein OsI_13712 [Oryza sativa Indica Group]
          Length = 804

 Score =  477 bits (1227), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/638 (37%), Positives = 368/638 (57%), Gaps = 41/638 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQ-------------- 55
           L  CA  Q     + +H+ ++KLGL    P+ N++++ YGKC   +              
Sbjct: 171 LSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETASTVFERMPVRSV 230

Query: 56  -----------------YAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                             A  L E MP R  VSW +++  YNQ  L  K + +FS ML  
Sbjct: 231 SSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKALKLFSRMLHE 290

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
             + PD F   S++ AC +LG  R+GKQVHA  + +    +  V ++L+  YAK G   N
Sbjct: 291 SSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNSQVTNALISTYAKSGSVEN 350

Query: 159 ARAVFD-SIKLK-NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS- 215
           AR + D S++   N +S+TA+L  Y + G  + A E+F     R++  WTA++ G  Q+ 
Sbjct: 351 ARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNG 410

Query: 216 RNE--IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
           RN+  ID F S I    E     +   L++++  CA+ A L+ GKQIH   I    E   
Sbjct: 411 RNDEAIDLFRSMITCGPE----PNSYTLAAVLSVCASLACLDYGKQIHCRAIRSLLERSS 466

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
            +SNAI+ MYA+      A+ +F ++  RK+ ++WTS+IV  AQHGQ EE + L++EM+ 
Sbjct: 467 SVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAVGLFEEMLR 526

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
           AGV+P+ +T+VG++ ACSH G V +G++ +  +  ++ I P + HY C++DLL+R+G   
Sbjct: 527 AGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPEMSHYACMVDLLARAGLFS 586

Query: 393 EAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           EA+  I+ MP EPD   W +LLSAC+ H+N E+    A  LLS+ P +  +Y  ++NVY+
Sbjct: 587 EAQEFIRRMPVEPDAIAWGSLLSACRVHKNAELAELAAEKLLSIDPNNSGAYSAIANVYS 646

Query: 453 SAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDA 512
           +   W   +++ K      V+KE G+S+       H+F A +  HP +D ++ +   +  
Sbjct: 647 ACGRWSDAARIWKARKEKAVRKETGFSWTHIRSKIHVFGADDVVHPQRDAVYAMAARMWE 706

Query: 513 EMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGD 572
           E+K  G+VPD  SVLHD++ + KE  L  HSE+LA+A+GL+ +   T LRV+KNLRVC D
Sbjct: 707 EIKGAGFVPDLQSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRVMKNLRVCND 766

Query: 573 CHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           CH  +K IS++T REI+VRDATR+HHF+DG CSC D+W
Sbjct: 767 CHAAIKAISKVTDREIIVRDATRFHHFRDGLCSCKDYW 804



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 127/500 (25%), Positives = 226/500 (45%), Gaps = 76/500 (15%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+L+  + K   +  A  +  EMP+RD VSW  ++   N+A    + I     M A D  
Sbjct: 102 NSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGRFGEAIKTLLDMTA-DGF 160

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P  F   +++ +C    A  +G++VH+  V         V +S+++MY KCG    A  
Sbjct: 161 TPTQFTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVANSVLNMYGKCGDAETAST 220

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF+ + +++  SW AM+S     GR   A  +FE  P R++  W A+++G  Q+  +  A
Sbjct: 221 VFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVSWNAMIAGYNQNGLDAKA 280

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI--ALGYESCLFISNAI 279
              F  M  E     D   ++S++ ACAN   + +GKQ+H  ++   + Y S   ++NA+
Sbjct: 281 LKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYILRTEMAYNS--QVTNAL 338

Query: 280 VDMYAKC---------------------------------SDIIAAKDIFGRMRRKDVVS 306
           +  YAK                                   D+ +A+++FG M  +DVV+
Sbjct: 339 ISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMESAREMFGVMNNRDVVA 398

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL----F 362
           WT++IVG  Q+G+ +E + L+  M++ G +PN  T   ++  C+ +  +  G+++     
Sbjct: 399 WTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAAVLSVCASLACLDYGKQIHCRAI 458

Query: 363 KSMIED-----------YGITPSLQ----------------HYTCLLDLLSRSGHLDEAE 395
           +S++E            Y  + S                   +T ++  L++ G  +EA 
Sbjct: 459 RSLLERSSSVSNAIITMYARSGSFPWARRMFDQVCWRKETITWTSMIVALAQHGQGEEAV 518

Query: 396 NLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS---LKPEDPSSYILLSN 449
            L + M     EPD  T+  +LSAC H      G R  + + +   + PE  S Y  + +
Sbjct: 519 GLFEEMLRAGVEPDRITYVGVLSACSHAGFVNEGKRYYDQIKNEHQIAPE-MSHYACMVD 577

Query: 450 VYASAAMWQHVSKVRKLMSV 469
           + A A ++    +  + M V
Sbjct: 578 LLARAGLFSEAQEFIRRMPV 597



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 109/476 (22%), Positives = 209/476 (43%), Gaps = 86/476 (18%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK----CGLPNNA 159
           DH+  A L++ C +      G+ +HA  V +       + ++L+  Y +     G   +A
Sbjct: 27  DHY--ARLLQLCQTAANPGAGRAIHARAVKAGLLASAYLCNNLLSYYGETAGGAGGLRDA 84

Query: 160 RAVFDSIKL--KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
           R +FD I L  +N  +W ++LS +A+SGR  DA  +F + P R+   WT +V GL ++  
Sbjct: 85  RRLFDEIPLARRNVFTWNSLLSMFAKSGRLADARGVFAEMPERDAVSWTVMVVGLNRAGR 144

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             +A  + ++M  +G        L++++ +CA      +G+++H  V+ LG  SC+ ++N
Sbjct: 145 FGEAIKTLLDMTADGFTPTQ-FTLTNVLSSCAVTQAGAVGRKVHSFVVKLGLGSCVPVAN 203

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDV-------------------------------VS 306
           ++++MY KC D   A  +F RM  + V                               VS
Sbjct: 204 SVLNMYGKCGDAETASTVFERMPVRSVSSWNAMVSLNTHLGRMDLAESLFESMPGRSIVS 263

Query: 307 WTSIIVGTAQHGQAEETLALYDEMV-SAGVKPNEVTFVGLIYACSHVGLVGKGRKLF--- 362
           W ++I G  Q+G   + L L+  M+  + + P+E T   ++ AC+++G V  G+++    
Sbjct: 264 WNAMIAGYNQNGLDAKALKLFSRMLHESSMAPDEFTITSVLSACANLGNVRIGKQVHAYI 323

Query: 363 ------------KSMIEDYGITPSLQH-----------------YTCLLDLLSRSGHLDE 393
                        ++I  Y  + S+++                 +T LL+   + G ++ 
Sbjct: 324 LRTEMAYNSQVTNALISTYAKSGSVENARRIMDQSMETDLNVISFTALLEGYVKIGDMES 383

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS--NVY 451
           A  +   M    D   W A++   + +   +    +   +++  PE P+SY L +  +V 
Sbjct: 384 AREMFGVMN-NRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPE-PNSYTLAAVLSVC 441

Query: 452 ASAAMWQHVSKV--RKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFE 505
           AS A   +  ++  R + S++E       + I         YA   S P    +F+
Sbjct: 442 ASLACLDYGKQIHCRAIRSLLERSSSVSNAII-------TMYARSGSFPWARRMFD 490


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  476 bits (1225), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/589 (39%), Positives = 357/589 (60%), Gaps = 34/589 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H +I++ GL     +  +L+  Y KC  +  A  + + +P+++ V+W  ++  Y Q 
Sbjct: 168 QKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQ 227

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 + +  TM   + + P+   FAS+++ C +  A   GK+VH   + S +  +  V
Sbjct: 228 GQVDVALELLETMQQAE-VAPNKITFASILQGCTTPAALEHGKKVHRYIIQSGYGRELWV 286

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SL+ MY KCG    AR                               ++F   P R++
Sbjct: 287 VNSLITMYCKCGGLEEAR-------------------------------KLFSDLPHRDV 315

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WTA+V+G  Q     +A   F  M+++G+   D +  +S++ +C++ A L+ GK+IH 
Sbjct: 316 VTWTAMVTGYAQLGFHDEAINLFRRMQQQGIK-PDKMTFTSVLTSCSSPAFLQEGKRIHQ 374

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT-AQHGQAE 321
            ++  GY   +++ +A+V MYAKC  +  A  +F +M  ++VV+WT+II G  AQHG+  
Sbjct: 375 QLVHAGYNLDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCR 434

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L  +D+M   G+KP++VTF  ++ AC+HVGLV +GRK F+SM  DYGI P ++HY+C 
Sbjct: 435 EALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCF 494

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL R+GHL+EAEN+I +MPF P    W ALLSAC+ H + E G R A ++L L P+D 
Sbjct: 495 VDLLGRAGHLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDD 554

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            +Y+ LS++YA+A  ++   KVR++M   +V KEPG S+IE     H+F+  + SHP  +
Sbjct: 555 GAYVALSSIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPESE 614

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           +I+  L +L  ++K  GYVPDT  VLHD+++++KER LF HSERLA+ YGL+K+ PG  +
Sbjct: 615 QIYVELGKLTEQIKEMGYVPDTRFVLHDVDEEQKERILFSHSERLAITYGLMKTPPGMPI 674

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+VKNLRVCGDCH   K IS++  REI+ RDA R+HHF DG CSC DFW
Sbjct: 675 RIVKNLRVCGDCHTATKFISKVVGREIIARDAQRFHHFADGVCSCGDFW 723



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 118/418 (28%), Positives = 211/418 (50%), Gaps = 39/418 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CAR +     + +HA I+K G+     L NTL+  Y KC  +  A  + + +  R+ 
Sbjct: 54  LQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNI 113

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++ A+   N   +    + TM  L   +PD   F SL+ A  +    +LG++VH 
Sbjct: 114 VSWTAMIEAFVAGNKNLEAFKCYETM-KLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHM 172

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V +    +  V +SLV MYAKCG  + AR +FD +  KN V+WT +++ YA+ G+   
Sbjct: 173 EIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDV 232

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+E+ E                    + E+                 + +  +SI+  C 
Sbjct: 233 ALELLE-----------------TMQQAEVAP---------------NKITFASILQGCT 260

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
             A LE GK++H  +I  GY   L++ N+++ MY KC  +  A+ +F  +  +DVV+WT+
Sbjct: 261 TPAALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTA 320

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-D 368
           ++ G AQ G  +E + L+  M   G+KP+++TF  ++ +CS    + +G+++ + ++   
Sbjct: 321 MVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAFLQEGKRIHQQLVHAG 380

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC--KHHRNTE 424
           Y +   LQ  + L+ + ++ G +D+A  +   M  E +   W A+++ C  +H R  E
Sbjct: 381 YNLDVYLQ--SALVSMYAKCGSMDDASLVFNQMS-ERNVVAWTAIITGCCAQHGRCRE 435



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 166/331 (50%), Gaps = 35/331 (10%)

Query: 86  QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS 145
           ++ + I +TM+ L   +    VF  L++ C  L +   G++VHA  + S    +  ++++
Sbjct: 29  KEALGIMNTMI-LQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENT 87

Query: 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLW 205
           L+ MYAKCG   +AR VFDSI+ +N VSWTAM+ A+                        
Sbjct: 88  LLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAF------------------------ 123

Query: 206 TALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265
                  V     ++AF  +  M+  G    D +   S++ A  N  +L+LG+++H  ++
Sbjct: 124 -------VAGNKNLEAFKCYETMKLAGCK-PDKVTFVSLLNAFTNPELLQLGQKVHMEIV 175

Query: 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA 325
             G E    +  ++V MYAKC DI  A+ IF R+  K+VV+WT +I G AQ GQ +  L 
Sbjct: 176 EAGLELEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALE 235

Query: 326 LYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385
           L + M  A V PN++TF  ++  C+    +  G+K+ + +I+  G    L     L+ + 
Sbjct: 236 LLETMQQAEVAPNKITFASILQGCTTPAALEHGKKVHRYIIQS-GYGRELWVVNSLITMY 294

Query: 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            + G L+EA  L   +P   D  TW A+++ 
Sbjct: 295 CKCGGLEEARKLFSDLPHR-DVVTWTAMVTG 324



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 48/221 (21%), Positives = 98/221 (44%), Gaps = 6/221 (2%)

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G+ +E L + + M+  G +     F GL+  C+ +  + +GR++  ++++  GI P+   
Sbjct: 26  GRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKS-GIQPNRYL 84

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA-CKHHRNTEMGTRVANHLLSL 436
              LL + ++ G L +A  +  ++  + +  +W A++ A    ++N E         L+ 
Sbjct: 85  ENTLLSMYAKCGSLTDARRVFDSIR-DRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAG 143

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEP--GYSYIE-FGKGSHIFYAG 493
              D  +++ L N + +  + Q   KV   +    ++ EP  G S +  + K   I  A 
Sbjct: 144 CKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKAR 203

Query: 494 ETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE 534
                L ++     T L A   ++G V     +L  M+Q E
Sbjct: 204 VIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAE 244


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  476 bits (1224), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/573 (40%), Positives = 355/573 (61%), Gaps = 19/573 (3%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+  Y +   +  A  L + MP RD +SW  ++T Y Q  L  +   +F  +      
Sbjct: 219 NCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPI---- 274

Query: 102 QPDHFVFASLVKACGSLG----ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
             D F + ++V      G    ATR+ +++           ++V  ++++  Y +     
Sbjct: 275 -RDVFAWTAMVSGFVQNGMLDEATRIFEEMPE--------KNEVSWNAMIAGYVQSQQIE 325

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
            AR +FD +  +N+ SW  M++ YA+ G    A  +F++ P R+   W A++SG  QS  
Sbjct: 326 KARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQ 385

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             +A + FI+M+R+G  I++   L+  + +CA  A LELGKQ+HG ++  G+++     N
Sbjct: 386 SEEALHLFIKMKRDG-GILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGN 444

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           A++ MY KC  I  A D+F  +  KD+VSW ++I G A+HG  +E LAL++ M    +KP
Sbjct: 445 ALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKP 503

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           ++VT VG++ ACSH GLV KG + F SM ++YGIT + +HYTC++DLL R+G LDEA NL
Sbjct: 504 DDVTLVGVLSACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNL 563

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           +K+MPF PD  TW ALL A + H +TE+G + A  +  ++P++   Y+LLSN+YA++  W
Sbjct: 564 MKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRW 623

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
           + V ++R  M    VKK PGYS++E    +HIF  G+ SHP  + I+  L ELD E+K+ 
Sbjct: 624 REVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKD 683

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           G+V  T  VLHD+E++EKE  L +HSE+LAVA+G+L   PG  +RV+KNLRVC DCH  +
Sbjct: 684 GFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAI 743

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K IS+IT+R+I+VRD+ R+HHF +G CSC D+W
Sbjct: 744 KHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 109/471 (23%), Positives = 194/471 (41%), Gaps = 116/471 (24%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +I  Y   +    A  + E+MP RD +SW  +L+ Y                      
Sbjct: 95  NAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGY---------------------- 132

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNAR 160
                     VK  G+L A R      A F   P  + DVV  ++++  +A+ G    AR
Sbjct: 133 ----------VKN-GNLSAAR------ALFNQMP--EKDVVSWNAMLSGFAQNGFVEEAR 173

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSG----------------------------RKK---D 189
            +FD + +KN +SW  +LSAY ++G                            RKK   D
Sbjct: 174 KIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDD 233

Query: 190 AMEIFEQAPVRN-------------------------------LFLWTALVSGLVQSRNE 218
           A  +F++ PVR+                               +F WTA+VSG VQ+   
Sbjct: 234 ARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGML 293

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            +A   F EM  +     + +  ++++        +E  +++   + +    S     N 
Sbjct: 294 DEATRIFEEMPEK-----NEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSW----NT 344

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           +V  YA+C +I  AK +F  M ++D +SW ++I G AQ GQ+EE L L+ +M   G   N
Sbjct: 345 MVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILN 404

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
                  + +C+ +  +  G++L   +++  G          LL +  + G ++EA ++ 
Sbjct: 405 RSALACALSSCAEIAALELGKQLHGRLVK-AGFQTGYIAGNALLAMYGKCGSIEEAFDVF 463

Query: 399 KAMPFEPDEPTWAALLSA-CKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
           + +  E D  +W  +++   +H    E      +  +++KP+D +   +LS
Sbjct: 464 EDIT-EKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLS 513



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 50/245 (20%)

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           V W   +SAY R G+ + A+ +F     R+   + A++SG + S N+ D           
Sbjct: 61  VKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYL-SNNKFD----------- 108

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
                           CA     ++  +             L   N ++  Y K  ++ A
Sbjct: 109 ----------------CARKVFEKMPDRD------------LISWNVMLSGYVKNGNLSA 140

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           A+ +F +M  KDVVSW +++ G AQ+G  EE   ++D+M+   VK NE+++ GL+ A   
Sbjct: 141 ARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML---VK-NEISWNGLLSAYVQ 196

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
            G +   R+LF S + D+ I      + CL+    R   LD+A +L   MP   D+ +W 
Sbjct: 197 NGRIEDARRLFDSKM-DWEIVS----WNCLMGGYVRKKRLDDARSLFDRMPVR-DKISWN 250

Query: 412 ALLSA 416
            +++ 
Sbjct: 251 IMITG 255



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 88/195 (45%), Gaps = 8/195 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K LH +++K G        N L+  YGKC  ++ A  + E++ ++D 
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ-VH 128
           VSW +++  Y +    ++ +++F +M     ++PD      ++ AC   G    G +  +
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESMKM--TIKPDDVTLVGVLSACSHTGLVDKGMEYFN 529

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARSGR- 186
           + +       +    + ++D+  + G  + A  +  S+    ++ +W A+L A    G  
Sbjct: 530 SMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDT 589

Query: 187 ---KKDAMEIFEQAP 198
              +K A ++FE  P
Sbjct: 590 ELGEKAAEKVFEMEP 604


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  475 bits (1223), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/569 (40%), Positives = 342/569 (60%), Gaps = 10/569 (1%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+  + K   +  A    + M  RD VSW +I+T Y Q     +   +F         
Sbjct: 218 NCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDE------- 270

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P H VF       G +   R+ ++    F   P   ++V  ++++  Y +      A+ 
Sbjct: 271 SPVHDVFTWTAMVSGYI-QNRMVEEARELFDRMPE-RNEVSWNAMLAGYVQGERVEMAKE 328

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +FD +  +N  +W  M++ YA+ G+  +A  +F++ P R+   W A+++G  QS +  +A
Sbjct: 329 LFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEA 388

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F+ M REG  + +    SS +  CA+   LELGKQ+HG ++  GYE+  F+ NA++ 
Sbjct: 389 LRLFVLMEREGGRL-NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL 447

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  I  A D+F  M  KD+VSW ++I G ++HG  EE L  ++ M   G+KP++ T
Sbjct: 448 MYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDAT 507

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
            V ++ ACSH GLV KGR+ F +M +DYG+ P+ QHY C++DLL R+G L+EA NL+K M
Sbjct: 508 MVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNM 567

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           PFEPD   W  LL A + H NTE+    A+ + +++PE+   Y+LLSN+YAS+  W  V 
Sbjct: 568 PFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVG 627

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           K+R  M    VKK PGYS+IE    +H F  G+  HP KDEIF  L +LD  MK+ GYV 
Sbjct: 628 KLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEDLDLRMKKAGYVS 687

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
            TS VLHD+E++EKER + +HSERLAVAYG+++   G  +RV+KNLRVC DCH  +K ++
Sbjct: 688 KTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMA 747

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++T R I++RD  R+HHFKDG CSC D+W
Sbjct: 748 KVTGRLIILRDNNRFHHFKDGSCSCGDYW 776



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 109/493 (22%), Positives = 197/493 (39%), Gaps = 84/493 (17%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +I  Y +    + A  L +EMP+RD VSW  ++  Y +     K   +F  M   D  
Sbjct: 94  NAMISGYLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFERMPERD-- 151

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
                                              C  + + S     YA+ G  ++AR 
Sbjct: 152 ----------------------------------VCSWNTILSG----YAQNGCVDDARR 173

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VFD +  KN VSW A+LSAY ++ + ++A  +F       L  W  L+ G V+ +  ++A
Sbjct: 174 VFDRMPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEA 233

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC---LFISNA 278
              F  M+     + D +  ++I+   A    ++  +Q+         ES    +F   A
Sbjct: 234 RQFFDSMK-----VRDVVSWNTIITGYAQNGEIDEARQLFD-------ESPVHDVFTWTA 281

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           +V  Y +   +  A+++F RM  ++ VSW +++ G  Q  + E    L+D M    V   
Sbjct: 282 MVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVS-- 339

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
             T+  +I   +  G + + + LF  M +   ++     +  ++   S+SGH  EA  L 
Sbjct: 340 --TWNTMITGYAQCGKISEAKNLFDKMPKRDPVS-----WAAMIAGYSQSGHSYEALRLF 392

Query: 399 KAMPFEP---DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
             M  E    +  ++++ LS C      E+G ++   L+    E        +  +   A
Sbjct: 393 VLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYE--------TGCFVGNA 444

Query: 456 MWQHVSKVRKLMSVMEVKKE-PGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEM 514
           +     K   +    ++ KE  G   + +    +   AG + H   +E           M
Sbjct: 445 LLLMYCKCGSIEEANDLFKEMAGKDIVSW----NTMIAGYSRHGFGEEALRFFE----SM 496

Query: 515 KRRGYVPDTSSVL 527
           KR G  PD ++++
Sbjct: 497 KREGLKPDDATMV 509



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/322 (20%), Positives = 123/322 (38%), Gaps = 84/322 (26%)

Query: 174 WTAMLSAYARSGRKKDAMEI-------------------------------FEQAPVRNL 202
           W   +S+Y R+GR  +A+ +                               F++ P R+L
Sbjct: 62  WNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMPERDL 121

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN------------ 250
             W  ++ G V++RN   A   F  M    V   + ++       C +            
Sbjct: 122 VSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEK 181

Query: 251 ---------FAVLELGKQIHGLVIALGYESCLFIS-NAIVDMYAKCSDIIAAKDIFGRMR 300
                     A ++  K     V+    E+   +S N ++  + K   I+ A+  F  M+
Sbjct: 182 NDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMK 241

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            +DVVSW +II G AQ+G+ +E   L+DE     V     T+  ++       +V + R+
Sbjct: 242 VRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDV----FTWTAMVSGYIQNRMVEEARE 297

Query: 361 LFKSMIED------------------------YGITP--SLQHYTCLLDLLSRSGHLDEA 394
           LF  M E                         + + P  ++  +  ++   ++ G + EA
Sbjct: 298 LFDRMPERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEA 357

Query: 395 ENLIKAMPFEPDEPTWAALLSA 416
           +NL   MP + D  +WAA+++ 
Sbjct: 358 KNLFDKMP-KRDPVSWAAMIAG 378



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 73/338 (21%), Positives = 140/338 (41%), Gaps = 38/338 (11%)

Query: 4   SHYLHRLRVCARHQIALTV-KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
           S +   L  CA   +AL + K LH +++K G      + N L+  Y KC  ++ A+ L +
Sbjct: 405 SSFSSALSTCA-DVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFK 463

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
           EM  +D VSW +++  Y++    ++ +  F +M   + L+PD     +++ AC   G   
Sbjct: 464 EMAGKDIVSWNTMIAGYSRHGFGEEALRFFESM-KREGLKPDDATMVAVLSACSHTGLVD 522

Query: 123 LGKQ-VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
            G+Q  H          +    + +VD+  + GL   A  +  ++  + ++  W  +L A
Sbjct: 523 KGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTLLGA 582

Query: 181 YARSGR----KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
               G     +  A +IF   P  N  ++  L +    S    D     + MR +GV  V
Sbjct: 583 SRVHGNTELAETAADKIFAMEP-ENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKV 641

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA--KD 294
                         ++ +E+  + H   +               D +    D I A  +D
Sbjct: 642 ------------PGYSWIEIQNKTHTFSVG--------------DEFHPEKDEIFAFLED 675

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           +  RM++   VS TS+++   +  + E  +  + E ++
Sbjct: 676 LDLRMKKAGYVSKTSVVLHDVEEEEKERMVRYHSERLA 713


>gi|224066034|ref|XP_002302000.1| predicted protein [Populus trichocarpa]
 gi|222843726|gb|EEE81273.1| predicted protein [Populus trichocarpa]
          Length = 797

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 245/632 (38%), Positives = 357/632 (56%), Gaps = 46/632 (7%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCD---------LVQYAHHLLEEMPQRDHVSWA 73
           + LH  ++K G      + N LI +Y KC          L+  A  L +EMP RD +SW 
Sbjct: 168 QQLHCAVVKSGTGFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWT 227

Query: 74  SILTAYNQAN-------------------------------LPQKTISIFSTMLALDKLQ 102
           +I+T Y + N                               L  +   +F  M+ + K+Q
Sbjct: 228 TIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMI-MSKIQ 286

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACF---VLSPFCDDDV-VKSSLVDMYAKCGLPNN 158
            D F F S++  C + G  RLGK++HA F   V +P  D  + V ++L+  Y KCG  + 
Sbjct: 287 LDEFTFTSVISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDI 346

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A+ +F+ +  ++ VSW  +LS Y       +A   F + P +N+  W  ++SGL Q    
Sbjct: 347 AQEIFNKMPERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFA 406

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            +A   F  M+ +G +  D     +I+ +C+    L+ G+Q+H  V+  GYES L   NA
Sbjct: 407 EEALKFFNRMKLQGFEPCDYAFAGAII-SCSVLGSLKHGRQLHAQVVRYGYESSLSAGNA 465

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++ MYA+C  + AA  +F  M   D +SW ++I    QHGQ  + + L++EM+  G+ P+
Sbjct: 466 LITMYARCGVVDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFEEMLKEGILPD 525

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
            ++F+ +I ACSH GLV +GRK F SM   YG+ P  +HY  ++DLL R+G   EA+ ++
Sbjct: 526 RISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEEHYARIIDLLCRAGKFSEAKEVM 585

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
           ++MPFEP  P W ALL+ C+ H N ++G   A  L  LKP+   +Y+LLSN+YA A  W 
Sbjct: 586 ESMPFEPGAPIWEALLAGCRIHGNIDLGIEAAERLFELKPQHDGTYVLLSNMYAVAGQWN 645

Query: 459 HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
            ++KVRKLM    VKKEPG S+IE     H F  G+ +HP   +I+  L +L  EM++ G
Sbjct: 646 DMAKVRKLMRDRGVKKEPGCSWIEVENKVHSFLVGDANHPEVRQIYNYLEQLVLEMRKIG 705

Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
           YVPDT  VLHD+E   KE +L  HSE+LAVAYG +K   G  +RV KNLR+CGDCH   K
Sbjct: 706 YVPDTKCVLHDVESDLKEHELSTHSEKLAVAYGFMKLPHGATVRVFKNLRICGDCHNAFK 765

Query: 579 MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +S++  REIVVRD  R+HHF+DGKCSC D+W
Sbjct: 766 FMSKVVGREIVVRDGKRFHHFRDGKCSCGDYW 797



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 123/487 (25%), Positives = 208/487 (42%), Gaps = 83/487 (17%)

Query: 13  CARHQIALTV-KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ----- 66
           C +  I+ ++ + +HA +I  G    G + N LID Y K   + YA +L +E+PQ     
Sbjct: 22  CLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSKSSKLNYARYLFDEIPQPDIVA 81

Query: 67  ----------------------------RDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                                       RD V + +++TAY+  +     I +F  M   
Sbjct: 82  RTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMITAYSHNHDGHAAIELFCDM-QR 140

Query: 99  DKLQPDHFVFASLVKACGSLGAT-RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC---- 153
           D  +PD++ F S++ A   +    +  +Q+H   V S       V ++L+  Y KC    
Sbjct: 141 DNFRPDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGTGFVTSVLNALISSYVKCAASP 200

Query: 154 -----GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
                 L   AR +FD +  ++ +SWT +++ Y ++     A E       +    W A+
Sbjct: 201 SAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDLDAAKEFLNGTSKKLGVAWNAM 260

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL- 267
           +SG       ++AF  F +M    + + D    +S++  CAN     LGK++H   +   
Sbjct: 261 ISGYAHRGLYLEAFEMFRKMIMSKIQL-DEFTFTSVISVCANAGCFRLGKEMHAYFLKTV 319

Query: 268 ---GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI-------------- 310
                +  + ++NA++  Y KC  +  A++IF +M  +D+VSW  I              
Sbjct: 320 ANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMPERDLVSWNIILSGYVNVRCMDEAK 379

Query: 311 -----------------IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
                            I G AQ G AEE L  ++ M   G +P +  F G I +CS +G
Sbjct: 380 SFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNRMKLQGFEPCDYAFAGAIISCSVLG 439

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
            +  GR+L   ++  YG   SL     L+ + +R G +D A  L   MP   D  +W A+
Sbjct: 440 SLKHGRQLHAQVVR-YGYESSLSAGNALITMYARCGVVDAAHCLFINMPC-VDAISWNAM 497

Query: 414 LSACKHH 420
           ++A   H
Sbjct: 498 IAALGQH 504



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 161/370 (43%), Gaps = 50/370 (13%)

Query: 95  MLALDKLQPDHFVFASLVKAC--GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK 152
           M   D ++     + SL++ C   S  +  L + VHA  + S F     + + L+D+Y+K
Sbjct: 1   MTTPDSIRTAANRYGSLLQICCLQSPISYSLARPVHAHMIASGFQPRGHILNRLIDIYSK 60

Query: 153 CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV--RNLFLWTALVS 210
               N AR +FD I   + V+ T +++AY+ +G  K + +IF   P+  R+   + A+++
Sbjct: 61  SSKLNYARYLFDEIPQPDIVARTTLIAAYSAAGDLKLSRKIFSDTPLGMRDSVFYNAMIT 120

Query: 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL-GKQIHGLVIALGY 269
               + +   A   F +M+R+     D    +S++GA A  A  E   +Q+H  V+  G 
Sbjct: 121 AYSHNHDGHAAIELFCDMQRDNFR-PDNYTFTSVLGALALVAEKEKHCQQLHCAVVKSGT 179

Query: 270 ESCLFISNAIVDMYAKCSD---------IIAAKDIFGRMRRKDVVSWTSIIV-------- 312
                + NA++  Y KC+          +  A+ +F  M  +D +SWT+II         
Sbjct: 180 GFVTSVLNALISSYVKCAASPSAQSSSLMAEARKLFDEMPNRDELSWTTIITGYVKNNDL 239

Query: 313 -----------------------GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349
                                  G A  G   E   ++ +M+ + ++ +E TF  +I  C
Sbjct: 240 DAAKEFLNGTSKKLGVAWNAMISGYAHRGLYLEAFEMFRKMIMSKIQLDEFTFTSVISVC 299

Query: 350 SHVGLVGKGRKL---FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
           ++ G    G+++   F   + +     ++     L+    + G +D A+ +   MP E D
Sbjct: 300 ANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMP-ERD 358

Query: 407 EPTWAALLSA 416
             +W  +LS 
Sbjct: 359 LVSWNIILSG 368



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 143/348 (41%), Gaps = 68/348 (19%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYG----PLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           + VCA        K +HA  +K   +       P+ N LI  Y KC  V  A  +  +MP
Sbjct: 296 ISVCANAGCFRLGKEMHAYFLKTVANPAPDVAMPVNNALITFYWKCGKVDIAQEIFNKMP 355

Query: 66  QRDHVSWASILTAYNQA-----------NLPQKTISIFSTMLA----------------- 97
           +RD VSW  IL+ Y               +P+K I  +  M++                 
Sbjct: 356 ERDLVSWNIILSGYVNVRCMDEAKSFFNEMPEKNILSWIIMISGLAQIGFAEEALKFFNR 415

Query: 98  --LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
             L   +P  + FA  + +C  LG+ + G+Q+HA  V   +       ++L+ MYA+CG+
Sbjct: 416 MKLQGFEPCDYAFAGAIISCSVLGSLKHGRQLHAQVVRYGYESSLSAGNALITMYARCGV 475

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
            + A  +F ++   +++SW AM++A  + G+   A+E+FE                    
Sbjct: 476 VDAAHCLFINMPCVDAISWNAMIAALGQHGQGTQAIELFE-------------------- 515

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ-IHGLVIALGYESCLF 274
                      EM +EG+ + D +   +++ AC++  +++ G++    +    G      
Sbjct: 516 -----------EMLKEGI-LPDRISFLTVISACSHAGLVKEGRKYFDSMHNVYGVNPDEE 563

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAE 321
               I+D+  +      AK++   M        W +++ G   HG  +
Sbjct: 564 HYARIIDLLCRAGKFSEAKEVMESMPFEPGAPIWEALLAGCRIHGNID 611


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 237/569 (41%), Positives = 351/569 (61%), Gaps = 33/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT+I    +C +++ +  L   + +RD +SW  ++T   Q  L ++ + +F  M  L   
Sbjct: 208 NTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREM-RLAGF 266

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             D F F S++ ACGSL A   GKQ+HA  + +   D+  V S+LVDMY+KC      R+
Sbjct: 267 AMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKC------RS 320

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +                         K A  +F++ P +N+  WTA++ G  Q+    +A
Sbjct: 321 I-------------------------KSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEA 355

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F EM+R GV+  D   L S++ +CAN A LE G Q H   +  G  S + +SNA++ 
Sbjct: 356 VKIFFEMQRNGVE-PDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITVSNALIT 414

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           +Y KC     +  +F  M  +D VSWT+++ G AQ G+A ET+ L++ M++ G+KP+ VT
Sbjct: 415 LYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVT 474

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+G++ ACS  GLV KG + F+SMI+++GI P + H TC++DLL R+G L+EA N I  M
Sbjct: 475 FIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNM 534

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P  PD   WA LLS+C+ H + E+G   A+ L++L+P++P+SY+LLS++YAS   W  V+
Sbjct: 535 PCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVA 594

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           ++R+ M    V+KEPGYS+I++    H+F A + S P   +I+  L +L+ +M   GYVP
Sbjct: 595 QLRRGMRDKRVRKEPGYSWIKYKGKVHVFSADDQSSPFLGQIYAELEKLNYKMIEEGYVP 654

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           D SSVLHD+E+ EK + L  HSE+LA+A+GL+   PG  +RV+KNLRVCGDCH   K IS
Sbjct: 655 DMSSVLHDVEESEKIKMLNHHSEKLAIAFGLIFVPPGLPIRVIKNLRVCGDCHNATKFIS 714

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +IT+REI+VRDA R+H FKDG CSC DFW
Sbjct: 715 KITQREILVRDAVRFHLFKDGTCSCGDFW 743



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 128/445 (28%), Positives = 219/445 (49%), Gaps = 36/445 (8%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           ++Y   L++C   Q     K LH  I+K        L N LI AY K   + YAHH+ + 
Sbjct: 6   NYYASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDH 65

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD------------------------ 99
           +PQ +  SW +IL+ Y++  L  +   IF+ M   D                        
Sbjct: 66  IPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVY 125

Query: 100 -------KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK 152
                   +  +   F++++  C       LG+Q++   +   F  D  V S LVDMY K
Sbjct: 126 KLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTK 185

Query: 153 CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGL 212
            GL  +A+  FD +  +N V    M++   R G  +++  +F     R+   WT +++GL
Sbjct: 186 LGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGL 245

Query: 213 VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC 272
           +Q+  E +A   F EMR  G  + D     S++ AC +   L  GKQIH  VI   ++  
Sbjct: 246 MQNGLEREALDMFREMRLAGFAM-DQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDN 304

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           +F+ +A+VDMY+KC  I +A+ +F RM +K+V+SWT+++VG  Q+G +EE + ++ EM  
Sbjct: 305 VFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQR 364

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLF-KSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
            GV+P++ T   +I +C+++  + +G +   ++++   G+   +     L+ L  + G  
Sbjct: 365 NGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVS--GLISFITVSNALITLYGKCGST 422

Query: 392 DEAENLIKAMPFEPDEPTWAALLSA 416
           + +  L   M    DE +W ALL+ 
Sbjct: 423 ENSHRLFTEMNIR-DEVSWTALLAG 446



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 142/307 (46%), Gaps = 47/307 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HA +I+        + + L+D Y KC  ++ A  + + MPQ++ +SW ++L  Y Q 
Sbjct: 290 KQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQN 349

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ + IF  M   + ++PD F   S++ +C +L +   G Q H   ++S       V
Sbjct: 350 GFSEEAVKIFFEM-QRNGVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLISFITV 408

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+ +Y KCG   N+  +F  + +++ VSWTA+L+ YA+ G+  + + +FE+      
Sbjct: 409 SNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFER------ 462

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI-- 260
                L  GL                + +GV  +       ++ AC+   ++E G Q   
Sbjct: 463 ----MLAHGL----------------KPDGVTFI------GVLSACSRAGLVEKGLQYFE 496

Query: 261 -----HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGT 314
                HG++  + + +C      I+D+  +   +  A++    M    DVV W +++   
Sbjct: 497 SMIKEHGIMPIVDHCTC------IIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSC 550

Query: 315 AQHGQAE 321
             HG  E
Sbjct: 551 RVHGDME 557


>gi|449439555|ref|XP_004137551.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/573 (40%), Positives = 354/573 (61%), Gaps = 19/573 (3%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+  Y +   +  A  L + MP RD +SW  ++T Y Q  L  +   +F  +      
Sbjct: 219 NCLMGGYVRKKRLDDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPI---- 274

Query: 102 QPDHFVFASLVKACGSLG----ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
             D F + ++V      G    ATR+ +++           ++V  ++++  Y +     
Sbjct: 275 -RDVFAWTAMVSGFVQNGMLDEATRIFEEMPE--------KNEVSWNAMIAGYVQSQQIE 325

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
            AR +FD +  +N+ SW  M++ YA+ G    A  +F++ P R+   W A++SG  QS  
Sbjct: 326 KARELFDQMPSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQ 385

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             +A + FI+M+R+G  I++   L+  + +CA  A LELGKQ+HG ++  G+++     N
Sbjct: 386 SEEALHLFIKMKRDG-GILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGN 444

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           A++ MY KC  I  A D+F  +  KD+VSW ++I G A+HG  +E LAL++ M    +KP
Sbjct: 445 ALLAMYGKCGSIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKP 503

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           ++VT VG++ ACSH G V KG + F SM ++YGIT + +HYTC++DLL R+G LDEA NL
Sbjct: 504 DDVTLVGVLSACSHTGFVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNL 563

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           +K+MPF PD  TW ALL A + H +TE+G + A  +  ++P++   Y+LLSN+YA++  W
Sbjct: 564 MKSMPFYPDAATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRW 623

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
           + V ++R  M    VKK PGYS++E    +HIF  G+ SHP  + I+  L ELD E+K+ 
Sbjct: 624 REVREMRSKMRDKGVKKVPGYSWVEIQNKTHIFTVGDCSHPEAERIYAYLEELDLELKKD 683

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           G+V  T  VLHD+E++EKE  L +HSE+LAVA+G+L   PG  +RV+KNLRVC DCH  +
Sbjct: 684 GFVSSTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILSIPPGRPIRVIKNLRVCEDCHNAI 743

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K IS+IT+R+I+VRD+ R+HHF +G CSC D+W
Sbjct: 744 KHISKITQRQIIVRDSNRFHHFSEGSCSCGDYW 776



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 109/471 (23%), Positives = 194/471 (41%), Gaps = 116/471 (24%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +I  Y   +    A  + E+MP RD +SW  +L+ Y                      
Sbjct: 95  NAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGY---------------------- 132

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNAR 160
                     VK  G+L A R      A F   P  + DVV  ++++  +A+ G    AR
Sbjct: 133 ----------VKN-GNLSAAR------ALFNQMP--EKDVVSWNAMLSGFAQNGFVEEAR 173

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSG----------------------------RKK---D 189
            +FD + +KN +SW  +LSAY ++G                            RKK   D
Sbjct: 174 KIFDQMLVKNEISWNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDD 233

Query: 190 AMEIFEQAPVRN-------------------------------LFLWTALVSGLVQSRNE 218
           A  +F++ PVR+                               +F WTA+VSG VQ+   
Sbjct: 234 ARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGML 293

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            +A   F EM  +     + +  ++++        +E  +++   + +    S     N 
Sbjct: 294 DEATRIFEEMPEK-----NEVSWNAMIAGYVQSQQIEKARELFDQMPSRNTSSW----NT 344

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           +V  YA+C +I  AK +F  M ++D +SW ++I G AQ GQ+EE L L+ +M   G   N
Sbjct: 345 MVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILN 404

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
                  + +C+ +  +  G++L   +++  G          LL +  + G ++EA ++ 
Sbjct: 405 RSALACALSSCAEIAALELGKQLHGRLVK-AGFQTGYIAGNALLAMYGKCGSIEEAFDVF 463

Query: 399 KAMPFEPDEPTWAALLSA-CKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
           + +  E D  +W  +++   +H    E      +  +++KP+D +   +LS
Sbjct: 464 EDIT-EKDIVSWNTMIAGYARHGFGKEALALFESMKMTIKPDDVTLVGVLS 513



 Score = 82.0 bits (201), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 50/245 (20%)

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           V W   +SAY R G+ + A+ +F     R+   + A++SG + S N+ D           
Sbjct: 61  VKWNRKISAYMRKGQCESALSVFNGMRRRSTVTYNAMISGYL-SNNKFD----------- 108

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
                           CA     ++  +             L   N ++  Y K  ++ A
Sbjct: 109 ----------------CARKVFEKMPDRD------------LISWNVMLSGYVKNGNLSA 140

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           A+ +F +M  KDVVSW +++ G AQ+G  EE   ++D+M+   VK NE+++ GL+ A   
Sbjct: 141 ARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFDQML---VK-NEISWNGLLSAYVQ 196

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
            G +   R+LF S + D+ I      + CL+    R   LD+A +L   MP   D+ +W 
Sbjct: 197 NGRIEDARRLFDSKM-DWEIVS----WNCLMGGYVRKKRLDDARSLFDRMPVR-DKISWN 250

Query: 412 ALLSA 416
            +++ 
Sbjct: 251 IMITG 255



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/195 (22%), Positives = 88/195 (45%), Gaps = 8/195 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K LH +++K G        N L+  YGKC  ++ A  + E++ ++D 
Sbjct: 412 LSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCGSIEEAFDVFEDITEKDI 471

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ-VH 128
           VSW +++  Y +    ++ +++F +M     ++PD      ++ AC   G    G +  +
Sbjct: 472 VSWNTMIAGYARHGFGKEALALFESMKM--TIKPDDVTLVGVLSACSHTGFVDKGMEYFN 529

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARSGR- 186
           + +       +    + ++D+  + G  + A  +  S+    ++ +W A+L A    G  
Sbjct: 530 SMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALLGASRIHGDT 589

Query: 187 ---KKDAMEIFEQAP 198
              +K A ++FE  P
Sbjct: 590 ELGEKAAEKVFEMEP 604


>gi|15235498|ref|NP_192184.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213324|sp|Q9SY02.1|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750
 gi|4263522|gb|AAD15348.1| hypothetical protein [Arabidopsis thaliana]
 gi|7269760|emb|CAB77760.1| hypothetical protein [Arabidopsis thaliana]
 gi|332656824|gb|AEE82224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 781

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/569 (40%), Positives = 342/569 (60%), Gaps = 10/569 (1%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+  + K   +  A    + M  RD VSW +I+T Y Q+    +   +F         
Sbjct: 223 NCLLGGFVKKKKIVEARQFFDSMNVRDVVSWNTIITGYAQSGKIDEARQLFDE------- 275

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P   VF       G +   R+ ++    F   P   ++V  ++++  Y +      A+ 
Sbjct: 276 SPVQDVFTWTAMVSGYI-QNRMVEEARELFDKMPE-RNEVSWNAMLAGYVQGERMEMAKE 333

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +FD +  +N  +W  M++ YA+ G+  +A  +F++ P R+   W A+++G  QS +  +A
Sbjct: 334 LFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSFEA 393

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F++M REG  + +    SS +  CA+   LELGKQ+HG ++  GYE+  F+ NA++ 
Sbjct: 394 LRLFVQMEREGGRL-NRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLL 452

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  I  A D+F  M  KD+VSW ++I G ++HG  E  L  ++ M   G+KP++ T
Sbjct: 453 MYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEVALRFFESMKREGLKPDDAT 512

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
            V ++ ACSH GLV KGR+ F +M +DYG+ P+ QHY C++DLL R+G L++A NL+K M
Sbjct: 513 MVAVLSACSHTGLVDKGRQYFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNM 572

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           PFEPD   W  LL A + H NTE+    A+ + +++PE+   Y+LLSN+YAS+  W  V 
Sbjct: 573 PFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGMYVLLSNLYASSGRWGDVG 632

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           K+R  M    VKK PGYS+IE    +H F  G+  HP KDEIF  L ELD  MK+ GYV 
Sbjct: 633 KLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEKDEIFAFLEELDLRMKKAGYVS 692

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
            TS VLHD+E++EKER + +HSERLAVAYG+++   G  +RV+KNLRVC DCH  +K ++
Sbjct: 693 KTSVVLHDVEEEEKERMVRYHSERLAVAYGIMRVSSGRPIRVIKNLRVCEDCHNAIKYMA 752

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           RIT R I++RD  R+HHFKDG CSC D+W
Sbjct: 753 RITGRLIILRDNNRFHHFKDGSCSCGDYW 781



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/396 (22%), Positives = 168/396 (42%), Gaps = 61/396 (15%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +I  Y +    + A  L +EMP+RD VSW  ++  Y +     K   +F  M      
Sbjct: 99  NGMISGYLRNGEFELARKLFDEMPERDLVSWNVMIKGYVRNRNLGKARELFEIM------ 152

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P+                                  D    ++++  YA+ G  ++AR+
Sbjct: 153 -PER---------------------------------DVCSWNTMLSGYAQNGCVDDARS 178

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VFD +  KN VSW A+LSAY ++ + ++A  +F+      L  W  L+ G V+ +  ++A
Sbjct: 179 VFDRMPEKNDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEA 238

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M     ++ D +  ++I+   A    ++  +Q+            +F   A+V 
Sbjct: 239 RQFFDSM-----NVRDVVSWNTIITGYAQSGKIDEARQLFDESPVQD----VFTWTAMVS 289

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
            Y +   +  A+++F +M  ++ VSW +++ G  Q  + E    L+D M    V     T
Sbjct: 290 GYIQNRMVEEARELFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVS----T 345

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           +  +I   +  G + + + LF  M +   ++     +  ++   S+SGH  EA  L   M
Sbjct: 346 WNTMITGYAQCGKISEAKNLFDKMPKRDPVS-----WAAMIAGYSQSGHSFEALRLFVQM 400

Query: 402 PFEP---DEPTWAALLSACKHHRNTEMGTRVANHLL 434
             E    +  ++++ LS C      E+G ++   L+
Sbjct: 401 EREGGRLNRSSFSSALSTCADVVALELGKQLHGRLV 436



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 66/322 (20%), Positives = 120/322 (37%), Gaps = 84/322 (26%)

Query: 174 WTAMLSAYARSGRKKDAMEI-------------------------------FEQAPVRNL 202
           W   +S+Y R+GR  +A+ +                               F++ P R+L
Sbjct: 67  WNVAISSYMRTGRCNEALRVFKRMPRWSSVSYNGMISGYLRNGEFELARKLFDEMPERDL 126

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN-----FAVLELG 257
             W  ++ G V++RN   A   F  M    V   + ++       C +     F  +   
Sbjct: 127 VSWNVMIKGYVRNRNLGKARELFEIMPERDVCSWNTMLSGYAQNGCVDDARSVFDRMPEK 186

Query: 258 KQIHGLVIALGY-------ESCLFIS----------NAIVDMYAKCSDIIAAKDIFGRMR 300
             +    +   Y       E+C+             N ++  + K   I+ A+  F  M 
Sbjct: 187 NDVSWNALLSAYVQNSKMEEACMLFKSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMN 246

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            +DVVSW +II G AQ G+ +E   L+DE     V     T+  ++       +V + R+
Sbjct: 247 VRDVVSWNTIITGYAQSGKIDEARQLFDESPVQDV----FTWTAMVSGYIQNRMVEEARE 302

Query: 361 LFKSMIED------------------------YGITP--SLQHYTCLLDLLSRSGHLDEA 394
           LF  M E                         + + P  ++  +  ++   ++ G + EA
Sbjct: 303 LFDKMPERNEVSWNAMLAGYVQGERMEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEA 362

Query: 395 ENLIKAMPFEPDEPTWAALLSA 416
           +NL   MP + D  +WAA+++ 
Sbjct: 363 KNLFDKMP-KRDPVSWAAMIAG 383



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 116/269 (43%), Gaps = 21/269 (7%)

Query: 4   SHYLHRLRVCARHQIALTV-KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
           S +   L  CA   +AL + K LH +++K G      + N L+  Y KC  ++ A+ L +
Sbjct: 410 SSFSSALSTCA-DVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDLFK 468

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
           EM  +D VSW +++  Y++    +  +  F +M   + L+PD     +++ AC   G   
Sbjct: 469 EMAGKDIVSWNTMIAGYSRHGFGEVALRFFESM-KREGLKPDDATMVAVLSACSHTGLVD 527

Query: 123 LGKQVHACFVLSPFCDDDVVKSS-----LVDMYAKCGLPNNARAVFDSIKLK-NSVSWTA 176
            G+Q    +  +   D  V+ +S     +VD+  + GL  +A  +  ++  + ++  W  
Sbjct: 528 KGRQ----YFYTMTQDYGVMPNSQHYACMVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGT 583

Query: 177 MLSAYARSGR----KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
           +L A    G     +  A +IF   P  N  ++  L +    S    D     + MR +G
Sbjct: 584 LLGASRVHGNTELAETAADKIFAMEP-ENSGMYVLLSNLYASSGRWGDVGKLRVRMRDKG 642

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIH 261
           V  V       I      F+V   G + H
Sbjct: 643 VKKVPGYSWIEIQNKTHTFSV---GDEFH 668


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  474 bits (1219), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/593 (38%), Positives = 356/593 (60%), Gaps = 6/593 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K++H +++ +G      + N LID Y + + +  A  + EEMP RD VSW S+++ YN  
Sbjct: 135 KSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 194

Query: 83  NLPQKTISIFSTMLAL-----DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
               + + I+   + L     ++ +PD     S+++ACG LG    GK VH   + S + 
Sbjct: 195 GYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYE 254

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D    + L++MYAKCG    ++ VF  +K K+SVSW +M++ Y ++G+  D++++FE  
Sbjct: 255 CDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVFENM 314

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
             R++  W  +++  V S +          MR EGV   D   + SI+  C+  A    G
Sbjct: 315 KARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGV-TPDMATMLSILPVCSLLAAKRQG 373

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           K+IHG +  LG ES + + N +++MY+KC  +  +  +F  M+ KDVV+WT++I     +
Sbjct: 374 KEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMY 433

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G+ ++ +  + EM +AG+ P+ V FV +I+ACSH GLV +G   F  M +DY I P ++H
Sbjct: 434 GEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEH 493

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
           Y C++DLLSRS  LD+AE+ I +MP +PD   W ALLSAC+   +TE+  RV+  ++ L 
Sbjct: 494 YACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELN 553

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
           P+D   Y+L+SN+YA+   W  V  +RK +    +KK+PG S++E     ++F  G    
Sbjct: 554 PDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWMEIQNKVYVFGTGTKFF 613

Query: 498 PLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVP 557
              +E+ +LL  L   M + GY+ +   VLHD+++ EK   L  HSERLA+A+GLL + P
Sbjct: 614 EQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILCGHSERLAIAFGLLNTKP 673

Query: 558 GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           GT L+V+KNLRVC DCH V K IS+I +RE++VRDA R+H FKDG CSC D+W
Sbjct: 674 GTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFKDGACSCGDYW 726



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/450 (25%), Positives = 199/450 (44%), Gaps = 61/450 (13%)

Query: 11  RVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-DLVQYAHHLLEEMPQRDH 69
           R  A       +  LH+ II LGLH        LI  Y    D            P  + 
Sbjct: 21  RALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNV 80

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
             W SI+ A     L  + +S++S    + +LQPD + F S++ AC  L    + K +H 
Sbjct: 81  YLWNSIIRALTHNGLFSEALSLYSETQRI-RLQPDTYTFPSVINACAGLLDFEMAKSIHD 139

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +   F  D  + ++L+DMY +    + AR VF+ + L++ VSW +++S Y  +G   +
Sbjct: 140 RVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNE 199

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+EI+ Q+                     I  F   +   +      D L ++SI+ AC 
Sbjct: 200 ALEIYYQS---------------------IKLFMEMVNQFKP-----DLLTITSILQACG 233

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +   LE GK +H  +I  GYE     SN +++MYAKC +++A++++F  M+ KD VSW S
Sbjct: 234 HLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNS 293

Query: 310 IIVGTAQHGQAEETLALYDEMV-------------------------------SAGVKPN 338
           +I    Q+G+  ++L +++ M                                + GV P+
Sbjct: 294 MINVYIQNGKMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPD 353

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
             T + ++  CS +    +G+++   + +  G+   +     L+++ S+ G L  +  + 
Sbjct: 354 MATMLSILPVCSLLAAKRQGKEIHGCIFK-LGLESDVPVGNVLIEMYSKCGSLRNSFQVF 412

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           K M    D  TW AL+SAC  +   +   R
Sbjct: 413 KLMK-TKDVVTWTALISACGMYGEGKKAVR 441



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 91/195 (46%), Gaps = 9/195 (4%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L  L VC+        K +H  I KLGL    P+ N LI+ Y KC  ++ +  + + M  
Sbjct: 358 LSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKT 417

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG-- 124
           +D V+W ++++A       +K +  F  M A   + PDH  F +++ AC   G    G  
Sbjct: 418 KDVVTWTALISACGMYGEGKKAVRAFGEMEAAG-IVPDHVAFVAIIFACSHSGLVEEGLN 476

Query: 125 --KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAY 181
              ++   + + P  +     + +VD+ ++  L + A     S+ LK +S  W A+LSA 
Sbjct: 477 YFHRMKKDYKIEPRIEH---YACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSAC 533

Query: 182 ARSGRKKDAMEIFEQ 196
             SG  + A  + E+
Sbjct: 534 RMSGDTEIAERVSER 548



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 121/294 (41%), Gaps = 53/294 (18%)

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
           + SSI  A A+ A      ++H L+I LG    +  S  ++  YA   D  ++  +F R+
Sbjct: 15  LFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVF-RL 73

Query: 300 R--RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357
                +V  W SII     +G   E L+LY E     ++P+  TF  +I AC+ + L  +
Sbjct: 74  ASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGL-LDFE 132

Query: 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP--------------- 402
             K     + D G    L     L+D+  R   LD+A  + + MP               
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 192

Query: 403 -------------------------FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
                                    F+PD  T  ++L AC H  + E G  V +++++  
Sbjct: 193 ANGYWNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSG 252

Query: 438 PE-DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS-----YIEFGK 485
            E D ++  +L N+YA      ++   +++ S M+ K    ++     YI+ GK
Sbjct: 253 YECDTTASNILINMYAKCG---NLLASQEVFSGMKCKDSVSWNSMINVYIQNGK 303


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 232/588 (39%), Positives = 352/588 (59%), Gaps = 33/588 (5%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            + +H++++K G      + N LI  Y +C  ++ A  L  +M ++D +SW +++    ++
Sbjct: 466  REIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKS 525

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             L  + +++F  M     L+P+   + S++ AC S  A   G+++H   + +    D  V
Sbjct: 526  GLGAEALAVFQDMQQAG-LKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHV 584

Query: 143  KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
             ++LV+MY+ CG   +AR VFD +  ++ V++ AM+  YA     K+A+++F++      
Sbjct: 585  ANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDR------ 638

Query: 203  FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                     ++ EG+   D +   +++ ACAN   LE  K+IH 
Sbjct: 639  -------------------------LQEEGLK-PDKVTYINMLNACANSGSLEWAKEIHS 672

Query: 263  LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            LV+  GY S   + NA+V  YAKC     A  +F +M +++V+SW +II G AQHG+ ++
Sbjct: 673  LVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQD 732

Query: 323  TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
             L L++ M   G+KP+ VTFV L+ ACSH GL+ +GR+ F SM  D+GITP+++HY C++
Sbjct: 733  VLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMV 792

Query: 383  DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
            DLL R+G LDE E LIK MPF+ +   W ALL AC+ H N  +  R A   L L P++ +
Sbjct: 793  DLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAA 852

Query: 443  SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
             Y+ LS++YA+A MW   +K+RKLM    V KEPG S+IE G   H F A + SHP  ++
Sbjct: 853  VYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIEVGDKLHYFVAEDRSHPESEK 912

Query: 503  IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
            I+  L +L   MK  GYVPDT SV+HD+++ EKE  +  HSERLA+AYGL+ ++PGT +R
Sbjct: 913  IYAELDKLTHAMKMEGYVPDTRSVMHDVDEGEKENAVCHHSERLAIAYGLISTLPGTPIR 972

Query: 563  VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            + KNLRVC DCH   K I++I  REIV RD  R+HHFKDG CSC D+W
Sbjct: 973  IFKNLRVCPDCHTATKFITKIVDREIVARDVNRFHHFKDGVCSCGDYW 1020



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 212/447 (47%), Gaps = 38/447 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H + +K  L     + N +++ Y KC  +  A  + ++M  +  VSW  I+  Y   
Sbjct: 264 REIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADC 323

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +    IF  M   + + P+   + +++ A     A + GK VH+  + +    D  V
Sbjct: 324 GHSEIAFEIFQKMQQ-EGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAV 382

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LV MYAKC                               G  KD  ++FE+   R+L
Sbjct: 383 GTALVKMYAKC-------------------------------GSYKDCRQVFEKLVNRDL 411

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W  ++ GL +  N  +A   + +M+REG+ + + +    ++ AC N   L  G++IH 
Sbjct: 412 IAWNTMIGGLAEGGNWEEASEIYHQMQREGM-MPNKITYVILLNACVNPTALHWGREIHS 470

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            V+  G+   + + NA++ MYA+C  I  A+ +F +M RKD++SWT++I G A+ G   E
Sbjct: 471 RVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAE 530

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            LA++ +M  AG+KPN VT+  ++ ACS    +  GR++ + +IE  G+         L+
Sbjct: 531 ALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIE-AGLATDAHVANTLV 589

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPED 440
           ++ S  G + +A  +   M  + D   + A++     H   +   ++ + L    LKP D
Sbjct: 590 NMYSMCGSVKDARQVFDRMT-QRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKP-D 647

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLM 467
             +YI + N  A++   +   ++  L+
Sbjct: 648 KVTYINMLNACANSGSLEWAKEIHSLV 674



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 144/634 (22%), Positives = 265/634 (41%), Gaps = 104/634 (16%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIK--LGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           Y+  L+ C   +  +  + +H  II+    L QY    N LI+ Y +C  ++ A  +  +
Sbjct: 144 YMKMLKRCIEVKDLVAGREVHEHIIQHCTVLDQY--TVNALINMYIQCGSIEEARQVWNK 201

Query: 64  MPQRDHV--SWASILTAYNQANLPQKTISIFSTM----LALDKLQPDHFVFASLVKACGS 117
           +   +    SW +++  Y Q    ++ + +   M    LAL +          L+ +C S
Sbjct: 202 LNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQHGLALGRATT-----MRLLSSCKS 256

Query: 118 LGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAM 177
             A   G+++H   + +    D  V + +++MYAKCG  + AR VFD ++ K+ VSWT +
Sbjct: 257 PSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTII 316

Query: 178 LSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD 237
           +  YA  G  + A EIF++                               M++EGV + +
Sbjct: 317 IGGYADCGHSEIAFEIFQK-------------------------------MQQEGV-VPN 344

Query: 238 PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297
            +   +++ A +  A L+ GK +H  ++  G+ES L +  A+V MYAKC      + +F 
Sbjct: 345 RITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFE 404

Query: 298 RMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357
           ++  +D+++W ++I G A+ G  EE   +Y +M   G+ PN++T+V L+ AC +   +  
Sbjct: 405 KLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHW 464

Query: 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---------------- 401
           GR++   +++D G    +     L+ + +R G + +A  L   M                
Sbjct: 465 GREIHSRVVKD-GFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLA 523

Query: 402 ------------------PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK-PEDPS 442
                               +P+  T+ ++L+AC      + G R+   ++      D  
Sbjct: 524 KSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAH 583

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
               L N+Y   +M   V   R++   M  +    Y+ +           G  +H L  E
Sbjct: 584 VANTLVNMY---SMCGSVKDARQVFDRMTQRDIVAYNAM---------IGGYAAHNLGKE 631

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE--RLAVAYGLLKSVP-GT 559
             +L   L  E    G  PD  + ++ +        L W  E   L +  G L     G 
Sbjct: 632 ALKLFDRLQEE----GLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGN 687

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDA 593
            L  V     CG     + +  ++ KR ++  +A
Sbjct: 688 AL--VSTYAKCGSFSDALLVFDKMMKRNVISWNA 719


>gi|449520177|ref|XP_004167110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/574 (39%), Positives = 346/574 (60%), Gaps = 10/574 (1%)

Query: 43  TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQ 102
           T+I  Y + D +  A  + E M +    +W ++++ Y      Q+ +++   M  L  +Q
Sbjct: 228 TMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLG-IQ 286

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFV---LSP---FCDDDVVKSSLVDMYAKCGLP 156
            D   + +++ AC ++G+ ++GKQVHA  +   L+P   FC    V ++L+ +Y K    
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQVHAYILKNELNPNHSFCLS--VSNALITLYCKNNKV 344

Query: 157 NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
           + AR +F ++ ++N ++W A+LS Y  +GR ++A   FE+ PV+NL   T ++SGL Q+ 
Sbjct: 345 DEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNG 404

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
              +    F +MR +G +  D    +  + AC+    LE G+Q+H  ++ LGYES L + 
Sbjct: 405 FGDEGLKLFKQMRLDGFEPCD-FAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVG 463

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
           NA++ MYAKC  + AA+ +F  M   D+VSW S+I    QHG   + + L+D+M+  GV 
Sbjct: 464 NAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVF 523

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
           P+ +TF+ ++ ACSH GLV KGR  F SM+E YGITP   HY  ++DL  R+G    A  
Sbjct: 524 PDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARI 583

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           +I +MP +P  P W ALL+ C+ H N ++G   A  L  L P++  +Y+LLSN+YA    
Sbjct: 584 VIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGR 643

Query: 457 WQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKR 516
           W  V+KVRKLM    V+KEP  S+IE     H+F   +  HP    ++  L +L  EMK+
Sbjct: 644 WNEVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKK 703

Query: 517 RGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIV 576
            GY+PDT  VLHDME ++KE  L  HSE+LAV +G++K  PG  +RV KN+R+CGDCH  
Sbjct: 704 LGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPGATVRVFKNIRICGDCHNA 763

Query: 577 MKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            K +S++ +REI+VRD  R+HHFK+G CSC D+W
Sbjct: 764 FKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 124/497 (24%), Positives = 221/497 (44%), Gaps = 84/497 (16%)

Query: 4   SHYLHRLRVCARHQIAL--TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
           + Y  +L++C+    A     + +HA +I  G    G   N L++ Y K   + YA  L 
Sbjct: 12  NRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNLVYARQLF 71

Query: 62  EEMPQRDHVSWASILTAY-------------NQANLPQKTISIFSTMLA----------- 97
           EE+P  D ++  +++TAY             N   L  +    ++ M+            
Sbjct: 72  EEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSA 131

Query: 98  --------LDKLQPDHFVFASLVKACG-SLGATRLGKQVHACFVLSPF-CDDDVVKSSLV 147
                    D  +PD F F S++ A    +G  +   Q+H   V +   C    V ++L+
Sbjct: 132 LELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALL 191

Query: 148 DMYAK--------CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
            +Y K        C    +AR +FD +  ++ ++WT M++ Y R+     A E+FE A V
Sbjct: 192 SVYVKRASELGISCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFE-AMV 250

Query: 200 RNL-FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            NL   W A++SG V      +A     +MR  G+   D +  ++I+ ACAN    ++GK
Sbjct: 251 ENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQF-DDITYTTIISACANVGSFQMGK 309

Query: 259 QIHGLVIA----LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI---- 310
           Q+H  ++       +  CL +SNA++ +Y K + +  A+ IF  M  +++++W +I    
Sbjct: 310 QVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGY 369

Query: 311 ---------------------------IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
                                      I G AQ+G  +E L L+ +M   G +P +  F 
Sbjct: 370 VNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFA 429

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
           G + ACS +G +  GR+L   ++   G   SL     ++ + ++ G ++ AE++   MP 
Sbjct: 430 GALTACSVLGALENGRQLHAQLVH-LGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP- 487

Query: 404 EPDEPTWAALLSACKHH 420
             D  +W ++++A   H
Sbjct: 488 SVDLVSWNSMIAALGQH 504



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 160/380 (42%), Gaps = 72/380 (18%)

Query: 23  KTLHAQIIKLGL---HQYG-PLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           K +HA I+K  L   H +   + N LI  Y K + V  A  +   MP R+ ++W +IL+ 
Sbjct: 309 KQVHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSG 368

Query: 79  YNQANLPQKTISIFSTM------------------------------LALDKLQPDHFVF 108
           Y  A   ++  S F  M                              + LD  +P  F F
Sbjct: 369 YVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAF 428

Query: 109 ASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL 168
           A  + AC  LGA   G+Q+HA  V   +     V ++++ MYAKCG+   A +VF ++  
Sbjct: 429 AGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPS 488

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228
            + VSW +M++A  + G    A+E+F+Q                               M
Sbjct: 489 VDLVSWNSMIAALGQHGHGVKAIELFDQ-------------------------------M 517

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQ-IHGLVIALGYESCLFISNAIVDMYAKCS 287
            +EGV   D +   +++ AC++  ++E G+   + ++ + G   C      +VD++ +  
Sbjct: 518 LKEGV-FPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAG 576

Query: 288 DIIAAKDIFGRMRRKDVVS-WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
               A+ +   M  K     W +++ G   HG  +  +   +++    +  N+ T+V L 
Sbjct: 577 MFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKL-MPQNDGTYVLLS 635

Query: 347 YACSHVGL---VGKGRKLFK 363
              + VG    V K RKL +
Sbjct: 636 NIYADVGRWNEVAKVRKLMR 655


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 250/634 (39%), Positives = 359/634 (56%), Gaps = 41/634 (6%)

Query: 16  HQIALTVKT-LHAQIIKLGLHQYGPLPNTLIDAYGKCD---LVQYAHHLLEEMPQRDHVS 71
           H +A++  T LH  + KLG      + N LI  Y KCD   + + A  +L+EMP++D ++
Sbjct: 173 HDLAVSHCTQLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELT 232

Query: 72  WASI-------------------------------LTAYNQANLPQKTISIFSTMLALDK 100
           W +I                               ++ Y Q+ +  +   +F  M++  +
Sbjct: 233 WTTIVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVS-KR 291

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFV-LSP-FCDDDV--VKSSLVDMYAKCGLP 156
           + PD F F SL+ AC + G    GK VH  F+ L P F  +    V ++LV +Y+K G  
Sbjct: 292 IPPDEFTFTSLLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKI 351

Query: 157 NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
             A  +FDS+ LK+ VSW  +LS Y  SG   +A  IF++ P ++   W  +VSG V   
Sbjct: 352 AVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGYVHGG 411

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
              DA   F +MR E V   D    +  V AC     L+ GKQ+H  ++  G+E+     
Sbjct: 412 LAEDALKLFNQMRSEDVKPCD-YTYAGAVAACGELGALKHGKQLHAHLVQCGFEASNSAG 470

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
           NA++ MYA+C  +  A+ +F  M   D VSW ++I    QHG   E L L+D+MV+ G+ 
Sbjct: 471 NALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQGIY 530

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
           P+ ++F+ ++ AC+H GLV  G + F+SM  D+GI+P   HY  L+DLL R+G + EA +
Sbjct: 531 PDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGEARD 590

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           LIK MPFEP    W A+LS C+ + + E+G   A+ L  + PE   +YILLSN Y++A  
Sbjct: 591 LIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKMVPEHDGTYILLSNTYSAAGR 650

Query: 457 WQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKR 516
           W   ++VRKLM    VKKEPG S+IE G   H+F  G+T HP   E++  L  + A+M++
Sbjct: 651 WVDAARVRKLMRDRGVKKEPGCSWIEVGNKVHVFLVGDTKHPDAHEVYRFLEMVGAKMRK 710

Query: 517 RGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIV 576
            GYVPDT   L DM   EKE  LF HSERLAV++GLLK   G  + V+KNL++CGDCH  
Sbjct: 711 LGYVPDTKFALQDMAPHEKEYVLFAHSERLAVSFGLLKLPAGATVTVLKNLKICGDCHTA 770

Query: 577 MKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           M  +SR   REIVVRD  R+HHFKDG+CSC ++W
Sbjct: 771 MMFMSRAVGREIVVRDVRRFHHFKDGECSCGNYW 804



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/434 (29%), Positives = 206/434 (47%), Gaps = 61/434 (14%)

Query: 38  GPLPNT-LIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTAYNQANLPQKTISIFST 94
           GP+  T L+ AY     ++ +    + +P  +RD V   ++++A+ +A+L    +S+F +
Sbjct: 88  GPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVLHNAMISAFARASLAAPAVSVFRS 147

Query: 95  MLALD-KLQPDHFVFASLVKACGSLG------ATRLGKQVH---ACFVLSPFCDDDVVKS 144
           +LA D  L+PD + F SL+ A G +        T+L   VH   A  VLS       V +
Sbjct: 148 LLASDDSLRPDDYSFTSLLSAVGQMHDLAVSHCTQLHCAVHKLGAGAVLS-------VSN 200

Query: 145 SLVDMYAKC---GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           +L+ +Y KC   G+  +AR V D +  K+ ++WT ++  + R G    A   FE+     
Sbjct: 201 ALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHVRKGDVHAARSAFEEIDGEF 260

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
             +W A++SG VQS    +AF  F  M  + +   D    +S++ ACAN      GK +H
Sbjct: 261 DVVWNAMISGYVQSGMCAEAFELFRRMVSKRIP-PDEFTFTSLLSACANAGFFLHGKSVH 319

Query: 262 GLVIALG----YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           G  I L      E+ L ++NA+V +Y+K   I  A  IF  M  KDVVSW +I+ G  + 
Sbjct: 320 GQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSMTLKDVVSWNTILSGYIES 379

Query: 318 -------------------------------GQAEETLALYDEMVSAGVKPNEVTFVGLI 346
                                          G AE+ L L+++M S  VKP + T+ G +
Sbjct: 380 GCLDNAARIFKEMPYKSELSWMVMVSGYVHGGLAEDALKLFNQMRSEDVKPCDYTYAGAV 439

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            AC  +G +  G++L   +++  G   S      LL + +R G + +A  +   MP   D
Sbjct: 440 AACGELGALKHGKQLHAHLVQ-CGFEASNSAGNALLTMYARCGAVKDARLVFLVMP-NVD 497

Query: 407 EPTWAALLSACKHH 420
             +W A++SA   H
Sbjct: 498 SVSWNAMISALGQH 511


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  472 bits (1215), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 242/569 (42%), Positives = 343/569 (60%), Gaps = 33/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT+I    +C  +  A  L + MP++D +SW +I+T   Q  L ++ +  F  M  ++  
Sbjct: 208 NTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEM-GIEGF 266

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             D F F S++ ACG   A   GKQ+HA  + + + D+  V S+L+DMY KC     A A
Sbjct: 267 CMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEA 326

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF  ++ K                               N+  WTA++ G  Q+    +A
Sbjct: 327 VFRKMRHK-------------------------------NVISWTAMLVGYGQNGYSEEA 355

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F +M+R  +   D   L S++ +CAN A LE G Q HG  +A G    + +SNA++ 
Sbjct: 356 VRIFCDMQRNEIH-PDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTVSNALIT 414

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           +Y KC  +  A  +F  M+ +D VSWT+++ G AQ G+A ET++L++ M++ G+ P+ VT
Sbjct: 415 LYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFETMLAHGIVPDGVT 474

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           FVG++ ACS  GLV KG   F+ M++++ ITP   HYTC++DLLSR+G L+EA+N I  M
Sbjct: 475 FVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDHYTCMIDLLSRAGRLEEAKNFINQM 534

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           PF PD   WA LLS+C+ + N E+G   A  L  L+P++P+SYILLS++YA+   W  V+
Sbjct: 535 PFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLEPQNPASYILLSSIYAAKGKWDDVA 594

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           K+RK M  M VKKEPG+S+I++    HIF A + S P  D+I+  L  L  +M   GYVP
Sbjct: 595 KLRKGMREMGVKKEPGHSWIKYKNKVHIFSADDRSSPFSDQIYAKLESLYLKMIEEGYVP 654

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           D S VLHD+E+ EK + L  HSE+LA+A+GLL    G  +RVVKNLRVCGDCH   K IS
Sbjct: 655 DMSFVLHDVEKSEKIKMLNHHSEKLAIAFGLLFIPDGLQIRVVKNLRVCGDCHNATKYIS 714

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           RIT+REI+VRDA R+H FKDG CSC DFW
Sbjct: 715 RITQREILVRDAVRFHLFKDGVCSCGDFW 743



 Score =  210 bits (534), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 126/444 (28%), Positives = 219/444 (49%), Gaps = 34/444 (7%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLG-----------LHQYG-------------- 38
           ++Y   L+ C   +    VK LH +II+             ++ YG              
Sbjct: 6   NYYTAALKFCCEARNRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDH 65

Query: 39  -PLPN-----TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIF 92
            P PN     TL+ AY K   +Q    + + MP  D VSW S+L+ Y    L  +++ ++
Sbjct: 66  IPQPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVY 125

Query: 93  STMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK 152
           + ML    +  +   F++++    + G   LG+Q+H       +     V S LVDMYAK
Sbjct: 126 NMMLKDGSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAK 185

Query: 153 CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGL 212
            G  N+A  +F+ I  KN V +  M++   R     +A ++F+  P ++   WT +++GL
Sbjct: 186 TGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGL 245

Query: 213 VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC 272
            Q+    +A   F EM  EG   +D     S++ AC  F  L+ GKQIH  +I   Y+  
Sbjct: 246 TQNGLFKEAVDKFKEMGIEGF-CMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDN 304

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           +F+ +A++DMY KC ++  A+ +F +MR K+V+SWT+++VG  Q+G +EE + ++ +M  
Sbjct: 305 IFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQR 364

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
             + P++ T   +I +C+++  + +G +     +   G+   +     L+ L  + G L+
Sbjct: 365 NEIHPDDFTLGSVISSCANLASLEEGAQFHGQALAS-GLICFVTVSNALITLYGKCGSLE 423

Query: 393 EAENLIKAMPFEPDEPTWAALLSA 416
            A  L   M    DE +W AL+S 
Sbjct: 424 HAHQLFHEMKIR-DEVSWTALVSG 446



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 71/307 (23%), Positives = 136/307 (44%), Gaps = 47/307 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HA II+        + + L+D Y KC  V+YA  +  +M  ++ +SW ++L  Y Q 
Sbjct: 290 KQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQN 349

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ + IF  M   +++ PD F   S++ +C +L +   G Q H   + S       V
Sbjct: 350 GYSEEAVRIFCDM-QRNEIHPDDFTLGSVISSCANLASLEEGAQFHGQALASGLICFVTV 408

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+ +Y KCG   +A  +F  +K+++ VSWTA++S YA+ G+  + + +FE       
Sbjct: 409 SNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQFGKANETISLFE------- 461

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI-- 260
              T L  G+V                       D +    ++ AC+   ++E G     
Sbjct: 462 ---TMLAHGIVP----------------------DGVTFVGVLSACSRAGLVEKGYHYFE 496

Query: 261 -----HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGT 314
                H +     + +C+      +D+ ++   +  AK+   +M    D + W +++   
Sbjct: 497 CMVKEHRITPIPDHYTCM------IDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSC 550

Query: 315 AQHGQAE 321
             +G  E
Sbjct: 551 RLNGNLE 557


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/555 (40%), Positives = 343/555 (61%), Gaps = 2/555 (0%)

Query: 56  YAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115
           YA  + + +   +   W + L ++ + + P   IS+F  +   D + PDH+  + ++KAC
Sbjct: 65  YAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFD-ISPDHYTCSFVLKAC 123

Query: 116 GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWT 175
             L   R GK VH          +  +++ +V +YA CG    AR VFD +  ++ ++W 
Sbjct: 124 SRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWN 183

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
            M++   + G  + A ++F + P RN+  WT+++ G  Q     +A   F+EM   G+ +
Sbjct: 184 IMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGL-L 242

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
            + + + +++ ACA+   L LG++IH      GYE  + + N ++DMY KC  +  A  I
Sbjct: 243 PNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRI 302

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
           F  M  + VVSW+++I G A HG+AE+ LAL+++M++ GVKPN VTF+G+++ACSH+G+V
Sbjct: 303 FDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMV 362

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
            KGRK F SM  DYGI P ++HY C++DL SR+G L EA   I  MP  P+   W ALL 
Sbjct: 363 EKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLG 422

Query: 416 ACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKE 475
            CK H+N ++      HL  L P +   Y++LSN+YA A  W+ V++VRKLM    VKK 
Sbjct: 423 GCKVHKNIKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKT 482

Query: 476 PGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEK 535
           PG+S I      + F AG+ +HP  +EIF+   +L   MK +GYVP+TS VL DME+ +K
Sbjct: 483 PGWSSIMVEGVVYNFVAGDDTHPQTEEIFQTWEKLLQRMKLKGYVPNTSVVLLDMEEDQK 542

Query: 536 ERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATR 595
           E+ L+ HSE+LAV +GL+K+ PGTV+R++KNLRVC DCH  +K+IS ++ REIVVRD  R
Sbjct: 543 EKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRNR 602

Query: 596 YHHFKDGKCSCNDFW 610
           +H FK+G CSC D+W
Sbjct: 603 FHCFKNGSCSCGDYW 617



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 107/217 (49%), Gaps = 30/217 (13%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+R       K +H  + KLGL     L N ++  Y  C  +  A  + ++MPQRD 
Sbjct: 120 LKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDV 179

Query: 70  VSWASILT----------AYNQ-ANLPQKTISIFSTML-----------ALD-------- 99
           ++W  ++           AY   A +P++ +  +++M+           A+D        
Sbjct: 180 ITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDA 239

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            L P+     +++ AC  +G   LG+++H     S +  +  V ++L+DMY KCG   +A
Sbjct: 240 GLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDA 299

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             +FD+++ +  VSW+AM++  A  GR +DA+ +F +
Sbjct: 300 CRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNK 336


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  471 bits (1212), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 241/605 (39%), Positives = 354/605 (58%), Gaps = 34/605 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L+ CA        K +H Q+IK G++    L N+L++ Y KC    YA  +  E+P
Sbjct: 194 FISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIP 253

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +RD VSW +++T +  A      + IF+ MLA +   P+ + F S++++C SL    LGK
Sbjct: 254 ERDVVSWTALITGF-VAEGYGSGLRIFNQMLA-EGFNPNMYTFISILRSCSSLSDVDLGK 311

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           QVHA  V +    +D V ++LVDMYA                 KN               
Sbjct: 312 QVHAQIVKNSLDGNDFVGTALVDMYA-----------------KNRF------------- 341

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             +DA  IF +   R+LF WT +V+G  Q      A   FI+M+REGV   +   L+S +
Sbjct: 342 -LEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVK-PNEFTLASSL 399

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
             C+  A L+ G+Q+H + I  G    +F+++A+VDMYAKC  +  A+ +F  +  +D V
Sbjct: 400 SGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTV 459

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SW +II G +QHGQ  + L  ++ M+  G  P+EVTF+G++ ACSH+GL+ +G+K F S+
Sbjct: 460 SWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSL 519

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
            + YGITP+++HY C++D+L R+G   E E+ I+ M    +   W  +L ACK H N E 
Sbjct: 520 SKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEF 579

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G R A  L  L+PE  S+YILLSN++A+  MW  V+ VR LMS   VKKEPG S++E   
Sbjct: 580 GERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNG 639

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H+F + + SHP   EI   L +L  ++   GY P+T  VLH++  +EK+  LF+HSER
Sbjct: 640 QVHVFLSHDGSHPKIREIHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSER 699

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+A+ LL +     +R+ KNLR+CGDCH  MK IS IT +E+VVRD   +HHFK+G CS
Sbjct: 700 LALAFALLSTSTRKTIRIFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCS 759

Query: 606 CNDFW 610
           C +FW
Sbjct: 760 CQNFW 764



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 207/431 (48%), Gaps = 41/431 (9%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           +K +  ++IK G+     L ++L++ Y KC+ +Q A  +LEEMP +D   W   L++ N 
Sbjct: 8   LKKIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANS 67

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
               Q+ + +F  M    +++ + F+FASL+ A  SLG    G+ +HAC     F  D +
Sbjct: 68  PYPLQEAVQLFYLMRH-TRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDIL 126

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           + ++ V MY K     N    F ++ ++N  S   +LS +  +       E  +Q P   
Sbjct: 127 ISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDT-------ETCDQGP--- 176

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
             L   LV G   +       Y+FI                SI+  CA+   L  GK IH
Sbjct: 177 RILIQLLVEGFEPN------MYTFI----------------SILKTCASKGDLNEGKAIH 214

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           G VI  G      + N++V++YAKC     A  +FG +  +DVVSWT++I G    G   
Sbjct: 215 GQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYG- 273

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
             L ++++M++ G  PN  TF+ ++ +CS +  V  G+++   ++++  +  +    T L
Sbjct: 274 SGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKN-SLDGNDFVGTAL 332

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE-- 439
           +D+ +++  L++AE +   +  + D   W  +++    +     G +     + ++ E  
Sbjct: 333 VDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIVAG---YAQDGQGEKAVKCFIQMQREGV 388

Query: 440 DPSSYILLSNV 450
            P+ + L S++
Sbjct: 389 KPNEFTLASSL 399


>gi|414887370|tpg|DAA63384.1| TPA: hypothetical protein ZEAMMB73_689576 [Zea mays]
          Length = 802

 Score =  471 bits (1211), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/624 (38%), Positives = 352/624 (56%), Gaps = 40/624 (6%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCD---LVQYAHHLLEEMPQRDHVSWASI------ 75
           LH  ++K G      + N L+  Y KC+     + A  +L+EMP +D ++W ++      
Sbjct: 181 LHCSVLKSGAGGALSVCNALVALYMKCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVR 240

Query: 76  -------------------------LTAYNQANLPQKTISIFSTMLALDKLQPDHFVFAS 110
                                    ++ Y  + +  +   +F  M+ L+++  D F F S
Sbjct: 241 RGDVGAARSVFEEVDGKFDVVWNAMISGYVHSGMAVEAFELFRRMV-LERVPLDEFTFTS 299

Query: 111 LVKACGSLGATRLGKQVHACFV-LSP-FCDDDV--VKSSLVDMYAKCGLPNNARAVFDSI 166
           ++ AC ++G    GK VH   + L P F  +    V ++LV  Y+KCG    AR +FD++
Sbjct: 300 VLSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNM 359

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
            LK+ VSW  +LS Y  S     A+E+FE+ P +N   W  +VSG V      DA   F 
Sbjct: 360 TLKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFN 419

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           +MR E V   D    +  + AC     L+ GKQ+HG ++ LG+E      NA++ MYA+C
Sbjct: 420 KMRSENVKPCD-YTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARC 478

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             +  A  +F  M   D VSW ++I    QHG   E L L+D MV+ G+ P+ ++F+ ++
Sbjct: 479 GAVKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVL 538

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            AC+H GLV +G + F+SM  D+GI P   HYT L+DLL R+G + EA +LIK MPFEP 
Sbjct: 539 TACNHSGLVDEGFRYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPT 598

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKL 466
              W A+LS C+   + E+G   A+ L  + P+   +YILLSN Y++A  W   ++VRKL
Sbjct: 599 PSIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGCWVDAARVRKL 658

Query: 467 MSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSV 526
           M    VKKEPG S+IE G   H+F  G+T HP   E+++ L  + A+M++ GYVPDT  V
Sbjct: 659 MRDRGVKKEPGCSWIEAGNKVHVFLVGDTKHPEAHEVYKFLEMVGAKMRKLGYVPDTKVV 718

Query: 527 LHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKR 586
           LHDME  +KE  LF HSERLAV +GLL   PG  + V+KNLR+C DCH  +  +S+   R
Sbjct: 719 LHDMEPHQKEHILFAHSERLAVGFGLLNLPPGATVTVLKNLRICDDCHAAIMFMSKAVGR 778

Query: 587 EIVVRDATRYHHFKDGKCSCNDFW 610
           EIVVRD  R+HHFKDG+CSC ++W
Sbjct: 779 EIVVRDVRRFHHFKDGECSCGNYW 802



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 128/427 (29%), Positives = 207/427 (48%), Gaps = 48/427 (11%)

Query: 39  PLP---NTLIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTAYNQANLPQKTISIFS 93
           P P    +L+ AY   D +  A    + +P  +RD V   ++++AY +A+     +++F 
Sbjct: 86  PCPVSATSLVAAYAAADRLPAAVSFFDAVPPARRDTVLHNAVISAYARASHAAPAVAVFR 145

Query: 94  TMLALDKLQPDHFVFASLVKACGSLG--ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYA 151
           ++LA   L+PD + F +L+ A G L   + R   Q+H   + S       V ++LV +Y 
Sbjct: 146 SLLASGSLRPDDYSFTALLSAGGHLPNISVRHCAQLHCSVLKSGAGGALSVCNALVALYM 205

Query: 152 KCGLPN---NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           KC  P    +AR V D +  K+ ++WT M+  Y R G    A  +FE+   +   +W A+
Sbjct: 206 KCESPEATRDARKVLDEMPNKDDLTWTTMVVGYVRRGDVGAARSVFEEVDGKFDVVWNAM 265

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
           +SG V S   ++AF  F  M  E V + D    +S++ ACAN  +   GK +HG +I L 
Sbjct: 266 ISGYVHSGMAVEAFELFRRMVLERVPL-DEFTFTSVLSACANVGLFAHGKSVHGQIIRLQ 324

Query: 269 ----YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH------- 317
                E+ L ++NA+V  Y+KC +I  A+ IF  M  KDVVSW +I+ G  +        
Sbjct: 325 PNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMTLKDVVSWNTILSGYVESSCLDKAV 384

Query: 318 ------------------------GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
                                   G AE+ L L+++M S  VKP + T+ G I AC  +G
Sbjct: 385 EVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNKMRSENVKPCDYTYAGAIAACGELG 444

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
            +  G++L   +++  G   S      L+ + +R G + EA  +   MP   D  +W A+
Sbjct: 445 ALKHGKQLHGHIVQ-LGFEGSNSAGNALITMYARCGAVKEAHLMFLVMP-NIDSVSWNAM 502

Query: 414 LSACKHH 420
           +SA   H
Sbjct: 503 ISALGQH 509



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 121/266 (45%), Gaps = 50/266 (18%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYG----PLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           L  CA   +    K++H QII+L  +       P+ N L+  Y KC  +  A  + + M 
Sbjct: 301 LSACANVGLFAHGKSVHGQIIRLQPNFVPEAALPVNNALVTFYSKCGNIAVARRIFDNMT 360

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTM------------------------------ 95
            +D VSW +IL+ Y +++   K + +F  M                              
Sbjct: 361 LKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFAEDALKLFNK 420

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
           +  + ++P  + +A  + ACG LGA + GKQ+H   V   F   +   ++L+ MYA+CG 
Sbjct: 421 MRSENVKPCDYTYAGAIAACGELGALKHGKQLHGHIVQLGFEGSNSAGNALITMYARCGA 480

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA------PVRNLFLWTALV 209
              A  +F  +   +SVSW AM+SA  + G  ++A+E+F++       P R  FL T L 
Sbjct: 481 VKEAHLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFL-TVLT 539

Query: 210 ----SGLVQSRNEIDAFYSFIEMRRE 231
               SGLV      + F  F  M+R+
Sbjct: 540 ACNHSGLVD-----EGFRYFESMKRD 560



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 86/185 (46%), Gaps = 13/185 (7%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LH  I++LG        N LI  Y +C  V+ AH +   MP  D VSW ++++A  Q 
Sbjct: 450 KQLHGHIVQLGFEGSNSAGNALITMYARCGAVKEAHLMFLVMPNIDSVSWNAMISALGQH 509

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG----ATRLGKQVHACFVLSPFCD 138
              ++ + +F  M+A + + PD   F +++ AC   G      R  + +   F + P  D
Sbjct: 510 GHGREALELFDRMVA-EGIYPDRISFLTVLTACNHSGLVDEGFRYFESMKRDFGIIPGED 568

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGRKK----DAMEI 193
                + L+D+  + G    AR +  ++  + + S W A+LS    SG  +     A ++
Sbjct: 569 H---YTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQL 625

Query: 194 FEQAP 198
           F+  P
Sbjct: 626 FKMTP 630


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/619 (38%), Positives = 354/619 (57%), Gaps = 64/619 (10%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE------------------- 63
           + +H QI+K G   Y  + ++L+D Y K  LV  A  + +E                   
Sbjct: 158 RQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLRS 217

Query: 64  ------------MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
                       M +RD +SW +++T   Q  L  + + +F  M   + +  D + F S+
Sbjct: 218 GMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQ-EGMAMDQYTFGSV 276

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           + ACG L A + GK++H   + S +  +  V S+LVDMY KC     A AVF  +  KN 
Sbjct: 277 LTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRMANKNV 336

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           VS                               WTA++ G  Q+    +A   F +M+R 
Sbjct: 337 VS-------------------------------WTAMLVGYGQNGFSEEAVRVFCDMQRN 365

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
           G++  D   L S++ +CAN A LE G Q H   +  G  S + +SNA++ +Y KC  I  
Sbjct: 366 GIE-PDDFTLGSVISSCANLASLEEGAQFHCQALVSGLISFITVSNALITLYGKCGSIED 424

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           +  +F  M  +D VSWT+++ G AQ G+A ET+ L++ M+  G+KP+ VTF+ ++ ACS 
Sbjct: 425 SNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSR 484

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
            GLV +G++ F+SM++D+GI P   HYTC++DL  R+G L+EA+N I  MPF PD   WA
Sbjct: 485 AGLVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWA 544

Query: 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
            LLS+C+ + N E+G   A  LL L P++P+ YILLS++YA+   W +V+++R+ M    
Sbjct: 545 TLLSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKG 604

Query: 472 VKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDME 531
            +KEPG+S+I++    +IF A + S P  D+I+  L +L+ +M   GYVPD SSVLHD+E
Sbjct: 605 ARKEPGFSWIKYKSKVYIFSADDQSSPFSDQIYAELEKLNHKMIEEGYVPDASSVLHDVE 664

Query: 532 QKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVR 591
             EK + L  HSE+LA+A+GLL    G  +RVVKNLRVCGDCH   K IS+I++REI+VR
Sbjct: 665 DSEKMKMLNHHSEKLAIAFGLLFIPHGLPIRVVKNLRVCGDCHNATKYISKISQREILVR 724

Query: 592 DATRYHHFKDGKCSCNDFW 610
           DA R+H FKDG CSC DFW
Sbjct: 725 DAVRFHLFKDGTCSCGDFW 743



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/437 (30%), Positives = 227/437 (51%), Gaps = 34/437 (7%)

Query: 11  RVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHV 70
           ++C   +     K LH  IIK   +    L N LI+AY K   + YA H+ ++MPQ +  
Sbjct: 13  KLCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSF 72

Query: 71  SWASILTAYNQAN-----------LPQK--------------------TISIFSTMLALD 99
           SW ++L+AY+++            +P +                     +  +++M+   
Sbjct: 73  SWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDG 132

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            L  +   F++++    S G   LG+Q+H   V   F     V SSLVDMYAK GL + A
Sbjct: 133 VLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVA 192

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
             VFD ++ +N V +  M++   RSG  KD+  +F     R+   WT +++GL+Q+  E 
Sbjct: 193 SQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEA 252

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           +A   F +MR+EG+  +D     S++ AC     L+ GK+IH L+I  GY   +F+ +A+
Sbjct: 253 EAMDLFRDMRQEGM-AMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSAL 311

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           VDMY KC  +  A+ +F RM  K+VVSWT+++VG  Q+G +EE + ++ +M   G++P++
Sbjct: 312 VDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDD 371

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
            T   +I +C+++  + +G + F       G+   +     L+ L  + G ++++  L  
Sbjct: 372 FTLGSVISSCANLASLEEGAQ-FHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFD 430

Query: 400 AMPFEPDEPTWAALLSA 416
            M F  DE +W AL+S 
Sbjct: 431 EMSFR-DEVSWTALVSG 446



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 165/336 (49%), Gaps = 33/336 (9%)

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           K++H   + S    +  + ++L++ Y+K G    AR VFD +   NS SW  MLSAY++S
Sbjct: 25  KKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKS 84

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G      EIF   P R+   W +L+SG V   + ++A  ++  M ++GV  ++ +  S++
Sbjct: 85  GDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITFSTM 144

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR------ 298
           +   ++   ++LG+QIHG ++  G+ + +F+ +++VDMYAK   +  A  +F        
Sbjct: 145 LLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNV 204

Query: 299 -------------------------MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
                                    M+ +D +SWT++I G  Q+G   E + L+ +M   
Sbjct: 205 VMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQE 264

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
           G+  ++ TF  ++ AC  +  + +G+++   +I   G   ++   + L+D+  +   +  
Sbjct: 265 GMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRS-GYNHNVFVGSALVDMYCKCRSVRY 323

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           AE + K M    +  +W A+L     +  +E   RV
Sbjct: 324 AEAVFKRMA-NKNVVSWTAMLVGYGQNGFSEEAVRV 358


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/609 (39%), Positives = 366/609 (60%), Gaps = 37/609 (6%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL---VQYAHHLLE 62
           Y   L  C    +    K LH+++I+LGL     +  +L+D Y KC     V  +  + E
Sbjct: 54  YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 113

Query: 63  EMPQRDHVSWASILTAYNQAN-LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
           +MP+ + +SW +I+TAY Q+    ++ I +F  M++   ++P+HF F+S++KACG+L   
Sbjct: 114 QMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMIS-GHIRPNHFSFSSVLKACGNLSDP 172

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
             G+QV++  V       + V +SL+ MYA                              
Sbjct: 173 YTGEQVYSYAVKLGIASVNCVGNSLISMYA------------------------------ 202

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
            RSGR +DA + F+    +NL  + A+V G  ++    +AF  F E+   G+ I      
Sbjct: 203 -RSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGI-SAFTF 260

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           +S++   A+   +  G+QIHG ++  GY+S   I NA++ MY++C +I AA  +F  M  
Sbjct: 261 ASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED 320

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           ++V+SWTS+I G A+HG A   L ++ +M+  G KPNE+T+V ++ ACSHVG++ +G+K 
Sbjct: 321 RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKH 380

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F SM +++GI P ++HY C++DLL RSG L EA   I +MP   D   W  LL AC+ H 
Sbjct: 381 FNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHG 440

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           NTE+G   A  +L  +P+DP++YILLSN++ASA  W+ V K+RK M    + KE G S+I
Sbjct: 441 NTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWI 500

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E     H F+ GETSHP   +I++ L +L +++K  GY+PDT  VLHD+E+++KE+ LF 
Sbjct: 501 EVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQ 560

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSE++AVA+GL+ +     +R+ KNLRVCGDCH  +K IS  T REIVVRD+ R+HH K+
Sbjct: 561 HSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKN 620

Query: 602 GKCSCNDFW 610
           G CSCND+W
Sbjct: 621 GVCSCNDYW 629



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 177/368 (48%), Gaps = 39/368 (10%)

Query: 57  AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116
           A+ + ++MP+R+ V+W  ++T + Q    +  I +F  M  L    PD F ++S++ AC 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDM-ELSGYVPDRFTYSSVLSACT 62

Query: 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTA 176
            LG   LGKQ+H+  +      D  V  SLVDMYAKC                       
Sbjct: 63  ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKC----------------------- 99

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS----RNEIDAFYSFIEMRREG 232
                A  G   D+ ++FEQ P  N+  WTA+++   QS    +  I+ F   I     G
Sbjct: 100 -----AADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMIS----G 150

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
               +    SS++ AC N +    G+Q++   + LG  S   + N+++ MYA+   +  A
Sbjct: 151 HIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDA 210

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
           +  F  +  K++VS+ +I+ G A++ ++EE   L++E+   G+  +  TF  L+   + +
Sbjct: 211 RKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASI 270

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           G +GKG ++   +++  G   +      L+ + SR G+++ A  +   M  + +  +W +
Sbjct: 271 GAMGKGEQIHGRLLKG-GYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTS 328

Query: 413 LLSACKHH 420
           +++    H
Sbjct: 329 MITGFAKH 336


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  470 bits (1209), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/609 (39%), Positives = 366/609 (60%), Gaps = 37/609 (6%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL---VQYAHHLLE 62
           Y   L  C    +    K LH+++I+LGL     +  +L+D Y KC     V  +  + E
Sbjct: 59  YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 118

Query: 63  EMPQRDHVSWASILTAYNQAN-LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
           +MP+ + +SW +I+TAY Q+    ++ I +F  M++   ++P+HF F+S++KACG+L   
Sbjct: 119 QMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMIS-GHIRPNHFSFSSVLKACGNLSDP 177

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
             G+QV++  V       + V +SL+ MYA                              
Sbjct: 178 YTGEQVYSYAVKLGIASVNCVGNSLISMYA------------------------------ 207

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
            RSGR +DA + F+    +NL  + A+V G  ++    +AF  F E+   G+ I      
Sbjct: 208 -RSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGI-SAFTF 265

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           +S++   A+   +  G+QIHG ++  GY+S   I NA++ MY++C +I AA  +F  M  
Sbjct: 266 ASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED 325

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           ++V+SWTS+I G A+HG A   L ++ +M+  G KPNE+T+V ++ ACSHVG++ +G+K 
Sbjct: 326 RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKH 385

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F SM +++GI P ++HY C++DLL RSG L EA   I +MP   D   W  LL AC+ H 
Sbjct: 386 FNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHG 445

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           NTE+G   A  +L  +P+DP++YILLSN++ASA  W+ V K+RK M    + KE G S+I
Sbjct: 446 NTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWI 505

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E     H F+ GETSHP   +I++ L +L +++K  GY+PDT  VLHD+E+++KE+ LF 
Sbjct: 506 EVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQ 565

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSE++AVA+GL+ +     +R+ KNLRVCGDCH  +K IS  T REIVVRD+ R+HH K+
Sbjct: 566 HSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKN 625

Query: 602 GKCSCNDFW 610
           G CSCND+W
Sbjct: 626 GVCSCNDYW 634



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 177/368 (48%), Gaps = 39/368 (10%)

Query: 57  AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116
           A+ + ++MP+R+ V+W  ++T + Q    +  I +F  M  L    PD F ++S++ AC 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDM-ELSGYVPDRFTYSSVLSACT 67

Query: 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTA 176
            LG   LGKQ+H+  +      D  V  SLVDMYAKC                       
Sbjct: 68  ELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKC----------------------- 104

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS----RNEIDAFYSFIEMRREG 232
                A  G   D+ ++FEQ P  N+  WTA+++   QS    +  I+ F   I     G
Sbjct: 105 -----AADGSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMIS----G 155

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
               +    SS++ AC N +    G+Q++   + LG  S   + N+++ MYA+   +  A
Sbjct: 156 HIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDA 215

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
           +  F  +  K++VS+ +I+ G A++ ++EE   L++E+   G+  +  TF  L+   + +
Sbjct: 216 RKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASI 275

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           G +GKG ++   +++  G   +      L+ + SR G+++ A  +   M  + +  +W +
Sbjct: 276 GAMGKGEQIHGRLLKG-GYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTS 333

Query: 413 LLSACKHH 420
           +++    H
Sbjct: 334 MITGFAKH 341


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/609 (39%), Positives = 366/609 (60%), Gaps = 37/609 (6%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL---VQYAHHLLE 62
           Y   L  C    +    K LH+++I+LGL     +  +L+D Y KC     V  +  + E
Sbjct: 234 YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 293

Query: 63  EMPQRDHVSWASILTAYNQAN-LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
           +MP+ + +SW +I+TAY Q+    ++ I +F  M++   ++P+HF F+S++KACG+L   
Sbjct: 294 QMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS-GHIRPNHFSFSSVLKACGNLSDP 352

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
             G+QV++  V       + V +SL+ MYA                              
Sbjct: 353 YTGEQVYSYAVKLGIASVNCVGNSLISMYA------------------------------ 382

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
            RSGR +DA + F+    +NL  + A+V G  ++    +AF  F E+   G+ I      
Sbjct: 383 -RSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGI-SAFTF 440

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           +S++   A+   +  G+QIHG ++  GY+S   I NA++ MY++C +I AA  +F  M  
Sbjct: 441 ASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED 500

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           ++V+SWTS+I G A+HG A   L ++ +M+  G KPNE+T+V ++ ACSHVG++ +G+K 
Sbjct: 501 RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKH 560

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F SM +++GI P ++HY C++DLL RSG L EA   I +MP   D   W  LL AC+ H 
Sbjct: 561 FNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHG 620

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           NTE+G   A  +L  +P+DP++YILLSN++ASA  W+ V K+RK M    + KE G S+I
Sbjct: 621 NTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWI 680

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E     H F+ GETSHP   +I++ L +L +++K  GY+PDT  VLHD+E+++KE+ LF 
Sbjct: 681 EVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQ 740

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSE++AVA+GL+ +     +R+ KNLRVCGDCH  +K IS  T REIVVRD+ R+HH K+
Sbjct: 741 HSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKN 800

Query: 602 GKCSCNDFW 610
           G CSCND+W
Sbjct: 801 GVCSCNDYW 809



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 214/435 (49%), Gaps = 50/435 (11%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM-PQRD 68
           L+ C R +     K +H ++++ GL     + NTLI  Y KC   + A  + E M  +RD
Sbjct: 33  LKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRD 92

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW+++++ +   ++  + I  F  ML L    P+ + FA++++AC +     +G+ ++
Sbjct: 93  LVSWSAMVSCFANNSMEWQAIWTFLDMLELG-FYPNEYCFAAVIRACSNANYAWVGEIIY 151

Query: 129 ACFVLSPFCDDDV-VKSSLVDMYAK-CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
              V + + + DV V   L+DM+ K  G   +A  VFD +  +N V+WT M++ +A+ G 
Sbjct: 152 GFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGC 211

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
            +DA+++                               F++M   G  + D    SS++ 
Sbjct: 212 ARDAIDL-------------------------------FLDMELSGY-VPDRFTYSSVLS 239

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS---DIIAAKDIFGRMRRKD 303
           AC    +L LGKQ+H  VI LG    + +  ++VDMYAKC+    +  ++ +F +M   +
Sbjct: 240 ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 299

Query: 304 VVSWTSIIVGTAQHGQAE-ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           V+SWT+II    Q G+ + E + L+ +M+S  ++PN  +F  ++ AC ++     G +++
Sbjct: 300 VMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 359

Query: 363 KSMIEDYGITPSLQHYTC----LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
                 Y +   +    C    L+ + +RSG +++A      + FE +  ++ A++    
Sbjct: 360 S-----YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDIL-FEKNLVSYNAIVDGYA 413

Query: 419 HHRNTEMGTRVANHL 433
            +  +E    + N +
Sbjct: 414 KNLKSEEAFLLFNEI 428



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 199/418 (47%), Gaps = 43/418 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLG-LHQYGPLPNTLIDAY--GKCDLVQYAHHLLEEMPQ 66
           +R C+    A   + ++  ++K G L     +   LID +  G  DL   A+ + ++MP+
Sbjct: 135 IRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS-AYKVFDKMPE 193

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           R+ V+W  ++T + Q    +  I +F  M  L    PD F ++S++ AC  LG   LGKQ
Sbjct: 194 RNLVTWTLMITRFAQLGCARDAIDLFLDM-ELSGYVPDRFTYSSVLSACTELGLLALGKQ 252

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +H+  +      D  V  SLVDMYAKC                            A  G 
Sbjct: 253 LHSRVIRLGLALDVCVGCSLVDMYAKC----------------------------AADGS 284

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQS----RNEIDAFYSFIEMRREGVDIVDPLVLS 242
             D+ ++FEQ P  N+  WTA+++  VQS    +  I+ F   I     G    +    S
Sbjct: 285 VDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS----GHIRPNHFSFS 340

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           S++ AC N +    G+Q++   + LG  S   + N+++ MYA+   +  A+  F  +  K
Sbjct: 341 SVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEK 400

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           ++VS+ +I+ G A++ ++EE   L++E+   G+  +  TF  L+   + +G +GKG ++ 
Sbjct: 401 NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIH 460

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
             +++  G   +      L+ + SR G+++ A  +   M  + +  +W ++++    H
Sbjct: 461 GRLLKG-GYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKH 516



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 171/333 (51%), Gaps = 42/333 (12%)

Query: 92  FSTM--LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM 149
           FST+  +      PD   ++ L+K+C      +LGK VH   + S    D VV ++L+ +
Sbjct: 11  FSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISL 70

Query: 150 YAKCGLPNNARAVFDSIKLKNS-VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           Y+KCG    AR +F+ +  K   VSW+AM+S +A      ++ME            W A+
Sbjct: 71  YSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFA-----NNSME------------WQAI 113

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
                         ++F++M   G    +    ++++ AC+N     +G+ I+G V+  G
Sbjct: 114 --------------WTFLDMLELGF-YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTG 158

Query: 269 Y-ESCLFISNAIVDMYAKCS-DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
           Y E+ + +   ++DM+ K S D+ +A  +F +M  +++V+WT +I   AQ G A + + L
Sbjct: 159 YLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDL 218

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
           + +M  +G  P+  T+  ++ AC+ +GL+  G++L   +I   G+   +     L+D+ +
Sbjct: 219 FLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIR-LGLALDVCVGCSLVDMYA 277

Query: 387 R---SGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +    G +D++  + + MP E +  +W A+++A
Sbjct: 278 KCAADGSVDDSRKVFEQMP-EHNVMSWTAIITA 309


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/609 (39%), Positives = 366/609 (60%), Gaps = 37/609 (6%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL---VQYAHHLLE 62
           Y   L  C    +    K LH+++I+LGL     +  +L+D Y KC     V  +  + E
Sbjct: 252 YSSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFE 311

Query: 63  EMPQRDHVSWASILTAYNQAN-LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
           +MP+ + +SW +I+TAY Q+    ++ I +F  M++   ++P+HF F+S++KACG+L   
Sbjct: 312 QMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS-GHIRPNHFSFSSVLKACGNLSDP 370

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
             G+QV++  V       + V +SL+ MYA                              
Sbjct: 371 YTGEQVYSYAVKLGIASVNCVGNSLISMYA------------------------------ 400

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
            RSGR +DA + F+    +NL  + A+V G  ++    +AF  F E+   G+ I      
Sbjct: 401 -RSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGI-SAFTF 458

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           +S++   A+   +  G+QIHG ++  GY+S   I NA++ MY++C +I AA  +F  M  
Sbjct: 459 ASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMED 518

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           ++V+SWTS+I G A+HG A   L ++ +M+  G KPNE+T+V ++ ACSHVG++ +G+K 
Sbjct: 519 RNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKH 578

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F SM +++GI P ++HY C++DLL RSG L EA   I +MP   D   W  LL AC+ H 
Sbjct: 579 FNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHG 638

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           NTE+G   A  +L  +P+DP++YILLSN++ASA  W+ V K+RK M    + KE G S+I
Sbjct: 639 NTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGCSWI 698

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E     H F+ GETSHP   +I++ L +L +++K  GY+PDT  VLHD+E+++KE+ LF 
Sbjct: 699 EVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEEEQKEQFLFQ 758

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSE++AVA+GL+ +     +R+ KNLRVCGDCH  +K IS  T REIVVRD+ R+HH K+
Sbjct: 759 HSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRDSNRFHHIKN 818

Query: 602 GKCSCNDFW 610
           G CSCND+W
Sbjct: 819 GVCSCNDYW 827



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 214/435 (49%), Gaps = 50/435 (11%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM-PQRD 68
           L+ C R +     K +H ++++ GL     + NTLI  Y KC   + A  + E M  +RD
Sbjct: 51  LKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRD 110

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW+++++ +   ++  + I  F  ML L    P+ + FA++++AC +     +G+ ++
Sbjct: 111 LVSWSAMVSCFANNSMEWQAIWTFLDMLELG-FYPNEYCFAAVIRACSNANYAWVGEIIY 169

Query: 129 ACFVLSPFCDDDV-VKSSLVDMYAK-CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
              V + + + DV V   L+DM+ K  G   +A  VFD +  +N V+WT M++ +A+ G 
Sbjct: 170 GFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGC 229

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
            +DA+++                               F++M   G  + D    SS++ 
Sbjct: 230 ARDAIDL-------------------------------FLDMELSGY-VPDRFTYSSVLS 257

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS---DIIAAKDIFGRMRRKD 303
           AC    +L LGKQ+H  VI LG    + +  ++VDMYAKC+    +  ++ +F +M   +
Sbjct: 258 ACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHN 317

Query: 304 VVSWTSIIVGTAQHGQAE-ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           V+SWT+II    Q G+ + E + L+ +M+S  ++PN  +F  ++ AC ++     G +++
Sbjct: 318 VMSWTAIITAYVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVY 377

Query: 363 KSMIEDYGITPSLQHYTC----LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
                 Y +   +    C    L+ + +RSG +++A      + FE +  ++ A++    
Sbjct: 378 S-----YAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDIL-FEKNLVSYNAIVDGYA 431

Query: 419 HHRNTEMGTRVANHL 433
            +  +E    + N +
Sbjct: 432 KNLKSEEAFLLFNEI 446



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 199/418 (47%), Gaps = 43/418 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLG-LHQYGPLPNTLIDAY--GKCDLVQYAHHLLEEMPQ 66
           +R C+    A   + ++  ++K G L     +   LID +  G  DL   A+ + ++MP+
Sbjct: 153 IRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGS-AYKVFDKMPE 211

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           R+ V+W  ++T + Q    +  I +F  M  L    PD F ++S++ AC  LG   LGKQ
Sbjct: 212 RNLVTWTLMITRFAQLGCARDAIDLFLDM-ELSGYVPDRFTYSSVLSACTELGLLALGKQ 270

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +H+  +      D  V  SLVDMYAKC                            A  G 
Sbjct: 271 LHSRVIRLGLALDVCVGCSLVDMYAKC----------------------------AADGS 302

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQS----RNEIDAFYSFIEMRREGVDIVDPLVLS 242
             D+ ++FEQ P  N+  WTA+++  VQS    +  I+ F   I     G    +    S
Sbjct: 303 VDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMIS----GHIRPNHFSFS 358

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           S++ AC N +    G+Q++   + LG  S   + N+++ MYA+   +  A+  F  +  K
Sbjct: 359 SVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEK 418

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           ++VS+ +I+ G A++ ++EE   L++E+   G+  +  TF  L+   + +G +GKG ++ 
Sbjct: 419 NLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIH 478

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
             +++  G   +      L+ + SR G+++ A  +   M  + +  +W ++++    H
Sbjct: 479 GRLLKG-GYKSNQCICNALISMYSRCGNIEAAFQVFNEME-DRNVISWTSMITGFAKH 534



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 171/333 (51%), Gaps = 42/333 (12%)

Query: 92  FSTM--LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM 149
           FST+  +      PD   ++ L+K+C      +LGK VH   + S    D VV ++L+ +
Sbjct: 29  FSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISL 88

Query: 150 YAKCGLPNNARAVFDSIKLKNS-VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           Y+KCG    AR +F+ +  K   VSW+AM+S +A      ++ME            W A+
Sbjct: 89  YSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFA-----NNSME------------WQAI 131

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
                         ++F++M   G    +    ++++ AC+N     +G+ I+G V+  G
Sbjct: 132 --------------WTFLDMLELGF-YPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTG 176

Query: 269 Y-ESCLFISNAIVDMYAKCS-DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
           Y E+ + +   ++DM+ K S D+ +A  +F +M  +++V+WT +I   AQ G A + + L
Sbjct: 177 YLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDL 236

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
           + +M  +G  P+  T+  ++ AC+ +GL+  G++L   +I   G+   +     L+D+ +
Sbjct: 237 FLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIR-LGLALDVCVGCSLVDMYA 295

Query: 387 R---SGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +    G +D++  + + MP E +  +W A+++A
Sbjct: 296 KCAADGSVDDSRKVFEQMP-EHNVMSWTAIITA 327


>gi|242050732|ref|XP_002463110.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
 gi|241926487|gb|EER99631.1| hypothetical protein SORBIDRAFT_02g037960 [Sorghum bicolor]
          Length = 802

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 244/623 (39%), Positives = 349/623 (56%), Gaps = 38/623 (6%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQY---AHHLLEEMPQRDHVSWASILTAYNQ 81
           L   ++K G      + N L+  Y KC+ ++    A  +L+EMP +D ++W +++  Y +
Sbjct: 181 LQCSVLKSGAGGVLSVSNALVALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVR 240

Query: 82  ANLPQKTISIFSTM------------------------------LALDKLQPDHFVFASL 111
                   S+F  +                              + L+++  D F F S+
Sbjct: 241 RGDVGAARSVFEEVDVKFDVVWNAMISGYVHSGMVVEAFELFRRMVLERVPLDEFTFTSV 300

Query: 112 VKACGSLGATRLGKQVHACFV-LSP-FCDDDV--VKSSLVDMYAKCGLPNNARAVFDSIK 167
           + AC + G    GK VH     L P F  +    V ++LV +Y+KCG    AR +FD++K
Sbjct: 301 LSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMK 360

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            K+ VSW  +LS Y  S     A+E+FE+ P +N   W  +VSG V      DA   F  
Sbjct: 361 SKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNR 420

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           MR E V   D    +  + AC     L+ GKQ+HG ++ LG+E      NA++ MYA+C 
Sbjct: 421 MRAEDVKPCD-YTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCG 479

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            +  A  +F  M   D VSW ++I    QHG   E L L+D MV+ G+ P+ ++F+ ++ 
Sbjct: 480 AVKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFLTVLT 539

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           AC+H GLV +G + F+SM  D+GI P   HYT L+DLL R+G + EA +LIK MPFEP  
Sbjct: 540 ACNHSGLVDEGFQYFESMKRDFGIIPGEDHYTRLIDLLGRAGRIGEARDLIKTMPFEPTP 599

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
             W A+LS C+   + E+G   A+ L  + P+   +YILLSN Y++A  W   ++VRKLM
Sbjct: 600 SIWEAILSGCRTSGDMELGAHAADQLFKMTPQHDGTYILLSNTYSAAGRWVDAARVRKLM 659

Query: 468 SVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
               VKKEPG S+IE G   H+F  G+T HP   ++++ L  + A M++ GYVPDT  VL
Sbjct: 660 RDRGVKKEPGCSWIEAGNKVHVFVVGDTKHPEAHKVYKFLEMVGARMRKLGYVPDTKVVL 719

Query: 528 HDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
           HDME  +KE  LF HSERLAV +GLLK  PG  + V+KNLR+C DCH VM  +S+   RE
Sbjct: 720 HDMEPHQKEHILFAHSERLAVGFGLLKLPPGATVTVLKNLRICDDCHAVMMFMSKAVGRE 779

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           IVVRD  R+HHFKDG+CSC ++W
Sbjct: 780 IVVRDVRRFHHFKDGECSCGNYW 802



 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 125/432 (28%), Positives = 207/432 (47%), Gaps = 48/432 (11%)

Query: 34  LHQYGPLP---NTLIDAYGKCDLVQYAHHLLEEMPQ--RDHVSWASILTAYNQANLPQKT 88
           L +  P P    +L+ AY     +  A    + +PQ  RD V   ++++AY +A+     
Sbjct: 81  LFRADPCPVAATSLVAAYAAAGRLPAAVSFFDAVPQARRDTVLHNAVISAYARASHAAPA 140

Query: 89  ISIFSTMLALDKLQPDHFVFASLVKACGSLG--ATRLGKQVHACFVLSPFCDDDVVKSSL 146
           +++F ++LA   L+PD + F +L+ A G L   + R   Q+    + S       V ++L
Sbjct: 141 VAVFRSLLASGSLRPDDYSFTALLSAAGHLPNISVRHCAQLQCSVLKSGAGGVLSVSNAL 200

Query: 147 VDMYAKCGL---PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           V +Y KC       +AR V D +  K++++WT M+  Y R G    A  +FE+  V+   
Sbjct: 201 VALYMKCEALEATRDARKVLDEMPDKDALTWTTMVVGYVRRGDVGAARSVFEEVDVKFDV 260

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
           +W A++SG V S   ++AF  F  M  E V + D    +S++ ACAN      GK +HG 
Sbjct: 261 VWNAMISGYVHSGMVVEAFELFRRMVLERVPL-DEFTFTSVLSACANAGFFAHGKSVHGQ 319

Query: 264 VIALG----YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH-- 317
           +  L      E+ L ++NA+V +Y+KC +I  A+ IF  M+ KDVVSW +I+ G  +   
Sbjct: 320 ITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMKSKDVVSWNTILSGYVESSC 379

Query: 318 -----------------------------GQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
                                        G +E+ L L++ M +  VKP + T+ G I A
Sbjct: 380 LDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNRMRAEDVKPCDYTYAGAISA 439

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           C  +G +  G++L   +++  G   S      L+ + +R G + EA  +   MP   D  
Sbjct: 440 CGELGSLKHGKQLHGHLVQ-LGFEGSNSAGNALITMYARCGAVKEANLMFLVMP-NIDSV 497

Query: 409 TWAALLSACKHH 420
           +W A++SA   H
Sbjct: 498 SWNAMISALGQH 509



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 119/266 (44%), Gaps = 50/266 (18%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYG----PLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           L  CA        K++H QI +L  +       P+ N L+  Y KC  +  A  + + M 
Sbjct: 301 LSACANAGFFAHGKSVHGQITRLQPNFVPEAALPVNNALVTLYSKCGNIAVARRIFDNMK 360

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTM------------------------------ 95
            +D VSW +IL+ Y +++   K + +F  M                              
Sbjct: 361 SKDVVSWNTILSGYVESSCLDKAVEVFEEMPYKNELSWMVMVSGYVHGGFSEDALKLFNR 420

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
           +  + ++P  + +A  + ACG LG+ + GKQ+H   V   F   +   ++L+ MYA+CG 
Sbjct: 421 MRAEDVKPCDYTYAGAISACGELGSLKHGKQLHGHLVQLGFEGSNSAGNALITMYARCGA 480

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA------PVRNLFLWTALV 209
              A  +F  +   +SVSW AM+SA  + G  ++A+E+F++       P R  FL T L 
Sbjct: 481 VKEANLMFLVMPNIDSVSWNAMISALGQHGHGREALELFDRMVAEGIYPDRISFL-TVLT 539

Query: 210 ----SGLVQSRNEIDAFYSFIEMRRE 231
               SGLV      + F  F  M+R+
Sbjct: 540 ACNHSGLVD-----EGFQYFESMKRD 560



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 85/185 (45%), Gaps = 13/185 (7%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LH  +++LG        N LI  Y +C  V+ A+ +   MP  D VSW ++++A  Q 
Sbjct: 450 KQLHGHLVQLGFEGSNSAGNALITMYARCGAVKEANLMFLVMPNIDSVSWNAMISALGQH 509

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC----FVLSPFCD 138
              ++ + +F  M+A + + PD   F +++ AC   G    G Q        F + P  D
Sbjct: 510 GHGREALELFDRMVA-EGIYPDRISFLTVLTACNHSGLVDEGFQYFESMKRDFGIIPGED 568

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGRKK----DAMEI 193
                + L+D+  + G    AR +  ++  + + S W A+LS    SG  +     A ++
Sbjct: 569 H---YTRLIDLLGRAGRIGEARDLIKTMPFEPTPSIWEAILSGCRTSGDMELGAHAADQL 625

Query: 194 FEQAP 198
           F+  P
Sbjct: 626 FKMTP 630


>gi|34393605|dbj|BAC83258.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
 gi|50509373|dbj|BAD30928.1| pentatricopeptide (PPR) repeat-containing protein-like protein
           [Oryza sativa Japonica Group]
          Length = 808

 Score =  468 bits (1205), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 245/624 (39%), Positives = 352/624 (56%), Gaps = 40/624 (6%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQY---AHHLLEEMPQRDHVSWASI------ 75
           LH  ++K G      + N LI  Y KCD  +    A  +L+EMP +D ++W ++      
Sbjct: 187 LHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVR 246

Query: 76  -------------------------LTAYNQANLPQKTISIFSTMLALDKLQPDHFVFAS 110
                                    ++ Y Q+ +      +F  M++ +K+  D F F S
Sbjct: 247 RGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVS-EKVPLDEFTFTS 305

Query: 111 LVKACGSLGATRLGKQVHACFV-LSP-FCDDDV--VKSSLVDMYAKCGLPNNARAVFDSI 166
           ++ AC + G    GK VH   + L P F  +    V ++LV +Y+K G    A+ +FD++
Sbjct: 306 VLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTM 365

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
            LK+ VSW  +LS Y  SG    A+E+F+  P +N   W  +VSG V      DA   F 
Sbjct: 366 NLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFN 425

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           +MR E V   D    +  + AC     L+ G+Q+H  ++  G+E+     NA++ MYAKC
Sbjct: 426 QMRAEDVKPCD-YTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKC 484

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             +  A+ +F  M   D VSW ++I    QHG   E L L+D+MV+ G+ P+ ++F+ ++
Sbjct: 485 GAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTIL 544

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            AC+H GLV +G   F+SM  D+GI+P   HY  L+DLL RSG + EA +LIK MPFEP 
Sbjct: 545 TACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPT 604

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKL 466
              W A+LS C+ + + E G   A+ L  + P+   +YILLSN Y++A  W   ++VRKL
Sbjct: 605 PSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKL 664

Query: 467 MSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSV 526
           M    VKKEPG S+IE G   H+F  G+T HP   E+++ L  + A M++ GYVPDT  V
Sbjct: 665 MRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFV 724

Query: 527 LHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKR 586
           LHDME  EKE  LF HSE+LAV +GLLK  PG  + V+KNLR+CGDCH  M  +S+   R
Sbjct: 725 LHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGR 784

Query: 587 EIVVRDATRYHHFKDGKCSCNDFW 610
           EIVVRD  R+HHFKDG+CSC ++W
Sbjct: 785 EIVVRDVRRFHHFKDGECSCGNYW 808



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 125/426 (29%), Positives = 205/426 (48%), Gaps = 46/426 (10%)

Query: 38  GPLPNT-LIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTAYNQANLPQKTISIFST 94
           GP+  T L+ A+     ++ A    + +P  +RD V   ++++A+ +A+L    +S+F  
Sbjct: 93  GPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHA 152

Query: 95  MLALDKLQPDHFVFASLVKACGSLG--ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK 152
           +L    L+PD + F +L+ A G +   A     Q+H   + S       V ++L+ +Y K
Sbjct: 153 LLGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMK 212

Query: 153 CGLPN---NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALV 209
           C  P    +AR V D +  K+ ++WT M+  Y R G    A  +FE+   +   +W A++
Sbjct: 213 CDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMI 272

Query: 210 SGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG- 268
           SG VQS    DAF  F  M  E V + D    +S++ ACAN      GK +HG +I L  
Sbjct: 273 SGYVQSGMCADAFELFRRMVSEKVPL-DEFTFTSVLSACANAGFFVHGKSVHGQIIRLQP 331

Query: 269 ---YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI--------------- 310
               E+ L ++NA+V +Y+K   I+ AK IF  M  KDVVSW +I               
Sbjct: 332 NFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVE 391

Query: 311 ----------------IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL 354
                           + G    G +E+ L L+++M +  VKP + T+ G I AC  +G 
Sbjct: 392 VFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGA 451

Query: 355 VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           +  GR+L   +++  G   S      LL + ++ G +++A  +   MP   D  +W A++
Sbjct: 452 LKHGRQLHAHLVQ-CGFEASNSAGNALLTMYAKCGAVNDARLVFLVMP-NLDSVSWNAMI 509

Query: 415 SACKHH 420
           SA   H
Sbjct: 510 SALGQH 515



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 124/298 (41%), Gaps = 44/298 (14%)

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV--RNLFLWTALVSGLVQSR-- 216
           A+F S      V+ T++++A+A +GR +DA   F+  P   R+  L  A++S   ++   
Sbjct: 84  ALFRSDPDPGPVAATSLVAAHAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLA 143

Query: 217 -NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI 275
              +  F++ +       D      L S VG   N A      Q+H  V+  G  + L +
Sbjct: 144 APAVSVFHALLGSGSLRPDDYSFTALISAVGQMHNLAAPHC-TQLHCSVLKSGAAAVLSV 202

Query: 276 SNAIVDMYAKC----------------------------------SDIIAAKDIFGRMRR 301
           SNA++ +Y KC                                   D+ AA+ +F  +  
Sbjct: 203 SNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDG 262

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           K  V W ++I G  Q G   +   L+  MVS  V  +E TF  ++ AC++ G    G+ +
Sbjct: 263 KFDVVWNAMISGYVQSGMCADAFELFRRMVSEKVPLDEFTFTSVLSACANAGFFVHGKSV 322

Query: 362 FKSMIE---DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
              +I    ++    +L     L+ L S+ G +  A+ +   M  + D  +W  +LS 
Sbjct: 323 HGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLK-DVVSWNTILSG 379



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHA +++ G        N L+  Y KC  V  A  +   MP  D VSW ++++A  Q 
Sbjct: 456 RQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQH 515

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----KQVHACFVLSPFCD 138
              ++ + +F  M+A + + PD   F +++ AC   G    G    + +   F +SP  D
Sbjct: 516 GHGREALELFDQMVA-EGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGED 574

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSG 185
                + L+D+  + G    AR +  ++  + + S W A+LS    +G
Sbjct: 575 H---YARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNG 619


>gi|449470118|ref|XP_004152765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/574 (39%), Positives = 345/574 (60%), Gaps = 10/574 (1%)

Query: 43  TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQ 102
           T+I  Y + D +  A  + E M +    +W ++++ Y      Q+ +++   M  L  +Q
Sbjct: 228 TMITGYVRNDDLNGAREVFEAMVENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLG-IQ 286

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFV---LSP---FCDDDVVKSSLVDMYAKCGLP 156
            D   + +++ AC ++G+ ++GKQ+HA  +   L+P   FC    V ++L+ +Y K    
Sbjct: 287 FDDITYTTIISACANVGSFQMGKQMHAYILKNELNPNHSFCLS--VSNALITLYCKNNKV 344

Query: 157 NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
           + AR +F ++ ++N ++W A+LS Y  +GR ++A   FE+ PV+NL   T ++SGL Q+ 
Sbjct: 345 DEARKIFYAMPVRNIITWNAILSGYVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNG 404

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
              +    F +MR +G +  D    +  + AC+    LE G+Q+H  ++ LGYES L + 
Sbjct: 405 FGDEGLKLFKQMRLDGFEPCD-FAFAGALTACSVLGALENGRQLHAQLVHLGYESSLSVG 463

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
           NA++ MYAKC  + AA+ +F  M   D+VSW S+I    QHG   + + L+D+M+  GV 
Sbjct: 464 NAMISMYAKCGVVEAAESVFVTMPSVDLVSWNSMIAALGQHGHGVKAIELFDQMLKEGVF 523

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
           P+ +TF+ ++ ACSH GLV KGR  F SM+E YGITP   HY  ++DL  R+G    A  
Sbjct: 524 PDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAGMFSYARI 583

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           +I +MP +P  P W ALL+ C+ H N ++G   A  L  L P++  +Y+LLSN+YA    
Sbjct: 584 VIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKLMPQNDGTYVLLSNIYADVGR 643

Query: 457 WQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKR 516
           W  V+KVRKLM    V+KEP  S+IE     H+F   +  HP    ++  L +L  EMK+
Sbjct: 644 WNDVAKVRKLMRDQAVRKEPACSWIEVENKVHVFMVDDDVHPEVLSVYRYLEQLGLEMKK 703

Query: 517 RGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIV 576
            GY+PDT  VLHDME ++KE  L  HSE+LAV +G++K  P   +RV KN+R+CGDCH  
Sbjct: 704 LGYIPDTKFVLHDMEYEQKEHALSTHSEKLAVGFGIMKLPPDATVRVFKNIRICGDCHNA 763

Query: 577 MKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            K +S++ +REI+VRD  R+HHFK+G CSC D+W
Sbjct: 764 FKFMSKVARREIIVRDRKRFHHFKNGDCSCRDYW 797



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/497 (25%), Positives = 221/497 (44%), Gaps = 84/497 (16%)

Query: 4   SHYLHRLRVCARHQIAL--TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
           + Y  +L++C+    A     + +HA +I  G    G   N L++ Y K   V YA  L 
Sbjct: 12  NRYAEKLQLCSPQDPASFSLARAVHAHMIASGFKPRGHFLNRLLEMYCKSSNVVYARQLF 71

Query: 62  EEMPQRDHVSWASILTAY-------------NQANLPQKTISIFSTMLA----------- 97
           EE+P  D ++  +++TAY             N   L  +    ++ M+            
Sbjct: 72  EEIPNPDAIARTTLITAYCALGNLELGREIFNGTPLYMRDSVFYNAMITGYAHNGDGHSA 131

Query: 98  --------LDKLQPDHFVFASLVKACG-SLGATRLGKQVHACFVLSPF-CDDDVVKSSLV 147
                    D  +PD F F S++ A    +G  +   Q+H   V +   C    V ++L+
Sbjct: 132 LELFRAMRRDDFRPDDFTFTSVLSALVLFVGNEQQCGQMHCAVVKTGMGCVSSSVLNALL 191

Query: 148 DMYAK--------CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
            +Y K        C    +AR +FD +  ++ ++WT M++ Y R+     A E+FE A V
Sbjct: 192 SVYVKRASELGIPCSAMVSARKLFDEMPKRDELTWTTMITGYVRNDDLNGAREVFE-AMV 250

Query: 200 RNL-FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            NL   W A++SG V      +A     +MR  G+   D +  ++I+ ACAN    ++GK
Sbjct: 251 ENLGAAWNAMISGYVHCGCFQEALTLCRKMRFLGIQF-DDITYTTIISACANVGSFQMGK 309

Query: 259 QIHGLVIA----LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI---- 310
           Q+H  ++       +  CL +SNA++ +Y K + +  A+ IF  M  +++++W +I    
Sbjct: 310 QMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSGY 369

Query: 311 ---------------------------IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
                                      I G AQ+G  +E L L+ +M   G +P +  F 
Sbjct: 370 VNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAFA 429

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
           G + ACS +G +  GR+L   ++   G   SL     ++ + ++ G ++ AE++   MP 
Sbjct: 430 GALTACSVLGALENGRQLHAQLVH-LGYESSLSVGNAMISMYAKCGVVEAAESVFVTMP- 487

Query: 404 EPDEPTWAALLSACKHH 420
             D  +W ++++A   H
Sbjct: 488 SVDLVSWNSMIAALGQH 504



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 92/380 (24%), Positives = 160/380 (42%), Gaps = 72/380 (18%)

Query: 23  KTLHAQIIKLGL---HQYG-PLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           K +HA I+K  L   H +   + N LI  Y K + V  A  +   MP R+ ++W +IL+ 
Sbjct: 309 KQMHAYILKNELNPNHSFCLSVSNALITLYCKNNKVDEARKIFYAMPVRNIITWNAILSG 368

Query: 79  YNQANLPQKTISIFSTM------------------------------LALDKLQPDHFVF 108
           Y  A   ++  S F  M                              + LD  +P  F F
Sbjct: 369 YVNAGRMEEAKSFFEEMPVKNLLTLTVMISGLAQNGFGDEGLKLFKQMRLDGFEPCDFAF 428

Query: 109 ASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL 168
           A  + AC  LGA   G+Q+HA  V   +     V ++++ MYAKCG+   A +VF ++  
Sbjct: 429 AGALTACSVLGALENGRQLHAQLVHLGYESSLSVGNAMISMYAKCGVVEAAESVFVTMPS 488

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228
            + VSW +M++A  + G    A+E+F+Q                               M
Sbjct: 489 VDLVSWNSMIAALGQHGHGVKAIELFDQ-------------------------------M 517

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQ-IHGLVIALGYESCLFISNAIVDMYAKCS 287
            +EGV   D +   +++ AC++  ++E G+   + ++ + G   C      +VD++ +  
Sbjct: 518 LKEGV-FPDRITFLTVLTACSHAGLVEKGRHYFNSMLESYGITPCEDHYARMVDLFCRAG 576

Query: 288 DIIAAKDIFGRMRRKDVVS-WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
               A+ +   M  K     W +++ G   HG  +  +   +++    +  N+ T+V L 
Sbjct: 577 MFSYARIVIDSMPSKPGAPVWEALLAGCRIHGNMDLGIEAAEQLFKL-MPQNDGTYVLLS 635

Query: 347 YACSHVGL---VGKGRKLFK 363
              + VG    V K RKL +
Sbjct: 636 NIYADVGRWNDVAKVRKLMR 655


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 229/638 (35%), Positives = 366/638 (57%), Gaps = 63/638 (9%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S Y   ++ C + ++    K +H  I   G      + N L++ Y KCD +  +  L +E
Sbjct: 71  SVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLFDE 130

Query: 64  MPQR-------------------------------DHVSWASILTAYNQANLPQKTISIF 92
           MP+R                               D+ SW ++++ Y + + P + + +F
Sbjct: 131 MPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELF 190

Query: 93  STMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK 152
             M   D  + + F  +S + A  ++   R+GK++H   + +    D+VV S+L DMY K
Sbjct: 191 RMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGK 250

Query: 153 CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGL 212
           CG    AR +FD +  ++ V+WTAM+  Y + GR+K+  ++                   
Sbjct: 251 CGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDL------------------- 291

Query: 213 VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC 272
                       F ++ R G+   +    S ++ ACAN    ELGK++HG +  +G++  
Sbjct: 292 ------------FADLLRSGIR-PNEFTFSGVLNACANQTSEELGKKVHGYMTRVGFDPF 338

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
            F ++A+V MY+KC ++++A+ +F    + D+ SWTS+I G AQ+GQ +E +  ++ +V 
Sbjct: 339 SFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVK 398

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
           +G +P+ +TFVG++ AC+H GLV KG   F S+ E YG+T +  HY C++DLL+RSG  D
Sbjct: 399 SGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFD 458

Query: 393 EAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           EAEN+I  M  +PD+  WA+LL  C+ H N ++  R A  L  ++PE+P++Y+ L+N+YA
Sbjct: 459 EAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENPATYVTLANIYA 518

Query: 453 SAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDA 512
           +A MW  V+K+RK M    V K+PG S+I   +  H+F  G+ SHP   EI E L +L  
Sbjct: 519 TAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIKRDVHVFLVGDDSHPKSKEINEFLGKLSK 578

Query: 513 EMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGD 572
            MK  G+VPDT+ VLHD+E ++KE+ L +HSE+LAVA+G++ +  GT ++V KNLR C D
Sbjct: 579 RMKEEGFVPDTNFVLHDVEDEQKEQNLSYHSEKLAVAFGIISTPEGTPIKVFKNLRTCVD 638

Query: 573 CHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           CH  +K IS+IT R+I+VRD+ R+H F+DG CSC D+W
Sbjct: 639 CHTAIKFISKITNRKIIVRDSNRFHFFEDGHCSCRDYW 676



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 97/315 (30%), Positives = 176/315 (55%), Gaps = 2/315 (0%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +P   V+++L+++C      + GK+VH    LS F     + + L++MYAKC    +++ 
Sbjct: 67  KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQK 126

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +FD +  ++  SW  ++S YA+ G  ++A  +F++ P R+ F WTA++SG V+     +A
Sbjct: 127 LFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEA 186

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M+R      +   +SS + A A    L +GK+IHG ++  G +S   + +A+ D
Sbjct: 187 LELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSD 246

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  I  A+ IF +M  +D+V+WT++I    Q G+ +E   L+ +++ +G++PNE T
Sbjct: 247 MYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFT 306

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F G++ AC++      G+K+   M    G  P     + L+ + S+ G++  AE + K  
Sbjct: 307 FSGVLNACANQTSEELGKKVHGYMTR-VGFDPFSFAASALVHMYSKCGNMVSAERVFKET 365

Query: 402 PFEPDEPTWAALLSA 416
           P +PD  +W +L++ 
Sbjct: 366 P-QPDLFSWTSLIAG 379



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 127/309 (41%), Gaps = 75/309 (24%)

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
           +D     V S+++ +C    +L+ GK++H  +   G+   LFI N +++MYAKC  ++ +
Sbjct: 65  IDKPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDS 124

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV--------------------- 331
           + +F  M  +D+ SW  +I G A+ G  +E  +L+D+M                      
Sbjct: 125 QKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPN 184

Query: 332 -----------SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
                      S   K N+ T    + A + V  +  G+++    I   G+      ++ 
Sbjct: 185 EALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEI-HGYIMRTGLDSDEVVWSA 243

Query: 381 LLDLLSRSGHLDEAENLIKAM----------------------------------PFEPD 406
           L D+  + G ++EA ++   M                                     P+
Sbjct: 244 LSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPN 303

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKL 466
           E T++ +L+AC +  + E+G +V  ++  +   DP S       +A++A+    SK   +
Sbjct: 304 EFTFSGVLNACANQTSEELGKKVHGYMTRVG-FDPFS-------FAASALVHMYSKCGNM 355

Query: 467 MSVMEVKKE 475
           +S   V KE
Sbjct: 356 VSAERVFKE 364


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like
            [Vitis vinifera]
          Length = 1058

 Score =  468 bits (1203), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 212/572 (37%), Positives = 360/572 (62%), Gaps = 9/572 (1%)

Query: 42   NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
            N +I  Y +  +++ A  L ++MP ++  SWA+++  + Q    ++ + +   +     +
Sbjct: 493  NAIIAGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSV 552

Query: 102  QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             P    F S + AC ++G   +G+ +H+  + +    +  V + L+ MYAKCG   +   
Sbjct: 553  -PSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSH 611

Query: 162  VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
            VF +I++K++VSW +++S  + +    DA  +FE+ P R++  WTA++S  VQ+ +   A
Sbjct: 612  VFRTIRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVA 671

Query: 222  FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
               F++M   G+   + L ++S++ AC N   ++LG+Q H L+  LG+++ LF+ N+++ 
Sbjct: 672  LDLFLDMLARGIK-PNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLIT 730

Query: 282  MYAKCSDIIAAKD---IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
            MY KC      +D   +F  M   D+++W +++VG AQ+G  +E + ++++M   G+ P+
Sbjct: 731  MYFKC----GYEDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPD 786

Query: 339  EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
            +++F+G++ ACSH GLV +G   F SM + YGI P + HYTC++DLL R+G+L EAE LI
Sbjct: 787  QMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALI 846

Query: 399  KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
            + MP +PD   W ALL AC+ HRN E+G RVA  L  +     ++Y+LLSN++AS  MW 
Sbjct: 847  ENMPVKPDSVIWEALLGACRIHRNVELGQRVAERLFQMTKPKSATYVLLSNLFASQGMWD 906

Query: 459  HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
             V+++RKLM    + KEPG S+I+     H F  G+ +H   +EI+  L E     +  G
Sbjct: 907  KVAEIRKLMKDQGLTKEPGISWIQVKNKLHCFVTGDRTHDQIEEIYSALKEYYGCFRATG 966

Query: 519  YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
            Y+PDT+ VLHD+E+++K+ +L +HSE+LAV +G+L +  G+ ++++KNLR+CGDCH  MK
Sbjct: 967  YMPDTNFVLHDVEEEQKQNELLYHSEKLAVVFGILSTPNGSPIQIIKNLRICGDCHTFMK 1026

Query: 579  MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             +S++T R+I++RD  R+HHF+DG CSC D+W
Sbjct: 1027 FMSKVTLRKIIIRDGNRFHHFRDGSCSCGDYW 1058



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 115/430 (26%), Positives = 197/430 (45%), Gaps = 75/430 (17%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           + +L    IK G      + + +++AY +   +  A H  E MP+R+  SW +++ A+ Q
Sbjct: 380 IGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQ 439

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
                  I ++                             R+ +Q  A            
Sbjct: 440 CGRLDDAIQLYE----------------------------RVPEQTVA------------ 459

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
            K++++  YA+ G    AR +FD I   N V+W A+++ Y ++G  K+A ++F++ PV+N
Sbjct: 460 TKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKN 519

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
              W A+++G VQ+    +A    IE+ R G    D    +S + ACAN   +E+G+ IH
Sbjct: 520 SASWAAMIAGFVQNEESREALELLIELHRSGSVPSDS-SFTSALSACANIGDVEIGRVIH 578

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDI---------IAAKD------------------ 294
            L I  G +   ++ N ++ MYAKC ++         I  KD                  
Sbjct: 579 SLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLD 638

Query: 295 ----IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350
               +F +M ++DVVSWT+II    Q G  E  L L+ +M++ G+KPN++T   L+ AC 
Sbjct: 639 DARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLLSACG 698

Query: 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTW 410
           ++G +  G + F ++I   G    L     L+ +  + G+ D    + + MP E D  TW
Sbjct: 699 NLGAIKLGEQ-FHALIFKLGFDTFLFVGNSLITMYFKCGYED-GFCVFEEMP-EHDLITW 755

Query: 411 AALLSACKHH 420
            A+L  C  +
Sbjct: 756 NAVLVGCAQN 765



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 181/377 (48%), Gaps = 24/377 (6%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT I   G+   V+ A  +  EM QRD VSW S++  Y+Q     +   +F         
Sbjct: 175 NTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLF--------- 225

Query: 102 QPDHFVFASLVKACGSL-GATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNA 159
             D FV  ++      L G  + G+   A  V     + +VV  ++++  Y + G   NA
Sbjct: 226 --DAFVGKNIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNA 283

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           R +FD +  KN  SW ++++ Y    R  +A E+F+Q P RN   W  ++SG V   +  
Sbjct: 284 RKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYW 343

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           +A+  F++M R  V   D  +   ++ A      LEL   +  + I  GYE  + + +AI
Sbjct: 344 EAWDVFVKMCRT-VARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAI 402

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           ++ Y +   +  A   F  M  ++  SWT++I   AQ G+ ++ + LY+ +    V    
Sbjct: 403 LNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV---- 458

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
            T   ++ A + VG + K R +F     D  + P++  +  ++   +++G L EA++L +
Sbjct: 459 ATKTAMMTAYAQVGRIQKARLIF-----DEILNPNVVAWNAIIAGYTQNGMLKEAKDLFQ 513

Query: 400 AMPFEPDEPTWAALLSA 416
            MP + +  +WAA+++ 
Sbjct: 514 KMPVK-NSASWAAMIAG 529



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 109/434 (25%), Positives = 185/434 (42%), Gaps = 89/434 (20%)

Query: 122 RLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
           RLG+   A  V +     DVV  +S+++ Y++ G  + AR +FD+   KN  +WT +L+ 
Sbjct: 183 RLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIRTWTILLTG 242

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           YA+ GR ++A E+FE    RN+  W A++SG VQ+ +  +A   F EM  + V       
Sbjct: 243 YAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNV------- 295

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
                   A++                         N++V  Y  C  +  A+++F +M 
Sbjct: 296 --------ASW-------------------------NSVVTGYCHCYRMSEARELFDQMP 322

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG---LVGK 357
            ++ VSW  +I G        E   ++ +M     +P++  FV ++ A + +    L+G 
Sbjct: 323 ERNSVSWMVMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGS 382

Query: 358 GRKL-FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            R +  K+  E   +  S      +L+  +R+G LD A +  + MP E +E +W  +++A
Sbjct: 383 LRPIAIKTGYEGDVVVGS-----AILNAYTRNGSLDLAMHFFETMP-ERNEYSWTTMIAA 436

Query: 417 ---CKHHRNT-EMGTRVANHLLSLKPEDPSSY---------------ILLSNVYASAAMW 457
              C    +  ++  RV    ++ K    ++Y               IL  NV A  A+ 
Sbjct: 437 FAQCGRLDDAIQLYERVPEQTVATKTAMMTAYAQVGRIQKARLIFDEILNPNVVAWNAII 496

Query: 458 QHVSK------VRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELD 511
              ++       + L   M VK    ++ +  G     F   E S     E  ELL EL 
Sbjct: 497 AGYTQNGMLKEAKDLFQKMPVKNSASWAAMIAG-----FVQNEESR----EALELLIEL- 546

Query: 512 AEMKRRGYVPDTSS 525
               R G VP  SS
Sbjct: 547 ---HRSGSVPSDSS 557



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 165/402 (41%), Gaps = 69/402 (17%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S +   L  CA        + +H+  IK G      + N LI  Y KC  V+   H+   
Sbjct: 556 SSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRT 615

Query: 64  MPQRDHVSWAS-------------------------------ILTAYNQANLPQKTISIF 92
           +  +D VSW S                               I++AY QA   +  + +F
Sbjct: 616 IRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLF 675

Query: 93  STMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK 152
             MLA   ++P+     SL+ ACG+LGA +LG+Q HA      F     V +SL+ MY K
Sbjct: 676 LDMLA-RGIKPNQLTVTSLLSACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFK 734

Query: 153 CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGL 212
           CG   +   VF+ +   + ++W A+L   A++G  K+A++IFEQ                
Sbjct: 735 CGY-EDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQ---------------- 777

Query: 213 VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG-KQIHGLVIALGYES 271
                          M  EG+ + D +    ++ AC++  +++ G    + +    G   
Sbjct: 778 ---------------MEVEGI-LPDQMSFLGVLCACSHAGLVDEGWAHFNSMTQKYGIMP 821

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-DVVSWTSIIVGTAQHGQAEETLALYDEM 330
            ++    +VD+  +   +  A+ +   M  K D V W +++     H   E    + + +
Sbjct: 822 LVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELGQRVAERL 881

Query: 331 VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
                KP   T+V L    +  G+  K  ++ + +++D G+T
Sbjct: 882 FQM-TKPKSATYVLLSNLFASQGMWDKVAEI-RKLMKDQGLT 921



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 89/181 (49%), Gaps = 17/181 (9%)

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           LF  N  +    +   +  A+ +F  M ++DVVSW S+I G +Q+G+ +E   L+D  V 
Sbjct: 171 LFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVG 230

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
             ++    T+  L+   +  G + + R++F+SM E   ++     +  ++    ++G L 
Sbjct: 231 KNIR----TWTILLTGYAKEGRIEEAREVFESMTERNVVS-----WNAMISGYVQNGDLK 281

Query: 393 EAENLIKAMPFEPDEPTWAALLSA-CKHHRNTEMGTRVANHLLSLKPEDPS-SYILLSNV 450
            A  L   MP E +  +W ++++  C  +R +E     A  L    PE  S S++++ + 
Sbjct: 282 NARKLFDEMP-EKNVASWNSVVTGYCHCYRMSE-----ARELFDQMPERNSVSWMVMISG 335

Query: 451 Y 451
           Y
Sbjct: 336 Y 336


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 227/588 (38%), Positives = 354/588 (60%), Gaps = 33/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H +I K GL     +  +L+  Y KC  +  A  + +++P+++ V+W  ++  Y Q 
Sbjct: 217 QKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQ 276

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 + +   M   + + P+   + S+++ C +  A   GK+VH   + S +  +  V
Sbjct: 277 GQVDVALELLEKMQQAE-VAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWV 335

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+ MY KCG                                 K+A ++F   P R++
Sbjct: 336 VNALITMYCKCG-------------------------------GLKEARKLFGDLPHRDV 364

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WTA+V+G  Q     +A   F  M+++G+   D +  +S + +C++ A L+ GK IH 
Sbjct: 365 VTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIK-PDKMTFTSALTSCSSPAFLQEGKSIHQ 423

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            ++  GY   +++ +A+V MYAKC  +  A+ +F +M  ++VV+WT++I G AQHG+  E
Sbjct: 424 QLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCRE 483

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L  +++M   G+KP++VTF  ++ AC+HVGLV +GRK F+SM  DYGI P ++HY+C +
Sbjct: 484 ALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFV 543

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+GHL+EAEN+I  MPF+P    W ALLSAC+ H + E G R A ++L L P+D  
Sbjct: 544 DLLGRAGHLEEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDG 603

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y+ LSN+YA+A  ++   KVR++M   +V KEPG S+IE     H+F+  + SHP   E
Sbjct: 604 AYVALSNIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVDGKVHVFHVEDKSHPEAKE 663

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L +L  ++K +GYVPDT  VLHD+++++K + L  HSERLA+ YGL+K+ PGT +R
Sbjct: 664 IYAELGKLTEQIKEQGYVPDTRFVLHDVDEEQKVQTLCSHSERLAITYGLMKTPPGTPIR 723

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +VKNLRVCGDCH   K IS++  REI+ RDA R+HHF DG CSC DFW
Sbjct: 724 IVKNLRVCGDCHTASKFISKVVGREIIARDAHRFHHFVDGVCSCGDFW 771



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 207/412 (50%), Gaps = 37/412 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CAR +     + +HA I+K G+     L NTL+  Y KC  +  A  + + +  R+ 
Sbjct: 103 LQECARLRSLEQGREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNI 162

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++ A+   N   +    + TM  L   +PD   F SL+ A  +    ++G++VH 
Sbjct: 163 VSWTAMIEAFVAGNQNLEAYKCYETM-KLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHM 221

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               +    +  V +SLV MYAKCG  + A+ +FD +  KN V+WT +++ YA+ G+   
Sbjct: 222 EIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDV 281

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+E+ E+                               M++  V   + +  +SI+  C 
Sbjct: 282 ALELLEK-------------------------------MQQAEV-APNKITYTSILQGCT 309

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LE GK++H  +I  GY   +++ NA++ MY KC  +  A+ +FG +  +DVV+WT+
Sbjct: 310 TPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTA 369

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-D 368
           ++ G AQ G  +E + L+  M   G+KP+++TF   + +CS    + +G+ + + ++   
Sbjct: 370 MVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAFLQEGKSIHQQLVHAG 429

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           Y +   LQ  + L+ + ++ G +D+A  +   M  E +   W A+++ C  H
Sbjct: 430 YSLDVYLQ--SALVSMYAKCGSMDDARLVFNQMS-ERNVVAWTAMITGCAQH 478



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 164/331 (49%), Gaps = 35/331 (10%)

Query: 86  QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS 145
           ++ + I +TM+ L   +    VF  L++ C  L +   G++VHA  + S    +  ++++
Sbjct: 78  KEALGILNTMI-LQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENT 136

Query: 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLW 205
           L+ MYAKCG   +AR VFD I+ +N VSWTAM+ A+                        
Sbjct: 137 LLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAF------------------------ 172

Query: 206 TALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265
                  V     ++A+  +  M+  G    D +   S++ A  N  +L++G+++H  + 
Sbjct: 173 -------VAGNQNLEAYKCYETMKLAGCK-PDKVTFVSLLNAFTNPELLQVGQKVHMEIA 224

Query: 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA 325
             G E    +  ++V MYAKC DI  A+ IF ++  K+VV+WT +I G AQ GQ +  L 
Sbjct: 225 KAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALE 284

Query: 326 LYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385
           L ++M  A V PN++T+  ++  C+    +  G+K+ + +I+  G    +     L+ + 
Sbjct: 285 LLEKMQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQS-GYGREIWVVNALITMY 343

Query: 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            + G L EA  L   +P   D  TW A+++ 
Sbjct: 344 CKCGGLKEARKLFGDLPHR-DVVTWTAMVTG 373



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 106/240 (44%), Gaps = 6/240 (2%)

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
            R+ D ++ +  +    + G+ +E L + + M+  G +     F GL+  C+ +  + +G
Sbjct: 56  FRKVDTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQG 115

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA-C 417
           R++  ++++  GI P+      LL + ++ G L +A  +   +  + +  +W A++ A  
Sbjct: 116 REVHAAILKS-GIQPNRYLENTLLSMYAKCGSLTDARRVFDGIR-DRNIVSWTAMIEAFV 173

Query: 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEP- 476
             ++N E         L+    D  +++ L N + +  + Q   KV   ++   ++ EP 
Sbjct: 174 AGNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPR 233

Query: 477 -GYSYIE-FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE 534
            G S +  + K   I  A      L ++     T L A   ++G V     +L  M+Q E
Sbjct: 234 VGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAE 293


>gi|297734304|emb|CBI15551.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/657 (37%), Positives = 373/657 (56%), Gaps = 60/657 (9%)

Query: 8   HRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR 67
           H LR C R++     + L  Q+ +  +  +    N ++  Y +   V+ A  + +EMP +
Sbjct: 35  HDLRGCVRYRNLRAARLLFDQMPERDVVSW----NAMLSGYAQNGYVKEAKEIFDEMPCK 90

Query: 68  DHVSWASILTAYNQANLPQKTISIFST-----MLALDKLQPDHFVFASLVKACGSL---- 118
           + +SW  +L AY Q    +    +F +     +++ + +   +     LV A G      
Sbjct: 91  NSISWNGMLAAYVQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMP 150

Query: 119 ------------GATRLGKQVHA--CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFD 164
                       G  + G+ + A   F  SP   D    +++V  Y + G+ + AR VFD
Sbjct: 151 ERDEVSWNTMISGYAQNGELLEAQRLFEESP-VRDVFTWTAMVSGYVQNGMLDEARRVFD 209

Query: 165 SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSG------LVQSRNE 218
            +  KNSVSW A+++ Y +  R   A E+FE  P +N+  W  +++G      + Q+RN 
Sbjct: 210 GMPEKNSVSWNAIIAGYVQCKRMDQARELFEAMPCQNVSSWNTMITGYAQNGDIAQARNF 269

Query: 219 ID-------------------------AFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
            D                         A + F+EM+R+G + ++    +S +  CA  A 
Sbjct: 270 FDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDG-ERLNRSTFTSTLSTCAEIAA 328

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           LELGKQ+HG V+  G ES  ++ NA++ MY KC +I  A  +F  +  K+VVSW ++I G
Sbjct: 329 LELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAG 388

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
            A+HG  +E L L++ M   G+ P++VT VG++ ACSH GLV KG + F SM +DYGIT 
Sbjct: 389 YARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITA 448

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
           + +HYTC++DLL R+G LD+A+NL+K MPFEPD  TW ALL A + H NTE+G + A  +
Sbjct: 449 NSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMI 508

Query: 434 LSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAG 493
             ++P++   Y+LLSN+YA++  W  V ++R  M    VKK PGYS++E     H F  G
Sbjct: 509 FEMEPDNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVG 568

Query: 494 ETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLL 553
           ++ HP +D I+  L ELD +MK+ GYV  T  VLHD+E++EK   L +HSE+LAVA+G+L
Sbjct: 569 DSVHPERDRIYTFLEELDLKMKKEGYVSSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGIL 628

Query: 554 KSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
               G  +RV+KNLRVC DCH  MK IS+I  R I++RD+ R+HHF  G+CSC D+W
Sbjct: 629 AIPAGRPIRVIKNLRVCEDCHNAMKHISKIVGRLIILRDSHRFHHFNGGQCSCGDYW 685



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 110/268 (41%), Gaps = 19/268 (7%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S +   L  CA        K +H +++K GL     + N L+  Y KC  +  A+ + E 
Sbjct: 314 STFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEG 373

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           + +++ VSW +++  Y +    ++ + +F +M     L PD      ++ AC   G    
Sbjct: 374 IEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGIL-PDDVTMVGVLSACSHTGLVDK 432

Query: 124 GKQVHACFVLSPFCDDDVVKSS-----LVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAM 177
           G +    +  S   D  +  +S     ++D+  + G  ++A+ +  ++  + ++ +W A+
Sbjct: 433 GTE----YFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGAL 488

Query: 178 LSAYARSGR----KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233
           L A    G     +K A  IFE  P  N  ++  L +    S    D     + MR  GV
Sbjct: 489 LGASRIHGNTELGEKAAKMIFEMEP-DNSGMYVLLSNLYAASGRWGDVGRMRLRMRDRGV 547

Query: 234 DIVDPLVLSSIVGACANFAVLELGKQIH 261
             V       +      F V   G  +H
Sbjct: 548 KKVPGYSWVEVQNKIHTFTV---GDSVH 572


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 221/540 (40%), Positives = 338/540 (62%), Gaps = 1/540 (0%)

Query: 71  SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC 130
           SW S++    ++    + +  FS+M  L  L+P+   F   +K+C +L     G+Q H  
Sbjct: 43  SWNSVIAELARSGDSVEALRAFSSMRKL-SLKPNRSTFPCAIKSCSALLDLHSGRQAHQQ 101

Query: 131 FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
            ++  F  D  V S+LVDMY+KCG   +AR +FD I  +N VSWT+M++ Y ++     A
Sbjct: 102 ALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRA 161

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
           + +F+    R++  W ++++   Q+    ++   F  M ++G    + + LS+++ ACA+
Sbjct: 162 LRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAH 221

Query: 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
                LGK IH  VI +G ES +F+  +I+DMY KC  +  A+  F RMR K+V SW+++
Sbjct: 222 SGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAM 281

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370
           + G   HG A+E L ++ EM  AGVKPN +TFV ++ ACSH GL+ +G   FK+M  ++ 
Sbjct: 282 VAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFD 341

Query: 371 ITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVA 430
           + P ++HY C++DLL R+G+L EA +LIK M   PD   W ALL AC+ H+N ++G   A
Sbjct: 342 VEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISA 401

Query: 431 NHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIF 490
             L  L P++   Y+LLSN+YA A  W+ V ++R LM    + K PG+S ++     H+F
Sbjct: 402 RKLFELDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVF 461

Query: 491 YAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAY 550
             G+  HP  ++I+E L +L  +++  GYVPD +SVLHD+  +EKE  L  HSE+LAVA+
Sbjct: 462 LVGDREHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAF 521

Query: 551 GLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           G++ +VPGT + ++KNLRVCGDCH  +K IS+I  REIVVRD+ R+HHF+DG CSC D+W
Sbjct: 522 GIMNTVPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 581



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 42/285 (14%)

Query: 43  TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQ 102
           ++I  Y + D    A  + + M +RD +SW SI+  Y Q  +  +++ IF  M+   ++ 
Sbjct: 147 SMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEIN 206

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162
            +    ++++ AC   G+ RLGK +H   +      +  V +S++DMY KCG    AR  
Sbjct: 207 YNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKA 266

Query: 163 FDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
           FD ++ KN  SW+AM++ Y   G  K+A+E+                             
Sbjct: 267 FDRMREKNVKSWSAMVAGYGMHGHAKEALEV----------------------------- 297

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG-----KQIHGLVIALGYESCLFISN 277
             F EM   GV   + +   S++ AC++  +LE G        H   +  G E       
Sbjct: 298 --FYEMNMAGVK-PNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEH----YG 350

Query: 278 AIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAE 321
            +VD+  +   +  A D+   M+ R D V W +++     H   +
Sbjct: 351 CMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVD 395



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 138/289 (47%), Gaps = 41/289 (14%)

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           N+F W ++++ L +S + ++A  +F  MR+  +   +       + +C+    L  G+Q 
Sbjct: 40  NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLK-PNRSTFPCAIKSCSALLDLHSGRQA 98

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG------- 313
           H   +  G+E  LF+S+A+VDMY+KC ++  A+ +F  +  +++VSWTS+I G       
Sbjct: 99  HQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDA 158

Query: 314 ------------------------TAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYA 348
                                    AQ+G + E++ ++  MV  G +  N VT   ++ A
Sbjct: 159 HRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLA 218

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           C+H G    G+ +   +I+  G+  ++   T ++D+  + G ++ A      M  E +  
Sbjct: 219 CAHSGSQRLGKCIHDQVIK-MGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR-EKNVK 276

Query: 409 TWAALLSACKHHRNTEMGTRV--ANHLLSLKPEDPSSYILLSNVYASAA 455
           +W+A+++    H + +    V    ++  +KP    +YI   +V A+ +
Sbjct: 277 SWSAMVAGYGMHGHAKEALEVFYEMNMAGVKP----NYITFVSVLAACS 321



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 14/199 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K +H Q+IK+GL     +  ++ID Y KC  V+ A    + M +++ 
Sbjct: 216 LLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNV 275

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
            SW++++  Y      ++ + +F  M  +  ++P++  F S++ AC   G    G    K
Sbjct: 276 KSWSAMVAGYGMHGHAKEALEVFYEM-NMAGVKPNYITFVSVLAACSHAGLLEEGWHWFK 334

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARS 184
            +   F + P  +       +VD+  + G    A  +   +KL+ + V W A+L A  R 
Sbjct: 335 AMSHEFDVEPGVEH---YGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGA-CRM 390

Query: 185 GRKKDAMEIFEQAPVRNLF 203
            +  D  EI      R LF
Sbjct: 391 HKNVDLGEI----SARKLF 405



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 5/156 (3%)

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
           + +V SW S+I   A+ G + E L  +  M    +KPN  TF   I +CS +  +  GR+
Sbjct: 38  KTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQ 97

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
             +  +  +G  P L   + L+D+ S+ G L +A  L   +    +  +W ++++    +
Sbjct: 98  AHQQAL-IFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR-NIVSWTSMITGYVQN 155

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
            +     RV +    +   D  S+  +  VYA   M
Sbjct: 156 DDAHRALRVFD---GMAERDVISWNSIIAVYAQNGM 188


>gi|296089800|emb|CBI39619.3| unnamed protein product [Vitis vinifera]
          Length = 640

 Score =  466 bits (1200), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/568 (40%), Positives = 359/568 (63%), Gaps = 17/568 (2%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           + Y+  + + +   +   W +++ AY Q+N  +K + ++  M+  + + PD++ +  +V+
Sbjct: 79  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVK-NNVGPDNYTYPLVVQ 137

Query: 114 ACGSLGATRL----GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           AC    A RL    GK++H   +   F  D  V+++L++MYA CG   +AR +FD   + 
Sbjct: 138 AC----AVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVL 193

Query: 170 NSVSWTAMLSAYARSGRKKDAME---IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
           +SVSW ++L+ Y + G     ME   +F +   +++  W+AL+SG  Q+    +A   FI
Sbjct: 194 DSVSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFI 253

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV----DM 282
           EM   G+ + D +V+ S++ ACA+ ++++ GK IHGLVI +G ES + + NA++    DM
Sbjct: 254 EMNANGMRL-DEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDM 312

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           Y KC  +  A ++F  M  K V SW ++I+G A +G  E +L ++ EM + GV PNE+TF
Sbjct: 313 YMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEITF 372

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
           +G++ AC H+GLV +GR  F SMIE +GI P+++HY C++DLL R+G L+EAE LI++MP
Sbjct: 373 MGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESMP 432

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462
             PD  TW ALL ACK H +TEMG RV   L+ L+P+    ++LLSN++AS   W+ V +
Sbjct: 433 MAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVLE 492

Query: 463 VRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPD 522
           VR +M    V K PG S IE     H F AG+ +HP  +++  +L E+   +K  GY PD
Sbjct: 493 VRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAPD 552

Query: 523 TSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISR 582
           T+ V  D++++EKE  LF HSE+LA+A+GLL   P T +R++KNLR+C DCH   K+IS+
Sbjct: 553 TNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLISK 612

Query: 583 ITKREIVVRDATRYHHFKDGKCSCNDFW 610
              REIVVRD  R+H+FK+G CSC D+W
Sbjct: 613 AYAREIVVRDRHRFHYFKEGACSCMDYW 640



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 145/358 (40%), Gaps = 85/358 (23%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ CA   +    K +H  ++K+G      + NTLI+ Y  C  ++ A  L +E P  D 
Sbjct: 136 VQACAVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVLDS 195

Query: 70  VSWASIL----------------------------------TAYNQANLPQKTISIFSTM 95
           VSW SIL                                  + Y Q  + ++ + +F  M
Sbjct: 196 VSWNSILAGYVKKGDMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEM 255

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLV----DMYA 151
            A + ++ D  V  S++ AC  L   + GK +H   +         ++++L+    DMY 
Sbjct: 256 NA-NGMRLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSDMYM 314

Query: 152 KCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSG 211
           KCG   NA  VF+ ++ K   SW A++   A                          V+G
Sbjct: 315 KCGCVENALEVFNGMEEKGVSSWNALIIGLA--------------------------VNG 348

Query: 212 LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK-------QIHGLV 264
           LV+   ++     F EM+  GV I + +    ++GAC +  +++ G+       + HG+ 
Sbjct: 349 LVERSLDM-----FSEMKNNGV-IPNEITFMGVLGACRHMGLVDEGRCHFASMIEKHGIE 402

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAE 321
             + +  C+      VD+  +   +  A+ +   M    DV +W +++    +HG  E
Sbjct: 403 PNVKHYGCM------VDLLGRAGLLNEAEKLIESMPMAPDVATWGALLGACKKHGDTE 454


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/570 (40%), Positives = 349/570 (61%), Gaps = 12/570 (2%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N ++  Y K + +  A  + + MP+RD VSW ++++ Y Q     +   +F      +  
Sbjct: 208 NCMMGGYVKRNRLVDARGIFDRMPERDEVSWNTMISGYAQNGELLEAQRLFE-----ESP 262

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNAR 160
             D F + ++V      G  + G    A  V     + + V  ++++  Y +C   + AR
Sbjct: 263 VRDVFTWTAMVS-----GYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQAR 317

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            +F+++  +N  SW  M++ YA++G    A   F++ P R+   W A+++G  QS    +
Sbjct: 318 ELFEAMPCQNVSSWNTMITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEE 377

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
           A + F+EM+R+G + ++    +S +  CA  A LELGKQ+HG V+  G ES  ++ NA++
Sbjct: 378 ALHLFVEMKRDG-ERLNRSTFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALL 436

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
            MY KC +I  A  +F  +  K+VVSW ++I G A+HG  +E L L++ M   G+ P++V
Sbjct: 437 VMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDV 496

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           T VG++ ACSH GLV KG + F SM +DYGIT + +HYTC++DLL R+G LD+A+NL+K 
Sbjct: 497 TMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKN 556

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           MPFEPD  TW ALL A + H NTE+G + A  +  ++P++   Y+LLSN+YA++  W  V
Sbjct: 557 MPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASGRWGDV 616

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
            ++R  M    VKK PGYS++E     H F  G++ HP +D I+  L ELD +MK+ GYV
Sbjct: 617 GRMRLRMRDRGVKKVPGYSWVEVQNKIHTFTVGDSVHPERDRIYTFLEELDLKMKKEGYV 676

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
             T  VLHD+E++EK   L +HSE+LAVA+G+L    G  +RV+KNLRVC DCH  MK I
Sbjct: 677 SSTKLVLHDVEEEEKVHMLKYHSEKLAVAFGILAIPAGRPIRVIKNLRVCEDCHNAMKHI 736

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           S+I  R I++RD+ R+HHF  G+CSC D+W
Sbjct: 737 SKIVGRLIILRDSHRFHHFNGGQCSCGDYW 766



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 188/381 (49%), Gaps = 24/381 (6%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +I    +   ++ A  L ++MP+RD VSW ++L+ Y Q    ++   IF  M   + +
Sbjct: 115 NVMISGCVRYRNLRAARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPCKNSI 174

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             +  + A+ V+      A RL +      ++S  C        ++  Y K     +AR 
Sbjct: 175 SWNG-MLAAYVQNGRIEDARRLFESKADWELISWNC--------MMGGYVKRNRLVDARG 225

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +FD +  ++ VSW  M+S YA++G   +A  +FE++PVR++F WTA+VSG VQ+    +A
Sbjct: 226 IFDRMPERDEVSWNTMISGYAQNGELLEAQRLFEESPVRDVFTWTAMVSGYVQNGMLDEA 285

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS--NAI 279
              F     +G+   + +  ++I+   A +   +   Q   L  A+    C  +S  N +
Sbjct: 286 RRVF-----DGMPEKNSVSWNAII---AGYVQCKRMDQARELFEAM---PCQNVSSWNTM 334

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           +  YA+  DI  A++ F RM ++D +SW +II G AQ G  EE L L+ EM   G + N 
Sbjct: 335 ITGYAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNR 394

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
            TF   +  C+ +  +  G+++   +++  G+         LL +  + G++D+A  + +
Sbjct: 395 STFTSTLSTCAEIAALELGKQVHGRVVK-AGLESGCYVGNALLVMYCKCGNIDDAYIVFE 453

Query: 400 AMPFEPDEPTWAALLSACKHH 420
            +  E +  +W  +++    H
Sbjct: 454 GIE-EKEVVSWNTMIAGYARH 473



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/245 (22%), Positives = 104/245 (42%), Gaps = 50/245 (20%)

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           V W   ++ + R+G+   A+ +F   P R+   W A++SG + +    D FY   ++  E
Sbjct: 50  VKWNIAITNHMRNGQCDSALRLFNSMPRRSSISWNAMISGCLSN----DKFYLARQL-FE 104

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
            +   D +  + ++  C  +  L                                    A
Sbjct: 105 KMPTRDLVSWNVMISGCVRYRNLR-----------------------------------A 129

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           A+ +F +M  +DVVSW +++ G AQ+G  +E   ++DEM       N +++ G++ A   
Sbjct: 130 ARLLFDQMPERDVVSWNAMLSGYAQNGYVKEAKEIFDEMPC----KNSISWNGMLAAYVQ 185

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
            G +   R+LF+S  +       L  + C++    +   L +A  +   MP E DE +W 
Sbjct: 186 NGRIEDARRLFESKAD-----WELISWNCMMGGYVKRNRLVDARGIFDRMP-ERDEVSWN 239

Query: 412 ALLSA 416
            ++S 
Sbjct: 240 TMISG 244



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 91/205 (44%), Gaps = 15/205 (7%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S +   L  CA        K +H +++K GL     + N L+  Y KC  +  A+ + E 
Sbjct: 395 STFTSTLSTCAEIAALELGKQVHGRVVKAGLESGCYVGNALLVMYCKCGNIDDAYIVFEG 454

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           + +++ VSW +++  Y +    ++ + +F +M     L PD      ++ AC   G    
Sbjct: 455 IEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGIL-PDDVTMVGVLSACSHTGLVDK 513

Query: 124 GKQVHACFVLSPFCDDDVVKSS-----LVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAM 177
           G +    +  S   D  +  +S     ++D+  + G  ++A+ +  ++  + ++ +W A+
Sbjct: 514 GTE----YFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQNLMKNMPFEPDAATWGAL 569

Query: 178 LSAYARSGR----KKDAMEIFEQAP 198
           L A    G     +K A  IFE  P
Sbjct: 570 LGASRIHGNTELGEKAAKMIFEMEP 594


>gi|15221566|ref|NP_177059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75333633|sp|Q9CAA8.1|PP108_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g68930
 gi|12323213|gb|AAG51585.1|AC011665_6 hypothetical protein [Arabidopsis thaliana]
 gi|332196743|gb|AEE34864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 743

 Score =  466 bits (1199), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 252/619 (40%), Positives = 345/619 (55%), Gaps = 65/619 (10%)

Query: 23  KTLHAQIIKLGLHQY----GPL---------------------------PNTLIDAYGKC 51
           K +H Q+IKLG   Y     PL                            N+L+     C
Sbjct: 159 KQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKKVFYGLDDRNTVMYNSLMGGLLAC 218

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
            +++ A  L   M ++D VSWA+++    Q  L ++ I  F  M  +  L+ D + F S+
Sbjct: 219 GMIEDALQLFRGM-EKDSVSWAAMIKGLAQNGLAKEAIECFREM-KVQGLKMDQYPFGSV 276

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           + ACG LGA   GKQ+HAC + + F D   V S+L+DMY KC   + A+ VFD +K KN 
Sbjct: 277 LPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNV 336

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           VS                               WTA+V G  Q+    +A   F++M+R 
Sbjct: 337 VS-------------------------------WTAMVVGYGQTGRAEEAVKIFLDMQRS 365

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
           G+D  D   L   + ACAN + LE G Q HG  I  G    + +SN++V +Y KC DI  
Sbjct: 366 GID-PDHYTLGQAISACANVSSLEEGSQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDD 424

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           +  +F  M  +D VSWT+++   AQ G+A ET+ L+D+MV  G+KP+ VT  G+I ACS 
Sbjct: 425 STRLFNEMNVRDAVSWTAMVSAYAQFGRAVETIQLFDKMVQHGLKPDGVTLTGVISACSR 484

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
            GLV KG++ FK M  +YGI PS+ HY+C++DL SRSG L+EA   I  MPF PD   W 
Sbjct: 485 AGLVEKGQRYFKLMTSEYGIVPSIGHYSCMIDLFSRSGRLEEAMRFINGMPFPPDAIGWT 544

Query: 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
            LLSAC++  N E+G   A  L+ L P  P+ Y LLS++YAS   W  V+++R+ M    
Sbjct: 545 TLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKN 604

Query: 472 VKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDME 531
           VKKEPG S+I++    H F A + S P  D+I+  L EL+ ++   GY PDTS V HD+E
Sbjct: 605 VKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVE 664

Query: 532 QKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVR 591
           +  K + L +HSERLA+A+GL+    G  +RV KNLRVC DCH   K IS +T REI+VR
Sbjct: 665 EAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVR 724

Query: 592 DATRYHHFKDGKCSCNDFW 610
           DA R+H FKDG CSC DFW
Sbjct: 725 DAVRFHRFKDGTCSCGDFW 743



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 196/379 (51%), Gaps = 12/379 (3%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+ AY K  L+       E++P RD V+W  ++  Y+ + L    +  ++TM+     
Sbjct: 76  NNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNTMMRDFSA 135

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
                   +++K   S G   LGKQ+H   +   F    +V S L+ MYA  G  ++A+ 
Sbjct: 136 NLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYANVGCISDAKK 195

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF  +  +N+V + +++      G  +DA+++F +   ++   W A++ GL Q+    +A
Sbjct: 196 VFYGLDDRNTVMYNSLMGGLLACGMIEDALQLF-RGMEKDSVSWAAMIKGLAQNGLAKEA 254

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F EM+ +G+ + D     S++ AC     +  GKQIH  +I   ++  +++ +A++D
Sbjct: 255 IECFREMKVQGLKM-DQYPFGSVLPACGGLGAINEGKQIHACIIRTNFQDHIYVGSALID 313

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  +  AK +F RM++K+VVSWT+++VG  Q G+AEE + ++ +M  +G+ P+  T
Sbjct: 314 MYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGYGQTGRAEEAVKIFLDMQRSGIDPDHYT 373

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY----TCLLDLLSRSGHLDEAENL 397
               I AC++V  + +G     S      IT  L HY      L+ L  + G +D++  L
Sbjct: 374 LGQAISACANVSSLEEG-----SQFHGKAITSGLIHYVTVSNSLVTLYGKCGDIDDSTRL 428

Query: 398 IKAMPFEPDEPTWAALLSA 416
              M    D  +W A++SA
Sbjct: 429 FNEMNVR-DAVSWTAMVSA 446



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 95/382 (24%), Positives = 167/382 (43%), Gaps = 40/382 (10%)

Query: 108 FASLVKACGSLGA---TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFD 164
           ++  +K C  LGA   +R  K +H   + +    +  + +++V  YA       AR VFD
Sbjct: 6   YSVQIKQCIGLGARNQSRYVKMIHGNIIRALPYPETFLYNNIVHAYALMKSSTYARRVFD 65

Query: 165 SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS 224
            I   N  SW  +L AY+++G   +    FE+ P R+   W  L+ G   S     A  +
Sbjct: 66  RIPQPNLFSWNNLLLAYSKAGLISEMESTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKA 125

Query: 225 FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284
           +  M R+    +  + L +++   ++   + LGKQIHG VI LG+ES L + + ++ MYA
Sbjct: 126 YNTMMRDFSANLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLYMYA 185

Query: 285 KCSDIIAAKDIF------------------------------GRMRRKDVVSWTSIIVGT 314
               I  AK +F                               R   KD VSW ++I G 
Sbjct: 186 NVGCISDAKKVFYGLDDRNTVMYNSLMGGLLACGMIEDALQLFRGMEKDSVSWAAMIKGL 245

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
           AQ+G A+E +  + EM   G+K ++  F  ++ AC  +G + +G+++   +I        
Sbjct: 246 AQNGLAKEAIECFREMKVQGLKMDQYPFGSVLPACGGLGAINEGKQIHACIIRT-NFQDH 304

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           +   + L+D+  +   L  A+ +   M  + +  +W A++         E   ++    L
Sbjct: 305 IYVGSALIDMYCKCKCLHYAKTVFDRMK-QKNVVSWTAMVVGYGQTGRAEEAVKI---FL 360

Query: 435 SLKPE--DPSSYILLSNVYASA 454
            ++    DP  Y L   + A A
Sbjct: 361 DMQRSGIDPDHYTLGQAISACA 382


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 250/654 (38%), Positives = 378/654 (57%), Gaps = 70/654 (10%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA ++K G  +  P+ N+LI  Y +  +++ A  + ++M  RD V+W S++  Y +   
Sbjct: 216 VHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQ 275

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
             +   IF+ M  L  ++P H  FAS++K+C SL    L K +    + S F  D +V +
Sbjct: 276 DLEVFEIFNKM-QLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVIT 334

Query: 145 SLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARSGRKKDAMEIFEQA------ 197
           +L+   +KC   ++A ++F  ++  KN VSWTAM+S   ++G    A+ +F Q       
Sbjct: 335 ALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVK 394

Query: 198 --------------PV---------------RNLFLWTALVSGLVQSRNEIDA--FYSFI 226
                         PV               R+  + TAL+   V+  N IDA   +  I
Sbjct: 395 PNHFTYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEII 454

Query: 227 EMR-----------------------------REGVDIVDPLVLSSIVGACAN-FAVLEL 256
           E +                             +EG+   +    SS++ ACA+  A  E 
Sbjct: 455 EAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIK-PNEFTFSSVINACASPTAAAEQ 513

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           GKQ H   I +   + L +S+A+V MYAK  +I +A ++F R + +D+VSW S+I G +Q
Sbjct: 514 GKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQ 573

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           HGQA++ L ++DEM    +  + VTF+G+I AC+H GLV KG+K F SMI D+ I P+++
Sbjct: 574 HGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVEKGQKYFNSMINDHHINPTMK 633

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
           HY+C++DL SR+G L++A  +I  MPF P    W  LL A + HRN E+G   A  L+SL
Sbjct: 634 HYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGAARVHRNVELGELAAEKLISL 693

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETS 496
           +PED ++Y+LLSN+YA+A  WQ  + VRKLM   +VKKEPGYS+IE    ++ F AG+ +
Sbjct: 694 QPEDSAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKEPGYSWIEVKNKTYSFLAGDLT 753

Query: 497 HPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSV 556
           HPL ++I+  L+EL   +K  GY PDT +V HD+E ++KE  L  HSERLA+A+GL+ + 
Sbjct: 754 HPLSNQIYSKLSELSIRLKDAGYQPDTKNVFHDIEDEQKETILSHHSERLAIAFGLIATP 813

Query: 557 PGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           P   +++VKNLRVCGDCH   K++S + +R IVVRD+ R+HHFKDG CSC D+W
Sbjct: 814 PEIPIQIVKNLRVCGDCHNFTKLVSLVEQRYIVVRDSNRFHHFKDGLCSCGDYW 867



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 216/494 (43%), Gaps = 76/494 (15%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
             +CA        + +H Q +K GL  +  +  +L+D Y K + V     + +EM +R+ 
Sbjct: 100 FNICAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNV 159

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S+L  Y+   L      +F  M   + + P+ +  ++++ A  + G   +G QVHA
Sbjct: 160 VSWTSLLAGYSWNGLYGYVWELFCQM-QYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHA 218

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V   F +   V +SL+ +Y++ G+  +AR VFD +++++ V+W +M++ Y R+G+  +
Sbjct: 219 MVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLE 278

Query: 190 AMEIFEQ--------------------APVRNLFL-----WTALVSGLVQSR-------- 216
             EIF +                    A +R L L       AL SG    +        
Sbjct: 279 VFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMV 338

Query: 217 -----NEIDAFYSFIEMRREGVDIVD-PLVLSSIVGACANFAVLELGKQ----------- 259
                 E+D   S   +  EG ++V    ++S  +    N   + L  Q           
Sbjct: 339 ALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHF 398

Query: 260 ----------------IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
                           +H  VI   YE    +  A++D Y K  + I A  +F  +  KD
Sbjct: 399 TYSAILTVHYPVFVSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKD 458

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           +++W++++ G AQ G+ EE   L+ +++  G+KPNE TF  +I AC+      +  K F 
Sbjct: 459 LMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFH 518

Query: 364 SMIEDYGITPSLQHYTC----LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           +    Y I   L +  C    L+ + ++ G++D A  + K    E D  +W +++S    
Sbjct: 519 A----YAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQK-ERDLVSWNSMISGYSQ 573

Query: 420 HRNTEMGTRVANHL 433
           H   +    V + +
Sbjct: 574 HGQAKKALEVFDEM 587



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 176/366 (48%), Gaps = 42/366 (11%)

Query: 57  AHHLLEEMPQRDHV--SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA 114
           AH+L +++P R         +L +Y++    ++ +++F ++L    LQPD    + +   
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLH-SSLQPDESTLSCVFNI 102

Query: 115 CGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSW 174
           C      +LG+QVH   V     D   V +SLVDMY K    N+ R              
Sbjct: 103 CAGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGR-------------- 148

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
                             +F++   RN+  WT+L++G   +      +  F +M+ EGV 
Sbjct: 149 -----------------RVFDEMGERNVVSWTSLLAGYSWNGLYGYVWELFCQMQYEGV- 190

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
           + +   +S+++ A  N  V+ +G Q+H +V+  G+E  + + N+++ +Y++   +  A+D
Sbjct: 191 LPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARD 250

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS---H 351
           +F +M  +D V+W S+I G  ++GQ  E   ++++M  AGVKP  +TF  +I +C+    
Sbjct: 251 VFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRE 310

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
           + LV    KL +      G T      T L+  LS+   +D+A +L   M    +  +W 
Sbjct: 311 LALV----KLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWT 366

Query: 412 ALLSAC 417
           A++S C
Sbjct: 367 AMISGC 372



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/182 (31%), Positives = 100/182 (54%), Gaps = 2/182 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           V  +HA++IK    +   +   L+DAY K      A  + E +  +D ++W+++L  Y Q
Sbjct: 412 VSEMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQ 471

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGS-LGATRLGKQVHACFVLSPFCDDD 140
               ++   +F  ++  + ++P+ F F+S++ AC S   A   GKQ HA  +     +  
Sbjct: 472 TGETEEAAKLFHQLIK-EGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNAL 530

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V S+LV MYAK G  ++A  VF   K ++ VSW +M+S Y++ G+ K A+E+F++   R
Sbjct: 531 CVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKR 590

Query: 201 NL 202
           N+
Sbjct: 591 NM 592


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 240/595 (40%), Positives = 357/595 (60%), Gaps = 8/595 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQ--YAHHLLEEMPQRDHVSWASILTAY 79
           VK +HA I + GL Q   +   L+    K D+    Y   + +++   +   W +++  Y
Sbjct: 55  VKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGY 114

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL-SPFCD 138
                  +++ ++++M     + P  F F +L+KAC +     LG+QVH   +L   F  
Sbjct: 115 ALQGPFMESVLLYNSMRR-QGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGS 173

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  V ++L+DMY KCG       VFD +  ++ +SWT+++ AYA+ G  + A E+F+  P
Sbjct: 174 DLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLP 233

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
           ++++  WTA+V+G  Q+    +A   F  M+  GV   D + L  ++ ACA     +   
Sbjct: 234 MKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVK-TDEVTLVGVISACAQLGAAKYAN 292

Query: 259 QIHGLVIALGY--ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
            +  +    G+   S + + +A++DMYAKC  +  A  +F RM  ++V S++S+IVG A 
Sbjct: 293 WVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAM 352

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           HG A   + L+DEM+   +KPN VTF+G++ ACSH G+V +G++LF  M E +G+ PS  
Sbjct: 353 HGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPSED 412

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
           HY C++DLL R+G L+EA NL+K MP  P    W ALL AC+ H N +M    A+HL  L
Sbjct: 413 HYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLFEL 472

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG-SHIFYAGET 495
           +P    +YILLSN+YASA  W  VSKVRKLM    +KK PG S++E  KG  H F+AG+ 
Sbjct: 473 EPNGIGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGIIHEFFAGDM 532

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKS 555
           SHP   EI + L +L   +K  GY P+ SSV +D+  +EK+R L  HSE+LA+A+GLL +
Sbjct: 533 SHPKSREIKQALEDLLDRLKYLGYQPNLSSVAYDISDEEKKRLLMSHSEKLALAFGLLTT 592

Query: 556 VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             G  +R+VKNLR+C DCH VM   S+IT REIVVRD  R+HHF+DG+CSC +FW
Sbjct: 593 NAGCTIRIVKNLRICEDCHSVMCGASQITGREIVVRDNMRFHHFRDGRCSCGNFW 647


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 232/635 (36%), Positives = 364/635 (57%), Gaps = 35/635 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQ-------------- 55
           L  CA  +     + +H+ +IKLGL    P+ N+++  YGKC   +              
Sbjct: 170 LSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSE 229

Query: 56  ---------YAHH--------LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                    Y H         + E M +R  VSW +I+  YNQ  L    +  FS ML  
Sbjct: 230 SSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTA 289

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
             ++PD F   S++ AC +L   ++GKQ+H+  + +       + ++L+  YAK G    
Sbjct: 290 SSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVET 349

Query: 159 ARAVFDSIKLK--NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
           AR + D   +   N +S+TA+L  Y + G  K A E+F+    R++  WTA++ G  Q+ 
Sbjct: 350 ARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNG 409

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
              +A   F  M R G +  +   L++++ ACA+ A L  GKQIH   I    E  + +S
Sbjct: 410 QNDEAMELFRSMIRSGPE-PNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVS 468

Query: 277 NAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
           NAI+ +YA+   +  A+ +F ++  RK+ V+WTS+IV  AQHG  E+ + L++EM+  GV
Sbjct: 469 NAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGV 528

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
           KP+ VT++G+  AC+H G + KG++ ++ M+ ++GI P + HY C++DLL+R+G L EA 
Sbjct: 529 KPDRVTYIGVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAH 588

Query: 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
             I+ MP  PD   W +LL+AC+  +N ++    A  LLS+ P++  +Y  L+NVY++  
Sbjct: 589 EFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACG 648

Query: 456 MWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK 515
            W   +++ KL     VKKE G+S+       H+F A +  HP +D I +   E+  E+K
Sbjct: 649 RWNDAARIWKLRKDKAVKKETGFSWTHVQSKVHVFGADDVLHPQRDAICKKAAEMWEEIK 708

Query: 516 RRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHI 575
           + G+VPD +SVLHD++ + KE  L  HSE+LA+A+GL+ +   T LR++KNLRVC DCH 
Sbjct: 709 KAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHT 768

Query: 576 VMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +K IS++  REI+VRDATR+HHF+DG CSC D+W
Sbjct: 769 AIKFISKVVDREIIVRDATRFHHFRDGYCSCKDYW 803



 Score =  189 bits (479), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 209/439 (47%), Gaps = 38/439 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+L+  Y K   +  A  +  +MP+RD VSW  ++   N+A      +  F  M+  + L
Sbjct: 101 NSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVG-EGL 159

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P  F+  +++ +C +  A  +G++VH+  +         V +S++ MY KCG    ARA
Sbjct: 160 APSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARA 219

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF+ +K+++  SW AM+S Y   GR   A+ +FE    R++  W A+++G  Q+  +  A
Sbjct: 220 VFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMA 279

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M        D   ++S++ ACAN  +L++GKQ+H  ++  G      I NA++ 
Sbjct: 280 LKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQIMNALIS 339

Query: 282 MYAKC---------------------------------SDIIAAKDIFGRMRRKDVVSWT 308
            YAK                                   D   A+++F  M  +DV++WT
Sbjct: 340 TYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWT 399

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++IVG  Q+GQ +E + L+  M+ +G +PN  T   ++ AC+ +  +G G+++    I  
Sbjct: 400 AMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRS 459

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
                S+     ++ + +RSG +  A  +   + +  +  TW +++ A   H   E    
Sbjct: 460 LQ-EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIV 518

Query: 429 VANHLL--SLKPEDPSSYI 445
           +   +L   +KP D  +YI
Sbjct: 519 LFEEMLRVGVKP-DRVTYI 536



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 178/350 (50%), Gaps = 43/350 (12%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP----NNA 159
           DHF  A L++   +      G+ +HA  V +       + ++L+  YA+ G+     + A
Sbjct: 26  DHF--ARLLQLSQTAVNPSAGRAIHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEA 83

Query: 160 RAVFDSIKL--KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
           R +FD I    +N+ +W ++LS YA+SGR  DA  +F Q P R+   WT +V GL ++  
Sbjct: 84  RRLFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGR 143

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             DA  +F++M  EG+      +L++++ +CA      +G+++H  VI LG  SC+ ++N
Sbjct: 144 FWDAVKTFLDMVGEGL-APSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVAN 202

Query: 278 AIVDMYAKCSDIIAAKDIFGRMR-------------------------------RKDVVS 306
           +++ MY KC D   A+ +F RM+                                + +VS
Sbjct: 203 SVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVS 262

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSA-GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           W +II G  Q+G  +  L  +  M++A  ++P+E T   ++ AC+++ ++  G+++  S 
Sbjct: 263 WNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQM-HSY 321

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI-KAMPFEPDEPTWAALL 414
           I   G+  S Q    L+   ++SG ++ A  ++ KA+  + +  ++ ALL
Sbjct: 322 ILRTGMPYSSQIMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALL 371



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 76/153 (49%), Gaps = 2/153 (1%)

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
           F  N+++ MYAK   +  A+ +F +M  +D VSWT ++VG  + G+  + +  + +MV  
Sbjct: 98  FTWNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGE 157

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
           G+ P++     ++ +C+     G GRK+  S +   G++  +     +L +  + G  + 
Sbjct: 158 GLAPSQFMLTNVLSSCAATEARGIGRKV-HSFVIKLGLSSCVPVANSVLYMYGKCGDAET 216

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
           A  + + M     E +W A++S   H    ++ 
Sbjct: 217 ARAVFERMKVR-SESSWNAMVSLYTHQGRMDLA 248


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 237/569 (41%), Positives = 338/569 (59%), Gaps = 33/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT+I    +C +V+ A  L E M  RD ++W +++T + Q  L  + + IF  M     +
Sbjct: 210 NTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRM-RFQGI 268

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             D + F S++ ACG+L A   GKQ+HA  + + + D+  V S+LVDMY+KC        
Sbjct: 269 AIDQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALVDMYSKC-------- 320

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
              SIKL  +V                     F +   +N+  WTAL+ G  Q+    +A
Sbjct: 321 --RSIKLAETV---------------------FRRMTCKNIISWTALIVGYGQNGCSEEA 357

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F EM+R+G+D  D   L S++ +CAN A LE G Q H L +  G    + +SNA+V 
Sbjct: 358 VRVFSEMQRDGID-PDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVT 416

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           +Y KC  I  A  +F  M   D VSWT+++ G AQ G+A+ET+ L+++M++ GVKP+ VT
Sbjct: 417 LYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEKMLAKGVKPDGVT 476

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+G++ ACS  G V KGR  F SM +D+GI P   HYTC++DL SRSG L EAE  IK M
Sbjct: 477 FIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLKEAEEFIKQM 536

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P  PD   W  LLSAC+   + E+G   A +LL + P++P+SY+LL +++A+   W  V+
Sbjct: 537 PMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLEIDPQNPASYVLLCSMHAAKGQWNEVA 596

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           ++R+ M   +VKKEPG S+I++    HIF A + SHP    I+E L  L+++M   GY P
Sbjct: 597 QLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPCSKGIYEKLEWLNSKMLEEGYKP 656

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           D SSVLHD+   +K   +  HSE+LA+A+GL+       +R+VKNLRVC DCH   K IS
Sbjct: 657 DVSSVLHDVADTDKVHMVSHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFIS 716

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +IT R+I+VRDA R+H F DG CSC DFW
Sbjct: 717 KITGRDILVRDAVRFHKFSDGVCSCGDFW 745



 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 196/380 (51%), Gaps = 12/380 (3%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDK- 100
           N L+       L+     L   M QRD VS+ +++  ++      + + ++  +L  D  
Sbjct: 76  NALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGSHAQAVRVYLALLQADSS 135

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           ++P     +++V A  +LG   LGKQ H   +   F  +  V S LVDMYAK  L  +A+
Sbjct: 136 VRPSRITMSTMVMAASALGDRALGKQFHCQILRLGFGANAFVGSPLVDMYAKMSLVGDAK 195

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
             FD +  KN V +  M++   R    ++A  +FE    R+   WT +V+G  Q+  E +
Sbjct: 196 RAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESE 255

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
           A   F  MR +G+ I D     SI+ AC   + LE GKQIH  +I   Y+  +F+ +A+V
Sbjct: 256 ALEIFRRMRFQGIAI-DQYTFGSILTACGALSALEQGKQIHAYIIRTRYDDNVFVGSALV 314

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           DMY+KC  I  A+ +F RM  K+++SWT++IVG  Q+G +EE + ++ EM   G+ P++ 
Sbjct: 315 DMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDY 374

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY----TCLLDLLSRSGHLDEAEN 396
           T   +I +C+++  + +G     +      +   L HY      L+ L  + G +++A  
Sbjct: 375 TLGSVISSCANLASLEEG-----AQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHR 429

Query: 397 LIKAMPFEPDEPTWAALLSA 416
           L   M F  D+ +W AL+S 
Sbjct: 430 LFDEMSFH-DQVSWTALVSG 448



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 137/307 (44%), Gaps = 47/307 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HA II+        + + L+D Y KC  ++ A  +   M  ++ +SW +++  Y Q 
Sbjct: 292 KQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQN 351

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ + +FS M   D + PD +   S++ +C +L +   G Q H   ++S       V
Sbjct: 352 GCSEEAVRVFSEM-QRDGIDPDDYTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITV 410

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LV +Y KCG   +A  +FD +   + VSWTA++S YA+ GR K+ +++FE+      
Sbjct: 411 SNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYAQFGRAKETIDLFEK------ 464

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI-- 260
                                    M  +GV   D +    ++ AC+    +E G+    
Sbjct: 465 -------------------------MLAKGVK-PDGVTFIGVLSACSRAGFVEKGRSYFH 498

Query: 261 -----HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGT 314
                HG+V    + +C+      +D+Y++   +  A++   +M    D + W +++   
Sbjct: 499 SMQKDHGIVPIDDHYTCM------IDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSAC 552

Query: 315 AQHGQAE 321
              G  E
Sbjct: 553 RLRGDME 559



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 151/343 (44%), Gaps = 35/343 (10%)

Query: 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLW 205
           L+  Y K G    AR VFD++   N  ++ A+LS  A +    D   +F     R++  +
Sbjct: 47  LLTAYGKAGRHARARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSY 106

Query: 206 TALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLSSIVGACANFAVLELGKQIHGLV 264
            A+++G     +   A   ++ + +    +    + +S++V A +      LGKQ H  +
Sbjct: 107 NAVIAGFSGGGSHAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGDRALGKQFHCQI 166

Query: 265 IALGYESCLFISNAIVDMYAK-------------------------------CSDIIAAK 293
           + LG+ +  F+ + +VDMYAK                               C  +  A+
Sbjct: 167 LRLGFGANAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEAR 226

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
            +F  M  +D ++WT+++ G  Q+G   E L ++  M   G+  ++ TF  ++ AC  + 
Sbjct: 227 RLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALS 286

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
            + +G+++   +I       ++   + L+D+ S+   +  AE + + M  + +  +W AL
Sbjct: 287 ALEQGKQIHAYIIRTR-YDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCK-NIISWTAL 344

Query: 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           +     +  +E   RV +  +     DP  Y L S + + A +
Sbjct: 345 IVGYGQNGCSEEAVRVFSE-MQRDGIDPDDYTLGSVISSCANL 386


>gi|222637368|gb|EEE67500.1| hypothetical protein OsJ_24934 [Oryza sativa Japonica Group]
          Length = 830

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 244/620 (39%), Positives = 349/620 (56%), Gaps = 40/620 (6%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQY---AHHLLEEMPQRDHVSWASI------ 75
           LH  ++K G      + N LI  Y KCD  +    A  +L+EMP +D ++W ++      
Sbjct: 185 LHCSVLKSGAAAVLSVSNALIALYMKCDTPEASWDARKVLDEMPDKDDLTWTTMVVGYVR 244

Query: 76  -------------------------LTAYNQANLPQKTISIFSTMLALDKLQPDHFVFAS 110
                                    ++ Y Q+ +      +F  M++ +K+  D F F S
Sbjct: 245 RGDVNAARSVFEEVDGKFDVVWNAMISGYVQSGMCADAFELFRRMVS-EKVPLDEFTFTS 303

Query: 111 LVKACGSLGATRLGKQVHACFV-LSP-FCDDDV--VKSSLVDMYAKCGLPNNARAVFDSI 166
           ++ AC + G    GK VH   + L P F  +    V ++LV +Y+K G    A+ +FD++
Sbjct: 304 VLSACANAGFFVHGKSVHGQIIRLQPNFVPEAALPVNNALVTLYSKGGKIVIAKRIFDTM 363

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
            LK+ VSW  +LS Y  SG    A+E+F+  P +N   W  +VSG V      DA   F 
Sbjct: 364 NLKDVVSWNTILSGYIDSGCLDKAVEVFKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFN 423

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           +MR E V   D    +  + AC     L+ G+Q+H  ++  G+E+     NA++ MYAKC
Sbjct: 424 QMRAEDVKPCD-YTYAGAIAACGELGALKHGRQLHAHLVQCGFEASNSAGNALLTMYAKC 482

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             +  A+ +F  M   D VSW ++I    QHG   E L L+D+MV+ G+ P+ ++F+ ++
Sbjct: 483 GAVNDARLVFLVMPNLDSVSWNAMISALGQHGHGREALELFDQMVAEGIDPDRISFLTIL 542

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            AC+H GLV +G   F+SM  D+GI+P   HY  L+DLL RSG + EA +LIK MPFEP 
Sbjct: 543 TACNHAGLVDEGFHYFESMKRDFGISPGEDHYARLIDLLGRSGRIGEARDLIKTMPFEPT 602

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKL 466
              W A+LS C+ + + E G   A+ L  + P+   +YILLSN Y++A  W   ++VRKL
Sbjct: 603 PSIWEAILSGCRTNGDMEFGAYAADQLFRMIPQHDGTYILLSNTYSAAGRWVDAARVRKL 662

Query: 467 MSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSV 526
           M    VKKEPG S+IE G   H+F  G+T HP   E+++ L  + A M++ GYVPDT  V
Sbjct: 663 MRDRGVKKEPGCSWIEVGSKIHVFLVGDTKHPEAQEVYQFLEVIGARMRKLGYVPDTKFV 722

Query: 527 LHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKR 586
           LHDME  EKE  LF HSE+LAV +GLLK  PG  + V+KNLR+CGDCH  M  +S+   R
Sbjct: 723 LHDMEPHEKEYILFAHSEKLAVGFGLLKLPPGATVTVLKNLRICGDCHTAMMFMSKAVGR 782

Query: 587 EIVVRDATRYHHFKDGKCSC 606
           EIVVRD  R+HHFKDG+CSC
Sbjct: 783 EIVVRDVRRFHHFKDGECSC 802



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 125/425 (29%), Positives = 203/425 (47%), Gaps = 46/425 (10%)

Query: 39  PLPNT-LIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTAYNQANLPQKTISIFSTM 95
           P P T L+ A      ++ A    + +P  +RD V   ++++A+ +A+L    +S+F  +
Sbjct: 92  PSPATSLVAAQAAAGRLRDAAAFFDAVPPARRDTVLHNAMMSAFARASLAAPAVSVFHAL 151

Query: 96  LALDKLQPDHFVFASLVKACGSLG--ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC 153
           L    L+PD + F +L+ A G +   A     Q+H   + S       V ++L+ +Y KC
Sbjct: 152 LGSGSLRPDDYSFTALISAVGQMHNLAAPHCTQLHCSVLKSGAAAVLSVSNALIALYMKC 211

Query: 154 GLPN---NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVS 210
             P    +AR V D +  K+ ++WT M+  Y R G    A  +FE+   +   +W A++S
Sbjct: 212 DTPEASWDARKVLDEMPDKDDLTWTTMVVGYVRRGDVNAARSVFEEVDGKFDVVWNAMIS 271

Query: 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG-- 268
           G VQS    DAF  F  M  E V + D    +S++ ACAN      GK +HG +I L   
Sbjct: 272 GYVQSGMCADAFELFRRMVSEKVPL-DEFTFTSVLSACANAGFFVHGKSVHGQIIRLQPN 330

Query: 269 --YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI---------------- 310
              E+ L ++NA+V +Y+K   I+ AK IF  M  KDVVSW +I                
Sbjct: 331 FVPEAALPVNNALVTLYSKGGKIVIAKRIFDTMNLKDVVSWNTILSGYIDSGCLDKAVEV 390

Query: 311 ---------------IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
                          + G    G +E+ L L+++M +  VKP + T+ G I AC  +G +
Sbjct: 391 FKVMPYKNDLSWMVMVSGYVHGGLSEDALKLFNQMRAEDVKPCDYTYAGAIAACGELGAL 450

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
             GR+L   +++  G   S      LL + ++ G +++A  +   MP   D  +W A++S
Sbjct: 451 KHGRQLHAHLVQ-CGFEASNSAGNALLTMYAKCGAVNDARLVFLVMP-NLDSVSWNAMIS 508

Query: 416 ACKHH 420
           A   H
Sbjct: 509 ALGQH 513



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 78/168 (46%), Gaps = 9/168 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHA +++ G        N L+  Y KC  V  A  +   MP  D VSW ++++A  Q 
Sbjct: 454 RQLHAHLVQCGFEASNSAGNALLTMYAKCGAVNDARLVFLVMPNLDSVSWNAMISALGQH 513

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----KQVHACFVLSPFCD 138
              ++ + +F  M+A + + PD   F +++ AC   G    G    + +   F +SP  D
Sbjct: 514 GHGREALELFDQMVA-EGIDPDRISFLTILTACNHAGLVDEGFHYFESMKRDFGISPGED 572

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSG 185
                + L+D+  + G    AR +  ++  + + S W A+LS    +G
Sbjct: 573 H---YARLIDLLGRSGRIGEARDLIKTMPFEPTPSIWEAILSGCRTNG 617


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 238/607 (39%), Positives = 359/607 (59%), Gaps = 8/607 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CAR         +H+ IIK G      + N LI  Y     +  A  L +E   RD 
Sbjct: 118 LNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDL 177

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS+ +++  Y + N P+  + +F  M     + PD F F +L   C  L    +GKQ+HA
Sbjct: 178 VSYNTMIKGYAEVNQPESALCLFGEMQN-SGILPDEFTFVALFSVCSVLNEPNVGKQIHA 236

Query: 130 CFV--LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARSGR 186
                L     + ++KS++VDMYAKCGL N A  VF ++   K++ +W++M+  YAR G 
Sbjct: 237 QVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGE 296

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
              A ++F     R++  WTA++SG  Q+    +A   F EM   G+   D + L +++ 
Sbjct: 297 INVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEMEALGIK-PDEVTLVAVLS 355

Query: 247 ACANFAVLELGKQIHGLVIALG-YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KD 303
           ACA     +LGK+++   I  G +     ++ A++DMYAKC  I +A +IF R+ +  K 
Sbjct: 356 ACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKT 415

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
              + S+I G AQHG  E  + ++ E++S G+KP+EVTFVG++ AC H GL+ +G+KLF+
Sbjct: 416 GFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFE 475

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
           SM   YGI P ++HY C++DLL R G L+EA +L++ MPFE +   W ALLSAC+ H N 
Sbjct: 476 SMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNV 535

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           ++G      LL ++ +  + Y+LLSN+ A A  W+   +VRK+M    ++K PG+SYIE 
Sbjct: 536 KIGEIAGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIEL 595

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
           G   H F A + SHP   EI  +L ++   +K  GYVP+T+ V+ D++++EKE  + +HS
Sbjct: 596 GGAIHRFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHS 655

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           E+LA+A+GL+   P   +R+VKNLR+C DCH   K++S I  REI VRD  R+HHF++G 
Sbjct: 656 EKLALAFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGS 715

Query: 604 CSCNDFW 610
           CSC DFW
Sbjct: 716 CSCMDFW 722



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/463 (24%), Positives = 219/463 (47%), Gaps = 52/463 (11%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAY---GKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           +HAQ I  GLH      + LI  +   G  D + ++  L  ++   +   W +++  Y++
Sbjct: 28  IHAQTIVNGLHHQIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRGYSR 87

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
           ++ P++ I ++ +M+A     P++F F  L+ +C  L +   G +VH+  +   F  D  
Sbjct: 88  SDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLF 147

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V+++L+ +Y+  G  N AR +FD   +++ VS+  M+  YA   + + A+ +F +     
Sbjct: 148 VRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSG 207

Query: 202 L----FLWTALVS--GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
           +    F + AL S   ++   N     ++ +      +D  + L+ S+IV   A   ++ 
Sbjct: 208 ILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSID-SNILLKSAIVDMYAKCGLIN 266

Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
           + +++      +G        +++V  YA+C +I  A+ +F  M  +DV+SWT++I G +
Sbjct: 267 IAERVFS---TMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYS 323

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
           Q GQ  E L L+ EM + G+KP+EVT V ++ AC+ +G    G++L+   IE+     + 
Sbjct: 324 QAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNT 383

Query: 376 QHYTCLLDLLSRSGHLDEA--------ENLIKAMPF------------------------ 403
                ++D+ ++ G +D A        +N+     F                        
Sbjct: 384 ILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELI 443

Query: 404 ----EPDEPTWAALLSACKHHRNTEMGTRVANHLLS---LKPE 439
               +PDE T+  +L AC H    E G ++   + +   +KP+
Sbjct: 444 STGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQ 486



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/331 (23%), Positives = 166/331 (50%), Gaps = 14/331 (4%)

Query: 152 KCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME----IFEQAPVRNLFLWTA 207
           K GL  +A+ + + +      S + ++S ++  G  KD ++    +F Q    NLF+W  
Sbjct: 23  KQGLQIHAQTIVNGLH-HQIFSISRLISFFSLLG-SKDGLDHSRLLFSQIDCPNLFMWNT 80

Query: 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267
           ++ G  +S N  +A   ++ M  +G+   +      ++ +CA  + LE G ++H  +I  
Sbjct: 81  MIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKH 140

Query: 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327
           G+ES LF+ NA++ +Y+   ++  A+ +F     +D+VS+ ++I G A+  Q E  L L+
Sbjct: 141 GFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLF 200

Query: 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY-GITPSLQHYTCLLDLLS 386
            EM ++G+ P+E TFV L   CS +     G+++   + ++   I  ++   + ++D+ +
Sbjct: 201 GEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYA 260

Query: 387 RSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT--RVANHLLSLKPEDPSSY 444
           + G ++ AE +   M        W++++  C + R  E+    ++ NH   +   D  S+
Sbjct: 261 KCGLINIAERVFSTMGTSKSAAAWSSMV--CGYARCGEINVARKLFNH---MHERDVISW 315

Query: 445 ILLSNVYASAAMWQHVSKVRKLMSVMEVKKE 475
             + + Y+ A       ++ K M  + +K +
Sbjct: 316 TAMISGYSQAGQCSEALELFKEMEALGIKPD 346


>gi|413946157|gb|AFW78806.1| hypothetical protein ZEAMMB73_634908 [Zea mays]
          Length = 1145

 Score =  463 bits (1191), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/565 (40%), Positives = 343/565 (60%), Gaps = 3/565 (0%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +I  Y + ++V  A  L   MP R+ +SWA ++  Y +    ++ +      L    +
Sbjct: 356 NAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRSEQALVSLQA-LHRKGM 414

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P      S   AC ++ A   GKQVH+  V +    +  V ++L+ +Y K     + R 
Sbjct: 415 LPSLSSLTSSFFACSNIEALETGKQVHSLAVKAGCQFNSYVCNALITLYGKYRSIGSVRQ 474

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +FD + +K++VS+ + +SA  ++    +A ++F   P  ++  WT ++S   Q+    +A
Sbjct: 475 IFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPSPDVVSWTTIISACAQADQGNEA 534

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M  E  ++ +P +L+ ++G   N    +LG+QIH + I LG +S L ++NA+V 
Sbjct: 535 VEIFRSMLHE-RELPNPPILTILLGLSGNLGAPQLGQQIHTIAIKLGMDSGLVVANALVS 593

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KCS   + K +F  M  +D+ +W +II G AQHG   E + +Y  MVSAGV PNEVT
Sbjct: 594 MYFKCSSADSLK-VFDSMEERDIFTWNTIITGYAQHGLGREAIRMYQLMVSAGVLPNEVT 652

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           FVGL++ACSH GLV +G + FKSM  DYG+TP L+HY C++DLL R+G +  AE+ I  M
Sbjct: 653 FVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLEHYACMVDLLGRAGDVQGAEHFIYDM 712

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P EPD   W+ALL ACK H+N E+G R A  L S++P +  +Y++LSN+Y+S  MW  V+
Sbjct: 713 PIEPDSVIWSALLGACKIHKNVEIGRRAAEKLFSIEPSNAGNYVMLSNIYSSQGMWDEVA 772

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           KVRKLM    V K+PG S+++     H F  G+  H     I+  L EL   +K  GYVP
Sbjct: 773 KVRKLMKERGVNKDPGCSWMQIKNKMHSFVTGDEEHEQIQNIYATLWELYTLLKATGYVP 832

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           DT  VLHD+++++KE  L +HSE+LAVAYGLL +  G  ++++KNLR+CGDCH  +K +S
Sbjct: 833 DTDFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVS 892

Query: 582 RITKREIVVRDATRYHHFKDGKCSC 606
            +TKREI VRD  R+HHF++G CSC
Sbjct: 893 SVTKREIDVRDGNRFHHFRNGSCSC 917



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 185/413 (44%), Gaps = 73/413 (17%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT++  Y    L++ A +L E MP+R+ VSW  +++ Y       +   +F TML  + +
Sbjct: 161 NTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDMFRTMLC-EGM 219

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK-CGLPNNAR 160
            P+     S++ A   LG   + + +H     + F  D VV +++++ Y K   + ++A 
Sbjct: 220 TPEQPNLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYTKDVNMLDSAV 279

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR-------------------- 200
             F+ +  +N  +W+ +++A +++GR  DA  ++++ P++                    
Sbjct: 280 KFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLTGLARYGRIDD 339

Query: 201 -----------NLFLWTALVSGLVQS---------------RNEI--------------- 219
                      N+  W A+++G +Q+               RN I               
Sbjct: 340 AKILFDQIHEPNVVSWNAMITGYMQNEMVDEAEDLFNRMPFRNTISWAGMIAGYARNGRS 399

Query: 220 -DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
             A  S   + R+G+      + SS   AC+N   LE GKQ+H L +  G +   ++ NA
Sbjct: 400 EQALVSLQALHRKGMLPSLSSLTSSFF-ACSNIEALETGKQVHSLAVKAGCQFNSYVCNA 458

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++ +Y K   I + + IF RM  KD VS+ S +    Q+   +E   +++ M S    P+
Sbjct: 459 LITLYGKYRSIGSVRQIFDRMTVKDTVSYNSFMSALVQNNLFDEARDVFNNMPS----PD 514

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
            V++  +I AC+      +  ++F+SM+ +      L +   L  LL  SG+L
Sbjct: 515 VVSWTTIISACAQADQGNEAVEIFRSMLHER----ELPNPPILTILLGLSGNL 563



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/381 (23%), Positives = 174/381 (45%), Gaps = 21/381 (5%)

Query: 45  IDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPD 104
           I   G+   +  A  + + MP RD ++W S++ AY    +P    S+ +  ++   L+  
Sbjct: 40  IRELGRLGRLHEAREVFDSMPFRDIIAWNSMIFAYCNNGMPDAGRSL-ADAISGGNLRTG 98

Query: 105 HFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFD 164
             + +   +A    G  R  ++V     +     + V  +++V  Y + G    AR +FD
Sbjct: 99  TILLSGYARA----GRVRDARRVFDGMGVR----NTVAWNAMVTCYVQNGDITLARKLFD 150

Query: 165 SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS 224
           ++  ++  SW  ML+ Y  S   ++A  +FE+ P RN   WT ++SG V       A+  
Sbjct: 151 AMPSRDVSSWNTMLTGYCHSQLMEEARNLFERMPERNGVSWTVMISGYVLIEQHGRAWDM 210

Query: 225 FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284
           F  M  EG+    P  L S++ A  +     + + IH LV   G+E  + +  AI++ Y 
Sbjct: 211 FRTMLCEGMTPEQP-NLVSVLSAVRHLGKPGILESIHVLVHKTGFERDVVVGTAILNGYT 269

Query: 285 KCSDII-AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           K  +++ +A   F  M  ++  +W++II   +Q G+ ++  A+Y       V        
Sbjct: 270 KDVNMLDSAVKFFEGMAARNEYTWSTIIAALSQAGRIDDAFAVYQRDPLKSVPSRTSMLT 329

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
           GL    +  G +   + LF  + E     P++  +  ++    ++  +DEAE+L   MPF
Sbjct: 330 GL----ARYGRIDDAKILFDQIHE-----PNVVSWNAMITGYMQNEMVDEAEDLFNRMPF 380

Query: 404 EPDEPTWAALLSACKHHRNTE 424
             +  +WA +++    +  +E
Sbjct: 381 R-NTISWAGMIAGYARNGRSE 400



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 77/163 (47%), Gaps = 10/163 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H   IKLG+     + N L+  Y KC     +  + + M +RD  +W +I+T Y Q 
Sbjct: 570 QQIHTIAIKLGMDSGLVVANALVSMYFKCSSAD-SLKVFDSMEERDIFTWNTIITGYAQH 628

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----KQVHACFVLSPFCD 138
            L ++ I ++  M++   L P+   F  L+ AC   G    G    K + + + L+P  +
Sbjct: 629 GLGREAIRMYQLMVSAGVL-PNEVTFVGLLHACSHSGLVDEGHQFFKSMSSDYGLTPLLE 687

Query: 139 DDVVKSSLVDMYAKCGLPNNARA-VFDSIKLKNSVSWTAMLSA 180
                + +VD+  + G    A   ++D     +SV W+A+L A
Sbjct: 688 H---YACMVDLLGRAGDVQGAEHFIYDMPIEPDSVIWSALLGA 727


>gi|449470104|ref|XP_004152758.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
 gi|449504088|ref|XP_004162249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Cucumis sativus]
          Length = 797

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 237/632 (37%), Positives = 356/632 (56%), Gaps = 50/632 (7%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKC---------DLVQYAHHLLEEMPQRDHVSWASI 75
           +H  ++K G+  +  + N L+  Y KC          L+  A  L +EMP+R+   W ++
Sbjct: 170 MHGTVVKFGIEIFPAVLNALLSVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTL 229

Query: 76  LTAYNQAN-------------------------------LPQKTISIFSTMLALDKLQPD 104
           +T Y +                                 L +  +++F  M  L  +Q D
Sbjct: 230 ITGYVRNGDLTGAREILDTMTEQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLG-VQVD 288

Query: 105 HFVFASLVKACGSLGATRLGKQVHACFV---LSPFCDDDV---VKSSLVDMYAKCGLPNN 158
              + S++ AC   G   LGKQVHA  +   L+P  D D    V ++L+ +Y K G  + 
Sbjct: 289 ESTYTSVISACADGGFFLLGKQVHAYILKNELNP--DRDFLLSVGNTLITLYWKYGKVDG 346

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           AR +F  + +K+ ++W  +LS Y  +GR ++A   F Q P +NL  WT ++SGL Q+   
Sbjct: 347 ARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFG 406

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
             A   F +M+ +G +  D    +  + AC+    LE G+Q+H  ++ LG++S L + NA
Sbjct: 407 EQALKLFNQMKLDGYEPND-YAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNA 465

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++ MYA+C  + AA+ +F  M   D VSW S+I    QHG   + + LY++M+  G+ P+
Sbjct: 466 MITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQMLKEGILPD 525

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
             TF+ ++ ACSH GLV +G + F SM+E+YGI P   HY  ++DL  R+G   +A+N+I
Sbjct: 526 RRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGEDHYARMIDLFCRAGKFSDAKNVI 585

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
            +MPFE   P W ALL+ C+ H N ++G   A  L  L P+   +Y+LLSN+YAS   W 
Sbjct: 586 DSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEKLFKLIPQHDGTYVLLSNMYASLGRWN 645

Query: 459 HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
            V++ RKLM    VKKEP  S+ E     H+F   +T HP    I+  L +L+ EMK+ G
Sbjct: 646 DVARTRKLMRDRGVKKEPACSWTEVENKVHVFLVDDTVHPEVLSIYNYLEKLNLEMKKIG 705

Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
           Y+PDT  VLHDME + KE  L  HSE+LAVA+GL+K   G  +RV KNLR+CGDCH  +K
Sbjct: 706 YIPDTKYVLHDMESEHKEYALSTHSEKLAVAFGLMKLPQGATVRVFKNLRICGDCHNAIK 765

Query: 579 MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +S++  REIVVRD  R+HHFK+G+CSC ++W
Sbjct: 766 FMSKVVGREIVVRDGKRFHHFKNGECSCRNYW 797



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 129/497 (25%), Positives = 212/497 (42%), Gaps = 84/497 (16%)

Query: 4   SHYLHRLRVCARHQIAL--TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
           + Y  +L +C    ++     +T+H  +I  G    G + N LID Y K     YA  L 
Sbjct: 12  NRYFAQLNLCCPQNLSSYSLARTVHGHVIASGFKLRGHIVNRLIDIYWKSSDFVYARKLF 71

Query: 62  EEMPQ---------------------------------RDHVSWASILTAYNQANLPQKT 88
           +E+PQ                                 RD V + +++T Y+  N     
Sbjct: 72  DEIPQPDVIARTTLITAYSALGNLKMAREIFNETPLDMRDTVFYNAMITGYSHMNDGHSA 131

Query: 89  ISIFSTMLALDKLQPDHFVFASLVKACGSLG-ATRLGKQVHACFVLSPFCDDDVVKSSLV 147
           I +F  M   +  QPD F FAS++ A   +    R   Q+H   V         V ++L+
Sbjct: 132 IELFRAMRWAN-FQPDDFTFASVLSASTLIFYDERQCGQMHGTVVKFGIEIFPAVLNALL 190

Query: 148 DMYAKCGLPN---------NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
            +Y KC             +AR +FD +  +N   WT +++ Y R+G    A EI +   
Sbjct: 191 SVYVKCASSPLVSSSSLMASARKLFDEMPKRNEFIWTTLITGYVRNGDLTGAREILDTMT 250

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            +    W A++SG +      DA   F +MR  GV  VD    +S++ ACA+     LGK
Sbjct: 251 EQPGIAWNAMISGYLHHGLFEDALTLFRKMRLLGVQ-VDESTYTSVISACADGGFFLLGK 309

Query: 259 QIHGLVIA----LGYESCLFISNAIVDMYAK---------------CSDIIA-------- 291
           Q+H  ++        +  L + N ++ +Y K                 DII         
Sbjct: 310 QVHAYILKNELNPDRDFLLSVGNTLITLYWKYGKVDGARKIFYEMPVKDIITWNTLLSGY 369

Query: 292 --------AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
                   AK  F +M  K++++WT +I G AQ+G  E+ L L+++M   G +PN+  F 
Sbjct: 370 VNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFGEQALKLFNQMKLDGYEPNDYAFA 429

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
           G I ACS +G +  GR+L   ++   G   +L     ++ + +R G ++ A  +   MPF
Sbjct: 430 GAITACSVLGALENGRQLHAQIVH-LGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPF 488

Query: 404 EPDEPTWAALLSACKHH 420
             D  +W ++++A   H
Sbjct: 489 -VDPVSWNSMIAALGQH 504



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/357 (22%), Positives = 150/357 (42%), Gaps = 74/357 (20%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP-------LPNTLIDAYGKCDLVQY 56
           S Y   +  CA     L  K +HA I+K   ++  P       + NTLI  Y K   V  
Sbjct: 290 STYTSVISACADGGFFLLGKQVHAYILK---NELNPDRDFLLSVGNTLITLYWKYGKVDG 346

Query: 57  AHHLLEEMPQRDHVSWASILTAYNQ-----------ANLPQKTISIFSTMLA-------- 97
           A  +  EMP +D ++W ++L+ Y             A +P+K +  ++ M++        
Sbjct: 347 ARKIFYEMPVKDIITWNTLLSGYVNAGRMEEAKSFFAQMPEKNLLTWTVMISGLAQNGFG 406

Query: 98  -----------LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSL 146
                      LD  +P+ + FA  + AC  LGA   G+Q+HA  V         V +++
Sbjct: 407 EQALKLFNQMKLDGYEPNDYAFAGAITACSVLGALENGRQLHAQIVHLGHDSTLSVGNAM 466

Query: 147 VDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWT 206
           + MYA+CG+   AR +F ++   + VSW +M++A  + G    A+E++EQ          
Sbjct: 467 ITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQHGHGVKAIELYEQ---------- 516

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ-IHGLVI 265
                                M +EG+ + D     +++ AC++  ++E G +  + ++ 
Sbjct: 517 ---------------------MLKEGI-LPDRRTFLTVLSACSHAGLVEEGNRYFNSMLE 554

Query: 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS-WTSIIVGTAQHGQAE 321
             G          ++D++ +      AK++   M  +     W +++ G   HG  +
Sbjct: 555 NYGIAPGEDHYARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMD 611



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 9/179 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHAQI+ LG      + N +I  Y +C +V+ A  +   MP  D VSW S++ A  Q 
Sbjct: 445 RQLHAQIVHLGHDSTLSVGNAMITMYARCGIVEAARTMFLTMPFVDPVSWNSMIAALGQH 504

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV----LSPFCD 138
               K I ++  ML  + + PD   F +++ AC   G    G +     +    ++P  D
Sbjct: 505 GHGVKAIELYEQMLK-EGILPDRRTFLTVLSACSHAGLVEEGNRYFNSMLENYGIAPGED 563

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGRKKDAMEIFEQ 196
                + ++D++ + G  ++A+ V DS+  +     W A+L+     G     +E  E+
Sbjct: 564 H---YARMIDLFCRAGKFSDAKNVIDSMPFEARAPIWEALLAGCRTHGNMDLGIEAAEK 619


>gi|297821407|ref|XP_002878586.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324425|gb|EFH54845.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 786

 Score =  462 bits (1190), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/628 (38%), Positives = 370/628 (58%), Gaps = 43/628 (6%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC----------------DLVQY----AHHL 60
           T K +H+ I+KLGL     + N+L++ Y KC                D+  +    A H+
Sbjct: 164 TGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHM 223

Query: 61  -----------LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFA 109
                       E+M +RD V+W S+++ YNQ     + + +FS ML    L PD F  A
Sbjct: 224 QVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRALDMFSKMLRDSMLSPDRFTLA 283

Query: 110 SLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           S++ AC +L    +G+Q+H+  V + F    +V ++L+ MY++CG    AR + +    K
Sbjct: 284 SVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTK 343

Query: 170 N--SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR---NEIDAFYS 224
           +     +TA+L  Y + G   +A  IF+    R++  WTA++ G  Q       I+ F S
Sbjct: 344 DLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWTAMIVGYEQHGLYGEAINLFRS 403

Query: 225 FI-EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            + E +R      +   L++++   ++ A L  GKQIHG  +  G    + +SNA++ MY
Sbjct: 404 MVGEEQRP-----NSYTLAAMLSVASSLASLGHGKQIHGSAVKSGEIYSVSVSNALITMY 458

Query: 284 AKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           AK   I +A   F  +R  +D VSWTS+I+  AQHG AEE L L++ M+  G++P+ +T+
Sbjct: 459 AKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITY 518

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
           VG+  AC+H GLV +GR+ F  M +   I P+L HY C++DL  R+G L EA+  I+ MP
Sbjct: 519 VGVFSACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMP 578

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462
            EPD  TW +LLSAC+ ++N ++G   A  LL L+PE+  +Y  L+N+Y++   W+  +K
Sbjct: 579 IEPDVVTWGSLLSACRVYKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAK 638

Query: 463 VRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPD 522
           +RK M    VKKE G+S+IE     H F   +  HP K+EI+  + ++  E+K+ GYVPD
Sbjct: 639 IRKSMKDGRVKKEQGFSWIEVKHKVHAFGVEDGIHPQKNEIYITMKKIWDEIKKMGYVPD 698

Query: 523 TSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISR 582
           T+SVLHD+E++ KE+ L  HSE+LA+A+GL+ +   T LR++KNLRVC DCH  +K IS+
Sbjct: 699 TASVLHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISK 758

Query: 583 ITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +  REI+VRD TR+HHFKDG CSC D+W
Sbjct: 759 LVGREIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 225/465 (48%), Gaps = 41/465 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT++ AY K   +  +    + +PQRD VSW +++  Y       K I I   M+  + +
Sbjct: 84  NTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKNIGQYHKAIRIMGEMMR-EGI 142

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +P  F   +++ +  +      GK+VH+  V      +  V +SL++MYAKCG P  A+ 
Sbjct: 143 EPSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKV 202

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VFD + +K+  SW AM++ + + G+   AM  FEQ   R++  W +++SG  Q   ++ A
Sbjct: 203 VFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGYNQRGYDLRA 262

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F +M R+ +   D   L+S++ ACAN   L +G+QIH  ++  G++    + NA++ 
Sbjct: 263 LDMFSKMLRDSMLSPDRFTLASVLSACANLEKLCIGEQIHSHIVTTGFDISGIVLNALIS 322

Query: 282 MYAKC---------------------------------SDIIAAKDIFGRMRRKDVVSWT 308
           MY++C                                  D+  AK+IF  ++ +DVV+WT
Sbjct: 323 MYSRCGGVETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNEAKNIFDSLKDRDVVAWT 382

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++IVG  QHG   E + L+  MV    +PN  T   ++   S +  +G G+++  S ++ 
Sbjct: 383 AMIVGYEQHGLYGEAINLFRSMVGEEQRPNSYTLAAMLSVASSLASLGHGKQIHGSAVKS 442

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
            G   S+     L+ + +++G +  A      +  E D  +W +++ A   H + E    
Sbjct: 443 -GEIYSVSVSNALITMYAKAGSITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALE 501

Query: 429 VANHLL--SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
           +   +L   L+P+    +I    V+++      V++ R+   +M+
Sbjct: 502 LFETMLMEGLRPD----HITYVGVFSACTHAGLVNQGRQYFDMMK 542



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 161/341 (47%), Gaps = 45/341 (13%)

Query: 103 PDHFVFASLVKACGSLGATRLGKQ--------VHACFVLSPFCDDDVVKSSLVDMYAKCG 154
           P     ++L++ C +L    + K         VH   + S       + ++L+++Y+K G
Sbjct: 4   PVPLSLSTLLELCTNLLQKSVNKSNGRFTAQLVHCRVIKSGLVFSVYLMNNLMNVYSKTG 63

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
              +AR +FD + L+ + SW  +LSAYA+ G    + E F++ P R+   WT ++ G   
Sbjct: 64  YALHARKLFDEMPLRTAFSWNTVLSAYAKRGDMDSSCEFFDRLPQRDSVSWTTMIVGYKN 123

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF 274
                 A     EM REG++      L++++ + A    LE GK++H  ++ LG    + 
Sbjct: 124 IGQYHKAIRIMGEMMREGIE-PSQFTLTNVLASVAATRCLETGKKVHSFIVKLGLRGNVS 182

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
           +SN++++MYAKC D + AK +F RM  KD+ SW ++I    Q GQ +  +A +++M    
Sbjct: 183 VSNSLLNMYAKCGDPMMAKVVFDRMVVKDISSWNAMIALHMQVGQMDLAMAQFEQMAERD 242

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
           +    VT+  +I   +  G   +   +F  M+ D               +LS        
Sbjct: 243 I----VTWNSMISGYNQRGYDLRALDMFSKMLRD--------------SMLS-------- 276

Query: 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
                     PD  T A++LSAC +     +G ++ +H+++
Sbjct: 277 ----------PDRFTLASVLSACANLEKLCIGEQIHSHIVT 307


>gi|449437256|ref|XP_004136408.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 632

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/542 (41%), Positives = 340/542 (62%), Gaps = 3/542 (0%)

Query: 71  SWASILTAYNQANLPQKTISIFSTMLAL-DKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           ++ ++L A++Q N    TIS F+  L L +   PD + F S++KAC  L     G++VH 
Sbjct: 92  AYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVH- 150

Query: 130 CFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           CFV    C+ ++ V++SLVD+Y K G    A+ +FD + +++ VSW  ++S Y  SG   
Sbjct: 151 CFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVD 210

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            A  +F+    +NL  W+ ++SG  ++    DA   F +M+ EG    + + L S++ AC
Sbjct: 211 KARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGLAPNDVTLVSVLSAC 270

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A+   L+LGK IH  +     E  LF+ NA+ DMYAKC  ++ AK +F  M  +DV+SW+
Sbjct: 271 AHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKGVFHEMHERDVISWS 330

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            II+G A +G A E    + EM+  G++PN+++F+GL+ AC+H GLV KG + F  M + 
Sbjct: 331 IIIMGLAMYGYANEAFNFFAEMIEDGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQV 390

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YGITP ++HY C++DLLSR+G LD+AE+LI +MP +P+   W ALL  C+ +++ E G R
Sbjct: 391 YGITPKIEHYGCVVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAERGER 450

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
           V   +L L      S + L+NVYAS       +  R  M   +  K PG S+IE     +
Sbjct: 451 VVWRILELDSNHSGSLVYLANVYASMGRLDDAASCRLRMRDNKSMKTPGCSWIEINNSVY 510

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F+ G++SHP    I+ ++ EL  +MK  GY P T  V+H+++++EKE  L  HSE+LA+
Sbjct: 511 EFFMGDSSHPQSLRIYSMIRELKWKMKVAGYKPKTDLVIHNIDEEEKEDALSTHSEKLAL 570

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+GL+ +  GT +R+VKNLRVC DCH  +K+IS+I +REIVVRD +R+HHFKDGKCSCND
Sbjct: 571 AFGLINTSEGTTIRIVKNLRVCNDCHDAIKIISKIVEREIVVRDRSRFHHFKDGKCSCND 630

Query: 609 FW 610
           +W
Sbjct: 631 YW 632



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 123/288 (42%), Gaps = 46/288 (15%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NTLI  Y    +V  A  + + M +++ VSW+++++ Y +       I +F  M     L
Sbjct: 197 NTLISGYCFSGMVDKARMVFDGMMEKNLVSWSTMISGYARNEKYADAIELFRQMQHEGGL 256

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P+     S++ AC  LGA  LGK +H     +       + ++L DMYAKCG    A+ 
Sbjct: 257 APNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKG 316

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF  +  ++ +SW+ ++   A  G                                  +A
Sbjct: 317 VFHEMHERDVISWSIIIMGLAMYGYAN-------------------------------EA 345

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG-------KQIHGLVIALGYESCLF 274
           F  F EM  +G++  D +    ++ AC +  +++ G        Q++G+   + +  C  
Sbjct: 346 FNFFAEMIEDGLEPND-ISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGC-- 402

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAE 321
               +VD+ ++   +  A+ +   M  + +V+ W +++ G   +  AE
Sbjct: 403 ----VVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAE 446


>gi|15227144|ref|NP_179798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206010|sp|Q9SHZ8.1|PP168_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g22070
 gi|4587589|gb|AAD25817.1| hypothetical protein [Arabidopsis thaliana]
 gi|330252165|gb|AEC07259.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 786

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/624 (38%), Positives = 369/624 (59%), Gaps = 35/624 (5%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC----------------DLVQY----AHHL 60
           T K +H+ I+KLGL     + N+L++ Y KC                D+  +    A H+
Sbjct: 164 TGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVRDISSWNAMIALHM 223

Query: 61  -----------LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFA 109
                       E+M +RD V+W S+++ +NQ     + + IFS ML    L PD F  A
Sbjct: 224 QVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKMLRDSLLSPDRFTLA 283

Query: 110 SLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           S++ AC +L    +GKQ+H+  V + F    +V ++L+ MY++CG    AR + +    K
Sbjct: 284 SVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGVETARRLIEQRGTK 343

Query: 170 NSV--SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
           +     +TA+L  Y + G    A  IF     R++  WTA++ G  Q  +  +A   F  
Sbjct: 344 DLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRS 403

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M   G    +   L++++   ++ A L  GKQIHG  +  G    + +SNA++ MYAK  
Sbjct: 404 MVGGG-QRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAG 462

Query: 288 DIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
           +I +A   F  +R  +D VSWTS+I+  AQHG AEE L L++ M+  G++P+ +T+VG+ 
Sbjct: 463 NITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVF 522

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            AC+H GLV +GR+ F  M +   I P+L HY C++DL  R+G L EA+  I+ MP EPD
Sbjct: 523 SACTHAGLVNQGRQYFDMMKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPD 582

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKL 466
             TW +LLSAC+ H+N ++G   A  LL L+PE+  +Y  L+N+Y++   W+  +K+RK 
Sbjct: 583 VVTWGSLLSACRVHKNIDLGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKS 642

Query: 467 MSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSV 526
           M    VKKE G+S+IE     H+F   + +HP K+EI+  + ++  E+K+ GYVPDT+SV
Sbjct: 643 MKDGRVKKEQGFSWIEVKHKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASV 702

Query: 527 LHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKR 586
           LHD+E++ KE+ L  HSE+LA+A+GL+ +   T LR++KNLRVC DCH  +K IS++  R
Sbjct: 703 LHDLEEEVKEQILRHHSEKLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGR 762

Query: 587 EIVVRDATRYHHFKDGKCSCNDFW 610
           EI+VRD TR+HHFKDG CSC D+W
Sbjct: 763 EIIVRDTTRFHHFKDGFCSCRDYW 786



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 132/517 (25%), Positives = 243/517 (47%), Gaps = 70/517 (13%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
            T + +H ++IK GL     L N L++ Y K     +A  L +EMP R   SW ++L+AY
Sbjct: 31  FTAQLVHCRVIKSGLMFSVYLMNNLMNVYSKTGYALHARKLFDEMPLRTAFSWNTVLSAY 90

Query: 80  NQA-----------NLPQKTISIFSTM-------------------LALDKLQPDHFVFA 109
           ++             LPQ+    ++TM                   +  + ++P  F   
Sbjct: 91  SKRGDMDSTCEFFDQLPQRDSVSWTTMIVGYKNIGQYHKAIRVMGDMVKEGIEPTQFTLT 150

Query: 110 SLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           +++ +  +      GK+VH+  V      +  V +SL++MYAKCG P  A+ VFD + ++
Sbjct: 151 NVLASVAATRCMETGKKVHSFIVKLGLRGNVSVSNSLLNMYAKCGDPMMAKFVFDRMVVR 210

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
           +  SW AM++ + + G+   AM  FEQ   R++  W +++SG  Q   ++ A   F +M 
Sbjct: 211 DISSWNAMIALHMQVGQMDLAMAQFEQMAERDIVTWNSMISGFNQRGYDLRALDIFSKML 270

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC--- 286
           R+ +   D   L+S++ ACAN   L +GKQIH  ++  G++    + NA++ MY++C   
Sbjct: 271 RDSLLSPDRFTLASVLSACANLEKLCIGKQIHSHIVTTGFDISGIVLNALISMYSRCGGV 330

Query: 287 ------------------------------SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
                                          D+  AK+IF  ++ +DVV+WT++IVG  Q
Sbjct: 331 ETARRLIEQRGTKDLKIEGFTALLDGYIKLGDMNQAKNIFVSLKDRDVVAWTAMIVGYEQ 390

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           HG   E + L+  MV  G +PN  T   ++   S +  +  G+++  S ++  G   S+ 
Sbjct: 391 HGSYGEAINLFRSMVGGGQRPNSYTLAAMLSVASSLASLSHGKQIHGSAVKS-GEIYSVS 449

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL-- 434
               L+ + +++G++  A      +  E D  +W +++ A   H + E    +   +L  
Sbjct: 450 VSNALITMYAKAGNITSASRAFDLIRCERDTVSWTSMIIALAQHGHAEEALELFETMLME 509

Query: 435 SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
            L+P+    +I    V+++      V++ R+   +M+
Sbjct: 510 GLRPD----HITYVGVFSACTHAGLVNQGRQYFDMMK 542


>gi|225458036|ref|XP_002280360.1| PREDICTED: pentatricopeptide repeat-containing protein At1g25360
           [Vitis vinifera]
          Length = 799

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 232/572 (40%), Positives = 341/572 (59%), Gaps = 6/572 (1%)

Query: 43  TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQ 102
           T+I  Y +   +  A   L+ M ++  V+W ++++ Y       + + +F  M  L  +Q
Sbjct: 230 TMIAGYVRNGELDAARQFLDGMTEKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLG-IQ 288

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLS---PFCDDDV-VKSSLVDMYAKCGLPNN 158
            D F + S++ AC + G    GKQVHA  + +   P  D  + V ++L  +Y KCG  + 
Sbjct: 289 WDEFTYTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDE 348

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           AR VF+ + +K+ VSW A+LS Y  +GR  +A   FE+ P RNL  WT ++SGL Q+   
Sbjct: 349 ARQVFNQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFG 408

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            ++   F  M+ EG +  D     +I+ ACA  A L  G+Q+H  ++ LG++S L   NA
Sbjct: 409 EESLKLFNRMKSEGFEPCDYAFAGAII-ACAWLAALMHGRQLHAQLVRLGFDSSLSAGNA 467

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++ MYAKC  + AA  +F  M   D VSW ++I    QHG   + L L++ M+   + P+
Sbjct: 468 LITMYAKCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFELMLKEDILPD 527

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
            +TF+ ++  CSH GLV +G + FKSM   YGI P   HY  ++DLL R+G   EA+++I
Sbjct: 528 RITFLTVLSTCSHAGLVEEGHRYFKSMSGLYGICPGEDHYARMIDLLCRAGKFSEAKDMI 587

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
           + MP EP  P W ALL+ C+ H N ++G + A  L  L P+   +Y+LLSN+YA+   W 
Sbjct: 588 ETMPVEPGPPIWEALLAGCRIHGNMDLGIQAAERLFELMPQHDGTYVLLSNMYATVGRWD 647

Query: 459 HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
            V+KVRKLM    VKKEPG S+IE     H+F   +  HP    ++  L EL  +M++ G
Sbjct: 648 DVAKVRKLMRDKGVKKEPGCSWIEVENKVHVFLVDDIVHPEVQAVYNYLEELGLKMRKLG 707

Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
           Y+PDT  VLHDME ++KE  L  HSE+LAV +GLLK   G  +RV KNLR+CGDCH   K
Sbjct: 708 YIPDTKFVLHDMESEQKEYVLSTHSEKLAVGFGLLKLPLGATVRVFKNLRICGDCHNAFK 767

Query: 579 MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +S++ +REIVVRD  R+HHFK+G+CSC ++W
Sbjct: 768 FMSKVVEREIVVRDGKRFHHFKNGECSCGNYW 799



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 126/497 (25%), Positives = 219/497 (44%), Gaps = 84/497 (16%)

Query: 4   SHYLHRLRVCARHQ-IALTV-KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
           + Y  +L+ C  H  ++ ++ +T+HA +I  G    G + N LID Y K   +  AHHL 
Sbjct: 14  NQYAAQLQQCCPHNPMSYSIARTVHAHMIASGFKPRGYILNRLIDVYCKSSDLVSAHHLF 73

Query: 62  EEMPQ---------------------------------RDHVSWASILTAYNQANLPQKT 88
           +E+ Q                                 RD V + +++T Y+  N     
Sbjct: 74  DEIRQPDIVARTTLIAAHSSAGNSNLAREIFFATPLGIRDTVCYNAMITGYSHNNDGFGA 133

Query: 89  ISIFSTMLALDKLQPDHFVFASLVKACGSL-GATRLGKQVHACFVLSPFCDDDVVKSSLV 147
           I +F  +L  +  +PD+F F S++ A   +    +  +Q+H   V S       V ++L+
Sbjct: 134 IELFRDLLR-NGFRPDNFTFTSVLGALALIVEDEKQCQQIHCAVVKSGSGFVTSVLNALL 192

Query: 148 DMYAKCGLPNN---------ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
            ++ KC              AR +FD +  ++ +SWT M++ Y R+G    A +  +   
Sbjct: 193 SVFVKCASSPLVSSSSLMAAARKLFDEMTERDELSWTTMIAGYVRNGELDAARQFLDGMT 252

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            + +  W A++SG V     ++A   F +M   G+   D    +S++ ACAN      GK
Sbjct: 253 EKLVVAWNAMISGYVHHGFFLEALEMFRKMYLLGIQW-DEFTYTSVLSACANAGFFLHGK 311

Query: 259 QIHGLVIAL----GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI---- 310
           Q+H  ++        +  L ++NA+  +Y KC  +  A+ +F +M  KD+VSW +I    
Sbjct: 312 QVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVFNQMPVKDLVSWNAILSGY 371

Query: 311 ---------------------------IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
                                      I G AQ+G  EE+L L++ M S G +P +  F 
Sbjct: 372 VNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLKLFNRMKSEGFEPCDYAFA 431

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
           G I AC+ +  +  GR+L   ++   G   SL     L+ + ++ G ++ A  L   MP+
Sbjct: 432 GAIIACAWLAALMHGRQLHAQLVR-LGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPY 490

Query: 404 EPDEPTWAALLSACKHH 420
             D  +W A+++A   H
Sbjct: 491 -LDSVSWNAMIAALGQH 506



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 34/224 (15%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKL----GLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
           Y   L  CA     L  K +HA I++      L     + N L   Y KC  V  A  + 
Sbjct: 294 YTSVLSACANAGFFLHGKQVHAYILRTEPRPSLDFSLSVNNALATLYWKCGKVDEARQVF 353

Query: 62  EEMPQRDHVSWASILTAYNQAN-----------LPQKTISIFSTMLA------------- 97
            +MP +D VSW +IL+ Y  A            +P++ +  ++ M++             
Sbjct: 354 NQMPVKDLVSWNAILSGYVNAGRIDEAKSFFEEMPERNLLTWTVMISGLAQNGFGEESLK 413

Query: 98  ------LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYA 151
                  +  +P  + FA  + AC  L A   G+Q+HA  V   F       ++L+ MYA
Sbjct: 414 LFNRMKSEGFEPCDYAFAGAIIACAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYA 473

Query: 152 KCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
           KCG+   A  +F ++   +SVSW AM++A  + G    A+E+FE
Sbjct: 474 KCGVVEAAHCLFLTMPYLDSVSWNAMIAALGQHGHGAQALELFE 517



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 85/192 (44%), Gaps = 7/192 (3%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA     +  + LHAQ+++LG        N LI  Y KC +V+ AH L   MP  D VSW
Sbjct: 437 CAWLAALMHGRQLHAQLVRLGFDSSLSAGNALITMYAKCGVVEAAHCLFLTMPYLDSVSW 496

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            +++ A  Q     + + +F  ML  D L PD   F +++  C   G    G +      
Sbjct: 497 NAMIAALGQHGHGAQALELFELMLKEDIL-PDRITFLTVLSTCSHAGLVEEGHRYFKSMS 555

Query: 133 -LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGRK--- 187
            L   C  +   + ++D+  + G  + A+ + +++ ++     W A+L+     G     
Sbjct: 556 GLYGICPGEDHYARMIDLLCRAGKFSEAKDMIETMPVEPGPPIWEALLAGCRIHGNMDLG 615

Query: 188 -KDAMEIFEQAP 198
            + A  +FE  P
Sbjct: 616 IQAAERLFELMP 627


>gi|225466163|ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 624

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 233/591 (39%), Positives = 350/591 (59%), Gaps = 4/591 (0%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLID--AYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           +K  H+QII+LGL         +I   A  K   + YA  + +++P  D   + +I   Y
Sbjct: 36  LKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAYIYNTIFRGY 95

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            +  L +  I ++S ML    + P+ F +  L++AC    A   GKQ+HA  +   F  D
Sbjct: 96  LRWQLARNCIFMYSRMLH-KSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGAD 154

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
               ++L+ MY        AR VFD++  ++ VSWT++++ Y++ G    A E+FE  P 
Sbjct: 155 GFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAREVFELMPE 214

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
           RN   W A+++  VQS    +AF  F  MR E V ++D  V +S++ AC     LE GK 
Sbjct: 215 RNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENV-VLDKFVAASMLSACTGLGALEQGKW 273

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           IHG +   G E    ++  ++DMY KC  +  A ++F  + +K + SW  +I G A HG+
Sbjct: 274 IHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGK 333

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
            E  + L+ EM    V P+ +TFV ++ AC+H GLV +G+  F+ M E  G+ P ++H+ 
Sbjct: 334 GEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFG 393

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++DLL R+G L+EA  LI  MP  PD     AL+ AC+ H NTE+G ++   ++ L+P 
Sbjct: 394 CMVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPH 453

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           +   Y+LL+N+YASA  W+ V+KVRKLM+   VKK PG+S IE   G   F AG  +HP 
Sbjct: 454 NSGRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQ 513

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
             EI+  L E+   ++  GYVPDT  VLHD++++EKE  L++HSE+LA+A+GLLK+ PG 
Sbjct: 514 AKEIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGE 573

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            LR+ KNLR+C DCH   K+IS++  REI++RD  R+HHF+ G CSC D+W
Sbjct: 574 TLRISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 624



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 103/401 (25%), Positives = 160/401 (39%), Gaps = 81/401 (20%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +R C         K +HA ++K G    G   N LI  Y     ++ A  + + MPQRD 
Sbjct: 127 IRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDV 186

Query: 70  VSWASILTAYNQANLPQKTISIFSTM------------------------------LALD 99
           VSW S++T Y+Q     K   +F  M                              + L+
Sbjct: 187 VSWTSLITGYSQWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLE 246

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            +  D FV AS++ AC  LGA   GK +H     S    D  + ++++DMY KCG    A
Sbjct: 247 NVVLDKFVAASMLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKA 306

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ------APVRNLF---LWTALVS 210
             VF+ +  K   SW  M+   A  G+ + A+E+F++      AP    F   L     S
Sbjct: 307 SEVFNELPQKGISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHS 366

Query: 211 GLVQSRNEIDAFYSFIEMRREG-------VDIV--------------------DPLVLSS 243
           GLV+       + + +   + G       VD++                    D  VL +
Sbjct: 367 GLVEEGKHYFQYMTEVLGLKPGMEHFGCMVDLLGRAGLLEEARKLINEMPVNPDAGVLGA 426

Query: 244 IVGACANFAVLELGKQIHGLVIAL-GYESCLFISNAIVDMYA---KCSDIIAAKDIFGRM 299
           +VGAC      ELG+QI   VI L  + S  ++   + ++YA   +  D+   + +    
Sbjct: 427 LVGACRIHGNTELGEQIGKKVIELEPHNSGRYV--LLANLYASAGRWEDVAKVRKLMNDR 484

Query: 300 RRKDVVSWTSI---------IVGTAQHGQAEETLALYDEMV 331
             K    ++ I         I G   H QA+E  A  DE++
Sbjct: 485 GVKKAPGFSMIESESGVDEFIAGGRAHPQAKEIYAKLDEIL 525


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  461 bits (1186), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 225/569 (39%), Positives = 340/569 (59%), Gaps = 3/569 (0%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +I  Y +  +V  A  L + MP R+ +SWA ++  Y Q    ++ + +    L  + +
Sbjct: 356 NAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQA-LHRNGM 414

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P      S   AC  +GA   G+QVH+  V +    +  V ++L+ MY KC      R 
Sbjct: 415 LPSLSSLTSSFLACSHIGALETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQ 474

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF+ +++K++VSW + ++A  ++   +DA  IF+    R++  WT ++S   Q+    +A
Sbjct: 475 VFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEA 534

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M  E      P +L+ ++  C      +LG+QIH + I  G +S L ++NA++ 
Sbjct: 535 VEFFKTMLHEHEKPNSP-ILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMS 593

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC    + K +F  M  +D+ +W + I G AQHG   E + +Y+ M S GV PNEVT
Sbjct: 594 MYFKCGCADSHK-VFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVT 652

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           FVGL+ ACSH GLV +G + FKSM  DYG+TP L+HY C++DLL R+G +  AE  I  M
Sbjct: 653 FVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDM 712

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P EPD   W+ALL ACK H+N E+G R A  L + +P +  +Y++LSN+Y+S  MW  V+
Sbjct: 713 PIEPDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVA 772

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           ++RK+M    V KEPG S+++     H F  G+  H   +EI   L +L   ++  GYVP
Sbjct: 773 ELRKIMKQRGVSKEPGCSWMQIRNKVHSFVTGDKQHEKIEEIDYTLQDLYTLLRGTGYVP 832

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           DT  VLHD+++++KE  L +HSE+LAVAYGLL +  G  ++++KNLR+CGDCH  +K +S
Sbjct: 833 DTEFVLHDIDEEQKESSLLYHSEKLAVAYGLLVTPKGMPIQIMKNLRICGDCHTFIKFVS 892

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +TKR+I +RD  R+HHF++G CSC DFW
Sbjct: 893 HVTKRDIDIRDGNRFHHFRNGSCSCGDFW 921



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 146/325 (44%), Gaps = 35/325 (10%)

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           +++L+   A+CG    AR +F+ I     VSW AM++ Y ++G   +A E+F++ P RN 
Sbjct: 324 QTALLTGLARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNT 383

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W  +++G  Q+    +A      + R G+      + SS + AC++   LE G+Q+H 
Sbjct: 384 ISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFL-ACSHIGALETGRQVHS 442

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L +  G +   ++ NA++ MY KC ++   + +F RMR KD VSW S I    Q+   E+
Sbjct: 443 LAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLED 502

Query: 323 TLALYDEMVSAGV-------------------------------KPNEVTFVGLIYACSH 351
              ++D M+S  V                               KPN      L+  C  
Sbjct: 503 ARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGG 562

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
           +G    G+++    I+ +G+   L     L+ +  + G  D +  +  +M  E D  TW 
Sbjct: 563 LGSAKLGQQIHTVAIK-HGMDSELIVANALMSMYFKCGCAD-SHKVFDSME-ERDIFTWN 619

Query: 412 ALLSACKHHRNTEMGTRVANHLLSL 436
             ++ C  H       ++  H+ S+
Sbjct: 620 TFITGCAQHGLGREAIKMYEHMESV 644



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 175/370 (47%), Gaps = 23/370 (6%)

Query: 57  AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116
           A  + + MP RD ++W S+++AY  + + +    +F      D +   +   A+++ +  
Sbjct: 52  AREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILF------DAISGGNVRTATILLS-- 103

Query: 117 SLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWT 175
             G  RLG+ + A  V     + + V  +++V  Y + G    AR +FD++  ++  SW 
Sbjct: 104 --GYARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSRDVTSWN 161

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
           +M++ Y  S +  DA  +F+Q P RNL  WT ++SG V+       +  F  M  EG   
Sbjct: 162 SMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGAS- 220

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK-CSDIIAAKD 294
            D    +S++ A      L + + +  LV+  G+ES + I  +I+++Y +  S +  A  
Sbjct: 221 PDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIK 280

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL 354
            F  M  ++  +W+++I   +  G+ +  +A+Y       +        GL    +  G 
Sbjct: 281 FFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGL----ARCGR 336

Query: 355 VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           + + R LF+ + +     P +  +  ++    ++G +DEA+ L   MPF  +  +WA ++
Sbjct: 337 ITEARILFEQIPD-----PIVVSWNAMITGYMQNGMVDEAKELFDRMPFR-NTISWAGMI 390

Query: 415 SACKHHRNTE 424
           +    +  +E
Sbjct: 391 AGYAQNGRSE 400



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 146/340 (42%), Gaps = 79/340 (23%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQY------------------------ 56
           T + +H+  +K G      + N LI  YGKC  ++Y                        
Sbjct: 436 TGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALV 495

Query: 57  -------AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFA 109
                  A H+ + M  RD VSW +I++AY QA    + +  F TML  +  +P+  +  
Sbjct: 496 QNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLH-EHEKPNSPILT 554

Query: 110 SLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
            L+  CG LG+ +LG+Q+H   +      + +V ++L+ MY KCG  ++ + VFDS++ +
Sbjct: 555 ILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCADSHK-VFDSMEER 613

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
           +  +W   ++  A+ G  ++A++++E                                M 
Sbjct: 614 DIFTWNTFITGCAQHGLGREAIKMYEH-------------------------------ME 642

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQI-------HGLVIALGYESCLFISNAIVDM 282
             GV + + +    ++ AC++  +++ G Q        +GL   L + +C+      VD+
Sbjct: 643 SVGV-LPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACM------VDL 695

Query: 283 YAKCSDIIAA-KDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             +  D+  A K I+      D V W++++     H  AE
Sbjct: 696 LGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAE 735



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 62/282 (21%), Positives = 134/282 (47%), Gaps = 12/282 (4%)

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D    S+ +   A+ G    AR VFD++  ++ ++W +M+SAY  SG  +DA  +F+   
Sbjct: 32  DKSAHSARIRELARLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAIS 91

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
             N+   T L+SG  +    +DA   F     +G+   + +  +++V        + + +
Sbjct: 92  GGNVRTATILLSGYARLGRVLDARRVF-----DGMPERNTVAWNAMVSCYVQNGDITMAR 146

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           ++   + +    S     N++V  Y     ++ A ++F +M ++++V+WT +I G  +  
Sbjct: 147 RLFDAMPSRDVTSW----NSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIE 202

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
           Q  +   ++  M   G  P++  F  ++ A + +  +G   ++ + ++   G    +   
Sbjct: 203 QHGKGWDIFRMMHHEGASPDQSNFASVLSAVTGLQDLGV-LEVLRPLVLKTGFESDVVIG 261

Query: 379 TCLLDLLSR-SGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           T +L++ +R +  LD A      M  E +E TW+ +++A  H
Sbjct: 262 TSILNVYTRDASALDIAIKFFDGM-VERNEYTWSTMIAALSH 302



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 87/199 (43%), Gaps = 16/199 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VC     A   + +H   IK G+     + N L+  Y KC     +H + + M +RD 
Sbjct: 557 LSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCAD-SHKVFDSMEERDI 615

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            +W + +T   Q  L ++ I ++  M ++  L P+   F  L+ AC   G    G Q   
Sbjct: 616 FTWNTFITGCAQHGLGREAIKMYEHMESVGVL-PNEVTFVGLLNACSHAGLVDEGWQFFK 674

Query: 130 C----FVLSPFCDDDVVKSSLVDMYAKCGLPNNA-RAVFDSIKLKNSVSWTAMLSA---- 180
                + L+P  +     + +VD+  + G    A + ++D     ++V W+A+L A    
Sbjct: 675 SMSRDYGLTPLLEH---YACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIH 731

Query: 181 -YARSGRKKDAMEIFEQAP 198
             A  GR+  A ++F   P
Sbjct: 732 KNAEIGRRA-AEKLFTTEP 749


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/601 (37%), Positives = 354/601 (58%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+VC+R Q     + +HA I+K G   +G + NTLI  Y  C  V+ A  + +EM +R+ 
Sbjct: 131 LKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNV 190

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            +W S+   Y ++   ++ + +F  ML LD ++ D     S++ ACG L    LG+ ++ 
Sbjct: 191 RTWNSMFAGYTKSGNWEEVVKLFHEMLELD-IRFDEVTLVSVLTACGRLADLELGEWINR 249

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                    +  + +SLVDMYAKCG  + AR +FD +  ++ V+W+AM+S Y+++ R ++
Sbjct: 250 YVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCRE 309

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+++F                                EM++  +D  + + + SI+ +CA
Sbjct: 310 ALDLFH-------------------------------EMQKANID-PNEITMVSILSSCA 337

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LE GK +H  +     +  + +  A++D YAKC  + ++ ++FG+M  K+V+SWT 
Sbjct: 338 VLGALETGKWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTV 397

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G A +GQ ++ L  +  M+   V+PN+VTF+G++ ACSH GLV +GR LF SM  D+
Sbjct: 398 LIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDF 457

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI P ++HY C++D+L R+G ++EA   IK MP +P+   W  LL++CK H+N E+G   
Sbjct: 458 GIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEES 517

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
              L+ L+P     YILLSN+YAS   W+   KVR  M    +KK PG S IE     H 
Sbjct: 518 LKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELDGVIHE 577

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F+A +  H   +EI+  + ++  ++K  GYVP+T+    D E+ +KE  +  HSE+LA+A
Sbjct: 578 FFAEDNVHSQSEEIYNAIEDMMKQIKSAGYVPNTAEARLDAEEDDKESSVSHHSEKLAIA 637

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GL+KS PGT +R+ KNLRVC DCH   K++S++  REIVVRD TR+HHFK+G CSCND+
Sbjct: 638 FGLIKSPPGTTIRITKNLRVCTDCHNATKLVSKVFNREIVVRDRTRFHHFKEGSCSCNDY 697

Query: 610 W 610
           W
Sbjct: 698 W 698



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 116/431 (26%), Positives = 196/431 (45%), Gaps = 70/431 (16%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKC--DLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +HA +IK  L     +   L+++        + YA  +  ++ + D  ++  ++  +   
Sbjct: 43  IHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLK 102

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P + I +F  M   + +QPD F F  ++K C  L A   G+Q+HA  +   F     V
Sbjct: 103 QSPHEAILLFKEMHE-NSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFV 161

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           K++L+ MYA CG    AR V                               F++   RN+
Sbjct: 162 KNTLIHMYANCGEVEVARRV-------------------------------FDEMSERNV 190

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLSSIVGACANFAVLELGKQIH 261
             W ++ +G  +S N  +    F EM    +DI  D + L S++ AC   A LELG+ I+
Sbjct: 191 RTWNSMFAGYTKSGNWEEVVKLFHEMLE--LDIRFDEVTLVSVLTACGRLADLELGEWIN 248

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             V   G +    +  ++VDMYAKC  +  A+ +F +M R+DVV+W+++I G +Q  +  
Sbjct: 249 RYVEEKGLKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCR 308

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR-----------KL--------- 361
           E L L+ EM  A + PNE+T V ++ +C+ +G +  G+           KL         
Sbjct: 309 EALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKLTVTLGTALM 368

Query: 362 --------FKSMIEDYGITP--SLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEP 408
                    +S IE +G  P  ++  +T L+  L+ +G   +A      M     EP++ 
Sbjct: 369 DFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDV 428

Query: 409 TWAALLSACKH 419
           T+  +LSAC H
Sbjct: 429 TFIGVLSACSH 439


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  461 bits (1185), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 226/572 (39%), Positives = 355/572 (62%), Gaps = 4/572 (0%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT+I ++ +  LV  A    E+M +RD VSW ++++ YNQ    ++ + IFS ML     
Sbjct: 215 NTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSS 274

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PD F  AS + AC +L   +LGKQ+HA  + + F     V ++L+ MY+K G    A+ 
Sbjct: 275 KPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQK 334

Query: 162 VFDSIKLKN--SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           + +   + N   +++TA+L  Y + G    A  IF+   VR++  WTA++ G VQ+    
Sbjct: 335 IIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQ 394

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           DA   F  M +EG    +   L++++   ++ A L+ G+QIH      G  S + +SNA+
Sbjct: 395 DAMELFRSMIKEGPK-PNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNAL 453

Query: 280 VDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           + MYAK   I  A+ +F  +  ++D ++WTS+I+  AQHG  EE L L++ M+  G+KP+
Sbjct: 454 ITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPD 513

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
            +T+VG++ AC+HVGLV +GR  +  M   + I P+  HY C++DL  R+G L EA   I
Sbjct: 514 HITYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFI 573

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
           + MP EPD   W +LL++CK H+N E+    A  LL ++PE+  +Y  L+NVY++   W+
Sbjct: 574 ENMPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEPENSGAYSALANVYSACGQWE 633

Query: 459 HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
           + + +RK M    VKK+ G+S+++     HIF   +  HP +D I+E++ ++  E+K+ G
Sbjct: 634 NAANIRKSMKDKGVKKDQGFSWVQIKNKVHIFGVDDGLHPQRDAIYEMMAKIWKEIKKMG 693

Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
           +VPDT SVLHD+E++ KE+ L  HSE+LA+A+GL+ +   T LR++KNLRVC DCH  +K
Sbjct: 694 FVPDTESVLHDLEEELKEQILSHHSEKLAIAFGLICTPENTTLRIMKNLRVCNDCHSAIK 753

Query: 579 MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            IS++  REI+VRDATR+HHFK+G CSC D+W
Sbjct: 754 FISKLVGREIIVRDATRFHHFKNGLCSCRDYW 785



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 138/500 (27%), Positives = 235/500 (47%), Gaps = 68/500 (13%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLV----------- 54
           Y   L+   + +   T K++HA+IIK GLH    L N L++ Y K   +           
Sbjct: 16  YTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGFIYDAHRVFDEMP 75

Query: 55  --------------------QYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFST 94
                               + AH + EEMP+ D VSW +++  YNQ    +  I +F  
Sbjct: 76  VKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQMGQFENAIGMFRE 135

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
           M++ D + P  F   +++ +C ++    +G++VH+  V         V +SL++MYAK G
Sbjct: 136 MVS-DDVPPTQFTLTNVLASCAAVECLGIGRKVHSFVVKHGLSSYISVANSLLNMYAKSG 194

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
            P  A+ VFD +KLK++ SW  M+S++ +SG    A   FEQ   R++  W A++SG  Q
Sbjct: 195 DPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQ 254

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF 274
              + +A   F +M  +     D   L+S + ACAN   L+LGKQIH  +I   +++   
Sbjct: 255 HGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGKQIHAHIIRTEFDTFGA 314

Query: 275 ISNAIVDMYAKC---------------------------------SDIIAAKDIFGRMRR 301
           + NA++ MY+K                                   DI  A+ IF  +R 
Sbjct: 315 VGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRV 374

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           +DVV+WT++IVG  Q+G  ++ + L+  M+  G KPN  T   ++   S +  +  GR++
Sbjct: 375 RDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQI 434

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
             S     G   S+     L+ + ++SG +++A  +   + ++ D  TW +++ A   H 
Sbjct: 435 HASATRS-GNASSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHG 493

Query: 422 NTEMGTRVANHLL--SLKPE 439
             E    +   +L   +KP+
Sbjct: 494 LGEEALTLFERMLENGIKPD 513


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  460 bits (1184), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 248/619 (40%), Positives = 351/619 (56%), Gaps = 64/619 (10%)

Query: 23  KTLHAQIIKLGLHQY--------------GPLP-----------------NTLIDAYGKC 51
           + +H QI++LG   Y              GP+                  NT+I    +C
Sbjct: 165 RQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNVVMCNTMITGLLRC 224

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
            +V  A  L E + +RD ++W +++T   Q  L  + + +F  M A + +  D + F S+
Sbjct: 225 KMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRA-EGVGIDQYTFGSI 283

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           + ACG+L A   GKQ+HA    + + D+  V S+LVDMY+KC     A AVF  +  KN 
Sbjct: 284 LTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNI 343

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           +S                               WTA++ G  Q+    +A   F EM+R+
Sbjct: 344 IS-------------------------------WTAMIVGYGQNGCGEEAVRVFSEMQRD 372

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
           G+   D   L S++ +CAN A LE G Q H L +  G    + +SNA+V +Y KC  I  
Sbjct: 373 GIK-PDDFTLGSVISSCANLASLEEGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIED 431

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           A  +F  M   D VSWT++++G AQ G+A+ET+ L+++M+S GVKP+ VTF+G++ ACS 
Sbjct: 432 AHRLFDEMSFHDQVSWTALVMGYAQFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSR 491

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
            GLV KGR  F SM +D+ I P   HYTC++DL SRSG L +AE  IK MP  PD   WA
Sbjct: 492 SGLVDKGRSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWA 551

Query: 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
            LLSAC+   + E+G   A +LL L P++P+SY+LL +++AS   W  V+K+R+ M   +
Sbjct: 552 TLLSACRLRGDMEIGKWAAENLLKLDPQNPASYVLLCSMHASKGEWNDVAKLRRGMRDRQ 611

Query: 472 VKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDME 531
           VKKEPG S+I++    HIF A + SHP    I+E L  L+++M   GY PD SSVLHD+ 
Sbjct: 612 VKKEPGCSWIKYKNKVHIFSADDQSHPFSRTIYEKLQWLNSKMVEEGYKPDVSSVLHDVA 671

Query: 532 QKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVR 591
             EK   L  HSE+LA+A+GL+   P   +R+VKNLRVC DCH   K IS+IT R+I+VR
Sbjct: 672 DAEKVHMLSHHSEKLAIAFGLIFVPPEMPIRIVKNLRVCVDCHNATKFISKITGRDILVR 731

Query: 592 DATRYHHFKDGKCSCNDFW 610
           DA R+H F +G CSC DFW
Sbjct: 732 DAVRFHKFSNGICSCGDFW 750



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 124/374 (33%), Positives = 199/374 (53%), Gaps = 4/374 (1%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDK- 100
           N+L+ A  +  LV+    L   +PQRD VS+ ++L  +++A    +    +  +L  +  
Sbjct: 81  NSLLSALARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAG 140

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           ++P     + +V    +LG   LG+QVH   +   F       S LVDMYAK G   +AR
Sbjct: 141 VRPSRITMSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDAR 200

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            VFD ++ KN V    M++   R     +A  +FE    R+   WT +V+GL Q+  E +
Sbjct: 201 RVFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESE 260

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
           A   F  MR EGV I D     SI+ AC   A LE GKQIH  +    YE  +F+ +A+V
Sbjct: 261 ALDVFRRMRAEGVGI-DQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALV 319

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           DMY+KC  +  A+ +F RM  K+++SWT++IVG  Q+G  EE + ++ EM   G+KP++ 
Sbjct: 320 DMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDF 379

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           T   +I +C+++  + +G + F  +    G+ P +     L+ L  + G +++A  L   
Sbjct: 380 TLGSVISSCANLASLEEGAQ-FHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDE 438

Query: 401 MPFEPDEPTWAALL 414
           M F  D+ +W AL+
Sbjct: 439 MSFH-DQVSWTALV 451



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 166/357 (46%), Gaps = 45/357 (12%)

Query: 123 LGKQVHACFVLS-PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
           L   VHA  + + P      + ++L+  YA  GL  +AR VFD++  +N V+  ++LSA 
Sbjct: 28  LTAAVHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSAL 87

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLV 240
           AR+G  +D   +F   P R+   + AL++G  ++     A  +++ + R+   +    + 
Sbjct: 88  ARAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRIT 147

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           +S +V   +      LG+Q+H  ++ LG+ +  F  + +VDMYAK   I  A+ +F  M 
Sbjct: 148 MSGVVMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEME 207

Query: 301 RKDVV-------------------------------SWTSIIVGTAQHGQAEETLALYDE 329
            K+VV                               +WT+++ G  Q+G   E L ++  
Sbjct: 208 GKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRR 267

Query: 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF----KSMIEDYGITPSLQHYTCLLDLL 385
           M + GV  ++ TF  ++ AC  +  + +G+++     ++  ED     S      L+D+ 
Sbjct: 268 MRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGS-----ALVDMY 322

Query: 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPED 440
           S+   +  AE + + M ++ +  +W A++     +   E   RV + +    +KP+D
Sbjct: 323 SKCRSVRLAEAVFRRMMWK-NIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDD 378


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/569 (39%), Positives = 336/569 (59%), Gaps = 3/569 (0%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N LI  Y +  +V  A  L ++MP R+ +SWA ++  Y Q    ++ + +    L    +
Sbjct: 357 NALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQE-LHRSGM 415

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P      S+  AC ++ A   G QVH+  V      +    ++L+ MY KC     AR 
Sbjct: 416 LPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQ 475

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF  +  K+ VSW + L+A  ++    +A   F+    R+   WT ++S    +    +A
Sbjct: 476 VFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEA 535

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
             +F  M  E  ++ +  +L+ ++G C +    ++G+QIH + I LG +S L ++NA++ 
Sbjct: 536 MGAFKTMFCEH-ELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALIS 594

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC     ++ IF  M  +D+ +W +II G AQHG   E + +Y  M SAGV PNEVT
Sbjct: 595 MYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVT 653

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           FVGL+ ACSH GLV +G K FKSM +DYG+TP  +HY C++DLL R+G +  AE  I  M
Sbjct: 654 FVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDM 713

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P EPD   W+ALL ACK H+N E+G R A  L  ++P +  +Y++LSN+Y+S  MW  V+
Sbjct: 714 PIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVA 773

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           +VRK+M    V KEPG S+ +     H F  G+  H   +EI   L EL   +K  GYVP
Sbjct: 774 EVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVP 833

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           DT  VLHD+++++KE  L +HSE+LAVAY LL +  G  ++++KNLR+CGDCH  +K +S
Sbjct: 834 DTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVS 893

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +TKR+I +RD  R+HHF++G CSC DFW
Sbjct: 894 HVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 171/343 (49%), Gaps = 24/343 (6%)

Query: 34  LHQYGPLPN--------TLIDAYGKCDLVQYAHHL-LEEMPQRDHVSWASILTAYNQ-AN 83
           +H+ G LP+        + +   G  D+++    L L+   +RD V   +IL  Y++  +
Sbjct: 215 MHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTS 274

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
           +    I  F +M+     + + + +++++ A    G  R+   + A +   P       +
Sbjct: 275 VLDTAIKFFESMI-----ERNEYTWSTMIAALSHGG--RIDAAI-AVYERDPV-KSIACR 325

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           ++L+   A+CG  ++AR +F+ I     VSW A+++ Y ++G   +A E+F++ P RN  
Sbjct: 326 TALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTI 385

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            W  +++G  Q+    +A     E+ R G+ +     L+SI  AC+N   LE G Q+H L
Sbjct: 386 SWAGMIAGYAQNGRSEEALGLLQELHRSGM-LPSLSSLTSIFFACSNIVALETGTQVHSL 444

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
            + +G +   F  NA++ MY KC ++  A+ +F RM  KD+VSW S +    Q+   +E 
Sbjct: 445 AVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEA 504

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
              +D M+S     ++V++  +I A +H     +    FK+M 
Sbjct: 505 RNTFDNMLS----RDDVSWTTIISAYAHAEQSNEAMGAFKTMF 543



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 188/396 (47%), Gaps = 27/396 (6%)

Query: 35  HQYGPLP----NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTIS 90
           H +G L     +  I   G+   V  A  + + MP+RD ++W S+++AY    +P     
Sbjct: 27  HAHGELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARD 86

Query: 91  IFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDM 149
           ++      D +   +    +++ +    G  RLG+ + A  V     + + V  ++++  
Sbjct: 87  LY------DAISGGNMRTGAILLS----GYGRLGRVLEARRVFDGMLERNTVAWNAMISC 136

Query: 150 YAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALV 209
           Y + G    AR +FD++  ++  SW +ML+ Y  S +  DA  +FE+ P RNL  WT ++
Sbjct: 137 YVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMI 196

Query: 210 SGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY 269
           SG  +  N   A+  F +M REG+ + D    +S + A      L++ + +  L +  G+
Sbjct: 197 SGYGRIENHGKAWDIFCKMHREGL-LPDQSNFASALSAVKGLGNLDVLESLRVLALKTGF 255

Query: 270 ESCLFISNAIVDMYAKCSDII-AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
           E  + I  AI+++Y++ + ++  A   F  M  ++  +W+++I   +  G+ +  +A+Y+
Sbjct: 256 ERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE 315

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
                 +        GL    +  G +   R LF+ + E     P +  +  L+    ++
Sbjct: 316 RDPVKSIACRTALITGL----AQCGRIDDARILFEQIPE-----PIVVSWNALITGYMQN 366

Query: 389 GHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           G ++EA+ L   MPF  +  +WA +++    +  +E
Sbjct: 367 GMVNEAKELFDKMPFR-NTISWAGMIAGYAQNGRSE 401



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 200/473 (42%), Gaps = 110/473 (23%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA-----------NLPQKTIS 90
           N +I  Y +   +  A  L + MP RD  SW S+LT Y  +            +P++ + 
Sbjct: 131 NAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLV 190

Query: 91  IFSTMLA-------------------LDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
            ++ M++                    + L PD   FAS + A   LG   + + +    
Sbjct: 191 SWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLA 250

Query: 132 VLSPFCDDDVVKSSLVDMYAK-CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
           + + F  D V+ ++++++Y++   + + A   F+S+  +N  +W+ M++A +  GR   A
Sbjct: 251 LKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAA 310

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
           + ++E+ PV+++   TAL++GL Q     DA   F +       I +P+V+S        
Sbjct: 311 IAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQ-------IPEPIVVS-------- 355

Query: 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
                                     NA++  Y +   +  AK++F +M  ++ +SW  +
Sbjct: 356 -------------------------WNALITGYMQNGMVNEAKELFDKMPFRNTISWAGM 390

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL--------- 361
           I G AQ+G++EE L L  E+  +G+ P+  +   + +ACS++  +  G ++         
Sbjct: 391 IAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGC 450

Query: 362 -FKS-----MIEDYG---------------ITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
            F S     +I  YG               +T  +  +   L  L ++  LDEA N    
Sbjct: 451 QFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDN 510

Query: 401 MPFEPDEPTWAALLSACKH--HRNTEMG---TRVANHLLSLKPEDPSSYILLS 448
           M    D+ +W  ++SA  H    N  MG   T    H L   P  P   ILL 
Sbjct: 511 M-LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL---PNSPILTILLG 559



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 169/402 (42%), Gaps = 97/402 (24%)

Query: 18  IALTVKT-LHAQIIKLGLHQYGPLPNTLIDAYGKC------------------------- 51
           +AL   T +H+  +K+G        N LI  YGKC                         
Sbjct: 433 VALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFL 492

Query: 52  ------DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDH 105
                 DL+  A +  + M  RD VSW +I++AY  A    + +  F TM    +L P+ 
Sbjct: 493 AALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-PNS 551

Query: 106 FVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDS 165
            +   L+  CGSLGA+++G+Q+H   +      + +V ++L+ MY KCG   ++R +FD 
Sbjct: 552 PILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCA-DSRRIFDL 610

Query: 166 IKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE---IDAF 222
           ++ ++  +W  +++ YA+ G  ++A+++++      +        GL+ + +    +D  
Sbjct: 611 MEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEG 670

Query: 223 YSFIEMRREG-------------VDIV--------------------DPLVLSSIVGACA 249
           + F +   +              VD++                    D ++ S+++GAC 
Sbjct: 671 WKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACK 730

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR-------MRRK 302
                E+GK+          E    I  +    Y   S+I ++  ++G        M+++
Sbjct: 731 IHKNAEIGKR--------AAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQ 782

Query: 303 DVV-----SWTSI-------IVGTAQHGQAEETLALYDEMVS 332
            V+     SWT I       + G  QH Q EE +A  +E+ +
Sbjct: 783 GVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYT 824



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 10/176 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VC     +   + +H   IKLG+     + N LI  Y KC     +  + + M +RD 
Sbjct: 558 LGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDI 616

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
            +W +I+T Y Q  L ++ I ++  M +   L P+   F  L+ AC   G    G    K
Sbjct: 617 FTWNTIITGYAQHGLGREAIKMYQHMESAGVL-PNEVTFVGLLNACSHAGLVDEGWKFFK 675

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA-VFDSIKLKNSVSWTAMLSA 180
            +   + L+P  +     + +VD+  + G    A   ++D     ++V W+A+L A
Sbjct: 676 SMSQDYGLTPLPEH---YACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGA 728


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  460 bits (1184), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/569 (39%), Positives = 336/569 (59%), Gaps = 3/569 (0%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N LI  Y +  +V  A  L ++MP R+ +SWA ++  Y Q    ++ + +    L    +
Sbjct: 357 NALITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQE-LHRSGM 415

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P      S+  AC ++ A   G QVH+  V      +    ++L+ MY KC     AR 
Sbjct: 416 LPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQ 475

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF  +  K+ VSW + L+A  ++    +A   F+    R+   WT ++S    +    +A
Sbjct: 476 VFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEA 535

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
             +F  M  E  ++ +  +L+ ++G C +    ++G+QIH + I LG +S L ++NA++ 
Sbjct: 536 MGAFKTMFCEH-ELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALIS 594

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC     ++ IF  M  +D+ +W +II G AQHG   E + +Y  M SAGV PNEVT
Sbjct: 595 MYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVT 653

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           FVGL+ ACSH GLV +G K FKSM +DYG+TP  +HY C++DLL R+G +  AE  I  M
Sbjct: 654 FVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDM 713

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P EPD   W+ALL ACK H+N E+G R A  L  ++P +  +Y++LSN+Y+S  MW  V+
Sbjct: 714 PIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVA 773

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           +VRK+M    V KEPG S+ +     H F  G+  H   +EI   L EL   +K  GYVP
Sbjct: 774 EVRKIMKQQGVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYTLLKATGYVP 833

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           DT  VLHD+++++KE  L +HSE+LAVAY LL +  G  ++++KNLR+CGDCH  +K +S
Sbjct: 834 DTEFVLHDIDEEQKESSLLYHSEKLAVAYCLLATPKGMPIQILKNLRICGDCHTFIKFVS 893

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +TKR+I +RD  R+HHF++G CSC DFW
Sbjct: 894 HVTKRQIDIRDGNRFHHFRNGSCSCEDFW 922



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 171/343 (49%), Gaps = 24/343 (6%)

Query: 34  LHQYGPLPN--------TLIDAYGKCDLVQYAHHL-LEEMPQRDHVSWASILTAYNQ-AN 83
           +H+ G LP+        + +   G  D+++    L L+   +RD V   +IL  Y++  +
Sbjct: 215 MHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDTS 274

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
           +    I  F +M+     + + + +++++ A    G  R+   + A +   P       +
Sbjct: 275 VLDTAIKFFESMI-----ERNEYTWSTMIAALSHGG--RIDAAI-AVYERDPV-KSIACR 325

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           ++L+   A+CG  ++AR +F+ I     VSW A+++ Y ++G   +A E+F++ P RN  
Sbjct: 326 TALITGLAQCGRIDDARILFEQIPEPIVVSWNALITGYMQNGMVNEAKELFDKMPFRNTI 385

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            W  +++G  Q+    +A     E+ R G+ +     L+SI  AC+N   LE G Q+H L
Sbjct: 386 SWAGMIAGYAQNGRSEEALGLLQELHRSGM-LPSLSSLTSIFFACSNIVALETGTQVHSL 444

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
            + +G +   F  NA++ MY KC ++  A+ +F RM  KD+VSW S +    Q+   +E 
Sbjct: 445 AVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEA 504

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
              +D M+S     ++V++  +I A +H     +    FK+M 
Sbjct: 505 RNTFDNMLS----RDDVSWTTIISAYAHAEQSNEAMGAFKTMF 543



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 188/396 (47%), Gaps = 27/396 (6%)

Query: 35  HQYGPLP----NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTIS 90
           H +G L     +  I   G+   V  A  + + MP+RD ++W S+++AY    +P     
Sbjct: 27  HAHGELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARD 86

Query: 91  IFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDM 149
           ++      D +   +    +++ +    G  RLG+ + A  V     + + V  ++++  
Sbjct: 87  LY------DAISGGNMRTGAILLS----GYGRLGRVLEARRVFDGMLERNTVAWNAMISC 136

Query: 150 YAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALV 209
           Y + G    AR +FD++  ++  SW +ML+ Y  S +  DA  +FE+ P RNL  WT ++
Sbjct: 137 YVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMI 196

Query: 210 SGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY 269
           SG  +  N   A+  F +M REG+ + D    +S + A      L++ + +  L +  G+
Sbjct: 197 SGYGRIENHGKAWDIFCKMHREGL-LPDQSNFASALSAVKGLGNLDVLESLRVLALKTGF 255

Query: 270 ESCLFISNAIVDMYAKCSDII-AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
           E  + I  AI+++Y++ + ++  A   F  M  ++  +W+++I   +  G+ +  +A+Y+
Sbjct: 256 ERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYE 315

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
                 +        GL    +  G +   R LF+ + E     P +  +  L+    ++
Sbjct: 316 RDPVKSIACRTALITGL----AQCGRIDDARILFEQIPE-----PIVVSWNALITGYMQN 366

Query: 389 GHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           G ++EA+ L   MPF  +  +WA +++    +  +E
Sbjct: 367 GMVNEAKELFDKMPFR-NTISWAGMIAGYAQNGRSE 401



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 200/473 (42%), Gaps = 110/473 (23%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA-----------NLPQKTIS 90
           N +I  Y +   +  A  L + MP RD  SW S+LT Y  +            +P++ + 
Sbjct: 131 NAMISCYVQNGDITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLV 190

Query: 91  IFSTMLA-------------------LDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
            ++ M++                    + L PD   FAS + A   LG   + + +    
Sbjct: 191 SWTVMISGYGRIENHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLA 250

Query: 132 VLSPFCDDDVVKSSLVDMYAK-CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
           + + F  D V+ ++++++Y++   + + A   F+S+  +N  +W+ M++A +  GR   A
Sbjct: 251 LKTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAA 310

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
           + ++E+ PV+++   TAL++GL Q     DA   F +       I +P+V+S        
Sbjct: 311 IAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQ-------IPEPIVVS-------- 355

Query: 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
                                     NA++  Y +   +  AK++F +M  ++ +SW  +
Sbjct: 356 -------------------------WNALITGYMQNGMVNEAKELFDKMPFRNTISWAGM 390

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL--------- 361
           I G AQ+G++EE L L  E+  +G+ P+  +   + +ACS++  +  G ++         
Sbjct: 391 IAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQVHSLAVKVGC 450

Query: 362 -FKS-----MIEDYG---------------ITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
            F S     +I  YG               +T  +  +   L  L ++  LDEA N    
Sbjct: 451 QFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDN 510

Query: 401 MPFEPDEPTWAALLSACKH--HRNTEMG---TRVANHLLSLKPEDPSSYILLS 448
           M    D+ +W  ++SA  H    N  MG   T    H L   P  P   ILL 
Sbjct: 511 M-LSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL---PNSPILTILLG 559



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/402 (22%), Positives = 169/402 (42%), Gaps = 97/402 (24%)

Query: 18  IALTVKT-LHAQIIKLGLHQYGPLPNTLIDAYGKC------------------------- 51
           +AL   T +H+  +K+G        N LI  YGKC                         
Sbjct: 433 VALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFL 492

Query: 52  ------DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDH 105
                 DL+  A +  + M  RD VSW +I++AY  A    + +  F TM    +L P+ 
Sbjct: 493 AALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHEL-PNS 551

Query: 106 FVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDS 165
            +   L+  CGSLGA+++G+Q+H   +      + +V ++L+ MY KCG   ++R +FD 
Sbjct: 552 PILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCA-DSRRIFDL 610

Query: 166 IKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE---IDAF 222
           ++ ++  +W  +++ YA+ G  ++A+++++      +        GL+ + +    +D  
Sbjct: 611 MEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEG 670

Query: 223 YSFIEMRREG-------------VDIV--------------------DPLVLSSIVGACA 249
           + F +   +              VD++                    D ++ S+++GAC 
Sbjct: 671 WKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACK 730

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR-------MRRK 302
                E+GK+          E    I  +    Y   S+I ++  ++G        M+++
Sbjct: 731 IHKNAEIGKR--------AAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQ 782

Query: 303 DVV-----SWTSI-------IVGTAQHGQAEETLALYDEMVS 332
            V+     SWT I       + G  QH Q EE +A  +E+ +
Sbjct: 783 GVIKEPGCSWTQIKDKMHSFVTGDKQHEQIEEIVATLEELYT 824



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 10/176 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VC     +   + +H   IKLG+     + N LI  Y KC     +  + + M +RD 
Sbjct: 558 LGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDI 616

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
            +W +I+T Y Q  L ++ I ++  M +   L P+   F  L+ AC   G    G    K
Sbjct: 617 FTWNTIITGYAQHGLGREAIKMYQHMESAGVL-PNEVTFVGLLNACSHAGLVDEGWKFFK 675

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA-VFDSIKLKNSVSWTAMLSA 180
            +   + L+P  +     + +VD+  + G    A   ++D     ++V W+A+L A
Sbjct: 676 SMSQDYGLTPLPEH---YACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGA 728


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  460 bits (1183), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/622 (37%), Positives = 358/622 (57%), Gaps = 35/622 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGK-------------------------------C 51
           K +H+ ++KLGLH   P+ N+L++ Y K                               C
Sbjct: 127 KKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNC 186

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
             V  A    E + +RD VSW S++   NQ     + +  FS++L    L+PD F  AS 
Sbjct: 187 GRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASA 246

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFD--SIKLK 169
           + AC +L     GKQ+H   V + F     V ++L+ MYAK G    AR + +   I   
Sbjct: 247 LSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDL 306

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
           + +++TA+L+ Y + G    A +IF      ++  WTA++ G VQ+    DA   F  M 
Sbjct: 307 DVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMV 366

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289
            EG    +   L++++ A ++   L  GKQIH   I  G      + NA+  MYAK   I
Sbjct: 367 SEGPR-PNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSI 425

Query: 290 IAAKDIFGRMRR-KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
             A+ +F  +R+ +D VSWTS+I+  AQHG  EE + L+++M++ G+KP+ +T+VG++ A
Sbjct: 426 NGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSA 485

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           C+H GLV +GR  F  M   + I P+L HY C++DL  R+G L EA   ++ MP EPD  
Sbjct: 486 CTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVI 545

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
            W +LLS+CK ++N ++    A  LL ++P +  +Y  L+NVY+S   W   +K+RKLM 
Sbjct: 546 AWGSLLSSCKVYKNVDLAKVAAERLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMK 605

Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH 528
              VKKE G S+++    +H+F   +  HP KDEI++++ ++  E+K+ G+ PDT SVLH
Sbjct: 606 ARGVKKEQGLSWVQIQNKTHVFGVEDGLHPQKDEIYKMMDKIWKEIKKMGFAPDTESVLH 665

Query: 529 DMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREI 588
           D+E + K++ L +HSE+LA+A+G++ +   T LR++KNLRVC DCH  +K IS++  REI
Sbjct: 666 DLEVEVKDQILRYHSEKLAIAFGIISTPENTTLRIMKNLRVCNDCHNAIKFISKLVDREI 725

Query: 589 VVRDATRYHHFKDGKCSCNDFW 610
           +VRDATR+HHFKDG CSC D+W
Sbjct: 726 IVRDATRFHHFKDGSCSCKDYW 747



 Score =  205 bits (521), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 136/490 (27%), Positives = 229/490 (46%), Gaps = 70/490 (14%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT++  Y K   ++ AH + + +P RD VSW +I+  YNQ    +  I IF  M+  DK+
Sbjct: 45  NTILSGYAKQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVK-DKV 103

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P  F   +++ +C + G+  +GK+VH+  V         V +SL++MYAK G    A+ 
Sbjct: 104 LPTQFTLTNVLASCAATGSRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKV 163

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VFD +KL+N+ SW AM+S +   GR   A+  FE    R++  W ++++G  Q   + +A
Sbjct: 164 VFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEA 223

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  + ++     D   L+S + ACAN   L  GKQIHG ++   +++   + NA++ 
Sbjct: 224 LQFFSSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALIS 283

Query: 282 MYAKC---------------------------------SDIIAAKDIFGRMRRKDVVSWT 308
           MYAK                                   DI  A+ IF  ++  DVV+WT
Sbjct: 284 MYAKSGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWT 343

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++IVG  Q+G   + + ++  MVS G +PN  T   ++ A S V  +  G+++  S I  
Sbjct: 344 AMIVGYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRS 403

Query: 369 -YGITPSLQH------------------------------YTCLLDLLSRSGHLDEAENL 397
              ++PS+ +                              +T ++  L++ G  +EA  L
Sbjct: 404 GEALSPSVGNALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIEL 463

Query: 398 IKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP--SSYILLSNVYA 452
            + M     +PD  T+  +LSAC H    E G    + + ++   DP  S Y  + +++ 
Sbjct: 464 FEQMLTLGIKPDHITYVGVLSACTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFG 523

Query: 453 SAAMWQHVSK 462
            A + Q   K
Sbjct: 524 RAGLLQEAYK 533



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 176/377 (46%), Gaps = 67/377 (17%)

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           ++L+++YAK G   +A  +F+ + +K + SW  +LS YA+ G+ + A ++F+  PVR+  
Sbjct: 14  NNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSV 73

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            WT ++ G  Q     DA   F++M ++ V +     L++++ +CA      +GK++H  
Sbjct: 74  SWTTIIVGYNQMGRFEDAIKIFVDMVKDKV-LPTQFTLTNVLASCAATGSRGIGKKVHSF 132

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR----------------------- 300
           V+ LG  +C+ ++N++++MYAK  D+  AK +F RM+                       
Sbjct: 133 VVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLA 192

Query: 301 --------RKDVVSWTSIIVGTAQHGQAEETLALYDEMV-SAGVKPNEVTFVGLIYACSH 351
                    +D+VSW S+I G  QHG   E L  +  ++    +KP+  +    + AC++
Sbjct: 193 LAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLASALSACAN 252

Query: 352 V---------------------GLVGK----------GRKLFKSMIEDYGITP-SLQHYT 379
           +                     G VG           G ++ + +IE  GI+   +  +T
Sbjct: 253 LEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDLDVIAFT 312

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
            LL+   + G +  A  +  ++  +PD   W A++     +        V   ++S  P 
Sbjct: 313 ALLNGYVKLGDITPARQIFNSLK-DPDVVAWTAMIVGYVQNGLNNDAIEVFKTMVSEGPR 371

Query: 440 DPSSYILLSNVYASAAM 456
            P+S+ L + + AS+++
Sbjct: 372 -PNSFTLAAMLSASSSV 387



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 104/221 (47%), Gaps = 35/221 (15%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE------ 63
           L  CA  +     K +H  I++      G + N LI  Y K   V+ A  ++E+      
Sbjct: 247 LSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISDL 306

Query: 64  ------------------MPQR---------DHVSWASILTAYNQANLPQKTISIFSTML 96
                              P R         D V+W +++  Y Q  L    I +F TM+
Sbjct: 307 DVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTMV 366

Query: 97  ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP 156
           + +  +P+ F  A+++ A  S+ +   GKQ+HA  + S       V ++L  MYAK G  
Sbjct: 367 S-EGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSI 425

Query: 157 NNARAVFDSIKL-KNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           N AR VF+ ++  +++VSWT+M+ A A+ G  ++A+E+FEQ
Sbjct: 426 NGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQ 466



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/183 (21%), Positives = 80/183 (43%), Gaps = 33/183 (18%)

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           ++ LG    +++ N ++++YAK    + A D+F  M  K   SW +I+ G A+ G+ E+ 
Sbjct: 1   MVKLGLTFSVYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKA 60

Query: 324 LALYD-------------------------------EMVSAGVKPNEVTFVGLIYACSHV 352
             ++D                               +MV   V P + T   ++ +C+  
Sbjct: 61  HQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAAT 120

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           G  G G+K+  S +   G+   +     LL++ +++G L  A+ +   M    +  +W A
Sbjct: 121 GSRGIGKKV-HSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLR-NTSSWNA 178

Query: 413 LLS 415
           ++S
Sbjct: 179 MIS 181


>gi|225442904|ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930 [Vitis vinifera]
          Length = 724

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 222/588 (37%), Positives = 348/588 (59%), Gaps = 2/588 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH  I+KLG      + N LI  Y     V  A  + +   + D V+W  +++ YN++
Sbjct: 139 RELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRS 198

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               +++ +F  M  + ++ P      S++ AC  L    +GK+VH            V+
Sbjct: 199 KQFDESMKLFDEMERM-RVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVL 257

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           +++L+DMYA CG  + A  +FD++K ++ +SWTA+++ +   G+   A   F++ P R+ 
Sbjct: 258 ENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQVGLARNYFDKMPERDF 317

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WTA++ G +Q     +    F EM+   +   D   + SI+ ACA+   LELG+ I  
Sbjct: 318 VSWTAMIDGYLQVNRFKEVLSLFREMQAANIK-PDEFTMVSILTACAHLGALELGEWIKA 376

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +     +   F+ NA++DMY  C ++  A  IF  M  +D +SWT++I G A +G  EE
Sbjct: 377 YIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHRDKISWTAVIFGLAINGYGEE 436

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L ++ +M+ A + P+EVT +G++ AC+H G+V KG+K F  M   +GI P++ HY C++
Sbjct: 437 ALDMFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMV 496

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+GHL EA  +IK MP +P+   W +LL AC+ HR+ EM    A  +L L+PE+ +
Sbjct: 497 DLLGRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAEMAAQQILELEPENGA 556

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            Y+LL N+YA+   W+ + +VRKLM    +KK PG S IE     H F AG+  HP   E
Sbjct: 557 VYVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKE 616

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L E+  ++K  GY PDTS V  D+ ++EKE  ++ HSE+LA+A+GL+ S PG  +R
Sbjct: 617 IYSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLAIAFGLISSGPGVTIR 676

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +VKNLR+C DCH V K++S++  RE++VRD TR+HHF+ G CSC D+W
Sbjct: 677 IVKNLRMCVDCHYVAKLVSKVYNREVIVRDRTRFHHFRHGSCSCKDYW 724



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/426 (26%), Positives = 199/426 (46%), Gaps = 68/426 (15%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL--VQYAHHLLEEMPQRDHVSWASILTAY 79
           +K +H+Q I  GL     +P  +I    K +L  ++YA  + + MP  +H  W +++  Y
Sbjct: 35  LKQIHSQTICTGLISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGY 94

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
           ++   P   +S++  ML    + PD + +  L+K      A + G+++H   V   F  +
Sbjct: 95  SRVGCPNSAVSMYCEMLE-RGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSN 153

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             V+++L+ +Y+  G  + AR VFD     + V+W  M+S Y RS +  ++M++F+    
Sbjct: 154 VFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFD---- 209

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                      EM R  V +   + L S++ AC+    L +GK+
Sbjct: 210 ---------------------------EMERMRV-LPSSITLVSVLSACSKLKDLNVGKR 241

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           +H  V  L  E    + NA++DMYA C D+  A  IF  M+ +DV+SWT+I+ G    GQ
Sbjct: 242 VHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDVISWTAIVTGFTNLGQ 301

Query: 320 A-------------------------------EETLALYDEMVSAGVKPNEVTFVGLIYA 348
                                           +E L+L+ EM +A +KP+E T V ++ A
Sbjct: 302 VGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEFTMVSILTA 361

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           C+H+G +  G +  K+ I+   I         L+D+    G++++A  +  AMP   D+ 
Sbjct: 362 CAHLGALELG-EWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRIFNAMPHR-DKI 419

Query: 409 TWAALL 414
           +W A++
Sbjct: 420 SWTAVI 425



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 135/291 (46%), Gaps = 6/291 (2%)

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G  + A  +F+  P  N F+W  ++ G  +      A   + EM   GV + D      +
Sbjct: 67  GDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSMYCEMLERGV-MPDEYTYPFL 125

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           +        ++ G+++H  ++ LG+ S +F+ NA++ +Y+   ++  A+ +F R  + DV
Sbjct: 126 LKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDV 185

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           V+W  +I G  +  Q +E++ L+DEM    V P+ +T V ++ ACS +  +  G+++ + 
Sbjct: 186 VTWNVMISGYNRSKQFDESMKLFDEMERMRVLPSSITLVSVLSACSKLKDLNVGKRVHR- 244

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
            ++D  I P       L+D+ +  G +D A  +   M    D  +W A+++      N  
Sbjct: 245 YVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMK-SRDVISWTAIVTG---FTNLG 300

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKE 475
                 N+   +   D  S+  + + Y     ++ V  + + M    +K +
Sbjct: 301 QVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPD 351



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 57/218 (26%), Positives = 100/218 (45%), Gaps = 32/218 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C++ +     K +H  +  L +     L N LID Y  C  +  A  + + M  RD 
Sbjct: 227 LSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDMDTALGIFDNMKSRDV 286

Query: 70  VSWASILTAYN-------------------------------QANLPQKTISIFSTMLAL 98
           +SW +I+T +                                Q N  ++ +S+F  M A 
Sbjct: 287 ISWTAIVTGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAA 346

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           + ++PD F   S++ AC  LGA  LG+ + A    +    D  V ++L+DMY  CG    
Sbjct: 347 N-IKPDEFTMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEK 405

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           A  +F+++  ++ +SWTA++   A +G  ++A+++F Q
Sbjct: 406 AIRIFNAMPHRDKISWTAVIFGLAINGYGEEALDMFSQ 443


>gi|356533814|ref|XP_003535453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Glycine max]
          Length = 782

 Score =  459 bits (1182), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 229/577 (39%), Positives = 346/577 (59%), Gaps = 8/577 (1%)

Query: 39  PLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
           P   T+I  Y + D +  A  LLE M     V+W ++++ Y      ++   +   M +L
Sbjct: 209 PAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAMISGYVHRGFYEEAFDLLRRMHSL 268

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD-----VVKSSLVDMYAKC 153
             +Q D + + S++ A  + G   +G+QVHA +VL             V ++L+ +Y +C
Sbjct: 269 G-IQLDEYTYTSVISAASNAGLFNIGRQVHA-YVLRTVVQPSGHFVLSVNNALITLYTRC 326

Query: 154 GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLV 213
           G    AR VFD + +K+ VSW A+LS    + R ++A  IF + PVR+L  WT ++SGL 
Sbjct: 327 GKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEANSIFREMPVRSLLTWTVMISGLA 386

Query: 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
           Q+    +    F +M+ EG++  D    +  + +C+    L+ G+Q+H  +I LG++S L
Sbjct: 387 QNGFGEEGLKLFNQMKLEGLEPCD-YAYAGAIASCSVLGSLDNGQQLHSQIIQLGHDSSL 445

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
            + NA++ MY++C  + AA  +F  M   D VSW ++I   AQHG   + + LY++M+  
Sbjct: 446 SVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQHGHGVQAIQLYEKMLKE 505

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
            + P+ +TF+ ++ ACSH GLV +GR  F +M   YGITP   HY+ L+DLL R+G   E
Sbjct: 506 DILPDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEEDHYSRLIDLLCRAGMFSE 565

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453
           A+N+ ++MPFEP  P W ALL+ C  H N E+G + A+ LL L P+   +YI LSN+YA+
Sbjct: 566 AKNVTESMPFEPGAPIWEALLAGCWIHGNMELGIQAADRLLELMPQQDGTYISLSNMYAA 625

Query: 454 AAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAE 513
              W  V++VRKLM    VKKEPG S+IE     H+F   +  HP    ++  L +L  E
Sbjct: 626 LGQWDEVARVRKLMRERGVKKEPGCSWIEVENMVHVFLVDDAVHPEVHAVYRYLEQLVHE 685

Query: 514 MKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDC 573
           M++ GYVPDT  VLHDME ++KE  L  HSE+LAV YG++K   G  +RV KNLR+CGDC
Sbjct: 686 MRKLGYVPDTKFVLHDMESEQKEYALSTHSEKLAVVYGIMKLPLGATIRVFKNLRICGDC 745

Query: 574 HIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           H   K IS++  REI+VRD  R+HHF++G+CSC+++W
Sbjct: 746 HNAFKYISKVVDREIIVRDRKRFHHFRNGECSCSNYW 782



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 115/488 (23%), Positives = 208/488 (42%), Gaps = 104/488 (21%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---------------- 66
           + +HA I+  G   +  + N LID Y K   + YA +L +++P+                
Sbjct: 16  RAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAATTMLSAYSAA 75

Query: 67  -----------------RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFA 109
                            RD VS+ +++TA++ ++     + +F  M  L    PD F F+
Sbjct: 76  GNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLG-FVPDPFTFS 134

Query: 110 SLVKAC--------------------GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM 149
           S++ A                     G+L    +   + +C+V           S LV+ 
Sbjct: 135 SVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYV-------SCASSPLVN- 186

Query: 150 YAKCGLPNNARAVFDSIK--LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTA 207
              C L   AR +FD      ++  +WT +++ Y R+     A E+ E         W A
Sbjct: 187 --SCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNA 244

Query: 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267
           ++SG V      +AF     M   G+ + D    +S++ A +N  +  +G+Q+H  V+  
Sbjct: 245 MISGYVHRGFYEEAFDLLRRMHSLGIQL-DEYTYTSVISAASNAGLFNIGRQVHAYVLRT 303

Query: 268 GYES----CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI------------- 310
             +      L ++NA++ +Y +C  ++ A+ +F +M  KD+VSW +I             
Sbjct: 304 VVQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVKDLVSWNAILSGCVNARRIEEA 363

Query: 311 ------------------IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
                             I G AQ+G  EE L L+++M   G++P +  + G I +CS +
Sbjct: 364 NSIFREMPVRSLLTWTVMISGLAQNGFGEEGLKLFNQMKLEGLEPCDYAYAGAIASCSVL 423

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           G +  G++L   +I+  G   SL     L+ + SR G ++ A+ +   MP+  D  +W A
Sbjct: 424 GSLDNGQQLHSQIIQ-LGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPY-VDSVSWNA 481

Query: 413 LLSACKHH 420
           +++A   H
Sbjct: 482 MIAALAQH 489



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 157/363 (43%), Gaps = 52/363 (14%)

Query: 116 GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWT 175
             L  T   + VHA  + S F    ++ + L+D Y K      AR +FD I   + V+ T
Sbjct: 7   AQLSHTSFARAVHAHILTSGFKPFPLIINRLIDHYCKSFNIPYARYLFDKIPKPDIVAAT 66

Query: 176 AMLSAYARSGRKKDAMEIFEQAP--VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233
            MLSAY+ +G  K A ++F   P  +R+   + A+++    S +   A   F++M+R G 
Sbjct: 67  TMLSAYSAAGNIKLAHQLFNATPMSIRDTVSYNAMITAFSHSHDGHAALQLFVQMKRLGF 126

Query: 234 DIVDPLVLSSIVGACANFAVLELG-KQIHGLVIALGYESCLFISNAIVDMYAKCS----- 287
            + DP   SS++GA +  A  E   +Q+H  V   G  S   + NA++  Y  C+     
Sbjct: 127 -VPDPFTFSSVLGALSLIADEETHCQQLHCEVFKWGALSVPSVLNALMSCYVSCASSPLV 185

Query: 288 -------------------------------------DIIAAKDIFGRMRRKDVVSWTSI 310
                                                D++AA+++   M     V+W ++
Sbjct: 186 NSCVLMAAARKLFDEAPPGRRDEPAWTTIIAGYVRNDDLVAARELLEGMTDHIAVAWNAM 245

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370
           I G    G  EE   L   M S G++ +E T+  +I A S+ GL   GR++   ++    
Sbjct: 246 ISGYVHRGFYEEAFDLLRRMHSLGIQLDEYTYTSVISAASNAGLFNIGRQVHAYVLRTV- 304

Query: 371 ITPS----LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
           + PS    L     L+ L +R G L EA  +   MP + D  +W A+LS C + R  E  
Sbjct: 305 VQPSGHFVLSVNNALITLYTRCGKLVEARRVFDKMPVK-DLVSWNAILSGCVNARRIEEA 363

Query: 427 TRV 429
             +
Sbjct: 364 NSI 366



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/163 (29%), Positives = 81/163 (49%), Gaps = 9/163 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH+QII+LG      + N LI  Y +C LV+ A  +   MP  D VSW +++ A  Q 
Sbjct: 430 QQLHSQIIQLGHDSSLSVGNALITMYSRCGLVEAADTVFLTMPYVDSVSWNAMIAALAQH 489

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ----VHACFVLSPFCD 138
               + I ++  ML  D L PD   F +++ AC   G  + G+     +  C+ ++P  D
Sbjct: 490 GHGVQAIQLYEKMLKEDIL-PDRITFLTILSACSHAGLVKEGRHYFDTMRVCYGITPEED 548

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSA 180
                S L+D+  + G+ + A+ V +S+  +     W A+L+ 
Sbjct: 549 H---YSRLIDLLCRAGMFSEAKNVTESMPFEPGAPIWEALLAG 588


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 219/569 (38%), Positives = 344/569 (60%), Gaps = 32/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT+I  Y K   ++ A  L +EMPQRD+ SW + ++ Y   N P++ + +F  M   ++ 
Sbjct: 157 NTMIVGYAKLGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERS 216

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             + F  +S + A  ++   RLGK++H   + +    D+VV                   
Sbjct: 217 SSNKFTLSSALAASAAIPCLRLGKEIHGYLIRTELNLDEVV------------------- 257

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
                       W+A+L  Y + G   +A  IF+Q   R++  WT ++    +     + 
Sbjct: 258 ------------WSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEG 305

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
           F  F ++ + GV   +    + ++ ACA+ A   LGK++HG ++  GY+   F  +A+V 
Sbjct: 306 FLLFRDLMQSGVR-PNEYTFAGVLNACADHAAEHLGKEVHGYMMHAGYDPGSFAISALVH 364

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY+KC +   A+ +F  M + D+VSWTS+IVG AQ+GQ +E L  ++ ++ +G KP++VT
Sbjct: 365 MYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPDEALHFFELLLQSGTKPDQVT 424

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           +VG++ AC+H GLV KG + F S+ E +G+  +  HY C++DLL+RSG   EAEN+I  M
Sbjct: 425 YVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACVIDLLARSGRFKEAENIIDNM 484

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P +PD+  WA+LL  C+ H N E+  R A  L  ++PE+P++YI L+N+YA+A +W  V+
Sbjct: 485 PVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPENPATYITLANIYANAGLWSEVA 544

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
            VRK M  M + K+PG S+IE  +  H+F  G+TSHP   +I E L EL  ++K  GYVP
Sbjct: 545 NVRKDMDNMGIVKKPGKSWIEIKRQVHVFLVGDTSHPKTSDIHEFLGELSKKIKEEGYVP 604

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           DT+ VLHD+E+++KE+ L +HSE+LAV +G++ + PGT ++V KNLR C DCH  +K IS
Sbjct: 605 DTNFVLHDVEEEQKEQNLVYHSEKLAVVFGIISTPPGTPIKVFKNLRTCVDCHTAIKYIS 664

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I +R+I VRD+ R+H F+DG CSC D+W
Sbjct: 665 KIVQRKITVRDSNRFHCFEDGSCSCKDYW 693



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/329 (31%), Positives = 174/329 (52%), Gaps = 2/329 (0%)

Query: 86  QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS 145
           QK +     +L     +P   V+++L+ AC    A  LG++VHA    S F     + + 
Sbjct: 68  QKRVKEAVELLHRTDHRPSARVYSTLIAACVRHRALELGRRVHAHTKASNFVPGVFISNR 127

Query: 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLW 205
           L+DMYAKCG   +A+ +FD +  ++  SW  M+  YA+ GR + A ++F++ P R+ F W
Sbjct: 128 LLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQRDNFSW 187

Query: 206 TALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265
            A +SG V      +A   F  M+R      +   LSS + A A    L LGK+IHG +I
Sbjct: 188 NAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGKEIHGYLI 247

Query: 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA 325
                    + +A++D+Y KC  +  A+ IF +M+ +DVVSWT++I    + G+ EE   
Sbjct: 248 RTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDGRREEGFL 307

Query: 326 LYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385
           L+ +++ +GV+PNE TF G++ AC+       G+++   M+   G  P     + L+ + 
Sbjct: 308 LFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMH-AGYDPGSFAISALVHMY 366

Query: 386 SRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           S+ G+   A  +   M  +PD  +W +L+
Sbjct: 367 SKCGNTRVARRVFNEM-HQPDLVSWTSLI 394


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/595 (39%), Positives = 357/595 (60%), Gaps = 9/595 (1%)

Query: 19  ALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           A   + +HA +++LG+ +   + ++L+ AY        A  L+ E      V+W ++++ 
Sbjct: 39  AAPARAVHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARALVGECDT--PVAWNALISG 96

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR---LGKQVHACFVLSP 135
           +N+     ++   F  M A     P    + S++ ACG    TR   LG QVH   V S 
Sbjct: 97  HNRGGRFGESCGSFVDM-ARAGAAPTPVTYVSVLSACGK--GTRDVLLGMQVHGRVVGSG 153

Query: 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
              D  V+++LVDMYA+C    +A  VFD +++++ VSWT++LS  AR G+  +A ++F+
Sbjct: 154 VLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFD 213

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
           + P R+   WTA++ G V +    +A   F EM+   V   D   + S++ ACA    LE
Sbjct: 214 RMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVS-ADEFTMVSVITACAQLGALE 272

Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
           +G+ +   +   G +   F+ NA++DMY+KC  I  A D+F  M  +D  +WT+II+G A
Sbjct: 273 MGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLA 332

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
            +G  EE + ++  M+     P+EVTF+G++ AC+H GLV KGR+ F SMIE Y I P++
Sbjct: 333 VNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNV 392

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
            HY C++DLL R+G + EA + I  MP  P+   W  LL+AC+ H N+E+G  VA  LL 
Sbjct: 393 VHYGCIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLE 452

Query: 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGET 495
           L PE+   YILLSN+YA    W+ V ++R  +    +KKEPG S IE     H F AG+ 
Sbjct: 453 LDPENSMVYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLIEMDGIIHEFVAGDQ 512

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKS 555
           SHP+  EI+  L  + +++   GY PD + V  ++ +KEK++ L+WHSE+LA+A+ LL S
Sbjct: 513 SHPMSKEIYSKLESIISDLNNVGYFPDVTEVFVEVAEKEKKKVLYWHSEKLAIAFALLSS 572

Query: 556 VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            P TV+R+VKNLR+C DCH  +K+ISR+  RE+VVRD TR+HHF+ G CSC D+W
Sbjct: 573 KPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKDYW 627


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  458 bits (1179), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/623 (37%), Positives = 366/623 (58%), Gaps = 55/623 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C++  +A   K +H   +K GL     + N L+  Y +C  +  A  L ++M +RD 
Sbjct: 116 LKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDV 175

Query: 70  VSWASILTAYNQA--NLPQKTISIFSTMLA-------------------LDKLQPDHFVF 108
           VSW++++ AY        Q++I  ++ M+A                    + + P+    
Sbjct: 176 VSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITM 235

Query: 109 ASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL 168
            SL+ +CG +GA +LGK++HA  + + F     + ++LVDMY KC               
Sbjct: 236 LSLIISCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKC--------------- 280

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID-AFYSFIE 227
                           G  + A  IF+    +++  WTA++S   Q+ N ID AF  F++
Sbjct: 281 ----------------GEIRSARAIFDSMKNKDVMTWTAMISAYAQA-NCIDYAFQLFVQ 323

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           MR  GV   + L + S++  CA    L++GK  H  +   G E  + +  A++DMYAKC 
Sbjct: 324 MRDNGVR-PNELTMVSLLSLCAVNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCG 382

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
           DI  A+ +F     +D+ +W  ++ G   HG  E+ L L+ EM + GVKPN++TF+G ++
Sbjct: 383 DISGAQRLFSEAIDRDICTWNVMMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALH 442

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           ACSH GLV +G+ LF+ MI D+G+ P ++HY C++DLL R+G LDEA  +I++MP  P+ 
Sbjct: 443 ACSHAGLVVEGKGLFEKMIHDFGLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNI 502

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
             W A+L+ACK H+N+ MG   A  LL+L+P++    +L+SN+YA+A  W  V+ +RK +
Sbjct: 503 AIWGAMLAACKIHKNSNMGELAARELLALEPQNCGYKVLMSNIYAAANRWNDVAGMRKAV 562

Query: 468 SVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
               +KKEPG S IE     H F  G+T+HPL ++I E+L E+  ++K  GY+PDTS VL
Sbjct: 563 KDTGIKKEPGMSSIEVNGLVHDFKMGDTAHPLIEKISEMLAEMSKKLKEAGYLPDTSVVL 622

Query: 528 HDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
           H+++++EKE  L +HSE+LA+A+GL+ + PGT +RVVKNLR+C DCH V K++S+I KR 
Sbjct: 623 HNIDEEEKETALNYHSEKLAMAFGLISTAPGTPIRVVKNLRICDDCHTVTKLLSKIYKRV 682

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           I+VRD  R+HHF++G CSC  +W
Sbjct: 683 IIVRDRNRFHHFREGSCSCGGYW 705



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 198/376 (52%), Gaps = 15/376 (3%)

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           R H + A  ++     + P+  ++ ++ M  LD ++ D F+  S++KAC  +   R+GK+
Sbjct: 72  RTHFNHAQQVSFSPFESHPRYALNTYTYMRKLD-IEVDSFIIPSVLKACSQISVARMGKE 130

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +H   V +    D  V ++L+ MY++CG   +AR +FD +  ++ VSW+ M+ AY     
Sbjct: 131 IHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMSERDVVSWSTMIRAY----- 185

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
               + +F     R++  WTA+++G ++  +  +    F+ M  E V   D  +LS I+ 
Sbjct: 186 ----ITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPNDITMLSLII- 240

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           +C     ++LGK++H  ++  G+   L ++ A+VDMY KC +I +A+ IF  M+ KDV++
Sbjct: 241 SCGFVGAVQLGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRSARAIFDSMKNKDVMT 300

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           WT++I   AQ    +    L+ +M   GV+PNE+T V L+  C+  G +  G K F + I
Sbjct: 301 WTAMISAYAQANCIDYAFQLFVQMRDNGVRPNELTMVSLLSLCAVNGALDMG-KWFHAYI 359

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
           +  G+   +   T L+D+ ++ G +  A+ L      + D  TW  +++    H   E  
Sbjct: 360 DKQGVEVDVILKTALIDMYAKCGDISGAQRLFSE-AIDRDICTWNVMMAGYGMHGYGEKA 418

Query: 427 TRVANHL--LSLKPED 440
            ++   +  L +KP D
Sbjct: 419 LKLFTEMETLGVKPND 434


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/601 (39%), Positives = 342/601 (56%), Gaps = 34/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+   +    K +H QI +LG      + N L+  Y KC  V+ A  + E +  R+ 
Sbjct: 176 LKACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNI 235

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S+++ Y Q  LP + + IF  M   + ++PD     S+++A   +     GK +H 
Sbjct: 236 VSWTSMISGYGQNGLPMEALRIFGQMRQRN-VKPDWIALVSVLRAYTDVEDLEQGKSIHG 294

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
           C V      +  +  SL  MYAKCG    AR+ FD +++ N + W AM+S YA++G   +
Sbjct: 295 CVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNE 354

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +F++   +N+                                  D + + S + ACA
Sbjct: 355 AVGLFQEMISKNI--------------------------------RTDSITVRSAILACA 382

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               L+L K +   +    Y + +F++ A++DM+AKC  +  A+++F R   KDVV W++
Sbjct: 383 QVGSLDLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSA 442

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +IVG   HG+ ++ + L+  M  AGV PN+VTFVGL+ AC+H GLV +G +LF SM + Y
Sbjct: 443 MIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSM-KYY 501

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI    QHY C++DLL RSGHL+EA + I  MP EP    W ALL ACK +R+  +G   
Sbjct: 502 GIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYA 561

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  L SL P +   Y+ LSN+YAS+ +W  V+KVR LM    + K+ GYS IE       
Sbjct: 562 AEQLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEINGKLQA 621

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F  G+ SHP   EIFE L  L+  +K  G++P   SVLHD+ Q+EKE  L  HSERLA+A
Sbjct: 622 FRVGDKSHPRFKEIFEELESLERRLKEAGFIPHIESVLHDLNQEEKEETLCNHSERLAIA 681

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           YGL+ + PGT LR+ KNLR C +CH   K+IS++  REIVVRDA R+HHFK+G CSC D+
Sbjct: 682 YGLISTAPGTTLRITKNLRACINCHSATKLISKLVNREIVVRDANRFHHFKNGVCSCRDY 741

Query: 610 W 610
           W
Sbjct: 742 W 742



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 118/402 (29%), Positives = 188/402 (46%), Gaps = 41/402 (10%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           +  +HAQ++  GL + G L    ++A      + YA  + +E P+     W +I+  Y+ 
Sbjct: 87  LNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSS 146

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
            N     I ++S M A   + PD F    ++KAC  +    +GK+VH       F  D  
Sbjct: 147 HNFFGDAIEMYSRMQA-SGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGFESDVF 205

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V++ LV +YAKCG    AR VF+ +  +N VSWT+M+S Y ++G   +A+ IF Q   RN
Sbjct: 206 VQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRN 265

Query: 202 LFL-WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           +   W ALVS L                 R   D+ D                LE GK I
Sbjct: 266 VKPDWIALVSVL-----------------RAYTDVED----------------LEQGKSI 292

Query: 261 HGLVIALG--YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           HG V+ +G  +E  L IS  +  MYAKC  ++ A+  F +M   +V+ W ++I G A++G
Sbjct: 293 HGCVVKMGLEFEPDLLIS--LTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNG 350

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
              E + L+ EM+S  ++ + +T    I AC+ VG +    K     I        +   
Sbjct: 351 YTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLA-KWMGDYINKTEYRNDVFVN 409

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           T L+D+ ++ G +D A  +      + D   W+A++     H
Sbjct: 410 TALIDMFAKCGSVDLAREVFDRT-LDKDVVVWSAMIVGYGLH 450



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 146/303 (48%), Gaps = 12/303 (3%)

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
            S   D  V K  L  ++A+  +     + F   K  N+ SW      YAR        +
Sbjct: 74  FSSLLDHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVNA-SWNIGEIGYAR--------K 124

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F++ P  ++FLW A++ G        DA   +  M+  GV+  D   L  ++ AC+   
Sbjct: 125 VFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVN-PDGFTLPCVLKACSGVP 183

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
           VLE+GK++HG +  LG+ES +F+ N +V +YAKC  +  A+ +F  +  +++VSWTS+I 
Sbjct: 184 VLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMIS 243

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G  Q+G   E L ++ +M    VKP+ +  V ++ A + V  + +G+ +   +++  G+ 
Sbjct: 244 GYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVK-MGLE 302

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
                   L  + ++ G +  A +    M   P+   W A++S    +  T     +   
Sbjct: 303 FEPDLLISLTAMYAKCGQVMVARSFFDQMEI-PNVMMWNAMISGYAKNGYTNEAVGLFQE 361

Query: 433 LLS 435
           ++S
Sbjct: 362 MIS 364


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 227/604 (37%), Positives = 349/604 (57%), Gaps = 6/604 (0%)

Query: 11  RVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHV 70
           + CA  +  +  K +H   I+ G      L N LID YGKC   + A  + E MP RD +
Sbjct: 86  KACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVI 145

Query: 71  SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC 130
           SW S+ + Y    L ++ +  F  M  L+  +P+    +S++ AC  L   + G++VH  
Sbjct: 146 SWTSMASCYVNCGLLREALGAFRKM-GLNGERPNSVTVSSILPACTDLKDLKSGREVHGF 204

Query: 131 FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
            V +    +  V S+LV+MYA C     A+ VFDS+  +++VSW  +++AY  +   +  
Sbjct: 205 VVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKG 264

Query: 191 MEIFEQAPVRNLFL----WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
           + +F +     + L    W A++ G +Q+     A      M+  G    + + ++S++ 
Sbjct: 265 LSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFK-PNQITITSVLP 323

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           AC N   L  GKQIHG +    +   L  + A+V MYAKC D+  ++ +F  M ++D VS
Sbjct: 324 ACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVS 383

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W ++I+ T+ HG  EE L L+ EMV +GV+PN VTF G++  CSH  LV +G  +F SM 
Sbjct: 384 WNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMS 443

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
            D+ + P   H++C++D+LSR+G L+EA   IK MP EP    W ALL  C+ ++N E+G
Sbjct: 444 RDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELG 503

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
              AN L  ++ ++P +Y+LLSN+  SA +W   S+ RKLM    V K PG S+I+    
Sbjct: 504 RIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWIQVRNR 563

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            H F  G+ S+   DEI+  L  +  +M+  GY+P+T  VL D++Q+EKE  L  HSE+L
Sbjct: 564 VHTFVVGDKSNDQSDEIYRFLDYMGEKMRIAGYLPNTDFVLQDVDQEEKEEVLCNHSEKL 623

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           AVA+G+L     + +RV KNLR+CGDCH  +K +++I   +I+VRD+ R+HHF+DG CSC
Sbjct: 624 AVAFGVLNLNGESSIRVFKNLRICGDCHNAIKFMAKIVGVKIIVRDSLRFHHFRDGLCSC 683

Query: 607 NDFW 610
            DFW
Sbjct: 684 QDFW 687



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 188/418 (44%), Gaps = 73/418 (17%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
            I  Y     +Q A HL +++PQ D  +W  +++A  +     + I  ++     + ++P
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D  +  S+ KAC SL      K+VH   +   FC D ++ ++L+DMY KC     AR VF
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVF 136

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           + +  ++ +SWT+M S Y   G  ++A+  F                             
Sbjct: 137 EGMPFRDVISWTSMASCYVNCGLLREALGAF----------------------------- 167

Query: 224 SFIEMRREGVDIVDP--LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
                R+ G++   P  + +SSI+ AC +   L+ G+++HG V+  G    +F+S+A+V+
Sbjct: 168 -----RKMGLNGERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVN 222

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVV-----------------------------------S 306
           MYA C  I  A+ +F  M R+D V                                   S
Sbjct: 223 MYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYAS 282

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W ++I G  Q+G+ E+ L +   M ++G KPN++T   ++ AC+++  +  G+++   + 
Sbjct: 283 WNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIF 342

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
             +     L   T L+ + ++ G L+ +  +   M  + D  +W  ++ A   H N E
Sbjct: 343 RHW-FFQDLTTTTALVFMYAKCGDLELSRRVFSMMT-KRDTVSWNTMIIATSMHGNGE 398



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/259 (25%), Positives = 130/259 (50%), Gaps = 2/259 (0%)

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
            +  Y+ SG  + A  +F++ P  +L  WT L+S L +    ++A   + + R +     
Sbjct: 17  FIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEP 76

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           D L+L S+  ACA+   +   K++H   I  G+ S + + NA++DMY KC     A+ +F
Sbjct: 77  DKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVF 136

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
             M  +DV+SWTS+       G   E L  + +M   G +PN VT   ++ AC+ +  + 
Sbjct: 137 EGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLK 196

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            GR++   ++ + G+  ++   + L+++ +    + +A+ +  +M    D  +W  L++A
Sbjct: 197 SGREVHGFVVRN-GMGGNVFVSSALVNMYASCLSIRQAQLVFDSMS-RRDTVSWNVLITA 254

Query: 417 CKHHRNTEMGTRVANHLLS 435
              ++  E G  V   ++S
Sbjct: 255 YFLNKECEKGLSVFGRMMS 273


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/623 (38%), Positives = 356/623 (57%), Gaps = 40/623 (6%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKC----DLVQYAHHLLEEMPQRDHVSWASILT--- 77
            HA  +K G      + N L+  Y +C     L+  A  + +++P++D  SW +++T   
Sbjct: 171 FHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYV 230

Query: 78  ----------------------AYN-------QANLPQKTISIFSTMLALDKLQPDHFVF 108
                                 AYN          L Q+ + +   M++   ++ D F +
Sbjct: 231 KNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVS-SGIELDEFTY 289

Query: 109 ASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL 168
            S+++AC +    +LGKQVHA +VL          +SLV +Y KCG  N ARA+F+ +  
Sbjct: 290 PSVIRACANARLLQLGKQVHA-YVLRREDFSFHFDNSLVTLYYKCGKFNEARAIFEKMPA 348

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228
           K+ VSW A+LS Y  SG   +A  IF++   +N+  W  ++SGL ++    +    F  M
Sbjct: 349 KDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCM 408

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
           +REG +  D    S  + +CA       G+Q H  ++ +G++S L   NA++ MYAKC  
Sbjct: 409 KREGFEPCD-YAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALITMYAKCGV 467

Query: 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
           +  A+ +F  M   D VSW ++I    QHG   E + +Y+EM+  G++P+ +TF+ ++ A
Sbjct: 468 VEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRITFLTVLTA 527

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           CSH GLV +GRK F SM   Y I P   HY  L+DLL RSG   EAE++I+++PF+P   
Sbjct: 528 CSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESLPFKPTAE 587

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
            W ALLS C+ H N E+G   A+ L  L PE   +Y+LLSN+YA+   W+ V++VRKLM 
Sbjct: 588 IWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMYAATGQWEEVARVRKLMR 647

Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH 528
              VKKE   S+IE     H F   +TSHP  + +++ L +L  EM+R GYVPDTS VLH
Sbjct: 648 DRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYKYLQDLGKEMRRLGYVPDTSFVLH 707

Query: 529 DMEQK-EKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
           D+E    KE  L  HSE++AVA+GL+K  PGT +R+ KNLR CGDCH   + +S++ +R+
Sbjct: 708 DVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSKVVQRD 767

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           I++RD  R+HHF++G+CSC +FW
Sbjct: 768 IILRDRKRFHHFRNGECSCGNFW 790



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 136/543 (25%), Positives = 233/543 (42%), Gaps = 83/543 (15%)

Query: 4   SHYLHRLRVCA--RHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
           + Y   LR+C   R       + +H  II  G   +  + N LID Y K   + YA  L 
Sbjct: 13  NRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLF 72

Query: 62  EEMPQ---------------------------------RDHVSWASILTAYNQANLPQKT 88
           +E+ +                                 RD V + +++T ++  N     
Sbjct: 73  DEISEPDKIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSA 132

Query: 89  ISIFSTMLALDKLQPDHFVFASLVKACG-SLGATRLGKQVHACFVLSPFCDDDVVKSSLV 147
           I++F  M   +  +PD F +AS++      +   +   Q HA  + S       V ++LV
Sbjct: 133 INLFCKM-KHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALV 191

Query: 148 DMYAKCG----LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR-NL 202
            +Y++C     L ++AR VFD I  K+  SWT M++ Y ++G      E+ +       L
Sbjct: 192 SVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKL 251

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             + A++SG V      +A      M   G+++ D     S++ ACAN  +L+LGKQ+H 
Sbjct: 252 VAYNAMISGYVNCGLYQEALEMVRRMVSSGIEL-DEFTYPSVIRACANARLLQLGKQVHA 310

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI------------ 310
            V+     S  F  N++V +Y KC     A+ IF +M  KD+VSW ++            
Sbjct: 311 YVLRREDFSFHF-DNSLVTLYYKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGE 369

Query: 311 -------------------IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
                              I G A++G  EE L L+  M   G +P +  F G I +C+ 
Sbjct: 370 AKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAV 429

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
           +G    G++ F + +   G   SL     L+ + ++ G ++EA+ + + MP   D  +W 
Sbjct: 430 LGAYCNGQQ-FHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPC-LDSVSWN 487

Query: 412 ALLSACKHHRNTEMGTRVANHLL--SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469
           AL++A   H +      V   +L   ++P D  +++ +    + A +   V + RK  + 
Sbjct: 488 ALIAALGQHGHGVEAVDVYEEMLKKGIRP-DRITFLTVLTACSHAGL---VDQGRKYFNS 543

Query: 470 MEV 472
           ME 
Sbjct: 544 MET 546


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/605 (37%), Positives = 359/605 (59%), Gaps = 39/605 (6%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   ++ C+        K +H  I   G      + NTL++ Y K +L++ A  L +EMP
Sbjct: 58  YSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMP 117

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +R+ VSW ++++AY+   L  K +     M   + ++P+ F ++S+++AC  L   R   
Sbjct: 118 ERNVVSWTTMISAYSN-KLNDKALKCLILMFR-EGVRPNMFTYSSVLRACDGLPNLR--- 172

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q+H   + +    D  V+S+L+D+Y+K                     W+ +        
Sbjct: 173 QLHCGIIKTGLESDVFVRSALIDVYSK---------------------WSDL-------- 203

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
              +A+ +F++ P R+L +W +++ G  Q+ +  +A   F  M+R G  + D   L+S++
Sbjct: 204 --DNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGF-LADQATLTSVL 260

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            AC   A+LELG+Q+H  V  L ++  L ++NA++DMY KC  +  A   F RM  KDV+
Sbjct: 261 RACTGLALLELGRQVH--VHVLKFDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVI 318

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SW++++ G AQ+G + + L L++ M  +G +PN +T +G+++ACSH GLV KG   F+SM
Sbjct: 319 SWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSM 378

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
            + +G+ P  +HY CL+DLL R+G LDEA  LI  M  EPD  TW  LL AC+ HRN ++
Sbjct: 379 KKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVDL 438

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
               A  ++ L+PED  +YILLSN+YA+   W+ V++VRK M+   ++K PG S+IE  K
Sbjct: 439 AIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVDK 498

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H+F  G+TSHP  +EI + L +L   +   GYVPDT+ VL D+E ++KE  L +HSE+
Sbjct: 499 QIHVFILGDTSHPKIEEIVQRLNDLIERVMGVGYVPDTNFVLQDLEGEQKEDSLRYHSEK 558

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+ +GL+       +R+ KNLR+CGDCH+  K++SR+  R IV+RD  RYHHF+DG CS
Sbjct: 559 LAIMFGLMNLSREKTVRIRKNLRICGDCHVFAKVVSRMEHRSIVIRDPIRYHHFQDGVCS 618

Query: 606 CNDFW 610
           C D+W
Sbjct: 619 CGDYW 623



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 116/244 (47%), Gaps = 36/244 (14%)

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M R GV   D +  S ++  C+    ++ GK++H  +   GYE  +F+ N +++MY K +
Sbjct: 46  MERHGV-FADAITYSELIKCCSARGAVQEGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFN 104

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQ--HGQAEETLALYDEMVSAGVKPNEVTFVGL 345
            +  A+D+F  M  ++VVSWT++I   +   + +A + L L   M   GV+PN  T+  +
Sbjct: 105 LLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLIL---MFREGVRPNMFTYSSV 161

Query: 346 IYACS--------HVGLVGKGRK----LFKSMIEDY----------GI-----TPSLQHY 378
           + AC         H G++  G +    +  ++I+ Y          G+     T  L  +
Sbjct: 162 LRACDGLPNLRQLHCGIIKTGLESDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVW 221

Query: 379 TCLLDLLSRSGHLDEAENLIKAMP---FEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
             ++   +++   +EA NL K M    F  D+ T  ++L AC      E+G +V  H+L 
Sbjct: 222 NSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK 281

Query: 436 LKPE 439
              +
Sbjct: 282 FDQD 285


>gi|449502858|ref|XP_004161763.1| PREDICTED: uncharacterized LOC101222622 [Cucumis sativus]
          Length = 2355

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/568 (40%), Positives = 343/568 (60%), Gaps = 34/568 (5%)

Query: 71  SWASILTAYNQANLPQKTISIFSTMLAL-DKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           ++ ++L A++Q N    TIS F+  L L +   PD + F S++KAC  L     G++VH 
Sbjct: 92  AYNALLKAFSQHNAWHTTISYFNNQLVLPNAPNPDEYTFTSVLKACAGLAQVLEGQKVH- 150

Query: 130 CFVLSPFCDDDV-VKSSLVDMYAKCG-------------------------------LPN 157
           CFV    C+ ++ V++SLVD+Y K G                               + +
Sbjct: 151 CFVTKYGCESNLFVRNSLVDLYFKVGCNCIAQKLFDEMVVRDVVSWNTLISGYCFSGMVD 210

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
            AR VFD +  KN VSW+ M+S YAR G  ++A ++FE  P+RN+  W A+++G  Q+  
Sbjct: 211 KARMVFDGMMEKNLVSWSTMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEK 270

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             DA   F +M+ EG    + + L S++ ACA+   L+LGK IH  +     E  LF+ N
Sbjct: 271 YADAIELFRQMQHEGGLAPNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGN 330

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           A+ DMYAKC  ++ AK +F  M  +DV+SW+ II+G A +G A E    + EM+  G++P
Sbjct: 331 ALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAFNFFAEMIEDGLEP 390

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           N+++F+GL+ AC+H GLV KG + F  M + YGITP ++HY C++DLLSR+G LD+AE+L
Sbjct: 391 NDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGCVVDLLSRAGRLDQAESL 450

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           I +MP +P+   W ALL  C+ +++ E G RV   +L L      S + L+NVYAS    
Sbjct: 451 INSMPMQPNVIVWGALLGGCRIYKDAERGERVVWRILELDSNHSGSLVYLANVYASMGRL 510

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
              +  R  M   +  K PG S+IE     + F+ G++SHP    I+ ++ EL  +MK  
Sbjct: 511 DDAASCRLRMRDNKSMKTPGCSWIEINNSVYEFFMGDSSHPQSLRIYSMIRELKWKMKVA 570

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GY P T  V+H+++++EKE  L  HSE+LA+A+GL+ +  GT +R+VKNLRVC DCH  +
Sbjct: 571 GYKPKTDLVIHNIDEEEKEDALSTHSEKLALAFGLINTSEGTTIRIVKNLRVCNDCHDAI 630

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCS 605
           K+IS+I +REIVVRD +R+HHFKDGKCS
Sbjct: 631 KIISKIVEREIVVRDRSRFHHFKDGKCS 658



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/288 (22%), Positives = 122/288 (42%), Gaps = 46/288 (15%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           +T+I  Y +   ++ A  L E MP R+ VSW +++  Y Q       I +F  M     L
Sbjct: 228 STMISGYARVGNLEEARQLFENMPMRNVVSWNAMIAGYAQNEKYADAIELFRQMQHEGGL 287

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P+     S++ AC  LGA  LGK +H     +       + ++L DMYAKCG    A+ 
Sbjct: 288 APNDVTLVSVLSACAHLGALDLGKWIHRFIRRNKIEVGLFLGNALADMYAKCGCVLEAKG 347

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF  +  ++ +SW+ ++   A  G                                  +A
Sbjct: 348 VFHEMHERDVISWSIIIMGLAMYGYAN-------------------------------EA 376

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG-------KQIHGLVIALGYESCLF 274
           F  F EM  +G++  D +    ++ AC +  +++ G        Q++G+   + +  C  
Sbjct: 377 FNFFAEMIEDGLEPND-ISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEHYGC-- 433

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAE 321
               +VD+ ++   +  A+ +   M  + +V+ W +++ G   +  AE
Sbjct: 434 ----VVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGGCRIYKDAE 477



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 13/156 (8%)

Query: 30  IKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTI 89
           I++GL     L N L D Y KC  V  A  +  EM +RD +SW+ I+          +  
Sbjct: 322 IEVGLF----LGNALADMYAKCGCVLEAKGVFHEMHERDVISWSIIIMGLAMYGYANEAF 377

Query: 90  SIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ----VHACFVLSPFCDDDVVKSS 145
           + F+ M+  D L+P+   F  L+ AC   G    G +    +   + ++P  +       
Sbjct: 378 NFFAEMIE-DGLEPNDISFMGLLTACTHAGLVDKGLEYFDMMPQVYGITPKIEH---YGC 433

Query: 146 LVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
           +VD+ ++ G  + A ++ +S+ ++ N + W A+L  
Sbjct: 434 VVDLLSRAGRLDQAESLINSMPMQPNVIVWGALLGG 469


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 236/588 (40%), Positives = 358/588 (60%), Gaps = 34/588 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  +IK GL     + N++++ Y K  +V  A  + + M  R+ VSW S++  +    L
Sbjct: 215 VHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGL 274

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
             +   +F  M  L+ ++    +FA+++K C ++      KQ+H C V+    D D+   
Sbjct: 275 DLEAFELFYRM-RLEGVKLTQTIFATVIKLCANIKEMSFAKQLH-CQVIKNGSDFDL--- 329

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF-EQAPVRNLF 203
                               +IK       TA++ AY++     DA ++F     V+N+ 
Sbjct: 330 --------------------NIK-------TALMVAYSKCSEIDDAFKLFCMMHGVQNVV 362

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN-FAVLELGKQIHG 262
            WTA++SG VQ+     A   F +MRRE     +    SS++ ACA   A +E GKQ H 
Sbjct: 363 SWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHS 422

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             I  G+ + L +S+A+V MYAK  +I +A ++F R   +D+VSW S+I G AQHG  ++
Sbjct: 423 CSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKK 482

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
           +L +++EM S  ++ + +TF+G+I AC+H GLV +G++ F  M++DY I P+++HY+C++
Sbjct: 483 SLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMV 542

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DL SR+G L++A +LI  MPF      W  LL+AC+ H N ++G   A  L+SL+P+D +
Sbjct: 543 DLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQDSA 602

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y+LLSN+YA+A  WQ  +KVRKLM + +VKKE GYS+IE    +  F AG+ SHP  D 
Sbjct: 603 AYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKTFSFMAGDLSHPQSDR 662

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L EL   +K  GY PDT  VLHD+E++ KE  L  HSERLA+A+GL+ + PGT ++
Sbjct: 663 IYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLAIAFGLIATPPGTPIQ 722

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +VKNLRVCGDCH V+K+IS+I  R+IVVRD+ R+HHFK G CSC D+W
Sbjct: 723 IVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCGDYW 770



 Score =  184 bits (468), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 119/413 (28%), Positives = 210/413 (50%), Gaps = 36/413 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+VC      +  K +H Q IK G  +   +  +L+D Y K + V+    + +EM  ++ 
Sbjct: 99  LKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNV 158

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S+L  Y Q  L ++ + +FS M  L+ ++P+ F FA+++    + GA   G QVH 
Sbjct: 159 VSWTSLLAGYRQNGLNEQALKLFSQM-QLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHT 217

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + S       V +S+V+MY+K  + ++A+AVFDS++ +N+VSW +M++ +  +G    
Sbjct: 218 MVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGL--- 274

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
                                       +++AF  F  MR EGV +    + ++++  CA
Sbjct: 275 ----------------------------DLEAFELFYRMRLEGVKLTQT-IFATVIKLCA 305

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-KDVVSWT 308
           N   +   KQ+H  VI  G +  L I  A++  Y+KCS+I  A  +F  M   ++VVSWT
Sbjct: 306 NIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWT 365

Query: 309 SIIVGTAQHGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           +II G  Q+G+ +  + L+ +M    GV+PNE TF  ++ AC+      +  K F S   
Sbjct: 366 AIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSI 425

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
             G + +L   + L+ + ++ G+++ A  + K    + D  +W +++S    H
Sbjct: 426 KSGFSNALCVSSALVTMYAKRGNIESANEVFKRQ-VDRDLVSWNSMISGYAQH 477



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 195/416 (46%), Gaps = 40/416 (9%)

Query: 56  YAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115
           ++  L +E PQ+       +L  +++ +  ++ +++F   L       D    + ++K C
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLF-LGLRRSGSPTDGSSLSCVLKVC 102

Query: 116 GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWT 175
           G L    +GKQVH   +   F +D  V +SLVDMY K     +   VFD +++KN VSWT
Sbjct: 103 GCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWT 162

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
           ++L+ Y ++G  + A+++F Q                               M+ EG+  
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQ-------------------------------MQLEGIK- 190

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
            +P   ++++G  A    +E G Q+H +VI  G +S +F+ N++V+MY+K   +  AK +
Sbjct: 191 PNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAV 250

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
           F  M  ++ VSW S+I G   +G   E   L+  M   GVK  +  F  +I  C+++  +
Sbjct: 251 FDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEM 310

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
              ++L   +I++ G    L   T L+   S+   +D+A  L   M    +  +W A++S
Sbjct: 311 SFAKQLHCQVIKN-GSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIIS 369

Query: 416 ACKHHRNTEMGTRVANHLLSLKPE---DPSSYILLSNVYASAAMWQHVSKVRKLMS 468
               +  T+   R  N    ++ E   +P+ +   S + A AA    V + ++  S
Sbjct: 370 GYVQNGRTD---RAMNLFCQMRREEGVEPNEFTFSSVLNACAAPTASVEQGKQFHS 422


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 228/590 (38%), Positives = 347/590 (58%), Gaps = 35/590 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNT--LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           K +HA +I+   +++  +P T  L+D Y KC  +  A  L   + Q+  VSW +++    
Sbjct: 215 KAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCI 274

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           ++N  ++   +F  M   + + P+     SL+  CG  GA +LGKQ+HA  + + F    
Sbjct: 275 RSNRLEEGTKLFIRMQE-ENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSL 333

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            + ++LVDMY KC    NARA                               +F+    R
Sbjct: 334 ALATALVDMYGKCSDIRNARA-------------------------------LFDSTQNR 362

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           ++ +WTA++S   Q+     AF  F +MR  GV     + + S++  CA    L+LGK +
Sbjct: 363 DVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPT-KVTIVSLLSLCAVAGALDLGKWV 421

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H  +     E    ++ A+VDMYAKC DI AA  +F     +D+  W +II G A HG  
Sbjct: 422 HSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYG 481

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           EE L ++ EM   GVKPN++TF+GL++ACSH GLV +G+KLF+ M+  +G+ P ++HY C
Sbjct: 482 EEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGC 541

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DLL R+G LDEA  +IK+MP +P+   W AL++AC+ H+N ++G   A  LL ++PE+
Sbjct: 542 MVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPEN 601

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
               +L+SN+YA+A  W   + VRK M  + +KKEPG+S IE     H F  G+ SHP  
Sbjct: 602 CGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGDQSHPQI 661

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
             I E+L E+  ++   GYVPDTS+VL +++++EKE  L +HSE+LA+A+GL+ + P T 
Sbjct: 662 RRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLISTAPSTP 721

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +R+VKNLRVC DCH   K++S+I  R I+VRD  R+HHF++G CSC D+W
Sbjct: 722 IRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDYW 771



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 114/415 (27%), Positives = 206/415 (49%), Gaps = 41/415 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C +       K +H  ++K GL +   + N L+  YG+C  V+YA  + ++M +RD 
Sbjct: 101 LKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDV 160

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW++++ + ++       + +   M  + +++P      S+V         R+GK +HA
Sbjct: 161 VSWSTMIRSLSRNKEFDMALELIREMNFM-QVRPSEVAMVSMVNLFADTANMRMGKAMHA 219

Query: 130 CFVLSPFCDDDV---VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
            +V+    ++ +     ++L+DMYAKCG    AR +F+ +  K  VSWTAM++   RS R
Sbjct: 220 -YVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNR 278

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
            ++  ++F +    N+F             NEI                     + S++ 
Sbjct: 279 LEEGTKLFIRMQEENIF------------PNEI--------------------TMLSLIV 306

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
            C     L+LGKQ+H  ++  G+   L ++ A+VDMY KCSDI  A+ +F   + +DV+ 
Sbjct: 307 ECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMI 366

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           WT+++   AQ    ++   L+D+M ++GV+P +VT V L+  C+  G +  G K   S I
Sbjct: 367 WTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG-KWVHSYI 425

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENL-IKAMPFEPDEPTWAALLSACKHH 420
           +   +       T L+D+ ++ G ++ A  L I+A+    D   W A+++    H
Sbjct: 426 DKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAI--SRDICMWNAIITGFAMH 478



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 156/315 (49%), Gaps = 38/315 (12%)

Query: 105 HFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVF 163
           +F+  S++KACG +  T+LGK++H  FVL    D DV V ++L+ MY +C     AR VF
Sbjct: 94  NFMAPSVLKACGQVSWTQLGKEIHG-FVLKKGLDRDVFVGNALMLMYGECACVEYARLVF 152

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           D +  ++ VSW+ M+ + +R+     A+E+  +                           
Sbjct: 153 DKMMERDVVSWSTMIRSLSRNKEFDMALELIRE--------------------------M 186

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI--SNAIVD 281
           +F+++R   V +V      S+V   A+ A + +GK +H  VI       + +  + A++D
Sbjct: 187 NFMQVRPSEVAMV------SMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLD 240

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MYAKC  +  A+ +F  + +K VVSWT++I G  +  + EE   L+  M    + PNE+T
Sbjct: 241 MYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEIT 300

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
            + LI  C   G +  G++L   ++ + G + SL   T L+D+  +   +  A  L  + 
Sbjct: 301 MLSLIVECGFTGALQLGKQLHAYILRN-GFSVSLALATALVDMYGKCSDIRNARALFDST 359

Query: 402 PFEPDEPTWAALLSA 416
               D   W A+LSA
Sbjct: 360 Q-NRDVMIWTAMLSA 373



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 112/213 (52%), Gaps = 15/213 (7%)

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           S++ AC   +  +LGK+IHG V+  G +  +F+ NA++ MY +C+ +  A+ +F +M  +
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           DVVSW+++I   +++ + +  L L  EM    V+P+EV  V ++   +    +  G+ + 
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMH 218

Query: 363 KSMI-----EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417
             +I     E  G+  +    T LLD+ ++ GHL  A  L   +  +    +W A+++ C
Sbjct: 219 AYVIRNSNNEHMGVPTT----TALLDMYAKCGHLGLARQLFNGLT-QKTVVSWTAMIAGC 273

Query: 418 KHHRNTEMGTRVANHLLSLKPED--PSSYILLS 448
                 E GT++    + ++ E+  P+   +LS
Sbjct: 274 IRSNRLEEGTKL---FIRMQEENIFPNEITMLS 303


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/595 (37%), Positives = 348/595 (58%), Gaps = 38/595 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +  H Q +  G      + + L+D Y KC  ++ A  L +E+  R+ VSW S++T Y Q 
Sbjct: 172 RQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQN 231

Query: 83  NLPQKTISIFSTMLALD-------KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP 135
           +   + + +F   L  +       ++  D     S++ AC  +    + + VH   +   
Sbjct: 232 DDAHRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRG 291

Query: 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
           F  D  V+++L+D YAKCG    +R VFD +  ++ +SW ++++ YA++G   ++MEIF 
Sbjct: 292 FEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFH 351

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
           +                               M ++G    + + LS+++ ACA+     
Sbjct: 352 R-------------------------------MVKDGEINYNAVTLSAVLLACAHSGSQR 380

Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
           LGK IH  VI +G ES +F+  +I+DMY KC  +  A+  F RMR K+V SW++++ G  
Sbjct: 381 LGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYG 440

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
            HG A+E L ++ EM  AGVKPN +TFV ++ ACSH GL+ +G   FK+M  ++ + P +
Sbjct: 441 MHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGV 500

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
           +HY C++DLL R+G+L EA +LIK M   PD   W ALL AC+ H+N ++G   A  L  
Sbjct: 501 EHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFE 560

Query: 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGET 495
           L P++   Y+LLSN+YA A  W+ V ++R LM    + K PG+S ++     H+F  G+ 
Sbjct: 561 LDPKNCGYYVLLSNIYADAGRWEDVERMRILMKNSGLVKPPGFSLVDIKGRVHVFLVGDR 620

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKS 555
            HP  ++I+E L +L  +++  GYVPD +SVLHD+  +EKE  L  HSE+LAVA+G++ +
Sbjct: 621 EHPQHEKIYEYLEKLSMKLQEVGYVPDMTSVLHDVGHEEKEMVLRVHSEKLAVAFGIMNT 680

Query: 556 VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           VPGT + ++KNLRVCGDCH  +K IS+I  REIVVRD+ R+HHF+DG CSC D+W
Sbjct: 681 VPGTTIHIIKNLRVCGDCHTAIKFISKIVDREIVVRDSKRFHHFRDGLCSCGDYW 735



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 197/388 (50%), Gaps = 34/388 (8%)

Query: 71  SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC 130
           SW S++    ++    + +  FS+M  L  L+P+   F   +K+C +L     G+Q H  
Sbjct: 119 SWNSVIAELARSGDSVEALRAFSSMRKL-SLKPNRSTFPCAIKSCSALLDLHSGRQAHQQ 177

Query: 131 FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
            ++  F  D  V S+LVDMY+KCG   +AR +FD I  +N VSWT+M++ Y ++     A
Sbjct: 178 ALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRA 237

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
           + +F++  V              +S +E D           G   VDP+ + S++ AC+ 
Sbjct: 238 LLLFKEFLVE-------------ESGSEGD-----------GEVCVDPIAMVSVLSACSR 273

Query: 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
            +   + + +HG +I  G+E  L + N ++D YAKC ++  ++ +F  M  +DV+SW SI
Sbjct: 274 VSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSI 333

Query: 311 IVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           I   AQ+G + E++ ++  MV  G +  N VT   ++ AC+H G    G+ +   +I+  
Sbjct: 334 IAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIK-M 392

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G+  ++   T ++D+  + G ++ A      M  E +  +W+A+++    H + +    V
Sbjct: 393 GLESNVFVGTSIIDMYCKCGKVEMARKAFDRMR-EKNVKSWSAMVAGYGMHGHAKEALEV 451

Query: 430 --ANHLLSLKPEDPSSYILLSNVYASAA 455
               ++  +KP    +YI   +V A+ +
Sbjct: 452 FYEMNMAGVKP----NYITFVSVLAACS 475



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 140/318 (44%), Gaps = 42/318 (13%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C+R       + +H  +IK G      + NTL+DAY KC  +  +  + + M +RD 
Sbjct: 268 LSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELGVSRRVFDGMAERDV 327

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW SI+  Y Q  +  +++ IF  M+   ++  +    ++++ AC   G+ RLGK +H 
Sbjct: 328 ISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHD 387

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +      +  V +S++DMY KCG    AR  FD ++ KN  SW+AM++ Y   G  K+
Sbjct: 388 QVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKE 447

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+E+                               F EM   GV   + +   S++ AC+
Sbjct: 448 ALEV-------------------------------FYEMNMAGVK-PNYITFVSVLAACS 475

Query: 250 NFAVLELG-----KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKD 303
           +  +LE G        H   +  G E        +VD+  +   +  A D+   M+ R D
Sbjct: 476 HAGLLEEGWHWFKAMSHEFDVEPGVEH----YGCMVDLLGRAGYLKEAFDLIKGMKLRPD 531

Query: 304 VVSWTSIIVGTAQHGQAE 321
            V W +++     H   +
Sbjct: 532 FVVWGALLGACRMHKNVD 549



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 148/341 (43%), Gaps = 67/341 (19%)

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           N+F W ++++ L +S + ++A  +F  MR+  +   +       + +C+    L  G+Q 
Sbjct: 116 NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLK-PNRSTFPCAIKSCSALLDLHSGRQA 174

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H   +  G+E  LF+S+A+VDMY+KC ++  A+ +F  +  +++VSWTS+I G  Q+  A
Sbjct: 175 HQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDA 234

Query: 321 EETLALYDEMV-----SAG---VKPNEVTFVGLIYACSHV-------------------- 352
              L L+ E +     S G   V  + +  V ++ ACS V                    
Sbjct: 235 HRALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEG 294

Query: 353 ---------------GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA--- 394
                          G +G  R++F  M E   I+     +  ++ + +++G   E+   
Sbjct: 295 DLGVENTLMDAYAKCGELGVSRRVFDGMAERDVIS-----WNSIIAVYAQNGMSTESMEI 349

Query: 395 -ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453
              ++K      +  T +A+L AC H  +  +G  + + ++ +  E        SNV+  
Sbjct: 350 FHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLE--------SNVFVG 401

Query: 454 AA---MWQHVSKV---RKLMSVMEVKKEPGYSYIEFGKGSH 488
            +   M+    KV   RK    M  K    +S +  G G H
Sbjct: 402 TSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMH 442



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 14/199 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K +H Q+IK+GL     +  ++ID Y KC  V+ A    + M +++ 
Sbjct: 370 LLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNV 429

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
            SW++++  Y      ++ + +F  M  +  ++P++  F S++ AC   G    G    K
Sbjct: 430 KSWSAMVAGYGMHGHAKEALEVFYEM-NMAGVKPNYITFVSVLAACSHAGLLEEGWHWFK 488

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARS 184
            +   F + P  +       +VD+  + G    A  +   +KL+ + V W A+L A  R 
Sbjct: 489 AMSHEFDVEPGVEH---YGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALLGA-CRM 544

Query: 185 GRKKDAMEIFEQAPVRNLF 203
            +  D  EI      R LF
Sbjct: 545 HKNVDLGEI----SARKLF 559



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 2/116 (1%)

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
           + +V SW S+I   A+ G + E L  +  M    +KPN  TF   I +CS +  +  GR+
Sbjct: 114 KTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQ 173

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             +  +  +G  P L   + L+D+ S+ G L +A  L   +    +  +W ++++ 
Sbjct: 174 AHQQAL-IFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR-NIVSWTSMITG 227


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/593 (38%), Positives = 353/593 (59%), Gaps = 38/593 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   +K GL     + N+L++ Y K     +A  +  +M   D +SW S++++  Q+
Sbjct: 306 KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 365

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLV-----KACGSLGATRLGKQVHACFVLSPFC 137
           +L ++++++F  +L  + L+PDHF  AS+      KACG L     GKQ+HA  + + F 
Sbjct: 366 SLEEESVNLFIDLLH-EGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIKAGFD 424

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D  V S ++DMY KCG   NA  VF+ I   + V+W                       
Sbjct: 425 SDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAW----------------------- 461

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
                   T+++SG V + NE  A   +  MR+  V + D    ++++ A +    LE G
Sbjct: 462 --------TSMISGCVDNGNEDQALRIYHRMRQSRV-MPDEYTFATLIKASSCVTALEQG 512

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           +Q+H  VI L   S  F+  ++VDMYAKC +I  A  +F +M  +++  W +++VG AQH
Sbjct: 513 RQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQH 572

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G AEE + L+  M S G++P+ V+F+G++ ACSH GL  +  +   SM  DYGI P ++H
Sbjct: 573 GNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEH 632

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
           Y+CL+D L R+G + EA+ +I+ MPF+       ALL AC+   + E G RVA  L +L+
Sbjct: 633 YSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALE 692

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
           P D ++Y+LLSN+YA+A  W  V+  RK+M    VKK+PG+S+I+     H+F   + SH
Sbjct: 693 PFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDDRSH 752

Query: 498 PLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVP 557
           P  D I++ + E+   ++  GYVPDT  VL D+E +EKER L++HSE+LA+AYGL+ +  
Sbjct: 753 PQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLISTPA 812

Query: 558 GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            T +RV+KNLRVCGDCH  +K IS++ +REIV+RDA R+HHF+DG CSC D+W
Sbjct: 813 STTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 865



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 121/463 (26%), Positives = 208/463 (44%), Gaps = 56/463 (12%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR        L  K  HA+I+  G      L N L+  Y KC  +  A  + +  P+RD 
Sbjct: 84  LRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDL 143

Query: 70  VSWASILTAY------NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           V+W +IL AY      N  N  Q+ + +F  +L            A ++K C + G    
Sbjct: 144 VTWNAILGAYAASVDSNDGN-AQEGLHLFR-LLRASLGSTTRMTLAPVLKLCLNSGCLWA 201

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
            + VH   +      D  V  +LV++Y+KCG   +AR +FD ++ ++ V W  ML  Y +
Sbjct: 202 AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQ 261

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            G +K+A ++F                                E  R G+   D   +  
Sbjct: 262 LGLEKEAFQLFS-------------------------------EFHRSGLR-PDEFSVQL 289

Query: 244 IVGAC--ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           I+  C  A    LELGKQ+HG+ +  G +S + ++N++V+MY+K      A+++F  M+ 
Sbjct: 290 ILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKH 349

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY-----ACSHVGLVG 356
            D++SW S+I   AQ    EE++ L+ +++  G+KP+  T   +       AC  + L+ 
Sbjct: 350 LDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLD 409

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE---NLIKAMPFEPDEPTWAAL 413
           +G+++    I+  G    L   + +LD+  + G +  A    N I A    PD+  W ++
Sbjct: 410 QGKQIHAHAIK-AGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISA----PDDVAWTSM 464

Query: 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           +S C  + N +   R+  H +      P  Y   + + AS+ +
Sbjct: 465 ISGCVDNGNEDQALRIY-HRMRQSRVMPDEYTFATLIKASSCV 506


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  456 bits (1174), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/595 (39%), Positives = 357/595 (60%), Gaps = 8/595 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL--EEMPQRDHVSWASILTAY 79
           +K +HA II+ GL Q   +   LI    K D+   ++ LL   ++   +   W +++  Y
Sbjct: 58  IKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGY 117

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL-SPFCD 138
               L  ++ + F T +  D + P  F F++L KACG+     LGKQVHA  +L   F  
Sbjct: 118 ALQGLLSESTN-FYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  V +S++D+Y KCG    AR VFD +  ++ VSWT ++ AYA+ G  + A  +F+  P
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP 236

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
           ++++  WTA+V+G  Q+    +A   F +M+  G++  D + L+ ++ ACA    ++   
Sbjct: 237 LKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGME-TDEVTLAGVISACAQLGAVKHAN 295

Query: 259 QIHGLV--IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
            I  +      G    + + +A++DMY+KC     A  +F  M+ ++V S++S+I+G A 
Sbjct: 296 WIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAM 355

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           HG+A   L L+ +M+   ++PN+VTF+G++ ACSH GLV +GR+LF  M + +G+ PS  
Sbjct: 356 HGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPD 415

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
           HY C++DLL R+G L+EA +L+K MP EP+   W ALL AC+ H N ++    AN L  L
Sbjct: 416 HYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKL 475

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS-HIFYAGET 495
           +P    +YILLSN+YASA  W+ VSK+RK++     KK PG S+ E   G  H F+AG+T
Sbjct: 476 EPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDT 535

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKS 555
           +HP   EI + L +L   ++  GY P+  S  +D+   EKER L  HSE+LA+AYGLL +
Sbjct: 536 THPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCT 595

Query: 556 VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             G  ++++KN+R+C DCH VM   S IT REI+VRD  R+HHF +G CSC +FW
Sbjct: 596 EAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|297838665|ref|XP_002887214.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333055|gb|EFH63473.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 740

 Score =  456 bits (1173), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/619 (39%), Positives = 343/619 (55%), Gaps = 65/619 (10%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGK-------------------------------C 51
           K +H Q+IKLG   Y  + + L+D Y K                               C
Sbjct: 156 KQIHGQVIKLGFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLAC 215

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
            +++ A  L   M ++D VSW++++    Q  + ++ I  F  M  ++ L+ D + F S+
Sbjct: 216 GMIEDALQLFRGM-EKDSVSWSAMIKGLAQNGMEKEAIECFREM-KIEGLKMDQYPFGSV 273

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           + ACG LGA   G+Q+HAC + +   D   V S+L+DMY KC   + A+ VFD +K KN 
Sbjct: 274 LPACGGLGAINDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNV 333

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           VS                               WTA+V G  Q+    +A   F++M+R 
Sbjct: 334 VS-------------------------------WTAMVVGYGQTGRAGEAVKIFLDMQRS 362

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
           G+D  D   L   + ACAN + LE G Q HG  I  G    + +SN++V +Y KC DI  
Sbjct: 363 GID-PDHYTLGQAISACANISSLEEGSQFHGKAITAGLIHYITVSNSLVTLYGKCGDIDD 421

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           +  +F  M  +D VSWT+++   AQ G+A E + L+D+MV  G+KP+ VT  G+I ACS 
Sbjct: 422 STRLFNEMNVRDEVSWTAMVSAYAQFGRAVEAIQLFDKMVQLGLKPDGVTLTGVISACSR 481

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
            GLV KG++ F+ MI +YGI PS  HY+C++DL SRSG ++EA   I  MPF PD   W 
Sbjct: 482 AGLVEKGQRYFELMINEYGIVPSNGHYSCMIDLFSRSGRIEEAMGFINGMPFRPDAIGWT 541

Query: 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
            LLSAC++  N E+G   A  L+ L P  P+ Y LLS++YAS   W  V+++R+ M    
Sbjct: 542 TLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDCVAQLRRGMKEKN 601

Query: 472 VKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDME 531
           V+KEPG S+I++    H F A + S P  D+I+  L EL  ++   GY PDTS V HD+E
Sbjct: 602 VRKEPGQSWIKWKGKLHSFSADDESSPYSDQIYAKLEELYQKIIDNGYKPDTSFVHHDVE 661

Query: 532 QKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVR 591
           +  K + L  HSERLA+A+GL+    G  +RV KNLRVC DCH   K IS +T REI+VR
Sbjct: 662 EAVKIKMLNCHSERLAIAFGLIFVPSGLPIRVGKNLRVCVDCHNATKHISSVTGREILVR 721

Query: 592 DATRYHHFKDGKCSCNDFW 610
           DA R+H FKDG CSC DFW
Sbjct: 722 DAVRFHRFKDGTCSCGDFW 740



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 231/462 (50%), Gaps = 19/462 (4%)

Query: 16  HQIALTVKTLHAQIIKLGLHQYGPLP-NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWAS 74
           H  AL   +++A+ +  G+ Q      N L+ AY K   +       E++P RD V+W  
Sbjct: 46  HAYALIRSSIYARRVFDGIPQPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNV 105

Query: 75  ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134
           ++  Y+ + L    +  ++TM+             +++K   S G   LGKQ+H   +  
Sbjct: 106 LIEGYSLSGLVGAAVKAYNTMMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKL 165

Query: 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
            F    +V S L+DMY+K G  ++A+ VF  +  +N+V +  ++      G  +DA+++F
Sbjct: 166 GFESYLLVGSPLLDMYSKVGCISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLF 225

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
            +   ++   W+A++ GL Q+  E +A   F EM+ EG+ + D     S++ AC     +
Sbjct: 226 -RGMEKDSVSWSAMIKGLAQNGMEKEAIECFREMKIEGLKM-DQYPFGSVLPACGGLGAI 283

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
             G+QIH  +I    +  +++ +A++DMY KC  +  AK +F RM++K+VVSWT+++VG 
Sbjct: 284 NDGRQIHACIIRTNLQDHIYVGSALIDMYCKCKCLHYAKTVFDRMKQKNVVSWTAMVVGY 343

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
            Q G+A E + ++ +M  +G+ P+  T    I AC+++  + +G     S      IT  
Sbjct: 344 GQTGRAGEAVKIFLDMQRSGIDPDHYTLGQAISACANISSLEEG-----SQFHGKAITAG 398

Query: 375 LQHY----TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVA 430
           L HY      L+ L  + G +D++  L   M    DE +W A++SA           ++ 
Sbjct: 399 LIHYITVSNSLVTLYGKCGDIDDSTRLFNEMNVR-DEVSWTAMVSAYAQFGRAVEAIQLF 457

Query: 431 NHL--LSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470
           + +  L LKP+     + L+ V ++ +    V K ++   +M
Sbjct: 458 DKMVQLGLKPDG----VTLTGVISACSRAGLVEKGQRYFELM 495



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 159/341 (46%), Gaps = 40/341 (11%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           +++ +K C  LGA+R  K +H   + +    +  + +++V  YA       AR VFD I 
Sbjct: 6   YSAQIKQCIGLGASRHVKMIHGNIIRTLPHPETFLHNNIVHAYALIRSSIYARRVFDGIP 65

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
             N  SW  +L AY++SG   +    FE+ P R+   W  L+ G   S     A  ++  
Sbjct: 66  QPNLFSWNNLLLAYSKSGHLSEMERTFEKLPDRDGVTWNVLIEGYSLSGLVGAAVKAYNT 125

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M ++    +  + L +++   ++   + LGKQIHG VI LG+ES L + + ++DMY+K  
Sbjct: 126 MMKDFSSNLTRVTLMTMLKLSSSNGHVSLGKQIHGQVIKLGFESYLLVGSPLLDMYSKVG 185

Query: 288 DIIAAKDIF------------------------------GRMRRKDVVSWTSIIVGTAQH 317
            I  AK +F                               R   KD VSW+++I G AQ+
Sbjct: 186 CISDAKKVFYGLDDRNTVMYNTLMGGLLACGMIEDALQLFRGMEKDSVSWSAMIKGLAQN 245

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G  +E +  + EM   G+K ++  F  ++ AC  +G +  GR++   +I       +LQ 
Sbjct: 246 GMEKEAIECFREMKIEGLKMDQYPFGSVLPACGGLGAINDGRQIHACIIR-----TNLQD 300

Query: 378 Y----TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           +    + L+D+  +   L  A+ +   M  + +  +W A++
Sbjct: 301 HIYVGSALIDMYCKCKCLHYAKTVFDRMK-QKNVVSWTAMV 340


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/595 (39%), Positives = 356/595 (59%), Gaps = 8/595 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL--EEMPQRDHVSWASILTAY 79
           +K +HA II+ GL Q   +   LI    K D+   ++ LL   ++   +   W +++  Y
Sbjct: 58  IKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGY 117

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL-SPFCD 138
               L  ++ + F T +  D + P  F F++L KACG+     LGKQVHA  +L   F  
Sbjct: 118 ALQGLLSESTN-FYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFAS 176

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  V +S++D+Y KCG    AR VFD +  ++ VSWT ++ AYA+ G  + A  +F+  P
Sbjct: 177 DLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLP 236

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            +++  WTA+V+G  Q+    +A   F +M+  G++  D + L+ ++ ACA    ++   
Sbjct: 237 SKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGME-TDEVTLAGVISACAQLGAVKHAN 295

Query: 259 QIHGLV--IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
            I  +      G    + + +A++DMY+KC     A  +F  M+ ++V S++S+I+G A 
Sbjct: 296 WIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAM 355

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           HG+A   L L+ +M+   ++PN+VTF+G++ ACSH GLV +GR+LF  M + +G+ PS  
Sbjct: 356 HGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPD 415

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
           HY C++DLL R+G L+EA +L+K MP EP+   W ALL AC+ H N ++    AN L  L
Sbjct: 416 HYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELFKL 475

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS-HIFYAGET 495
           +P    +YILLSN+YASA  W+ VSK+RK++     KK PG S+ E   G  H F+AG+T
Sbjct: 476 EPNGIGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNGEIHDFFAGDT 535

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKS 555
           +HP   EI + L +L   ++  GY P+  S  +D+   EKER L  HSE+LA+AYGLL +
Sbjct: 536 THPRSSEIRQALKQLIERLRSHGYKPNLGSAPYDLTDDEKERILMSHSEKLALAYGLLCT 595

Query: 556 VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             G  ++++KN+R+C DCH VM   S IT REI+VRD  R+HHF +G CSC +FW
Sbjct: 596 EAGDTIKIMKNIRICEDCHNVMCAASEITGREIIVRDNMRFHHFHNGTCSCGNFW 650


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 233/639 (36%), Positives = 363/639 (56%), Gaps = 39/639 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ CA  +     + LHA     G      + ++L   Y KCD +  A  L + MP RD 
Sbjct: 111 IKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDV 170

Query: 70  VSWASILTAYNQANLPQKTISIFSTM---------------------------------- 95
           V W++++  Y++  L ++   +F  M                                  
Sbjct: 171 VVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRM 230

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
           + +    PD    + ++ A G L    +G QVH   +      D  V S+++DMY KCG 
Sbjct: 231 MLVQGFWPDGSTVSCVLPAVGCLEDVVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGC 290

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF----EQAPVRNLFLWTALVSG 211
                 VFD ++     S  A L+  +R+G    A+E+F    +Q    N+  WT++++ 
Sbjct: 291 VKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIAS 350

Query: 212 LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271
             Q+  +++A   F +M+  GV+  + + + S++ AC N + L  GK+IH   +  G   
Sbjct: 351 CSQNGKDLEALELFRDMQAYGVE-PNAVTIPSLIPACGNISALMHGKEIHCFSLRRGIFD 409

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
            +++ +A++DMYAKC  I  A+  F +M   ++VSW +++ G A HG+A+ET+ ++  M+
Sbjct: 410 DVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETMEMFHMML 469

Query: 332 SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
            +G KP+ VTF  ++ AC+  GL  +G + + SM E++GI P ++HY CL+ LLSR G L
Sbjct: 470 QSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLLSRVGKL 529

Query: 392 DEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451
           +EA ++IK MPFEPD   W ALLS+C+ H N  +G   A  L  L+P +P +YILLSN+Y
Sbjct: 530 EEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTNPGNYILLSNIY 589

Query: 452 ASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELD 511
           AS  +W   +++R++M    ++K PGYS+IE G   H+  AG+ SHP   +I E L +L+
Sbjct: 590 ASKGLWDEENRIREVMKSKGLRKNPGYSWIEVGHKVHMLLAGDQSHPQMKDILEKLDKLN 649

Query: 512 AEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCG 571
            +MK+ GY+P T+ VL D+E+++KE+ L  HSE+LAV  GLL + PG  L+V+KNLR+C 
Sbjct: 650 MQMKKSGYLPKTNFVLQDVEEQDKEQILCGHSEKLAVVLGLLNTSPGQPLQVIKNLRICD 709

Query: 572 DCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           DCH V+K+ISR+  REI VRD  R+HHFKDG CSC DFW
Sbjct: 710 DCHAVIKVISRLEGREIYVRDTNRFHHFKDGVCSCGDFW 748



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 127/484 (26%), Positives = 214/484 (44%), Gaps = 79/484 (16%)

Query: 26  HAQIIKLGLHQYGPLPNTLIDAYGKC---DLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           HA I++L L     L  +L+  Y         Q +  L   +P     S++S++ A+ ++
Sbjct: 23  HALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARS 82

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           +     ++ FS +  L +L PD F+  S +K+C SL A   G+Q+HA    S F  D +V
Sbjct: 83  HHFPHVLTTFSHLHPL-RLIPDAFLLPSAIKSCASLRALDPGQQLHAFAAASGFLTDSIV 141

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ----AP 198
            SSL  MY KC    +AR +FD +  ++ V W+AM++ Y+R G  ++A E+F +      
Sbjct: 142 ASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGV 201

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
             NL  W  +++G   +    +A   F  M  +G    D   +S ++ A      + +G 
Sbjct: 202 EPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGF-WPDGSTVSCVLPAVGCLEDVVVGA 260

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDII---------------------------- 290
           Q+HG VI  G  S  F+ +A++DMY KC  +                             
Sbjct: 261 QVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNG 320

Query: 291 ---AAKDIFGRMRRK----DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
               A ++F + + +    +VV+WTSII   +Q+G+  E L L+ +M + GV+PN VT  
Sbjct: 321 MVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIP 380

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            LI AC ++  +  G+++    +   GI   +   + L+D+ ++ G +  A      M  
Sbjct: 381 SLIPACGNISALMHGKEIHCFSLR-RGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSA 439

Query: 404 ----------------------------------EPDEPTWAALLSACKHHRNTEMGTRV 429
                                             +PD  T+  +LSAC  +  TE G R 
Sbjct: 440 LNLVSWNAVMKGYAMHGKAKETMEMFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRC 499

Query: 430 ANHL 433
            N +
Sbjct: 500 YNSM 503


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  455 bits (1171), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 219/569 (38%), Positives = 349/569 (61%), Gaps = 32/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +++ Y +  L++ A  L +EM ++D  SW +++T Y + + P++ + ++S M  +   
Sbjct: 155 NVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNS 214

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +P+ F  +  V A  ++   R GK++H   V +    D+V+ SSL+DMY KCG  + AR 
Sbjct: 215 RPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARN 274

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +FD I  K+ VSWT+M+  Y +S R ++   +F +            + G  +  NE   
Sbjct: 275 IFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSE------------LVGSCERPNE--- 319

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
            Y+F                + ++ ACA+    ELGKQ+HG +  +G++   F S+++VD
Sbjct: 320 -YTF----------------AGVLNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVD 362

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC +I +AK +     + D+VSWTS+I G AQ+GQ +E L  +D ++ +G KP+ VT
Sbjct: 363 MYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPDHVT 422

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           FV ++ AC+H GLV KG + F S+ E + ++ +  HYTCL+DLL+RSG  ++ +++I  M
Sbjct: 423 FVNVLSACTHAGLVEKGLEFFYSITEKHRLSHTSDHYTCLVDLLARSGRFEQLKSVISEM 482

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P +P +  WA++L  C  + N ++    A  L  ++PE+P +Y+ ++N+YA+A  W+   
Sbjct: 483 PMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEG 542

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           K+RK M  + V K PG S+ E  +  H+F A +TSHP+ ++I E L EL  +MK  GYVP
Sbjct: 543 KMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVP 602

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
            TS VLHD+E ++KE  L +HSE+LAVA+ +L +  GT ++V KNLR C DCH  +K IS
Sbjct: 603 ATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFIS 662

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
            ITKR+I VRD+TR+H F++G+CSC D+W
Sbjct: 663 NITKRKITVRDSTRFHCFENGQCSCGDYW 691



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 181/340 (53%), Gaps = 4/340 (1%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +P    + +L++ C    A   GK+VH     S F    V+ + L+ MYAKCG   +AR 
Sbjct: 82  KPPASTYCNLIQVCSQTRALEEGKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARK 141

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VFD +  ++  SW  M++ YA  G  ++A ++F++   ++ + WTA+V+G V+     +A
Sbjct: 142 VFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEA 201

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              +  M+R      +   +S  V A A    +  GK+IHG ++  G +S   + ++++D
Sbjct: 202 LVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGLDSDEVLWSSLMD 261

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  I  A++IF ++  KDVVSWTS+I    +  +  E  +L+ E+V +  +PNE T
Sbjct: 262 MYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYT 321

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F G++ AC+ +     G+++   M    G  P     + L+D+ ++ G+++ A++++   
Sbjct: 322 FAGVLNACADLTTEELGKQVHGYMTR-VGFDPYSFASSSLVDMYTKCGNIESAKHVVDGC 380

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPE 439
           P +PD  +W +L+  C  +   +   +  + LL    KP+
Sbjct: 381 P-KPDLVSWTSLIGGCAQNGQPDEALKYFDLLLKSGTKPD 419



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 162/359 (45%), Gaps = 51/359 (14%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  I++ GL     L ++L+D YGKC  +  A ++ +++ ++D VSW S++  Y ++
Sbjct: 238 KEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKS 297

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           +  ++  S+FS ++   + +P+ + FA ++ AC  L    LGKQVH       F      
Sbjct: 298 SRWREGFSLFSELVGSCE-RPNEYTFAGVLNACADLTTEELGKQVHGYMTRVGFDPYSFA 356

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            SSLVDMY KCG   +A+ V D     + VSWT+++   A++G+  +A++ F+       
Sbjct: 357 SSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIGGCAQNGQPDEALKYFD------- 409

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI-- 260
                L SG                         D +   +++ AC +  ++E G +   
Sbjct: 410 ---LLLKSGTKP----------------------DHVTFVNVLSACTHAGLVEKGLEFFY 444

Query: 261 -----HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-DVVSWTSIIVGT 314
                H L     + +CL      VD+ A+       K +   M  K     W S++ G 
Sbjct: 445 SITEKHRLSHTSDHYTCL------VDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGC 498

Query: 315 AQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           + +G  +       E+    ++P N VT+V +    +  G   +  K+ K M ++ G+T
Sbjct: 499 STYGNIDLAEEAAQELFK--IEPENPVTYVTMANIYAAAGKWEEEGKMRKRM-QEIGVT 554



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 87/198 (43%), Gaps = 13/198 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K +H  + ++G   Y    ++L+D Y KC  ++ A H+++  P+ D 
Sbjct: 326 LNACADLTTEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDL 385

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S++    Q   P + +  F  +L     +PDH  F +++ AC   G    G +   
Sbjct: 386 VSWTSLIGGCAQNGQPDEALKYFDLLLK-SGTKPDHVTFVNVLSACTHAGLVEKGLEFFY 444

Query: 130 CFV----LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS-VSWTAMLSAYARS 184
                  LS   D     + LVD+ A+ G     ++V   + +K S   W ++L   +  
Sbjct: 445 SITEKHRLSHTSDH---YTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTY 501

Query: 185 GR----KKDAMEIFEQAP 198
           G     ++ A E+F+  P
Sbjct: 502 GNIDLAEEAAQELFKIEP 519


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 216/569 (37%), Positives = 353/569 (62%), Gaps = 32/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +++ Y +  L++ A +L +EMP+RD  SW +++T Y + + P++ + ++S M  +   
Sbjct: 157 NVMVNGYAEVGLLEEARNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNS 216

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +P+ F  +S V A  ++   R GK++H   V +    D+V+ SSL+DMY KCG  + AR 
Sbjct: 217 KPNIFTVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARN 276

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +FD I  K+ VSWT+M+  Y +S R ++   +F +            + G  +  NE   
Sbjct: 277 IFDKIIDKDVVSWTSMIDRYFKSSRWREGFSLFSE------------LIGSCERPNE--- 321

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
            Y+F                S ++ ACA+    ELG+Q+HG +  +G++   F S++++D
Sbjct: 322 -YTF----------------SGVLNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLID 364

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC +I +A+ +     + D+VS TS+I G AQ+G+ +E L  +D ++ +G KP+ VT
Sbjct: 365 MYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFDLLLKSGTKPDHVT 424

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           FV ++ AC+H GLV KG + F S+ E + +T +  HYTCL+DLL+RSG  ++ ++++  M
Sbjct: 425 FVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEM 484

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P +P +  WA++L  C  + N ++    A  L  ++PE+P +Y+ ++N+YA+A  W+   
Sbjct: 485 PMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEG 544

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           K+RK M  + + K+PG S+ E  +  H+F A +TSHP+ ++I E L EL  +MK  GYVP
Sbjct: 545 KMRKRMQEIGITKKPGSSWTEIKRKRHVFIAADTSHPMYNQIIEFLGELRKKMKEEGYVP 604

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
            TS VLHD+E ++KE  L +HSE+LAVA+ +L +  GT ++V KNLR C DCH  +K IS
Sbjct: 605 ATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHSAIKFIS 664

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +ITKR+I +RD+TR+H F++G+CSC D+W
Sbjct: 665 KITKRKITIRDSTRFHCFENGQCSCRDYW 693



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 161/359 (44%), Gaps = 51/359 (14%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  I++ GL     L ++L+D YGKC  +  A ++ +++  +D VSW S++  Y ++
Sbjct: 240 KEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKIIDKDVVSWTSMIDRYFKS 299

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           +  ++  S+FS ++   + +P+ + F+ ++ AC  L    LG+QVH       F      
Sbjct: 300 SRWREGFSLFSELIGSCE-RPNEYTFSGVLNACADLTTEELGRQVHGYMTRVGFDPYSFA 358

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            SSL+DMY KCG   +AR V D     + VS T+++  YA++G+  +A++ F+       
Sbjct: 359 SSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNGKPDEALKYFD------- 411

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI-- 260
                L SG                         D +   +++ AC +  ++E G +   
Sbjct: 412 ---LLLKSGTKP----------------------DHVTFVNVLSACTHAGLVEKGLEFFY 446

Query: 261 -----HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-DVVSWTSIIVGT 314
                H L     + +CL      VD+ A+       K +   M  K     W S++ G 
Sbjct: 447 SITEKHDLTHTSDHYTCL------VDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGC 500

Query: 315 AQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           + +G  +       E+    ++P N VT+V +    +  G   +  K+ K M ++ GIT
Sbjct: 501 STYGNIDLAEEAAQELFK--IEPENPVTYVTMANIYAAAGKWEEEGKMRKRM-QEIGIT 556



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 15/199 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        + +H  + ++G   Y    ++LID Y KC  ++ A H+++  P+ D 
Sbjct: 328 LNACADLTTEELGRQVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCPKPDL 387

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS  S++  Y Q   P + +  F  +L     +PDH  F +++ AC   G    G +   
Sbjct: 388 VSLTSLIGGYAQNGKPDEALKYFDLLLK-SGTKPDHVTFVNVLSACTHAGLVEKGLE--- 443

Query: 130 CFVLSPFCDDDVVKSS-----LVDMYAKCGLPNNARAVFDSIKLKNS-VSWTAMLSAYAR 183
            F  S     D+  +S     LVD+ A+ G     ++V   + +K S   W ++L   + 
Sbjct: 444 -FFYSITEKHDLTHTSDHYTCLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCST 502

Query: 184 SGR----KKDAMEIFEQAP 198
            G     ++ A E+F+  P
Sbjct: 503 YGNIDLAEEAAQELFKIEP 521


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/605 (38%), Positives = 355/605 (58%), Gaps = 33/605 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y++ L  C         K +HAQI++   H    +   L   Y KC  V+ A  + E +P
Sbjct: 249 YMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLP 308

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            RD ++W +++     +   ++   +F  ML  + + PD   + +++ AC   G    GK
Sbjct: 309 NRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLK-ECVAPDRVTYLAILSACARPGGLACGK 367

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++HA            VK  LV                  ++  N     A+++ Y+++G
Sbjct: 368 EIHA----------RAVKDGLVS----------------DVRFGN-----ALINMYSKAG 396

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             KDA ++F++ P R++  WTALV G       +++F +F +M ++GV+  + +    ++
Sbjct: 397 SMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVE-ANKITYMCVL 455

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            AC+N   L+ GK+IH  V+  G  + L ++NA++ MY KC  +  A  +   M  +DVV
Sbjct: 456 KACSNPVALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRVSEGMSTRDVV 515

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +W ++I G AQ+G+  E L  ++ M S  ++PN  TFV ++ AC    LV +GR+ F SM
Sbjct: 516 TWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSACRVRNLVEEGRRQFASM 575

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
            +DYGI P+ +HY C++D+L+R+GHL EAE++I  MPF+P    W ALL+AC+ H N E+
Sbjct: 576 RKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAAMWGALLAACRAHGNVEI 635

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G + A   L L+P++  +Y+ LS +YA+A MW+ V+K+RKLM    VKKEPG S+IE   
Sbjct: 636 GEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKLRKLMKERGVKKEPGRSWIEVAG 695

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H F AG+ SHP  +EI+  L  L  ++K  GYVPDT  V+HD++Q+ KER +  HSE+
Sbjct: 696 EVHSFVAGDQSHPRTEEIYSELEALTKQIKSLGYVPDTRFVMHDLDQEGKERAVCHHSEK 755

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+AYGL+ + P T +RV KNLRVC DCH   K IS+IT REI+ RDA R+HHFK+G+CS
Sbjct: 756 LAIAYGLISTPPETPIRVSKNLRVCTDCHTATKFISKITGREIIARDAHRFHHFKNGECS 815

Query: 606 CNDFW 610
           C D+W
Sbjct: 816 CGDYW 820



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 199/411 (48%), Gaps = 35/411 (8%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  L+ C + +     K +H  I++ G+     + NTL+  Y  C  V  A  L ++  
Sbjct: 47  YVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFS 106

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            +  VSW  +++ Y    L Q+  ++F T++  + L+PD F F S++ AC S  A   G+
Sbjct: 107 NKSVVSWNVMISGYAHRGLGQEAFNLF-TLMQQEGLEPDKFTFVSILSACSSPAALNWGR 165

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           +VH   +                   + GL NNA                A++S YA+ G
Sbjct: 166 EVHVRVM-------------------EAGLANNATV------------GNALISMYAKCG 194

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             +DA  +F+    R+   WT L     +S    ++  ++  M +EGV     +   +++
Sbjct: 195 SVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVR-PSRITYMNVL 253

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            AC + A LE GKQIH  ++   + S + +S A+  MY KC  +  A+++F  +  +DV+
Sbjct: 254 SACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVI 313

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +W ++I G    GQ EE   ++  M+   V P+ VT++ ++ AC+  G +  G+++    
Sbjct: 314 AWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARA 373

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           ++D G+   ++    L+++ S++G + +A  +   MP + D  +W AL+  
Sbjct: 374 VKD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTALVGG 422



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/349 (27%), Positives = 161/349 (46%), Gaps = 65/349 (18%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           Q D + +  L+++C       +GKQVH   +      +  + ++L+ +Y  CG  N AR 
Sbjct: 41  QVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARR 100

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +FD    K+ VSW  M+S YA  G  +                               +A
Sbjct: 101 LFDKFSNKSVVSWNVMISGYAHRGLGQ-------------------------------EA 129

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
           F  F  M++EG++  D     SI+ AC++ A L  G+++H  V+  G  +   + NA++ 
Sbjct: 130 FNLFTLMQQEGLE-PDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALIS 188

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MYAKC  +  A+ +F  M  +D VSWT++    A+ G A+E+L  Y  M+  GV+P+ +T
Sbjct: 189 MYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRIT 248

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIE-----DYGITPSLQH--------------YTCL- 381
           ++ ++ AC  +  + KG+++   ++E     D  ++ +L                + CL 
Sbjct: 249 YMNVLSACGSLAALEKGKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLP 308

Query: 382 ----------LDLLSRSGHLDEAENLIKAMPFE---PDEPTWAALLSAC 417
                     +  L  SG L+EA  +   M  E   PD  T+ A+LSAC
Sbjct: 309 NRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSAC 357


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  454 bits (1169), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 225/601 (37%), Positives = 354/601 (58%), Gaps = 18/601 (2%)

Query: 16  HQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASI 75
           H +A  + TL    ++ G           +D Y  C  + YA ++ +EM  RD V+W ++
Sbjct: 134 HGVAFKIATLCDPFVETGF----------MDMYASCGRINYARNVFDEMSHRDVVTWNTM 183

Query: 76  LTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP 135
           +  Y +  L  +   +F  M     + PD  +  ++V ACG  G  R  + ++   + + 
Sbjct: 184 IERYCRFGLVDEAFKLFEEMKD-SNVMPDEMILCNIVSACGRTGNMRYNRAIYEFLIEND 242

Query: 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
              D  + ++LV MYA  G  + AR  F  + ++N    TAM+S Y++ GR  DA  IF+
Sbjct: 243 VRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFD 302

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
           Q   ++L  WT ++S  V+S    +A   F EM   G+   D + + S++ ACAN  +L+
Sbjct: 303 QTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIK-PDVVSMFSVISACANLGILD 361

Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
             K +H  +   G ES L I+NA+++MYAKC  + A +D+F +M R++VVSW+S+I   +
Sbjct: 362 KAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALS 421

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
            HG+A + L+L+  M    V+PNEVTFVG++Y CSH GLV +G+K+F SM ++Y ITP L
Sbjct: 422 MHGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKL 481

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
           +HY C++DL  R+  L EA  +I++MP   +   W +L+SAC+ H   E+G   A  +L 
Sbjct: 482 EHYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILE 541

Query: 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGET 495
           L+P+   + +L+SN+YA    W+ V  +R++M    V KE G S I+    SH F  G+ 
Sbjct: 542 LEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDK 601

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKS 555
            H   +EI+  L E+ +++K  GYVPD  SVL D+E++EK+  + WHSE+LA+ +GL+  
Sbjct: 602 RHKQSNEIYAKLDEVVSKLKLAGYVPDCGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNE 661

Query: 556 VPGT------VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
                     V+R+VKNLRVC DCH+  K++S++ +REI+VRD TR+H +K+G CSC D+
Sbjct: 662 EKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDY 721

Query: 610 W 610
           W
Sbjct: 722 W 722



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 186/373 (49%), Gaps = 19/373 (5%)

Query: 56  YAHHLLEEMPQR-DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA 114
           YA ++   +P   + + +   L   ++++ P+ TI  +  +  +   + D F F  ++KA
Sbjct: 62  YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGG-RLDQFSFLPILKA 120

Query: 115 CGSLGATRLGKQVHA-CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS 173
              + A   G ++H   F ++  CD   V++  +DMYA CG  N AR VFD +  ++ V+
Sbjct: 121 VSKVSALFEGMELHGVAFKIATLCDP-FVETGFMDMYASCGRINYARNVFDEMSHRDVVT 179

Query: 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID------AFYSFIE 227
           W  M+  Y R G   +A ++FE+    N+     ++  +V +           A Y F+ 
Sbjct: 180 WNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYEFL- 238

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
              E    +D  +L+++V   A    +++ ++    +        LF+S A+V  Y+KC 
Sbjct: 239 --IENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRN----LFVSTAMVSGYSKCG 292

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            +  A+ IF +  +KD+V WT++I    +    +E L +++EM  +G+KP+ V+   +I 
Sbjct: 293 RLDDAQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVIS 352

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           AC+++G++ K  K   S I   G+   L     L+++ ++ G LD   ++ + MP   + 
Sbjct: 353 ACANLGILDKA-KWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMP-RRNV 410

Query: 408 PTWAALLSACKHH 420
            +W+++++A   H
Sbjct: 411 VSWSSMINALSMH 423



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 84/176 (47%), Gaps = 9/176 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CA   I    K +H+ I   GL     + N LI+ Y KC  +     + E+MP+R+ 
Sbjct: 351 ISACANLGILDKAKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNV 410

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW+S++ A +        +S+F+ M   + ++P+   F  ++  C   G    GK++ A
Sbjct: 411 VSWSSMINALSMHGEASDALSLFARM-KQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFA 469

Query: 130 C----FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSA 180
                + ++P  +       +VD++ +  L   A  V +S+ +  N V W +++SA
Sbjct: 470 SMTDEYNITPKLEH---YGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSA 522


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/608 (38%), Positives = 365/608 (60%), Gaps = 9/608 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTL---IDAYGKCDLVQYAHHLLEEMPQ 66
           +R+  R       K +HAQI    L Q   +   L   + A     L  Y   L  ++  
Sbjct: 12  VRILERCSSLNQAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSYPRLLFSQLHT 71

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
            +  +W +++ AY       + +S +S+M    ++ P  F F++L  AC ++  + LG Q
Sbjct: 72  PNPFAWTALIRAYALRGPLSQALSFYSSMRK-RRVSPISFTFSALFSACAAVRHSALGAQ 130

Query: 127 VHA-CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           +HA   +L  F  D  V ++++DMY KCG    AR VFD +  ++ +SWT ++ AY R G
Sbjct: 131 LHAQTLLLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIG 190

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             + A ++F+  PV+++  WTA+V+G  Q+   +DA   F  +R EGV+I D + L  ++
Sbjct: 191 DMRAARDLFDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEI-DEVTLVGVI 249

Query: 246 GACANFAVLELGKQIHGLVIALGYE--SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
            ACA     +    I  +  + G+     + + +A++DMY+KC ++  A D+F  MR ++
Sbjct: 250 SACAQLGASKYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERN 309

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           V S++S+IVG A HG+A   + L+ +M+  GVKPN VTFVG++ ACSH GLV +G++LF 
Sbjct: 310 VFSYSSMIVGFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFA 369

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
           SM + YG+ P+ + Y C+ DLLSR+G+L++A  L++ MP E D   W ALL A   H N 
Sbjct: 370 SMEKCYGVAPTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNP 429

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           ++    +  L  L+P++  +Y+LLSN YASA  W  VSKVRKL+    +KK PG+S++E 
Sbjct: 430 DVAEIASKRLFELEPDNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEA 489

Query: 484 GKGS-HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWH 542
             G  H F AG+ SHP  +EI + L +L   +K  GY P+ SS+ + +  +EK   L  H
Sbjct: 490 KNGMIHKFVAGDVSHPKINEIKKELNDLLERLKGIGYQPNLSSLPYGINDREKRLLLMAH 549

Query: 543 SERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           SE+LA+A+GLL +  G+ ++++KNLR+C DCHIVM   S++T R+IVVRD TR+HHF +G
Sbjct: 550 SEKLALAFGLLSTDVGSTIKIMKNLRICEDCHIVMCGASKVTGRKIVVRDNTRFHHFLNG 609

Query: 603 KCSCNDFW 610
            CSC++FW
Sbjct: 610 ACSCSNFW 617


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/602 (38%), Positives = 353/602 (58%), Gaps = 37/602 (6%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC---DLVQYAHHLLEEMPQRDH 69
           CA   +    +  H  ++K GL     +  +L+D Y KC     V  A  + + MP  + 
Sbjct: 155 CAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNV 214

Query: 70  VSWASILTAYNQAN-LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
           +SW +I+T Y Q+    ++ I +F  M+   +++P+HF F+S++KAC +L    LG+QV+
Sbjct: 215 MSWTAIITGYVQSGGCDREAIELFLEMVQ-GQVKPNHFTFSSVLKACANLSDIWLGEQVY 273

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           A  V       + V +SL+ MY++C                               G  +
Sbjct: 274 ALVVKMRLASINCVGNSLISMYSRC-------------------------------GNME 302

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A + F+    +NL  +  +V+   +S N  +AF  F E+   G   V+    +S++   
Sbjct: 303 NARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTG-VNAFTFASLLSGA 361

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           ++   +  G+QIH  ++  G++S L I NA++ MY++C +I AA  +F  M   +V+SWT
Sbjct: 362 SSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWT 421

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           S+I G A+HG A   L  + +M+ AGV PNEVT++ ++ ACSHVGL+ +G K FKSM  +
Sbjct: 422 SMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVE 481

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           +GI P ++HY C++DLL RSGHL+EA  L+ +MPF+ D       L AC+ H N ++G  
Sbjct: 482 HGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKH 541

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            A  +L   P DP++YILLSN++ASA  W+ V+++RK M    + KE G S+IE     H
Sbjct: 542 AAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVH 601

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            FY G+TSHP   EI++ L +L  ++K  GY+P T  VLHD+E+++KE+ LF HSE++AV
Sbjct: 602 KFYVGDTSHPQAQEIYDELDQLALKIKELGYIPSTDFVLHDVEEEQKEQYLFQHSEKIAV 661

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           AYG + +     +RV KNLRVCGDCH   K  S + ++EIV+RDA R+HHFKDG CSCND
Sbjct: 662 AYGFISTSTSRPIRVFKNLRVCGDCHTAFKYFSIVRRKEIVLRDANRFHHFKDGTCSCND 721

Query: 609 FW 610
           +W
Sbjct: 722 YW 723



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/416 (27%), Positives = 205/416 (49%), Gaps = 39/416 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGP-LPNTLIDAY--GKCDLVQYAHHLLEEMPQ 66
            R C+  +     K +   ++K G  +    +   LID +  G  DL + A+ + + MP 
Sbjct: 49  FRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDL-ESAYKVFDRMPD 107

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           R+ V+W  ++T + Q    +  + +F  M+ L    PD F  + +V AC  +G   LG+Q
Sbjct: 108 RNVVTWTLMITRFQQLGFSRDAVDLFLDMV-LSGYVPDRFTLSGVVSACAEMGLLSLGRQ 166

Query: 127 VHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            H C V+    D DV V  SLVDMYAKC                               G
Sbjct: 167 FH-CLVMKSGLDLDVCVGCSLVDMYAKC----------------------------VADG 197

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN-EIDAFYSFIEMRREGVDIVDPLVLSSI 244
              DA ++F++ PV N+  WTA+++G VQS   + +A   F+EM +  V   +    SS+
Sbjct: 198 SVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVK-PNHFTFSSV 256

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + ACAN + + LG+Q++ LV+ +   S   + N+++ MY++C ++  A+  F  +  K++
Sbjct: 257 LKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNL 316

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           VS+ +I+   A+   +EE   L++E+  AG   N  TF  L+   S +G +GKG ++   
Sbjct: 317 VSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSR 376

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           +++  G   +L     L+ + SR G+++ A  +   M  + +  +W ++++    H
Sbjct: 377 ILKS-GFKSNLHICNALISMYSRCGNIEAAFQVFNEMG-DGNVISWTSMITGFAKH 430



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 183/378 (48%), Gaps = 49/378 (12%)

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +RD VSW+++++ Y       + IS F  ML      P+ + F  + +AC +     LGK
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECG-FYPNEYCFTGVFRACSNKENISLGK 62

Query: 126 QVHACFVLSPFCDDDV-VKSSLVDMYAKC-GLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
            +    + + + + DV V  +L+DM+ K  G   +A  VFD +  +N V+WT M++ + +
Sbjct: 63  IIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQ 122

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            G  +DA+++F             ++SG V  R                        LS 
Sbjct: 123 LGFSRDAVDLF----------LDMVLSGYVPDR----------------------FTLSG 150

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC---SDIIAAKDIFGRMR 300
           +V ACA   +L LG+Q H LV+  G +  + +  ++VDMYAKC     +  A+ +F RM 
Sbjct: 151 VVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMP 210

Query: 301 RKDVVSWTSIIVGTAQHGQAE-ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
             +V+SWT+II G  Q G  + E + L+ EMV   VKPN  TF  ++ AC+++  +  G 
Sbjct: 211 VHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLSDIWLGE 270

Query: 360 KLFKSMIEDYGITPSLQHYTC----LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
           +++  +++       L    C    L+ + SR G+++ A      + FE +  ++  +++
Sbjct: 271 QVYALVVK-----MRLASINCVGNSLISMYSRCGNMENARKAFDVL-FEKNLVSYNTIVN 324

Query: 416 ACKHHRNTEMGTRVANHL 433
           A     N+E    + N +
Sbjct: 325 AYAKSLNSEEAFELFNEI 342



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 170/383 (44%), Gaps = 55/383 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA        + ++A ++K+ L     + N+LI  Y +C  ++ A    + + +++ 
Sbjct: 257 LKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNL 316

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS+ +I+ AY ++   ++   +F+ +        + F FASL+    S+GA   G+Q+H+
Sbjct: 317 VSYNTIVNAYAKSLNSEEAFELFNEIEGAGT-GVNAFTFASLLSGASSIGAIGKGEQIHS 375

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + S F  +  + ++L+ MY++CG    A  VF+ +   N +SWT+M++ +A+ G    
Sbjct: 376 RILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATR 435

Query: 190 AMEIF----EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR---------------- 229
           A+E F    E     N   + A++S         +    F  M+                
Sbjct: 436 ALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVV 495

Query: 230 ---------REGVDIV-------DPLVLSSIVGACANFAVLELGKQIHGLVIALG-YESC 272
                     E +++V       D LVL + +GAC     ++LGK    +++    ++  
Sbjct: 496 DLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHDPA 555

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV-----SWTSI-------IVGTAQHGQA 320
            +I   + +++A         +I  +M+ +++      SW  +        VG   H QA
Sbjct: 556 AYI--LLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENKVHKFYVGDTSHPQA 613

Query: 321 EETLALYDEMVSAGVKPNEVTFV 343
           +E   +YDE+    +K  E+ ++
Sbjct: 614 QE---IYDELDQLALKIKELGYI 633


>gi|357440933|ref|XP_003590744.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479792|gb|AES60995.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 227/583 (38%), Positives = 346/583 (59%), Gaps = 12/583 (2%)

Query: 37  YGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTML 96
           Y P   T+I  Y + D +  A  LL+ +     V+W ++++ Y +  L ++    F  M 
Sbjct: 216 YEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMH 275

Query: 97  ALDKLQPDHFVFASLVKACGS----LGATRLGKQVHACFVLSPFCDDD-----VVKSSLV 147
           ++  +Q D + + SL+ ACGS    +G    G+QVH  ++L    +        V ++L+
Sbjct: 276 SMG-IQEDEYTYTSLISACGSCNEKMGMFNCGRQVHG-YILRTVVEPSHHFVLSVNNALI 333

Query: 148 DMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTA 207
             Y K      AR VFD + +++ +SW A+LS Y  + R ++A  IF + P RN+  WT 
Sbjct: 334 TFYTKYDRMIEARRVFDKMPVRDIISWNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTV 393

Query: 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267
           ++SGL Q+    +    F +M+ EG++  D    +  + AC+    L+ G+QIH  VI L
Sbjct: 394 MISGLAQNGFGEEGLKLFNQMKSEGLEPCD-YAFAGAITACSVLGSLDNGQQIHSQVIRL 452

Query: 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327
           G++S L   NA++ MY++C  + +A+ +F  M   D VSW ++I   AQHG   + + L+
Sbjct: 453 GHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQHGHGVKAIELF 512

Query: 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
           ++M+   + P+ +TF+ ++ AC+H GL+ +GR  F +M   YGITP   HY  L+DLL R
Sbjct: 513 EQMMKEDILPDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGEDHYARLIDLLCR 572

Query: 388 SGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447
           +G   +A+++IK+MPFE   P W ALL+ C+ H N E+G + A+ LL L P    +YI+L
Sbjct: 573 AGMFLKAQSVIKSMPFEAGAPIWEALLAGCRIHGNMELGIQAADRLLELIPGQDGTYIIL 632

Query: 448 SNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELL 507
           SN+YA+   W  V++VR LM    VKKEPG S++E     H+F   +  HP    ++  L
Sbjct: 633 SNMYAALGQWDEVARVRLLMRERGVKKEPGCSWVEVENMVHVFLVDDARHPEVQAVYTYL 692

Query: 508 TELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNL 567
            +L  EMK+ GYVPDT  VLHDME + KE  L  HSE+LAV YG++K   G  +RV KNL
Sbjct: 693 QQLVNEMKKLGYVPDTKFVLHDMESEHKEHSLSTHSEKLAVVYGIMKLPLGATIRVFKNL 752

Query: 568 RVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+CGDCH   K IS++ +REIVVRD  R+HHFK+G+CSC ++W
Sbjct: 753 RICGDCHNAFKYISKVVEREIVVRDRKRFHHFKNGECSCGNYW 795



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 215/505 (42%), Gaps = 102/505 (20%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           YL +L   +  QI    + +HA I+  G      + N LI+ Y K   + YA  L +++P
Sbjct: 10  YLTQLNHVSTTQI--IARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIP 67

Query: 66  Q---------------------------------RDHVSWASILTAYNQANLPQKTISIF 92
           +                                 RD VS+ +++TAY+  N     +++F
Sbjct: 68  KPDIVARTTLLSAYSSSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLF 127

Query: 93  STMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV------LSPFCDDDVVKSSL 146
             M     L PD F F+S++ A   +       Q+  C V      L P      V ++L
Sbjct: 128 VQMKRYGFL-PDPFTFSSVLSALSLIADEERHCQMLHCEVIKLGTLLIP-----SVTNAL 181

Query: 147 VDMYAKCG---------LPNNARAVFDSIKLKNSV---SWTAMLSAYARSGRKKDAMEIF 194
           +  Y  C          L  +AR VFD    KN +   SWT M++ Y R+     A E+ 
Sbjct: 182 LSCYVCCASSPLVKSSQLMASARKVFDETP-KNQIYEPSWTTMIAGYVRNDDLVAARELL 240

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN---- 250
           +         W A++SG V+     +AF +F  M   G+   D    +S++ AC +    
Sbjct: 241 DGLTYPIDVAWNAMISGYVRRGLYEEAFDTFRRMHSMGIQ-EDEYTYTSLISACGSCNEK 299

Query: 251 FAVLELGKQIHGLVIALGYES----CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
             +   G+Q+HG ++    E      L ++NA++  Y K   +I A+ +F +M  +D++S
Sbjct: 300 MGMFNCGRQVHGYILRTVVEPSHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVRDIIS 359

Query: 307 -------------------------------WTSIIVGTAQHGQAEETLALYDEMVSAGV 335
                                          WT +I G AQ+G  EE L L+++M S G+
Sbjct: 360 WNAVLSGYVNAQRIEEANSIFSEMPERNVLTWTVMISGLAQNGFGEEGLKLFNQMKSEGL 419

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
           +P +  F G I ACS +G +  G+++   +I   G    L     L+ + SR G ++ AE
Sbjct: 420 EPCDYAFAGAITACSVLGSLDNGQQIHSQVIR-LGHDSGLSAGNALITMYSRCGVVESAE 478

Query: 396 NLIKAMPFEPDEPTWAALLSACKHH 420
           ++   MP+  D  +W A+++A   H
Sbjct: 479 SVFLTMPY-VDSVSWNAMIAALAQH 502



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 158/370 (42%), Gaps = 60/370 (16%)

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           + + VHA  + S F  +  + + L+++Y K      AR +FD I   + V+ T +LSAY+
Sbjct: 23  IARAVHAHILTSGFKPNTFILNRLINIYCKSSNITYARKLFDKIPKPDIVARTTLLSAYS 82

Query: 183 RSGRKKDAMEIFEQAP--VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
            SG  K A ++F   P  +R+   + A+++      +   A   F++M+R G  + DP  
Sbjct: 83  SSGNVKLAQQLFNATPLTIRDTVSYNAMITAYSHGNDGHAALNLFVQMKRYGF-LPDPFT 141

Query: 241 LSSIVGACANFAVLELGKQ-IHGLVIALGYESCLFISNAIVDMYAKCS------------ 287
            SS++ A +  A  E   Q +H  VI LG      ++NA++  Y  C+            
Sbjct: 142 FSSVLSALSLIADEERHCQMLHCEVIKLGTLLIPSVTNALLSCYVCCASSPLVKSSQLMA 201

Query: 288 ------------------------------DIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
                                         D++AA+++   +     V+W ++I G  + 
Sbjct: 202 SARKVFDETPKNQIYEPSWTTMIAGYVRNDDLVAARELLDGLTYPIDVAWNAMISGYVRR 261

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACS----HVGLVGKGRKLFKSMIEDYGITP 373
           G  EE    +  M S G++ +E T+  LI AC      +G+   GR++   ++    + P
Sbjct: 262 GLYEEAFDTFRRMHSMGIQEDEYTYTSLISACGSCNEKMGMFNCGRQVHGYILRTV-VEP 320

Query: 374 S----LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           S    L     L+   ++   + EA  +   MP   D  +W A+LS   + +  E     
Sbjct: 321 SHHFVLSVNNALITFYTKYDRMIEARRVFDKMPVR-DIISWNAVLSGYVNAQRIEE---- 375

Query: 430 ANHLLSLKPE 439
           AN + S  PE
Sbjct: 376 ANSIFSEMPE 385



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 86/187 (45%), Gaps = 13/187 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H+Q+I+LG        N LI  Y +C +V+ A  +   MP  D VSW +++ A  Q 
Sbjct: 443 QQIHSQVIRLGHDSGLSAGNALITMYSRCGVVESAESVFLTMPYVDSVSWNAMIAALAQH 502

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC----FVLSPFCD 138
               K I +F  M+  D L PD   F +++ AC   G  + G+         + ++P  D
Sbjct: 503 GHGVKAIELFEQMMKEDIL-PDRITFLTILTACNHAGLIKEGRHYFDTMCTRYGITPGED 561

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGRKKDAMEIFEQA 197
                + L+D+  + G+   A++V  S+  +     W A+L+      R    ME+  QA
Sbjct: 562 H---YARLIDLLCRAGMFLKAQSVIKSMPFEAGAPIWEALLAG----CRIHGNMELGIQA 614

Query: 198 PVRNLFL 204
             R L L
Sbjct: 615 ADRLLEL 621


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 231/635 (36%), Positives = 361/635 (56%), Gaps = 35/635 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQ-------------- 55
           L  CA  +     + +H  ++KLGL    P+ N+++  YGKC   +              
Sbjct: 354 LSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSV 413

Query: 56  ---------YAHH--------LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                    Y H         + E M +R  VSW +I+  YNQ  L    +  FS ML+ 
Sbjct: 414 SSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSA 473

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
             ++PD F   S++ AC +L   ++GKQ+H+  + +       + ++L+  YAK G    
Sbjct: 474 SSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVET 533

Query: 159 ARAVFDSIKLK--NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
           AR + D   +   N +S+TA+L  Y + G  K A EIF+    R++  WTA++ G  Q+ 
Sbjct: 534 ARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNG 593

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
              +A   F  M   G +  +   L++++ ACA+ A L+ GKQIH   I    E  + +S
Sbjct: 594 QNDEAMELFRSMILIGPE-PNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVS 652

Query: 277 NAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
           NAI+ +YA+   +  A+ +F ++  RK+ ++WTS+IV  AQHG  E+ + L++EMV  GV
Sbjct: 653 NAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGV 712

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
           KP+ +T+VG++ AC+H G V KG++ ++ M  ++GI P + HY C++DL +R+G L EA 
Sbjct: 713 KPDHITYVGVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAH 772

Query: 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
             I+ MP  PD   W +LL+AC+  +N ++    A  LLS+ P +  +Y  L+NVY++  
Sbjct: 773 EFIQRMPVAPDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHNSGAYSALANVYSACG 832

Query: 456 MWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK 515
            W   +++ KL     VKKE G+S+       H+F A +  HP +D I+    E+  E+K
Sbjct: 833 RWNDAARIWKLRKDKGVKKETGFSWTHVRGKVHVFGADDVLHPQRDSIYRKAAEMWEEIK 892

Query: 516 RRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHI 575
           + G+VPD +SVLHD++ + KE  L  HSE+LA+A+GL+ +   T LR++KNLRVC DCH 
Sbjct: 893 KAGFVPDLNSVLHDVDDELKEELLSRHSEKLAIAFGLISTPEKTTLRIMKNLRVCNDCHT 952

Query: 576 VMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +K IS+   REI+VRDATR+HHF+DG CSC D+W
Sbjct: 953 AIKFISKFVDREIIVRDATRFHHFRDGYCSCKDYW 987



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/412 (25%), Positives = 194/412 (47%), Gaps = 35/412 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+L+  Y K   +  AH +  EMP RD VSW  ++   N++      +  F  M++ +  
Sbjct: 285 NSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVS-EGF 343

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P  F   +++ +C ++ A  +G++VH   V         V +S++ MY KCG    ARA
Sbjct: 344 APSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARA 403

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF+ +++++  SW  M+S Y   GR + A+ +FE    R++  W  +++G  Q+  +  A
Sbjct: 404 VFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMA 463

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M        D   ++S++ ACAN  +L++GKQ+H  ++  G      I NA++ 
Sbjct: 464 LKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQIMNALIS 523

Query: 282 MYAKC---------------------------------SDIIAAKDIFGRMRRKDVVSWT 308
            YAK                                   D   A++IF  M  +DV++WT
Sbjct: 524 TYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWT 583

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++IVG  Q+GQ +E + L+  M+  G +PN  T   ++ AC+ +  +  G+++    I  
Sbjct: 584 AMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRS 643

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
                S+     ++ + +RSG +  A  +   + +  +  TW +++ A   H
Sbjct: 644 LQ-EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQH 694



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 192/414 (46%), Gaps = 51/414 (12%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN----A 159
           DH+  A L++ C +      G+ +HA  V +       + ++L+  YA  G+       A
Sbjct: 210 DHY--ARLLQLCRTAVNPSAGRAIHAHAVKAGLLVSTYLCNNLLAYYASVGVSRGCFREA 267

Query: 160 RAVFDSIKL--KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
           R +FD I    +N+ +W ++LS YA+SGR  DA  +F + P R+   WT ++ GL +S  
Sbjct: 268 RCLFDDIPYARRNAFTWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGR 327

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             DA  +F++M  EG        L++++ +CA      +G+++H  V+ LG  SC+ ++N
Sbjct: 328 FWDAVKTFLDMVSEGF-APSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVAN 386

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           +++ MY KC D   A+ +F RM+ + V SW  ++      G+ E  +++++ MV   +  
Sbjct: 387 SVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSI-- 444

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
             V++  +I   +  GL G   K F  M+                               
Sbjct: 445 --VSWNTIIAGYNQNGLDGMALKFFSRMLS------------------------------ 472

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
             A   EPD  T  ++LSAC + R  +MG ++ +++  L+   P S  +++ + ++ A  
Sbjct: 473 --ASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYI--LRTGMPCSSQIMNALISTYAKS 528

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELD 511
             V   R++M    V      S+    +G      G+T      EIF+++   D
Sbjct: 529 GSVETARRIMDQAVVADLNVISFTALLEG--YVKLGDTKQ--AREIFDIMNNRD 578


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 236/588 (40%), Positives = 336/588 (57%), Gaps = 33/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LH    KLG      + NTL++ Y  C  +  A  + ++M  +  VSWA+++ AY Q 
Sbjct: 157 KQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQW 216

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           +LP + I +F  M  +  ++P+     +++ AC         KQVH     +      V+
Sbjct: 217 DLPHEAIKLFRRM-EIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVL 275

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            S+L+D+Y KCG    AR                               ++F + P +NL
Sbjct: 276 TSALMDVYCKCGCYPLAR-------------------------------DLFNKMPEKNL 304

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
           F W  +++G V+  +  +A   F EM+  GV   D + ++S++ AC +   LELGK +H 
Sbjct: 305 FCWNIMINGHVEDSDYEEALSLFNEMQLSGVK-GDKVTMASLLIACTHLGALELGKWLHV 363

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +     E  + +  A+VDMYAKC  I +A  +F  M  KDV++WT++IVG A  GQ  +
Sbjct: 364 YIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLK 423

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L+ EM  + VKP+ +TFVG++ ACSH GLV +G   F SM   YGI PS++HY C++
Sbjct: 424 ALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMV 483

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+L R+G + EAE+LI+ MP  PD      LLSAC+ H N  +  R A  L+ L P++  
Sbjct: 484 DMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNGG 543

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y+LLSN+Y+S   W+   K+R+LM    +KK PG S IE G   H F  G+ SHP   E
Sbjct: 544 TYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEVGGVVHEFVKGDVSHPQSSE 603

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+E L ++   +K  GYVPD S VL DM++KEKE +L  HSE+LA+A+GLL + PGT +R
Sbjct: 604 IYETLDDMMRRLKSAGYVPDKSEVLFDMDEKEKENELSLHSEKLAIAFGLLSTTPGTPIR 663

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           VVKNLRVC DCH  MK IS +  REI+VRD  R+HHF  G CSC DFW
Sbjct: 664 VVKNLRVCSDCHSAMKFISEVYNREIIVRDRNRFHHFTKGSCSCRDFW 711



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/400 (30%), Positives = 196/400 (49%), Gaps = 50/400 (12%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL-----VQYAHHLLEEMPQRDHVSWASIL 76
           +K +HAQ+++  L    P   + I A+  C L     + YA  +  ++P     +  SI+
Sbjct: 56  LKQIHAQMLRTCLF-VDPFSASKIVAF--CALHDSGSLPYARLVFNQIPNPTTFTCNSII 112

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
             Y   NLP++ I +F  ++ L  L PD F F SL K+CG L     GKQ+H       F
Sbjct: 113 RGYTNKNLPRQAI-LFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---GKQLHCHSTKLGF 168

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             D  ++++L++MY+ CG   +AR VFD +  K+ VSW  M+ AYA+     +A+++F  
Sbjct: 169 ASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLF-- 226

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP--LVLSSIVGACANFAVL 254
                                           RR  +  V P  + L +++ ACA    L
Sbjct: 227 --------------------------------RRMEIASVKPNEITLVNVLTACARSRDL 254

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
           E  KQ+H  +   G      +++A++D+Y KC     A+D+F +M  K++  W  +I G 
Sbjct: 255 ETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGH 314

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
            +    EE L+L++EM  +GVK ++VT   L+ AC+H+G +  G K     IE   I   
Sbjct: 315 VEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELG-KWLHVYIEKEKIEVD 373

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           +   T L+D+ ++ G ++ A  + + MP E D  TW AL+
Sbjct: 374 VALGTALVDMYAKCGSIESAMRVFQEMP-EKDVMTWTALI 412



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/187 (31%), Positives = 98/187 (52%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CAR +   T K +H  I + G+  +  L + L+D Y KC     A  L  +MP+++ 
Sbjct: 245 LTACARSRDLETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNL 304

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
             W  ++  + + +  ++ +S+F+ M  L  ++ D    ASL+ AC  LGA  LGK +H 
Sbjct: 305 FCWNIMINGHVEDSDYEEALSLFNEM-QLSGVKGDKVTMASLLIACTHLGALELGKWLHV 363

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                    D  + ++LVDMYAKCG   +A  VF  +  K+ ++WTA++   A  G+   
Sbjct: 364 YIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLK 423

Query: 190 AMEIFEQ 196
           A+E+F +
Sbjct: 424 ALELFHE 430



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 84/209 (40%), Gaps = 43/209 (20%)

Query: 10  LRVCARHQIALTV-KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L +   H  AL + K LH  I K  +     L   L+D Y KC  ++ A  + +EMP++D
Sbjct: 345 LLIACTHLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKD 404

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            ++W +++          K + +F  M  + +++PD   F  ++ AC            H
Sbjct: 405 VMTWTALIVGLAMCGQGLKALELFHEM-QMSEVKPDAITFVGVLAACS-----------H 452

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-----WTAMLSAYAR 183
           A                        GL N   A F+S+  K  +      +  M+    R
Sbjct: 453 A------------------------GLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGR 488

Query: 184 SGRKKDAMEIFEQAPVR-NLFLWTALVSG 211
           +GR  +A ++ +  P+  + F+   L+S 
Sbjct: 489 AGRIAEAEDLIQNMPMAPDYFVLVGLLSA 517


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  454 bits (1167), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 235/603 (38%), Positives = 366/603 (60%), Gaps = 39/603 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM-PQRD 68
           +++CA  +     K LH Q+IK G      +   L+ AY KC  +  A  L   M   ++
Sbjct: 301 IKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQN 360

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW +I++ Y Q     + +++F  M   + ++P+HF +++++ A  ++  +    Q+H
Sbjct: 361 VVSWTAIISGYVQNGRTDRAMNLFCQMRR-EGVRPNHFTYSTILTANAAVSPS----QIH 415

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           A  V + + +   V ++L D Y+K G  N                               
Sbjct: 416 ALVVKTNYENSPSVGTALSDSYSKIGDAN------------------------------- 444

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A +IFE    +++  W+A++SG  Q  +   A   F+++ +EGV+  +    SS++ AC
Sbjct: 445 EAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVE-PNEFTFSSVLNAC 503

Query: 249 AN-FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
           A   A +E GKQ H   I  G+ + L +S+A+V MYAK  +I +A ++F R   +D+VSW
Sbjct: 504 AAPTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSW 563

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            S+I G AQHG  +++L +++EM S  ++ + +TF+G+I AC+H GLV +G++ F  M++
Sbjct: 564 NSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVK 623

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
           DY I P+++HY+C++DL SR+G L++A +LI  MPF      W  LL+AC+ H N ++G 
Sbjct: 624 DYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGE 683

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
             A  L+SL+P+D ++Y+LLSN+YA+A  WQ  +KVRKLM + +VKKE GYS+IE    +
Sbjct: 684 LAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWIEVKNKT 743

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
             F AG+ SHP  D I+  L EL   +K  GY PDT  VLHD+E++ KE  L  HSERLA
Sbjct: 744 FSFMAGDLSHPQSDRIYLKLEELSIRLKDAGYYPDTKYVLHDVEEEHKEVILSQHSERLA 803

Query: 548 VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
           +A+GL+ + PGT +++VKNLRVCGDCH V+K+IS+I  R+IVVRD+ R+HHFK G CSC 
Sbjct: 804 IAFGLIATPPGTPIQIVKNLRVCGDCHTVIKLISKIEGRDIVVRDSNRFHHFKGGSCSCG 863

Query: 608 DFW 610
           D+W
Sbjct: 864 DYW 866



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 132/462 (28%), Positives = 229/462 (49%), Gaps = 45/462 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+VC      +  K +H Q IK G  +   +  +L+D Y K + V+    + +EM  ++ 
Sbjct: 99  LKVCGCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNV 158

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S+L  Y Q  L ++ + +FS M  L+ ++P+ F FA+++    + GA   G QVH 
Sbjct: 159 VSWTSLLAGYRQNGLNEQALKLFSQM-QLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHT 217

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + S       V +S+V+MY+K  + ++A+AVFDS++ +N+VSW +M++ +  +G    
Sbjct: 218 MVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGL--- 274

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
                                       +++AF  F  MR EGV +    + ++++  CA
Sbjct: 275 ----------------------------DLEAFELFYRMRLEGVKLTQT-IFATVIKLCA 305

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-KDVVSWT 308
           N   +   KQ+H  VI  G +  L I  A++  Y+KCS+I  A  +F  M   ++VVSWT
Sbjct: 306 NIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWT 365

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           +II G  Q+G+ +  + L+ +M   GV+PN  T+  ++ A + V        + K+   +
Sbjct: 366 AIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSPSQIHALVVKT---N 422

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           Y  +PS+   T L D  S+ G  +EA  + + +  E D   W+A+LS      + E   +
Sbjct: 423 YENSPSVG--TALSDSYSKIGDANEAAKIFELID-EKDIVAWSAMLSGYAQMGDIEGAVK 479

Query: 429 VANHLLSLKPE--DPSSYILLSNVYASAAMWQHVSKVRKLMS 468
           +    L L  E  +P+ +   S + A AA    V + ++  S
Sbjct: 480 I---FLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHS 518



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 211/458 (46%), Gaps = 46/458 (10%)

Query: 56  YAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115
           ++  L +E PQ+       +L  +++ +  ++ +++F   L       D    + ++K C
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLF-LGLRRSGSPTDGSSLSCVLKVC 102

Query: 116 GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWT 175
           G L    +GKQVH   +   F +D  V +SLVDMY K     +   VFD +++KN VSWT
Sbjct: 103 GCLFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWT 162

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
           ++L+ Y ++G  + A+++F Q                               M+ EG+  
Sbjct: 163 SLLAGYRQNGLNEQALKLFSQ-------------------------------MQLEGIK- 190

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
            +P   ++++G  A    +E G Q+H +VI  G +S +F+ N++V+MY+K   +  AK +
Sbjct: 191 PNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAV 250

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
           F  M  ++ VSW S+I G   +G   E   L+  M   GVK  +  F  +I  C+++  +
Sbjct: 251 FDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEM 310

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
              ++L   +I++ G    L   T L+   S+   +D+A  L   M    +  +W A++S
Sbjct: 311 SFAKQLHCQVIKN-GSDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIIS 369

Query: 416 ACKHHRNTEMGTRVANHLLSLKPED--PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473
               +  T+   R  N    ++ E   P+ +   + + A+AA+    S++  L+     +
Sbjct: 370 GYVQNGRTD---RAMNLFCQMRREGVRPNHFTYSTILTANAAV--SPSQIHALVVKTNYE 424

Query: 474 KEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELD 511
             P          S I  A E +     +IFEL+ E D
Sbjct: 425 NSPSVGTALSDSYSKIGDANEAA-----KIFELIDEKD 457


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/592 (39%), Positives = 345/592 (58%), Gaps = 38/592 (6%)

Query: 26   HAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLP 85
            H Q    G      + + LID Y KC  ++ A  L +E+P R+ VSW S++T Y Q    
Sbjct: 1165 HQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQA 1224

Query: 86   QKTISIFSTMLAL-------DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
               + +F   L         + +  D  V  S++ AC  +    + + VH   V   F  
Sbjct: 1225 DNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDG 1284

Query: 139  DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
               V ++L+D YAKCG P  ++ VFD ++ K+ +SW +M++ YA+SG   +A+E+F    
Sbjct: 1285 SIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFH--- 1341

Query: 199  VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
                        G+V               R  GV   + + LS+++ ACA+   L  GK
Sbjct: 1342 ------------GMV---------------RHVGVR-YNAVTLSAVLLACAHAGALRAGK 1373

Query: 259  QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
             IH  VI +  E  + +  +I+DMY KC  +  AK  F RM+ K+V SWT+++ G   HG
Sbjct: 1374 CIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHG 1433

Query: 319  QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
            +A+E L ++ +MV AGVKPN +TFV ++ ACSH GLV +G   F +M   Y I P ++HY
Sbjct: 1434 RAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHY 1493

Query: 379  TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
             C++DL  R+G L+EA NLIK M  +PD   W +LL AC+ H+N ++G   A  L  L P
Sbjct: 1494 GCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDP 1553

Query: 439  EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
            ++   Y+LLSN+YA A  W  V ++R LM   ++ K PG+S +E     H+F  G+  HP
Sbjct: 1554 DNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHP 1613

Query: 499  LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
              + I++ L +L  E+++ GYVP+ +SVLHD++++EKE  L  HSE+LAVA+G++ S PG
Sbjct: 1614 HHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPG 1673

Query: 559  TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            T + ++KNLRVCGDCH V+K+IS++  R+ VVRD+ R+HHFKDG CSC D+W
Sbjct: 1674 TTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 1725



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 120/373 (32%), Positives = 201/373 (53%), Gaps = 2/373 (0%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           ++ +HA+II+ GL     L   LI  Y     + YA  L  ++      +W  I+ A   
Sbjct: 43  LRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTI 102

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
             L ++ + ++  M+    +  D F F  ++KAC +  +  LGK VH   +   F  D  
Sbjct: 103 NGLSEQALMLYKNMVC-QGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVF 161

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V+++L+D Y KCG    A  VF+ ++++N VSWT ++S     G  ++A  IF++ P +N
Sbjct: 162 VQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKN 221

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           +  WTA+++G ++++   +A   F  M+ E +   +   + S++ AC    +L LG+ IH
Sbjct: 222 VVSWTAMINGYIRNQQPEEALELFKRMQAENI-FPNEYTMVSLIKACTEMGILTLGRGIH 280

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
              I    E  +++  A++DMY+KC  I  A ++F  M RK + +W S+I     HG  +
Sbjct: 281 DYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQ 340

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L L+ EM    VKP+ +TF+G++ AC H+  V +G   F  M + YGI P  +HY C+
Sbjct: 341 EALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECM 400

Query: 382 LDLLSRSGHLDEA 394
            +L +RS +LDEA
Sbjct: 401 TELYARSNNLDEA 413



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 177/356 (49%), Gaps = 38/356 (10%)

Query: 71   SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC 130
            SW S++    +     + +  FS++  L  L P    F   +K+C +L     G+  H  
Sbjct: 1109 SWNSVIADLARGGDSVEALRAFSSLRKLG-LIPTRSSFPCTIKSCSALCDLVSGRMSHQQ 1167

Query: 131  FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
              +  F  D  V S+L+DMY+KCG   +ARA+FD I L+N VSWT+M++ Y ++ +  +A
Sbjct: 1168 AFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNA 1227

Query: 191  MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLSSIVGACA 249
            + +F+                 ++   E++          +G ++ +D +V+ S++ AC+
Sbjct: 1228 LLLFKD---------------FLEEETEVE----------DGNNVPLDSVVMVSVLSACS 1262

Query: 250  NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
              +   + + +HG V+  G++  + + N ++D YAKC   + +K +F  M  KD +SW S
Sbjct: 1263 RVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNS 1322

Query: 310  IIVGTAQHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            +I   AQ G + E L ++  MV   GV+ N VT   ++ AC+H G +  G+      I D
Sbjct: 1323 MIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGK-----CIHD 1377

Query: 369  YGITPSLQHYTC----LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
              I   L++  C    ++D+  + G ++ A+     M  E +  +W A+++    H
Sbjct: 1378 QVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK-EKNVKSWTAMVAGYGMH 1432



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 144/331 (43%), Gaps = 73/331 (22%)

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           +Q+HA  + S   +D ++   L+ +Y+  G    A  +F  I+   + +W  ++ A   +
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G  + A+ +++                                M  +G+   D      +
Sbjct: 104 GLSEQALMLYKN-------------------------------MVCQGI-AADKFTFPFV 131

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS----------------- 287
           + AC NF  ++LGK +HG +I  G+   +F+ N ++D Y KC                  
Sbjct: 132 IKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNV 191

Query: 288 --------------DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
                         D+  A+ IF  +  K+VVSWT++I G  ++ Q EE L L+  M + 
Sbjct: 192 VSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAE 251

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ----HYTCLLDLLSRSG 389
            + PNE T V LI AC+ +G++  GR      I DY I   ++      T L+D+ S+ G
Sbjct: 252 NIFPNEYTMVSLIKACTEMGILTLGRG-----IHDYAIKNCIEIGVYLGTALIDMYSKCG 306

Query: 390 HLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            + +A  + + MP     PTW +++++   H
Sbjct: 307 SIKDAIEVFETMP-RKSLPTWNSMITSLGVH 336



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/310 (25%), Positives = 142/310 (45%), Gaps = 46/310 (14%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L  C+R       + +H  ++K G      + NTL+DAY KC     +  + + M ++D 
Sbjct: 1258 LSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDD 1317

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            +SW S++  Y Q+ L  + + +F  M+    ++ +    ++++ AC   GA R GK +H 
Sbjct: 1318 ISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHD 1377

Query: 130  CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
              +      +  V +S++DMY KCG    A+  FD +K KN  SWTAM++ Y   GR K+
Sbjct: 1378 QVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKE 1437

Query: 190  AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            A++I                               F +M R GV   + +   S++ AC+
Sbjct: 1438 ALDI-------------------------------FYKMVRAGVK-PNYITFVSVLAACS 1465

Query: 250  NFAVLELG-------KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            +  ++E G       K  + +   + +  C+      VD++ +   +  A ++  RM+ K
Sbjct: 1466 HAGLVEEGWHWFNAMKHKYDIEPGIEHYGCM------VDLFGRAGCLNEAYNLIKRMKMK 1519

Query: 303  -DVVSWTSII 311
             D V W S++
Sbjct: 1520 PDFVVWGSLL 1529



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 66/268 (24%), Positives = 119/268 (44%), Gaps = 44/268 (16%)

Query: 157  NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
            N A   +  +   N  SW ++++  AR G   +A+  F  + +R L        GL+ +R
Sbjct: 1093 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAF--SSLRKL--------GLIPTR 1142

Query: 217  NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
            +                    P  + S    C+    L  G+  H      G+E+ LF+S
Sbjct: 1143 SSF------------------PCTIKS----CSALCDLVSGRMSHQQAFVFGFETDLFVS 1180

Query: 277  NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA--- 333
            +A++DMY+KC  +  A+ +F  +  ++VVSWTS+I G  Q+ QA+  L L+ + +     
Sbjct: 1181 SALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDFLEEETE 1240

Query: 334  -----GVKPNEVTFVGLIYACSHVGLVGKG-RKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
                  V  + V  V ++ ACS V   GKG  +     +   G   S+     L+D  ++
Sbjct: 1241 VEDGNNVPLDSVVMVSVLSACSRVS--GKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAK 1298

Query: 388  SGHLDEAENLIKAMPFEPDEPTWAALLS 415
             G    ++ +   M  E D+ +W ++++
Sbjct: 1299 CGQPLVSKKVFDWME-EKDDISWNSMIA 1325



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 10/192 (5%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L  CA        K +H Q+IK+ L     +  ++ID Y KC  V+ A    + M +++ 
Sbjct: 1360 LLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNV 1419

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
             SW +++  Y      ++ + IF  M+    ++P++  F S++ AC   G    G     
Sbjct: 1420 KSWTAMVAGYGMHGRAKEALDIFYKMVRAG-VKPNYITFVSVLAACSHAGLVEEGWHWFN 1478

Query: 126  QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARS 184
             +   + + P  +       +VD++ + G  N A  +   +K+K + V W ++L A  R 
Sbjct: 1479 AMKHKYDIEPGIEH---YGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGA-CRI 1534

Query: 185  GRKKDAMEIFEQ 196
             +  D  EI  Q
Sbjct: 1535 HKNVDLGEIAAQ 1546


>gi|356511265|ref|XP_003524347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 750

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/569 (39%), Positives = 344/569 (60%), Gaps = 10/569 (1%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+  Y K +++  A  L +++P RD +SW ++++ Y Q     +   +F      +  
Sbjct: 192 NCLMGGYVKRNMLGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFE-----ESP 246

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             D F + ++V A    G     ++V   F   P    ++  + ++  YA+    +  R 
Sbjct: 247 VRDVFTWTAMVYAYVQDGMLDEARRV---FDEMP-QKREMSYNVMIAGYAQYKRMDMGRE 302

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F+ +   N  SW  M+S Y ++G    A  +F+  P R+   W A+++G  Q+    +A
Sbjct: 303 LFEEMPFPNIGSWNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEA 362

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
               +EM+R+G + ++       + ACA+ A LELGKQ+HG V+  GYE    + NA+V 
Sbjct: 363 MNMLVEMKRDG-ESLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVG 421

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  I  A D+F  ++ KD+VSW +++ G A+HG   + L +++ M++AGVKP+E+T
Sbjct: 422 MYCKCGCIDEAYDVFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEIT 481

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
            VG++ ACSH GL  +G + F SM +DYGITP+ +HY C++DLL R+G L+EA+NLI+ M
Sbjct: 482 MVGVLSACSHTGLTDRGTEYFHSMNKDYGITPNSKHYACMIDLLGRAGCLEEAQNLIRNM 541

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           PFEPD  TW ALL A + H N E+G + A  +  ++P +   Y+LLSN+YA++  W  VS
Sbjct: 542 PFEPDAATWGALLGASRIHGNMELGEQAAEMVFKMEPHNSGMYVLLSNLYAASGRWVDVS 601

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           K+R  M  + V+K PGYS++E     H F  G+  HP K  I+  L ELD +MK  GYV 
Sbjct: 602 KMRLKMRQIGVQKTPGYSWVEVQNKIHTFTVGDCFHPEKGRIYAFLEELDLKMKHEGYVS 661

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
            T  VLHD+E++EK+  L +HSE+LAVA+G+L    G  +RV+KNLRVC DCH  +K IS
Sbjct: 662 STKLVLHDVEEEEKKHMLKYHSEKLAVAFGILTMPSGKPIRVMKNLRVCEDCHNAIKHIS 721

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I  R I+VRD+ RYHHF +G CSC D+W
Sbjct: 722 KIVGRLIIVRDSHRYHHFSEGICSCRDYW 750



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/425 (25%), Positives = 197/425 (46%), Gaps = 63/425 (14%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N ++  Y +   ++ A  L + MP++D VSW ++L+ Y ++    +   +F  M   + +
Sbjct: 99  NLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARDVFDRMPHKNSI 158

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             +  + A+ V++     A RL +      ++S  C        L+  Y K  +  +AR 
Sbjct: 159 SWNG-LLAAYVRSGRLEEARRLFESKSDWELISCNC--------LMGGYVKRNMLGDARQ 209

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +FD I +++ +SW  M+S YA+ G    A  +FE++PVR++F WTA+V   VQ     +A
Sbjct: 210 LFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDVFTWTAMVYAYVQDGMLDEA 269

Query: 222 FYSFIEM--RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS--- 276
              F EM  +RE       +  + ++   A +  +++G+++        +E   F +   
Sbjct: 270 RRVFDEMPQKRE-------MSYNVMIAGYAQYKRMDMGREL--------FEEMPFPNIGS 314

Query: 277 -NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
            N ++  Y +  D+  A+++F  M ++D VSW +II G AQ+G  EE + +  EM   G 
Sbjct: 315 WNIMISGYCQNGDLAQARNLFDMMPQRDSVSWAAIIAGYAQNGLYEEAMNMLVEMKRDGE 374

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMI-------------------------EDYG 370
             N  TF   + AC+ +  +  G+++   ++                         E Y 
Sbjct: 375 SLNRSTFCCALSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYD 434

Query: 371 ITPSLQH-----YTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHHRN 422
           +   +QH     +  +L   +R G   +A  + ++M     +PDE T   +LSAC H   
Sbjct: 435 VFQGVQHKDIVSWNTMLAGYARHGFGRQALTVFESMITAGVKPDEITMVGVLSACSHTGL 494

Query: 423 TEMGT 427
           T+ GT
Sbjct: 495 TDRGT 499



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 160/351 (45%), Gaps = 46/351 (13%)

Query: 136 FCDDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
           F D   VK +  +  + + G  + A  VFD++ L+NSVS+ AM+S Y R+ +   A ++F
Sbjct: 28  FEDPHTVKCTKAISTHMRNGHCDLALCVFDAMPLRNSVSYNAMISGYLRNAKFSLARDLF 87

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV--------------------D 234
           ++ P ++LF W  +++G  ++R   DA   F  M  + V                    D
Sbjct: 88  DKMPHKDLFSWNLMLTGYARNRRLRDARMLFDSMPEKDVVSWNAMLSGYVRSGHVDEARD 147

Query: 235 IVD------PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
           + D       +  + ++ A      LE  +++          SC    N ++  Y K + 
Sbjct: 148 VFDRMPHKNSISWNGLLAAYVRSGRLEEARRLFESKSDWELISC----NCLMGGYVKRNM 203

Query: 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
           +  A+ +F ++  +D++SW ++I G AQ G   +   L++E     V     T+  ++YA
Sbjct: 204 LGDARQLFDQIPVRDLISWNTMISGYAQDGDLSQARRLFEESPVRDV----FTWTAMVYA 259

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
               G++ + R++F  M +   ++     Y  ++   ++   +D    L + MPF P+  
Sbjct: 260 YVQDGMLDEARRVFDEMPQKREMS-----YNVMIAGYAQYKRMDMGRELFEEMPF-PNIG 313

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPE-DPSSYILLSNVYASAAMWQ 458
           +W  ++S   + +N ++    A +L  + P+ D  S+  +   YA   +++
Sbjct: 314 SWNIMISG--YCQNGDLAQ--ARNLFDMMPQRDSVSWAAIIAGYAQNGLYE 360



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 91/193 (47%), Gaps = 13/193 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K +H Q+++ G  +   + N L+  Y KC  +  A+ + + +  +D 
Sbjct: 385 LSACADIAALELGKQVHGQVVRTGYEKGCLVGNALVGMYCKCGCIDEAYDVFQGVQHKDI 444

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ--- 126
           VSW ++L  Y +    ++ +++F +M+    ++PD      ++ AC   G T  G +   
Sbjct: 445 VSWNTMLAGYARHGFGRQALTVFESMITAG-VKPDEITMVGVLSACSHTGLTDRGTEYFH 503

Query: 127 -VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARS 184
            ++  + ++P   +    + ++D+  + G    A+ +  ++  + ++ +W A+L A    
Sbjct: 504 SMNKDYGITP---NSKHYACMIDLLGRAGCLEEAQNLIRNMPFEPDAATWGALLGA---- 556

Query: 185 GRKKDAMEIFEQA 197
            R    ME+ EQA
Sbjct: 557 SRIHGNMELGEQA 569


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/592 (39%), Positives = 345/592 (58%), Gaps = 38/592 (6%)

Query: 26   HAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLP 85
            H Q    G      + + LID Y KC  ++ A  L +E+P R+ VSW S++T Y Q    
Sbjct: 2038 HQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQA 2097

Query: 86   QKTISIFSTMLAL-------DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
               + +F   L         + +  D  V  S++ AC  +    + + VH   V   F  
Sbjct: 2098 DNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVHGFVVKKGFDG 2157

Query: 139  DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
               V ++L+D YAKCG P  ++ VFD ++ K+ +SW +M++ YA+SG   +A+E+F    
Sbjct: 2158 SIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFH--- 2214

Query: 199  VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
                        G+V               R  GV   + + LS+++ ACA+   L  GK
Sbjct: 2215 ------------GMV---------------RHVGVR-YNAVTLSAVLLACAHAGALRAGK 2246

Query: 259  QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
             IH  VI +  E  + +  +I+DMY KC  +  AK  F RM+ K+V SWT+++ G   HG
Sbjct: 2247 CIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHG 2306

Query: 319  QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
            +A+E L ++ +MV AGVKPN +TFV ++ ACSH GLV +G   F +M   Y I P ++HY
Sbjct: 2307 RAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHY 2366

Query: 379  TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
             C++DL  R+G L+EA NLIK M  +PD   W +LL AC+ H+N ++G   A  L  L P
Sbjct: 2367 GCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDP 2426

Query: 439  EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
            ++   Y+LLSN+YA A  W  V ++R LM   ++ K PG+S +E     H+F  G+  HP
Sbjct: 2427 DNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKPPGFSLVELKGRVHVFLVGDKEHP 2486

Query: 499  LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
              + I++ L +L  E+++ GYVP+ +SVLHD++++EKE  L  HSE+LAVA+G++ S PG
Sbjct: 2487 HHEMIYKYLEKLTLELQKIGYVPNMTSVLHDVDEEEKEIILRVHSEKLAVAFGVMNSAPG 2546

Query: 559  TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            T + ++KNLRVCGDCH V+K+IS++  R+ VVRD+ R+HHFKDG CSC D+W
Sbjct: 2547 TTINIIKNLRVCGDCHTVIKLISKLVHRDFVVRDSKRFHHFKDGVCSCGDYW 2598



 Score =  231 bits (589), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 120/373 (32%), Positives = 201/373 (53%), Gaps = 2/373 (0%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           ++ +HA+II+ GL     L   LI  Y     + YA  L  ++      +W  I+ A   
Sbjct: 43  LRQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTI 102

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
             L ++ + ++  M+    +  D F F  ++KAC +  +  LGK VH   +   F  D  
Sbjct: 103 NGLSEQALMLYKNMVC-QGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVF 161

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V+++L+D Y KCG    A  VF+ ++++N VSWT ++S     G  ++A  IF++ P +N
Sbjct: 162 VQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKN 221

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           +  WTA+++G ++++   +A   F  M+ E +   +   + S++ AC    +L LG+ IH
Sbjct: 222 VVSWTAMINGYIRNQQPEEALELFKRMQAENI-FPNEYTMVSLIKACTEMGILTLGRGIH 280

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
              I    E  +++  A++DMY+KC  I  A ++F  M RK + +W S+I     HG  +
Sbjct: 281 DYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQ 340

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L L+ EM    VKP+ +TF+G++ AC H+  V +G   F  M + YGI P  +HY C+
Sbjct: 341 EALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYECM 400

Query: 382 LDLLSRSGHLDEA 394
            +L +RS +LDEA
Sbjct: 401 TELYARSNNLDEA 413



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 177/356 (49%), Gaps = 38/356 (10%)

Query: 71   SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC 130
            SW S++    +     + +  FS++  L  L P    F   +K+C +L     G+  H  
Sbjct: 1982 SWNSVIADLARGGDSVEALRAFSSLRKLG-LIPTRSSFPCTIKSCSALCDLVSGRMSHQQ 2040

Query: 131  FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
              +  F  D  V S+L+DMY+KCG   +ARA+FD I L+N VSWT+M++ Y ++ +  +A
Sbjct: 2041 AFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNA 2100

Query: 191  MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLSSIVGACA 249
            + +F+                 ++   E++          +G ++ +D +V+ S++ AC+
Sbjct: 2101 LLLFKD---------------FLEEETEVE----------DGNNVPLDSVVMVSVLSACS 2135

Query: 250  NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
              +   + + +HG V+  G++  + + N ++D YAKC   + +K +F  M  KD +SW S
Sbjct: 2136 RVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNS 2195

Query: 310  IIVGTAQHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            +I   AQ G + E L ++  MV   GV+ N VT   ++ AC+H G +  G+      I D
Sbjct: 2196 MIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGK-----CIHD 2250

Query: 369  YGITPSLQHYTC----LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
              I   L++  C    ++D+  + G ++ A+     M  E +  +W A+++    H
Sbjct: 2251 QVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMK-EKNVKSWTAMVAGYGMH 2305



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 146/331 (44%), Gaps = 73/331 (22%)

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           +Q+HA  + S   +D ++   L+ +Y+  G    A  +F  I+   + +W  ++ A   +
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G       + EQA    L L+  +V                     +G+   D      +
Sbjct: 104 G-------LSEQA----LMLYKNMVC--------------------QGI-AADKFTFPFV 131

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS----------------- 287
           + AC NF  ++LGK +HG +I  G+   +F+ N ++D Y KC                  
Sbjct: 132 IKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNV 191

Query: 288 --------------DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
                         D+  A+ IF  +  K+VVSWT++I G  ++ Q EE L L+  M + 
Sbjct: 192 VSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAE 251

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ----HYTCLLDLLSRSG 389
            + PNE T V LI AC+ +G++  GR      I DY I   ++      T L+D+ S+ G
Sbjct: 252 NIFPNEYTMVSLIKACTEMGILTLGRG-----IHDYAIKNCIEIGVYLGTALIDMYSKCG 306

Query: 390 HLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            + +A  + + MP     PTW +++++   H
Sbjct: 307 SIKDAIEVFETMP-RKSLPTWNSMITSLGVH 336



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 144/320 (45%), Gaps = 46/320 (14%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L  C+R       + +H  ++K G      + NTL+DAY KC     +  + + M ++D 
Sbjct: 2131 LSACSRVSGKGITEGVHGFVVKKGFDGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDD 2190

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            +SW S++  Y Q+ L  + + +F  M+    ++ +    ++++ AC   GA R GK +H 
Sbjct: 2191 ISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHD 2250

Query: 130  CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
              +      +  V +S++DMY KCG    A+  FD +K KN  SWTAM++ Y   GR K+
Sbjct: 2251 QVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKE 2310

Query: 190  AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            A++I                               F +M R GV   + +   S++ AC+
Sbjct: 2311 ALDI-------------------------------FYKMVRAGVK-PNYITFVSVLAACS 2338

Query: 250  NFAVLELG-------KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            +  ++E G       K  + +   + +  C+      VD++ +   +  A ++  RM+ K
Sbjct: 2339 HAGLVEEGWHWFNAMKHKYDIEPGIEHYGCM------VDLFGRAGCLNEAYNLIKRMKMK 2392

Query: 303  -DVVSWTSIIVGTAQHGQAE 321
             D V W S++     H   +
Sbjct: 2393 PDFVVWGSLLGACRIHKNVD 2412



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 145/339 (42%), Gaps = 66/339 (19%)

Query: 93   STMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK 152
            ST   LDK +   + +A L ++            ++ C V    C D +  +S++     
Sbjct: 1910 STTTKLDKDEKGSYPYACLSES----------PSIYVCVVNFYECFDGITYNSIL----- 1954

Query: 153  CGLP-------NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLW 205
             G+P       N A   +  +   N  SW ++++  AR G   +A+  F  + +R L   
Sbjct: 1955 FGVPSGREDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAF--SSLRKL--- 2009

Query: 206  TALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265
                 GL+ +R+                    P  + S    C+    L  G+  H    
Sbjct: 2010 -----GLIPTRSSF------------------PCTIKS----CSALCDLVSGRMSHQQAF 2042

Query: 266  ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA 325
              G+E+ LF+S+A++DMY+KC  +  A+ +F  +  ++VVSWTS+I G  Q+ QA+  L 
Sbjct: 2043 VFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALL 2102

Query: 326  LYDEMVSA--------GVKPNEVTFVGLIYACSHVGLVGKG-RKLFKSMIEDYGITPSLQ 376
            L+ + +           V  + V  V ++ ACS V   GKG  +     +   G   S+ 
Sbjct: 2103 LFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVS--GKGITEGVHGFVVKKGFDGSIG 2160

Query: 377  HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
                L+D  ++ G    ++ +   M  E D+ +W ++++
Sbjct: 2161 VGNTLMDAYAKCGQPLVSKKVFDWME-EKDDISWNSMIA 2198



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 86/192 (44%), Gaps = 10/192 (5%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L  CA        K +H Q+IK+ L     +  ++ID Y KC  V+ A    + M +++ 
Sbjct: 2233 LLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNV 2292

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
             SW +++  Y      ++ + IF  M+    ++P++  F S++ AC   G    G     
Sbjct: 2293 KSWTAMVAGYGMHGRAKEALDIFYKMVRAG-VKPNYITFVSVLAACSHAGLVEEGWHWFN 2351

Query: 126  QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARS 184
             +   + + P  +       +VD++ + G  N A  +   +K+K + V W ++L A  R 
Sbjct: 2352 AMKHKYDIEPGIEH---YGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGA-CRI 2407

Query: 185  GRKKDAMEIFEQ 196
             +  D  EI  Q
Sbjct: 2408 HKNVDLGEIAAQ 2419


>gi|115443695|ref|NP_001045627.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|50252103|dbj|BAD28089.1| putative pentatricopeptide (PPR) repeat-containing protein-like
           protein [Oryza sativa Japonica Group]
 gi|113535158|dbj|BAF07541.1| Os02g0106300 [Oryza sativa Japonica Group]
 gi|215766741|dbj|BAG98969.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 751

 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 236/618 (38%), Positives = 346/618 (55%), Gaps = 64/618 (10%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGK-------------------------------CD 52
           ++H Q+++LG   Y  + + L+D Y K                               C 
Sbjct: 167 SVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCK 226

Query: 53  LVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLV 112
           +++ A  L + M  RD ++W +++T   Q  L  + + +F  M A + +  D + F S++
Sbjct: 227 MIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRA-EGVGIDQYTFGSIL 285

Query: 113 KACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSV 172
            ACG+L A   GKQ+HA    + + D+  V S+LVDMY+KC     A AVF  +  +N +
Sbjct: 286 TACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNII 345

Query: 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
           SWTAM+  Y ++   ++A+  F                                EM+ +G
Sbjct: 346 SWTAMIVGYGQNACSEEAVRAFS-------------------------------EMQMDG 374

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
           +   D   L S++ +CAN A LE G Q H L +  G    + +SNA+V +Y KC  I  A
Sbjct: 375 IK-PDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDA 433

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
             +F  M   D VSWT+++ G AQ G+A+ET+ L+++M++ G+KP+ VTF+G++ ACS  
Sbjct: 434 HRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRA 493

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           GLV KG   F SM +D+GI P   HYTC++DL SRSG   EAE  IK MP  PD   WA 
Sbjct: 494 GLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWAT 553

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
           LLS+C+   N E+G   A +LL   P++P+SY+LL +++A+   W  V+ +R+ M   +V
Sbjct: 554 LLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQV 613

Query: 473 KKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQ 532
           KKEPG S+I++    HIF A + SHP    I+E L  L+++M   GY PD SSVLHD+  
Sbjct: 614 KKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVAD 673

Query: 533 KEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRD 592
            +K   +  HSE+LA+A+GL+       +R+VKNLRVC DCH   K IS+IT R+I+VRD
Sbjct: 674 ADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFISKITGRDILVRD 733

Query: 593 ATRYHHFKDGKCSCNDFW 610
           A R+H F DG CSC DFW
Sbjct: 734 AVRFHKFSDGTCSCGDFW 751



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 199/375 (53%), Gaps = 3/375 (0%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+ A     LV     L   MP+RD VS+ +++T ++    P +++ ++  +L  + +
Sbjct: 83  NALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESV 142

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +P     ++++    +L    LG  VH   +   F     V S LVDMYAK GL  +AR 
Sbjct: 143 RPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARR 202

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF  ++ K  V +  +++   R    +DA  +F+    R+   WT +V+GL Q+  +++A
Sbjct: 203 VFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEA 262

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  MR EGV I D     SI+ AC   A LE GKQIH  +    YE  +F+ +A+VD
Sbjct: 263 LDVFRRMRAEGVGI-DQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVD 321

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY+KC  I  A+ +F RM  ++++SWT++IVG  Q+  +EE +  + EM   G+KP++ T
Sbjct: 322 MYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFT 381

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
              +I +C+++  + +G + F  +    G+   +     L+ L  + G +++A  L   M
Sbjct: 382 LGSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEM 440

Query: 402 PFEPDEPTWAALLSA 416
            F  D+ +W AL++ 
Sbjct: 441 SFH-DQVSWTALVTG 454



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 140/307 (45%), Gaps = 47/307 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HA I +        + + L+D Y KC  ++ A  +   M  R+ +SW +++  Y Q 
Sbjct: 298 KQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQN 357

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ +  FS M  +D ++PD F   S++ +C +L +   G Q H   ++S       V
Sbjct: 358 ACSEEAVRAFSEM-QMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITV 416

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LV +Y KCG   +A  +FD +   + VSWTA+++ YA+ G+ K+ +++FE+      
Sbjct: 417 SNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEK------ 470

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG----- 257
                L +GL                + +GV  +       ++ AC+   ++E G     
Sbjct: 471 ----MLANGL----------------KPDGVTFI------GVLSACSRAGLVEKGCDYFD 504

Query: 258 --KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGT 314
             ++ HG+V    + +C+      +D+Y++      A++   +M    D   W +++   
Sbjct: 505 SMQKDHGIVPIDDHYTCM------IDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSC 558

Query: 315 AQHGQAE 321
              G  E
Sbjct: 559 RLRGNME 565



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 161/373 (43%), Gaps = 48/373 (12%)

Query: 109 ASLVKACGSLGAT--RLGKQVHACFVLSPFCD--DDVVKSSLVDMYAKCGLPNNARAVFD 164
           A L  A G  G T  R+   VH C +L  F       + + L+  YAK G    AR VFD
Sbjct: 14  AILSSAAGDGGRTGVRVAGAVH-CLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFD 72

Query: 165 SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS 224
            +   N  +  A+LSA A S    D   +F   P R+   + AL++G   + +   +   
Sbjct: 73  EMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQL 132

Query: 225 FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284
           +  + RE       + LS+++   +  +   LG  +H  V+ LG+ +  F+ + +VDMYA
Sbjct: 133 YRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYA 192

Query: 285 K-------------------------------CSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           K                               C  I  AK +F  M  +D ++WT+++ G
Sbjct: 193 KMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTG 252

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF----KSMIEDY 369
             Q+G   E L ++  M + GV  ++ TF  ++ AC  +  + +G+++     ++  ED 
Sbjct: 253 LTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDN 312

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
               S      L+D+ S+   +  AE + + M    +  +W A++     +  +E   R 
Sbjct: 313 VFVGS-----ALVDMYSKCRSIRLAEAVFRRMTCR-NIISWTAMIVGYGQNACSEEAVRA 366

Query: 430 ANHLL--SLKPED 440
            + +    +KP+D
Sbjct: 367 FSEMQMDGIKPDD 379


>gi|413947530|gb|AFW80179.1| hypothetical protein ZEAMMB73_142662 [Zea mays]
          Length = 649

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 234/602 (38%), Positives = 353/602 (58%), Gaps = 3/602 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+  AR   A  V+ +HA ++K G+ +   +  +L+ AY        A  LL E  +   
Sbjct: 50  LKAVARGSSAAPVRAVHAHVVKFGMGRNAHVATSLVTAYAAGGDGAAARALLSERERDTP 109

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG-SLGATRLGKQVH 128
           V W ++++ +N+     +    F  M A     P    + S++ ACG   G   LG QVH
Sbjct: 110 VVWNALISGHNRCRRFGEACCSFVDM-ARAGAAPTPVTYVSVLSACGKGTGDVLLGMQVH 168

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              V S    D  V+++LVDMYA+C    +A  +FD +++++ VSWT++LS   R GR  
Sbjct: 169 GRVVGSGVLPDLRVENALVDMYAECADMESAWKLFDGMQVRSVVSWTSLLSGLTRLGRVD 228

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A ++F + P R+   WTA++ G VQ+    +A   F EM+   V   D   + S++ AC
Sbjct: 229 EARDLFGRMPERDTVSWTAMIDGYVQAARFREALEMFREMQCSNVS-ADEFTMVSVITAC 287

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A    LE+G+ +   +   G +   F+ NA++DMY+KC  I  A D+F  M  +D  +WT
Sbjct: 288 AQLGALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKDMHHRDKFTWT 347

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           +II+G A +G  EE + ++  M+     P+EVTF+G++ AC+H GLV KGR+ F SM E 
Sbjct: 348 AIILGLAVNGYGEEAIEMFHRMIGVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMRET 407

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           Y I P++ HY C++DL  R+G + EA + I  MP  P+   W  LL+AC+ H N+E+G  
Sbjct: 408 YNIAPNVVHYGCIIDLFGRAGKITEALDAIDQMPMTPNSTIWGTLLAACRVHGNSEIGEL 467

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
           V   LL + PE+ + Y LLSN+YA    W+ V ++R  +    +KKEPG S IE     H
Sbjct: 468 VTERLLQMDPENSTVYTLLSNIYAKCNRWEDVRRLRHTIMEKGIKKEPGCSLIEMNGIIH 527

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F AG+ SHP+  EI+  L  +  ++   GY PD + V  ++ ++EK++ LFWHSE+LA+
Sbjct: 528 EFVAGDQSHPMSKEIYCKLESIINDLNNVGYFPDVTEVFVEVAEEEKQKVLFWHSEKLAI 587

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+ LL S P TV+R+VKNLR+C DCH  +K+ISR+  RE+VVRD TR+HHF+ G CSC D
Sbjct: 588 AFALLSSEPNTVIRIVKNLRMCLDCHNAIKLISRLYGREVVVRDRTRFHHFRHGFCSCKD 647

Query: 609 FW 610
           +W
Sbjct: 648 YW 649


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/596 (38%), Positives = 355/596 (59%), Gaps = 9/596 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           +K +HA +++LGL +   L N ++          Y+H +  +  + +   + +++     
Sbjct: 26  LKHVHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVL 85

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
            +  Q++I I+ +M   + L PD F F  L+KAC  L  ++LG ++H   V +    D  
Sbjct: 86  NDSFQESIEIYHSMRK-EGLSPDSFTFPFLLKACARLLDSKLGIKLHGLVVKAGCESDAF 144

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV-- 199
           V +SLV +Y KCG  +NA  VFD I  KN  +WTA++S Y   G+ ++A+++F +A    
Sbjct: 145 VNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSVF 204

Query: 200 -----RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
                +++  W++++ G   +    +A   F +M  EG    D   +  ++ ACA    L
Sbjct: 205 DGMLEKDIVSWSSMIQGYASNGLPKEALDLFFKMLNEGFR-PDCYAMVGVLCACARLGAL 263

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
           ELG     L+    +     +  A++DMYAKC  + +A ++F  MR+KD+V W + I G 
Sbjct: 264 ELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISGL 323

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
           A  G  +    L+ +M  +G++P+  TFVGL+ AC+H GLV +GR+ F SM   + +TP 
Sbjct: 324 AMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTPE 383

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           ++HY C++DLL R+G LDEA  L+K+MP E +   W ALL  C+ HR+T++   V   L+
Sbjct: 384 IEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQLI 443

Query: 435 SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGE 494
           +L+P +  +Y+LLSN+Y+++  W+  +K+R +MS   +KK PGYS+IE     H F  G+
Sbjct: 444 ALEPSNSGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWIEVDGVVHEFLVGD 503

Query: 495 TSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLK 554
           TSHPL ++I+  L EL  ++K  GYVP T  VL D+E++EKE  +  HSE+LA+A+GL+ 
Sbjct: 504 TSHPLSEKIYAKLGELVKDLKASGYVPTTDYVLFDIEEEEKEHFIGCHSEKLAIAFGLIS 563

Query: 555 SVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + P   +RVVKNLRVCGDCH  +K ISR T REI+VRD  R+H F DG CSC D+W
Sbjct: 564 TAPNDKIRVVKNLRVCGDCHEAIKHISRFTGREIIVRDNNRFHCFNDGSCSCKDYW 619


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1005

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/588 (39%), Positives = 340/588 (57%), Gaps = 33/588 (5%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            +++HA + K G      + N L+  Y K   VQ    + E    RD +SW ++L+ ++  
Sbjct: 451  ESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDN 510

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                  + IF+ MLA +   P+ + F S++++C SL    LGKQVHA  V +    +D V
Sbjct: 511  ETCDTGLRIFNQMLA-EGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFV 569

Query: 143  KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
             ++LVDMYA                 KN                 +DA  IF +   R+L
Sbjct: 570  GTALVDMYA-----------------KNRF--------------LEDAETIFNRLIKRDL 598

Query: 203  FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
            F WT +V+G  Q      A   FI+M+REGV   +   L+S +  C+  A L+ G+Q+H 
Sbjct: 599  FAWTVIVAGYAQDGQGEKAVKCFIQMQREGVK-PNEFTLASSLSGCSRIATLDSGRQLHS 657

Query: 263  LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            + I  G    +F+++A+VDMYAKC  +  A+ +F  +  +D VSW +II G +QHGQ  +
Sbjct: 658  MAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGK 717

Query: 323  TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
             L  ++ M+  G  P+EVTF+G++ ACSH+GL+ +G+K F S+ + YGITP+++HY C++
Sbjct: 718  ALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMV 777

Query: 383  DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
            D+L R+G   E E+ I+ M    +   W  +L ACK H N E G R A  L  L+PE  S
Sbjct: 778  DILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDS 837

Query: 443  SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            +YILLSN++A+  MW  V+ VR LMS   VKKEPG S++E     H+F + + SHP   E
Sbjct: 838  NYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWVEVNGQVHVFLSHDGSHPKIRE 897

Query: 503  IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
            I   L +L  ++   GY P+T  VLH++  +EK+  LF+HSERLA+A+ LL +     +R
Sbjct: 898  IHLKLQDLHQKLMSVGYTPNTDHVLHNVSDREKQELLFYHSERLALAFALLSTSTRKTIR 957

Query: 563  VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            + KNLR+CGDCH  MK IS IT +E+VVRD   +HHFK+G CSC +FW
Sbjct: 958  IFKNLRICGDCHDFMKSISEITNQELVVRDINCFHHFKNGSCSCQNFW 1005



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 125/447 (27%), Positives = 202/447 (45%), Gaps = 36/447 (8%)

Query: 2   QISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
           ++  Y   LR CA        K +H Q+IK G++    L N+L++ Y KC    YA  + 
Sbjct: 127 RLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVF 186

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
            E+P+RD VSW +++T +         +++F  M   + ++ + F +A+ +KAC      
Sbjct: 187 GEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRR-EGVEANEFTYATALKACSMCLDL 245

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
             GKQVHA  +      D  V S+LVD+YAKC                            
Sbjct: 246 EFGKQVHAEAIKVGDFSDLFVGSALVDLYAKC---------------------------- 277

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
              G    A  +F   P +N   W AL++G  Q  +       F  M    ++      L
Sbjct: 278 ---GEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTGSEINF-SKFTL 333

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           S+++  CAN   L  G+ +H L I +G E   FIS  +VDMY+KC     A  +F R+  
Sbjct: 334 STVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRIED 393

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
            DVVSW++II    Q GQ+ E   ++  M  +GV PN+ T   L+ A + +G +  G  +
Sbjct: 394 PDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAATDLGDLYYGESI 453

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
              + + YG          L+ +  + G + +   + +A     D  +W ALLS    + 
Sbjct: 454 HACVCK-YGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATT-NRDLISWNALLSGFHDNE 511

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLS 448
             + G R+ N +L+ +  +P+ Y  +S
Sbjct: 512 TCDTGLRIFNQMLA-EGFNPNMYTFIS 537



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/431 (23%), Positives = 204/431 (47%), Gaps = 42/431 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HA+ IK+G      + + L+D Y KC  +  A  +   MP+++ VSW ++L  + Q 
Sbjct: 249 KQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQM 308

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD-DDV 141
              +K +++F  M    ++    F  ++++K C + G  R G+ VH+   +   C+ D+ 
Sbjct: 309 GDAEKVLNLFCRMTG-SEINFSKFTLSTVLKGCANSGNLRAGQIVHS-LAIRIGCELDEF 366

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           +   LVDMY+KCGL                                 DA+++F +    +
Sbjct: 367 ISCCLVDMYSKCGLAG-------------------------------DALKVFVRIEDPD 395

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           +  W+A+++ L Q     +A   F  MR  GV I +   L+S+V A  +   L  G+ IH
Sbjct: 396 VVSWSAIITCLDQKGQSREAAEVFKRMRHSGV-IPNQFTLASLVSAATDLGDLYYGESIH 454

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             V   G+E    + NA+V MY K   +     +F     +D++SW +++ G   +   +
Sbjct: 455 ACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCD 514

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
             L ++++M++ G  PN  TF+ ++ +CS +  V  G+++   ++++  +  +    T L
Sbjct: 515 TGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKN-SLDGNDFVGTAL 573

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE-- 439
           +D+ +++  L++AE +   +  + D   W  +++    +     G +     + ++ E  
Sbjct: 574 VDMYAKNRFLEDAETIFNRL-IKRDLFAWTVIVAG---YAQDGQGEKAVKCFIQMQREGV 629

Query: 440 DPSSYILLSNV 450
            P+ + L S++
Sbjct: 630 KPNEFTLASSL 640



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/324 (23%), Positives = 140/324 (43%), Gaps = 47/324 (14%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  LR C+        K +HAQI+K  L     +   L+D Y K   ++ A  +   + 
Sbjct: 535 FISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLI 594

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +RD  +W  I+  Y Q    +K +  F  M   + ++P+ F  AS +  C  +     G+
Sbjct: 595 KRDLFAWTVIVAGYAQDGQGEKAVKCFIQM-QREGVKPNEFTLASSLSGCSRIATLDSGR 653

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q+H+  + +    D  V S+LVDMYAKCG   +A  VFD +  +++VSW  ++  Y++ G
Sbjct: 654 QLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHG 713

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
           +   A++ FE                                M  EG  + D +    ++
Sbjct: 714 QGGKALKAFEA-------------------------------MLDEGT-VPDEVTFIGVL 741

Query: 246 GACANFAVLELGK-------QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
            AC++  ++E GK       +I+G+   + + +C+      VD+  +       +     
Sbjct: 742 SACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACM------VDILGRAGKFHEVESFIEE 795

Query: 299 MR-RKDVVSWTSIIVGTAQHGQAE 321
           M+   +V+ W +++     HG  E
Sbjct: 796 MKLTSNVLIWETVLGACKMHGNIE 819



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 51/198 (25%), Positives = 90/198 (45%), Gaps = 13/198 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C+R     + + LH+  IK G      + + L+D Y KC  V+ A  + + +  RD 
Sbjct: 640 LSGCSRIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDT 699

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ--- 126
           VSW +I+  Y+Q     K +  F  ML  +   PD   F  ++ AC  +G    GK+   
Sbjct: 700 VSWNTIICGYSQHGQGGKALKAFEAMLD-EGTVPDEVTFIGVLSACSHMGLIEEGKKHFN 758

Query: 127 -VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARS 184
            +   + ++P  +     + +VD+  + G  +   +  + +KL  N + W  +L A    
Sbjct: 759 SLSKIYGITPTIEH---YACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMH 815

Query: 185 GR----KKDAMEIFEQAP 198
           G     ++ AM++FE  P
Sbjct: 816 GNIEFGERAAMKLFELEP 833


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/569 (40%), Positives = 336/569 (59%), Gaps = 33/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT+I    +C +V+ A  L E M  RD ++W +++T + Q  L  + ++ F  M     +
Sbjct: 210 NTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRM-RFQGI 268

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             D + F S++ ACG+L A   GKQ+HA  + + + D+  V S+LVDMY+KC      R+
Sbjct: 269 AIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKC------RS 322

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +                         K A   F +   +N+  WTAL+ G  Q+    +A
Sbjct: 323 I-------------------------KPAETAFRRMSCKNIISWTALIVGYGQNGCSEEA 357

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F EM+R+G+D  D   L S++ +CAN A LE G Q H L +  G    + +SNA+V 
Sbjct: 358 VRVFSEMQRDGID-PDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITVSNALVT 416

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           +Y KC  I  A  +F  M   D VSWT+++ G AQ G+A+ET+ L+++M++  VKP+ VT
Sbjct: 417 LYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVT 476

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+G++ ACS  G V KG   F SM +D+GI P   HYTC++DL SRSG L EAE  IK M
Sbjct: 477 FIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGRLKEAEEFIKQM 536

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P  PD   W  LLSAC+   + E+G   A +LL + P++P+SY+LL +++A+   W  V+
Sbjct: 537 PMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLEIDPQNPASYVLLCSMHATKGNWNQVA 596

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           ++R+ M   +VKKEPG S+I++    HIF A + SHP    I+E L  L+++M   GY P
Sbjct: 597 QLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSKGIYEKLEWLNSKMLEEGYKP 656

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           D SSVLHD+   +K   +  HSE+LA+A+GL+       +R+VKNLRVC DCH   K+IS
Sbjct: 657 DVSSVLHDVADTDKVHMVSHHSEKLAIAFGLMFVPHEMPIRIVKNLRVCVDCHNATKLIS 716

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +IT R+I+VRDA R+H F +G CSC DFW
Sbjct: 717 KITGRDILVRDAVRFHKFSNGVCSCGDFW 745



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 196/380 (51%), Gaps = 12/380 (3%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTML-ALDK 100
           N L+       L+     L   M QRD VS+ +++  ++      + + ++ T+L A   
Sbjct: 76  NALLSTLAHARLLDDMDSLFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSS 135

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           ++P     +++V A  +LG   LG+Q H   +   F  +  V S LV MYAK GL  +A+
Sbjct: 136 VRPSRITMSAMVMAASALGDRALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAK 195

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            VFD +  KN V +  M++   R    ++A  +FE    R+   WT +V+G  Q+  E  
Sbjct: 196 RVFDEMDGKNVVMYNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQ 255

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
           A   F  MR +G+ I D     SI+ AC   + LE GKQIH  +I   Y+  +F+ +A+V
Sbjct: 256 ALNFFRRMRFQGIAI-DQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALV 314

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           DMY+KC  I  A+  F RM  K+++SWT++IVG  Q+G +EE + ++ EM   G+ P++ 
Sbjct: 315 DMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDF 374

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY----TCLLDLLSRSGHLDEAEN 396
           T   +I +C+++  + +G     +      +   L HY      L+ L  + G +++A  
Sbjct: 375 TLGSVISSCANLASLEEG-----AQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHR 429

Query: 397 LIKAMPFEPDEPTWAALLSA 416
           L   M F  D+ +W AL++ 
Sbjct: 430 LFDEMLFH-DQVSWTALVTG 448



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 139/307 (45%), Gaps = 47/307 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HA II+        + + L+D Y KC  ++ A      M  ++ +SW +++  Y Q 
Sbjct: 292 KQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCKNIISWTALIVGYGQN 351

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ + +FS M   D + PD F   S++ +C +L +   G Q H   ++S       V
Sbjct: 352 GCSEEAVRVFSEM-QRDGIDPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMHYITV 410

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LV +Y KCG   +A  +FD +   + VSWTA+++ YA+ GR K+ +++FE+   +++
Sbjct: 411 SNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQFGRAKETIDLFEKMLAKDV 470

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG----- 257
                                     + +GV  +       ++ AC+    +E G     
Sbjct: 471 --------------------------KPDGVTFI------GVLSACSRAGFVEKGCSYFH 498

Query: 258 --KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGT 314
             ++ HG+V    + +C+      +D+Y++   +  A++   +M    D + W +++   
Sbjct: 499 SMQKDHGIVPIDDHYTCM------IDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSAC 552

Query: 315 AQHGQAE 321
              G  E
Sbjct: 553 RLRGDME 559



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 146/343 (42%), Gaps = 35/343 (10%)

Query: 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLW 205
           L+  Y K G    AR VFD+    N  ++ A+LS  A +    D   +F     R+   +
Sbjct: 47  LLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRDTVSY 106

Query: 206 TALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLSSIVGACANFAVLELGKQIHGLV 264
            A+++G         A   +  + R G  +    + +S++V A +      LG+Q H  +
Sbjct: 107 NAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQFHCQI 166

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM------------------------R 300
           + LG+    F+ + +V MYAK   I  AK +F  M                        R
Sbjct: 167 LRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMVEEAR 226

Query: 301 R-------KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
           R       +D ++WT+++ G  Q+G   + L  +  M   G+  ++ TF  ++ AC  + 
Sbjct: 227 RLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTACGALS 286

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
            + +G+++   +I  +    ++   + L+D+ S+   +  AE   + M  + +  +W AL
Sbjct: 287 ALEQGKQIHAYIIRTH-YDDNVFVGSALVDMYSKCRSIKPAETAFRRMSCK-NIISWTAL 344

Query: 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           +     +  +E   RV +  +     DP  + L S + + A +
Sbjct: 345 IVGYGQNGCSEEAVRVFSE-MQRDGIDPDDFTLGSVISSCANL 386


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  452 bits (1164), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/602 (36%), Positives = 355/602 (58%), Gaps = 35/602 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA        + LH+ +IK+  H        L+D Y KC+++  A    + MP++D 
Sbjct: 291 LKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDI 350

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           ++W ++++ Y+Q       +S+FS M + D +  +    ++++K+  SL A ++ KQ+H 
Sbjct: 351 IAWNALISGYSQCGDHLDAVSLFSKMFSED-IDFNQTTLSTVLKSVASLQAIKVCKQIHT 409

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + S    D  V +SL+D Y KC   + A  +F+    ++ V++T+M++AY++ G  ++
Sbjct: 410 ISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEE 469

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-DPLVLSSIVGAC 248
           A++++                                 ++ +  DI  DP + SS++ AC
Sbjct: 470 ALKLY---------------------------------LQMQDADIKPDPFICSSLLNAC 496

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           AN +  E GKQ+H   I  G+   +F SN++V+MYAKC  I  A   F  +  + +VSW+
Sbjct: 497 ANLSAYEQGKQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWS 556

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++I G AQHG  +E L L+++M+  GV PN +T V ++ AC+H GLV +G++ F+ M   
Sbjct: 557 AMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVM 616

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           +GI P+ +HY C++DLL RSG L+EA  L+ ++PFE D   W ALL A + H+N E+G +
Sbjct: 617 FGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQK 676

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            A  L  L+PE   +++LL+N+YASA MW++V+KVRK M   +VKKEPG S+IE     +
Sbjct: 677 AAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRKFMKDSKVKKEPGMSWIEIKDKVY 736

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F  G+ SH   DEI+  L +L   + + GY       +H++++ EKE+ L+ HSE+LAV
Sbjct: 737 TFIVGDRSHSRSDEIYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAV 796

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+GL+ + PG  +RV KNLR+C DCH   K + +I  REI+VRD  R+HHFKDG CSC D
Sbjct: 797 AFGLIATPPGGPIRVKKNLRICVDCHTFFKFVCKIVSREIIVRDINRFHHFKDGSCSCGD 856

Query: 609 FW 610
           +W
Sbjct: 857 YW 858



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 131/399 (32%), Positives = 199/399 (49%), Gaps = 38/399 (9%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LHA +IK G  +   L N L+  Y KC    YA  L++E  + D VSW+S+L+ Y Q   
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            ++ + +F+ M  L  ++ + F F S++KAC       +G++VH   V++ F  D  V +
Sbjct: 63  VEEALLVFNEMCLLG-VKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVAN 121

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +LV MYAKCGL +++R +F  I                                 RN+  
Sbjct: 122 TLVVMYAKCGLLDDSRRLFGGI-------------------------------VERNVVS 150

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W AL S  VQS    +A   F EM R G+ + +   +S I+ ACA     +LG++IHGL+
Sbjct: 151 WNALFSCYVQSELCGEAVGLFKEMVRSGI-MPNEFSISIILNACAGLQEGDLGRKIHGLM 209

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           + +G +   F +NA+VDMY+K  +I  A  +F  +   DVVSW +II G   H   +  L
Sbjct: 210 LKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLAL 269

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            L DEM  +G +PN  T    + AC+ +G    GR+L  S+I+       L     L+D+
Sbjct: 270 MLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIK-MDAHSDLFAAVGLVDM 328

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSA---CKHH 420
            S+   +D+A     +MP + D   W AL+S    C  H
Sbjct: 329 YSKCEMMDDARRAYDSMP-KKDIIAWNALISGYSQCGDH 366



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 116/463 (25%), Positives = 220/463 (47%), Gaps = 37/463 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA  Q     + +H  ++K+GL       N L+D Y K   ++ A  + +++   D 
Sbjct: 190 LNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDV 249

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +I+      +     + +   M      +P+ F  +S +KAC ++G   LG+Q+H+
Sbjct: 250 VSWNAIIAGCVLHDCNDLALMLLDEMKG-SGTRPNMFTLSSALKACAAMGFKELGRQLHS 308

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +      D      LVDMY+KC + ++AR  +DS+                       
Sbjct: 309 SLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSM----------------------- 345

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
                   P +++  W AL+SG  Q  + +DA   F +M  E +D  +   LS+++ + A
Sbjct: 346 --------PKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDF-NQTTLSTVLKSVA 396

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +   +++ KQIH + I  G  S  ++ N+++D Y KC+ I  A  IF     +D+V++TS
Sbjct: 397 SLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTS 456

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I   +Q+G  EE L LY +M  A +KP+      L+ AC+++    +G++L    I+ +
Sbjct: 457 MITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIK-F 515

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G    +     L+++ ++ G +++A+     +P      +W+A++     H + +   R+
Sbjct: 516 GFMCDIFASNSLVNMYAKCGSIEDADRAFSEIP-NRGIVSWSAMIGGYAQHGHGKEALRL 574

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
            N +  L+   P ++I L +V  +      V++ ++    MEV
Sbjct: 575 FNQM--LRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEV 615



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 109/449 (24%), Positives = 202/449 (44%), Gaps = 40/449 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+  +     + +H   +  G    G + NTL+  Y KC L+  +  L   + +R+ 
Sbjct: 89  LKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNV 148

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW ++ + Y Q+ L  + + +F  M+    + P+ F  + ++ AC  L    LG+++H 
Sbjct: 149 VSWNALFSCYVQSELCGEAVGLFKEMVR-SGIMPNEFSISIILNACAGLQEGDLGRKIHG 207

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +      D    ++LVDMY+K G    A AVF  I   + VS                
Sbjct: 208 LMLKMGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVS---------------- 251

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
                          W A+++G V       A     EM+  G    +   LSS + ACA
Sbjct: 252 ---------------WNAIIAGCVLHDCNDLALMLLDEMKGSGTR-PNMFTLSSALKACA 295

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
                ELG+Q+H  +I +   S LF +  +VDMY+KC  +  A+  +  M +KD+++W +
Sbjct: 296 AMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNA 355

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G +Q G   + ++L+ +M S  +  N+ T   ++ + + +  +   +++    I+  
Sbjct: 356 LISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKS- 414

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI         LLD   +  H+DEA  + +   +E D   + ++++A   + + E   ++
Sbjct: 415 GIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWE-DLVAYTSMITAYSQYGDGEEALKL 473

Query: 430 ANHLLSLKPED--PSSYILLSNVYASAAM 456
               L ++  D  P  +I  S + A A +
Sbjct: 474 ---YLQMQDADIKPDPFICSSLLNACANL 499



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 160/331 (48%), Gaps = 35/331 (10%)

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++HA  +   F  D  +++ LV +Y+KC     AR + D     + VSW+++LS Y ++G
Sbjct: 2   ELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNG 61

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             ++A+ +F                                EM   GV   +     S++
Sbjct: 62  FVEEALLVFN-------------------------------EMCLLGVK-CNEFTFPSVL 89

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            AC+    L +G+++HG+ +  G+ES  F++N +V MYAKC  +  ++ +FG +  ++VV
Sbjct: 90  KACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVV 149

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SW ++     Q     E + L+ EMV +G+ PNE +   ++ AC+ +     GRK+   M
Sbjct: 150 SWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEGDLGRKIHGLM 209

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
           ++  G+         L+D+ S++G ++ A  + + +   PD  +W A+++ C  H   ++
Sbjct: 210 LK-MGLDLDQFSANALVDMYSKAGEIEGAVAVFQDIA-HPDVVSWNAIIAGCVLHDCNDL 267

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
              + + +       P+ + L S + A AAM
Sbjct: 268 ALMLLDEMKG-SGTRPNMFTLSSALKACAAM 297


>gi|449520333|ref|XP_004167188.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  452 bits (1163), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/628 (36%), Positives = 353/628 (56%), Gaps = 40/628 (6%)

Query: 21  TVKTLHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           T+  LH++I+     +  P L   L+ AY        A ++ +   +++ V +  ++ +Y
Sbjct: 53  TLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSY 112

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
              NL  + +SIF  ML+     PDH+ F  ++KAC  L   R+G QVH   V      +
Sbjct: 113 VNNNLYVEALSIFQVMLSC-AFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTN 171

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI------ 193
             + ++LV MY KCG    AR V D +  ++ VSW +M++ YA+SG+  DA+EI      
Sbjct: 172 LFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDS 231

Query: 194 -------------------------------FEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
                                          FE+   +NL  W  +++  V +    +A 
Sbjct: 232 LNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAV 291

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
             F++M   G+   D + ++S++ AC + + L LG+++H  +     +  L + NA++DM
Sbjct: 292 SLFLQMEECGMK-PDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLQPNLLLENALLDM 350

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           YAKC  +  A+D+F +MR +DVVSWTS++    + GQ  + +AL+ +M+ +G  P+ + F
Sbjct: 351 YAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAF 410

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
           V ++ ACSH GL+ +GR  F+ M E YGI P ++H+ C++DL  R+G ++EA + IK MP
Sbjct: 411 VSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMP 470

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462
            EP+E  W ALLSAC+ H   ++G   A+ L  L P+    Y+LLSN+YA A MW+ V  
Sbjct: 471 MEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMN 530

Query: 463 VRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPD 522
           VR  M  + +KK PG S +E     H F AG+  HP    I+  L  L  +MK  GY+P 
Sbjct: 531 VRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQ 590

Query: 523 TSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISR 582
           T S LHD+E ++KE  L  HSE+LA+ + +L +  GT +R+ KNLRVCGDCHI +K+IS+
Sbjct: 591 TESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISK 650

Query: 583 ITKREIVVRDATRYHHFKDGKCSCNDFW 610
           I  R I+VRD  R+HHF +G CSC D+W
Sbjct: 651 IVSRNIIVRDCNRFHHFSNGICSCGDYW 678


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 215/569 (37%), Positives = 343/569 (60%), Gaps = 32/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +I  Y K    + A +L ++MP RD+ SW +I++   Q N P++ + ++  M   D  
Sbjct: 188 NIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYS 247

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           + +    +S + A  ++ +  +GK++H   +      D+VV  SL+DMY KCG    AR 
Sbjct: 248 KSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARY 307

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +FD ++ ++ VSWT M+  Y ++GR+++   +F      N+                   
Sbjct: 308 IFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNI------------------- 348

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
                        + +    + ++ ACA+ A  +LGKQIH  ++ +G++S    ++A+V 
Sbjct: 349 -------------MPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVH 395

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY+KC DI  AK +F  + + D+ SWTS++VG AQHGQ ++ L  ++ ++ +G KP+ + 
Sbjct: 396 MYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIA 455

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+G++ AC+H GLV KG + F S+ E +G+T ++ HY C++DLL+R+G   EAE++I  M
Sbjct: 456 FIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEM 515

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P +PD+  WAALL  C+ H N E+  R A  L  ++PE+P++Y+ L+N+YASA M    +
Sbjct: 516 PIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASAGMRAEEA 575

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
            +R+ M    + K+PG S+IE  +  H+F  G+ SHP   EI E L+EL   MK  GYVP
Sbjct: 576 NIRETMDSRGIVKKPGMSWIEIRREVHVFSVGDNSHPKSKEILEYLSELSKRMKEVGYVP 635

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           DT+ VLHD+E ++KE  L +HSE+LAVA+G++ +  GT ++V KNLR C DCH  +K IS
Sbjct: 636 DTNFVLHDVELEQKEENLSYHSEKLAVAFGIISTPSGTPIKVFKNLRTCVDCHNAIKFIS 695

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
            IT R+I+VRD+ R+H F+ G CSC D+W
Sbjct: 696 NITGRKIIVRDSNRFHCFEGGSCSCKDYW 724



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/319 (30%), Positives = 176/319 (55%), Gaps = 3/319 (0%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +P   ++ +L+K C    A + GKQVHA  + +       + + L+DMYAKCG   +A  
Sbjct: 116 KPYASIYLTLLKFCLKQRALKEGKQVHA-HIKTSGSIGLYISNRLLDMYAKCGSLVDAEK 174

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VFD +  ++  SW  M+S Y + G  + A  +F++ P R+ F WTA++SG VQ     +A
Sbjct: 175 VFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEA 234

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              +  M++      +   +SS + A A    L +GK+IHG ++ +G +S   +  +++D
Sbjct: 235 LELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLD 294

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  I  A+ IF +M  +DVVSWT++I    ++G+ EE  AL+  ++++ + PN+ T
Sbjct: 295 MYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFT 354

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F G++ AC+ +     G+++   M+   G        + L+ + S+ G ++ A+++ + +
Sbjct: 355 FAGVLNACADLAAEDLGKQIHAYMVR-VGFDSFSSAASALVHMYSKCGDIENAKSVFEIL 413

Query: 402 PFEPDEPTWAALLSACKHH 420
           P +PD  +W +LL     H
Sbjct: 414 P-QPDLFSWTSLLVGYAQH 431



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 147/307 (47%), Gaps = 47/307 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  I+++GL     +  +L+D YGKC  ++ A ++ ++M +RD VSW +++  Y + 
Sbjct: 271 KKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKN 330

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++  ++F  ++    + P+ F FA ++ AC  L A  LGKQ+HA  V   F      
Sbjct: 331 GRREEGFALFRHLMN-SNIMPNDFTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSA 389

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            S+LV MY+KCG   NA++VF+ +   +  SWT++L  YA+ G+   A+  FE       
Sbjct: 390 ASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFEL------ 443

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG----- 257
                    L++S  + D   +FI                 ++ ACA+  +++ G     
Sbjct: 444 ---------LLKSGTKPDGI-AFI----------------GVLSACAHAGLVDKGLEYFH 477

Query: 258 --KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-DVVSWTSIIVGT 314
             K+ HGL   + + +C      I+D+ A+      A+ I   M  K D   W +++ G 
Sbjct: 478 SIKEKHGLTRTIDHYAC------IIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGC 531

Query: 315 AQHGQAE 321
             HG  E
Sbjct: 532 RIHGNLE 538



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 75/336 (22%), Positives = 137/336 (40%), Gaps = 46/336 (13%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K +HA ++++G   +    + L+  Y KC  ++ A  + E +PQ D 
Sbjct: 359 LNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDL 418

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----- 124
            SW S+L  Y Q     K +  F  +L     +PD   F  ++ AC   G    G     
Sbjct: 419 FSWTSLLVGYAQHGQHDKALHFFELLLK-SGTKPDGIAFIGVLSACAHAGLVDKGLEYFH 477

Query: 125 --KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAY 181
             K+ H    L+   D     + ++D+ A+ G    A ++ + + +K +   W A+L   
Sbjct: 478 SIKEKHG---LTRTIDH---YACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGC 531

Query: 182 ARSGR----KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD 237
              G     K+ A  +FE  P  N   +  L +            Y+   MR E  +I +
Sbjct: 532 RIHGNLELAKRAAKSLFEIEP-ENPATYVTLAN-----------IYASAGMRAEEANIRE 579

Query: 238 PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA-AKDIF 296
            +    IV      + +E+ +++H  V ++G  S           + K  +I+    ++ 
Sbjct: 580 TMDSRGIVKK-PGMSWIEIRREVH--VFSVGDNS-----------HPKSKEILEYLSELS 625

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
            RM+    V  T+ ++   +  Q EE L+ + E ++
Sbjct: 626 KRMKEVGYVPDTNFVLHDVELEQKEENLSYHSEKLA 661


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/601 (37%), Positives = 356/601 (59%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA   +    + LH+ +IK+ +     L   LID Y KC+ +  A  + + MP+RD 
Sbjct: 219 LKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDM 278

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           ++W ++++ ++Q    ++  S+F  M   + +  +    ++++K+  +L A  + +Q+HA
Sbjct: 279 IAWNAVISGHSQNEEDEEAASLFPLM-HTEGIGFNQTTLSTVLKSIAALQANYMCRQIHA 337

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + S F  D+ V +SL+D Y KCG                                 +D
Sbjct: 338 LSLKSGFEFDNYVVNSLIDTYGKCG-------------------------------HVED 366

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +FE++P+ +L L+T+LV+   Q     +A   ++EM+  G+   D  V SS++ ACA
Sbjct: 367 ATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIK-PDSFVCSSLLNACA 425

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           + +  E GKQ+H  ++  G+ S +F  N++V+MYAKC  I  A   F R+  + +VSW++
Sbjct: 426 SLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSA 485

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G AQHG  +E L L+ +M+  GV PN +T V ++ AC+H GLV + +  F SM   +
Sbjct: 486 MIGGLAQHGYGKEALQLFKQMLKVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILF 545

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI P  +HY C++DLL R+G L+ A  L+  MPF+ +   W ALL A + H+N ++G + 
Sbjct: 546 GIEPMQEHYACMIDLLGRAGKLEAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQA 605

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  LL+L+PE   +++LL+N+YAS  MW  V++VR+LM   +VKKEPG S++E     + 
Sbjct: 606 AEMLLALEPEKSGTHVLLANIYASVGMWDKVARVRRLMKDGKVKKEPGMSWLEVKDKVYT 665

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F  G+ SH    EI+  L EL   +K+ GYVP     LHD+E+ EKE+ L+ HSE+LAVA
Sbjct: 666 FIVGDRSHSRSTEIYAKLDELSDLLKKAGYVPMVEIDLHDVERSEKEQLLYHHSEKLAVA 725

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GL+ + PG  +RV KNLR+C DCH V+K IS+I  REI+VRD  R+HHF++G CSC ++
Sbjct: 726 FGLIATPPGAPIRVKKNLRICFDCHTVLKFISKIVSREIIVRDTNRFHHFREGSCSCGEY 785

Query: 610 W 610
           W
Sbjct: 786 W 786



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 156/521 (29%), Positives = 230/521 (44%), Gaps = 77/521 (14%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           ++ + F F S++KAC       LGKQVH   V++ F  D+ V +SLV +YAKCG   +AR
Sbjct: 6   IKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDAR 65

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
           ++FD+I  ++ VSW A+ S Y  S    +A+ +F             ++SG+    NE  
Sbjct: 66  SLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHD----------MVLSGI--RPNEFS 113

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
                               LSS++  C        G++IHG +I LGY+S  F +NA+V
Sbjct: 114 --------------------LSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALV 153

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           DMYAK   +  A  +F  + + D+VSW +II G   H      L L  EM  +G+ PN  
Sbjct: 154 DMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMF 213

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIE-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           T    + AC+ + L   GR+L  S+I+ D G    L     L+D+ S+   +D+A  + K
Sbjct: 214 TLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLG--VGLIDMYSKCNSMDDARLVFK 271

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY--ILLSNVYASAAMW 457
            MP E D   W A++S   H +N E     A  L  L   +   +    LS V  S A  
Sbjct: 272 LMP-ERDMIAWNAVISG--HSQNEE--DEEAASLFPLMHTEGIGFNQTTLSTVLKSIAAL 326

Query: 458 QHVSKVRK-----LMSVMEVKKEPGYSYIE-FGKGSHIFYAGET--SHPLKDEIF----- 504
           Q     R+     L S  E       S I+ +GK  H+  A       P+ D +      
Sbjct: 327 QANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLV 386

Query: 505 ---------ELLTELDAEMKRRGYVPDT---SSVLH---DMEQKEKERQLFWHSERLAVA 549
                    E    L  EM+ RG  PD+   SS+L+    +   E+ +Q+  H     + 
Sbjct: 387 TAYAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVH----ILK 442

Query: 550 YGLLKSV-PGTVLRVVKNLRVCGDCHIVMKMISRITKREIV 589
           +G +  +  G  L  V     CG         SRI  R IV
Sbjct: 443 FGFMSDIFAGNSL--VNMYAKCGSIEDASCAFSRIPVRGIV 481



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 114/486 (23%), Positives = 215/486 (44%), Gaps = 74/486 (15%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C   +  +  K +H  ++  G      + N+L+  Y KC     A  L + +P R  
Sbjct: 17  LKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAIPDRSV 76

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW ++ + Y  +++  + +S+F  M+ L  ++P+ F  +S++  C  L  +  G+++H 
Sbjct: 77  VSWNALFSCYVHSDMHGEAVSLFHDMV-LSGIRPNEFSLSSMINVCTGLEDSVQGRKIHG 135

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +   +  D    ++LVDMYAK                                G  +D
Sbjct: 136 YLIKLGYDSDAFSANALVDMYAKV-------------------------------GILED 164

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F++    ++  W A+++G V       A     EM + G+   +   LSS + ACA
Sbjct: 165 ASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGM-CPNMFTLSSALKACA 223

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
             A+ ELG+Q+H  +I +   S  F+   ++DMY+KC+ +  A+ +F  M  +D+++W +
Sbjct: 224 GMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNA 283

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI---------YACSHV-GLVGKGR 359
           +I G +Q+ + EE  +L+  M + G+  N+ T   ++         Y C  +  L  K  
Sbjct: 284 VISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSG 343

Query: 360 KLF-----KSMIEDYGITPSLQH---------------YTCLLDLLSRSGHLDEAENLIK 399
             F      S+I+ YG    ++                +T L+   ++ G  +EA  L  
Sbjct: 344 FEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYL 403

Query: 400 AMP---FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
            M     +PD    ++LL+AC      E G +V  H+L         +  +S+++A  ++
Sbjct: 404 EMQDRGIKPDSFVCSSLLNACASLSAYEQGKQVHVHIL--------KFGFMSDIFAGNSL 455

Query: 457 WQHVSK 462
               +K
Sbjct: 456 VNMYAK 461


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  452 bits (1162), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 233/602 (38%), Positives = 344/602 (57%), Gaps = 34/602 (5%)

Query: 10  LRVCARHQIALTV-KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           LR C+  + +  V + +H   +K G+     +   LID Y K   ++ A  L       D
Sbjct: 405 LRACSSLEESYCVGRQVHTCALKAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFD 464

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
             SW +++  +  ++  ++ + +FS M    + + D   FA+  KA G L   + GKQ+H
Sbjct: 465 LASWNAMMHGFTVSDNYREALRLFSLMHERGE-KADQITFANAAKAAGCLVRLQQGKQIH 523

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           A  +   F  D  V S ++DMY KCG                                 K
Sbjct: 524 AVVIKMRFHYDLFVISGILDMYLKCG-------------------------------EMK 552

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            A ++F Q P  +   WT ++SG V++  E  A +++ +MR  GV   D    +++V AC
Sbjct: 553 SARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQ-PDEYTFATLVKAC 611

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           +    LE GKQIH  ++ L      F+  ++VDMYAKC +I  A  +F RM  + V  W 
Sbjct: 612 SLLTALEQGKQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWN 671

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++IVG AQHG AEE L  ++EM S GV P+ VTF+G++ ACSH GL     K F SM + 
Sbjct: 672 AMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKT 731

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YG+ P ++HY+CL+D LSR+GH+ EAE ++ +MPFE     +  LL+AC+   + E G R
Sbjct: 732 YGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLNACRVQGDKETGER 791

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
           VA  L ++ P D ++Y+LLSN+YA+A  W++    R +M  + VKKEPG+S+I+     H
Sbjct: 792 VAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKEPGFSWIDMKNKVH 851

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
           +F AG+ SH   D I+  +  +   +K  GYVPDT   L D+E+++KE  L +HSE+LA+
Sbjct: 852 LFVAGDRSHEETDLIYNKVEYVMKRIKEEGYVPDTEFALVDIEEEDKESALSYHSEKLAI 911

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           AYGL+K+ P T LRV+KNLRVCGDCH  +K IS + +REIV+RDA R+HHF+ G CSC D
Sbjct: 912 AYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISNVFQREIVLRDANRFHHFRSGICSCGD 971

Query: 609 FW 610
           +W
Sbjct: 972 YW 973



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/415 (26%), Positives = 206/415 (49%), Gaps = 38/415 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  +++ G  Q+  + N+ I+ Y K   V YA  +  +M + D +SW ++++   ++
Sbjct: 317 KQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARS 376

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR-LGKQVHACFVLSPFCDDDV 141
            L + ++ +F  +L    L PD F   S+++AC SL  +  +G+QVH C + +    D  
Sbjct: 377 GLEECSLRLFIDLLR-SGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKAGIVLDSF 435

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V ++L+D+Y+K                                G+ ++A  +F      +
Sbjct: 436 VSTALIDVYSK-------------------------------GGKMEEAELLFHNQDGFD 464

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           L  W A++ G   S N  +A   F  M   G +  D +  ++   A      L+ GKQIH
Sbjct: 465 LASWNAMMHGFTVSDNYREALRLFSLMHERG-EKADQITFANAAKAAGCLVRLQQGKQIH 523

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
            +VI + +   LF+ + I+DMY KC ++ +A+ +F ++   D V+WT++I G  ++G+ E
Sbjct: 524 AVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEE 583

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-DYGITPSLQHYTC 380
           + L  Y +M  AGV+P+E TF  L+ ACS +  + +G+++  ++++ +    P +   T 
Sbjct: 584 QALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQGKQIHANIMKLNCAFDPFVM--TS 641

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
           L+D+ ++ G++++A  L + M        W A++     H N E      N + S
Sbjct: 642 LVDMYAKCGNIEDAYGLFRRMNTRS-VALWNAMIVGLAQHGNAEEALNFFNEMKS 695



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 153/593 (25%), Positives = 256/593 (43%), Gaps = 78/593 (13%)

Query: 15  RHQIA----LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--RD 68
           RH IA    +  K  HA I+  GL+    + N LI  Y KC  +  A  L +  PQ  RD
Sbjct: 21  RHAIADSDLILGKRTHAVIVTSGLNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRD 80

Query: 69  HVSWASILTAY------NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
            V++ +IL AY      +      +   IF  +     L   H   + L K C   G+  
Sbjct: 81  LVTYNAILAAYAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRH-TLSPLFKLCLLYGSPS 139

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
             + +    V      D  V  +LV++YAK      AR +FD + +++ V W  M+ AY 
Sbjct: 140 ASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYV 199

Query: 183 ----------------RSGRKKDAMEI------------FEQ------APVRNLFL---- 204
                           RSG + D + +            FE+      A    LF+    
Sbjct: 200 EMGAGDEVLGLFSAFHRSGLRPDCVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDD 259

Query: 205 -----WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                W   +S  +Q+    +A   F +M +  V   D L    I+   A+   LELGKQ
Sbjct: 260 SDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVP-CDSLTYIVILSVVASLNHLELGKQ 318

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           IHG V+  G++  + ++N+ ++MY K   +  A+ +FG+M+  D++SW ++I G A+ G 
Sbjct: 319 IHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISGCARSGL 378

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHV-GLVGKGRKLFKSMIEDYGITPSLQHY 378
            E +L L+ +++ +G+ P++ T   ++ ACS +      GR++    ++  GI       
Sbjct: 379 EECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEESYCVGRQVHTCALKA-GIVLDSFVS 437

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
           T L+D+ S+ G ++EAE L        D  +W A++    H        R A  L SL  
Sbjct: 438 TALIDVYSKGGKMEEAELLFHNQD-GFDLASWNAMM----HGFTVSDNYREALRLFSLMH 492

Query: 439 E--DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS-YIEFGKGSHIFYAGET 495
           E  + +  I  +N   +A     + + +++ +V+ +K    Y  ++  G        GE 
Sbjct: 493 ERGEKADQITFANAAKAAGCLVRLQQGKQIHAVV-IKMRFHYDLFVISGILDMYLKCGEM 551

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLF-WHSERLA 547
               K  +F  +   D        V  T+ +   +E  E+E+ LF +H  RLA
Sbjct: 552 KSARK--VFNQIPSPDD-------VAWTTVISGCVENGEEEQALFTYHQMRLA 595



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 107/487 (21%), Positives = 198/487 (40%), Gaps = 49/487 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            ++C  +      + L    +K+GL     +   L++ Y K   ++ A  L + MP RD 
Sbjct: 129 FKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDV 188

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA-TRLGKQVH 128
           V W  ++ AY +     + + +FS       L+PD     +++   G      R  +QV 
Sbjct: 189 VLWNVMMKAYVEMGAGDEVLGLFSA-FHRSGLRPDCVSVRTILMGVGKKTVFERELEQVR 247

Query: 129 ACFVLSPFCDDD---VVKSSLVDMYAKCGLPNNARAVF-DSIKLK---NSVSWTAMLSA- 180
           A       CDDD    V +  +  Y + G    A   F D IK +   +S+++  +LS  
Sbjct: 248 AYATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVV 307

Query: 181 ----------------------------------YARSGRKKDAMEIFEQAPVRNLFLWT 206
                                             Y ++G    A  +F Q    +L  W 
Sbjct: 308 ASLNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWN 367

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF-AVLELGKQIHGLVI 265
            ++SG  +S  E  +   FI++ R G+ + D   ++S++ AC++      +G+Q+H   +
Sbjct: 368 TVISGCARSGLEECSLRLFIDLLRSGL-LPDQFTITSVLRACSSLEESYCVGRQVHTCAL 426

Query: 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA 325
             G     F+S A++D+Y+K   +  A+ +F      D+ SW +++ G        E L 
Sbjct: 427 KAGIVLDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALR 486

Query: 326 LYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385
           L+  M   G K +++TF     A   +  + +G+++   +I+       L   + +LD+ 
Sbjct: 487 LFSLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIK-MRFHYDLFVISGILDMY 545

Query: 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYI 445
            + G +  A  +   +P  PD+  W  ++S C  +   E       H + L    P  Y 
Sbjct: 546 LKCGEMKSARKVFNQIP-SPDDVAWTTVISGCVENGEEEQAL-FTYHQMRLAGVQPDEYT 603

Query: 446 LLSNVYA 452
             + V A
Sbjct: 604 FATLVKA 610


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/595 (38%), Positives = 358/595 (60%), Gaps = 8/595 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLV--QYAHHLLEEMPQRDHVSWASILTAY 79
           +K +HA+I+  GL Q   +   LI    K ++    Y   +  ++   +   + +++  Y
Sbjct: 62  IKQVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPFLYNALIRGY 121

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL-SPFCD 138
                 +++   +S M   + + P  F F +L KACG+     LG+Q+H   +L   F +
Sbjct: 122 LIEERLKESTEFYSLMRK-EGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVGGFGE 180

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  V +S++DMY KCG     R VFD +  ++ +SWT ++SAY +SG  + A E+F+  P
Sbjct: 181 DLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLP 240

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
           V+++  WT +VSG  Q+    +A   F +M+  GV+  D + L  ++ ACA     +   
Sbjct: 241 VKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVE-TDEITLIGVISACAQLGAAKYAD 299

Query: 259 QIHGLV--IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
            I  +      G +  + + +A++DMY+KC  +  A  +F  M+ ++V S++S+I+G A 
Sbjct: 300 WIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAM 359

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           HG+  + + L+DEMV   +KPN VTF+G++ ACSH G+V +G ++F+ M + YGI PS  
Sbjct: 360 HGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSAD 419

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
           HYTC++DLL R+G L EA  L+K MP EP    W ALL AC+ H++ ++    ANHL  L
Sbjct: 420 HYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFEL 479

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS-HIFYAGET 495
           +P    +YILL+N+YAS   W  VS VRKLM    ++K P +S+IE  KG  H F++G+ 
Sbjct: 480 EPYCIGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGMVHEFFSGDM 539

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKS 555
           +HP   EI + L +L   ++ +GY P  SSV +D+  ++K R L  HSE+LA+A+GL+ +
Sbjct: 540 THPRSGEIKQALEDLLDRLEAKGYQPHLSSVSYDVNDEDKRRILMTHSEKLALAFGLIST 599

Query: 556 VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +PG+ +R+VKNLR+C DCH V+   S+IT REI+VRD  R+HHF DG CSC +FW
Sbjct: 600 IPGSKIRIVKNLRICEDCHSVICGASQITGREIIVRDIMRFHHFHDGICSCGNFW 654


>gi|414885035|tpg|DAA61049.1| TPA: hypothetical protein ZEAMMB73_995105 [Zea mays]
          Length = 824

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 238/622 (38%), Positives = 351/622 (56%), Gaps = 52/622 (8%)

Query: 29  IIKLGLHQYGPLP-------NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           ++ L  H +   P       N ++ AY +   +Q A  L +   + D +SW +++  Y Q
Sbjct: 215 LVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISWNALMAGYVQ 274

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA--CFVLSPFCDD 139
            +  ++   +F+ M      Q D   + ++V      G  R G    A   F ++P   D
Sbjct: 275 RSQIEEAQKMFNKMP-----QRDVVSWNTMVS-----GYARRGDMAEARRLFDVAPI-RD 323

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
               +++V  YA+ G+   A+ VFD++  KN+VSW AM++AY +    ++A E+F+  P 
Sbjct: 324 VFTWTAIVSGYAQNGMLEEAKRVFDAMPDKNAVSWNAMMAAYVQRRMMEEAKELFDAMPC 383

Query: 200 RNLFLWTALVSGLVQSR--NEIDAFYS-----------------------------FIEM 228
           RN+  W  +++G  Q+   +E  A +                              F EM
Sbjct: 384 RNVASWNTMLTGYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEM 443

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
            R G + V+    + ++  CA+ A LE G Q+H  +I  GY    F+ NA++ MY KC  
Sbjct: 444 GRCG-EWVNRSAFACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGNALLAMYFKCGS 502

Query: 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
           +  A   F  M  +DVVSW ++I G A+HG  +E L ++D M     KP+++T VG++ A
Sbjct: 503 MEEAHSAFEEMEERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDDITLVGVLAA 562

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           CSH GLV KG   F SM  D+G+    +HYTC++DLL R+G LDEA NL+K MPFEPD  
Sbjct: 563 CSHSGLVEKGISYFYSMHRDFGVATKPEHYTCMIDLLGRAGRLDEAVNLMKDMPFEPDST 622

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
            W ALL A + HRN+E+G   A  +  L+PE+   Y+LLSN+YAS+  W+ V K+R +M 
Sbjct: 623 MWGALLGASRIHRNSELGRNAAEKIFELEPENAGMYVLLSNIYASSGKWRDVDKMRHIMH 682

Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH 528
              VKK PG+S+IE     H F  G++ HP +++I+  L +LD  MK+ GYV  T  VLH
Sbjct: 683 ERGVKKVPGFSWIEVQNKVHTFSVGDSVHPEREDIYAFLEDLDIRMKKAGYVSATDMVLH 742

Query: 529 DMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREI 588
           D+E++EKE  L +HSE+LAVAYG+LK  PG  +RV+KNLRVC DCH   K IS I  R I
Sbjct: 743 DVEEEEKEHMLKYHSEKLAVAYGILKIPPGRPIRVIKNLRVCRDCHTAFKCISAIEGRLI 802

Query: 589 VVRDATRYHHFKDGKCSCNDFW 610
           ++RD+ R+HHF+DG CSC D+W
Sbjct: 803 ILRDSNRFHHFRDGSCSCGDYW 824



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 177/402 (44%), Gaps = 55/402 (13%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +I ++    LV  A H  +  P++D VSW  +L AY +    Q+   +F +    D +
Sbjct: 204 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAI 263

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
                                                     ++L+  Y +      A+ 
Sbjct: 264 S----------------------------------------WNALMAGYVQRSQIEEAQK 283

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F+ +  ++ VSW  M+S YAR G   +A  +F+ AP+R++F WTA+VSG  Q+    +A
Sbjct: 284 MFNKMPQRDVVSWNTMVSGYARRGDMAEARRLFDVAPIRDVFTWTAIVSGYAQNGMLEEA 343

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M  +     + +  ++++ A     ++E  K++   +      S     N ++ 
Sbjct: 344 KRVFDAMPDK-----NAVSWNAMMAAYVQRRMMEEAKELFDAMPCRNVASW----NTMLT 394

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
            YA+   +  A+ IFG M +KD VSW +++   +Q G +EETL L+ EM   G   N   
Sbjct: 395 GYAQAGMLDEARAIFGMMPQKDAVSWAAMLAAYSQIGFSEETLQLFKEMGRCGEWVNRSA 454

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIE-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           F  ++  C+ +  +  G +L   +I+  YG+   + +   LL +  + G ++EA +  + 
Sbjct: 455 FACVLSTCADIAALECGMQLHSRLIKAGYGVGCFVGN--ALLAMYFKCGSMEEAHSAFEE 512

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHL--LSLKPED 440
           M  E D  +W  +++    H   +    V + +   S KP+D
Sbjct: 513 ME-ERDVVSWNTMIAGYARHGFGKEALEVFDTMRKTSTKPDD 553



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/375 (21%), Positives = 165/375 (44%), Gaps = 31/375 (8%)

Query: 129 ACFVLSPFCDDDVVKSS-LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           AC    P  D +V++ +  +  + + G   +A  +F ++  +++ ++  ML+ YA +GR 
Sbjct: 97  ACITGKP--DMEVIRRNRAITAHMRAGRVPDAERLFAAMPRRSTSTYNTMLAGYAANGRL 154

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
             A+  F   P  + F +  L+  L  S +  D    F EM      + D +  + ++ +
Sbjct: 155 PQALSFFRSIPRPDSFSYNTLLHALGVSSSLADVRALFDEM-----PVKDSVSYNVMISS 209

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
            AN  ++ L +        L  E      N ++  Y +   I  A+++F      D +SW
Sbjct: 210 HANHGLVSLARHY----FDLAPEKDAVSWNGMLAAYVRNGRIQEARELFDSRTEWDAISW 265

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            +++ G  Q  Q EE   ++++M    V    V++  ++   +  G + + R+LF     
Sbjct: 266 NALMAGYVQRSQIEEAQKMFNKMPQRDV----VSWNTMVSGYARRGDMAEARRLF----- 316

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
           D      +  +T ++   +++G L+EA+ +  AMP + +  +W A+++A    R  E   
Sbjct: 317 DVAPIRDVFTWTAIVSGYAQNGMLEEAKRVFDAMP-DKNAVSWNAMMAAYVQRRMME--- 372

Query: 428 RVANHLLSLKP-EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
             A  L    P  + +S+  +   YA A M   + + R +  +M  K    ++ +     
Sbjct: 373 -EAKELFDAMPCRNVASWNTMLTGYAQAGM---LDEARAIFGMMPQKDAVSWAAM-LAAY 427

Query: 487 SHIFYAGETSHPLKD 501
           S I ++ ET    K+
Sbjct: 428 SQIGFSEETLQLFKE 442


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/589 (38%), Positives = 343/589 (58%), Gaps = 4/589 (0%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA ++  GL     + + ++  Y     +  +  +   + +   + + S++ AY +   
Sbjct: 92  VHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFNSMIRAYARYGF 151

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            ++T++ + +M +      D+F F  ++K+   L +  +GK VH   +      D  V +
Sbjct: 152 AERTVATYFSMHSWG-FTGDYFTFPFVLKSSVELLSVWMGKCVHGLILRIGLQFDLYVAT 210

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SL+ +Y KCG  N+A  VFD++ +++  SW A+L+ Y +SG    A+ IFE+ P RN+  
Sbjct: 211 SLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVS 270

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLSSIVGACANFAVLELGKQIHGL 263
           WT ++SG  QS     A   F EM +E   +  + + + S++ ACA  + LE G+QIH L
Sbjct: 271 WTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHEL 330

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHGQAE 321
              +G  S   +  A+  MYAKC  ++ A++ F ++ R  K++++W ++I   A +G   
Sbjct: 331 ACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGL 390

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           + ++ + EM+ AG++P+++TF GL+  CSH GLV  G K F  M   Y I P ++HY C+
Sbjct: 391 QAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACV 450

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
            DLL R+G L EA  L+  MP       W +LL+AC+ HRN EM    A  L  L+PE+ 
Sbjct: 451 ADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNLEMAETAARKLFVLEPENT 510

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            +Y+LLSN+YA A  WQ V K+R ++     KK PG S+IE    +H+F  G+TSHP   
Sbjct: 511 GNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWIEINGKAHMFLGGDTSHPQGK 570

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           EI+  L  L  +MK  GY PDTS VLHD+ ++EKE  L  HSE+LAVA+G+L +   TVL
Sbjct: 571 EIYMFLEALPEKMKAAGYFPDTSYVLHDISEEEKEFNLIAHSEKLAVAFGILNTPAETVL 630

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           RV KNLR+CGDCH  M  IS I  RE++VRD  R+HHFK G CSC D+W
Sbjct: 631 RVTKNLRICGDCHTAMVFISEIYGREVIVRDINRFHHFKGGCCSCGDYW 679



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 106/444 (23%), Positives = 190/444 (42%), Gaps = 105/444 (23%)

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162
           P    +A + +    L   +LG QVHA  +L       +V S +V  YA  G  +++ +V
Sbjct: 68  PPILSYAPVFQFLTGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSV 127

Query: 163 FDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
           F+ I   +S+ + +M+ AYAR G        F +  V   F         + S      +
Sbjct: 128 FNGIGEPSSLLFNSMIRAYARYG--------FAERTVATYF--------SMHSWGFTGDY 171

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
           ++F            P VL S V        + +GK +HGL++ +G +  L+++ +++ +
Sbjct: 172 FTF------------PFVLKSSV----ELLSVWMGKCVHGLILRIGLQFDLYVATSLIIL 215

Query: 283 YAKCSDII-------------------------------AAKDIFGRMRRKDVVSWTSII 311
           Y KC +I                                AA  IF RM  +++VSWT++I
Sbjct: 216 YGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMI 275

Query: 312 VGTAQHGQAEETLALYDEMV--SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK------ 363
            G +Q G A++ L+L+DEMV   +GV+PN VT + ++ AC+ +  + +GR++ +      
Sbjct: 276 SGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPACAQLSTLERGRQIHELACRMG 335

Query: 364 ---------SMIEDYGITPSLQHYTCLLDLLSRS-----------------GHLDEAENL 397
                    ++   Y    SL       D L+R+                 GH  +A + 
Sbjct: 336 LNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVST 395

Query: 398 IKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP--SSYILLSNVYA 452
            + M     +PD+ T+  LLS C H    ++G +  NH+ +    +P    Y  ++++  
Sbjct: 396 FREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFNHMSTTYSINPRVEHYACVADLLG 455

Query: 453 SAAMWQHVSKVRKLMSVMEVKKEP 476
            A     +++  KL+  M +   P
Sbjct: 456 RAG---RLAEASKLVGEMPMPAGP 476



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 38/231 (16%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKC------------------------------- 51
           K +H  I+++GL     +  +LI  YGKC                               
Sbjct: 191 KCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKS 250

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDK-LQPDHFVFAS 110
             +  A  + E MP R+ VSW ++++ Y+Q+ L Q+ +S+F  M+  D  ++P+     S
Sbjct: 251 GCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMS 310

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL-- 168
           ++ AC  L     G+Q+H          +  V  +L  MYAKCG   +AR  FD +    
Sbjct: 311 VLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNE 370

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFE---QAPVR-NLFLWTALVSGLVQS 215
           KN ++W  M++AYA  G    A+  F    QA ++ +   +T L+SG   S
Sbjct: 371 KNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHS 421



 Score = 44.7 bits (104), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 86/202 (42%), Gaps = 16/202 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM--PQR 67
           L  CA+       + +H    ++GL+    +   L   Y KC  +  A +  +++   ++
Sbjct: 312 LPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEK 371

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG--- 124
           + ++W +++TAY       + +S F  M+    +QPD   F  L+  C   G   +G   
Sbjct: 372 NLIAWNTMITAYASYGHGLQAVSTFREMIQAG-IQPDDITFTGLLSGCSHSGLVDVGLKY 430

Query: 125 -KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYA 182
              +   + ++P  +     + + D+  + G    A  +   + +    S W ++L+A  
Sbjct: 431 FNHMSTTYSINPRVEH---YACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAAC- 486

Query: 183 RSGRKKDAMEIFEQAPVRNLFL 204
              RK   +E+ E A  R LF+
Sbjct: 487 ---RKHRNLEMAETA-ARKLFV 504


>gi|449458017|ref|XP_004146744.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Cucumis sativus]
          Length = 678

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 229/628 (36%), Positives = 352/628 (56%), Gaps = 40/628 (6%)

Query: 21  TVKTLHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           T+  LH++I+     +  P L   L+ AY        A ++ +   +++ V +  ++ +Y
Sbjct: 53  TLNKLHSKIVINEHLRIDPTLAIKLMRAYSAQGETSVARYIFDRSLEKNVVFFNVMIRSY 112

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
              NL  + +SIF  ML+     PDH+ F  ++KAC  L   R+G QVH   V      +
Sbjct: 113 VNNNLYVEALSIFQVMLSC-AFNPDHYTFPCVLKACSGLDNLRVGLQVHDAIVKVGLDTN 171

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI------ 193
             + ++LV MY KCG    AR V D +  ++ VSW +M++ YA+SG+  DA+EI      
Sbjct: 172 LFIGNALVAMYGKCGCLREARKVLDQMPYRDVVSWNSMVAGYAQSGQFDDALEICKEMDS 231

Query: 194 -------------------------------FEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
                                          FE+   +NL  W  +++  V +    +A 
Sbjct: 232 LNLNHDAGTMASLSPVVCYTSLENVQYIHNMFERMTKKNLISWNVMIAIYVNNSMPNEAV 291

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
             F++M   G+   D + ++S++ AC + + L LG+++H  +        L + NA++DM
Sbjct: 292 SLFLQMEECGMK-PDAVTIASLLPACGDLSALFLGRRLHKYIEKGNLRPNLLLENALLDM 350

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           YAKC  +  A+D+F +MR +DVVSWTS++    + GQ  + +AL+ +M+ +G  P+ + F
Sbjct: 351 YAKCGCLEEARDVFDKMRLRDVVSWTSMMSAYGRSGQGYDAVALFAKMLDSGQNPDSIAF 410

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
           V ++ ACSH GL+ +GR  F+ M E YGI P ++H+ C++DL  R+G ++EA + IK MP
Sbjct: 411 VSVLSACSHTGLLDQGRHYFRMMTEQYGIVPRIEHFACMVDLFGRAGEVEEAYSFIKQMP 470

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462
            EP+E  W ALLSAC+ H   ++G   A+ L  L P+    Y+LLSN+YA A MW+ V  
Sbjct: 471 MEPNERVWGALLSACRVHSKMDIGLVAADLLFQLAPKQSGYYVLLSNIYAKAGMWKDVMN 530

Query: 463 VRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPD 522
           VR  M  + +KK PG S +E     H F AG+  HP    I+  L  L  +MK  GY+P 
Sbjct: 531 VRYAMKKIGIKKVPGISNVELNGQVHTFLAGDQYHPQAKNIYGELDVLVGKMKELGYIPQ 590

Query: 523 TSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISR 582
           T S LHD+E ++KE  L  HSE+LA+ + +L +  GT +R+ KNLRVCGDCHI +K+IS+
Sbjct: 591 TESALHDVEVEDKECHLAIHSEKLAIVFAILNTKQGTPIRITKNLRVCGDCHIAIKLISK 650

Query: 583 ITKREIVVRDATRYHHFKDGKCSCNDFW 610
           I  R I+VRD  R+HHF +G CSC D+W
Sbjct: 651 IVSRNIIVRDCNRFHHFSNGICSCGDYW 678


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/586 (37%), Positives = 345/586 (58%), Gaps = 2/586 (0%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H    KLG      +   LI  Y  C  +  A  L ++M   D V+W  I+  Y Q   
Sbjct: 143 IHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGH 202

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
               + +F  M + D ++PD  +  +++ ACG  G    G+ +H     + +  D  +++
Sbjct: 203 YDDALRLFEDMRSSD-MKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAIDSHLQT 261

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +L++MYA CG  + AR ++D +  K+ +  TAMLS YA+ G  KDA  IF+Q   R+L  
Sbjct: 262 ALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVC 321

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W+A++SG  +S    +A   F EM ++   + D + + S++ AC++   L     IH  V
Sbjct: 322 WSAMISGYAESDQPQEALKLFDEMLQKR-SVPDQITMLSVISACSHVGALAQANWIHTYV 380

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
              G+   L ++NA++DMYAKC +++ A+++F  M RK+V+SW+S+I   A HG A+  +
Sbjct: 381 DRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGNADSAI 440

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            L+  M    ++PN VTF+G++YAC H GLV +G KLF SMI ++GI+P+ +HY C++DL
Sbjct: 441 KLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEKLFSSMINEHGISPTREHYGCMVDL 500

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
             R+  L +A  LI+ MPF P+   W +L+SAC+ H   E+G   A  LL L+P+   + 
Sbjct: 501 YCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVHGEAELGEFAAKRLLELEPDHDGAL 560

Query: 445 ILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIF 504
           ++LSN+YA    W  V  +RK MS   + KE   S IE     H+F   +  H   DEI+
Sbjct: 561 VVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASSRIEINNQVHMFMMADRYHKQSDEIY 620

Query: 505 ELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVV 564
           E L E+ +++K  GY P TS +L D+E+++K+  + WHSE+LAV YGL+     + +R+V
Sbjct: 621 EKLDEVVSKLKLVGYKPSTSGILIDLEEEDKKELVLWHSEKLAVCYGLISRRNESCIRIV 680

Query: 565 KNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           KNLR+C DCH  MK++S++ + EIVVRD TR+HH   G CSC D+W
Sbjct: 681 KNLRICEDCHSFMKLVSKVYQIEIVVRDRTRFHHCSGGICSCRDYW 726



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 196/383 (51%), Gaps = 14/383 (3%)

Query: 75  ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134
           +L   ++++ P+KTI ++  + A++    D F F SL+KA   + A   G ++H      
Sbjct: 91  LLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVSAFNHGLEIHGLASKL 150

Query: 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
            F DD  +++ L+ MYA C    +AR +FD +   ++V+W  ++  Y ++G   DA+ +F
Sbjct: 151 GFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIIDGYCQNGHYDDALRLF 210

Query: 195 EQAPVRNL----FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
           E     ++     +   ++S    + N +    +  E  ++    +D  + ++++   AN
Sbjct: 211 EDMRSSDMKPDSVILCTVLSACGHAGN-LSYGRTIHEFVKDNGYAIDSHLQTALINMYAN 269

Query: 251 FAVLELGKQIH-GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
              ++L ++I+ GL         L +S A++  YAK   +  A+ IF +M  +D+V W++
Sbjct: 270 CGAMDLARKIYDGLS-----SKHLIVSTAMLSGYAKLGMVKDARFIFDQMIERDLVCWSA 324

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G A+  Q +E L L+DEM+     P+++T + +I ACSHVG + +      + ++  
Sbjct: 325 MISGYAESDQPQEALKLFDEMLQKRSVPDQITMLSVISACSHVGALAQA-NWIHTYVDRS 383

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G   +L     L+D+ ++ G+L +A  + + MP   +  +W+++++A   H N +   ++
Sbjct: 384 GFGRALSVNNALIDMYAKCGNLVKAREVFENMP-RKNVISWSSMINAFAMHGNADSAIKL 442

Query: 430 ANHLLSLKPEDPSSYILLSNVYA 452
              +  +  E P+    +  +YA
Sbjct: 443 FRRMKEVNIE-PNGVTFIGVLYA 464



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 102/210 (48%), Gaps = 3/210 (1%)

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F Q P  +      L+  L +S       + +  +R      +D     S++ A +  +
Sbjct: 76  VFSQIPNPHTHFSNQLLRHLSRSSFPEKTIFLYHNLRAINAFALDRFSFPSLLKAVSKVS 135

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
               G +IHGL   LG+    FI   ++ MYA C  I+ A+ +F +M   D V+W  II 
Sbjct: 136 AFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKMCHPDAVAWNMIID 195

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED-YGI 371
           G  Q+G  ++ L L+++M S+ +KP+ V    ++ AC H G +  GR + + + ++ Y I
Sbjct: 196 GYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSACGHAGNLSYGRTIHEFVKDNGYAI 255

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
              LQ  T L+++ +  G +D A  +   +
Sbjct: 256 DSHLQ--TALINMYANCGAMDLARKIYDGL 283


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 227/586 (38%), Positives = 354/586 (60%), Gaps = 2/586 (0%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H    KLG      +   L+  Y  C  +  A  + ++M  RD V+W+ ++  Y Q+ L
Sbjct: 144 IHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGL 203

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
               + +F  M   + ++PD  + ++++ ACG  G    GK +H   + +    D  ++S
Sbjct: 204 FNDALLLFEEMKNYN-VEPDEMMLSTVLSACGRAGNLSYGKMIHDFIMENNIVVDPHLQS 262

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +LV MYA CG  + A  +F+ +  KN V+ TAM++ Y++ G+ ++A  +F Q   ++L  
Sbjct: 263 ALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVC 322

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W+A++SG  +S +  +A   F EM+  G+   D + + S++ ACA+   L+  K IH  V
Sbjct: 323 WSAMISGYAESDSPQEALNLFNEMQSLGIK-PDQVTMLSVITACAHLGALDQAKWIHLFV 381

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
              G+   L I+NA+++MYAKC  +  A+ IF +M RK+V+SWT +I   A HG A   L
Sbjct: 382 DKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPRKNVISWTCMISAFAMHGDAGSAL 441

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
             + +M    ++PN +TFVG++YACSH GLV +GRK+F SMI ++ ITP   HY C++DL
Sbjct: 442 RFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKIFYSMINEHNITPKHVHYGCMVDL 501

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
             R+  L EA  L++AMP  P+   W +L++AC+ H   E+G   A  LL L P+   ++
Sbjct: 502 FGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHGEIELGEFAAKRLLELDPDHDGAH 561

Query: 445 ILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIF 504
           + LSN+YA A  W+ V +VRKLM    + KE G S  E     H F   + SH   DEI+
Sbjct: 562 VFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCSRFELNNEIHEFLVADRSHKHADEIY 621

Query: 505 ELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVV 564
           E L E+ +++K  GY P+T S+L D+E++EK+  + WHSE+LA+ YGL++   G+ +R++
Sbjct: 622 EKLYEVVSKLKLVGYSPNTCSILVDLEEEEKKEVVLWHSEKLALCYGLMRDGTGSCIRII 681

Query: 565 KNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           KNLRVC DCH  +K+ S++ +REIVVRD TR+HH+KDG CSC D+W
Sbjct: 682 KNLRVCEDCHTFIKLASKVYEREIVVRDRTRFHHYKDGVCSCKDYW 727



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 117/442 (26%), Positives = 212/442 (47%), Gaps = 22/442 (4%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL---VQYAHHLLEEMPQRDHVSWASILTA 78
           +K +HAQI++  L +   L   L+     C L   + YA  +   +P+ +       L  
Sbjct: 39  LKQVHAQILRSKLDRSTSLLVKLV--ISSCALSSSLDYALSVFNLIPKPETHLCNRFLRE 96

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
            +++  P+KT+ ++  M     L  D F F  L+KA   + +   G ++H       F  
Sbjct: 97  LSRSEEPEKTLLVYERMRT-QGLAVDRFSFPPLLKALSRVKSLVEGLEIHGLAAKLGFDS 155

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  V++ LV MYA CG    AR +FD +  ++ V+W+ M+  Y +SG   DA+ +FE+  
Sbjct: 156 DPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLFNDALLLFEEMK 215

Query: 199 VRN-----LFLWTALVS-GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
             N     + L T L + G   + +     + FI    E   +VDP + S++V   A+  
Sbjct: 216 NYNVEPDEMMLSTVLSACGRAGNLSYGKMIHDFI---MENNIVVDPHLQSALVTMYASCG 272

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
            ++L   +   +        L  S A+V  Y+K   I  A+ +F +M +KD+V W+++I 
Sbjct: 273 SMDLALNLFEKMTPKN----LVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCWSAMIS 328

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G A+    +E L L++EM S G+KP++VT + +I AC+H+G + +  K     ++  G  
Sbjct: 329 GYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQA-KWIHLFVDKNGFG 387

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
            +L     L+++ ++ G L+ A  +   MP   +  +W  ++SA   H +     R   H
Sbjct: 388 GALPINNALIEMYAKCGSLERARRIFDKMP-RKNVISWTCMISAFAMHGDAGSALRFF-H 445

Query: 433 LLSLKPEDPSSYILLSNVYASA 454
            +  +  +P+    +  +YA +
Sbjct: 446 QMEDENIEPNGITFVGVLYACS 467


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/569 (38%), Positives = 342/569 (60%), Gaps = 10/569 (1%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+  Y K +++  A  L + MP RD +SW ++++ Y Q     +   +F+     +  
Sbjct: 205 NCLMGGYVKRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFN-----ESP 259

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             D F + ++V      G      +    F   P   +++  ++++  Y +      A  
Sbjct: 260 IRDVFTWTAMVSGYVQNGMV---DEARKYFDEMP-VKNEISYNAMLAGYVQYKKMVIAGE 315

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F+++  +N  SW  M++ Y ++G    A ++F+  P R+   W A++SG  Q+ +  +A
Sbjct: 316 LFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEA 375

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F+EM+R+G +  +    S  +  CA+ A LELGKQ+HG V+  G+E+  F+ NA++ 
Sbjct: 376 LNMFVEMKRDG-ESSNRSTFSCALSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLG 434

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC     A D+F  +  KDVVSW ++I G A+HG   + L L++ M  AGVKP+E+T
Sbjct: 435 MYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYARHGFGRQALVLFESMKKAGVKPDEIT 494

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
            VG++ ACSH GL+ +G + F SM  DY + P+ +HYTC++DLL R+G L+EAENL++ M
Sbjct: 495 MVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNM 554

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           PF+P   +W ALL A + H NTE+G + A  +  ++P++   Y+LLSN+YA++  W  V 
Sbjct: 555 PFDPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDVG 614

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           K+R  M    V+K  GYS++E     H F  G+  HP KD I+  L ELD +M+R GYV 
Sbjct: 615 KMRSKMREAGVQKVTGYSWVEVQNKIHTFSVGDCFHPEKDRIYAFLEELDLKMRREGYVS 674

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
            T  VLHD+E++EKE  L +HSE+LAVA+G+L    G  +RV+KNLRVC DCH  +K IS
Sbjct: 675 STKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPAGRPIRVMKNLRVCQDCHNAIKHIS 734

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I  R I++RD+ R+HHF +G CSC D+W
Sbjct: 735 KIVGRLIILRDSHRFHHFSEGICSCGDYW 763



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/381 (24%), Positives = 180/381 (47%), Gaps = 24/381 (6%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N ++  Y +   +  AH L + MP++D VSW ++L+ Y Q     +   +F+ M   + +
Sbjct: 112 NVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEAREVFNKMPHRNSI 171

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             +  + A+ V       A RL +      ++S  C        L+  Y K  +  +AR 
Sbjct: 172 SWNG-LLAAYVHNGRLKEARRLFESQSNWELISWNC--------LMGGYVKRNMLGDARQ 222

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +FD + +++ +SW  M+S YA+ G    A  +F ++P+R++F WTA+VSG VQ+    +A
Sbjct: 223 LFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEA 282

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS--NAI 279
              F EM      + + +  ++++     +  + +  ++   +       C  IS  N +
Sbjct: 283 RKYFDEM-----PVKNEISYNAMLAGYVQYKKMVIAGELFEAM------PCRNISSWNTM 331

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           +  Y +   I  A+ +F  M ++D VSW +II G AQ+G  EE L ++ EM   G   N 
Sbjct: 332 ITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYEEALNMFVEMKRDGESSNR 391

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
            TF   +  C+ +  +  G+++   +++  G          LL +  + G  DEA ++ +
Sbjct: 392 STFSCALSTCADIAALELGKQVHGQVVKA-GFETGCFVGNALLGMYFKCGSTDEANDVFE 450

Query: 400 AMPFEPDEPTWAALLSACKHH 420
            +  E D  +W  +++    H
Sbjct: 451 GIE-EKDVVSWNTMIAGYARH 470



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 154/357 (43%), Gaps = 57/357 (15%)

Query: 136 FCDDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
           F D D+V  +  +  + + G  ++A  VF+S+  ++SVS+ AM+S Y R+ +   A ++F
Sbjct: 41  FKDPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLF 100

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
           ++ P R+LF W  +++G V++R   +A   F  M ++ V   + ++         + A  
Sbjct: 101 DKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDEARE 160

Query: 255 ELGKQIH-------GLVIA------LGYESCLFIS---------NAIVDMYAKCSDIIAA 292
              K  H       GL+ A      L     LF S         N ++  Y K + +  A
Sbjct: 161 VFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVKRNMLGDA 220

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
           + +F RM  +DV+SW ++I G AQ G   +   L++E     V     T+  ++      
Sbjct: 221 RQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDV----FTWTAMVSGYVQN 276

Query: 353 GLVGKGRKLFKSMI------------------------EDYGITP--SLQHYTCLLDLLS 386
           G+V + RK F  M                         E +   P  ++  +  ++    
Sbjct: 277 GMVDEARKYFDEMPVKNEISYNAMLAGYVQYKKMVIAGELFEAMPCRNISSWNTMITGYG 336

Query: 387 RSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           ++G + +A  L   MP + D  +WAA++S    + + E      N  + +K +  SS
Sbjct: 337 QNGGIAQARKLFDMMP-QRDCVSWAAIISGYAQNGHYE---EALNMFVEMKRDGESS 389



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 70/335 (20%), Positives = 135/335 (40%), Gaps = 44/335 (13%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K +H Q++K G      + N L+  Y KC     A+ + E + ++D 
Sbjct: 398 LSTCADIAALELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDV 457

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++  Y +    ++ + +F +M     ++PD      ++ AC   G    G +   
Sbjct: 458 VSWNTMIAGYARHGFGRQALVLFESMKKAG-VKPDEITMVGVLSACSHSGLIDRGTE--- 513

Query: 130 CFVLSPFCDDDVVKSS-----LVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYAR 183
            +  S   D +V  +S     ++D+  + G    A  +  ++     + SW A+L A   
Sbjct: 514 -YFYSMDRDYNVKPTSKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRI 572

Query: 184 SGR----KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
            G     +K A  +F+  P +N  ++  L +    S   +D      +MR  GV  V   
Sbjct: 573 HGNTELGEKAAEMVFKMEP-QNSGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKV--- 628

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA--KDIFG 297
                      ++ +E+  +IH   +               D +    D I A  +++  
Sbjct: 629 ---------TGYSWVEVQNKIHTFSVG--------------DCFHPEKDRIYAFLEELDL 665

Query: 298 RMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           +MRR+  VS T +++   +  + E  L  + E ++
Sbjct: 666 KMRREGYVSSTKLVLHDVEEEEKEHMLKYHSEKLA 700


>gi|224120376|ref|XP_002318314.1| predicted protein [Populus trichocarpa]
 gi|222858987|gb|EEE96534.1| predicted protein [Populus trichocarpa]
          Length = 539

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/531 (41%), Positives = 331/531 (62%), Gaps = 21/531 (3%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           ++PD     +++ AC S+GA   GK VH   V S   +D  V ++LVDMYAKCG+ + A 
Sbjct: 9   MRPDVVSLVNVLPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEAS 68

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL----WTALVSGLVQSR 216
            VFD IK K+ VSW AM++ Y++ GR +DA+ +FE+    N+ L    W+A+++   Q  
Sbjct: 69  KVFDRIKEKDVVSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRG 128

Query: 217 NEIDAFYSFIEM----------------RREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
              +    F EM                +++G+   +   +S  + ACA  A L LG+QI
Sbjct: 129 LGCETLDVFREMQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQI 188

Query: 261 HGLVIALGYESC-LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           H  ++   ++S  L+++N ++DMYAK  DI  A+ +F  +++K+ VSWTS++ G   HG+
Sbjct: 189 HAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGR 248

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
            +E L ++DEM   G++P+ VT + ++YACSH G++ +G + F SM +++G+ P  +HY 
Sbjct: 249 GKEALEVFDEMRRVGLQPDGVTLLVVLYACSHSGMIDQGIEFFNSMSKEFGVIPGQEHYA 308

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++DLL R+G L+EA  LI+ M  EP    W ALLS C+ H N E+G   A  LL L  E
Sbjct: 309 CMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSGCRIHANVELGEHAAKQLLELNSE 368

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           +  SY LLSN+YA+A  W+ V++VR LM    ++K PG S+++  KG+  FY  + +HP 
Sbjct: 369 NDGSYTLLSNIYANARRWKDVARVRSLMKNSGIRKRPGCSWVQGKKGTTTFYVADKTHPQ 428

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
             +I+E+L  L   +K  GYVP+TS  LHD++ +EK   LF HSE+LA+AYG+L S PG 
Sbjct: 429 SKQIYEILRSLTQRIKVLGYVPETSFALHDVDDEEKVDLLFEHSEKLALAYGILISAPGA 488

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +R+ KNLRVCGDCH  +  IS I   EI++RD++R+HHFK G CSC+ +W
Sbjct: 489 PIRITKNLRVCGDCHNAITYISMIIDHEIILRDSSRFHHFKKGSCSCSGYW 539



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 69/240 (28%), Positives = 110/240 (45%), Gaps = 54/240 (22%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA     L  K +H   ++ G  +   + N L+D Y KC +V  A  + + + ++D 
Sbjct: 20  LPACASMGAWLHGKAVHGIAVRSGSFEDLFVGNALVDMYAKCGMVDEASKVFDRIKEKDV 79

Query: 70  VSWASILTAYNQ------------------------------ANLPQK------------ 87
           VSW +++  Y+Q                              A   Q+            
Sbjct: 80  VSWNAMVNGYSQIGRFEDALGLFEKMREENIELNVVSWSAVIAAFAQRGLGCETLDVFRE 139

Query: 88  --------TISIFSTMLALDKL-QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
                    + +FS M   D L +P+ F  +  + AC  L A RLG+Q+HA ++L    D
Sbjct: 140 MQHGEANDALELFSWMFKQDGLVKPNCFTISCALIACARLAALRLGRQIHA-YILRNHFD 198

Query: 139 DDV--VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
                V + L+DMYAK G  + AR VFD++K KN VSWT++++ Y   GR K+A+E+F++
Sbjct: 199 SAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKNFVSWTSLMTGYGMHGRGKEALEVFDE 258



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 81/178 (45%), Gaps = 12/178 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQ-YGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L  CAR       + +HA I++      +  + N LID Y K   +  A  + + + Q++
Sbjct: 173 LIACARLAALRLGRQIHAYILRNHFDSAFLYVANCLIDMYAKSGDIDVARFVFDNLKQKN 232

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW S++T Y      ++ + +F  M  +  LQPD      ++ AC   G    G +  
Sbjct: 233 FVSWTSLMTGYGMHGRGKEALEVFDEMRRVG-LQPDGVTLLVVLYACSHSGMIDQGIE-- 289

Query: 129 ACFVLSPFCDDDVVK-----SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
             F  S   +  V+      + +VD+  + G  N A  + + ++++ +S+ W A+LS 
Sbjct: 290 --FFNSMSKEFGVIPGQEHYACMVDLLGRAGRLNEAMELIEGMQMEPSSIVWVALLSG 345


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 240/652 (36%), Positives = 365/652 (55%), Gaps = 85/652 (13%)

Query: 6   YLHRL------------RVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL 53
           YLHR+              C RH+     K +HA            + N LI  Y KC  
Sbjct: 54  YLHRIPQPSPRLYSTLIAACLRHRKLELGKRVHAHTKASNFIPGIVISNRLIHMYAKCGS 113

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           +  A  L +E+PQ+D  SW ++++ Y      ++   +F  M        D+F + +++ 
Sbjct: 114 LVDAQMLFDEIPQKDLCSWNTMISGYANVGRIEQARKLFDEM-----PHRDNFSWNAVIS 168

Query: 114 ACGSLG------------------------------------ATRLGKQVHACFVLSPFC 137
              S G                                    + R GK++H   + S   
Sbjct: 169 GYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAAAAAISSLRRGKEIHGYLIRSGLE 228

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D+VV ++L+D+Y KCG  N AR +FD +  K+ VSWT M+      GRKK+   +F   
Sbjct: 229 LDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSWTTMIHRCFEDGRKKEGFSLF--- 285

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
             R+L     + SG+    NE    Y+F                + ++ ACA+ A  ++G
Sbjct: 286 --RDL-----MGSGV--RPNE----YTF----------------AGVLNACADLAAEQMG 316

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           K++HG +  +GY+   F ++A+V +Y+KC +   A+ +F +M R D+VSWTS+IVG AQ+
Sbjct: 317 KEVHGYMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQN 376

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           GQ +  L  ++ ++ +G KP+E+TFVG++ AC+H GLV  G + F S+ E +G+  +  H
Sbjct: 377 GQPDMALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADH 436

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
           Y C++DLL+RSG   EAEN+I  MP +PD+  WA+LL  C+ H N E+  R A  L  L+
Sbjct: 437 YACVIDLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELE 496

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
           PE+P++YI LSN+YA+A +W   +KVR  M    + K+PG S+IE  +  H+F  G+TSH
Sbjct: 497 PENPATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWIEIKRQVHVFLVGDTSH 556

Query: 498 PLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVP 557
           P   +I E L EL  +MK  GYV DT+ VLHD+E+++KE+ +F+HSE+LAVA+G++ + P
Sbjct: 557 PKISDIHEYLGELSKKMKEEGYVADTNFVLHDVEEEQKEQNIFYHSEKLAVAFGIISTSP 616

Query: 558 GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           GT ++V KNLR C DCH  MK IS+I +R+I+VRD+ R+H F DG CSC D+
Sbjct: 617 GTPIKVFKNLRTCVDCHNAMKYISKIVQRKIIVRDSNRFHCFVDGSCSCKDY 668



 Score =  175 bits (443), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 197/383 (51%), Gaps = 9/383 (2%)

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           +H  +  I+  + Q N  ++ +     +      QP   ++++L+ AC       LGK+V
Sbjct: 31  EHRRFEEIIELFCQQNRLKEAVDYLHRIP-----QPSPRLYSTLIAACLRHRKLELGKRV 85

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           HA    S F    V+ + L+ MYAKCG   +A+ +FD I  K+  SW  M+S YA  GR 
Sbjct: 86  HAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYANVGRI 145

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
           + A ++F++ P R+ F W A++SG V     ++A   F  M+       +   LSS + A
Sbjct: 146 EQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSSALAA 205

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
            A  + L  GK+IHG +I  G E    +  A++D+Y KC  +  A+ IF +M  KD+VSW
Sbjct: 206 AAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKDIVSW 265

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           T++I    + G+ +E  +L+ +++ +GV+PNE TF G++ AC+ +     G+++   M  
Sbjct: 266 TTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHGYMTR 325

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
             G  P     + L+ + S+ G+ + A  +   MP  PD  +W +L+     +   +M  
Sbjct: 326 -VGYDPFSFAASALVHVYSKCGNTETARRVFNQMP-RPDLVSWTSLIVGYAQNGQPDMAL 383

Query: 428 RVANHLL--SLKPEDPSSYILLS 448
           +    LL    KP++ +   +LS
Sbjct: 384 QFFESLLRSGTKPDEITFVGVLS 406


>gi|296083884|emb|CBI24272.3| unnamed protein product [Vitis vinifera]
          Length = 729

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 221/614 (35%), Positives = 357/614 (58%), Gaps = 15/614 (2%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            + C+  +     K ++  ++ +G      +  +++D + KC  +  A    EE+  +D 
Sbjct: 118 FKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDV 177

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
             W  +++ Y      +K +++F  M+ L+ ++P+    AS V AC +L   R G+++H 
Sbjct: 178 FMWNIMVSGYTSKGEFKKALNVFRKMV-LEGVKPNSITIASAVSACTNLSLLRHGREIHG 236

Query: 130 -CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAML--SAYARSGR 186
            C  +     D +V +SLVD YAKC     AR  F  IK  + VSW AML  + + + G 
Sbjct: 237 YCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGD 296

Query: 187 KKDAMEIFEQAPV----------RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
            K A+E F++  +          R++ +W +++S   QS   ++A     EM    V+ V
Sbjct: 297 GKAALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVE-V 355

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           + + + S + AC+  A L  GK+IH  +I  G ++C FI N+++DMY +C  I  ++ IF
Sbjct: 356 NTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIF 415

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
             M ++D+VSW  +I     HG   + + L+ +  + G+KPN +TF  L+ ACSH GL+ 
Sbjct: 416 DLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIE 475

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +G K FK M  +Y + P+++ Y C++DLLSR+G  +E    I+ MPFEP+   W +LL A
Sbjct: 476 EGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGA 535

Query: 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEP 476
           C+ H N ++    A +L  L+P+   +Y+L++N+Y++A  W+  +K+R LM    V K P
Sbjct: 536 CRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPP 595

Query: 477 GYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKE 536
           G S+IE  +  H F  G+TSHPL ++I   +  L  ++K  GYVPDT+ VL D+++ EKE
Sbjct: 596 GCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFDIKEIGYVPDTNFVLQDVDEDEKE 655

Query: 537 RQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRY 596
             L  HSE++A+A+GL+ +  GT LR++KNLRVCGDCH   K IS++ KR+I++RD  R+
Sbjct: 656 FSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDCHSATKFISKVEKRDIIMRDNYRF 715

Query: 597 HHFKDGKCSCNDFW 610
           HHF DG CSC D+W
Sbjct: 716 HHFVDGVCSCGDYW 729



 Score =  168 bits (425), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 130/495 (26%), Positives = 214/495 (43%), Gaps = 110/495 (22%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HAQ++  G+     L + L++ Y +   V+ A  + ++M +R+  SW +I+  Y     
Sbjct: 32  VHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGD 91

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            ++TI +F  M+  + ++PDHFVF  + KAC  L   R+GK V+   +   F  +  VK 
Sbjct: 92  YEETIKLFYLMVN-EGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKG 150

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           S++DM+ KCG  + AR  F+ I+ K+   W  M+S Y   G  K A+ +F +        
Sbjct: 151 SILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALNVFRK-------- 202

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                                  M  EGV   + + ++S V AC N ++L  G++IHG  
Sbjct: 203 -----------------------MVLEGVK-PNSITIASAVSACTNLSLLRHGREIHGYC 238

Query: 265 IAL-GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR---------------------- 301
           I +   +S L + N++VD YAKC  +  A+  FG +++                      
Sbjct: 239 IKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAVTGFTQYGDGK 298

Query: 302 ---------------------KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
                                +DVV W SII   AQ G++   L L  EM  + V+ N V
Sbjct: 299 AALEFFQRMHIACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTV 358

Query: 341 TFVGLIYACSHVGLVGKGRK---------------LFKSMIEDYGITPSLQHYTCLLDLL 385
           T V  + ACS +  + +G++               +  S+I+ YG   S+Q    + DL+
Sbjct: 359 TMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLM 418

Query: 386 SRS---------------GHLDEAENL---IKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
            +                G   +A NL    + M  +P+  T+  LLSAC H    E G 
Sbjct: 419 PQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGW 478

Query: 428 RVANHLLSLKPEDPS 442
           +    + +    DP+
Sbjct: 479 KYFKMMKTEYAMDPA 493



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 97/192 (50%), Gaps = 14/192 (7%)

Query: 233 VDIVDP----LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
           +D+ +P     + +SI+  C     L LG Q+H  ++  G + C F+ + ++++Y +   
Sbjct: 1   MDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGC 60

Query: 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
           +  A+ +F +M  ++V SWT+I+      G  EET+ L+  MV+ GV+P+   F  +  A
Sbjct: 61  VEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKA 120

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC----LLDLLSRSGHLDEAENLIKAMPFE 404
           CS +     G+ ++     DY ++   +  +C    +LD+  + G +D A    + + F+
Sbjct: 121 CSELKNYRVGKDVY-----DYMLSIGFEGNSCVKGSILDMFIKCGRMDIARRFFEEIEFK 175

Query: 405 PDEPTWAALLSA 416
            D   W  ++S 
Sbjct: 176 -DVFMWNIMVSG 186


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 226/601 (37%), Positives = 356/601 (59%), Gaps = 18/601 (2%)

Query: 16  HQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASI 75
           H  A  + TL    ++ GL          +D Y  C  + YA ++ +EM QRD V+W ++
Sbjct: 137 HGFAFKIATLSDPFVETGL----------MDMYAACGRINYARNVFDEMSQRDVVTWNTM 186

Query: 76  LTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP 135
           +  Y +  L  +   +F  M     + PD  +  ++V ACG  G  R  + ++   + + 
Sbjct: 187 IERYCRFGLLDEAFKLFEEMKD-SNVMPDEMILCNIVSACGRTGNMRYNRAIYDFLIEND 245

Query: 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
              D  + ++LV MYA  G  + A   F  + ++N    TAM+S Y+++GR  DA  IF+
Sbjct: 246 VRMDTHLLTALVTMYAGAGCMDMAMEFFRKMSVRNLFVSTAMVSGYSKAGRLDDARVIFD 305

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
           Q  +++L  WT ++S   +S +  +A   F EM   G+   D + + S++ AC N   L+
Sbjct: 306 QTEMKDLVCWTTMISAYAESDHPQEALRVFEEMCCSGIK-PDVVTMLSVISACVNLGTLD 364

Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
             K +H      G ES L I NA+++MYAKC  + AA+D+F +M  ++VVSW+S+I   A
Sbjct: 365 KAKWVHRYTHLNGLESVLPIDNALINMYAKCGGLDAARDVFEKMPTRNVVSWSSMINAFA 424

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
            HG+A ++L+L+ +M    V+PNEVTFVG++Y CSH GLV +G+K+F SM ++Y ITP +
Sbjct: 425 MHGEASDSLSLFAQMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKI 484

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
           +HY C++DL  R+  L EA  +I++MP  P+   W +L+SAC+ H   E+G   A  +L 
Sbjct: 485 EHYGCMVDLFGRANLLREALEVIESMPMAPNVVIWGSLMSACRVHGELELGELAAKRILK 544

Query: 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGET 495
           L+P+   + +L+SN+YA    W +V  +R +M   +V KE G S I+    SH F  G+ 
Sbjct: 545 LEPDHDGALVLMSNIYAREYRWDYVRIIRWIMEKKKVFKEKGLSRIDLNGKSHEFLIGDK 604

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLL-- 553
            H   +EI+  L E+ +++K  GYVPD  SVL D+E++EK+  + WHSE+LA+ +GL+  
Sbjct: 605 RHKQSNEIYTKLYEVVSKLKLAGYVPDGGSVLVDVEEEEKKDLVLWHSEKLALCFGLMNK 664

Query: 554 --KSVPGT--VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
             +   G+  V+R+VKNLRVC DCH   K++S++ + EI+VRD TR+H +KDG CSC D+
Sbjct: 665 EKEEEKGSCGVIRIVKNLRVCEDCHAFFKLVSKVYELEIIVRDRTRFHRYKDGLCSCRDY 724

Query: 610 W 610
           W
Sbjct: 725 W 725



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 194/406 (47%), Gaps = 17/406 (4%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM-PQRDHVSWASILTAYN 80
           +K LHA I++  ++         +        + YA +L   + P  + + + S+L   +
Sbjct: 31  IKQLHAHILRTVINHKLNSFLFNLSFSSSSINLSYALNLFSSISPLPESIVFNSLLRDLS 90

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           ++  P+ TI  +  +  +   + D   F  ++KA   + A   G ++H          D 
Sbjct: 91  RSGEPRATILFYQRIRHVGG-RFDRISFPPILKAVSKVSALFEGMELHGFAFKIATLSDP 149

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V++ L+DMYA CG  N AR VFD +  ++ V+W  M+  Y R G   +A ++FE+    
Sbjct: 150 FVETGLMDMYAACGRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDS 209

Query: 201 NLFLWTALVSGLVQSRNEID------AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
           N+     ++  +V +           A Y F+    E    +D  +L+++V   A    +
Sbjct: 210 NVMPDEMILCNIVSACGRTGNMRYNRAIYDFL---IENDVRMDTHLLTALVTMYAGAGCM 266

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
           ++  +    +        LF+S A+V  Y+K   +  A+ IF +   KD+V WT++I   
Sbjct: 267 DMAMEFFRKMSVRN----LFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAY 322

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
           A+    +E L +++EM  +G+KP+ VT + +I AC ++G + K + + +    + G+   
Sbjct: 323 AESDHPQEALRVFEEMCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLN-GLESV 381

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           L     L+++ ++ G LD A ++ + MP   +  +W+++++A   H
Sbjct: 382 LPIDNALINMYAKCGGLDAARDVFEKMPTR-NVVSWSSMINAFAMH 426


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 223/591 (37%), Positives = 353/591 (59%), Gaps = 33/591 (5%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
             +K +HAQ+   G+     + N L+    K   +  AH L  +M +RD VSW+ ++  +
Sbjct: 17  FQIKQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGF 76

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            +    ++    F  ++     +PD+F    ++KAC       +G+ +H+  + +    D
Sbjct: 77  VKNGDYERCFQTFRELIRAGS-KPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLD 135

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
           + V S+LVDMYAKCG+ +NA+                               ++F++ P 
Sbjct: 136 NFVCSTLVDMYAKCGMIDNAK-------------------------------QLFDRMPK 164

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
           ++L   T +++G  +     +++  F +MRR+G  + D + + +IV ACA    +   + 
Sbjct: 165 KDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGF-VPDKVAMVTIVNACAKLGAMNKARL 223

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           +H  V A  Y   + +  A++DMYAKC  I ++++IF RM +K+V+SW+++I     HGQ
Sbjct: 224 VHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGAYGYHGQ 283

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
             E L L+  M+++G+ PN +TF+ L+YACSH GLV  G +LF  M   YG+ P ++HYT
Sbjct: 284 GREALELFHMMLNSGIIPNRITFISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYT 343

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++DLL R+G LD+A  LI+ M  E DE  W A L AC+ HR  ++  + A  LLSL+ +
Sbjct: 344 CMVDLLGRAGRLDQALRLIENMEVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQTQ 403

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           +P  YILLSN+YA+A  W+ V+K+R LM+   +KK PGY++IE     + F AG+ SH  
Sbjct: 404 NPGHYILLSNIYANAGRWKDVAKIRNLMAKRRLKKIPGYTWIEVDNIIYRFGAGDNSHLR 463

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
            +EI+E+L  L  +++  GYVPDT+SVLHD++++ K   L  HSE+LA+A+GL+ +  GT
Sbjct: 464 SNEIYEMLKSLSQKLESAGYVPDTNSVLHDVDEEVKLGILHAHSEKLAIAFGLIATPDGT 523

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +R+ KNLRVCGDCH   K++S IT+R+I+VRDA R+HHFK+G CSC D+W
Sbjct: 524 PIRITKNLRVCGDCHSFCKLVSAITQRDIIVRDANRFHHFKEGICSCGDYW 574



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 87/169 (51%), Gaps = 8/169 (4%)

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
           +DP    S +  C N   +   KQ+H  V   G    L ++N ++ M AK  D++ A  +
Sbjct: 1   MDPDFFISTLFKCRNIFQI---KQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLL 57

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
           F +M  +D VSW+ +I G  ++G  E     + E++ AG KP+  +   +I AC     +
Sbjct: 58  FNKMEERDPVSWSVMIGGFVKNGDYERCFQTFRELIRAGSKPDNFSLPFVIKACRDTMGL 117

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTC--LLDLLSRSGHLDEAENLIKAMP 402
             GR +  +++++ G+   L ++ C  L+D+ ++ G +D A+ L   MP
Sbjct: 118 IMGRLIHSTVLKN-GL--HLDNFVCSTLVDMYAKCGMIDNAKQLFDRMP 163


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 243/671 (36%), Positives = 370/671 (55%), Gaps = 72/671 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE--EMPQR 67
           LRVC+   +  T + +H  ++K G      +   L+D Y KC  V  A  L +  E  ++
Sbjct: 169 LRVCSSLGLIQTGEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRK 228

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           +HV W +++T Y Q     K +  F  M A   ++ + + F +++ AC S+ A   G+QV
Sbjct: 229 NHVLWTAMVTGYAQNGDGYKAVEFFRYMHA-QGVECNQYTFPTILTACSSVLARCFGEQV 287

Query: 128 HACFVLSPF----------------C--------------DDDVVK-SSLVDMYAKCGLP 156
           H   V S F                C              DDDVV  +SL+  + + GL 
Sbjct: 288 HGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLE 347

Query: 157 NNARAVFDSIKLKN-------------------------------------SVSWTAMLS 179
             A  +F ++  +N                                      +   A++ 
Sbjct: 348 EEALRLFKNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVD 407

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
            YA++G    A  +FE+   +++  WT+LV+G  Q+ +  ++   F +MR  GV+  D  
Sbjct: 408 MYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVN-PDQF 466

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
           +++SI+ ACA   +LE GKQ+H   I  G      + N++V MYAKC  +  A  IF  M
Sbjct: 467 IVASILSACAELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSM 526

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
           + KDV++WT+IIVG AQ+G+   +L  YD MVS+G +P+ +TF+GL++ACSH GLV +GR
Sbjct: 527 QVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGR 586

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           K F+ M + YGI P  +HY C++DL  RSG LDEA+ L+  M  +PD   W +LLSAC+ 
Sbjct: 587 KYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRV 646

Query: 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
           H N E+  R A +L  L+P +   Y++LSN+Y+++  W  V+K+RKLM    + KEPG S
Sbjct: 647 HENLELAERAATNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCS 706

Query: 480 YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL 539
           ++E     + F + +  HP + EI+  + E+   +K  GYVPD S  LHDM+++ KE  L
Sbjct: 707 WLEINSRVNTFISDDRGHPREAEIYTKIDEIILRIKEAGYVPDMSFSLHDMDKEGKEVGL 766

Query: 540 FWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
            +HSE+LAVA+GLL + P   +R+ KNLRVCGDCH  MK ISR+  R I++RD+  +HHF
Sbjct: 767 AYHSEKLAVAFGLLAAPPSAPIRIFKNLRVCGDCHSAMKYISRVFTRHIILRDSNCFHHF 826

Query: 600 KDGKCSCNDFW 610
           ++G+CSC D+W
Sbjct: 827 REGECSCGDYW 837



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 205/449 (45%), Gaps = 73/449 (16%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY-NQANLPQ-------------- 86
           N L++   K   V  A  L ++MPQ+D  SW +++++Y N   L +              
Sbjct: 69  NQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSI 128

Query: 87  ----------------KTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC 130
                           +   +F +M  L+  +   F   S+++ C SLG  + G+ +H  
Sbjct: 129 TWSSIISGYCKFGCKVEAFDLFRSM-RLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGF 187

Query: 131 FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
            V + F  +  V + LVDMYAKC   + A  +F  ++                       
Sbjct: 188 VVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDR-------------------- 227

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
                    +N  LWTA+V+G  Q+ +   A   F  M  +GV+  +     +I+ AC++
Sbjct: 228 ---------KNHVLWTAMVTGYAQNGDGYKAVEFFRYMHAQGVE-CNQYTFPTILTACSS 277

Query: 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
                 G+Q+HG ++  G+ S +++ +A+VDMYAKC D+  AK++   M   DVVSW S+
Sbjct: 278 VLARCFGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSL 337

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK---LFKSMIE 367
           +VG  +HG  EE L L+  M    +K ++ TF  ++  C  VG +        + K+  E
Sbjct: 338 MVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFPSVLNCCV-VGSINPKSVHGLIIKTGFE 396

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
           +Y +  +      L+D+ +++G +D A  + + M  E D  +W +L++    + + E   
Sbjct: 397 NYKLVSN-----ALVDMYAKTGDMDCAYTVFEKM-LEKDVISWTSLVTGYAQNNSHEESL 450

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAM 456
           ++    + +   +P  +I+ S + A A +
Sbjct: 451 KIFCD-MRVTGVNPDQFIVASILSACAEL 478


>gi|357516765|ref|XP_003628671.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
 gi|355522693|gb|AET03147.1| hypothetical protein MTR_8g063290 [Medicago truncatula]
          Length = 659

 Score =  450 bits (1158), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 235/627 (37%), Positives = 353/627 (56%), Gaps = 40/627 (6%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           T+K LH  I  L  HQ   L   L+ +Y  C        + +EM  R+ V +  ++ +Y 
Sbjct: 36  TLKKLHTMIFYLNSHQNPSLGIKLMRSYAACGEPGLTRKVFDEMSDRNVVFYNVMIRSYV 95

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
             +     + +F  M+     +PD++ +  ++KAC      R G  +H   +      + 
Sbjct: 96  NNHRYDDGLLVFREMVN-GGFRPDNYTYPCVLKACSCSENLRYGLLIHGDVLKVGLDFNL 154

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI------F 194
            V + L+ MY KCG    AR VFD +  K+ VSW +M++ YA + R  DA+EI      +
Sbjct: 155 FVGNGLIAMYGKCGCLFEARRVFDEMIWKDVVSWNSMVAGYAHNMRFDDALEICREMEDY 214

Query: 195 EQAP-------------------------------VRNLFLWTALVSGLVQSRNEIDAFY 223
            Q P                                +NL  W  ++   +++     A  
Sbjct: 215 GQKPDGCTMASLMPAVANTSSENVLYVEKIFVNLERKNLISWNVMIRVYMKNSLPTQAVD 274

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            +++M +  V+  D +  +S++ AC + + L LG++IH  V        L + N+++DMY
Sbjct: 275 LYLQMEKCRVE-PDAITFASVLPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMY 333

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           A+C  +  AK +F RM+ +DV SWTS+I      GQ    +AL+ EM+++G  P+ + FV
Sbjct: 334 ARCGCLDDAKRVFDRMKFRDVASWTSLISAYGMTGQGCNAVALFTEMLNSGQAPDSIAFV 393

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            ++ ACSH GL+ +GR  FK M +DY ITP ++HY CL+DLL R+G +DEA N+IK MP 
Sbjct: 394 AILSACSHSGLLDEGRIYFKQMTDDYRITPRIEHYACLVDLLGRAGRVDEAYNIIKQMPI 453

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
           EP+E  WA LLS+C+   N ++G   A++LL L PE    Y+LLSN+YA A  W+ V+++
Sbjct: 454 EPNERVWATLLSSCRVFTNMDIGILAADNLLQLAPEQSGYYVLLSNIYAKAGRWKEVTEI 513

Query: 464 RKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDT 523
           R +M   +++K PG S +E     H F AG+TSHP   EI+E L  L A+MK  GYVP+T
Sbjct: 514 RSVMKRKKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELGVLVAKMKELGYVPET 573

Query: 524 SSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRI 583
            S LHD+E+++KE  L  HSE+LA+ + LL +    + R+ KNLRVCGDCHI  K+IS+I
Sbjct: 574 DSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQEYQI-RITKNLRVCGDCHIAAKLISKI 632

Query: 584 TKREIVVRDATRYHHFKDGKCSCNDFW 610
            +REI+VRD  R+HHFKDG CSC D+W
Sbjct: 633 VEREIIVRDTNRFHHFKDGVCSCGDYW 659



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 9/176 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C      L  + +H  + K  L     L N+LID Y +C  +  A  + + M  RD 
Sbjct: 295 LPACGDLSALLLGRRIHEYVEKKKLCPNLLLENSLIDMYARCGCLDDAKRVFDRMKFRDV 354

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
            SW S+++AY         +++F+ ML   +  PD   F +++ AC   G    G    K
Sbjct: 355 ASWTSLISAYGMTGQGCNAVALFTEMLNSGQ-APDSIAFVAILSACSHSGLLDEGRIYFK 413

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
           Q+   + ++P  +     + LVD+  + G  + A  +   + ++ N   W  +LS+
Sbjct: 414 QMTDDYRITPRIEH---YACLVDLLGRAGRVDEAYNIIKQMPIEPNERVWATLLSS 466


>gi|225434622|ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 743

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/592 (37%), Positives = 344/592 (58%), Gaps = 2/592 (0%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
            T K  H  +IK+ L     + N+LI  Y KC  +   + +   +P+RD VSW S++TA+
Sbjct: 153 FTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAF 212

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            Q   P++ + +F  M     ++P+      ++ AC        G+ VH+    +   + 
Sbjct: 213 VQGGCPEEALELFQEM-ETQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIGES 271

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             + ++++DMY KCG   +A+ +FD +  K+ VSWT ML  YA+ G    A  IF+  P 
Sbjct: 272 LTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGIFDAMPN 331

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
           +++  W AL+S   Q     +A   F E++       D + L S + ACA    ++LG  
Sbjct: 332 QDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTLSACAQLGAMDLGGW 391

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           IH  +   G +    ++ +++DMY KC D+  A  +F  + RKDV  W+++I G A HG 
Sbjct: 392 IHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWSAMIAGLAMHGH 451

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
            ++ +AL+ +M    VKPN VTF  ++ ACSHVGLV +GR  F  M   YG+ P ++HY 
Sbjct: 452 GKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYA 511

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++D+L R+G L+EA  LI+ MP  P    W ALL AC  H N  +  +  + L+ L+P 
Sbjct: 512 CMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPG 571

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           +  +Y+LLSN+YA A  W  VS +RKLM  + +KKEPG S IE     H F  G+ SHP 
Sbjct: 572 NHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEVDGIVHEFLVGDNSHPS 631

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE-KERQLFWHSERLAVAYGLLKSVPG 558
             +I+  L E+ A ++  GYVP+ S +L  +E+++ KE+ LF HSE+LA+A+GL+ +   
Sbjct: 632 AKKIYAKLDEIVARLETIGYVPNKSHLLQLVEEEDVKEQALFLHSEKLAIAFGLISTGQS 691

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             +R+VKNLRVCGDCH V K++S++  REI++RD  R+HHF++G CSC D+W
Sbjct: 692 QPIRIVKNLRVCGDCHSVAKLVSKLYDREILLRDRYRFHHFREGHCSCMDYW 743



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 198/434 (45%), Gaps = 70/434 (16%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNT-LIDAYGKCDL--VQYAHHLLEEMPQRDHVSWASILTA 78
           +K +HAQ+++ GL  + P   + LI A        + YA  + +++P  +  +W +++ A
Sbjct: 51  LKQIHAQMLRTGLF-FDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRA 109

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
           Y  ++ P +++ IF  ML      PD F F  L+KA   L     GK  H   +      
Sbjct: 110 YASSSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFTGKAFHGMVIKVLLGS 169

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  + +SL+  YAKCG       VF +I  ++ VSW +M++A+ + G  ++A+E+F++  
Sbjct: 170 DVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWNSMITAFVQGGCPEEALELFQEME 229

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            +N+                          +  G+ +V       ++ ACA  +  E G+
Sbjct: 230 TQNV--------------------------KPNGITMV------GVLSACAKKSDFEFGR 257

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA--- 315
            +H  +        L +SNA++DMY KC  +  AK +F +M  KD+VSWT+++VG A   
Sbjct: 258 WVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIG 317

Query: 316 ----------------------------QHGQAEETLALYDEM-VSAGVKPNEVTFVGLI 346
                                       Q G+ +E L L+ E+ +S   KP+EVT V  +
Sbjct: 318 EYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVSTL 377

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            AC+ +G +  G       I+  G+  +    T L+D+  + G L +A  +  ++    D
Sbjct: 378 SACAQLGAMDLG-GWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVE-RKD 435

Query: 407 EPTWAALLSACKHH 420
              W+A+++    H
Sbjct: 436 VFVWSAMIAGLAMH 449



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 97/218 (44%), Gaps = 31/218 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA+       + +H+ I +  + +   L N ++D Y KC  V+ A  L ++MP++D 
Sbjct: 244 LSACAKKSDFEFGRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDI 303

Query: 70  VSWASIL-------------------------------TAYNQANLPQKTISIFSTMLAL 98
           VSW ++L                               +AY Q   P++ + +F  +   
Sbjct: 304 VSWTTMLVGYAKIGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLS 363

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
              +PD     S + AC  LGA  LG  +H          +  + +SL+DMY KCG    
Sbjct: 364 KTAKPDEVTLVSTLSACAQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQK 423

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           A  VF S++ K+   W+AM++  A  G  KDA+ +F +
Sbjct: 424 ALMVFHSVERKDVFVWSAMIAGLAMHGHGKDAIALFSK 461


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/588 (39%), Positives = 349/588 (59%), Gaps = 34/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   IK        +   LIDAY +   ++ A  L       D V+W ++++ Y Q+
Sbjct: 444 KQIHVHAIKTNNVADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQS 502

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           +   KT+ +F+ M    + + D F  A+++K CG L A   GKQVHA  + S +  D  V
Sbjct: 503 HDGHKTLELFALMHKQGE-RSDDFTLATVLKTCGFLFAINQGKQVHAYAIKSGYDLDLWV 561

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            S ++DMY KCG  + A+  FDSI                               PV + 
Sbjct: 562 SSGILDMYVKCGDMSAAQFAFDSI-------------------------------PVPDD 590

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WT L+SG +++  E  A + F +MR  GV + D   ++++  A +    LE G+QIH 
Sbjct: 591 VAWTTLISGCIENGEEERALHVFSQMRLMGV-LPDEFTIATLAKASSCLTALEQGRQIHA 649

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             + L   S  F+  ++VDMYAKC  I  A  +F R+   ++ +W +++VG AQHG+ +E
Sbjct: 650 NALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKE 709

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L+ +M S G+KP++VTF+G++ ACSH GLV +  K  +SM  DYGI P ++HY+CL 
Sbjct: 710 ALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCLA 769

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D L R+G + EAENLI +M  E     +  LL+AC+   +TE G RVA  LL L+P D S
Sbjct: 770 DALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSS 829

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y+LLSN+YA+A+ W  +   R +M   +VKK+PG+S+IE     H+F   + S+P  + 
Sbjct: 830 AYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHLFVVDDRSNPQTEL 889

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I++ + ++  ++K+ GYVP+T   L D+E++EKER L++HSE+LAVA+GLL + P T +R
Sbjct: 890 IYKKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIR 949

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V+KNLRVCGDCH  MK IS++  REIV+RDA R+H FKDG CSC D+W
Sbjct: 950 VIKNLRVCGDCHNAMKYISKVYDREIVLRDANRFHRFKDGICSCGDYW 997



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 118/456 (25%), Positives = 212/456 (46%), Gaps = 39/456 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H   +KLGL     + N+LI+ Y K   +  A  +   M +RD +SW S++    Q+
Sbjct: 342 QQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQS 401

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSL-GATRLGKQVHACFVLSPFCDDDV 141
           +L  + + +F  +L    L+PDH+   S++KA  SL     L KQ+H   + +    D  
Sbjct: 402 DLEVEAVCLFMQLLRCG-LKPDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNVADSF 460

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V ++L+D Y++      A  +F      + V+W AM+S Y +S      +E+F       
Sbjct: 461 VSTALIDAYSRNRCMKEAEVLFGRNNF-DLVAWNAMMSGYTQSHDGHKTLELF------- 512

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                AL                   M ++G +  D   L++++  C     +  GKQ+H
Sbjct: 513 -----AL-------------------MHKQG-ERSDDFTLATVLKTCGFLFAINQGKQVH 547

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
              I  GY+  L++S+ I+DMY KC D+ AA+  F  +   D V+WT++I G  ++G+ E
Sbjct: 548 AYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTLISGCIENGEEE 607

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
             L ++ +M   GV P+E T   L  A S +  + +GR++  + ++    T      T L
Sbjct: 608 RALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALK-LNCTSDPFVGTSL 666

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL--LSLKPE 439
           +D+ ++ G +D+A  L K +    +   W A+L     H   +   ++   +  L +KP+
Sbjct: 667 VDMYAKCGSIDDAYCLFKRIEM-MNITAWNAMLVGLAQHGEGKEALQLFKQMESLGIKPD 725

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKE 475
             +   +LS    S  + +    +R +     +K E
Sbjct: 726 KVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPE 761



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 113/440 (25%), Positives = 191/440 (43%), Gaps = 53/440 (12%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K  HA+I+ L  +    L N LI  Y KC  + YA  + ++MP+RD VSW SIL AY Q+
Sbjct: 66  KCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQS 125

Query: 83  NL----PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
           +       K   +   +L  D +       + ++K C   G     +  H          
Sbjct: 126 SEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDG 185

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI----- 193
           DD V  +LV++Y K G     R +F+ +  ++ V W  ML AY   G K++A+++     
Sbjct: 186 DDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFH 245

Query: 194 -----------------------------FEQ----APVRNLFLWTALVSGLVQSRNEID 220
                                        FE     + V  +     ++SG + +     
Sbjct: 246 TSGLHPNEITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLHAGQYSA 305

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
               F++M    ++  D +    ++        L LG+Q+H + + LG +  L +SN+++
Sbjct: 306 LLKCFMDMVESDLE-CDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTVSNSLI 364

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           +MY K   I  A+ +F  M  +D++SW S+I G AQ     E + L+ +++  G+KP+  
Sbjct: 365 NMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHY 424

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSM----IEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
           T   ++ A S    + +G  L K +    I+   +  S    T L+D  SR+  + EAE 
Sbjct: 425 TMTSVLKAASS---LPEGLSLSKQIHVHAIKTNNVADSFVS-TALIDAYSRNRCMKEAEV 480

Query: 397 LIKAMPFEPDEPTWAALLSA 416
           L     F  D   W A++S 
Sbjct: 481 LFGRNNF--DLVAWNAMMSG 498



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 106/472 (22%), Positives = 200/472 (42%), Gaps = 46/472 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L++C         ++ H    K+GL     +   L++ Y K   V+    L EEMP RD 
Sbjct: 159 LKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDV 218

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG---------- 119
           V W  +L AY +    ++ I + S+      L P+      L +  G             
Sbjct: 219 VLWNLMLKAYLEMGFKEEAIDL-SSAFHTSGLHPNEITLRLLSRISGDDSEAGQVKSFEN 277

Query: 120 ---ATRLGKQVHACFVLSPF-----------CDDDVVKSSLVDMYAKCGLPNNARAVFDS 165
              A+ + + +    +LS +           C  D+V+S L        L        DS
Sbjct: 278 GNDASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDS 337

Query: 166 IKLKNSVSWTA--------------MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSG 211
           + L   V   A              +++ Y +  +   A  +F     R+L  W ++++G
Sbjct: 338 LALGQQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAG 397

Query: 212 LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV-LELGKQIHGLVIALGYE 270
           + QS  E++A   F+++ R G+   D   ++S++ A ++    L L KQIH   I     
Sbjct: 398 IAQSDLEVEAVCLFMQLLRCGLK-PDHYTMTSVLKAASSLPEGLSLSKQIHVHAIKTNNV 456

Query: 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEM 330
           +  F+S A++D Y++   +  A+ +FGR    D+V+W +++ G  Q     +TL L+  M
Sbjct: 457 ADSFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALM 515

Query: 331 VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH 390
              G + ++ T   ++  C  +  + +G+++    I+  G    L   + +LD+  + G 
Sbjct: 516 HKQGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKS-GYDLDLWVSSGILDMYVKCGD 574

Query: 391 LDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH--LLSLKPED 440
           +  A+    ++P  PD+  W  L+S C  +   E    V +   L+ + P++
Sbjct: 575 MSAAQFAFDSIPV-PDDVAWTTLISGCIENGEEERALHVFSQMRLMGVLPDE 625



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 102/220 (46%), Gaps = 27/220 (12%)

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           LGK  HA  +      +  + ++L+ MY+KCG    AR VFD +  ++ VSW ++L+AYA
Sbjct: 64  LGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYA 123

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           +S                          G+V++  E  AF  F  + R+ V     + LS
Sbjct: 124 QSSE------------------------GVVENVKE--AFLLF-RILRQDVVYTSRMTLS 156

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            ++  C +   +   +  HG    +G +   F++ A+V++Y K   +   + +F  M  +
Sbjct: 157 PMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR 216

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           DVV W  ++    + G  EE + L     ++G+ PNE+T 
Sbjct: 217 DVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNEITL 256



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 74/168 (44%), Gaps = 7/168 (4%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L LGK  H  ++AL      F+ N ++ MY+KC  +  A+ +F +M  +D+VSW SI+  
Sbjct: 62  LMLGKCTHARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAA 121

Query: 314 TAQHGQA-----EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            AQ  +      +E   L+  +    V  + +T   ++  C H G V      F      
Sbjct: 122 YAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASES-FHGYACK 180

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G+         L+++  + G + E   L + MP+  D   W  +L A
Sbjct: 181 IGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYR-DVVLWNLMLKA 227


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 224/571 (39%), Positives = 345/571 (60%), Gaps = 38/571 (6%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L N LI+ Y K  L+  A  + ++MP R+ VSW ++++AY+ A L  K +     ML  +
Sbjct: 2   LINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLR-E 60

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            ++P+ F ++S+++AC  L   R   Q+H C +      D  V+S+L+D+Y+        
Sbjct: 61  GVRPNMFTYSSVLRACDGLFNLR---QLHCCIIKIGLDSDVFVRSALIDVYS-------- 109

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
                                  R G  ++A+ +F++    +L +W+++++G  Q+ +  
Sbjct: 110 -----------------------RWGELENALRVFDEMVTGDLVVWSSIIAGFAQNSDGD 146

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           +A   F  M+R G  +     L+S++ AC   A+LELG+Q+H  V  L Y+  L ++NA+
Sbjct: 147 EALRLFKRMKRAGF-LAQQTTLTSVLRACTGLALLELGRQVH--VHVLKYDQDLILNNAL 203

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           +DMY KC  +  A  +F RM  KDV+SW+++I G AQ+G ++E L L++ M   G+KPN 
Sbjct: 204 LDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNY 263

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           VT VG+++ACSH GLV +G   F SM E +GI P  +HY C++DLL R+G L EA +LI 
Sbjct: 264 VTIVGVLFACSHAGLVEEGLYYFHSMKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLIN 323

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
            M  EPD  TW ALL+AC+ HRN ++    A  +L L P+D  +Y+LLSN+YA+   W  
Sbjct: 324 EMECEPDAVTWRALLNACRVHRNVDVAIHAAKQILRLDPQDAGTYVLLSNIYANTQRWND 383

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
           V++VR+ M+   +KKEPG S+IE  K  H F  G+ SHP   EI   L +L  ++   GY
Sbjct: 384 VAEVRRTMTNRGIKKEPGCSWIEVSKQIHAFILGDRSHPQIREINIQLNQLIYKLMGVGY 443

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
           VPDT+ VL D+E ++ +  L +HSE+LA+ +GL+    G  +R+ KNLR+CGDCH+  K+
Sbjct: 444 VPDTNFVLQDLEGEQMQDSLRYHSEKLAIVFGLMSLPRGQTIRIRKNLRICGDCHLFTKL 503

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++++ +R IV+RD  RYHHF+DG CSC DFW
Sbjct: 504 LAKMEQRIIVIRDPVRYHHFQDGLCSCGDFW 534



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 96/180 (53%), Gaps = 3/180 (1%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
             ++ LH  IIK+GL     + + LID Y +   ++ A  + +EM   D V W+SI+  +
Sbjct: 80  FNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSIIAGF 139

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            Q +   + + +F  M     L        S+++AC  L    LG+QVH   +   +  D
Sbjct: 140 AQNSDGDEALRLFKRMKRAGFL-AQQTTLTSVLRACTGLALLELGRQVHVHVL--KYDQD 196

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
            ++ ++L+DMY KCG   +A AVF  +  K+ +SW+ M++  A++G  K+A+++FE   V
Sbjct: 197 LILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALKLFESMKV 256



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 80/156 (51%), Gaps = 5/156 (3%)

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
           F+ N +++MY K   +  A+D+F +M  ++VVSWT++I   +     ++ L     M+  
Sbjct: 1   FLINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLRE 60

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
           GV+PN  T+  ++ AC   GL    R+L   +I+  G+   +   + L+D+ SR G L+ 
Sbjct: 61  GVRPNMFTYSSVLRACD--GLFNL-RQLHCCIIK-IGLDSDVFVRSALIDVYSRWGELEN 116

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           A  +   M    D   W+++++    + + +   R+
Sbjct: 117 ALRVFDEM-VTGDLVVWSSIIAGFAQNSDGDEALRL 151



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 83/176 (47%), Gaps = 11/176 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C    +    + +H  ++K    Q   L N L+D Y KC  ++ A+ +   M ++D 
Sbjct: 171 LRACTGLALLELGRQVHVHVLKY--DQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDV 228

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
           +SW++++    Q    ++ + +F +M  L  ++P++     ++ AC   G    G     
Sbjct: 229 ISWSTMIAGLAQNGYSKEALKLFESMKVL-GIKPNYVTIVGVLFACSHAGLVEEGLYYFH 287

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
            +   F + P  +       ++D+  + G  + A  + + ++ + ++V+W A+L+A
Sbjct: 288 SMKELFGIDPGREH---YGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNA 340


>gi|302768267|ref|XP_002967553.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
 gi|300164291|gb|EFJ30900.1| hypothetical protein SELMODRAFT_88824 [Selaginella moellendorffii]
          Length = 670

 Score =  450 bits (1157), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 244/610 (40%), Positives = 358/610 (58%), Gaps = 7/610 (1%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP--LPNTLIDAYGKCDLVQYAHHLLEE 63
           Y   +R C         + LH+ I+ L      P  L N LI+ YGKC  + YA  L E 
Sbjct: 63  YAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYARELFES 122

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           MP R+  +W   + A++      + +  F  M    + +PD   F+ ++ A   +GA  +
Sbjct: 123 MPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGE-RPDRVTFSVILAAIAQMGAAAI 181

Query: 124 --GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
             G+++H    +S    + VV ++++ MY KCG  ++ARA F+ ++ KNSV+W AM++ Y
Sbjct: 182 DQGREIHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNY 241

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
              GR ++A+E+F +    +   W A+++   Q      A   +  M             
Sbjct: 242 KLDGRDREALELFREMHDADSVCWNAMIAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTF 301

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
            +++  CA  + L+ G+ IH  V A  +++ L +SNA+V MY KC  +  A D+F  M+ 
Sbjct: 302 VTVIDVCAELSALKQGRAIHARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKL 361

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           KD +SW +II   A HG +++ L LY EM   GVKP EVTFVGL+ ACSH GLV  G   
Sbjct: 362 KDEISWNTIISSYAYHGHSDQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDY 421

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F  M +D+ I PS+ H+ C++DLL R G L EAE ++K+MP + +   W +LL ACK H 
Sbjct: 422 FYRMQDDHRIKPSVPHFGCIIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHG 481

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           + + G R A+ ++   P     Y+LLSN+YA+A  W+ V K+RK+M+   VKK PG S+I
Sbjct: 482 DLKRGVRAADQVVDRVPWTSGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWI 541

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E G   H F +G++SHP  +EI+  L ++  EMK  GYVPDTSSV HD+E++EKE  L  
Sbjct: 542 EIGDVVHEFVSGDSSHPQGEEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVC 601

Query: 542 HSERLAVAYGLLKSVPG-TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFK 600
           HSE+LA+ YG +  VPG ++LR+VKNLRVC DCH   K +SRIT R+IVVRDA R+H F+
Sbjct: 602 HSEKLAIVYGNM-VVPGKSMLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFE 660

Query: 601 DGKCSCNDFW 610
           +G CSC D+W
Sbjct: 661 NGSCSCRDYW 670



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/187 (21%), Positives = 97/187 (51%), Gaps = 6/187 (3%)

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL--FISNAIVDMYAKCSDIIAAK 293
           +DP+  ++++  C     +   +++H  +++L + +    F++N +++MY KC  +  A+
Sbjct: 58  LDPVGYAALIRRCGAANAISAARRLHSHILSLPHSNSQPPFLANLLIEMYGKCGRLPYAR 117

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI--YACSH 351
           ++F  M  ++V +WT  +   + +G   E L  +  M  +G +P+ VTF  ++   A   
Sbjct: 118 ELFESMPSRNVHTWTVAMAAFSHNGCHSEALVFFRRMYQSGERPDRVTFSVILAAIAQMG 177

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
              + +GR++ +      G+ P++   T ++ +  + G LD+A    + + ++ +  TW 
Sbjct: 178 AAAIDQGREIHR-YARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWK-NSVTWN 235

Query: 412 ALLSACK 418
           A+++  K
Sbjct: 236 AMMTNYK 242


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  449 bits (1156), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/594 (38%), Positives = 351/594 (59%), Gaps = 10/594 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNT---LIDAYGKCDLVQYAHHLLE--EMPQRDHVSWASIL 76
           ++ +HAQIIK        LP T   L+ A+       YA  + +  E  + +   W S L
Sbjct: 44  LRQVHAQIIKTNA-PLSILPLTRVGLVCAFTPS--FHYAQQIFKCVEKQKPETFVWNSCL 100

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
            A  + + P   I +F  +   D + PD F  +S+++AC +L     G+ +H       F
Sbjct: 101 KALAEGDSPIDAIMLFYRLRQYD-VCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGF 159

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             +  +++ +V +YA CG    AR +F+ +  ++ V+W  M++   + G  + A ++F +
Sbjct: 160 RSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSR 219

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
            P RN+  WT++++G VQ     +A + F +M   GV   + + + +++ ACA+   L+L
Sbjct: 220 MPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVK-CNEVTVVAVLAACADLGALDL 278

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           G +IH      G++  + ISN ++DMY KC  +  A  +F  M  + VVSW+++I G A 
Sbjct: 279 GMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAM 338

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           HG+AEE L L+ +M   G++PN VTF+GL++ACSH+GL+ +GR+ F SM  DYGI P ++
Sbjct: 339 HGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIE 398

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
           HY C++DLLSR+G L EA   I  MP +P+   W ALL AC+ H+N EM      HLL L
Sbjct: 399 HYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLEL 458

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETS 496
            P +   Y++LSN+YA A  W+  ++VRK M   +VKK PG+S I      H F AGE S
Sbjct: 459 DPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEES 518

Query: 497 HPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSV 556
           HP  ++IF+   EL  EM+ +GYVP+TS VL D+E+ EK + +  HSE+LA+ +GL+ + 
Sbjct: 519 HPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTP 578

Query: 557 PGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             T +R++KNLR+C DCH   K+IS I  REIVVRD  R+H F D  CSC D+W
Sbjct: 579 AETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 632



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 32/216 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C         + LH  + K+G      L N ++  Y  C  +  A  L E+MPQRD 
Sbjct: 135 LRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDV 194

Query: 70  V-------------------------------SWASILTAYNQANLPQKTISIFSTMLAL 98
           V                               SW S++  Y Q    ++ I +F+ M   
Sbjct: 195 VTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEA 254

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
             ++ +     +++ AC  LGA  LG ++H       F  +  + ++L+DMY KCG    
Sbjct: 255 G-VKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEE 313

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
           A  VF+ ++ +  VSW+AM+   A  GR ++A+ +F
Sbjct: 314 ACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLF 349


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 234/588 (39%), Positives = 350/588 (59%), Gaps = 34/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   IK+       +   LIDAY +   ++ A  L E     D V+W +++  Y Q+
Sbjct: 437 KQVHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQS 495

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           +   KT+ +F+ M    + + D F  A++ K CG L A   GKQVHA  + S +  D  V
Sbjct: 496 HDGHKTLKLFALMHKQGE-RSDDFTLATVFKTCGFLFAINQGKQVHAYAIKSGYDLDLWV 554

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            S ++DMY KCG  + A+  FDSI                               PV + 
Sbjct: 555 SSGILDMYVKCGDMSAAQFAFDSI-------------------------------PVPDD 583

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WT ++SG +++  E  AF+ F +MR  GV + D   ++++  A +    LE G+QIH 
Sbjct: 584 VAWTTMISGCIENGEEERAFHVFSQMRLMGV-LPDEFTIATLAKASSCLTALEQGRQIHA 642

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             + L   +  F+  ++VDMYAKC  I  A  +F R+   ++ +W +++VG AQHG+ +E
Sbjct: 643 NALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGKE 702

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
           TL L+ +M S G+KP++VTF+G++ ACSH GLV +  K  +SM  DYGI P ++HY+CL 
Sbjct: 703 TLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEHYSCLA 762

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D L R+G + +AENLI++M  E     +  LL+AC+   +TE G RVA  LL L+P D S
Sbjct: 763 DALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDSS 822

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y+LLSN+YA+A+ W  +   R +M   +VKK+PG+S+IE     HIF   + S+   + 
Sbjct: 823 AYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTEL 882

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  + ++  ++K+ GYVP+T   L D+E++EKER L++HSE+LAVA+GLL + P T +R
Sbjct: 883 IYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIR 942

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V+KNLRVCGDCH  MK I+++  REIV+RDA R+H FKDG CSC D+W
Sbjct: 943 VIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGDYW 990



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 119/459 (25%), Positives = 210/459 (45%), Gaps = 45/459 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H   +KLGL     + N+LI+ Y K     +A  + + M +RD +SW S++    Q 
Sbjct: 335 QQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQN 394

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSL-GATRLGKQVHACFVLSPFCDDDV 141
            L  + + +F  +L    L+PD +   S++KA  SL     L KQVH             
Sbjct: 395 GLEVEAVCLFMQLLRCG-LKPDQYTMTSVLKAASSLPEGLSLSKQVHV------------ 441

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKN---SVSWTAMLSAYARSGRKKDAMEIFEQAP 198
                                  +IK+ N   S   TA++ AY+R+   K+A  +FE+  
Sbjct: 442 ----------------------HAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERHN 479

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
             +L  W A+++G  QS +       F  M ++G +  D   L+++   C     +  GK
Sbjct: 480 F-DLVAWNAMMAGYTQSHDGHKTLKLFALMHKQG-ERSDDFTLATVFKTCGFLFAINQGK 537

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           Q+H   I  GY+  L++S+ I+DMY KC D+ AA+  F  +   D V+WT++I G  ++G
Sbjct: 538 QVHAYAIKSGYDLDLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDDVAWTTMISGCIENG 597

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
           + E    ++ +M   GV P+E T   L  A S +  + +GR++  + ++    T      
Sbjct: 598 EEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQGRQIHANALK-LNCTNDPFVG 656

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL--LSL 436
           T L+D+ ++ G +D+A  L K +    +   W A+L     H   +   ++   +  L +
Sbjct: 657 TSLVDMYAKCGSIDDAYCLFKRIEM-MNITAWNAMLVGLAQHGEGKETLQLFKQMKSLGI 715

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKE 475
           KP+  +   +LS    S  + +    +R +     +K E
Sbjct: 716 KPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPE 754



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 115/440 (26%), Positives = 198/440 (45%), Gaps = 53/440 (12%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K  HA+I+    +    L N LI  Y KC  + YA  + ++MP RD VSW SIL AY Q+
Sbjct: 59  KCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQS 118

Query: 83  NL-----PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
           +       Q+   +F  +L  D +       + ++K C   G     +  H         
Sbjct: 119 SECVVENIQQAFLLFR-ILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLD 177

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI---F 194
            D+ V  +LV++Y K G     + +F+ +  ++ V W  ML AY   G K++A+++   F
Sbjct: 178 GDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAF 237

Query: 195 EQA---PVRNLFLWTALVSGLVQSRNEIDAF--------YSFIEMRREGV---------- 233
             +   P        A +SG      ++ +F         S I  R +G+          
Sbjct: 238 HSSGLNPNEITLRLLARISGDDSDAGQVKSFANGNDASSVSEIIFRNKGLSEYLHSGQYS 297

Query: 234 -------DIV------DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
                  D+V      D +    ++        L LG+Q+H + + LG +  L +SN+++
Sbjct: 298 ALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLGLDLMLTVSNSLI 357

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           +MY K      A+ +F  M  +D++SW S+I G AQ+G   E + L+ +++  G+KP++ 
Sbjct: 358 NMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQY 417

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSM----IEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
           T   ++ A S    + +G  L K +    I+   ++ S    T L+D  SR+  + EAE 
Sbjct: 418 TMTSVLKAASS---LPEGLSLSKQVHVHAIKINNVSDSFVS-TALIDAYSRNRCMKEAEI 473

Query: 397 LIKAMPFEPDEPTWAALLSA 416
           L +   F  D   W A+++ 
Sbjct: 474 LFERHNF--DLVAWNAMMAG 491



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 102/473 (21%), Positives = 203/473 (42%), Gaps = 48/473 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L++C         ++ H    K+GL     +   L++ Y K   V+    L EEMP RD 
Sbjct: 152 LKLCLHSGYVWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDV 211

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG---SLGATR---- 122
           V W  +L AY +    ++ I + S+      L P+      L +  G     G  +    
Sbjct: 212 VLWNLMLKAYLEMGFKEEAIDL-SSAFHSSGLNPNEITLRLLARISGDDSDAGQVKSFAN 270

Query: 123 ----------------LGKQVHA--------CFVLSPFCDDDVVKSSLVDMYAKC----- 153
                           L + +H+        CF      D +  + + + M A       
Sbjct: 271 GNDASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDS 330

Query: 154 ---GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVS 210
              G   +  A+   + L  +VS  ++++ Y +  +   A  +F+    R+L  W ++++
Sbjct: 331 LALGQQVHCMALKLGLDLMLTVS-NSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIA 389

Query: 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV-LELGKQIHGLVIALGY 269
           G+ Q+  E++A   F+++ R G+   D   ++S++ A ++    L L KQ+H   I +  
Sbjct: 390 GIAQNGLEVEAVCLFMQLLRCGLK-PDQYTMTSVLKAASSLPEGLSLSKQVHVHAIKINN 448

Query: 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDE 329
            S  F+S A++D Y++   +  A+ +F R    D+V+W +++ G  Q     +TL L+  
Sbjct: 449 VSDSFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFAL 507

Query: 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389
           M   G + ++ T   +   C  +  + +G+++    I+  G    L   + +LD+  + G
Sbjct: 508 MHKQGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKS-GYDLDLWVSSGILDMYVKCG 566

Query: 390 HLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH--LLSLKPED 440
            +  A+    ++P  PD+  W  ++S C  +   E    V +   L+ + P++
Sbjct: 567 DMSAAQFAFDSIPV-PDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDE 618



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 73/168 (43%), Gaps = 7/168 (4%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L LGK  H  ++        F+ N ++ MY+KC  +  A+ +F +M  +D+VSW SI+  
Sbjct: 55  LMLGKCTHARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAA 114

Query: 314 TAQHGQA-----EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            AQ  +      ++   L+  +    V  + +T   ++  C H G V      F      
Sbjct: 115 YAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASES-FHGYACK 173

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G+         L+++  + G + E + L + MP+  D   W  +L A
Sbjct: 174 IGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYR-DVVLWNLMLKA 220


>gi|125537719|gb|EAY84114.1| hypothetical protein OsI_05496 [Oryza sativa Indica Group]
          Length = 751

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/569 (40%), Positives = 334/569 (58%), Gaps = 33/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NTLI    +C +++ A  L + M  RD ++W +++T   Q  L  + + +F  M A + +
Sbjct: 216 NTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRA-EGV 274

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             D + F S++ ACG+L A+  GKQ+HA    + + D+  V S+LVDMY+KC        
Sbjct: 275 GIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVDMYSKC-------- 326

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
              SI+L  +V                     F +   RN+  WTA++ G  Q+    +A
Sbjct: 327 --RSIRLAEAV---------------------FRRMTCRNIISWTAMIVGYGQNACSEEA 363

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
             +F EM+ +G+   D   L S++ +CAN A LE G Q H L +  G    + +SNA+V 
Sbjct: 364 VRAFSEMQMDGIK-PDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVT 422

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           +Y KC  I  A  +F  M   D VSWT+++ G AQ G+A+ET+ L+++M+  G+KP+ VT
Sbjct: 423 LYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLVNGLKPDGVT 482

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+G++ ACS  GLV KG   F SM +D+ I P   HYTC++DL SRSG   EAE  IK M
Sbjct: 483 FIGVLSACSRAGLVEKGCDYFDSMQKDHDIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQM 542

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P  PD   WA LLS+C+   N E+G   A +LL   P++P+SY+LL +++A+   W  V+
Sbjct: 543 PHSPDAFGWATLLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVA 602

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
            +R+ M   +VKKEPG S+I++    HIF A + SHP    I+E L  L+++M   GY P
Sbjct: 603 HLRRGMRDRQVKKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKP 662

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           D SSVLHD+   +K   +  HSE+LA+A+GL+       +R+VKNLRVC DCH   K IS
Sbjct: 663 DVSSVLHDVADADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRVCVDCHNATKFIS 722

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +IT R+I+VRDA R+H F DG CSC DFW
Sbjct: 723 KITGRDILVRDAVRFHKFSDGTCSCGDFW 751



 Score =  208 bits (529), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 116/375 (30%), Positives = 198/375 (52%), Gaps = 3/375 (0%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+ A     LV     L   MP+RD VS+ +++T ++    P +++ ++  +L  + +
Sbjct: 83  NALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESV 142

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +P     ++++    +L    LG  VH   +   F     V S LVDMYAK GL  +AR 
Sbjct: 143 RPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARR 202

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF  ++ K  V +  +++   R    +DA  +F+    R+   WT +V+GL Q+  +++A
Sbjct: 203 VFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEA 262

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  MR EGV I D     SI+ AC   A  E GKQIH  +    YE  +F+ +A+VD
Sbjct: 263 LDVFRRMRAEGVGI-DQYTFGSILTACGALAASEEGKQIHAYITRTWYEDNVFVGSALVD 321

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY+KC  I  A+ +F RM  ++++SWT++IVG  Q+  +EE +  + EM   G+KP++ T
Sbjct: 322 MYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFT 381

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
              +I +C+++  + +G + F  +    G+   +     L+ L  + G +++A  L   M
Sbjct: 382 LGSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEM 440

Query: 402 PFEPDEPTWAALLSA 416
            F  D+ +W AL++ 
Sbjct: 441 SFH-DQVSWTALVTG 454



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 140/307 (45%), Gaps = 47/307 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HA I +        + + L+D Y KC  ++ A  +   M  R+ +SW +++  Y Q 
Sbjct: 298 KQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQN 357

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ +  FS M  +D ++PD F   S++ +C +L +   G Q H   ++S       V
Sbjct: 358 ACSEEAVRAFSEM-QMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITV 416

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LV +Y KCG   +A  +FD +   + VSWTA+++ YA+ G+ K+ +++FE+      
Sbjct: 417 SNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEK------ 470

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG----- 257
                LV+GL                + +GV  +       ++ AC+   ++E G     
Sbjct: 471 ----MLVNGL----------------KPDGVTFI------GVLSACSRAGLVEKGCDYFD 504

Query: 258 --KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGT 314
             ++ H +V    + +C+      +D+Y++      A++   +M    D   W +++   
Sbjct: 505 SMQKDHDIVPIDDHYTCM------IDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSC 558

Query: 315 AQHGQAE 321
              G  E
Sbjct: 559 RLRGNME 565



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 160/373 (42%), Gaps = 48/373 (12%)

Query: 109 ASLVKACGSLGAT--RLGKQVHACFVLSPFCD--DDVVKSSLVDMYAKCGLPNNARAVFD 164
           A L  A G  G T  R+   VH C +L  F       + + L+  YAK G    AR VFD
Sbjct: 14  AILSSAAGDGGRTGVRVAGAVH-CLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFD 72

Query: 165 SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS 224
            +   N  +  A+LSA A S    D   +F   P R+   + AL++G   + +   +   
Sbjct: 73  EMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQL 132

Query: 225 FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284
           +  + RE       + LS+++   +  +   LG  +H  V+ LG+ +  F+ + +VDMYA
Sbjct: 133 YRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYA 192

Query: 285 K-------------------------------CSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           K                               C  I  AK +F  M  +D ++WT+++ G
Sbjct: 193 KMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTG 252

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF----KSMIEDY 369
             Q+G   E L ++  M + GV  ++ TF  ++ AC  +    +G+++     ++  ED 
Sbjct: 253 LTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYITRTWYEDN 312

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
               S      L+D+ S+   +  AE + + M    +  +W A++     +  +E   R 
Sbjct: 313 VFVGS-----ALVDMYSKCRSIRLAEAVFRRMTCR-NIISWTAMIVGYGQNACSEEAVRA 366

Query: 430 ANHLL--SLKPED 440
            + +    +KP+D
Sbjct: 367 FSEMQMDGIKPDD 379


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/623 (38%), Positives = 350/623 (56%), Gaps = 56/623 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFST-----ML 96
           N +I ++    LV  A H  +  P++D VSW  +L AY +    ++   +F++     ++
Sbjct: 135 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVI 194

Query: 97  ALDKLQPDHFVFASLVKACGSL----------------GATRLGKQVHA--CFVLSPFCD 138
           + + L   +  +  + +A                    G  R G  V A   F  +P   
Sbjct: 195 SWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP-VR 253

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D    +++V  YA+ G+   AR VFD++  +N+VSW AM++AY +     +A E+F   P
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP 313

Query: 199 VRNLFLWTALVSGLVQ--------------------SRNEIDAFYS-----------FIE 227
            RN+  W  +++G  Q                    S   + A YS           FIE
Sbjct: 314 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 373

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M R G + V+    + ++  CA+ A LE G Q+HG +I  GY    F+ NA++ MY KC 
Sbjct: 374 MGRCG-EWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCG 432

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
           ++  A++ F  M  +DVVSW ++I G A+HG  +E L ++D M +   KP+++T VG++ 
Sbjct: 433 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 492

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           ACSH GLV KG   F SM  D+G+T   +HYTC++DLL R+G L EA +L+K MPFEPD 
Sbjct: 493 ACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDS 552

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
             W ALL A + HRN E+G   A  +  L+PE+   Y+LLSN+YAS+  W+   K+R +M
Sbjct: 553 TMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMM 612

Query: 468 SVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
               VKK PG+S+IE     H F AG+  HP K++I+  L +LD  MK+ GYV  T  VL
Sbjct: 613 EERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVL 672

Query: 528 HDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
           HD+E++EKE  L +HSE+LAVAYG+L   PG  +RV+KNLRVCGDCH   K IS I  R 
Sbjct: 673 HDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRL 732

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           I++RD+ R+HHF+ G CSC D+W
Sbjct: 733 ILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 191/407 (46%), Gaps = 34/407 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NTL+ A      +  A  L +EMP RD V++  +++++    L       F        L
Sbjct: 104 NTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD-------L 156

Query: 102 QPDHFVFASLVKACGSLGA-TRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNA 159
            P+       V   G L A  R G+   A  + +   + DV+  ++L+  Y + G  + A
Sbjct: 157 APEK----DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEA 212

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           R +FD +  ++ VSW  M+S YAR G   +A  +F+ APVR++F WTA+VSG  Q+    
Sbjct: 213 RELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQN---- 268

Query: 220 DAFYSFIEMRREGVDIV---DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
                 +E  R   D +   + +  +++V A     +++  K++  ++      S     
Sbjct: 269 ----GMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW---- 320

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
           N ++  YA+   +  AK +F  M +KD VSW +++   +Q G +EETL L+ EM   G  
Sbjct: 321 NTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEW 380

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-DYGITPSLQHYTCLLDLLSRSGHLDEAE 395
            N   F  ++  C+ +  +  G +L   +I   YG+   + +   LL +  + G++++A 
Sbjct: 381 VNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGN--ALLAMYFKCGNMEDAR 438

Query: 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL--LSLKPED 440
           N  + M  E D  +W  +++    H   +    + + +   S KP+D
Sbjct: 439 NAFEEME-ERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDD 484



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 165/375 (44%), Gaps = 59/375 (15%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N  I A+ +   V  A  L   MP+R   ++ ++L  Y+         S+F  +      
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI-----P 96

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PD++ + +L+ A   L  +         F   P   D V  + ++  +A  GL + AR 
Sbjct: 97  RPDNYSYNTLLHA---LAVSSSLADARGLFDEMP-VRDSVTYNVMISSHANHGLVSLARH 152

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
            FD    K++VSW  ML+AY R+GR ++A  +F      ++  W AL+SG VQ     +A
Sbjct: 153 YFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEA 212

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M   G D+V                                        N +V 
Sbjct: 213 RELFDRM--PGRDVVS--------------------------------------WNIMVS 232

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
            YA+  D++ A+ +F     +DV +WT+++ G AQ+G  EE   ++D M     + N V+
Sbjct: 233 GYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM----PERNAVS 288

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           +  ++ A     ++ + ++LF  M        ++  +  +L   +++G L+EA+ +   M
Sbjct: 289 WNAMVAAYIQRRMMDEAKELFNMM-----PCRNVASWNTMLTGYAQAGMLEEAKAVFDTM 343

Query: 402 PFEPDEPTWAALLSA 416
           P + D  +WAA+L+A
Sbjct: 344 P-QKDAVSWAAMLAA 357



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 150/332 (45%), Gaps = 25/332 (7%)

Query: 138 DDDVVKSS-LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           + +V++S+  +  + + G   +A  +F ++  +++ ++ AML+ Y+ +GR   A  +F  
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
            P  + + +  L+  L  S +  DA   F EM      + D +  + ++ + AN  ++ L
Sbjct: 95  IPRPDNYSYNTLLHALAVSSSLADARGLFDEM-----PVRDSVTYNVMISSHANHGLVSL 149

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
            +        L  E      N ++  Y +   +  A+ +F      DV+SW +++ G  Q
Sbjct: 150 ARHY----FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQ 205

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
            G+  E   L+D M    V    V++  ++   +  G + + R+LF     D      + 
Sbjct: 206 WGKMSEARELFDRMPGRDV----VSWNIMVSGYARRGDMVEARRLF-----DAAPVRDVF 256

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
            +T ++   +++G L+EA  +  AMP E +  +W A+++A    R  +     A  L ++
Sbjct: 257 TWTAVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNAMVAAYIQRRMMD----EAKELFNM 311

Query: 437 KP-EDPSSYILLSNVYASAAMWQHVSKVRKLM 467
            P  + +S+  +   YA A M +    V   M
Sbjct: 312 MPCRNVASWNTMLTGYAQAGMLEEAKAVFDTM 343


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  449 bits (1155), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 225/588 (38%), Positives = 346/588 (58%), Gaps = 3/588 (0%)

Query: 25  LHAQIIKLGLHQYGPLPNTLID--AYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +HAQ I  G+     + + ++   A      + YA  L   + + D     +++ AY  +
Sbjct: 54  IHAQTITTGIFSDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFS 113

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P   +  +S M     + PD   F  L+KAC  + + RLG+ +H+      +  +  V
Sbjct: 114 PNPIDAVVFYSEMTESSVVFPDVHTFPLLLKACSEIPSLRLGEAIHSHVFKLGWSSEVSV 173

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            + LV MYA CGL  +A  VFD     +  SW  M+  Y + G  K A  +FE  P R++
Sbjct: 174 SNFLVQMYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDV 233

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W+ +++G VQ     +    F +M  E ++  +  VL + + ACA+   +E G+ I  
Sbjct: 234 VSWSVMINGYVQESRFKEGLGLFQDMMGEKIE-PNESVLVNALSACAHLGAMEQGQWIER 292

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +        + +  A++DMY+KC  +  A ++F +M+ K+V++W+++I G A +GQ ++
Sbjct: 293 YMERKNVRLTVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKD 352

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L+ +M   GVKPNEVTF+G++ ACSH  LV +G   F SM   YG+ P+  H+ C++
Sbjct: 353 ALNLFSQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMV 412

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DL  R+G LD+A+ +IK+MPF+P+   W ALL+AC+ H +TE+G +V   LL L P    
Sbjct: 413 DLYGRAGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPNHGG 472

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            Y+LLSN+YA+   W  V+++R++M   +V K PG S+I+ G   H F AG++SHP  + 
Sbjct: 473 RYVLLSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFIDLGDTIHEFVAGDSSHPQLEM 532

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L E+  E+K  GY PDT  VL DM+++EKE  L  HSE+LA+A+GL+K+ PGT +R
Sbjct: 533 IYAKLGEMSQELKAAGYKPDTGQVLLDMDEEEKETALCHHSEKLAIAFGLIKTDPGTTIR 592

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + KNLRVC DCH   K+IS+I  REI+VRD  R+HHF+DG CSC DFW
Sbjct: 593 ITKNLRVCADCHSATKLISKIYNREIIVRDRCRFHHFRDGSCSCMDFW 640



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 104/224 (46%), Gaps = 32/224 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLG-----------LHQY--------------------G 38
           L+ C+        + +H+ + KLG           +  Y                    G
Sbjct: 143 LKACSEIPSLRLGEAIHSHVFKLGWSSEVSVSNFLVQMYASCGLIESAGLVFDRTPECDG 202

Query: 39  PLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
              N +I  Y KC + + A  + E MP RD VSW+ ++  Y Q +  ++ + +F  M+  
Sbjct: 203 ASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVMINGYVQESRFKEGLGLFQDMMG- 261

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           +K++P+  V  + + AC  LGA   G+ +              + ++L+DMY+KCG    
Sbjct: 262 EKIEPNESVLVNALSACAHLGAMEQGQWIERYMERKNVRLTVRLGTALIDMYSKCGSVER 321

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           A  VF  +K KN ++W+AM++  A +G+ KDA+ +F Q  ++ +
Sbjct: 322 ALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLFSQMEMQGV 365


>gi|125605235|gb|EAZ44271.1| hypothetical protein OsJ_28890 [Oryza sativa Japonica Group]
          Length = 630

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/623 (38%), Positives = 350/623 (56%), Gaps = 56/623 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFST-----ML 96
           N +I ++    LV  A H  +  P++D VSW  +L AY +    ++   +F++     ++
Sbjct: 10  NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVI 69

Query: 97  ALDKLQPDHFVFASLVKACGSL----------------GATRLGKQVHA--CFVLSPFCD 138
           + + L   +  +  + +A                    G  R G  V A   F  +P   
Sbjct: 70  SWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP-VR 128

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D    +++V  YA+ G+   AR VFD++  +N+VSW AM++AY +     +A E+F   P
Sbjct: 129 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP 188

Query: 199 VRNLFLWTALVSGLVQ--------------------SRNEIDAFYS-----------FIE 227
            RN+  W  +++G  Q                    S   + A YS           FIE
Sbjct: 189 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 248

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M R G + V+    + ++  CA+ A LE G Q+HG +I  GY    F+ NA++ MY KC 
Sbjct: 249 MGRCG-EWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCG 307

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
           ++  A++ F  M  +DVVSW ++I G A+HG  +E L ++D M +   KP+++T VG++ 
Sbjct: 308 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 367

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           ACSH GLV KG   F SM  D+G+T   +HYTC++DLL R+G L EA +L+K MPFEPD 
Sbjct: 368 ACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDS 427

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
             W ALL A + HRN E+G   A  +  L+PE+   Y+LLSN+YAS+  W+   K+R +M
Sbjct: 428 TMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMM 487

Query: 468 SVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
               VKK PG+S+IE     H F AG+  HP K++I+  L +LD  MK+ GYV  T  VL
Sbjct: 488 EERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVL 547

Query: 528 HDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
           HD+E++EKE  L +HSE+LAVAYG+L   PG  +RV+KNLRVCGDCH   K IS I  R 
Sbjct: 548 HDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRL 607

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           I++RD+ R+HHF+ G CSC D+W
Sbjct: 608 ILLRDSNRFHHFRGGSCSCGDYW 630


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/623 (38%), Positives = 349/623 (56%), Gaps = 56/623 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFST-----ML 96
           N +I ++    LV  A H  +  P++D VSW  +L AY +    ++   +F++      +
Sbjct: 135 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAI 194

Query: 97  ALDKLQPDHFVFASLVKACGSL----------------GATRLGKQVHA--CFVLSPFCD 138
           + + L   +  +  + +A                    G  R G  V A   F  +P   
Sbjct: 195 SWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP-VR 253

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D    +++V  YA+ G+   AR VFD++  +N+VSW AM++AY +     +A E+F   P
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP 313

Query: 199 VRNLFLWTALVSGLVQ--------------------SRNEIDAFYS-----------FIE 227
            RN+  W  +++G  Q                    S   + A YS           FIE
Sbjct: 314 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 373

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M R G + V+    + ++  CA+ A LE G Q+HG +I  GY    F+ NA++ MY KC 
Sbjct: 374 MGRCG-EWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCG 432

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
           ++  A++ F  M  +DVVSW ++I G A+HG  +E L ++D M +   KP+++T VG++ 
Sbjct: 433 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 492

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           ACSH GLV KG   F SM  D+G+T   +HYTC++DLL R+G L EA +L+K MPFEPD 
Sbjct: 493 ACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDS 552

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
             W ALL A + HRN E+G   A  +  L+PE+   Y+LLSN+YAS+  W+   K+R +M
Sbjct: 553 TMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMM 612

Query: 468 SVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
               VKK PG+S+IE     H F AG+  HP K++I+  L +LD  MK+ GYV  T  VL
Sbjct: 613 EERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVL 672

Query: 528 HDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
           HD+E++EKE  L +HSE+LAVAYG+L   PG  +RV+KNLRVCGDCH   K IS I  R 
Sbjct: 673 HDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFKYISAIEGRL 732

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           I++RD+ R+HHF+ G CSC D+W
Sbjct: 733 ILLRDSNRFHHFRGGSCSCGDYW 755



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 164/375 (43%), Gaps = 59/375 (15%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N  I A+ +   V  A  L   MP+R   ++ ++L  Y+         S+F  +      
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI-----P 96

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PD++ + +L+ A   L  +         F   P   D V  + ++  +A  GL + AR 
Sbjct: 97  RPDNYSYNTLLHA---LAVSSSLADARGLFDEMP-VRDSVTYNVMISSHANHGLVSLARH 152

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
            FD    K++VSW  ML+AY R+GR ++A  +F      +   W AL+SG VQ     +A
Sbjct: 153 YFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQWGKMSEA 212

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M   G D+V                                        N +V 
Sbjct: 213 RELFDRM--PGRDVVS--------------------------------------WNIMVS 232

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
            YA+  D++ A+ +F     +DV +WT+++ G AQ+G  EE   ++D M     + N V+
Sbjct: 233 GYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM----PERNAVS 288

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           +  ++ A     ++ + ++LF  M        ++  +  +L   +++G L+EA+ +   M
Sbjct: 289 WNAMVAAYIQRRMMDEAKELFNMM-----PCRNVASWNTMLTGYAQAGMLEEAKAVFDTM 343

Query: 402 PFEPDEPTWAALLSA 416
           P + D  +WAA+L+A
Sbjct: 344 P-QKDAVSWAAMLAA 357



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 72/332 (21%), Positives = 149/332 (44%), Gaps = 25/332 (7%)

Query: 138 DDDVVKSS-LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           + +V++S+  +  + + G   +A  +F ++  +++ ++ AML+ Y+ +GR   A  +F  
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
            P  + + +  L+  L  S +  DA   F EM      + D +  + ++ + AN  ++ L
Sbjct: 95  IPRPDNYSYNTLLHALAVSSSLADARGLFDEM-----PVRDSVTYNVMISSHANHGLVSL 149

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
            +        L  E      N ++  Y +   +  A+ +F      D +SW +++ G  Q
Sbjct: 150 ARHY----FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALMSGYVQ 205

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
            G+  E   L+D M    V    V++  ++   +  G + + R+LF     D      + 
Sbjct: 206 WGKMSEARELFDRMPGRDV----VSWNIMVSGYARRGDMVEARRLF-----DAAPVRDVF 256

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
            +T ++   +++G L+EA  +  AMP E +  +W A+++A    R  +     A  L ++
Sbjct: 257 TWTAVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNAMVAAYIQRRMMD----EAKELFNM 311

Query: 437 KP-EDPSSYILLSNVYASAAMWQHVSKVRKLM 467
            P  + +S+  +   YA A M +    V   M
Sbjct: 312 MPCRNVASWNTMLTGYAQAGMLEEAKAVFDTM 343


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  449 bits (1154), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/601 (39%), Positives = 340/601 (56%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C         + +H Q+IK G      + + LID Y K   +  AH +L  + + D 
Sbjct: 422 LRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDV 481

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW ++++ Y Q NL  + +  F  ML    +Q D+  F+S + AC  + A   G+Q+HA
Sbjct: 482 VSWTALISGYAQHNLFAEALKHFKEMLN-RGIQSDNIGFSSAISACAGIQALNQGRQIHA 540

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
              +S + +D  + ++LV                               S YAR GR K+
Sbjct: 541 QSYVSGYSEDLSIGNALV-------------------------------SLYARCGRIKE 569

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A   FE+   ++   W  L+SG  QS    DA   F +M R  ++        S V A A
Sbjct: 570 AYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLE-ASFFTFGSAVSAAA 628

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           N A ++ GKQIH ++I  G++S + +SNA++  YAKC  I  A+  F  M  K+ VSW +
Sbjct: 629 NIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNA 688

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G +QHG   E + L+++M   G  PN VTFVG++ ACSHVGLV KG   F+SM +++
Sbjct: 689 MITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEH 748

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G+ P   HY C++DL+SR+G L  A   I+ MP EPD   W  LLSAC  H+N E+G   
Sbjct: 749 GLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFA 808

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A HLL L+PED ++Y+LLSN+YA +  W    + R++M    VKKEPG S+IE     H 
Sbjct: 809 AQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRSWIEVKNSVHA 868

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           FY G+  HPL D+I+E L EL+ +    GY  D  S+L+D+EQ++K+  ++ HSE+LA+ 
Sbjct: 869 FYVGDRLHPLADKIYEFLAELNKKAAEIGYFQDRYSLLNDVEQEQKDPTVYIHSEKLAIT 928

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GLL       + V+KNLRVC DCH  +K +S+I+ R I+VRDA R+HHF+ G CSC D+
Sbjct: 929 FGLLSLSDTVPIHVMKNLRVCKDCHSWIKFVSKISNRAIIVRDAYRFHHFEGGICSCKDY 988

Query: 610 W 610
           W
Sbjct: 989 W 989



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 116/412 (28%), Positives = 197/412 (47%), Gaps = 36/412 (8%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  L +C      +  K LH +I+KLG      L N L+D Y     +     + E+MP
Sbjct: 13  YIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMP 72

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC-GSLGATRLG 124
            R   SW  I++ + +  +  + + +FS M+  + + P    FAS+++AC G     R  
Sbjct: 73  NRSVRSWDKIISGFMEKKMSNRVLDLFSCMIE-ENVSPTEISFASVLRACSGHRIGIRYA 131

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           +Q+HA  +        ++ + L+ +YAK GL  +AR VFD++  K+SVS           
Sbjct: 132 EQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVS----------- 180

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
                               W A++SG  Q+  E +A + F EM   G+    P V SS+
Sbjct: 181 --------------------WVAMISGFSQNGYEEEAIHLFCEMHTAGI-FPTPYVFSSV 219

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           +  C    + ++G+Q+H LV   G     ++ NA+V +Y++  + ++A+ +F +M+ KD 
Sbjct: 220 LSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDE 279

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           VS+ S+I G AQ G ++  L L+ +M    +KP+ VT   L+ AC+  G + KG +L   
Sbjct: 280 VSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSY 339

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +I+  GI+  +     LLDL      +  A  +      E +   W  +L A
Sbjct: 340 VIKA-GISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTE-NVVLWNVMLVA 389



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 207/415 (49%), Gaps = 40/415 (9%)

Query: 10  LRVCARHQIALT-VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           LR C+ H+I +   + +HA+II  GL     + N LI  Y K  L+  A  + + +  +D
Sbjct: 118 LRACSGHRIGIRYAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKD 177

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW ++++ ++Q    ++ I +F  M     + P  +VF+S++  C  +    +G+Q+H
Sbjct: 178 SVSWVAMISGFSQNGYEEEAIHLFCEMHTAG-IFPTPYVFSSVLSGCTKIKLFDVGEQLH 236

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPN--NARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           A         +  V ++LV +Y++  +PN  +A  VF  ++ K+ VS+ +++S  A+ G 
Sbjct: 237 ALVFKYGSSLETYVCNALVTLYSR--MPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGF 294

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
              A+E+F +                               M+R+ +   D + ++S++ 
Sbjct: 295 SDGALELFTK-------------------------------MKRDYLK-PDCVTVASLLS 322

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           ACA+   L  G+Q+H  VI  G  S + +  A++D+Y  CSDI  A ++F   + ++VV 
Sbjct: 323 ACASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVL 382

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W  ++V   +     E+  ++ +M   G+ PN+ T+  ++  C+ VG +  G ++   +I
Sbjct: 383 WNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVI 442

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           +  G   ++   + L+D+ ++ G LD A  +++ +  E D  +W AL+S    H 
Sbjct: 443 KT-GFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLT-EDDVVSWTALISGYAQHN 495



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 128/489 (26%), Positives = 221/489 (45%), Gaps = 51/489 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C + ++    + LHA + K G      + N L+  Y +      A  +  +M  +D 
Sbjct: 220 LSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDE 279

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS+ S+++   Q       + +F+ M   D L+PD    ASL+ AC S GA   G+Q+H+
Sbjct: 280 VSFNSLISGLAQQGFSDGALELFTKM-KRDYLKPDCVTVASLLSACASNGALCKGEQLHS 338

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +    D +V+ +L+D+Y  C                                  K 
Sbjct: 339 YVIKAGISSDMIVEGALLDLYVNCS-------------------------------DIKT 367

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A E+F  A   N+ LW  ++    +  N  ++F  F +M+ +G+ I +     SI+  C 
Sbjct: 368 AHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGL-IPNQFTYPSILRTCT 426

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +   L+LG+QIH  VI  G++  +++ + ++DMYAK   +  A  I   +   DVVSWT+
Sbjct: 427 SVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTA 486

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF-KSMIED 368
           +I G AQH    E L  + EM++ G++ + + F   I AC+ +  + +GR++  +S +  
Sbjct: 487 LISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSG 546

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE----PDEPTWAALLSACKHHRNTE 424
           Y  +  L     L+ L +R G + EA      + FE     D  +W  L+S        E
Sbjct: 547 Y--SEDLSIGNALVSLYARCGRIKEA-----YLEFEKIDAKDSISWNGLISGFAQSGYCE 599

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGY-SYIEF 483
              +V   +   K E  +S+    +  ++AA   ++ K  K +  M +K+  G+ S IE 
Sbjct: 600 DALKVFAQMNRAKLE--ASFFTFGSAVSAAANIANI-KQGKQIHAMIIKR--GFDSDIEV 654

Query: 484 GKGSHIFYA 492
                 FYA
Sbjct: 655 SNALITFYA 663


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 220/571 (38%), Positives = 340/571 (59%), Gaps = 33/571 (5%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   +ID Y KC  V+ A  + + M +++ +SW++++ AY      +K + +F  ML+  
Sbjct: 168 LGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSG 227

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            L PD    ASL+ AC  L   ++G+ +H          D  V ++LVDMY KC      
Sbjct: 228 ML-PDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKC------ 280

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           R +                         +DA  +F++ P R+L  WT ++ G  +  N  
Sbjct: 281 REI-------------------------EDARFLFDKMPERDLVTWTVMIGGYAECGNAN 315

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           ++   F +MR EGV + D + + ++V ACA    +   + I   +    ++  + +  A+
Sbjct: 316 ESLVLFDKMREEGV-VPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAM 374

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           +DM+AKC  + +A++IF RM  K+V+SW+++I     HGQ  + L L+  M+ +G+ PN+
Sbjct: 375 IDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNK 434

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           +T V L+YACSH GLV +G + F  M EDY +   ++HYTC++DLL R+G LDEA  LI+
Sbjct: 435 ITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIE 494

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
           +M  E DE  W A L AC+ H++  +  + A  LL L+P++P  YILLSN+YA+A  W+ 
Sbjct: 495 SMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWED 554

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
           V+K R LMS   +KK PG+++IE    SH F  G+T+HP   EI+E+L  L  +++  GY
Sbjct: 555 VAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELVGY 614

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
           VPDT+ VLHD++++ K   L+ HSE+LA+A+GL+ +   T +R++KNLRVCGDCH   K+
Sbjct: 615 VPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFCKL 674

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +S IT R I+VRDA R+HHFK+G CSC D+W
Sbjct: 675 VSAITGRVIIVRDANRFHHFKEGACSCGDYW 705



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 163/332 (49%), Gaps = 40/332 (12%)

Query: 89  ISIFSTMLALDKL--QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSL 146
           I+ F T   L +   +PD++    +++AC  L   ++G+ +H          D  V ++L
Sbjct: 12  INCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAAL 71

Query: 147 VDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWT 206
           VDMY KC      R +                         +DA  +F++   R+L  WT
Sbjct: 72  VDMYVKC------REI-------------------------EDARFLFDKMQERDLVTWT 100

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
            ++ G  +     ++   F +MR EGV + D + + ++V ACA    +   + I   +  
Sbjct: 101 VMIGGYAECGKANESLVLFEKMREEGV-VPDKVAMVTVVFACAKLGAMHKARIIDDYIQR 159

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
             ++  + +  A++DMYAKC  + +A++IF RM  K+V+SW+++I     HGQ  + L L
Sbjct: 160 KKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDL 219

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC--LLDL 384
           +  M+S+G+ P+++T   L+YACS +  +  GR L   ++  +G+   L H+ C  L+D+
Sbjct: 220 FRMMLSSGMLPDKITLASLLYACSDLKNLQMGR-LIHHIVYKFGL--DLDHFVCAALVDM 276

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             +   +++A  L   MP E D  TW  ++  
Sbjct: 277 YGKCREIEDARFLFDKMP-ERDLVTWTVMIGG 307



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 135/253 (53%), Gaps = 12/253 (4%)

Query: 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267
           +V G  +  + I+ F +F E+ R G    D   L  ++ AC +   L++G+ IH +V   
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGAR-PDNYTLPFVIRACRDLKNLQMGRLIHHIVYKF 59

Query: 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327
           G +   F+  A+VDMY KC +I  A+ +F +M+ +D+V+WT +I G A+ G+A E+L L+
Sbjct: 60  GLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLF 119

Query: 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ----HYTCLLD 383
           ++M   GV P++V  V +++AC+ +G + K R     +I+DY      Q      T ++D
Sbjct: 120 EKMREEGVVPDKVAMVTVVFACAKLGAMHKAR-----IIDDYIQRKKFQLDVILGTAMID 174

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           + ++ G ++ A  +   M  E +  +W+A+++A  +H        +   +LS     P  
Sbjct: 175 MYAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQGRKALDLFRMMLS-SGMLPDK 232

Query: 444 YILLSNVYASAAM 456
             L S +YA + +
Sbjct: 233 ITLASLLYACSDL 245


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 235/601 (39%), Positives = 348/601 (57%), Gaps = 35/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C   +     K LH+ +I+ GL     +  TL+D Y K   V+ +  +   M   + 
Sbjct: 255 LSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNV 314

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW ++++ Y Q+   Q+ I +F  ML    + P+ F F+S++KAC SL    +GKQ+H 
Sbjct: 315 MSWTALISGYVQSRQEQEAIKLFCNMLH-GHVTPNCFTFSSVLKACASLPDFGIGKQLHG 373

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +       + V +SL++MYA+ G    AR  F+ +  KN +S+     A A++    D
Sbjct: 374 QTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADANAKA---LD 430

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           + E F                                E+   GV    P   + ++   A
Sbjct: 431 SDESFNH------------------------------EVEHTGVG-ASPFTYACLLSGAA 459

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               +  G+QIH L++  G+ + L I+NA++ MY+KC +  AA  +F  M  ++V++WTS
Sbjct: 460 CIGTIVKGEQIHALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTS 519

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           II G A+HG A + L L+ EM+  GVKPNEVT++ ++ ACSHVGL+ +  K F SM  ++
Sbjct: 520 IISGFAKHGFATKALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNH 579

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            I+P ++HY C++DLL RSG L EA   I +MPF+ D   W   L +C+ HRNT++G   
Sbjct: 580 SISPRMEHYACMVDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHA 639

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  +L  +P DP++YILLSN+YAS   W  V+ +RK M   ++ KE GYS+IE     H 
Sbjct: 640 AKKILEREPHDPATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDNQVHK 699

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F+ G+TSHP   +I++ L EL  ++K  GY+P+T  VLHD+E ++KE+ LF HSE++AVA
Sbjct: 700 FHVGDTSHPQARKIYDELDELALKIKNLGYIPNTDFVLHDVEDEQKEQYLFQHSEKIAVA 759

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           Y L+ +     +RV KNLRVCGDCH  +K IS +T REIVVRDA R+HH KDGKCSCND+
Sbjct: 760 YALISTPKPKPIRVFKNLRVCGDCHTAIKYISIVTGREIVVRDANRFHHIKDGKCSCNDY 819

Query: 610 W 610
           W
Sbjct: 820 W 820



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 196/403 (48%), Gaps = 40/403 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP--QR 67
           L+ C R       K LH ++I  GL     L N+LI  Y KC   + A  +   M   +R
Sbjct: 46  LKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHKR 105

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDK--LQPDHFVFASLVKACGSLGATRLGK 125
           D VSW++I++ +   ++  + +  F  ML   +  + P+ + F +L+++C +      G 
Sbjct: 106 DLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYCFTALLRSCSNPLFFTTGL 165

Query: 126 QVHACFVLSPFCDDDV-VKSSLVDMYAKCGLP-NNARAVFDSIKLKNSVSWTAMLSAYAR 183
            + A  + + + D  V V  +L+DM+ K GL   +AR VFD ++ KN V+WT M++ Y++
Sbjct: 166 AIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHKNLVTWTLMITRYSQ 225

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            G   DA+++F +               L+ S    D F                  L+S
Sbjct: 226 LGLLDDAVDLFCR---------------LLVSEYTPDKF-----------------TLTS 253

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++ AC       LGKQ+H  VI  G  S +F+   +VDMYAK + +  ++ IF  M   +
Sbjct: 254 LLSACVELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHN 313

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           V+SWT++I G  Q  Q +E + L+  M+   V PN  TF  ++ AC+ +   G G++L  
Sbjct: 314 VMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHG 373

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
             I+  G++        L+++ +RSG ++ A      + FE +
Sbjct: 374 QTIK-LGLSTINCVGNSLINMYARSGTMECARKAFNIL-FEKN 414



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/413 (26%), Positives = 189/413 (45%), Gaps = 39/413 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLG-LHQYGPLPNTLIDAYGKCDL-VQYAHHLLEEMPQR 67
           LR C+      T   + A ++K G    +  +   LID + K  L +Q A  + ++M  +
Sbjct: 152 LRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDKMQHK 211

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           + V+W  ++T Y+Q  L    + +F  +L + +  PD F   SL+ AC  L    LGKQ+
Sbjct: 212 NLVTWTLMITRYSQLGLLDDAVDLFCRLL-VSEYTPDKFTLTSLLSACVELEFFSLGKQL 270

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           H+  + S    D  V  +LVDMYAK     N+R                           
Sbjct: 271 HSWVIRSGLASDVFVGCTLVDMYAKSAAVENSR--------------------------- 303

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
               +IF      N+  WTAL+SG VQSR E +A   F  M    V   +    SS++ A
Sbjct: 304 ----KIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHV-TPNCFTFSSVLKA 358

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
           CA+     +GKQ+HG  I LG  +   + N++++MYA+   +  A+  F  +  K+++S+
Sbjct: 359 CASLPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNLISY 418

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            +     A+   ++E+     E+   GV  +  T+  L+   + +G + KG ++  ++I 
Sbjct: 419 NTAADANAKALDSDESFN--HEVEHTGVGASPFTYACLLSGAACIGTIVKGEQI-HALIV 475

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
             G   +L     L+ + S+ G+ + A  +   M +  +  TW +++S    H
Sbjct: 476 KSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYR-NVITWTSIISGFAKH 527



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 159/330 (48%), Gaps = 39/330 (11%)

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI--KL 168
           L+KAC   G   LGK +H   + S    D V+ +SL+ +Y+KCG   NA ++F ++    
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228
           ++ VSW+A++S +A +                            ++SR    A  +F+ M
Sbjct: 105 RDLVSWSAIISCFANNS---------------------------MESR----ALLTFLHM 133

Query: 229 RREGVDIVDP--LVLSSIVGACANFAVLELGKQIHGLVIALGY-ESCLFISNAIVDMYAK 285
            +   +I+ P     ++++ +C+N      G  I   ++  GY +S + +  A++DM+ K
Sbjct: 134 LQCSRNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTK 193

Query: 286 CS-DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVG 344
              DI +A+ +F +M+ K++V+WT +I   +Q G  ++ + L+  ++ +   P++ T   
Sbjct: 194 GGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTS 253

Query: 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE 404
           L+ AC  +     G++L   +I   G+   +     L+D+ ++S  ++ +  +   M   
Sbjct: 254 LLSACVELEFFSLGKQLHSWVIRS-GLASDVFVGCTLVDMYAKSAAVENSRKIFNTM-LH 311

Query: 405 PDEPTWAALLSACKHHRNTEMGTRVANHLL 434
            +  +W AL+S     R  +   ++  ++L
Sbjct: 312 HNVMSWTALISGYVQSRQEQEAIKLFCNML 341



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 120/285 (42%), Gaps = 45/285 (15%)

Query: 228 MRREGVDIVDPLVLSSIV-GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           + R  +    PL+ SS++  AC     LELGK +H  +I  G      + N+++ +Y+KC
Sbjct: 28  ISRLDLTTTSPLIKSSLLLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKC 87

Query: 287 SDIIAAKDIFGRM--RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG---VKPNEVT 341
            D   A  IF  M   ++D+VSW++II   A +      L  +  M+      + PNE  
Sbjct: 88  GDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCSRNIIYPNEYC 147

Query: 342 FVGLIYACSHVGLVGKGRKLF--------------------------------KSMIEDY 369
           F  L+ +CS+      G  +F                                  M+ D 
Sbjct: 148 FTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLDIQSARMVFDK 207

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMG 426
               +L  +T ++   S+ G LD+A +L   +    + PD+ T  +LLSAC       +G
Sbjct: 208 MQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSACVELEFFSLG 267

Query: 427 TRVANHLL-SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470
            ++ + ++ S    D      L ++YA +A    V   RK+ + M
Sbjct: 268 KQLHSWVIRSGLASDVFVGCTLVDMYAKSAA---VENSRKIFNTM 309


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/586 (39%), Positives = 350/586 (59%), Gaps = 34/586 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LHA I+K GL     + + LI+ Y K  L  ++  + +E P++   +W+S+++A+ Q   
Sbjct: 47  LHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEA 106

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P   +  F  ML  D ++PD  ++ S  KACG L  + +GK VH   V + +  D  V S
Sbjct: 107 PLLALQFFRRMLN-DGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGS 165

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SLVDMYAKCG   +AR +FD +  +N VSW+ M+  YA+     +A+ +F+QA +     
Sbjct: 166 SLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALI----- 220

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                                     E VD+ D    SS++  C++   LELGK IHGL 
Sbjct: 221 --------------------------EDVDVND-FTFSSVIRVCSSSTFLELGKLIHGLC 253

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           + + ++S  F+ +A++ +Y+KC  I  A  +F  +  +++  W S+++  AQH   +   
Sbjct: 254 LKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVF 313

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            L++EM + G+KPN ++F+ ++YACSH GLV KGR+ F S++ DYGI P  +HY  L+DL
Sbjct: 314 GLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYF-SLMRDYGIEPETEHYASLVDL 372

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
           L R+G L EA ++IK MP  P E  W ALL+ C+ H++TEM   VA+ +L +       +
Sbjct: 373 LGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLH 432

Query: 445 ILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIF 504
           +LLSN YA+A  ++  +++RK++    VKKE G S++E G   H F AG+ SH    EI+
Sbjct: 433 VLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIY 492

Query: 505 ELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVV 564
           E L EL+ EM++ GYV DTS VL  ++ +EK   + +HSERLA+A+GL+   PG  +RV+
Sbjct: 493 EKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVM 552

Query: 565 KNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           KNLRVCGDCH  +K +S+   R ++VRD  R+H F+DGKCSC D+W
Sbjct: 553 KNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 142/310 (45%), Gaps = 34/310 (10%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K++H   +K G +    + ++L+D Y KC  +  A HL +EMP+R+ VSW+ ++  Y Q 
Sbjct: 146 KSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQL 205

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           +   + +++F   L ++ +  + F F+S+++ C S     LGK +H   +   F     V
Sbjct: 206 DDGVEALTLFKQAL-IEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFV 264

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            S+L+ +Y+KCG+   A  VFD I  +N   W +ML A A+    +    +FE+      
Sbjct: 265 GSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFEEM----- 319

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                   G V  +     F SF+                S++ AC++  ++E G++   
Sbjct: 320 --------GNVGMKPN---FISFL----------------SVLYACSHAGLVEKGREYFS 352

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS-WTSIIVGTAQHGQAE 321
           L+   G E       ++VD+  +   +  A  +  +M  +   S W +++ G   H   E
Sbjct: 353 LMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTE 412

Query: 322 ETLALYDEMV 331
               + D ++
Sbjct: 413 MAAFVADRIL 422



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 2/172 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +RVC+        K +H   +K+       + + LI  Y KC +++ A+ + +E+P R+ 
Sbjct: 234 IRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNL 293

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
             W S+L A  Q    Q+   +F  M  +  ++P+   F S++ AC   G    G++  +
Sbjct: 294 GLWNSMLIACAQHAHTQRVFGLFEEMGNVG-MKPNFISFLSVLYACSHAGLVEKGREYFS 352

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSA 180
                    +    +SLVD+  + G    A +V   + ++ + S W A+L+ 
Sbjct: 353 LMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTG 404



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 79/161 (49%), Gaps = 2/161 (1%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L  G Q+H  ++  G ++   +S+ ++++Y+K    + +  +F    +K   +W+S+I  
Sbjct: 41  LRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISA 100

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
            AQ+      L  +  M++ GV+P++  +     AC  +     G+ +    ++  G   
Sbjct: 101 FAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKT-GYYC 159

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
            +   + L+D+ ++ G + +A +L   MP E +  +W+ ++
Sbjct: 160 DVFVGSSLVDMYAKCGEIGDARHLFDEMP-ERNVVSWSGMI 199


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 241/634 (38%), Positives = 365/634 (57%), Gaps = 68/634 (10%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           LID + +   +  A  + + + +R  V W  ++T Y QA    K + +F  ML  D  +P
Sbjct: 186 LIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLD-DGFEP 244

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN---AR 160
           D +  +S++ AC  LG+ RLG+Q+H+  +      D  V   LVDMYAK  +  +   AR
Sbjct: 245 DGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHAR 304

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSG-RKKDAMEIFEQ---APVR-------NLF------ 203
            VF ++   N +SWTA++S Y +SG ++ + M +F +     +R       NL       
Sbjct: 305 KVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANL 364

Query: 204 -----------------------LWTALVSGLVQS------RNEIDAFYSF--------I 226
                                  +  ALVS   +S      R   D  Y          +
Sbjct: 365 SDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDV 424

Query: 227 EMRR---------EGVDI-VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
           E  R         EG+D  V     +S++ A A+  +L  G+++H L +  G+ S   IS
Sbjct: 425 ETERNNASCSSKIEGMDDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGIS 484

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
           N++V MYA+C  +  A   F  M+  +V+SWTSII G A+HG A++ L+++ +M+ AGVK
Sbjct: 485 NSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVK 544

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
           PN+VT++ ++ ACSHVGLV +G++ F+SM +D+G+ P ++HY C++DLL+RSG ++EA  
Sbjct: 545 PNDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQ 604

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
            I  MP + D   W  LLSAC+ + NTE+G   ANH+++L+P DP+ Y+LLSN+YA A +
Sbjct: 605 FINEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGL 664

Query: 457 WQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKR 516
           W  V+++R LM    + KE G S+++ G   H F AG+TSHPL  +I+  L  L  E+K 
Sbjct: 665 WDEVARIRSLMRDKNLSKETGLSWMDVGNTIHEFRAGDTSHPLAIDIYAKLVTLIREIKD 724

Query: 517 RGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIV 576
            GYVPDTS VLHDM ++ KE+ L  HSE++AVA+GL+ +     +R+ KNLRVC DCH  
Sbjct: 725 IGYVPDTSIVLHDMSEELKEQYLLQHSEKIAVAFGLITTSATKPMRIFKNLRVCADCHSA 784

Query: 577 MKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +K IS+ T REI++RD+ R+H  KDG CSC ++W
Sbjct: 785 IKYISKSTGREIILRDSNRFHRMKDGICSCGEYW 818



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 128/532 (24%), Positives = 236/532 (44%), Gaps = 77/532 (14%)

Query: 23  KTLHAQIIKLG-LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM-PQRDHVSWASILTAYN 80
           + LH ++++   L     + N+L+  Y KC  V+ A  + ++M   RD VSW ++ +   
Sbjct: 60  RALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLA 119

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL-SPFCDD 139
           +    ++++ +   ML L  L+P+ F   +  +AC      RL   V   FVL + F   
Sbjct: 120 RNGAERESLRLLGEMLEL-GLRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGT 178

Query: 140 DV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           DV V  +L+DM+A+ G    A+ VFD +  + SV WT +++ Y ++G     +E+     
Sbjct: 179 DVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVEL----- 233

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
                                     F+ M  +G +  D   +SS++ AC     + LG+
Sbjct: 234 --------------------------FLHMLDDGFE-PDGYSMSSMISACTELGSVRLGQ 266

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCS---DIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
           Q+H + + LG  S   +S  +VDMYAK      +  A+ +F  M R +V+SWT++I G  
Sbjct: 267 QLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYV 326

Query: 316 QHG-QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
           Q G Q    +AL+ EM++  ++PN +T+  L+ AC+++     GR+     I  + +  S
Sbjct: 327 QSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQ-----IHAHVLKTS 381

Query: 375 LQHY----TCLLDLLSRSGHLDEAENLI------KAMPFEPDEPTWAALLSACKHHRNTE 424
           + H       L+ + + SG ++EA            +   PD  T            N  
Sbjct: 382 IAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVET---------ERNNAS 432

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV---MEVKKEPGYS-- 479
             +++         +D  S    +++ ++AA    ++K +KL ++      + + G S  
Sbjct: 433 CSSKIEGM------DDGVSTFTFASLLSAAASVGLLTKGQKLHALSMKAGFRSDQGISNS 486

Query: 480 -YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDM 530
               + +  ++  A      +KD      T + + + + GY     S+ HDM
Sbjct: 487 LVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDM 538



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/324 (22%), Positives = 139/324 (42%), Gaps = 53/324 (16%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y + L+ CA      + + +HA ++K  +     + N L+  Y +   ++ A    +++ 
Sbjct: 354 YSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCMEEARKAFDQLY 413

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +       +IL+        +   S  S +  +D      F FASL+ A  S+G    G+
Sbjct: 414 E------TNILSMSPDVETERNNASCSSKIEGMDD-GVSTFTFASLLSAAASVGLLTKGQ 466

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++HA  + + F  D  + +SLV MYA+CG   +A   FD +K  N +SWT+++S  A+ G
Sbjct: 467 KLHALSMKAGFRSDQGISNSLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHG 526

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             K A+ +F                                +M   GV   D   + +++
Sbjct: 527 YAKQALSMFH-------------------------------DMILAGVKPNDVTYI-AVL 554

Query: 246 GACANFAVLELGKQ-------IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
            AC++  +++ GK+        HGL+  + + +C      IVD+ A+   +  A+     
Sbjct: 555 SACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYAC------IVDLLARSGLVEEARQFINE 608

Query: 299 MR-RKDVVSWTSIIVGTAQHGQAE 321
           M  + D + W +++     +G  E
Sbjct: 609 MPCKADALVWKTLLSACRTYGNTE 632



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 146/326 (44%), Gaps = 46/326 (14%)

Query: 101 LQPDHFVFAS-LVKACGSLGATRLGKQVHACFVLSPFCDDD-VVKSSLVDMYAKCGLPNN 158
           L  DH   A+ L+ +    G  RLG+ +H   + S   D D VV +SL+ MY+KCG    
Sbjct: 35  LSSDHSCDAAKLLTSAARAGDLRLGRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEA 94

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ-APVRNLFLWTALVSGLVQSRN 217
           AR                                +F+Q   VR+L  WTA+ S L ++  
Sbjct: 95  AR-------------------------------RVFDQMCGVRDLVSWTAMASCLARNGA 123

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL-GKQIHGLVIALGY-ESCLFI 275
           E ++     EM   G+   +   L +   AC    +  L G  + G V+  G+  + + +
Sbjct: 124 ERESLRLLGEMLELGLR-PNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSV 182

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
             A++DM+A+  D++AA+ +F  +  +  V WT +I    Q G A + + L+  M+  G 
Sbjct: 183 GCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGF 242

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFK-----SMIEDYGITPSLQHYTCLLDLLSRSGH 390
           +P+  +   +I AC+ +G V  G++L        ++ D  ++  L      L  + RS  
Sbjct: 243 EPDGYSMSSMISACTELGSVRLGQQLHSVALRLGLVSDSCVSCGLVDMYAKLK-MERS-- 299

Query: 391 LDEAENLIKAMPFEPDEPTWAALLSA 416
           ++ A  + K MP   +  +W AL+S 
Sbjct: 300 MEHARKVFKTMP-RHNVMSWTALISG 324


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/649 (36%), Positives = 356/649 (54%), Gaps = 78/649 (12%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C   +     K +H   I+ G      + N LIDAY KC L++ A  +   M  +D 
Sbjct: 272 LPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV 331

Query: 70  VSWASILTAYNQA----------------NLP-------------------QKTISIFST 94
           VSW +++  Y+Q+                N+P                    + +++F  
Sbjct: 332 VSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQ 391

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA-----CFVL--SPFCDDD---VVKS 144
           M+    L P+     S++ AC SLGA   G ++HA     C +   + F  +D   +V +
Sbjct: 392 MIFSGSL-PNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYN 450

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +L+DMY+KC     AR++FD I L+                              RN+  
Sbjct: 451 ALIDMYSKCRSFKAARSIFDDIPLEE-----------------------------RNVVT 481

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIHGL 263
           WT ++ G  Q  +  DA   F+EM  E   +  +   +S I+ ACA+ A + +GKQIH  
Sbjct: 482 WTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAY 541

Query: 264 VIAL-GYES-CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           V+    YES   F++N ++DMY+KC D+  A+ +F  M +K  +SWTS++ G   HG+  
Sbjct: 542 VLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGS 601

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L ++D+M  AG  P+++TF+ ++YACSH G+V +G   F SM  DYG+TP  +HY C 
Sbjct: 602 EALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACA 661

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL+RSG LD+A   +K MP EP    W ALLSAC+ H N E+     N L+ +  E+ 
Sbjct: 662 IDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAEND 721

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            SY L+SN+YA+A  W+ V+++R LM    +KK PG S+++  KG+  F+ G+ SHPL  
Sbjct: 722 GSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSP 781

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           +I+ LL  L   +K  GYVP+T+  LHD++++EK   L  HSE+LA+AYGLL + PG  +
Sbjct: 782 QIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPI 841

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+ KNLRVCGDCH     IS+I   EIVVRD +R+HHFK+G CSC  +W
Sbjct: 842 RITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 890



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 223/445 (50%), Gaps = 30/445 (6%)

Query: 8   HRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR 67
           H L+ C            H  I   G      + N L+  Y +C  ++ A  + +E+ QR
Sbjct: 160 HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 219

Query: 68  ---DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP-----DHFVFASLVKACGSLG 119
              D +SW SI++A+ +++     + +FS M  +   +P     D     +++ ACGSL 
Sbjct: 220 GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 279

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
           A    K+VH   + +    D  V ++L+D YAKCGL  NA  VF+ ++ K+ VSW AM++
Sbjct: 280 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 339

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFL----WTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
            Y++SG  + A E+F+     N+ L    WTA+++G  Q     +A   F +M   G  +
Sbjct: 340 GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSG-SL 398

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIAL----------GYESCLFISNAIVDMYAK 285
            + + + S++ ACA+      G +IH   +            G +  L + NA++DMY+K
Sbjct: 399 PNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 458

Query: 286 CSDIIAAKDIFGR--MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA--GVKPNEVT 341
           C    AA+ IF    +  ++VV+WT +I G AQ+G + + L L+ EM+S   GV PN  T
Sbjct: 459 CRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYT 518

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY-TCLLDLLSRSGHLDEAENLIKA 400
              ++ AC+H+  +  G+++   ++  +    S      CL+D+ S+ G +D A ++  +
Sbjct: 519 ISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDS 578

Query: 401 MPFEPDEPTWAALLSACK-HHRNTE 424
           M  +    +W ++++    H R +E
Sbjct: 579 MS-QKSAISWTSMMTGYGMHGRGSE 602



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 139/629 (22%), Positives = 250/629 (39%), Gaps = 148/629 (23%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYG--------------------PLPNT 43
           SH+   L+ C   + A TV  +H QII  GL                         L   
Sbjct: 38  SHFASLLKEC---KSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTG 94

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           ++ +Y  C    YA  +LE +     V W  ++  + +       I++   ML     +P
Sbjct: 95  VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGT-RP 153

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           DHF    ++KACG L + R G   H     + F  +  + ++LV MY++CG    A  +F
Sbjct: 154 DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 213

Query: 164 DSIK---LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
           D I    + + +SW +++SA+ +S     A+++F +                        
Sbjct: 214 DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSK------------------------ 249

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
              + I   +   +  D + + +I+ AC +   +   K++HG  I  G    +F+ NA++
Sbjct: 250 --MTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALI 307

Query: 281 DMYAKCS---------------DII----------------AAKDIFGRMRRK----DVV 305
           D YAKC                D++                AA ++F  MR++    DVV
Sbjct: 308 DAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVV 367

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL---- 361
           +WT++I G +Q G + E L L+ +M+ +G  PN VT + ++ AC+ +G   +G ++    
Sbjct: 368 TWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYS 427

Query: 362 ----FKSMIEDY-GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE------------ 404
                 ++  D+ G    L  Y  L+D+ S+      A ++   +P E            
Sbjct: 428 LKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 487

Query: 405 --------------------------PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
                                     P+  T + +L AC H     +G ++  ++L    
Sbjct: 488 GHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHR 547

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
            + S+Y + + +    +    V   R +   M  K    ++ +  G G H    G  S  
Sbjct: 548 YESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMH----GRGSEA 603

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVL 527
           L  +IF+       +M++ G+VPD  + L
Sbjct: 604 L--DIFD-------KMRKAGFVPDDITFL 623



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 136/351 (38%), Gaps = 68/351 (19%)

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLS--------------------PFCDDDVV 142
           P HF  ASL+K C S        Q+H   + S                    PF     +
Sbjct: 37  PSHF--ASLLKECKSANTVH---QIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSL 91

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            + +V  Y  CG  + A  V + +    +V W  ++  + + GR   A+ +         
Sbjct: 92  GTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVS-------- 143

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                    M R G    D   L  ++ AC        G   HG
Sbjct: 144 -----------------------CRMLRAGTR-PDHFTLPHVLKACGELPSYRCGSAFHG 179

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK---DVVSWTSIIVGTAQHGQ 319
           L+   G+ES +FI NA+V MY++C  +  A  IF  + ++   DV+SW SI+    +   
Sbjct: 180 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 239

Query: 320 AEETLALYDEMV------SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
           A   L L+ +M           + + ++ V ++ AC  +  V + +++  + I + G  P
Sbjct: 240 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRN-GTFP 298

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
            +     L+D  ++ G ++ A  +   M F+ D  +W A+++      N E
Sbjct: 299 DVFVGNALIDAYAKCGLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFE 348


>gi|296085005|emb|CBI28420.3| unnamed protein product [Vitis vinifera]
          Length = 631

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 236/624 (37%), Positives = 363/624 (58%), Gaps = 22/624 (3%)

Query: 3   ISHYLHR--LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYG--KCDLVQYAH 58
           + H LH    + C+  Q    V+ LHA  +K  +  +  + + L+  Y   K + + YA 
Sbjct: 14  LPHNLHLSLFQTCSAPQ---EVEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYAR 70

Query: 59  HLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSL 118
            + + + +R  + W +I+  Y +       I +F  ++   +  PD+F    ++K C  L
Sbjct: 71  SIFDRIQRRSLIHWNTIIKCYVENQFSHDGIVLFHELV--HEYLPDNFTLPCVIKGCARL 128

Query: 119 GATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK--------- 169
           G  + GKQ+H   +   F  D  V+ SLV+MY+KCG  + AR VFD +  K         
Sbjct: 129 GVVQEGKQIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLI 188

Query: 170 --NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
             N VSW AM++ Y +SG    A+E+F Q P+ +L  W  +++G   +   +DA   F  
Sbjct: 189 DGNLVSWNAMINGYMKSGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFM 248

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M + G        L S++ A +  AVL  G+ IH  +   G+E    +  ++++MYAKC 
Sbjct: 249 MLKLGSR-PSHATLVSVLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCG 307

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            I +A  +F  +++K V  WT+IIVG   HG A   LAL+ EM   G+KPN + F+G++ 
Sbjct: 308 CIESALTVFRAIQKKKVGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLN 367

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           AC+H GLV  GR+ F  M+ +Y I P+L+HY CL+D+L R+GHL+EA+N I+ MP  P++
Sbjct: 368 ACNHAGLVDDGRQYFDMMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNK 427

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
             W +LL   ++H   ++G   A  ++ + PE    YILLSN+YA++ MW+ VS VR++M
Sbjct: 428 VIWMSLLGGSRNHGKIDIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMM 487

Query: 468 SVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
                +K+PG S +E     H F  G+ SHP   EI+  ++E+  ++K  G+VPDT+ VL
Sbjct: 488 YKRGFRKDPGCSSVEHKGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVL 547

Query: 528 HDME-QKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKR 586
             +E +KEKE +L  HSERLA+A+GL+   PG  +R++KNLRVC DCH V K++S+I  R
Sbjct: 548 LCIEGEKEKEAELENHSERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSR 607

Query: 587 EIVVRDATRYHHFKDGKCSCNDFW 610
           EI+VRD  R+HHFK+G CSC D+W
Sbjct: 608 EIIVRDNCRFHHFKNGSCSCMDYW 631


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/586 (39%), Positives = 349/586 (59%), Gaps = 34/586 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LHA I+K GL     + + LI+ Y K  L  ++  + +E P++   +W+S+++A+ Q   
Sbjct: 47  LHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISAFAQNEA 106

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P   +  F  ML  D ++PD  ++ S  KACG L  + +GK VH   V + +  D  V S
Sbjct: 107 PLLALQFFRRMLN-DGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKTGYYCDVFVGS 165

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SLVDMYAKCG   +AR +FD +  +N VSW+ M+  YA+     +A+ +F+QA +     
Sbjct: 166 SLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQLDDGVEALTLFKQALI----- 220

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                                     E VD+ D    SS++  C++   LELGK IHGL 
Sbjct: 221 --------------------------EDVDVND-FTFSSVIRVCSSSTFLELGKLIHGLC 253

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           + + ++S  F+ +A++ +Y+KC  I  A  +F  +  +++  W S+++  AQH   +   
Sbjct: 254 LKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVF 313

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            L++EM + G+KPN + F+ ++YACSH GLV KGR+ F S++ DYGI P  +HY  L+DL
Sbjct: 314 GLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYF-SLMRDYGIEPETEHYASLVDL 372

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
           L R+G L EA ++IK MP  P E  W ALL+ C+ H++TEM   VA+ +L +       +
Sbjct: 373 LGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDSSSSGLH 432

Query: 445 ILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIF 504
           +LLSN YA+A  ++  +++RK++    VKKE G S++E G   H F AG+ SH    EI+
Sbjct: 433 VLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWVEEGNKVHTFTAGDRSHAKWVEIY 492

Query: 505 ELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVV 564
           E L EL+ EM++ GYV DTS VL  ++ +EK   + +HSERLA+A+GL+   PG  +RV+
Sbjct: 493 EKLEELEEEMEKAGYVADTSFVLRAVDGEEKNETIRYHSERLAIAFGLITFPPGRPIRVM 552

Query: 565 KNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           KNLRVCGDCH  +K +S+   R ++VRD  R+H F+DGKCSC D+W
Sbjct: 553 KNLRVCGDCHAAIKFMSKCCGRVLIVRDNNRFHRFEDGKCSCGDYW 598



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 74/310 (23%), Positives = 140/310 (45%), Gaps = 34/310 (10%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K++H   +K G +    + ++L+D Y KC  +  A HL +EMP+R+ VSW+ ++  Y Q 
Sbjct: 146 KSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMPERNVVSWSGMIYGYAQL 205

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           +   + +++F   L ++ +  + F F+S+++ C S     LGK +H   +   F     V
Sbjct: 206 DDGVEALTLFKQAL-IEDVDVNDFTFSSVIRVCSSSTFLELGKLIHGLCLKMSFDSSSFV 264

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            S+L+ +Y+KCG+   A  VFD I  +N   W +ML A A+    +    +FE       
Sbjct: 265 GSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHAHTQRVFGLFE------- 317

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                   EM   G+   + +   S++ AC++  ++E G++   
Sbjct: 318 ------------------------EMGNVGMK-PNFIXFLSVLYACSHAGLVEKGREYFS 352

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS-WTSIIVGTAQHGQAE 321
           L+   G E       ++VD+  +   +  A  +  +M  +   S W +++ G   H   E
Sbjct: 353 LMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTE 412

Query: 322 ETLALYDEMV 331
               + D ++
Sbjct: 413 MAAFVADRIL 422



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/172 (23%), Positives = 79/172 (45%), Gaps = 2/172 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +RVC+        K +H   +K+       + + LI  Y KC +++ A+ + +E+P R+ 
Sbjct: 234 IRVCSSSTFLELGKLIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNL 293

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
             W S+L A  Q    Q+   +F  M  +  ++P+   F S++ AC   G    G++  +
Sbjct: 294 GLWNSMLIACAQHAHTQRVFGLFEEMGNVG-MKPNFIXFLSVLYACSHAGLVEKGREYFS 352

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSA 180
                    +    +SLVD+  + G    A +V   + ++ + S W A+L+ 
Sbjct: 353 LMRDYGIEPETEHYASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTG 404



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/161 (20%), Positives = 79/161 (49%), Gaps = 2/161 (1%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L  G Q+H  ++  G ++   +S+ ++++Y+K    + +  +F    +K   +W+S+I  
Sbjct: 41  LRQGLQLHAHILKFGLQTIPLVSHNLINLYSKTQLPLFSLQVFDETPKKSSTTWSSVISA 100

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
            AQ+      L  +  M++ GV+P++  +     AC  +     G+ +    ++  G   
Sbjct: 101 FAQNEAPLLALQFFRRMLNDGVRPDDHIYPSATKACGFLRRSDVGKSVHCLAVKT-GYYC 159

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
            +   + L+D+ ++ G + +A +L   MP E +  +W+ ++
Sbjct: 160 DVFVGSSLVDMYAKCGEIGDARHLFDEMP-ERNVVSWSGMI 199


>gi|359497398|ref|XP_002270940.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 640

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/621 (37%), Positives = 358/621 (57%), Gaps = 37/621 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKC----DLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           +HA IIK  L     +   L+     C    DL+ YA  + +E+P  D   W +++ AY 
Sbjct: 22  IHALIIKTSLDGNNFVLAKLLRRLFACSSANDLL-YARSVFDEIPSPDTFIWNTMIRAYL 80

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
            +  PQ+++S+F  M   + +  D +  + +++ACG L     G+++H   +      D 
Sbjct: 81  NSQNPQESMSLFFQMRHQECIPIDSYSLSLVIQACGRLKDPGNGQKLHTQVLKIGLGSDL 140

Query: 141 VVKSSLVDMYAKCG-----------------LPNN--------------ARAVFDSIKLK 169
            V+++L++MYAK G                 +P N              A  +FD +  +
Sbjct: 141 FVETALIEMYAKFGDIEIARNILDEMAHPDLVPYNVLLAEYVRVGEINLAHDLFDRMPER 200

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
           + VSW  M+  +A  G    A ++F++   R+L  W+++++   ++R   +A   F EM+
Sbjct: 201 DLVSWNTMIHGHASLGDVGTAKKLFDRTCERDLISWSSMIAAYAKARQSNEALRLFHEMQ 260

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289
              V + D + + S++ AC +   L +GK IH  +     E  L +  ++VDMYAKC DI
Sbjct: 261 LANV-LPDKVTMVSVLSACGDVGALGMGKMIHECIERNRIEIDLKLGTSLVDMYAKCGDI 319

Query: 290 IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349
             +  +F  M  +DV +W+++I+G A HG  E  L  + +M+S  +KPN+VTF+G++ AC
Sbjct: 320 DNSLRVFNGMNNRDVFAWSAMIMGLANHGFGELALDHFSKMISEDIKPNDVTFIGVLSAC 379

Query: 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
           SH+GLV +G   F SM + Y ++P ++HY C++D+L R+G L EA  LIK+MPF PD   
Sbjct: 380 SHIGLVDEGWTYFTSMSKVYDVSPKIEHYGCVVDILGRAGRLQEAMELIKSMPFAPDAIV 439

Query: 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469
           W ALL AC+ ++N E+      +LL L+P    +Y+LLSN+Y+ A  W  V  VR++M  
Sbjct: 440 WRALLGACRIYKNVEIAEEATVNLLELEPHVDGNYVLLSNIYSQAKEWDKVVNVRRMMKN 499

Query: 470 MEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHD 529
           + ++K PG S IE     H F AG+ SHP   +I  +L+E+ A +K  GY P T+SVL D
Sbjct: 500 INIQKVPGSSSIEVDNAVHEFVAGDQSHPESKKILRMLSEITARLKANGYAPLTASVLQD 559

Query: 530 MEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIV 589
            ++KEKE  L  HSE+LA+A+GLL + PG+ +R+VKNLRVC DCHI +K+ISR  KR I+
Sbjct: 560 FDEKEKENALAHHSEKLAIAFGLLSTAPGSTIRIVKNLRVCDDCHIAIKLISRTYKRRII 619

Query: 590 VRDATRYHHFKDGKCSCNDFW 610
           VRD  R+HHF +G CSC D+W
Sbjct: 620 VRDRNRFHHFVNGSCSCKDYW 640



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 106/249 (42%), Gaps = 63/249 (25%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC----------------DL 53
           ++ C R +     + LH Q++K+GL     +   LI+ Y K                 DL
Sbjct: 112 IQACGRLKDPGNGQKLHTQVLKIGLGSDLFVETALIEMYAKFGDIEIARNILDEMAHPDL 171

Query: 54  VQY---------------AHHLLEEMPQRDHV---------------------------- 70
           V Y               AH L + MP+RD V                            
Sbjct: 172 VPYNVLLAEYVRVGEINLAHDLFDRMPERDLVSWNTMIHGHASLGDVGTAKKLFDRTCER 231

Query: 71  ---SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
              SW+S++ AY +A    + + +F  M  L  + PD     S++ ACG +GA  +GK +
Sbjct: 232 DLISWSSMIAAYAKARQSNEALRLFHEM-QLANVLPDKVTMVSVLSACGDVGALGMGKMI 290

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           H C   +    D  + +SLVDMYAKCG  +N+  VF+ +  ++  +W+AM+   A  G  
Sbjct: 291 HECIERNRIEIDLKLGTSLVDMYAKCGDIDNSLRVFNGMNNRDVFAWSAMIMGLANHGFG 350

Query: 188 KDAMEIFEQ 196
           + A++ F +
Sbjct: 351 ELALDHFSK 359


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 229/605 (37%), Positives = 352/605 (58%), Gaps = 37/605 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL---VQYAHHLLEEMPQ 66
           +  CA  ++ L  + LH+Q I+ GL     +   LI+ Y KC +   +  A  + +++  
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD 337

Query: 67  RDHVSWASILTAYNQ-ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            +  SW +++T Y Q     ++ + +F  M+ L  + P+HF F+S +KAC +L A R+G+
Sbjct: 338 HNVFSWTAMITGYVQKGGYDEEALDLFRGMI-LTHVIPNHFTFSSTLKACANLAALRIGE 396

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           QV    V   F   + V +SL+ MYA                               RSG
Sbjct: 397 QVFTHAVKLGFSSVNCVANSLISMYA-------------------------------RSG 425

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
           R  DA + F+    +NL  +  ++    ++ N  +A   F E+  +G+        +S++
Sbjct: 426 RIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMG-ASAFTFASLL 484

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
              A+   +  G+QIH  VI  G +    + NA++ MY++C +I +A  +F  M  ++V+
Sbjct: 485 SGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVI 544

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SWTSII G A+HG A + L L+ +M+  GV+PNEVT++ ++ ACSHVGLV +G K FKSM
Sbjct: 545 SWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSM 604

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
             ++G+ P ++HY C++D+L RSG L EA   I +MP++ D   W   L AC+ H N E+
Sbjct: 605 YTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLEL 664

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G   A  ++  +P DP++YILLSN+YAS + W  VS +RK M    + KE G S++E   
Sbjct: 665 GKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVEN 724

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H FY G+TSHP   EI++ L  L  ++K+ GYVP+   VLHD+E+++KE+ LF HSE+
Sbjct: 725 KVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEK 784

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           +AVA+GL+ +     +RV KNLR+CGDCH  +K IS  T REI+VRDA R+HH KDG+CS
Sbjct: 785 IAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCS 844

Query: 606 CNDFW 610
           CN++W
Sbjct: 845 CNEYW 849



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 201/417 (48%), Gaps = 43/417 (10%)

Query: 11  RVCARHQIALTVKTLHAQIIKLGLHQYGPLPNT-LIDAY--GKCDLVQYAHHLLEEMPQR 67
           R C+  +      ++   +IK G  Q        LID +  G+ DLV  A  + E+MP+R
Sbjct: 176 RACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVS-AFKVFEKMPER 234

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           + V+W  ++T   Q     + I +F  M+     +PD F  + ++ AC ++    LG+Q+
Sbjct: 235 NAVTWTLMITRLMQFGYAGEAIDLFLDMI-FSGYEPDRFTLSGVISACANMELLLLGQQL 293

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNN---ARAVFDSIKLKNSVSWTAMLSAYA-R 183
           H+  +      D  V   L++MYAKC +  +   AR +FD I   N  SWTAM++ Y  +
Sbjct: 294 HSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQK 353

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            G  ++A+++F    + ++                                I +    SS
Sbjct: 354 GGYDEEALDLFRGMILTHV--------------------------------IPNHFTFSS 381

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
            + ACAN A L +G+Q+    + LG+ S   ++N+++ MYA+   I  A+  F  +  K+
Sbjct: 382 TLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKN 441

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           ++S+ ++I   A++  +EE L L++E+   G+  +  TF  L+   + +G +GKG ++  
Sbjct: 442 LISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHA 501

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            +I+  G+  +      L+ + SR G+++ A  + + M  + +  +W ++++    H
Sbjct: 502 RVIKS-GLKLNQSVCNALISMYSRCGNIESAFQVFEDME-DRNVISWTSIITGFAKH 556



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 201/432 (46%), Gaps = 44/432 (10%)

Query: 10  LRVCARHQIALTVKTL-HAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM-PQR 67
           L+ C R + +  + TL H ++ +  L       N+LI  Y KC   + A  +   M   R
Sbjct: 73  LKKCIRTR-SFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSR 131

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           D +SW+++++ +   N+  + +  F  M+  +   P+ + FA+  +AC +     +G  +
Sbjct: 132 DLISWSAMVSCFANNNMGFRALLTFVDMIE-NGYYPNEYCFAAATRACSTAEFVSVGDSI 190

Query: 128 HACFVLSPFCDDDV-VKSSLVDMYAKC-GLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
               + + +   DV V   L+DM+ K  G   +A  VF+ +  +N+V+WT M++   + G
Sbjct: 191 FGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFG 250

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
              +A+++F                        +D  +S  E         D   LS ++
Sbjct: 251 YAGEAIDLF------------------------LDMIFSGYE--------PDRFTLSGVI 278

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS---DIIAAKDIFGRMRRK 302
            ACAN  +L LG+Q+H   I  G      +   +++MYAKCS    + AA+ IF ++   
Sbjct: 279 SACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDH 338

Query: 303 DVVSWTSIIVGTAQHGQ-AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           +V SWT++I G  Q G   EE L L+  M+   V PN  TF   + AC+++  +  G ++
Sbjct: 339 NVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQV 398

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F   ++  G +        L+ + +RSG +D+A      + FE +  ++  ++ A   + 
Sbjct: 399 FTHAVK-LGFSSVNCVANSLISMYARSGRIDDARKAFDIL-FEKNLISYNTVIDAYAKNL 456

Query: 422 NTEMGTRVANHL 433
           N+E    + N +
Sbjct: 457 NSEEALELFNEI 468


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  447 bits (1150), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 240/649 (36%), Positives = 356/649 (54%), Gaps = 78/649 (12%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C   +     K +H   I+ G      + N LIDAY KC L++ A  +   M  +D 
Sbjct: 279 LPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV 338

Query: 70  VSWASILTAYNQA----------------NLP-------------------QKTISIFST 94
           VSW +++  Y+Q+                N+P                    + +++F  
Sbjct: 339 VSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQ 398

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA-----CFVL--SPFCDDD---VVKS 144
           M+    L P+     S++ AC SLGA   G ++HA     C +   + F  +D   +V +
Sbjct: 399 MIFSGSL-PNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYN 457

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +L+DMY+KC     AR++FD I L+                              RN+  
Sbjct: 458 ALIDMYSKCRSFKAARSIFDDIPLEE-----------------------------RNVVT 488

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIHGL 263
           WT ++ G  Q  +  DA   F+EM  E   +  +   +S I+ ACA+ A + +GKQIH  
Sbjct: 489 WTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAY 548

Query: 264 VIAL-GYES-CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           V+    YES   F++N ++DMY+KC D+  A+ +F  M +K  +SWTS++ G   HG+  
Sbjct: 549 VLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGS 608

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L ++D+M  AG  P+++TF+ ++YACSH G+V +G   F SM  DYG+TP  +HY C 
Sbjct: 609 EALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYACA 668

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL+RSG LD+A   +K MP EP    W ALLSAC+ H N E+     N L+ +  E+ 
Sbjct: 669 IDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAEND 728

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            SY L+SN+YA+A  W+ V+++R LM    +KK PG S+++  KG+  F+ G+ SHPL  
Sbjct: 729 GSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSP 788

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           +I+ LL  L   +K  GYVP+T+  LHD++++EK   L  HSE+LA+AYGLL + PG  +
Sbjct: 789 QIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTSPGCPI 848

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+ KNLRVCGDCH     IS+I   EIVVRD +R+HHFK+G CSC  +W
Sbjct: 849 RITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 897



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 223/445 (50%), Gaps = 30/445 (6%)

Query: 8   HRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR 67
           H L+ C            H  I   G      + N L+  Y +C  ++ A  + +E+ QR
Sbjct: 167 HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 226

Query: 68  ---DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP-----DHFVFASLVKACGSLG 119
              D +SW SI++A+ +++     + +FS M  +   +P     D     +++ ACGSL 
Sbjct: 227 GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 286

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
           A    K+VH   + +    D  V ++L+D YAKCGL  NA  VF+ ++ K+ VSW AM++
Sbjct: 287 AVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 346

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFL----WTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
            Y++SG  + A E+F+     N+ L    WTA+++G  Q     +A   F +M   G  +
Sbjct: 347 GYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSG-SL 405

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIAL----------GYESCLFISNAIVDMYAK 285
            + + + S++ ACA+      G +IH   +            G +  L + NA++DMY+K
Sbjct: 406 PNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 465

Query: 286 CSDIIAAKDIFGR--MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA--GVKPNEVT 341
           C    AA+ IF    +  ++VV+WT +I G AQ+G + + L L+ EM+S   GV PN  T
Sbjct: 466 CRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYT 525

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY-TCLLDLLSRSGHLDEAENLIKA 400
              ++ AC+H+  +  G+++   ++  +    S      CL+D+ S+ G +D A ++  +
Sbjct: 526 ISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDS 585

Query: 401 MPFEPDEPTWAALLSA-CKHHRNTE 424
           M  +    +W ++++    H R +E
Sbjct: 586 MS-QKSAISWTSMMTGYGMHGRGSE 609



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 139/629 (22%), Positives = 250/629 (39%), Gaps = 148/629 (23%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYG--------------------PLPNT 43
           SH+   L+ C   + A TV  +H QII  GL                         L   
Sbjct: 45  SHFASLLKEC---KSANTVHQIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSLGTG 101

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           ++ +Y  C    YA  +LE +     V W  ++  + +       I++   ML     +P
Sbjct: 102 VVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGT-RP 160

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           DHF    ++KACG L + R G   H     + F  +  + ++LV MY++CG    A  +F
Sbjct: 161 DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 220

Query: 164 DSIK---LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
           D I    + + +SW +++SA+ +S     A+++F +                        
Sbjct: 221 DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSK------------------------ 256

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
              + I   +   +  D + + +I+ AC +   +   K++HG  I  G    +F+ NA++
Sbjct: 257 --MTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALI 314

Query: 281 DMYAKCS---------------DII----------------AAKDIFGRMRRK----DVV 305
           D YAKC                D++                AA ++F  MR++    DVV
Sbjct: 315 DAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVV 374

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL---- 361
           +WT++I G +Q G + E L L+ +M+ +G  PN VT + ++ AC+ +G   +G ++    
Sbjct: 375 TWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTIISVLSACASLGAFSQGTEIHAYS 434

Query: 362 ----FKSMIEDY-GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE------------ 404
                 ++  D+ G    L  Y  L+D+ S+      A ++   +P E            
Sbjct: 435 LKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 494

Query: 405 --------------------------PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
                                     P+  T + +L AC H     +G ++  ++L    
Sbjct: 495 GHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHR 554

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
            + S+Y + + +    +    V   R +   M  K    ++ +  G G H    G  S  
Sbjct: 555 YESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMH----GRGSEA 610

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVL 527
           L  +IF+       +M++ G+VPD  + L
Sbjct: 611 L--DIFD-------KMRKAGFVPDDITFL 630



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 136/351 (38%), Gaps = 68/351 (19%)

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLS--------------------PFCDDDVV 142
           P HF  ASL+K C S        Q+H   + S                    PF     +
Sbjct: 44  PSHF--ASLLKECKSANTVH---QIHQQIIASGLLSLPTPLLSVSLPALPSEPFISPRSL 98

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            + +V  Y  CG  + A  V + +    +V W  ++  + + GR   A+ +         
Sbjct: 99  GTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVS-------- 150

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                    M R G    D   L  ++ AC        G   HG
Sbjct: 151 -----------------------CRMLRAGTR-PDHFTLPHVLKACGELPSYRCGSAFHG 186

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK---DVVSWTSIIVGTAQHGQ 319
           L+   G+ES +FI NA+V MY++C  +  A  IF  + ++   DV+SW SI+    +   
Sbjct: 187 LICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSN 246

Query: 320 AEETLALYDEMV------SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
           A   L L+ +M           + + ++ V ++ AC  +  V + +++  + I + G  P
Sbjct: 247 AWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRN-GTFP 305

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
            +     L+D  ++ G ++ A  +   M F+ D  +W A+++      N E
Sbjct: 306 DVFVGNALIDAYAKCGLMENAVKVFNMMEFK-DVVSWNAMVAGYSQSGNFE 355


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 231/602 (38%), Positives = 347/602 (57%), Gaps = 34/602 (5%)

Query: 10   LRVCARHQIALTVKT-LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
            LR C+  +    + T +HA  +K G+     +   LID Y K   ++ A  L       D
Sbjct: 1043 LRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFD 1102

Query: 69   HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
              SW +I+  Y  +    K + ++  M    + + D     +  KA G L   + GKQ+H
Sbjct: 1103 LASWNAIMHGYIVSGDFPKALRLYILMQESGE-RSDQITLVNAAKAAGGLVGLKQGKQIH 1161

Query: 129  ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
            A  V   F  D  V S ++DMY KCG   +AR                            
Sbjct: 1162 AVVVKRGFNLDLFVTSGVLDMYLKCGEMESAR---------------------------- 1193

Query: 189  DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
                +F + P  +   WT ++SG V++  E  A +++ +MR   V   D    +++V AC
Sbjct: 1194 ---RVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQ-PDEYTFATLVKAC 1249

Query: 249  ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
            +    LE G+QIH  ++ L      F+  ++VDMYAKC +I  A+ +F R   + + SW 
Sbjct: 1250 SLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWN 1309

Query: 309  SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            ++IVG AQHG A+E L  +  M S GV P+ VTF+G++ ACSH GLV +  + F SM ++
Sbjct: 1310 AMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKN 1369

Query: 369  YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
            YGI P ++HY+CL+D LSR+G ++EAE +I +MPFE     +  LL+AC+   + E G R
Sbjct: 1370 YGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKR 1429

Query: 429  VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            VA  LL+L+P D ++Y+LLSNVYA+A  W++V+  R +M  + VKK+PG+S+++     H
Sbjct: 1430 VAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVH 1489

Query: 489  IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            +F AG+ SH   D I+  +  +   ++  GYVPDT   L D+E+++KE  L++HSE+LA+
Sbjct: 1490 LFVAGDRSHEETDVIYNKVEYIMKRIREEGYVPDTDFALVDVEEEDKECSLYYHSEKLAI 1549

Query: 549  AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
            AYGL+K+ P T LRV+KNLRVCGDCH  +K IS++ KREIV+RDA R+HHF++G CSC D
Sbjct: 1550 AYGLMKTPPSTTLRVIKNLRVCGDCHSAIKYISKVFKREIVLRDANRFHHFRNGICSCGD 1609

Query: 609  FW 610
            +W
Sbjct: 1610 YW 1611



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 201/404 (49%), Gaps = 38/404 (9%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            K +H  +++ GL Q   + N LI+ Y K   V  A  +  +M + D +SW ++++    +
Sbjct: 955  KQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLS 1014

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSL-GATRLGKQVHACFVLSPFCDDDV 141
             L + ++ +F  +L  D L PD F  AS+++AC SL G   L  Q+HAC + +    D  
Sbjct: 1015 GLEECSVGMFVHLLR-DSLLPDQFTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSF 1073

Query: 142  VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
            V ++L+D+Y+K G    A  +F +    +  SW A++  Y  SG    A+ +        
Sbjct: 1074 VSTALIDVYSKRGKMEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRL-------- 1125

Query: 202  LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                                   +I M+  G +  D + L +   A      L+ GKQIH
Sbjct: 1126 -----------------------YILMQESG-ERSDQITLVNAAKAAGGLVGLKQGKQIH 1161

Query: 262  GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             +V+  G+   LF+++ ++DMY KC ++ +A+ +F  +   D V+WT++I G  ++GQ E
Sbjct: 1162 AVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEE 1221

Query: 322  ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-DYGITPSLQHYTC 380
              L  Y +M  + V+P+E TF  L+ ACS +  + +GR++  ++++ +    P +   T 
Sbjct: 1222 HALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVM--TS 1279

Query: 381  LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
            L+D+ ++ G++++A  L K         +W A++     H N +
Sbjct: 1280 LVDMYAKCGNIEDARGLFKRTNTRR-IASWNAMIVGLAQHGNAK 1322



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 118/469 (25%), Positives = 200/469 (42%), Gaps = 66/469 (14%)

Query: 4    SHYLHRLRVC---ARHQIALTVKTL----HAQIIKLGLHQYGPLPNTLIDAYGKCDLVQY 56
            +H +H L  C    R  IA +  +L    HA+I+  G H    + N LI  Y KC  +  
Sbjct: 650  AHLIHSLPQCFSILRQAIAASDLSLGKRAHARILTSGHHPDRFVTNNLITMYAKCGSLSS 709

Query: 57   AHHLLEEMP--QRDHVSWASILTAYN-QANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
            A  L +  P   RD V+W +IL+A    A+       +F  +L    +       A + K
Sbjct: 710  ARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFR-LLRRSVVSTTRHTLAPVFK 768

Query: 114  ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS 173
             C    +    + +H   V      D  V  +LV++YAK GL   AR +FD + +++ V 
Sbjct: 769  MCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVLFDGMAVRDVVL 828

Query: 174  WTAMLSAYARSGRKKDAMEIFEQ---------------------------------APVR 200
            W  M+ AY  +  + +AM +F +                                 A   
Sbjct: 829  WNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNILELKQFKAYAT 888

Query: 201  NLFL----------WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
             LF+          W   +S  +Q     +A   F++M    V   D L    ++   A 
Sbjct: 889  KLFMYDDDGSDVIVWNKALSRFLQRGEAWEAVDCFVDMINSRV-ACDGLTFVVMLTVVAG 947

Query: 251  FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
               LELGKQIHG+V+  G +  + + N +++MY K   +  A+ +FG+M   D++SW ++
Sbjct: 948  LNCLELGKQIHGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTM 1007

Query: 311  IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE--- 367
            I G    G  E ++ ++  ++   + P++ T   ++ ACS +    +G     + I    
Sbjct: 1008 ISGCTLSGLEECSVGMFVHLLRDSLLPDQFTVASVLRACSSL----EGGYYLATQIHACA 1063

Query: 368  -DYGITPSLQHYTCLLDLLSRSGHLDEAENL-IKAMPFEPDEPTWAALL 414
               G+       T L+D+ S+ G ++EAE L +    F  D  +W A++
Sbjct: 1064 MKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGF--DLASWNAIM 1110



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 92/387 (23%), Positives = 161/387 (41%), Gaps = 39/387 (10%)

Query: 68   DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
            D + W   L+ + Q     + +  F  M+   ++  D   F  ++     L    LGKQ+
Sbjct: 899  DVIVWNKALSRFLQRGEAWEAVDCFVDMIN-SRVACDGLTFVVMLTVVAGLNCLELGKQI 957

Query: 128  HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
            H   + S       V + L++MY K G  + AR+VF  +   + +SW  M+S    SG  
Sbjct: 958  HGIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSG-- 1015

Query: 188  KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
                   E+  V           G+            F+ + R+ + + D   ++S++ A
Sbjct: 1016 ------LEECSV-----------GM------------FVHLLRDSL-LPDQFTVASVLRA 1045

Query: 248  CANF-AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
            C++      L  QIH   +  G     F+S A++D+Y+K   +  A+ +F      D+ S
Sbjct: 1046 CSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFVNQDGFDLAS 1105

Query: 307  WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG-KGRKLFKSM 365
            W +I+ G    G   + L LY  M  +G + +++T V    A    GLVG K  K   ++
Sbjct: 1106 WNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAG--GLVGLKQGKQIHAV 1163

Query: 366  IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
            +   G    L   + +LD+  + G ++ A  +   +P  PD+  W  ++S C  +   E 
Sbjct: 1164 VVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIP-SPDDVAWTTMISGCVENGQEEH 1222

Query: 426  GTRVANHLLSLKPEDPSSYILLSNVYA 452
                  H + L    P  Y   + V A
Sbjct: 1223 AL-FTYHQMRLSKVQPDEYTFATLVKA 1248


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/601 (38%), Positives = 345/601 (57%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C         + +H Q+IK G      + + LID Y K   +  A  +L+ + + D 
Sbjct: 422 LRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDV 481

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++  Y Q +L  + + +F  M     ++ D+  F+S + AC  + A   G+Q+HA
Sbjct: 482 VSWTAMIAGYTQHDLFAEALKLFQEM-ENQGIRSDNIGFSSAISACAGIQALNQGQQIHA 540

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
              +S + +D  + ++LV                               S YAR GR +D
Sbjct: 541 QSYISGYSEDLSIGNALV-------------------------------SLYARCGRAQD 569

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A   FE+   ++   W AL+SG  QS +  +A   F +M + GV+  +     S V A A
Sbjct: 570 AYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVE-ANLFTFGSAVSATA 628

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           N A ++ GKQIH ++I  GY+S    SN ++ +Y+KC  I  AK  F  M  K+VVSW +
Sbjct: 629 NTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVSWNA 688

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G +QHG   E ++L++EM   G+ PN VTFVG++ ACSHVGLV +G   F+SM +++
Sbjct: 689 MITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMSKEH 748

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G+ P  +HY C++DLL R+  L  A   I+ MP EPD   W  LLSAC  H+N E+G   
Sbjct: 749 GLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIGEFA 808

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A HLL L+PED ++Y+LLSN+YA +  W +  + R++M    VKKEPG S+IE     H 
Sbjct: 809 ARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWIEVKNSIHA 868

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F+ G+  HPL ++I+E + +L+      GYV D  ++L+D+EQ++K+   + HSE+LAVA
Sbjct: 869 FFVGDRLHPLAEQIYEYIDDLNERAGEIGYVQDRYNLLNDVEQEQKDPTAYIHSEKLAVA 928

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GLL       +RV+KNLRVC DCH  +K +S+I+ R IVVRDA R+HHF+ G CSC D+
Sbjct: 929 FGLLSLTNTMPIRVIKNLRVCNDCHNWIKFVSKISNRAIVVRDAYRFHHFEGGVCSCKDY 988

Query: 610 W 610
           W
Sbjct: 989 W 989



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 152/599 (25%), Positives = 270/599 (45%), Gaps = 96/599 (16%)

Query: 2   QISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
            +  YL     C      L  K LHA+I K G      L + LID Y     V  A  L 
Sbjct: 9   NVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLF 68

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC-GSLGA 120
           +++P  +   W  +++      L  + + +FS M+  + + PD   FAS+++AC G    
Sbjct: 69  DDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMIT-ENVTPDESTFASVLRACSGGKAP 127

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
            ++ +Q+HA  +   F    +V + L+D+Y+K G  + A+ VF+ + LK+SVS       
Sbjct: 128 FQVTEQIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVS------- 180

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
                                   W A++SGL Q+  E +A   F +M +  V I  P V
Sbjct: 181 ------------------------WVAMISGLSQNGREDEAILLFCQMHKSAV-IPTPYV 215

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
            SS++ AC    + +LG+Q+HG ++  G  S  F+ NA+V +Y++  ++IAA+ IF +M 
Sbjct: 216 FSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMH 275

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
           R+D +S+ S+I G AQ G ++  L L+++M    +KP+ VT   L+ AC+ VG   KG++
Sbjct: 276 RRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQ 335

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRS-------------------------------G 389
           L   +I+  G++  L     LLDL  +                                G
Sbjct: 336 LHSYVIK-MGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLG 394

Query: 390 HLDEAENLIKAMPFE---PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYIL 446
           +L E+  +   M  E   P++ T+ ++L  C      ++G ++   ++       S +  
Sbjct: 395 NLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVI------KSGFQF 448

Query: 447 LSNVYASAAMWQHVSKVRKLMS----VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
             NVY  + +    +K  +L +    +  +++E   S+           AG T H L  E
Sbjct: 449 --NVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTA-------MIAGYTQHDLFAE 499

Query: 503 IFELLTELDAEMKRRGYVPDTSSV--------LHDMEQKEKERQLFWHSERLAVAYGLL 553
             +L  E++ +  R   +  +S++        L+  +Q   +  +  +SE L++   L+
Sbjct: 500 ALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALV 558



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 117/429 (27%), Positives = 207/429 (48%), Gaps = 45/429 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C + ++    + LH  I+K GL     + N L+  Y +   +  A  +  +M +RD 
Sbjct: 220 LSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDR 279

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +S+ S+++   Q     + + +F  M  LD ++PD    ASL+ AC S+GA   GKQ+H+
Sbjct: 280 ISYNSLISGLAQRGFSDRALQLFEKM-QLDCMKPDCVTVASLLSACASVGAGYKGKQLHS 338

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +      D +++ SL+D+Y KC         FD                       + 
Sbjct: 339 YVIKMGMSSDLIIEGSLLDLYVKC---------FDI----------------------ET 367

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A E F      N+ LW  ++    Q  N  ++++ F++M+ EG+ + +     SI+  C 
Sbjct: 368 AHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGL-MPNQYTYPSILRTCT 426

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +   L+LG+QIH  VI  G++  +++ + ++DMYAK  ++  A+ I  R+R +DVVSWT+
Sbjct: 427 SLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTA 486

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF-KSMIED 368
           +I G  QH    E L L+ EM + G++ + + F   I AC+ +  + +G+++  +S I  
Sbjct: 487 MIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISG 546

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE----PDEPTWAALLSACKHHRNTE 424
           Y  +  L     L+ L +R G   +A      + FE     D  +W AL+S      + E
Sbjct: 547 Y--SEDLSIGNALVSLYARCGRAQDA-----YLAFEKIDAKDNISWNALISGFAQSGHCE 599

Query: 425 MGTRVANHL 433
              +V + +
Sbjct: 600 EALQVFSQM 608


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 239/608 (39%), Positives = 347/608 (57%), Gaps = 36/608 (5%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S+Y   L+ C   +     K LHAQ+   G      +   L++ Y  CD +  A  L + 
Sbjct: 76  SNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDR 135

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           +P+ +   W  ++  Y      +  + ++  M     L PD+F F  ++KAC +L A   
Sbjct: 136 IPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYG-LVPDNFTFPFVLKACAALSAIEH 194

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G+++H   V + +  D  V ++L+DMYAKCG   +AR                       
Sbjct: 195 GREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAR----------------------- 231

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI-EMRREGVDIVDPLVLS 242
                   E+F++  VR+  LW ++++   Q+ +  DA  S   EM   G+   +  +++
Sbjct: 232 --------EVFDKILVRDAVLWNSMLAAYSQNGHP-DACLSLCSEMVLTGLRPTEATLVT 282

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           +I  A A+ A L  G+++HGL     +ES   +  A+VDMYAKC  +  A+++F R+  K
Sbjct: 283 AI-SASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERLGVK 341

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
            VVSW ++I G A HG A E L L++EM     KP+ +TFVG++ ACSH GL+ +G   F
Sbjct: 342 RVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KPDHITFVGVLSACSHGGLLEEGWMFF 400

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
           ++MI DY I P++QHYTC++DLL  SG LDEA NLI  M   PD   W ALL++CK H N
Sbjct: 401 ETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGALLNSCKIHAN 460

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
            E+G      L+ L+P+D  +Y++LSN+YA A  W+ V+K+RKLM+   +KK    S+IE
Sbjct: 461 VELGEIALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDRRLKKSIACSWIE 520

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWH 542
                H F +G+TSHPL DEI+  L  +   MK  GY P T SV HD+E  EK   +  H
Sbjct: 521 VKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEAGYSPSTGSVFHDVEDDEKANMVCSH 580

Query: 543 SERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           SERLA+A+GL+ + PGT L + KNLR+C DCH+ +K IS+IT+REI VRD  RYHHFKDG
Sbjct: 581 SERLAIAFGLISTPPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFKDG 640

Query: 603 KCSCNDFW 610
            CSC D+W
Sbjct: 641 VCSCGDYW 648



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 101/358 (28%), Positives = 174/358 (48%), Gaps = 64/358 (17%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           L P +  +ASL+++C +  A + GKQ+HA   L+ F  D V+ + LV++Y  C   ++AR
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            +FD I   N   W  ++  YA +G  + A++++ Q     +F +     GLV       
Sbjct: 131 LLFDRIPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQ-----MFDY-----GLVPDN---- 176

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
             ++F            P VL     ACA  + +E G++IH  V+  G+E  +F+  A++
Sbjct: 177 --FTF------------PFVLK----ACAALSAIEHGREIHEHVVQTGWEKDVFVGAALI 218

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           DMYAKC  + +A+++F ++  +D V W S++   +Q+G  +  L+L  EMV  G++P E 
Sbjct: 219 DMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLTGLRPTEA 278

Query: 341 TFVGLIYACSHVGLVGKGRKL--------FKS-------MIEDYGITPSLQ--------- 376
           T V  I A +    + +GR+L        F+S       +++ Y    S++         
Sbjct: 279 TLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVARNLFERL 338

Query: 377 ------HYTCLLDLLSRSGHLDEAENLIKAMP--FEPDEPTWAALLSACKHHRNTEMG 426
                  +  ++   +  GH  EA +L + M    +PD  T+  +LSAC H    E G
Sbjct: 339 GVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVAKPDHITFVGVLSACSHGGLLEEG 396


>gi|357521591|ref|XP_003631084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525106|gb|AET05560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 980

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/569 (38%), Positives = 341/569 (59%), Gaps = 10/569 (1%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+  + +   +  A  L ++MP RD +SW ++++ Y Q     +   +F         
Sbjct: 208 NCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE------- 260

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P   VF       G +    L  +    F   P   ++V  ++++  Y +    + AR 
Sbjct: 261 SPTRDVFTWTAMVSGYVQNGML-DEAKTFFDEMPE-KNEVSYNAMIAGYVQTKKMDIARE 318

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F+S+  +N  SW  M++ Y + G    A + F+  P R+   W A+++G  QS +  +A
Sbjct: 319 LFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEA 378

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F+E++++G + ++       +  CA+ A LELGKQIHG  + +GY +  F+ NA++ 
Sbjct: 379 LNMFVEIKQDG-ESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLA 437

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  I  A D F  +  KDVVSW +++ G A+HG   + L +++ M +AGVKP+E+T
Sbjct: 438 MYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEIT 497

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
            VG++ ACSH GL+ +G + F SM +DYG+ P+ +HYTC++DLL R+G L+EA++LI+ M
Sbjct: 498 MVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNM 557

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           PF+P   +W ALL A + H NTE+G + A  +  ++P++   Y+LLSN+YA++  W    
Sbjct: 558 PFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDAD 617

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           K+R  M  + V+K PGYS++E     H F  G+ SHP K+ I+  L ELD +M+  GYV 
Sbjct: 618 KMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVS 677

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
            T  VLHD+E++EKE  L +HSE+LAVA+G+L    G  +RV+KNLRVC DCH  +K IS
Sbjct: 678 LTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHIS 737

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I  R I++RD+ R+HHF +G CSC D+W
Sbjct: 738 KIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 159/666 (23%), Positives = 266/666 (39%), Gaps = 151/666 (22%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K +H Q +K+G      + N L+  Y KC  +  A+   E + ++D 
Sbjct: 401 LSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDV 460

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW ++L  Y +    ++ +++F +M     ++PD      ++ AC   G    G +   
Sbjct: 461 VSWNTMLAGYARHGFGRQALTVFESMKTAG-VKPDEITMVGVLSACSHTGLLDRGTE--- 516

Query: 130 CFVLSPFCDDDVVKSS-----LVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYAR 183
            +  S   D  V+ +S     ++D+  + G    A+ +  ++  +  + SW A+L A   
Sbjct: 517 -YFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRI 575

Query: 184 SGR----KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
            G     +K A  +F+  P +N  ++  L +    S   +DA     +MR  GV  V   
Sbjct: 576 HGNTELGEKAAEMVFKMEP-QNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKV--- 631

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
                      ++ +E+  +IH   +      C       +  Y +  D+        +M
Sbjct: 632 ---------PGYSWVEVQNKIHTFSVG----DCSHPEKERIYAYLEELDL--------KM 670

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA--------GVKPNEV----------- 340
           R +  VS T +++   +  + E  L  + E ++         G +P  V           
Sbjct: 671 REEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCH 730

Query: 341 -------TFVGLIYA--------------CS--------------HVGLVGKGRKLFKSM 365
                    VG +                CS              + GL+  G + F  M
Sbjct: 731 SAIKHISKIVGRLIILRDSHRFHHFNEGFCSCGDYWLQFFLLVVIYTGLLDTGAEYFYPM 790

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
            E+Y +TP+ +HYTC++DLL R   L+E                  ALL A + H NTE+
Sbjct: 791 NEEYSVTPTSKHYTCMIDLLGRVDRLEE-----------------GALLGASRIHGNTEL 833

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G + A     + P++                   +SK+R +     V+K PGYS+ E   
Sbjct: 834 GEKAAQMFFKMGPQNSG-----------------ISKMRDV----GVQKVPGYSWFEVQN 872

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H F  G      ++ I   L ELD +M+                ++EKER L + SE 
Sbjct: 873 KIHTFSVGLFLSRERENI-GFLEELDLKMR--------------EREEEKERTLKYLSEN 917

Query: 546 LAVAYGLLKSVPGTVLRVVKN-LRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           LA A G+L    G   RV+K  + VC DC   +K +S+I  R I +RD+   H F +  C
Sbjct: 918 LAAALGILTIPVGRPNRVMKKRVYVCEDCRSAIKHMSKIVGRLITLRDS---HRFNESIC 974

Query: 605 SCNDFW 610
           SC ++W
Sbjct: 975 SCGEYW 980



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 183/385 (47%), Gaps = 32/385 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N ++  Y +   +  A  L + MP++D VSW S+L+ Y Q     +   +F  M   + +
Sbjct: 115 NVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSI 174

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNAR 160
             +  + A +            G+   AC +     D D++  + L+  + +     +AR
Sbjct: 175 SWNGLLAAYVHN----------GRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDAR 224

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            +FD + +++++SW  M+S YA+ G    A  +F+++P R++F WTA+VSG VQ+    +
Sbjct: 225 WLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDE 284

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES--CLFIS-- 276
           A   F EM  +     + +  ++++        +++ +++        +ES  C  IS  
Sbjct: 285 AKTFFDEMPEK-----NEVSYNAMIAGYVQTKKMDIAREL--------FESMPCRNISSW 331

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
           N ++  Y +  DI  A+  F  M ++D VSW +II G AQ G  EE L ++ E+   G  
Sbjct: 332 NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGES 391

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-DYGITPSLQHYTCLLDLLSRSGHLDEAE 395
            N  TF   +  C+ +  +  G+++    ++  YG    + +   LL +  + G +DEA 
Sbjct: 392 LNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGN--ALLAMYFKCGSIDEAN 449

Query: 396 NLIKAMPFEPDEPTWAALLSACKHH 420
           +  + +  E D  +W  +L+    H
Sbjct: 450 DTFEGIE-EKDVVSWNTMLAGYARH 473



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 163/369 (44%), Gaps = 64/369 (17%)

Query: 49  GKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVF 108
           G CD    A H+   MP+R  VS+ ++++ Y + +      ++F  M       P+  +F
Sbjct: 63  GHCD---SALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQM-------PERDLF 112

Query: 109 ASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNARAVFDSIK 167
           +  V   G +   RLG      F L P  + DVV  +SL+  YA+ G  + AR VFD++ 
Sbjct: 113 SWNVMLTGYVRNCRLG-DARRLFDLMP--EKDVVSWNSLLSGYAQNGYVDEAREVFDNMP 169

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            KNS+SW  +L+AY  +GR ++A  +FE     +L  W  L+ G V+ +   DA + F +
Sbjct: 170 EKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDK 229

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M      + D +                                     N ++  YA+  
Sbjct: 230 M-----PVRDAISW-----------------------------------NTMISGYAQGG 249

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            +  A+ +F     +DV +WT+++ G  Q+G  +E    +DEM     + NEV++  +I 
Sbjct: 250 GLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIA 305

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
                  +   R+LF+SM        ++  +  ++    + G + +A      MP + D 
Sbjct: 306 GYVQTKKMDIARELFESM-----PCRNISSWNTMITGYGQIGDIAQARKFFDMMP-QRDC 359

Query: 408 PTWAALLSA 416
            +WAA+++ 
Sbjct: 360 VSWAAIIAG 368



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/307 (21%), Positives = 141/307 (45%), Gaps = 43/307 (14%)

Query: 138 DDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           D D++K +  +  + + G  ++A  VF+++  ++SVS+ AM+S Y R+ +   A  +F+Q
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
            P R+LF W  +++G V++    DA   F  M  +     D +  +S++   A    ++ 
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEK-----DVVSWNSLLSGYAQNGYVDE 160

Query: 257 GKQI------------HGLVIALGY-----ESCLFIS----------NAIVDMYAKCSDI 289
            +++            +GL+ A  +     E+CL             N ++  + +   +
Sbjct: 161 AREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKL 220

Query: 290 IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349
             A+ +F +M  +D +SW ++I G AQ G   +   L+DE  +  V     T+  ++   
Sbjct: 221 GDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVSGY 276

Query: 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
              G++ + +  F  M E   ++     Y  ++    ++  +D A  L ++MP   +  +
Sbjct: 277 VQNGMLDEAKTFFDEMPEKNEVS-----YNAMIAGYVQTKKMDIARELFESMPCR-NISS 330

Query: 410 WAALLSA 416
           W  +++ 
Sbjct: 331 WNTMITG 337


>gi|92870988|gb|ABE80149.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 766

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/569 (38%), Positives = 341/569 (59%), Gaps = 10/569 (1%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+  + +   +  A  L ++MP RD +SW ++++ Y Q     +   +F         
Sbjct: 208 NCLMGGFVRKKKLGDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDE------- 260

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P   VF       G +    L  +    F   P   ++V  ++++  Y +    + AR 
Sbjct: 261 SPTRDVFTWTAMVSGYVQNGML-DEAKTFFDEMPE-KNEVSYNAMIAGYVQTKKMDIARE 318

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F+S+  +N  SW  M++ Y + G    A + F+  P R+   W A+++G  QS +  +A
Sbjct: 319 LFESMPCRNISSWNTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEA 378

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F+E++++G + ++       +  CA+ A LELGKQIHG  + +GY +  F+ NA++ 
Sbjct: 379 LNMFVEIKQDG-ESLNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLA 437

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  I  A D F  +  KDVVSW +++ G A+HG   + L +++ M +AGVKP+E+T
Sbjct: 438 MYFKCGSIDEANDTFEGIEEKDVVSWNTMLAGYARHGFGRQALTVFESMKTAGVKPDEIT 497

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
            VG++ ACSH GL+ +G + F SM +DYG+ P+ +HYTC++DLL R+G L+EA++LI+ M
Sbjct: 498 MVGVLSACSHTGLLDRGTEYFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNM 557

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           PF+P   +W ALL A + H NTE+G + A  +  ++P++   Y+LLSN+YA++  W    
Sbjct: 558 PFQPGAASWGALLGASRIHGNTELGEKAAEMVFKMEPQNSGMYVLLSNLYAASGRWVDAD 617

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           K+R  M  + V+K PGYS++E     H F  G+ SHP K+ I+  L ELD +M+  GYV 
Sbjct: 618 KMRSKMRDIGVQKVPGYSWVEVQNKIHTFSVGDCSHPEKERIYAYLEELDLKMREEGYVS 677

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
            T  VLHD+E++EKE  L +HSE+LAVA+G+L    G  +RV+KNLRVC DCH  +K IS
Sbjct: 678 LTKLVLHDVEEEEKEHMLKYHSEKLAVAFGILTIPGGRPIRVMKNLRVCEDCHSAIKHIS 737

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I  R I++RD+ R+HHF +G CSC D+W
Sbjct: 738 KIVGRLIILRDSHRFHHFNEGFCSCGDYW 766



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 183/385 (47%), Gaps = 32/385 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N ++  Y +   +  A  L + MP++D VSW S+L+ Y Q     +   +F  M   + +
Sbjct: 115 NVMLTGYVRNCRLGDARRLFDLMPEKDVVSWNSLLSGYAQNGYVDEAREVFDNMPEKNSI 174

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNAR 160
             +  + A +            G+   AC +     D D++  + L+  + +     +AR
Sbjct: 175 SWNGLLAAYVHN----------GRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDAR 224

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            +FD + +++++SW  M+S YA+ G    A  +F+++P R++F WTA+VSG VQ+    +
Sbjct: 225 WLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDE 284

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES--CLFIS-- 276
           A   F EM  +     + +  ++++        +++ +++        +ES  C  IS  
Sbjct: 285 AKTFFDEMPEK-----NEVSYNAMIAGYVQTKKMDIAREL--------FESMPCRNISSW 331

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
           N ++  Y +  DI  A+  F  M ++D VSW +II G AQ G  EE L ++ E+   G  
Sbjct: 332 NTMITGYGQIGDIAQARKFFDMMPQRDCVSWAAIIAGYAQSGHYEEALNMFVEIKQDGES 391

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-DYGITPSLQHYTCLLDLLSRSGHLDEAE 395
            N  TF   +  C+ +  +  G+++    ++  YG    + +   LL +  + G +DEA 
Sbjct: 392 LNRATFGCALSTCADIAALELGKQIHGQAVKMGYGTGCFVGN--ALLAMYFKCGSIDEAN 449

Query: 396 NLIKAMPFEPDEPTWAALLSACKHH 420
           +  + +  E D  +W  +L+    H
Sbjct: 450 DTFEGIE-EKDVVSWNTMLAGYARH 473



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 163/369 (44%), Gaps = 64/369 (17%)

Query: 49  GKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVF 108
           G CD    A H+   MP+R  VS+ ++++ Y + +      ++F  M       P+  +F
Sbjct: 63  GHCD---SALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQM-------PERDLF 112

Query: 109 ASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNARAVFDSIK 167
           +  V   G +   RLG      F L P  + DVV  +SL+  YA+ G  + AR VFD++ 
Sbjct: 113 SWNVMLTGYVRNCRLG-DARRLFDLMP--EKDVVSWNSLLSGYAQNGYVDEAREVFDNMP 169

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            KNS+SW  +L+AY  +GR ++A  +FE     +L  W  L+ G V+ +   DA + F +
Sbjct: 170 EKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKLGDARWLFDK 229

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M      + D +                                     N ++  YA+  
Sbjct: 230 M-----PVRDAISW-----------------------------------NTMISGYAQGG 249

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            +  A+ +F     +DV +WT+++ G  Q+G  +E    +DEM     + NEV++  +I 
Sbjct: 250 GLSQARRLFDESPTRDVFTWTAMVSGYVQNGMLDEAKTFFDEM----PEKNEVSYNAMIA 305

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
                  +   R+LF+SM        ++  +  ++    + G + +A      MP + D 
Sbjct: 306 GYVQTKKMDIARELFESM-----PCRNISSWNTMITGYGQIGDIAQARKFFDMMP-QRDC 359

Query: 408 PTWAALLSA 416
            +WAA+++ 
Sbjct: 360 VSWAAIIAG 368



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 135/293 (46%), Gaps = 42/293 (14%)

Query: 138 DDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           D D++K +  +  + + G  ++A  VF+++  ++SVS+ AM+S Y R+ +   A  +F+Q
Sbjct: 46  DPDILKWNKAISTHMRNGHCDSALHVFNTMPRRSSVSYNAMISGYLRNSKFNLARNLFDQ 105

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
            P R+LF W  +++G V++    DA   F  M  +     D +  +S++   A    ++ 
Sbjct: 106 MPERDLFSWNVMLTGYVRNCRLGDARRLFDLMPEK-----DVVSWNSLLSGYAQNGYVDE 160

Query: 257 GKQI------------HGLVIALGY-----ESCLFIS----------NAIVDMYAKCSDI 289
            +++            +GL+ A  +     E+CL             N ++  + +   +
Sbjct: 161 AREVFDNMPEKNSISWNGLLAAYVHNGRIEEACLLFESKSDWDLISWNCLMGGFVRKKKL 220

Query: 290 IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349
             A+ +F +M  +D +SW ++I G AQ G   +   L+DE  +  V     T+  ++   
Sbjct: 221 GDARWLFDKMPVRDAISWNTMISGYAQGGGLSQARRLFDESPTRDV----FTWTAMVSGY 276

Query: 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
              G++ + +  F  M E   ++     Y  ++    ++  +D A  L ++MP
Sbjct: 277 VQNGMLDEAKTFFDEMPEKNEVS-----YNAMIAGYVQTKKMDIARELFESMP 324



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 70/333 (21%), Positives = 136/333 (40%), Gaps = 40/333 (12%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K +H Q +K+G      + N L+  Y KC  +  A+   E + ++D 
Sbjct: 401 LSTCADIAALELGKQIHGQAVKMGYGTGCFVGNALLAMYFKCGSIDEANDTFEGIEEKDV 460

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW ++L  Y +    ++ +++F +M     ++PD      ++ AC   G    G +   
Sbjct: 461 VSWNTMLAGYARHGFGRQALTVFESMKTAG-VKPDEITMVGVLSACSHTGLLDRGTE--- 516

Query: 130 CFVLSPFCDDDVVKSS-----LVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYAR 183
            +  S   D  V+ +S     ++D+  + G    A+ +  ++  +  + SW A+L A   
Sbjct: 517 -YFYSMTKDYGVIPTSKHYTCMIDLLGRAGRLEEAQDLIRNMPFQPGAASWGALLGASRI 575

Query: 184 SGR----KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
            G     +K A  +F+  P +N  ++  L +    S   +DA     +MR  GV  V   
Sbjct: 576 HGNTELGEKAAEMVFKMEP-QNSGMYVLLSNLYAASGRWVDADKMRSKMRDIGVQKV--- 631

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
                      ++ +E+  +IH   +      C       +  Y +  D+        +M
Sbjct: 632 ---------PGYSWVEVQNKIHTFSVG----DCSHPEKERIYAYLEELDL--------KM 670

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           R +  VS T +++   +  + E  L  + E ++
Sbjct: 671 REEGYVSLTKLVLHDVEEEEKEHMLKYHSEKLA 703


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/587 (38%), Positives = 347/587 (59%), Gaps = 3/587 (0%)

Query: 25  LHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           +H    K G     P + + LI  Y  C  +  A  L ++M  RD V+W  ++  Y+Q  
Sbjct: 137 IHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNA 196

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
                + ++  M      +PD  +  +++ AC   G    GK +H     + F     ++
Sbjct: 197 HYDHVLKLYEEM-KTSGTEPDAIILCTVLSACAHAGNLSYGKAIHQFIKDNGFRVGSHIQ 255

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           +SLV+MYA CG  + AR V+D +  K+ V  TAMLS YA+ G  +DA  IF++   ++L 
Sbjct: 256 TSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGMVQDARFIFDRMVEKDLV 315

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            W+A++SG  +S   ++A   F EM+R  + + D + + S++ ACAN   L   K IH  
Sbjct: 316 CWSAMISGYAESYQPLEALQLFNEMQRRRI-VPDQITMLSVISACANVGALVQAKWIHTY 374

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
               G+   L I+NA++DMYAKC +++ A+++F  M RK+V+SW+S+I   A HG A+  
Sbjct: 375 ADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNVISWSSMINAFAMHGDADSA 434

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           +AL+  M    ++PN VTF+G++YACSH GLV +G+K F SMI ++ I+P  +HY C++D
Sbjct: 435 IALFHRMKEQNIEPNGVTFIGVLYACSHAGLVEEGQKFFSSMINEHRISPQREHYGCMVD 494

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           L  R+ HL +A  LI+ MPF P+   W +L+SAC++H   E+G   A  LL L+P+   +
Sbjct: 495 LYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNHGEIELGEFAATRLLELEPDHDGA 554

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
            ++LSN+YA    W  V  VRKLM    V KE   S IE     H+F   +  H   DEI
Sbjct: 555 LVVLSNIYAKEKRWDDVGLVRKLMKHKGVSKEKACSRIEVNNEVHVFMMADRYHKQSDEI 614

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
           ++ L  + +++K  GY P TS +L D+E++EK+  + WHSE+LA+ YGL+     + +R+
Sbjct: 615 YKKLDAVVSQLKLVGYTPSTSGILVDLEEEEKKEVVLWHSEKLALCYGLIGERKESCIRI 674

Query: 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           VKNLR+C DCH  MK++S++ + EIV+RD TR+HHF  G CSC D+W
Sbjct: 675 VKNLRICEDCHSFMKLVSKVHRIEIVMRDRTRFHHFNGGICSCRDYW 721



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/478 (22%), Positives = 205/478 (42%), Gaps = 93/478 (19%)

Query: 22  VKTLHAQIIKLGLHQYG---------------PLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           VK +HAQI++  +                   P P+ L           YA  L   +P 
Sbjct: 28  VKQIHAQILRSKMDNSNLLLLKLVLCCCTLPSPSPSAL----------DYALSLFSHIPN 77

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
                   +L  +++   P+ T+S++   L  +    D F F  L+KA   L A  LG +
Sbjct: 78  PPTRFSNQLLRQFSRGPTPENTLSLY-LHLRRNGFPLDRFSFPPLLKAVSKLSALNLGLE 136

Query: 127 VHA-CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           +H        F  D  ++S+L+ MYA CG   +AR +FD +  ++ V+W  M+  Y+++ 
Sbjct: 137 IHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMSHRDVVTWNIMIDGYSQNA 196

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
                ++++E                               EM+  G +  D ++L +++
Sbjct: 197 HYDHVLKLYE-------------------------------EMKTSGTE-PDAIILCTVL 224

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD----------- 294
            ACA+   L  GK IH  +   G+     I  ++V+MYA C  +  A++           
Sbjct: 225 SACAHAGNLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMV 284

Query: 295 --------------------IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
                               IF RM  KD+V W+++I G A+  Q  E L L++EM    
Sbjct: 285 VSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRR 344

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
           + P+++T + +I AC++VG + +  K   +  +  G   +L     L+D+ ++ G+L +A
Sbjct: 345 IVPDQITMLSVISACANVGALVQA-KWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKA 403

Query: 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
             + + MP   +  +W+++++A   H + +    +  H +  +  +P+    +  +YA
Sbjct: 404 REVFENMP-RKNVISWSSMINAFAMHGDADSAIALF-HRMKEQNIEPNGVTFIGVLYA 459



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 114/265 (43%), Gaps = 18/265 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CA     +  K +H    K G  +  P+ N LID Y KC  +  A  + E MP+++ 
Sbjct: 356 ISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAREVFENMPRKNV 415

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW+S++ A+         I++F  M     ++P+   F  ++ AC   G    G++  +
Sbjct: 416 ISWSSMINAFAMHGDADSAIALFHRMKE-QNIEPNGVTFIGVLYACSHAGLVEEGQKFFS 474

Query: 130 CFV----LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARS 184
             +    +SP  +       +VD+Y +      A  + +++    N + W +++SA    
Sbjct: 475 SMINEHRISPQREH---YGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSLMSACQNH 531

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G     +E+ E A  R L L       LV   N     Y+  E R + V +V  L+    
Sbjct: 532 GE----IELGEFAATRLLELEPDHDGALVVLSN----IYA-KEKRWDDVGLVRKLMKHKG 582

Query: 245 VGACANFAVLELGKQIHGLVIALGY 269
           V      + +E+  ++H  ++A  Y
Sbjct: 583 VSKEKACSRIEVNNEVHVFMMADRY 607


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/602 (38%), Positives = 334/602 (55%), Gaps = 35/602 (5%)

Query: 10  LRVCA-RHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           LR C    QI L  + +H+  IK G      +   LID Y K   +  A  +LE + +RD
Sbjct: 353 LRTCTCTGQIELG-EQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRD 411

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW S++  Y Q +  ++ ++ F  M     + PD+   AS   AC  + A R G Q+H
Sbjct: 412 VVSWTSMIAGYVQHDFCEEALATFKEMQDCG-VWPDNIGLASAASACAGIKAMRQGLQIH 470

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           A   +S +  D  +                               W  +++ YAR GR +
Sbjct: 471 ARVYVSGYAADISI-------------------------------WNTLVNLYARCGRSE 499

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A  +F +   ++   W  L+SG  QSR    A   F++M + G    +     S + A 
Sbjct: 500 EAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAK-YNVFTFISAISAL 558

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           AN A ++ GKQ+HG  +  G+ S   ++NA++ +Y KC  I  AK IF  M  ++ VSW 
Sbjct: 559 ANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWN 618

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           +II   +QHG+  E L L+D+M   G+KPN+VTF+G++ ACSHVGLV +G   FKSM   
Sbjct: 619 TIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNV 678

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YG+ P   HY C++D+L R+G LD A   +  MP   +   W  LLSACK H+N E+G  
Sbjct: 679 YGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGEL 738

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            A HLL L+P D +SY+LLSN YA    W +  +VRK+M    ++KEPG S+IE     H
Sbjct: 739 AAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVH 798

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F+ G+  HPL D+I++ L+EL+  + + GY  +  ++ H+ EQ++K+   F HSE+LAV
Sbjct: 799 AFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAV 858

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+GL+   P   LRV+KNLRVC DCH  MK  S +T+REIV+RD  R+HHF  G CSC D
Sbjct: 859 AFGLMTLPPCIPLRVIKNLRVCDDCHSWMKFTSEVTRREIVLRDVYRFHHFNSGSCSCGD 918

Query: 609 FW 610
           +W
Sbjct: 919 YW 920



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 133/526 (25%), Positives = 230/526 (43%), Gaps = 62/526 (11%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C + ++    + +HAQ+ K        + N LI  Y      + A  +  +M   D 
Sbjct: 151 LSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDR 210

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V++ ++++ + Q    +  + IF  M  L  L+PD    ASL+ AC S+G  + GKQ+H+
Sbjct: 211 VTFNTLISGHAQCGHGECALQIFDEM-QLSGLRPDCVTVASLLAACASVGDLQKGKQLHS 269

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +    D + + SL+D+Y KCG    A  +F+     N V W  ML AY +      
Sbjct: 270 YLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAK 329

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           + EIF Q                               M+  G+   +      I+  C 
Sbjct: 330 SFEIFGQ-------------------------------MQATGIH-PNKFTYPCILRTCT 357

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               +ELG+QIH L I  G+ES +++S  ++DMY+K   +  A+ I   + ++DVVSWTS
Sbjct: 358 CTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTS 417

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G  QH   EE LA + EM   GV P+ +       AC+ +  + +G ++  + +   
Sbjct: 418 MIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQI-HARVYVS 476

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G    +  +  L++L +R G  +EA +L + +  + DE TW  L+S     R  E    V
Sbjct: 477 GYAADISIWNTLVNLYARCGRSEEAFSLFREIDHK-DEITWNGLISGFGQSRLYEQALMV 535

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
                         ++ +S   A   ++  +S +  L ++ ++K+         GK  H 
Sbjct: 536 --------------FMKMSQAGAKYNVFTFISAISALANLADIKQ---------GKQVH- 571

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEK 535
             A +T H  + E+   L  L  +    G + D   +  +M  + +
Sbjct: 572 GRAVKTGHTSETEVANALISLYGKC---GSIEDAKMIFSEMSLRNE 614



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/399 (25%), Positives = 177/399 (44%), Gaps = 69/399 (17%)

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++HA  V+     D ++ + L+D+YAK GL   AR VF  +  ++ VSW AMLS YA+ G
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRG 123

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             K+A  ++ Q        WTA+                          I  P VLSS++
Sbjct: 124 LGKEAFRLYSQMH------WTAV--------------------------IPTPYVLSSVL 151

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            AC    +   G+ IH  V    + S  F+ NA++ +Y        A+ +F  M   D V
Sbjct: 152 SACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRV 211

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           ++ ++I G AQ G  E  L ++DEM  +G++P+ VT   L+ AC+ VG + KG++L   +
Sbjct: 212 TFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYL 271

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENL---------------------------- 397
           ++  G++        LLDL  + G ++ A ++                            
Sbjct: 272 LKA-GMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKS 330

Query: 398 ------IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451
                 ++A    P++ T+  +L  C      E+G ++  H LS+K    S   +   + 
Sbjct: 331 FEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQI--HSLSIKNGFESDMYVSGVLI 388

Query: 452 ASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIF 490
              + ++ + K RK++ ++E +    ++ +  G   H F
Sbjct: 389 DMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDF 427


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 234/623 (37%), Positives = 352/623 (56%), Gaps = 40/623 (6%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKC----DLVQYAHHLLEEMPQRDHVSWASILT--- 77
            HA  +K G      + N L+  Y KC     L+  A  + +E+ ++D  SW +++T   
Sbjct: 171 FHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYV 230

Query: 78  ----------------------AYN-------QANLPQKTISIFSTMLALDKLQPDHFVF 108
                                 AYN            Q+ + +   M++   ++ D F +
Sbjct: 231 KNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVS-SGIELDEFTY 289

Query: 109 ASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL 168
            S+++AC + G  +LGKQVHA +VL          +SLV +Y KCG  + ARA+F+ +  
Sbjct: 290 PSVIRACATAGLLQLGKQVHA-YVLRREDFSFHFDNSLVSLYYKCGKFDEARAIFEKMPA 348

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228
           K+ VSW A+LS Y  SG   +A  IF++   +N+  W  ++SGL ++    +    F  M
Sbjct: 349 KDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCM 408

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
           +REG +  D    S  + +CA       G+Q H  ++ +G++S L   NA++ MYAKC  
Sbjct: 409 KREGFEPCD-YAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGV 467

Query: 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
           +  A+ +F  M   D VSW ++I    QHG   E + +Y+EM+  G++P+ +T + ++ A
Sbjct: 468 VEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTA 527

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           CSH GLV +GRK F SM   Y I P   HY  L+DLL RSG   +AE++I+++PF+P   
Sbjct: 528 CSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAE 587

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
            W ALLS C+ H N E+G   A+ L  L PE   +Y+LLSN++A+   W+ V++VRKLM 
Sbjct: 588 IWEALLSGCRVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMR 647

Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH 528
              VKKE   S+IE     H F   +TSHP  + ++  L +L  EM+R GYVPDTS VLH
Sbjct: 648 DRGVKKEVACSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLH 707

Query: 529 DMEQK-EKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
           D+E    KE  L  HSE++AVA+GL+K  PGT +R+ KNLR CGDCH   + +S + +R+
Sbjct: 708 DVESDGHKEDMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTCGDCHNFFRFLSWVVQRD 767

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           I++RD  R+HHF++G+CSC +FW
Sbjct: 768 IILRDRKRFHHFRNGECSCGNFW 790



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 138/543 (25%), Positives = 228/543 (41%), Gaps = 83/543 (15%)

Query: 4   SHYLHRLRVCA--RHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
           + Y   LR+C   R       + +H  II  G      + N LID Y K   + YA  L 
Sbjct: 13  NRYAANLRLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLF 72

Query: 62  EEMPQ---------------------------------RDHVSWASILTAYNQANLPQKT 88
           +E+ +                                 RD V + +++T ++  N     
Sbjct: 73  DEISEPDKIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSA 132

Query: 89  ISIFSTMLALDKLQPDHFVFASLVKACGSLG-ATRLGKQVHACFVLSPFCDDDVVKSSLV 147
           I++F  M   +  +PD+F FAS++     +    +   Q HA  + S       V ++LV
Sbjct: 133 INLFCKM-KHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALV 191

Query: 148 DMYAKCG----LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR-NL 202
            +Y+KC     L ++AR VFD I  K+  SWT M++ Y ++G      E+ E       L
Sbjct: 192 SVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKL 251

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             + A++SG V      +A      M   G+++ D     S++ ACA   +L+LGKQ+H 
Sbjct: 252 VAYNAMISGYVNRGFYQEALEMVRRMVSSGIEL-DEFTYPSVIRACATAGLLQLGKQVHA 310

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI------------ 310
            V+     S  F  N++V +Y KC     A+ IF +M  KD+VSW ++            
Sbjct: 311 YVLRREDFSFHF-DNSLVSLYYKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGE 369

Query: 311 -------------------IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
                              I G A++G  EE L L+  M   G +P +  F G I +C+ 
Sbjct: 370 AKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPCDYAFSGAIKSCAV 429

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
           +G    G++    +++  G   SL     L+ + ++ G ++EA  + + MP   D  +W 
Sbjct: 430 LGAYCNGQQYHAQLLK-IGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPC-LDSVSWN 487

Query: 412 ALLSACKHHRNTEMGTRVANHLL--SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469
           AL++A   H +      V   +L   ++P+     I L  V  + +    V + RK    
Sbjct: 488 ALIAALGQHGHGAEAVDVYEEMLKKGIRPDR----ITLLTVLTACSHAGLVDQGRKYFDS 543

Query: 470 MEV 472
           ME 
Sbjct: 544 MET 546


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/605 (37%), Positives = 346/605 (57%), Gaps = 33/605 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  L  C         K +H+++ K G      + N LI  Y +C  ++ A  + ++M 
Sbjct: 331 YVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMV 390

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           ++D +SW +++    ++    + ++++  M     ++P+   + S++ AC S  A   G+
Sbjct: 391 RKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAG-VEPNRVTYTSILNACSSPAALEWGR 449

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++H   V +    D  V ++LV+MY+ CG                SV             
Sbjct: 450 RIHQQVVEAGLATDAHVGNTLVNMYSMCG----------------SV------------- 480

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             KDA ++F++   R++  + A++ G        +A   F  ++ EG+   D +   +++
Sbjct: 481 --KDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLK-PDKVTYINML 537

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            ACAN   LE  ++IH LV   G+ S   + NA+V  YAKC     A  +F +M +++V+
Sbjct: 538 NACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVI 597

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SW +II G+AQHG+ ++ L L++ M   GVKP+ VTFV L+ ACSH GL+ +GR+ F SM
Sbjct: 598 SWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSM 657

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
            +D+ I P+++HY C++DLL R+G LDEAE LIK MPF+ +   W ALL AC+ H N  +
Sbjct: 658 SQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPV 717

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
             R A   L L  ++   Y+ LS++YA+A MW   +K+RKLM    V KEPG S+I+ G 
Sbjct: 718 AERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWIQVGD 777

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H F A + SHP  ++I+  L  L   MK +GYVPDT SV+HD+++ EKE  +  HSER
Sbjct: 778 KLHYFVAEDRSHPQSEKIYAELDRLTHAMKMKGYVPDTRSVMHDVDEGEKENAVCHHSER 837

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+AYGL+ + PGT + + KNLRVC DCH   K IS+I  REI+ RD  R+HHFKDG CS
Sbjct: 838 LAIAYGLISTPPGTRIHIFKNLRVCPDCHTATKFISKIVDREIIARDVNRFHHFKDGVCS 897

Query: 606 CNDFW 610
           C D+W
Sbjct: 898 CGDYW 902



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/489 (26%), Positives = 230/489 (47%), Gaps = 43/489 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H Q ++ GL     + N +++ Y KC  ++ A  + ++M ++  VSW   +  Y   
Sbjct: 146 REIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADC 205

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +    IF  M   + + P+   + S++ A  S  A + GK VH+  + +    D  V
Sbjct: 206 GRSETAFEIFQKM-EQEGVVPNRITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAV 264

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LV MYAKCG   + R VF+ +  ++ ++W  M+   A  G  ++A E++ Q      
Sbjct: 265 GTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQ------ 318

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                    M+REGV + + +    ++ AC N A L  GK+IH 
Sbjct: 319 -------------------------MQREGV-MPNKITYVILLNACVNSAALHWGKEIHS 352

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            V   G+ S + + NA++ MY++C  I  A+ +F +M RKDV+SWT++I G A+ G   E
Sbjct: 353 RVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAE 412

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L +Y EM  AGV+PN VT+  ++ ACS    +  GR++ + ++E  G+         L+
Sbjct: 413 ALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEA-GLATDAHVGNTLV 471

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPED 440
           ++ S  G + +A  +   M  + D   + A++     H   +   ++ + L    LKP D
Sbjct: 472 NMYSMCGSVKDARQVFDRM-IQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKP-D 529

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
             +YI + N  A++   +   ++  L     V+K   +S    G      YA   S    
Sbjct: 530 KVTYINMLNACANSGSLEWAREIHTL-----VRKGGFFSDTSVGNALVSTYAKCGSFSDA 584

Query: 501 DEIFELLTE 509
             +FE +T+
Sbjct: 585 SIVFEKMTK 593



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/439 (25%), Positives = 211/439 (48%), Gaps = 66/439 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H++I+  G      +   L+  Y KC   +    + E++  RD ++W +++    + 
Sbjct: 247 KAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNTMIGGLAEG 306

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++   +++ M   + + P+   +  L+ AC +  A   GK++H+    + F  D  V
Sbjct: 307 GYWEEASEVYNQM-QREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAGFTSDIGV 365

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           +++L+ MY++CG   +AR VFD +  K+ +SWTAM+   A+SG   +A+ +++       
Sbjct: 366 QNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQ------- 418

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                   EM++ GV+  + +  +SI+ AC++ A LE G++IH 
Sbjct: 419 ------------------------EMQQAGVE-PNRVTYTSILNACSSPAALEWGRRIHQ 453

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            V+  G  +   + N +V+MY+ C  +  A+ +F RM ++D+V++ ++I G A H   +E
Sbjct: 454 QVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKE 513

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVG----------LVGKG-----RKLFKSMIE 367
            L L+D +   G+KP++VT++ ++ AC++ G          LV KG       +  +++ 
Sbjct: 514 ALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNALVS 573

Query: 368 DYGITPSLQHYTCLLDLLSRS---------------GHLDEAENLIKAMPFE---PDEPT 409
            Y    S    + + + +++                G   +A  L + M  E   PD  T
Sbjct: 574 TYAKCGSFSDASIVFEKMTKRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVT 633

Query: 410 WAALLSACKHHRNTEMGTR 428
           + +LLSAC H    E G R
Sbjct: 634 FVSLLSACSHAGLLEEGRR 652



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 150/631 (23%), Positives = 264/631 (41%), Gaps = 94/631 (14%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP---LPNTLIDAYGKCDLVQYAHHL 60
           S Y+  L+ C   +  +  + +H  II+   H+  P     N LI+ Y +C  ++ A  +
Sbjct: 24  SDYMKMLKRCIEVKDLVAGRQVHQHIIQ---HRTVPDQYTVNALINMYIQCGSIEEARQV 80

Query: 61  LEEMP--QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSL 118
            +++   +R   SW +++  Y Q    +K + +   M     L PD     S + +C S 
Sbjct: 81  WKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQ-HGLAPDRTTIMSFLSSCKSP 139

Query: 119 GATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAML 178
           GA   G+++H   + +    D  V + +++MYAKCG    AR VFD ++ K+ VSWT  +
Sbjct: 140 GALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITI 199

Query: 179 SAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238
             YA  GR + A EIF++                               M +EGV + + 
Sbjct: 200 GGYADCGRSETAFEIFQK-------------------------------MEQEGV-VPNR 227

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
           +   S++ A ++ A L+ GK +H  ++  G+ES   +  A+V MYAKC      + +F +
Sbjct: 228 ITYISVLNAFSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEK 287

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
           +  +D+++W ++I G A+ G  EE   +Y++M   GV PN++T+V L+ AC +   +  G
Sbjct: 288 LVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWG 347

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM----------------- 401
           +++  S +   G T  +     L+ + SR G + +A  +   M                 
Sbjct: 348 KEI-HSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAK 406

Query: 402 -----------------PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK-PEDPSS 443
                              EP+  T+ ++L+AC      E G R+   ++      D   
Sbjct: 407 SGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHV 466

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
              L N+Y   +M   V   R++   M  +    Y+ +           G  +H L  E 
Sbjct: 467 GNTLVNMY---SMCGSVKDARQVFDRMIQRDIVAYNAM---------IGGYAAHNLGKEA 514

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE-RLAVAYGLLKSVPGTVLR 562
            +L   L  E    G  PD  + ++ +        L W  E    V  G   S       
Sbjct: 515 LKLFDRLQEE----GLKPDKVTYINMLNACANSGSLEWAREIHTLVRKGGFFSDTSVGNA 570

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDA 593
           +V     CG       +  ++TKR ++  +A
Sbjct: 571 LVSTYAKCGSFSDASIVFEKMTKRNVISWNA 601


>gi|296088012|emb|CBI35295.3| unnamed protein product [Vitis vinifera]
          Length = 645

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/639 (36%), Positives = 360/639 (56%), Gaps = 34/639 (5%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           ++YLH L  C + +     K +H   +K   +    + + L   Y  C+ V  A  L +E
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           +P    + W  I+ AY         I ++ +ML L  ++P+ + +  ++KAC  L A   
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLAIED 127

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G ++H+   +     D  V ++LVD YAKCG+   A+ +F S+  ++ V+W AM++  + 
Sbjct: 128 GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187

Query: 184 SGRKKDAME--------------------------------IFEQAPVRNLFLWTALVSG 211
            G   DA++                                IF+   VRN   W+A++ G
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTCQCLLYARKIFDVMGVRNEVSWSAMIGG 247

Query: 212 LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271
            V S    +A   F  M+  G+D  D   +  ++ AC++ A L+ G   HG +I  G+ +
Sbjct: 248 YVASDCMKEALDIFRMMQLSGID-PDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFAT 306

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
              I NA++DMY+KC  I  A+++F RM R D+VSW ++I+G   HG   E L L+ +++
Sbjct: 307 DTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLL 366

Query: 332 SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
           + G+KP+++TF+ L+ +CSH GLV +GR  F +M  D+ I P ++H  C++D+L R+G +
Sbjct: 367 ALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLI 426

Query: 392 DEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451
           DEA + I+ MPFEPD   W+ALLSAC+ H+N E+G  V+  + SL PE   +++LLSN+Y
Sbjct: 427 DEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTGNFVLLSNIY 486

Query: 452 ASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELD 511
           ++A  W   + +R       +KK PG S+IE     H F  G+ SH    +I   L EL 
Sbjct: 487 SAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQINRKLEELL 546

Query: 512 AEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCG 571
            EMKR GY  + S V  D+E++EKE+ L +HSE+LA+A+G+L    G  + V KNLRVCG
Sbjct: 547 VEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPILVTKNLRVCG 606

Query: 572 DCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           DCH  +K ++ ITKREI VRDA R+HHFK+G C+C DFW
Sbjct: 607 DCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 645


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/602 (38%), Positives = 334/602 (55%), Gaps = 35/602 (5%)

Query: 10  LRVCA-RHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           LR C    QI L  + +H+  IK G      +   LID Y K   +  A  +LE + +RD
Sbjct: 353 LRTCTCTGQIELG-EQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRD 411

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW S++  Y Q +  ++ ++ F  M     + PD+   AS   AC  + A R G Q+H
Sbjct: 412 VVSWTSMIAGYVQHDFCEEALATFKEMQDCG-VWPDNIGLASAASACAGIKAMRQGLQIH 470

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           A   +S +  D  +                               W  +++ YAR GR +
Sbjct: 471 ARVYVSGYAADISI-------------------------------WNTLVNLYARCGRSE 499

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A  +F +   ++   W  L+SG  QSR    A   F++M + G    +     S + A 
Sbjct: 500 EAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAK-YNVFTFISAISAL 558

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           AN A ++ GKQ+HG  +  G+ S   ++NA++ +Y KC  I  AK IF  M  ++ VSW 
Sbjct: 559 ANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRNEVSWN 618

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           +II   +QHG+  E L L+D+M   G+KPN+VTF+G++ ACSHVGLV +G   FKSM   
Sbjct: 619 TIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLSYFKSMSNV 678

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YG+ P   HY C++D+L R+G LD A   +  MP   +   W  LLSACK H+N E+G  
Sbjct: 679 YGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACKVHKNIEIGEL 738

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            A HLL L+P D +SY+LLSN YA    W +  +VRK+M    ++KEPG S+IE     H
Sbjct: 739 AAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGRSWIEVKNAVH 798

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F+ G+  HPL D+I++ L+EL+  + + GY  +  ++ H+ EQ++K+   F HSE+LAV
Sbjct: 799 AFFVGDRLHPLSDQIYKFLSELNDRLSKIGYKQENPNLFHEKEQEQKDPTAFVHSEKLAV 858

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+GL+   P   LRV+KNLRVC DCH  MK  S +T+REIV+RD  R+HHF  G CSC D
Sbjct: 859 AFGLMTLPPCIPLRVIKNLRVCDDCHSWMKCTSEVTRREIVLRDVYRFHHFNSGSCSCGD 918

Query: 609 FW 610
           +W
Sbjct: 919 YW 920



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 114/412 (27%), Positives = 190/412 (46%), Gaps = 35/412 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C + ++    + +HAQ+ K        + N LI  Y      + A  +  +M   D 
Sbjct: 151 LSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDR 210

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V++ ++++ + Q    +  + IF  M  L  L+PD    ASL+ AC S+G  + GKQ+H+
Sbjct: 211 VTFNTLISGHAQCGHGECALQIFDEM-QLSGLRPDCVTVASLLAACASVGDLQKGKQLHS 269

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +    D + + SL+D+Y KCG    A  +F+     N V W  ML AY +      
Sbjct: 270 YLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAK 329

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           + EIF Q                               M+  G+   +      I+  C 
Sbjct: 330 SFEIFGQ-------------------------------MQATGIH-PNQFTYPCILRTCT 357

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               +ELG+QIH L I  G+ES +++S  ++DMY+K   +  A+ I   + ++DVVSWTS
Sbjct: 358 CTGQIELGEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTS 417

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G  QH   EE LA + EM   GV P+ +       AC+ +  + +G ++  + +   
Sbjct: 418 MIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQI-HARVYVS 476

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           G    +  +  L++L +R G  +EA +L + +  + DE TW  L+S     R
Sbjct: 477 GYAADISIWNTLVNLYARCGRSEEAFSLFREIEHK-DEITWNGLISGFGQSR 527



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 177/399 (44%), Gaps = 69/399 (17%)

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++HA  V+     D ++ + L+D+YAK GL   AR VF  +  ++ VSW AMLS YA+SG
Sbjct: 64  EIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSG 123

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             K+A  ++ Q        WTA+                          I  P VLSS++
Sbjct: 124 LGKEAFRLYSQMH------WTAV--------------------------IPTPYVLSSVL 151

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            AC    +   G+ IH  V    + S  F+ NA++ +Y        A+ +F  M   D V
Sbjct: 152 SACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRV 211

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           ++ ++I G AQ G  E  L ++DEM  +G++P+ VT   L+ AC+ VG + KG++L   +
Sbjct: 212 TFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDLQKGKQLHSYL 271

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENL---------------------------- 397
           ++  G++        LLDL  + G ++ A ++                            
Sbjct: 272 LKA-GMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKS 330

Query: 398 ------IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451
                 ++A    P++ T+  +L  C      E+G ++  H LS+K    S   +   + 
Sbjct: 331 FEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQI--HSLSIKNGFESDMYVSGVLI 388

Query: 452 ASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIF 490
              + +  + K RK++ ++E +    ++ +  G   H F
Sbjct: 389 DMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDF 427


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 218/600 (36%), Positives = 346/600 (57%), Gaps = 34/600 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CAR++     + +HA +          L N+LI  Y KC  V  A  + + MP RD 
Sbjct: 71  ITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMPARDM 130

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW S++  Y Q ++P + + +   ML   + +P+ F FASL+KA G+  ++ +G+Q+HA
Sbjct: 131 CSWTSLIAGYAQNDMPDEALGLLPGMLR-GRFKPNGFTFASLLKAAGASASSGIGEQIHA 189

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V   + DD  V S+L+DMYA+CG  + A AVFD ++ KN VSW A+++ +AR G  + 
Sbjct: 190 LTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGET 249

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            + +F                                EM+R G +       SS+  A A
Sbjct: 250 TLLMFA-------------------------------EMQRNGFEATH-FTYSSVFSAIA 277

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LE GK +H  +I  G     F+ N I+DMYAK   +I A+ +F R+ +KDVV+W S
Sbjct: 278 GIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNS 337

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           ++   AQ+G   E +  ++EM   GV  N++TF+ ++ ACSH GLV +G++ F  M+++Y
Sbjct: 338 MLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF-DMMKEY 396

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            + P + HY  ++DLL R+G L++A   I  MP +P    W ALL +C+ H+N ++G   
Sbjct: 397 NLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFA 456

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A+H+  L P+D    +LL N+YAS   W   ++VRK+M    VKKEP  S++E     H+
Sbjct: 457 ADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSVHM 516

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F A + +HP  +EI++   E+  ++++ GYVP+T  VL  ++++E++ +L +HSE++A+A
Sbjct: 517 FVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEKIALA 576

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + L+    G  +R++KN+R+CGDCH   + IS++ KREIVVRD  R+HHF  G CSC D+
Sbjct: 577 FALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCSCGDY 636



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 151/310 (48%), Gaps = 34/310 (10%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
           ++ SL+ AC    +    + +HA    S F     + +SL+ +Y KCG   +AR VFD +
Sbjct: 66  LYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGM 125

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
             ++  SWT++++ YA++    +A+                L+ G+++ R + + F    
Sbjct: 126 PARDMCSWTSLIAGYAQNDMPDEAL---------------GLLPGMLRGRFKPNGF---- 166

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
                          +S++ A    A   +G+QIH L +   +   +++ +A++DMYA+C
Sbjct: 167 -------------TFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARC 213

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             +  A  +F ++  K+ VSW ++I G A+ G  E TL ++ EM   G +    T+  + 
Sbjct: 214 GRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVF 273

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            A + +G + +G+ +   MI+  G   S      +LD+ ++SG + +A  +   +  + D
Sbjct: 274 SAIAGIGALEQGKWVHAHMIKS-GERLSAFVGNTILDMYAKSGSMIDARKVFDRVD-KKD 331

Query: 407 EPTWAALLSA 416
             TW ++L+A
Sbjct: 332 VVTWNSMLTA 341



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 9/194 (4%)

Query: 230 REGVDIVD-------PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
           R+ +D VD       P +  S++ ACA +  L+  + IH  +    +   +F+ N+++ +
Sbjct: 49  RDTLDSVDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHL 108

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           Y KC  +  A+ +F  M  +D+ SWTS+I G AQ+   +E L L   M+    KPN  TF
Sbjct: 109 YCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTF 168

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
             L+ A       G G ++  ++   Y     +   + LLD+ +R G +D A  +   + 
Sbjct: 169 ASLLKAAGASASSGIGEQI-HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLE 227

Query: 403 FEPDEPTWAALLSA 416
              +  +W AL++ 
Sbjct: 228 -SKNGVSWNALIAG 240


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/589 (36%), Positives = 348/589 (59%), Gaps = 2/589 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           ++LH   +K  +     + N+LI  Y  C  +  A  +   + ++D VSW S++  + Q 
Sbjct: 151 QSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQK 210

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P K + +F  M + D ++  H     ++ AC  +     G+QV +    +    +  +
Sbjct: 211 GSPDKALELFKKMESED-VKASHVTMVGVLSACAKIRNLEFGRQVCSYIEENRVNVNLTL 269

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++++DMY KCG   +A+ +FD+++ K++V+WT ML  YA S   + A E+    P +++
Sbjct: 270 ANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDI 329

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W AL+S   Q+    +A   F E++ +    ++ + L S + ACA    LELG+ IH 
Sbjct: 330 VAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHS 389

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +   G      +++A++ MY+KC D+  ++++F  + ++DV  W+++I G A HG   E
Sbjct: 390 YIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNE 449

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + ++ +M  A VKPN VTF  +  ACSH GLV +   LF  M  +YGI P  +HY C++
Sbjct: 450 AVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIV 509

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+L RSG+L++A   I+AMP  P    W ALL ACK H N  +       LL L+P +  
Sbjct: 510 DVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEPRNDG 569

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +++LLSN+YA    W++VS++RK M V  +KKEPG S IE     H F +G+ +HP+ ++
Sbjct: 570 AHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEK 629

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKE-KERQLFWHSERLAVAYGLLKSVPGTVL 561
           ++  L E+  ++K  GY P+ S VL  +E++E KE+ L  HSE+LA+ YGL+ +    V+
Sbjct: 630 VYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKVI 689

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           RV+KNLRVCGDCH V K+IS++  REI+VRD  R+HHF++G+CSCNDFW
Sbjct: 690 RVIKNLRVCGDCHSVAKLISQLYDREIIVRDRYRFHHFRNGQCSCNDFW 738



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 193/442 (43%), Gaps = 86/442 (19%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL-----------VQYAHHLLEEMPQRDHV 70
           +K  H  +I+ G         T  D Y    L           ++YA  + +E+P+ +  
Sbjct: 46  LKQTHGHMIRTG---------TFSDPYSASKLFAMAALSSFASLEYARKVFDEIPKPNSF 96

Query: 71  SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC 130
           +W +++ AY     P  +I  F  M++  +  P+ + F  L+KA   + +  LG+ +H  
Sbjct: 97  AWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAAEVSSLSLGQSLHGM 156

Query: 131 FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
            V S    D  V +SL+  Y  CG  ++A  VF +IK K+ VSW +M++ + + G    A
Sbjct: 157 AVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKA 216

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
           +E+F++                               M  E V     + +  ++ ACA 
Sbjct: 217 LELFKK-------------------------------MESEDVK-ASHVTMVGVLSACAK 244

Query: 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
              LE G+Q+   +        L ++NA++DMY KC  I  AK +F  M  KD V+WT++
Sbjct: 245 IRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTM 304

Query: 311 IVGTA-------------------------------QHGQAEETLALYDEM-VSAGVKPN 338
           + G A                               Q+G+  E L ++ E+ +   +K N
Sbjct: 305 LDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLN 364

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           ++T V  + AC+ VG +  GR +  S I+ +GI  +    + L+ + S+ G L+++  + 
Sbjct: 365 QITLVSTLSACAQVGALELGRWI-HSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVF 423

Query: 399 KAMPFEPDEPTWAALLSACKHH 420
            ++  + D   W+A++     H
Sbjct: 424 NSVE-KRDVFVWSAMIGGLAMH 444



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 127/244 (52%), Gaps = 2/244 (0%)

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A ++F++ P  N F W  L+       + + + ++F++M  E     +      ++ A A
Sbjct: 83  ARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYTFPFLIKAAA 142

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
             + L LG+ +HG+ +     S +F++N+++  Y  C D+ +A  +F  ++ KDVVSW S
Sbjct: 143 EVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNS 202

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G  Q G  ++ L L+ +M S  VK + VT VG++ AC+ +  +  GR++  S IE+ 
Sbjct: 203 MINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRNLEFGRQVC-SYIEEN 261

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            +  +L     +LD+ ++ G +++A+ L  AM  E D  TW  +L       + E    V
Sbjct: 262 RVNVNLTLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYEAAREV 320

Query: 430 ANHL 433
            N +
Sbjct: 321 LNSM 324



 Score = 42.4 bits (98), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 36/176 (20%), Positives = 77/176 (43%), Gaps = 9/176 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA+       + +H+ I K G+     + + LI  Y KC  ++ +  +   + +RD 
Sbjct: 372 LSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDV 431

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG----ATRLGK 125
             W++++          + + +F  M   + ++P+   F ++  AC   G    A  L  
Sbjct: 432 FVWSAMIGGLAMHGCGNEAVDMFYKMQEAN-VKPNGVTFTNVFCACSHTGLVDEAESLFH 490

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSA 180
           Q+ + + + P   ++   + +VD+  + G    A    +++ +  S S W A+L A
Sbjct: 491 QMESNYGIVP---EEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGA 543


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Vitis vinifera]
          Length = 1724

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/603 (38%), Positives = 345/603 (57%), Gaps = 36/603 (5%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L  C+  +  +  K +HA II  G H +  + N L+  YGK  ++  A  +L+ MPQ D 
Sbjct: 1156 LAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDR 1215

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV-FASLVKACGSLG-ATRLGKQV 127
            V+W +++  + +   P + +  +   L  +K  P +++   S++ AC +     + G  +
Sbjct: 1216 VTWNALIGGHAENEEPNEAVKAYK--LIREKGIPANYITMVSVLGACSAPDDLLKHGMPI 1273

Query: 128  HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
            HA  VL+ F  DD VK+SL+ MYAKCG  N++  +FD +  K+ ++W AM++A A  G  
Sbjct: 1274 HAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCG 1333

Query: 188  KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
            ++A++IF                                EMR  GV++ D    S  + A
Sbjct: 1334 EEALKIFG-------------------------------EMRNVGVNL-DQFSFSGGLAA 1361

Query: 248  CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
             AN AVLE G+Q+HGLVI LG+ES L ++NA +DMY KC ++     +  +   +  +SW
Sbjct: 1362 TANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSW 1421

Query: 308  TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
              +I   A+HG  ++    + EM+  G KP+ VTFV L+ AC+H GLV +G   + SM  
Sbjct: 1422 NILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTR 1481

Query: 368  DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
            ++G+ P ++H  C++DLL RSG L  AE  IK MP  P++  W +LL+AC+ H N E+  
Sbjct: 1482 EFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELAR 1541

Query: 428  RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
            + A HLL L P D S+Y+L SNV A++  W+ V  +RK M    +KK+P  S+++     
Sbjct: 1542 KTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKV 1601

Query: 488  HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
            H F  GE  HP    I   L EL    K  GYVPDTS  LHDM++++KE  L+ HSERLA
Sbjct: 1602 HSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLA 1661

Query: 548  VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
            +A+GL+ +   + LR+ KNLRVCGDCH V K +S I  R+IV+RD  R+HHF  GKCSC 
Sbjct: 1662 LAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCG 1721

Query: 608  DFW 610
            D+W
Sbjct: 1722 DYW 1724



 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/448 (31%), Positives = 235/448 (52%), Gaps = 32/448 (7%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           + + L+D + KC  ++ A +L   M +RD VSW +++  Y        +  +F +ML   
Sbjct: 168 VKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLR-G 226

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            L PD +   S+++A    G   +  Q+H       +   D+V   L++ YAK G   +A
Sbjct: 227 GLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSA 286

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           + +   +  K+  S TA+++ YA  G       I+                        +
Sbjct: 287 KDLRKGMLKKDLFSSTALITGYAHEG-------IYS-----------------------V 316

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           DA   F EM +  + + D ++L S++  CAN A   LG QIH   +       + + NA+
Sbjct: 317 DALDLFKEMNQMNIGM-DDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNAL 375

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           +DMYAK  +I  AK  F  M  K+V+SWTS+I G A+HG     ++LY +M S G KPN+
Sbjct: 376 IDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPND 435

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           VTF+ L++ACSH GL  +G + F +M+  Y I P  +HY+C++DL +R G L+EA NL+ 
Sbjct: 436 VTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLC 495

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
            +  + +   W A+L A   +    +G   A++L +++PE+  +Y++L+++Y++A +W  
Sbjct: 496 KIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDD 555

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
             K+RKLM     KK  GYS+ +  K S
Sbjct: 556 AWKIRKLMEERSTKKNAGYSFFQATKKS 583



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 205/447 (45%), Gaps = 38/447 (8%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S YL  L++C   +       +H  +I  G      L   LI  Y K   V  A ++ + 
Sbjct: 31  SLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDG 90

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           MP+R  VSW ++++ Y+Q    +K   +FS M     ++ + F + S ++AC SL    +
Sbjct: 91  MPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCG-VKANQFTYGSALRACTSLRCLDM 149

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G QV  C     F ++  VKS+LVD ++KCG   +A  +F ++  ++ VSW AM+  YA 
Sbjct: 150 GIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAV 209

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            G                                  D+F  F  M R G+ + D   L S
Sbjct: 210 QGFAD-------------------------------DSFCMFRSMLRGGL-VPDCYTLGS 237

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++ A A    L +  QIHG++  LGY S   ++  +++ YAK   + +AKD+   M +KD
Sbjct: 238 VLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKD 297

Query: 304 VVSWTSIIVGTAQHG-QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           + S T++I G A  G  + + L L+ EM    +  ++V    ++  C+++     G ++ 
Sbjct: 298 LFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIH 357

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
              ++ Y  +  +     L+D+ ++SG +++A+     M  E +  +W +L+S    H  
Sbjct: 358 AFALK-YQPSYDVAMGNALIDMYAKSGEIEDAKRAFDEME-EKNVISWTSLISGYAKHGY 415

Query: 423 TEMGTRVANHLLS--LKPEDPSSYILL 447
             M   +   + S   KP D +   LL
Sbjct: 416 GHMAVSLYKKMESKGFKPNDVTFLSLL 442



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 201/418 (48%), Gaps = 36/418 (8%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            + +H  ++KLGL     + NTL+  Y +    + A  + + M +RD +SW S++  Y Q 
Sbjct: 1068 RGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQD 1127

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                  + I + +L + K+  +H  FAS + AC +       K VHA  +++ F D  +V
Sbjct: 1128 GKCLDGLKILAELLQMGKVM-NHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIV 1186

Query: 143  KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
             ++LV MY K G+   A+ V  ++   + V+W A++  +A +    +A++ ++       
Sbjct: 1187 GNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKL------ 1240

Query: 203  FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC-ANFAVLELGKQIH 261
                                     +R +G+   + + + S++GAC A   +L+ G  IH
Sbjct: 1241 -------------------------IREKGIP-ANYITMVSVLGACSAPDDLLKHGMPIH 1274

Query: 262  GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
              ++  G+ES  ++ N+++ MYAKC D+ ++  IF  +  K  ++W +++   A HG  E
Sbjct: 1275 AHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGE 1334

Query: 322  ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
            E L ++ EM + GV  ++ +F G + A +++ ++ +G++L   +I+  G    L      
Sbjct: 1335 EALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIK-LGFESDLHVTNAA 1393

Query: 382  LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
            +D+  + G + +   ++   P      +W  L+SA   H   +      + +L L P+
Sbjct: 1394 MDMYGKCGEMHDVLKML-PQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPK 1450



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 192/400 (48%), Gaps = 45/400 (11%)

Query: 23   KTLHAQII----KLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
            K LHA  I     LG+ Q     NTLI+ Y K   +++A ++ +EM  R+  SW+++L+ 
Sbjct: 764  KALHAFCIVGSVNLGIFQ----TNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSG 819

Query: 79   YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG-ATRLGKQVHACFVLSPFC 137
            Y +  L ++ + +F  M  L  ++P+ F+ ASL+ AC   G     G QVH   V +   
Sbjct: 820  YVRVGLYEEAVGLFCQMWGLG-VEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGIL 878

Query: 138  DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
             D  V ++LV  Y   GL  NA+ +F+ +   N VSWT+++  Y+ SG   + + ++++ 
Sbjct: 879  GDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQR- 937

Query: 198  PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
                                          MR+EGV   +    +++  +C       LG
Sbjct: 938  ------------------------------MRQEGVS-GNQNTFATVTSSCGLLEDQVLG 966

Query: 258  KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
             Q+ G +I  G+E  + ++N+++ M++  S +  A  +F  M   D++SW ++I   A H
Sbjct: 967  YQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHH 1026

Query: 318  GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
            G   E+L  +  M     + N  T   L+  CS V  +  GR +   ++   G+  ++  
Sbjct: 1027 GLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGI-HGLVVKLGLDSNVCI 1085

Query: 378  YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417
               LL L S +G  ++AE + +AM  E D  +W +++ AC
Sbjct: 1086 CNTLLTLYSEAGRSEDAELVFQAMT-ERDLISWNSMM-AC 1123



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 205/431 (47%), Gaps = 37/431 (8%)

Query: 25   LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
            +H  ++K G+     +   L+  YG   LV  A  L EEMP  + VSW S++  Y+ +  
Sbjct: 868  VHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGN 927

Query: 85   PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            P + ++++  M   + +  +   FA++  +CG L    LG QV    +   F D   V +
Sbjct: 928  PGEVLNVYQRMRQ-EGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVAN 986

Query: 145  SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
            SL+ M++       A  VFD +   + +SW AM+SAYA  G  ++++  F    +R+L  
Sbjct: 987  SLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHW--MRHL-- 1042

Query: 205  WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                        NE ++                   LSS++  C++   L+ G+ IHGLV
Sbjct: 1043 -----------HNETNS-----------------TTLSSLLSVCSSVDNLKWGRGIHGLV 1074

Query: 265  IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
            + LG +S + I N ++ +Y++      A+ +F  M  +D++SW S++    Q G+  + L
Sbjct: 1075 VKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGL 1134

Query: 325  ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
             +  E++  G   N VTF   + ACS+   + +  K+  ++I   G    L     L+ +
Sbjct: 1135 KILAELLQMGKVMNHVTFASALAACSNPECLIE-SKIVHALIIVAGFHDFLIVGNALVTM 1193

Query: 385  LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
              + G + EA+ +++ MP +PD  TW AL+    H  N E    V  + L  +   P++Y
Sbjct: 1194 YGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG--HAENEEPNEAVKAYKLIREKGIPANY 1250

Query: 445  ILLSNVYASAA 455
            I + +V  + +
Sbjct: 1251 ITMVSVLGACS 1261



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 142/298 (47%), Gaps = 35/298 (11%)

Query: 124  GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
            GK +HA  ++          ++L++MY+K G   +AR VFD ++ +N  SW+ MLS Y R
Sbjct: 763  GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 822

Query: 184  SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
             G  ++A+ +F Q       +W     GL                   GV+  +  +++S
Sbjct: 823  VGLYEEAVGLFCQ-------MW-----GL-------------------GVE-PNGFMVAS 850

Query: 244  IVGACANFAVL-ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            ++ AC+    + + G Q+HG V+  G    +++  A+V  Y     +  A+ +F  M   
Sbjct: 851  LITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDH 910

Query: 303  DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
            +VVSWTS++VG +  G   E L +Y  M   GV  N+ TF  +  +C  +     G ++ 
Sbjct: 911  NVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVL 970

Query: 363  KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
              +I+ YG   S+     L+ + S    ++EA  +   M  E D  +W A++SA  HH
Sbjct: 971  GHIIQ-YGFEDSVSVANSLISMFSSFSSVEEACYVFDHMN-ECDIISWNAMISAYAHH 1026



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 154/329 (46%), Gaps = 42/329 (12%)

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
           +L+ +  + D  ++  +++ C    A + G  +H   + + F  D  + + L+  Y K G
Sbjct: 20  LLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVG 79

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
               AR VFD +  ++ VSWTAM+S Y+++GR       FE+                  
Sbjct: 80  DVIAARNVFDGMPERSVVSWTAMVSGYSQNGR-------FEK------------------ 114

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF 274
                 AF  F +MR  GV   +     S + AC +   L++G Q+ G +    +   LF
Sbjct: 115 ------AFVLFSDMRHCGVK-ANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLF 167

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
           + +A+VD ++KC  +  A  +FG M  +DVVSW ++I G A  G A+++  ++  M+  G
Sbjct: 168 VKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGG 227

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE----DYGITPSLQHYTCLLDLLSRSGH 390
           + P+  T   ++ A +  G +    ++   + +     Y I   L     L++  +++G 
Sbjct: 228 LVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGL-----LINAYAKNGS 282

Query: 391 LDEAENLIKAMPFEPDEPTWAALLSACKH 419
           L  A++L K M  + D  +  AL++   H
Sbjct: 283 LRSAKDLRKGM-LKKDLFSSTALITGYAH 310



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 44/226 (19%)

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           GK +H   I       +F +N +++MY+K  +I  A+ +F  MR ++  SW++++ G  +
Sbjct: 763 GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 822

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH------------------------- 351
            G  EE + L+ +M   GV+PN      LI ACS                          
Sbjct: 823 VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 882

Query: 352 -----------VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
                      +GLV   +KLF+ M  D+ +      +T L+   S SG+  E  N+ + 
Sbjct: 883 VGTALVHFYGSIGLVYNAQKLFEEM-PDHNVVS----WTSLMVGYSDSGNPGEVLNVYQR 937

Query: 401 MPFE---PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           M  E    ++ T+A + S+C    +  +G +V  H++    ED  S
Sbjct: 938 MRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVS 983


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 228/605 (37%), Positives = 351/605 (58%), Gaps = 37/605 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL---VQYAHHLLEEMPQ 66
           +  CA  ++ L  + LH+Q I+ GL     +   LI+ Y KC +   +  A  + +++  
Sbjct: 278 ISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILD 337

Query: 67  RDHVSWASILTAYNQ-ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            +  SW +++T Y Q     ++ + +F  M+ L  + P+HF F+S +KAC +L A R+G+
Sbjct: 338 HNVFSWTAMITGYVQKGGYDEEALDLFRGMI-LTHVIPNHFTFSSTLKACANLAALRIGE 396

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           QV    V   F   + V +SL+ MYA                               RSG
Sbjct: 397 QVFTHAVKLGFSSVNCVANSLISMYA-------------------------------RSG 425

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
           R  DA + F+    +NL  +  ++    ++ N  +A   F E+  +G+        +S++
Sbjct: 426 RIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMG-ASAFTFASLL 484

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
              A+   +  G+QIH  VI  G +    + NA++ MY++C +I +A  +F  M  ++V+
Sbjct: 485 SGAASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVI 544

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SWTSII G A+HG A + L L+ +M+  GV+PN VT++ ++ ACSHVGLV +G K FKSM
Sbjct: 545 SWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSM 604

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
             ++G+ P ++HY C++D+L RSG L EA   I +MP++ D   W   L AC+ H N E+
Sbjct: 605 YTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLEL 664

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G   A  ++  +P DP++YILLSN+YAS + W  VS +RK M    + KE G S++E   
Sbjct: 665 GKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVEN 724

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H FY G+TSHP   EI++ L  L  ++K+ GYVP+   VLHD+E+++KE+ LF HSE+
Sbjct: 725 KVHKFYVGDTSHPKAAEIYDELQNLSVKIKKLGYVPNLDFVLHDVEEEQKEKLLFQHSEK 784

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           +AVA+GL+ +     +RV KNLR+CGDCH  +K IS  T REI+VRDA R+HH KDG+CS
Sbjct: 785 IAVAFGLISTSKMKPIRVFKNLRICGDCHSAIKYISMATGREIIVRDANRFHHIKDGRCS 844

Query: 606 CNDFW 610
           CN++W
Sbjct: 845 CNEYW 849



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/417 (25%), Positives = 202/417 (48%), Gaps = 43/417 (10%)

Query: 11  RVCARHQIALTVKTLHAQIIKLGLHQYGPLPNT-LIDAY--GKCDLVQYAHHLLEEMPQR 67
           R C+  +      ++   ++K G  Q        LID +  G+ DLV  A  + E+MP+R
Sbjct: 176 RACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVS-AFKVFEKMPER 234

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           + V+W  ++T   Q     + I +F  M+ L   +PD F  + ++ AC ++    LG+Q+
Sbjct: 235 NAVTWTLMITRLMQFGYAGEAIDLFLEMI-LSGYEPDRFTLSGVISACANMELLLLGQQL 293

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNN---ARAVFDSIKLKNSVSWTAMLSAYA-R 183
           H+  +      D  V   L++MYAKC +  +   AR +FD I   N  SWTAM++ Y  +
Sbjct: 294 HSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQK 353

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            G  ++A+++F    + ++                                I +    SS
Sbjct: 354 GGYDEEALDLFRGMILTHV--------------------------------IPNHFTFSS 381

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
            + ACAN A L +G+Q+    + LG+ S   ++N+++ MYA+   I  A+  F  +  K+
Sbjct: 382 TLKACANLAALRIGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKN 441

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           ++S+ ++I   A++  +EE L L++E+   G+  +  TF  L+   + +G +GKG ++  
Sbjct: 442 LISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHA 501

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            +I+  G+  +      L+ + SR G+++ A  + + M  + +  +W ++++    H
Sbjct: 502 RVIKS-GLKLNQSVCNALISMYSRCGNIESAFQVFEDME-DRNVISWTSIITGFAKH 556



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 111/431 (25%), Positives = 198/431 (45%), Gaps = 42/431 (9%)

Query: 10  LRVCARHQIALTVKTL-HAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM-PQR 67
           L+ C R + +  + TL H ++ +  L       N+LI  Y KC   + A  + + M   R
Sbjct: 73  LKKCIRTR-SFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSR 131

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           D +SW+++++ +   N+  + +  F  M+  +   P+ + FA+  +AC +     +G  +
Sbjct: 132 DLISWSAMVSCFANNNMGFRALLTFVDMIE-NGYYPNEYCFAAATRACSTAEFVSVGDSI 190

Query: 128 HACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
               V + +   DV V   L+DM+ K                                G 
Sbjct: 191 FGFVVKTGYLQSDVCVGCGLIDMFVK------------------------------GRGD 220

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
              A ++FE+ P RN   WT +++ L+Q     +A   F+EM   G +  D   LS ++ 
Sbjct: 221 LVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYE-PDRFTLSGVIS 279

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS---DIIAAKDIFGRMRRKD 303
           ACAN  +L LG+Q+H   I  G      +   +++MYAKCS    + AA+ IF ++   +
Sbjct: 280 ACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHN 339

Query: 304 VVSWTSIIVGTAQHGQ-AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           V SWT++I G  Q G   EE L L+  M+   V PN  TF   + AC+++  +  G ++F
Sbjct: 340 VFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVF 399

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
              ++  G +        L+ + +RSG +D+A      + FE +  ++  ++ A   + N
Sbjct: 400 THAVK-LGFSSVNCVANSLISMYARSGRIDDARKAFDIL-FEKNLISYNTVIDAYAKNLN 457

Query: 423 TEMGTRVANHL 433
           +E    + N +
Sbjct: 458 SEEALELFNEI 468


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 224/591 (37%), Positives = 350/591 (59%), Gaps = 36/591 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  ++         + N+++  Y KC  ++ A  + +EM  +D V+W S++T Y+Q 
Sbjct: 111 KLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQD 170

Query: 83  NLPQKTISIFSTMLAL--DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
                  +     L +  D L+P+ F  +SLVK CG LG+   GKQ+H C     F ++ 
Sbjct: 171 GYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENV 230

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V SSLVDMYA+C                               G  +++  +F++   +
Sbjct: 231 FVGSSLVDMYARC-------------------------------GELRESRLVFDELESK 259

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           N   W AL+SG  +     +A   F++M+REG    +    S+++ + +    LE GK +
Sbjct: 260 NEVSWNALISGFARKGEGEEALGLFVKMQREGFGATE-FTYSALLCSSSTTGSLEQGKWL 318

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H  ++  G +   ++ N ++ MYAK  +I  AK +F R+ + DVVS  S+++G AQHG  
Sbjct: 319 HAHMMKSGKKLVGYVGNTLLHMYAKSGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLG 378

Query: 321 EETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
           +E + L++EM +   ++PN++TF+ ++ ACSH GL+ +G   F+ +++ YG+ P L HYT
Sbjct: 379 KEAVELFEEMMLWVEIEPNDITFLSVLTACSHAGLLDEGLYYFE-LMKKYGLEPKLSHYT 437

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
            ++DL  R+G LD+A++ I+ MP EP+   W ALL A K H+NTEMG   A  +L L P 
Sbjct: 438 TVVDLFGRAGLLDQAKSFIEEMPIEPNATIWGALLGASKMHKNTEMGAYAAQKVLELDPF 497

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
            P ++ LLSN+YASA  W+ V+KVRK M    +KKEP  S++E     HIF A + SHP 
Sbjct: 498 YPGAHTLLSNIYASAGQWKDVAKVRKEMKDSGLKKEPACSWVEIENSVHIFSANDISHPQ 557

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
           K++++E+   L+ ++K  GYVPDTS V   ++Q+EKE  L +HSE+LA+A+ LL + PG+
Sbjct: 558 KNKVYEMWENLNQKIKEIGYVPDTSHVHVFVDQQEKELNLQYHSEKLALAFALLNTKPGS 617

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V+R++KN+RVCGDCH  +K +S + KREI+VRD  R+HHF+DG CSC D+W
Sbjct: 618 VIRIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFRDGSCSCRDYW 668



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 172/356 (48%), Gaps = 69/356 (19%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           L+PD  ++  L+K C  LG  + GK VH   + S F +D V+K+S++ MYAKCG    AR
Sbjct: 87  LEPDRTIYNKLLKRCTMLGKLKQGKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIAR 146

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            VFD + +K+ V+WT+M++ Y++ G    A               TALV           
Sbjct: 147 QVFDEMCVKDVVTWTSMITGYSQDGYASSAT--------------TALV----------- 181

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
               F+EM R+G+   +   LSS+V  C        GKQIHG     G++  +F+ +++V
Sbjct: 182 ---LFLEMVRDGLR-PNEFALSSLVKCCGFLGSCVDGKQIHGCCWKYGFQENVFVGSSLV 237

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           DMYA+C ++  ++ +F  +  K+ VSW ++I G A+ G+ EE L L+ +M   G    E 
Sbjct: 238 DMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLFVKMQREGFGATEF 297

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY--TCLLDLLSRSGHLDEA---- 394
           T+  L+ + S  G + +G+ L   M++       L  Y    LL + ++SG++ +A    
Sbjct: 298 TYSALLCSSSTTGSLEQGKWLHAHMMKS---GKKLVGYVGNTLLHMYAKSGNICDAKKVF 354

Query: 395 -------------------------------ENLIKAMPFEPDEPTWAALLSACKH 419
                                          E ++  +  EP++ T+ ++L+AC H
Sbjct: 355 DRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLSVLTACSH 410


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 222/589 (37%), Positives = 346/589 (58%), Gaps = 36/589 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  ++         + N+L+  Y +C  ++ A  L +EMP RD VSW S++T Y Q 
Sbjct: 94  KLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQN 153

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV- 141
           +     + +F  ML+ D  +P+ F  +SLVK CG + +   G+Q+HAC      C  +V 
Sbjct: 154 DRASDALLLFPRMLS-DGAEPNEFTLSSLVKCCGYMASYNCGRQIHAC-CWKYGCHSNVF 211

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V SSLVDMYA+C                               G   +AM +F++   +N
Sbjct: 212 VGSSLVDMYARC-------------------------------GYLGEAMLVFDKLGCKN 240

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
              W AL++G  +     +A   F+ M+REG    +    S+++ +C++   LE GK +H
Sbjct: 241 EVSWNALIAGYARKGEGEEALALFVRMQREGYRPTE-FTYSALLSSCSSMGCLEQGKWLH 299

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             ++    +   ++ N ++ MYAK   I  A+ +F ++ + DVVS  S+++G AQHG  +
Sbjct: 300 AHLMKSSQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGK 359

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E    +DEM+  G++PN++TF+ ++ ACSH  L+ +G+  F  ++  Y I P + HY  +
Sbjct: 360 EAAQQFDEMIRFGIEPNDITFLSVLTACSHARLLDEGKHYF-GLMRKYNIEPKVSHYATI 418

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL R+G LD+A++ I+ MP EP    W ALL A K H+NTEMG   A  +  L P  P
Sbjct: 419 VDLLGRAGLLDQAKSFIEEMPIEPTVAIWGALLGASKMHKNTEMGAYAAQRVFELDPSYP 478

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            ++ LL+N+YASA  W+ V+KVRK+M    VKKEP  S++E     H+F A + +HP K+
Sbjct: 479 GTHTLLANIYASAGRWEDVAKVRKIMKDSGVKKEPACSWVEVENSVHVFVANDVAHPQKE 538

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           +I ++  +L+ ++K  GYVPDTS VL  ++Q+EKE  L +HSE+LA+++ LL + PG+ +
Sbjct: 539 KIHKMWEKLNQKIKEIGYVPDTSHVLLFVDQQEKELNLQYHSEKLALSFALLNTPPGSTI 598

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R++KN+RVCGDCH  +K +S + KREI+VRD  R+HHF DG CSC D+W
Sbjct: 599 RIMKNIRVCGDCHSAIKYVSLVVKREIIVRDTNRFHHFCDGFCSCGDYW 647



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/394 (27%), Positives = 185/394 (46%), Gaps = 76/394 (19%)

Query: 74  SILTAYNQANLPQKTISIFSTMLALD-----KLQPDHFVFASLVKACGSLGATRLGKQVH 128
           S     +  NL + +++  + +  LD      L+PD  ++ +L+K C  LG  + GK VH
Sbjct: 38  STFCVIDDRNLLRPSLNSKTGLHVLDLIDCGSLEPDRTLYNTLLKRCTQLGKLKEGKLVH 97

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              + S F  D V+++SL+ MYA+CG    AR +FD +  ++ VSWT+M++ YA++ R  
Sbjct: 98  FHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQNDRAS 157

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           DA+ +F +                               M  +G +  +   LSS+V  C
Sbjct: 158 DALLLFPR-------------------------------MLSDGAE-PNEFTLSSLVKCC 185

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
              A    G+QIH      G  S +F+ +++VDMYA+C  +  A  +F ++  K+ VSW 
Sbjct: 186 GYMASYNCGRQIHACCWKYGCHSNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWN 245

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++I G A+ G+ EE LAL+  M   G +P E T+  L+ +CS +G + +G+ L   +++ 
Sbjct: 246 ALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKS 305

Query: 369 YGITPSLQHY--TCLLDLLSRSGHLDEAENLIKAM------------------------- 401
              +  L  Y    LL + ++SG + +AE +   +                         
Sbjct: 306 ---SQKLVGYVGNTLLHMYAKSGSIRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAA 362

Query: 402 ---------PFEPDEPTWAALLSACKHHRNTEMG 426
                      EP++ T+ ++L+AC H R  + G
Sbjct: 363 QQFDEMIRFGIEPNDITFLSVLTACSHARLLDEG 396


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 223/573 (38%), Positives = 346/573 (60%), Gaps = 9/573 (1%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   +ID Y KC  V+ A  + + M +++ +SW++++ AY      +K + +F  ML+  
Sbjct: 296 LGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSG 355

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            L PD    ASL+ AC +       +QVHA   +     + +V + LV  Y+     ++A
Sbjct: 356 ML-PDKITLASLLYACINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDA 414

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSG--LVQSRN 217
             +FD + +++SVSW+ M+  +A+ G   D M  F     R L    A      L    N
Sbjct: 415 YGLFDGMCVRDSVSWSVMVGGFAKVG---DYMNCF--GTFRELIRCGARPDNYTLPFCGN 469

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             ++   F +MR EGV + D + + ++V ACA    +   + I   +    ++  + +  
Sbjct: 470 ANESLVLFDKMREEGV-VPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGT 528

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           A++DM+AKC  + +A++IF RM  K+V+SW+++I     HGQ  + L L+  M+ +G+ P
Sbjct: 529 AMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILP 588

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           N++T V L+YACSH GLV +G + F  M EDY +   ++HYTC++DLL R+G LDEA  L
Sbjct: 589 NKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKL 648

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           I++M  E DE  W A L AC+ H++  +  + A  LL L+P++P  YILLSN+YA+A  W
Sbjct: 649 IESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRW 708

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
           + V+K R LMS   +KK PG+++IE    SH F  G+T+HP   EI+E+L  L  +++  
Sbjct: 709 EDVAKTRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSKEIYEMLKSLGNKLELV 768

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GYVPDT+ VLHD++++ K   L+ HSE+LA+A+GL+ +   T +R++KNLRVCGDCH   
Sbjct: 769 GYVPDTNFVLHDVDEELKIGILYSHSEKLAIAFGLIATPEHTPIRIIKNLRVCGDCHTFC 828

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K++S IT R I+VRDA R+HHFK+G CSC D+W
Sbjct: 829 KLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 861



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 180/397 (45%), Gaps = 60/397 (15%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           V+ +HAQ    G+ +   + N LI  Y     +  A+ L + M  RD VSW+ ++  + +
Sbjct: 97  VRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAK 156

Query: 82  ANLPQKTISIFSTMLALDKL--QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
                  I+ F T   L +   +PD++    +++AC  L   ++                
Sbjct: 157 VG---DYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQM---------------- 197

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
                +LVDMY KC      R +                         +DA  +F++   
Sbjct: 198 -----ALVDMYVKC------REI-------------------------EDARFLFDKMQE 221

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
           R+L  WT ++ G  +     ++   F +MR EGV + D + + ++V ACA    +   + 
Sbjct: 222 RDLVTWTVMIGGYAECGKANESLVLFEKMREEGV-VPDKVAMVTVVFACAKLGAMHKARI 280

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           I   +    ++  + +  A++DMYAKC  + +A++IF RM  K+V+SW+++I     HGQ
Sbjct: 281 IDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ 340

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
             + L L+  M+S+G+ P+++T   L+YAC +   + + R++  +    +G+  +L    
Sbjct: 341 GRKALDLFRMMLSSGMLPDKITLASLLYACINCRNLTQVRQV-HAQASVHGMLQNLIVAN 399

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            L+   S    LD+A  L   M    D  +W+ ++  
Sbjct: 400 KLVHFYSYYRALDDAYGLFDGMCVR-DSVSWSVMVGG 435



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 150/303 (49%), Gaps = 34/303 (11%)

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
           L+N V    ++  Y+      DA  +F+   VR+   W+ +V G  +  + I+ F +F E
Sbjct: 110 LENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRE 169

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           + R G    D   L  ++ AC +   L++                     A+VDMY KC 
Sbjct: 170 LIRCGAR-PDNYTLPFVIRACRDLKNLQM---------------------ALVDMYVKCR 207

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
           +I  A+ +F +M+ +D+V+WT +I G A+ G+A E+L L+++M   GV P++V  V +++
Sbjct: 208 EIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTVVF 267

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQ----HYTCLLDLLSRSGHLDEAENLIKAMPF 403
           AC+ +G + K R     +I+DY      Q      T ++D+ ++ G ++ A  +   M  
Sbjct: 268 ACAKLGAMHKAR-----IIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRME- 321

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
           E +  +W+A+++A  +H        +   +LS     P    L S +YA     +++++V
Sbjct: 322 EKNVISWSAMIAAYGYHGQGRKALDLFRMMLS-SGMLPDKITLASLLYACINC-RNLTQV 379

Query: 464 RKL 466
           R++
Sbjct: 380 RQV 382


>gi|449443909|ref|XP_004139718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/612 (38%), Positives = 354/612 (57%), Gaps = 27/612 (4%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL----VQYAHHLLEEMPQRDHVSWASILT 77
           +K LHA  IK G  Q    P T  +    C      + YA  +  +MP+ +   W +IL 
Sbjct: 35  LKQLHAIFIKTGQIQD---PLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILR 91

Query: 78  AYNQAN---LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134
              + N   L  + + +FS ML   +++P+ F F S++KAC      R GKQ+H   V  
Sbjct: 92  VLAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKF 151

Query: 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVF--------DSIKLK--------NSVSWTAML 178
            F +D+ V S+LV MY  C +  +A ++F         S +++        N V W  M+
Sbjct: 152 GFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMI 211

Query: 179 SAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238
               R G  K A  +F++ P R++  W  ++SG  Q+ + I+A   F EM+   +D  + 
Sbjct: 212 DGQVRLGDIKSAKNLFDEMPQRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNID-PNY 270

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
           + L S++ A A    LELGK IH        E    + +A+VDMY+KC  I  A  +F  
Sbjct: 271 VTLVSVLPAIARIGALELGKWIHLYAGKNKIEIDDVLGSALVDMYSKCGSIDEALQVFET 330

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
           + +++ ++W++II   A HG+AE+ +  +  M  AGV PN+V ++G++ ACSH GLV +G
Sbjct: 331 LPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEG 390

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
           R  F  M++  G+ P ++HY C++DLL R+GHL+EAE LI+ MP EPD+  W ALL ACK
Sbjct: 391 RSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACK 450

Query: 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGY 478
            H+N +MG RVA  L+ L P D  SY+ LSN+YAS   W+ V++VR  M  M+++K+PG 
Sbjct: 451 MHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGC 510

Query: 479 SYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQ 538
           S+IE     H F   + SH    EI  +L E+  +++  GY P+T  V  + +++E+ R 
Sbjct: 511 SWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARA 570

Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
           L +HSE++AVA+GL+ + P   L++VKNLR+C DCH  +K+IS I KR+I+VRD  R+H 
Sbjct: 571 LQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQ 630

Query: 599 FKDGKCSCNDFW 610
           F+ G CSC D+W
Sbjct: 631 FEHGSCSCMDYW 642


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata]
          Length = 1047

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/603 (38%), Positives = 341/603 (56%), Gaps = 37/603 (6%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L+ C R       + +H+QIIK        + + LID Y K   +  A  +L     +D 
Sbjct: 480  LKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDV 539

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDK-LQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW +++  Y Q N   K ++ F  ML  D+ ++ D     + V AC  L A + G+Q+H
Sbjct: 540  VSWTTMIAGYTQYNFDDKALTTFRQML--DRGIRSDEVGLTNAVSACAGLQALKEGQQIH 597

Query: 129  ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
            A   +S F  D   +++LV +Y+KCG                                 +
Sbjct: 598  AQACVSGFSSDLPFQNALVTLYSKCG-------------------------------NIE 626

Query: 189  DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            +A   FEQ    +   W ALVSG  QS N  +A   F  M REG+D  +     S V A 
Sbjct: 627  EAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGID-SNNFTFGSAVKAA 685

Query: 249  ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
            +  A ++ GKQ+H ++   GY+S   + NAI+ MYAKC  I  AK  F  +  K+ VSW 
Sbjct: 686  SETANMKQGKQVHAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWN 745

Query: 309  SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            ++I   ++HG   E L  +D+M+ + V+PN VT VG++ ACSH+GLV KG + F+SM  +
Sbjct: 746  AMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTE 805

Query: 369  YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
            YG+ P  +HY C++D+L+R+G L  A++ I  MP EPD   W  LLSAC  H+N E+G  
Sbjct: 806  YGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEF 865

Query: 429  VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
             A+HLL L+PED ++Y+LLSN+YA    W      R+ M    VKKEPG S+IE     H
Sbjct: 866  AAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIH 925

Query: 489  IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
             FY G+ +HPL DEI E   +L       GYV D  S+L +++Q++K+  +F HSE+LA+
Sbjct: 926  SFYVGDQNHPLADEIHEYFKDLTKRASEIGYVQDCFSLLSELQQEQKDPTIFIHSEKLAI 985

Query: 549  AYGLLKSVPGTV-LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
            ++GLL S+P T+ + V+KNLRVC DCH  +K +S+++ REI+VRDA R+HHF+ G CSC 
Sbjct: 986  SFGLL-SLPATMPINVMKNLRVCNDCHDWIKFVSKVSNREIIVRDAYRFHHFEGGACSCK 1044

Query: 608  DFW 610
            D+W
Sbjct: 1045 DYW 1047



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 114/424 (26%), Positives = 191/424 (45%), Gaps = 43/424 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C + +     + LH  ++KLG      + N L+  Y     +  A H+   M QRD 
Sbjct: 278 LSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDA 337

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V++ +++   +Q    +K + +F  M  LD L+PD    ASLV AC S G    G+Q+HA
Sbjct: 338 VTYNTLINGLSQCGYGEKAMELFKRM-QLDGLEPDSNTLASLVVACSSDGTLFSGQQLHA 396

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 F  +D ++ +L+++YAKC     A   F   +++N V W  ML AY      ++
Sbjct: 397 YTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRN 456

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           +  IF Q  +  +                                + +     SI+  C 
Sbjct: 457 SFRIFRQMQIEEI--------------------------------VPNQYTYPSILKTCI 484

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LELG+QIH  +I   ++   ++ + ++DMYAK   +  A DI  R   KDVVSWT+
Sbjct: 485 RLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTT 544

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G  Q+   ++ L  + +M+  G++ +EV     + AC+ +  + +G+++        
Sbjct: 545 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS- 603

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP----DEPTWAALLSACKHHRNTEM 425
           G +  L     L+ L S+ G+++EA      + FE     D   W AL+S  +   N E 
Sbjct: 604 GFSSDLPFQNALVTLYSKCGNIEEA-----YLAFEQTEAGDNIAWNALVSGFQQSGNNEE 658

Query: 426 GTRV 429
             RV
Sbjct: 659 ALRV 662



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 121/484 (25%), Positives = 225/484 (46%), Gaps = 75/484 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH+QI+KLG      L   L+D Y     +  A  + +EMP+R   +W  ++      
Sbjct: 88  RKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASR 147

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKAC-GSLGATRLGKQVHACFVLSPFCDDDV 141
           +L  K   +F  M+  + + P+   F+ +++AC G   A  + +Q+HA  +        +
Sbjct: 148 SLSGKVFCLFGRMVN-ENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTI 206

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V + L+D+Y++ G  + AR VFD + LK+  S                            
Sbjct: 207 VCNPLIDLYSRNGFVDRARRVFDGLYLKDHSS---------------------------- 238

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
              W A++SGL ++  E++A   F +M   G+ +  P   SS++ AC     LE+G+Q+H
Sbjct: 239 ---WVAMISGLSKNECEVEAIRLFCDMYVLGI-MPTPYAFSSVLSACKKIESLEIGEQLH 294

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           GLV+ LG+ S  ++ NA+V +Y     +I+A+ IF  M ++D V++ ++I G +Q G  E
Sbjct: 295 GLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGE 354

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK------------------ 363
           + + L+  M   G++P+  T   L+ ACS  G +  G++L                    
Sbjct: 355 KAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALL 414

Query: 364 ------SMIE---DYGITPSLQHYTCLLDLLSRSGHLDEAEN---LIKAMPFE---PDEP 408
                 S IE   +Y +   +++      +L   G LD+  N   + + M  E   P++ 
Sbjct: 415 NLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQY 474

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
           T+ ++L  C    + E+G ++ + ++       +S+ L  N Y  + +    +K+ KL +
Sbjct: 475 TYPSILKTCIRLGDLELGEQIHSQII------KTSFQL--NAYVCSVLIDMYAKLGKLDT 526

Query: 469 VMEV 472
             ++
Sbjct: 527 AWDI 530



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 97/410 (23%), Positives = 195/410 (47%), Gaps = 40/410 (9%)

Query: 10  LRVCARHQIAL-TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L  C    +A   V+ +HA+II  GL +   + N LID Y +   V  A  + + +  +D
Sbjct: 176 LEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKD 235

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
           H SW ++++  ++     + I +F  M  L  + P  + F+S++ AC  + +  +G+Q+H
Sbjct: 236 HSSWVAMISGLSKNECEVEAIRLFCDMYVLG-IMPTPYAFSSVLSACKKIESLEIGEQLH 294

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              +   F  D  V ++LV +Y   G   +A  +F ++  +++V++  +++  ++ G  +
Sbjct: 295 GLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGE 354

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            AME+F++                               M+ +G++  D   L+S+V AC
Sbjct: 355 KAMELFKR-------------------------------MQLDGLE-PDSNTLASLVVAC 382

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           ++   L  G+Q+H     LG+ S   I  A++++YAKCSDI  A + F     ++VV W 
Sbjct: 383 SSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWN 442

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            ++V          +  ++ +M    + PN+ T+  ++  C  +G +  G ++   +I+ 
Sbjct: 443 VMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK- 501

Query: 369 YGITPSLQHYTC--LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
              +  L  Y C  L+D+ ++ G LD A +++       D  +W  +++ 
Sbjct: 502 --TSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA-GKDVVSWTTMIAG 548



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 1/163 (0%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L+ G+++H  ++ LG+++   +S  ++D Y    D+  A  +F  M  + + +W  +I  
Sbjct: 84  LDEGRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKE 143

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
            A    + +   L+  MV+  V PNE TF G++ AC    +     +   + I   G+  
Sbjct: 144 LASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGK 203

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           S      L+DL SR+G +D A  +   + +  D  +W A++S 
Sbjct: 204 STIVCNPLIDLYSRNGFVDRARRVFDGL-YLKDHSSWVAMISG 245


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 229/613 (37%), Positives = 349/613 (56%), Gaps = 7/613 (1%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S Y    +   RH      +  HAQI+  GL     L   ++  Y     +  A  + + 
Sbjct: 78  SSYAPIFQFLTRHNFIKLGQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDR 137

Query: 64  MPQRDHVSWASILTAYNQ---ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
           +     + + SI+ AY +          +  ++ M  L  L  D+F    ++K+C  L  
Sbjct: 138 IDNPSSLLYNSIIRAYTRHGXXXXXXXXLEAYARMHFLGLLG-DNFTLPFVLKSCADLSR 196

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
             +G+ VH   +      D  V +SL+DMY KCG+  +AR +FD + +++  SW A+++ 
Sbjct: 197 VCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAG 256

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           Y + G    A ++FE+   RN+  WTA++SG  Q+     A   F EM ++G ++    V
Sbjct: 257 YMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWV 316

Query: 241 -LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
            + S++ ACA  A LE G++IH     +G      +  A+  MYAKC  ++ A+  F  +
Sbjct: 317 TIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMI 376

Query: 300 RR--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357
            +  K++++W ++I   A HG   E +++++ M+ AGV+P+ VTF+GL+  CSH GL+  
Sbjct: 377 AQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDA 436

Query: 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417
           G   F  M   + + P ++HY C++DLL R+G L EA+ LI  MP +     W ALL+AC
Sbjct: 437 GLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAAC 496

Query: 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPG 477
           + HRN E+    A  L  L+P++  +Y+LLSN+YA A MW+ V K+R L+    +KK PG
Sbjct: 497 RSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPG 556

Query: 478 YSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKER 537
            S+IE    SH+F   + SHP   EI++ L  L  ++K  GY+PDTS VLHD+ ++EKE 
Sbjct: 557 CSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMAGYIPDTSFVLHDISEEEKEY 616

Query: 538 QLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYH 597
            L  HSE+LA+A+GLL + PG VLRV KNLR+CGDCH   K IS+I +REI+VRD  R+H
Sbjct: 617 NLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAATKFISKIYEREIIVRDLNRFH 676

Query: 598 HFKDGKCSCNDFW 610
            FKDG CSC D+W
Sbjct: 677 CFKDGSCSCGDYW 689


>gi|449475532|ref|XP_004154482.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 642

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 233/612 (38%), Positives = 354/612 (57%), Gaps = 27/612 (4%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL----VQYAHHLLEEMPQRDHVSWASILT 77
           +K LHA  IK G  Q    P T  +    C      + YA  +  +MP+ +   W +IL 
Sbjct: 35  LKQLHAIFIKTGQIQD---PLTAAEVIKFCAFSSRDIDYARAVFRQMPEPNCFCWNTILR 91

Query: 78  AYNQAN---LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134
              + N   L  + + +FS ML   +++P+ F F S++KAC      R GKQ+H   V  
Sbjct: 92  ILAETNDEHLQSEALMLFSAMLCDGRVKPNRFTFPSVLKACARASRLREGKQIHGLIVKF 151

Query: 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVF--------DSIKLK--------NSVSWTAML 178
            F +D+ V S+LV MY  C +  +A ++F         S +++        N V W  M+
Sbjct: 152 GFHEDEFVISNLVRMYVMCAVMEDAYSLFCKNVVDFDGSCQMELDKRKQDGNVVLWNIMI 211

Query: 179 SAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238
               R G  K A  +F++ P R++  W  ++SG  Q+ + I+A   F EM+   +D  + 
Sbjct: 212 DGQVRLGDIKSAKNLFDEMPPRSVVSWNVMISGYAQNGHFIEAINLFQEMQSSNID-PNY 270

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
           + L S++ A A    LELGK IH        E    + +A+VDMY+KC  I  A  +F  
Sbjct: 271 VTLVSVLPAIARIGALELGKWIHLYAGKNKVEIDDVLGSALVDMYSKCGSIDKALQVFET 330

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
           + +++ ++W++II   A HG+AE+ +  +  M  AGV PN+V ++G++ ACSH GLV +G
Sbjct: 331 LPKRNAITWSAIIGAFAMHGRAEDAIIHFHLMGKAGVTPNDVAYIGILSACSHAGLVEEG 390

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
           R  F  M++  G+ P ++HY C++DLL R+GHL+EAE LI+ MP EPD+  W ALL ACK
Sbjct: 391 RSFFSHMVKVVGLQPRIEHYGCMVDLLGRAGHLEEAEELIRNMPIEPDDVIWKALLGACK 450

Query: 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGY 478
            H+N +MG RVA  L+ L P D  SY+ LSN+YAS   W+ V++VR  M  M+++K+PG 
Sbjct: 451 MHKNLKMGERVAETLMELAPHDSGSYVALSNLYASLGNWEAVARVRLKMKGMDIRKDPGC 510

Query: 479 SYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQ 538
           S+IE     H F   + SH    EI  +L E+  +++  GY P+T  V  + +++E+ R 
Sbjct: 511 SWIEIHGIIHEFLVEDDSHSKAKEIQAMLGEMSMKLRSNGYRPNTLEVFLNTDEQERARA 570

Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
           L +HSE++AVA+GL+ + P   L++VKNLR+C DCH  +K+IS I KR+I+VRD  R+H 
Sbjct: 571 LQYHSEKIAVAFGLISTAPQHPLKIVKNLRICEDCHASLKLISLIYKRQIIVRDRKRFHQ 630

Query: 599 FKDGKCSCNDFW 610
           F+ G CSC D+W
Sbjct: 631 FEHGSCSCMDYW 642


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/651 (35%), Positives = 370/651 (56%), Gaps = 50/651 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LRVC   +     K +H+++I  G      + N LID Y KCD  +    + +EM +R+ 
Sbjct: 182 LRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQ 241

Query: 70  VSWASILTAYNQANLPQKTISIFSTML-ALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
           V+W SI++A  Q       + +F  M  + D +QPD F F +L+  C +      G+Q+H
Sbjct: 242 VTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIH 301

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           A  + +    + +V++ LV MY++CG  N A+ +F+ +  +N+ SW +M+  Y ++G  +
Sbjct: 302 AHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQ 361

Query: 189 DAMEIFEQAPVRNL----FLWTALVSGLV-----QSRNEIDAFYSFIEMRREGVDIV--- 236
           +A+ +F+Q  +  +    F  ++++S  V     Q   E+  F     M  EG+  V   
Sbjct: 362 EALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLV 421

Query: 237 ------------------------DPLVLSSIVGACANFAV--------LELGKQI--HG 262
                                   +  + +SI+   AN  +        LE+ +    + 
Sbjct: 422 DMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYD 481

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           ++  +   + L +  A+VDMY+KC  I  A+ +F  M  K++VSW ++I G ++HG ++E
Sbjct: 482 VLTMVTIVNLLVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKE 541

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L LY+EM   G+ PNEVTF+ ++ ACSH GLV +G ++F SM EDY I    +HYTC++
Sbjct: 542 ALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMV 601

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G L++A+  ++ MP EP+  TW ALL AC+ H++ +MG   A  L  L P++P 
Sbjct: 602 DLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFELDPQNPG 661

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            Y+++SN+YA+A  W+ V  +R++M +  VKK+PG S+IE      IF+AG  +HP  +E
Sbjct: 662 PYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINSEIQIFHAGSKTHPKTEE 721

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLH---DMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
           I+  L  L  + K  GY+PDTS +L    D++++E+E  L  HSERLA++ GL+     +
Sbjct: 722 IYNNLRHLTLQSKGLGYIPDTSFILQNVKDIKEEEEEEYLLQHSERLALSLGLISLPKKS 781

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +RV KNLR+CGDCH   K IS+IT R I+ RD  R+HHF++GKCSC D+W
Sbjct: 782 TIRVFKNLRICGDCHTATKFISKITGRRIIARDTNRFHHFENGKCSCGDYW 832



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 209/426 (49%), Gaps = 47/426 (11%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAY---GKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           K++H Q+I  G +    L   ++  Y   G  D + YA  L EEMP+R+  +W +++ AY
Sbjct: 91  KSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILAY 150

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            + +   +   IF  ML +  + PD+F FAS ++ CG+L +   GKQVH+  +   F  D
Sbjct: 151 ARVDDYMEAWGIFDRMLKIG-VCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGD 209

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             V ++L+DMYAKC    +   VFD +  +N V+W +++SA A+ G   DA+ +F +   
Sbjct: 210 TFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLR--- 266

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                     ++   +G+   D    ++++  CAN      G+Q
Sbjct: 267 --------------------------MQESEDGIQ-PDQFTFTTLLTLCANQRNDNQGRQ 299

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           IH  +I       + +   +V MY++C  +  AK+IF RM  ++  SW S+I G  Q+G+
Sbjct: 300 IHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGE 359

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL----FKSMIEDYGITPSL 375
            +E L L+ +M   G+KP+  +   ++ +C  +    KGR+L     ++ +E+ GI   L
Sbjct: 360 TQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGI---L 416

Query: 376 QHYTCLLDLLSRSGHLDEAENLI-KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           Q    L+D+ ++ G +D A  +  + +  + +   W ++L+    + N  +     NH L
Sbjct: 417 Q--VVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAG---YANKGLKKESFNHFL 471

Query: 435 SLKPED 440
            +   D
Sbjct: 472 EMLESD 477



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 159/339 (46%), Gaps = 41/339 (12%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN---ARAVFD 164
           ++SL++ C    + + GK +H   + + +  D  + + ++ +YA+ G  ++   AR +F+
Sbjct: 74  YSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFE 133

Query: 165 SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS 224
            +  +N  +W  M+ AYAR     +A  IF++                            
Sbjct: 134 EMPERNLTAWNTMILAYARVDDYMEAWGIFDR---------------------------- 165

Query: 225 FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284
              M + GV   D    +S +  C      + GKQ+H  +IA G++   F+ NA++DMYA
Sbjct: 166 ---MLKIGV-CPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYA 221

Query: 285 KCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA--GVKPNEVTF 342
           KC D  +   +F  M  ++ V+W SII   AQ G   + L L+  M  +  G++P++ TF
Sbjct: 222 KCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTF 281

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
             L+  C++     +GR++   +I    IT ++   T L+ + S  G L+ A+ +   M 
Sbjct: 282 TTLLTLCANQRNDNQGRQIHAHLIR-ANITKNIIVETELVHMYSECGRLNYAKEIFNRMA 340

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRVAN--HLLSLKPE 439
            E +  +W +++   + +  T+   R+     L  +KP+
Sbjct: 341 -ERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPD 378



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 48/242 (19%)

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS---DIIAA 292
           V+PL  SS++  C +    + GK IH  +I+ GY    ++   I+ +YA+     D+  A
Sbjct: 69  VNPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYA 128

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS-- 350
           + +F  M  +++ +W ++I+  A+     E   ++D M+  GV P+  TF   +  C   
Sbjct: 129 RKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGAL 188

Query: 351 ---------HVGLVGKG------------------------RKLFKSMIEDYGITPSLQH 377
                    H  L+  G                         K+F  M E   +T     
Sbjct: 189 RSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVT----- 243

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMP-----FEPDEPTWAALLSACKHHRNTEMGTRVANH 432
           +  ++   ++ GH ++A  L   M       +PD+ T+  LL+ C + RN   G ++  H
Sbjct: 244 WNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAH 303

Query: 433 LL 434
           L+
Sbjct: 304 LI 305


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 226/605 (37%), Positives = 348/605 (57%), Gaps = 33/605 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y++ L  C         K +HA I++   H    +   L   Y KC   + A  + E + 
Sbjct: 233 YMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLS 292

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            RD ++W +++  +  +   ++    F  ML  + + PD   + +++ AC   G    GK
Sbjct: 293 YRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLE-EGVAPDRATYTTVLSACARPGGLARGK 351

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++HA                     AK GL ++ R  F +          A+++ Y+++G
Sbjct: 352 EIHA-------------------RAAKDGLVSDVR--FGN----------ALINMYSKAG 380

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             KDA ++F++ P R++  WT L+         +++F +F +M ++GV   + +    ++
Sbjct: 381 SMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVK-ANKITYMCVL 439

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            AC+N   L+ GK+IH  V+  G  + L ++NA++ MY KC  +  A  +F  M  +DVV
Sbjct: 440 KACSNPVALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRVFEGMSMRDVV 499

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +W ++I G  Q+G+  E L  Y+ M S G++PN  TFV ++ AC    LV +GR+ F  M
Sbjct: 500 TWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVCNLVEEGRRQFAFM 559

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
            +DYGI P+ +HY C++D+L+R+GHL EAE++I  +P +P    W ALL+AC+ H N E+
Sbjct: 560 SKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAAMWGALLAACRIHCNVEI 619

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G R A H L L+P++   Y+ LS +YA+A MW+ V+K+RK M    VKKEPG S+IE   
Sbjct: 620 GERAAEHCLKLEPQNAGLYVSLSAIYAAAGMWRDVAKLRKFMKERGVKKEPGRSWIEIAG 679

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H F A + SHP   EI+  L  L  +MK  GYVPDT  V+HD++ + KER +  HSE+
Sbjct: 680 EVHSFVARDQSHPRTQEIYAELETLKKQMKSLGYVPDTRFVMHDLDDEGKERAVCHHSEK 739

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+AYGL+ + PGT +R+ KNLRVC DCH   K IS+ITKREI+ RDA R+HHFK+G+CS
Sbjct: 740 LAIAYGLISTPPGTPIRISKNLRVCTDCHTATKFISKITKREIIARDAHRFHHFKNGECS 799

Query: 606 CNDFW 610
           C D+W
Sbjct: 800 CGDYW 804



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 205/412 (49%), Gaps = 39/412 (9%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  L+ C + +     K +H  I++ G+     + NTL+  Y  C  V  A  L ++  
Sbjct: 31  YVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFS 90

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            +  VSW  +++ Y    L Q+  ++F T++  ++L+PD F F S++ AC S      G+
Sbjct: 91  NKSVVSWNVMISGYAHRGLAQEAFNLF-TLMQQERLEPDKFTFVSILSACSSPAVLNWGR 149

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++H   + +   +D  V ++L+ MYAKCG   +AR VFD++  ++ VSWT +  AYA SG
Sbjct: 150 EIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESG 209

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP--LVLSS 243
             +++++ +                 ++Q R                   V P  +   +
Sbjct: 210 YGEESLKTYH---------------AMLQER-------------------VRPSRITYMN 235

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++ AC + A LE GKQIH  ++   Y S + +S A+  MY KC     A+++F  +  +D
Sbjct: 236 VLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRD 295

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           V++W ++I G    GQ EE    +  M+  GV P+  T+  ++ AC+  G + +G+++  
Sbjct: 296 VIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHA 355

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
              +D G+   ++    L+++ S++G + +A  +   MP + D  +W  LL 
Sbjct: 356 RAAKD-GLVSDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLLG 405



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 163/349 (46%), Gaps = 65/349 (18%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           Q D + +  L+++C       +GKQVH   +      +  + ++L+ +YA CG  N AR 
Sbjct: 25  QVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQ 84

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +FD    K+ VSW  M+S YA  G  ++A  +F               + + Q R E D 
Sbjct: 85  LFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLF---------------TLMQQERLEPDK 129

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
           F +F+                SI+ AC++ AVL  G++IH  V+  G  +   + NA++ 
Sbjct: 130 F-TFV----------------SILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALIS 172

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MYAKC  +  A+ +F  M  +D VSWT++    A+ G  EE+L  Y  M+   V+P+ +T
Sbjct: 173 MYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRIT 232

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIE-----DYGITPSLQH--------------YTCL- 381
           ++ ++ AC  +  + KG+++   ++E     D  ++ +L                + CL 
Sbjct: 233 YMNVLSACGSLAALEKGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLS 292

Query: 382 -LDLLS---------RSGHLDEAENLIKAMPFE---PDEPTWAALLSAC 417
             D+++          SG L+EA      M  E   PD  T+  +LSAC
Sbjct: 293 YRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSAC 341


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/630 (36%), Positives = 358/630 (56%), Gaps = 41/630 (6%)

Query: 19  ALTVKTLHAQI-IKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILT 77
           A T+K LH++I I   LH    L   L+ AY  C    Y  H+ +E+  ++ V +  ++ 
Sbjct: 51  AKTLKKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIR 110

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
           +Y    L Q  + +F TM A     PD++ +  ++KAC   G   +G Q+H   V     
Sbjct: 111 SYVNNGLYQDALLVFKTM-ANQGFYPDNYTYPCVLKACSVSGNLWVGLQIHGAVVKLGLD 169

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA------M 191
            +  + + LV MY KC   + AR V D +  ++ VSW +M++ YA++GR  DA      M
Sbjct: 170 MNLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREM 229

Query: 192 EIFEQAP----------------------VRNLFL---------WTALVSGLVQSRNEID 220
           E  +  P                      V+++F+         W  +++  V +    +
Sbjct: 230 EDLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNE 289

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
           A   +++M+  GV+  D + +SS++ AC + +   LG++IH  V        L + NA++
Sbjct: 290 AVDLYLQMQVHGVE-PDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALI 348

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           DMYAKC  +  A+ +F +M  +DVVSWTS+I      GQ ++ +AL+ +M  +G  P+ +
Sbjct: 349 DMYAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWI 408

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
            FV ++ ACSH GLV +GR  F  M E YGITP ++HY C++DLL R+G +DEA +L + 
Sbjct: 409 AFVSVLAACSHAGLVDEGRYCFNLMAE-YGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQ 467

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           MP EP+E  W +LLSAC+ + +  +    A+HL  L PE    Y+LLSN+YA A  WQ V
Sbjct: 468 MPMEPNERVWGSLLSACRVYSSMNIALLAADHLFQLAPEQSGYYVLLSNIYAKAGRWQDV 527

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
             VR +M+   +KK PG S +E     + F AG+ SH    EI++ L  L   MK  GY+
Sbjct: 528 ETVRSIMNSKGIKKIPGNSNVEINDHVYTFLAGDQSHTQSKEIYKALGVLVGRMKELGYM 587

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           P+T S LHD+E+++KE  L  HSE+LA+ + +L + PG+ +R+ KN+RVCGDCH+  K+I
Sbjct: 588 PETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTKPGSTIRITKNIRVCGDCHVATKLI 647

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           S+I +REI++RD  R+HHF+DG CSC D+W
Sbjct: 648 SKIAEREIIIRDTHRFHHFRDGVCSCGDYW 677



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 81/175 (46%), Gaps = 8/175 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C     A+  + +H  + +  L     L N LID Y KC  ++ A  + ++M  RD 
Sbjct: 313 LPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFDQMMFRDV 372

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK---Q 126
           VSW S+++AY  +   +  +++F  M       PD   F S++ AC   G    G+    
Sbjct: 373 VSWTSMISAYGMSGQGKDAVALFKKMRD-SGFTPDWIAFVSVLAACSHAGLVDEGRYCFN 431

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
           + A + ++P  +     + +VD+  + G  + A  +   + ++ N   W ++LSA
Sbjct: 432 LMAEYGITPGIEH---YNCMVDLLGRAGKIDEAYHLTRQMPMEPNERVWGSLLSA 483


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 217/598 (36%), Positives = 344/598 (57%), Gaps = 41/598 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H Q    G      + + LID Y KC  +  A  L +E+P+R+ VSW S+++ Y Q 
Sbjct: 106 KQIHQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQN 165

Query: 83  NLPQKTISIFSTMLALDKLQPDHF----------VFASLVKACGSLGATRLGKQVHACFV 132
              ++ + +F   L +D+   D            +   ++ AC  +    + + VH   V
Sbjct: 166 ERAREAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAV 225

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
              F     V ++L+D YAKCG  + +R VFD ++  +  SW ++++ YA++G       
Sbjct: 226 KKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGL------ 279

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
                                     ++AF  F +M + G    + + LS+++ ACA+  
Sbjct: 280 -------------------------SVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSG 314

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
            L++GK IH  V+ +  E  L +  +IVDMY KC  +  A+  F R++RK+V SWT ++ 
Sbjct: 315 ALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVA 374

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G   HG  +E + ++ EM+  G+KPN +TFV ++ ACSH GL+ +G   F  M  ++ + 
Sbjct: 375 GYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVE 434

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
           P ++HY+C++DLL R+G+L EA  LI+ M  +PD   W +LL AC+ H+N E+G   A  
Sbjct: 435 PGIEHYSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARK 494

Query: 433 LLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYA 492
           L  L P +   Y+LLSN+YA A  W  V ++R LM    + K PGYS +E     H+F  
Sbjct: 495 LFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPGYSIVEHKGRVHVFLV 554

Query: 493 GETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGL 552
           G+  HP  ++I+E L EL+ +++  GY+P+ +SVL+D++ +EK   L  HSE+LAVA+G+
Sbjct: 555 GDKEHPQHEKIYEYLDELNVKLQEVGYMPNVTSVLYDVDVEEKGMVLRVHSEKLAVAFGI 614

Query: 553 LKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + SVPG+V++++KNLR+CGDCH  +K+IS+I  REIV+RD+ R+HHFKDG CSC D+W
Sbjct: 615 MNSVPGSVIQIIKNLRICGDCHFAIKLISKIVNREIVIRDSKRFHHFKDGLCSCGDYW 672



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 207/417 (49%), Gaps = 43/417 (10%)

Query: 71  SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC 130
           SW SI+  + ++    + +  FS+M  L  L P+   F   +K+C SL     GKQ+H  
Sbjct: 53  SWNSIIADFARSGDSLQALYAFSSMRKLS-LHPNRSTFPCTIKSCSSLYDLCAGKQIHQQ 111

Query: 131 FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
             +  +  D  V S+L+DMY+KCG  N+AR +FD I  +N VSWT+M+S Y ++ R ++A
Sbjct: 112 AFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREA 171

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
           + +F++      FL            +E D  Y  I         VD ++L  ++ ACA 
Sbjct: 172 VFLFKE------FLLV----------DETD--YDEIVGVGV---GVDSVLLGCVISACAR 210

Query: 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
             V  + + +HGL +  G+E CL + N ++D YAKC +I  ++ +F  M   DV SW S+
Sbjct: 211 VCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSL 270

Query: 311 IVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           I   AQ+G + E  +L+ +MV  G V+ N VT   ++ AC+H G +  G+ +   +++  
Sbjct: 271 IAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVK-M 329

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            +  +L   T ++D+  + G ++ A      +    +  +W  +++    H + +   +V
Sbjct: 330 ELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLK-RKNVKSWTVMVAGYGMHGHGKEAMKV 388

Query: 430 ANHLL--SLKPEDPSSYILLSNVYASAAM-------WQHVSKVRKLMSVMEVKKEPG 477
              ++   +KP    +YI   +V A+ +        W   +K++      E   EPG
Sbjct: 389 FYEMIRCGIKP----NYITFVSVLAACSHAGLLKEGWHWFNKMK-----CEFDVEPG 436



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 100/187 (53%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CAR  +    + +H   +K G      + NTL+DAY KC  +  +  + + M + D 
Sbjct: 205 ISACARVCVKSVTECVHGLAVKKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDV 264

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW S++  Y Q  L  +  S+FS M+   +++ +    ++++ AC   GA ++GK +H 
Sbjct: 265 CSWNSLIAVYAQNGLSVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHD 324

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V     D+ VV +S+VDMY KCG    AR  FD +K KN  SWT M++ Y   G  K+
Sbjct: 325 QVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKE 384

Query: 190 AMEIFEQ 196
           AM++F +
Sbjct: 385 AMKVFYE 391



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 111/226 (49%), Gaps = 14/226 (6%)

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           +++ W ++++   +S + + A Y+F  MR+  +   +       + +C++   L  GKQI
Sbjct: 50  SVYSWNSIIADFARSGDSLQALYAFSSMRKLSLH-PNRSTFPCTIKSCSSLYDLCAGKQI 108

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H      GY S +F+++A++DMY+KC  +  A+ +F  +  ++VVSWTS+I G  Q+ +A
Sbjct: 109 HQQAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERA 168

Query: 321 EETLAL-----------YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
            E + L           YDE+V  GV  + V    +I AC+ V  V    +    +    
Sbjct: 169 REAVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARV-CVKSVTECVHGLAVKK 227

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
           G    L     L+D  ++ G +  +  +   M  E D  +W +L++
Sbjct: 228 GFEGCLAVGNTLMDAYAKCGEISVSRKVFDGME-ETDVCSWNSLIA 272



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 84/177 (47%), Gaps = 11/177 (6%)

Query: 10  LRVCARHQIALTV-KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L  CA H  AL + K +H Q++K+ L     +  +++D Y KC  V+ A    + + +++
Sbjct: 307 LLACA-HSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMYCKCGRVEMARKAFDRLKRKN 365

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG---- 124
             SW  ++  Y      ++ + +F  M+    ++P++  F S++ AC   G  + G    
Sbjct: 366 VKSWTVMVAGYGMHGHGKEAMKVFYEMIRCG-IKPNYITFVSVLAACSHAGLLKEGWHWF 424

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
            ++   F + P  +     S +VD+  + G    A  +   +K+K + + W ++L A
Sbjct: 425 NKMKCEFDVEPGIEH---YSCMVDLLGRAGYLKEAYGLIQEMKVKPDFIVWGSLLGA 478



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 64/125 (51%), Gaps = 3/125 (2%)

Query: 293 KDIFGR-MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           + +FG+ + +  V SW SII   A+ G + + L  +  M    + PN  TF   I +CS 
Sbjct: 39  RSMFGKYVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSS 98

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
           +  +  G+++ +     +G    +   + L+D+ S+ G+L++A  L   +P E +  +W 
Sbjct: 99  LYDLCAGKQIHQQAFV-FGYGSDIFVASALIDMYSKCGYLNDARKLFDEIP-ERNVVSWT 156

Query: 412 ALLSA 416
           +++S 
Sbjct: 157 SMISG 161


>gi|297741272|emb|CBI32403.3| unnamed protein product [Vitis vinifera]
          Length = 658

 Score =  443 bits (1140), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/627 (37%), Positives = 354/627 (56%), Gaps = 43/627 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LHA ++  G  Q   +   L++ Y     V  +    +++PQ+D  +W S+++AY   
Sbjct: 36  KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHN 95

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + I  F  +L + +++PD + F  ++KACG+L     G+++H       F  +  V
Sbjct: 96  GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFV 152

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA---------------------- 180
            +SL+ MY++ G    AR++FD +  ++  SW AM+S                       
Sbjct: 153 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGI 212

Query: 181 -----------------YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
                            YA+ G    A ++FE  PV+++  W  L++G  Q+    +A  
Sbjct: 213 KMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIE 272

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            +  M      I +     SI+ A A+   L+ G +IHG VI       +F++  ++D+Y
Sbjct: 273 VYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVY 332

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
            KC  ++ A  +F ++ ++  V+W +II     HG AE+TL L+ EM+  GVKP+ VTFV
Sbjct: 333 GKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFV 392

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            L+ ACSH G V +G+  F+ ++++YGI PSL+HY C++DLL R+G+L+ A + IK MP 
Sbjct: 393 SLLSACSHSGFVEEGKWCFR-LMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPL 451

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
           +PD   W ALL AC+ H N E+G   ++ L  +  ++   Y+LLSN+YA+   W+ V KV
Sbjct: 452 QPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKV 511

Query: 464 RKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDT 523
           R L     +KK PG+S IE  +   +FY G  SHP   EI+E L  L A+MK  GY+PD 
Sbjct: 512 RSLARERGLKKTPGWSTIEVNRKVDVFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDY 571

Query: 524 SSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRI 583
           S VL D+E+ EKE  L  HSERLA+A+G++ + P + +R+ KNLRVCGDCH   K ISRI
Sbjct: 572 SFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRI 631

Query: 584 TKREIVVRDATRYHHFKDGKCSCNDFW 610
           T+REIVVRD+ R+HHFKDG CSC D+W
Sbjct: 632 TQREIVVRDSNRFHHFKDGICSCGDYW 658



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 98/387 (25%), Positives = 173/387 (44%), Gaps = 56/387 (14%)

Query: 105 HFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFD 164
           +F+F S  K       T   K +HA  V++       + + LV++YA  G  + +R  FD
Sbjct: 23  NFLFDSSTK-------TPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFD 75

Query: 165 SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ--------------APV----------R 200
            I  K+  +W +M+SAY  +G   +A+  F Q               PV          R
Sbjct: 76  QIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVDGR 135

Query: 201 NL--------FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL--------VLSSI 244
            +        F W   V+    S   + + + F  + R   D + P         ++S +
Sbjct: 136 KIHCWAFKLGFQWNVFVAA---SLIHMYSRFGFTGIARSLFDDM-PFRDMGSWNAMISGL 191

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           +        L++  ++    I + + + + I    VDMYAK   + +A  +F  +  KDV
Sbjct: 192 IQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVFVDMYAKLGLLDSAHKVFEIIPVKDV 251

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           +SW ++I G AQ+G A E + +Y  M     + PN+ T+V ++ A +HVG + +G K+  
Sbjct: 252 ISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHG 311

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
            +I+   +   +   TCL+D+  + G L +A +L   +P E    TW A++S    H + 
Sbjct: 312 RVIKT-NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQE-SSVTWNAIISCHGIHGHA 369

Query: 424 EMGTRVANHLL--SLKPEDPSSYILLS 448
           E   ++   +L   +KP+  +   LLS
Sbjct: 370 EKTLKLFGEMLDEGVKPDHVTFVSLLS 396


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 216/589 (36%), Positives = 348/589 (59%), Gaps = 2/589 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           ++LH   IK  +     + N+LI  Y  C  +  A  +   + ++D VSW S++  + Q 
Sbjct: 153 QSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQK 212

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P K + +F  M + D ++  H     ++ AC  +     G++V +    +    +  +
Sbjct: 213 GSPDKALELFKKMESED-VKASHVTMVGVLSACAKIRDLEFGRRVCSYIEENRVNVNLTL 271

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++++DMY KCG   +A+ +FD+++ K++V+WT ML  YA S   + A E+    P +++
Sbjct: 272 ANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAMPKKDI 331

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W AL+S   Q+    +A   F E++ +    ++ + L S + ACA    LELG+ IH 
Sbjct: 332 VAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELGRWIHS 391

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +   G +   ++++A++ MY+KC D+  A+++F  + ++DV  W+++I G A HG   E
Sbjct: 392 YIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMHGCGSE 451

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + ++ +M  A VKPN VTF  +  ACSH GLV +   LF  M   YGI P  +HY C++
Sbjct: 452 AVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKHYACIV 511

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+L RSG+L++A   I+AMP  P    W ALL ACK H N  +       LL L+P +  
Sbjct: 512 DVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELEPRNDG 571

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +++LLSN+YA +  W +VS++RK M V  +KKEPG S IE     H F +G+ +HP+ ++
Sbjct: 572 AHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEK 631

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKE-KERQLFWHSERLAVAYGLLKSVPGTVL 561
           ++  L E+  ++K  GY P+ S VL  +E++E KE+ L  HSE+LA+ YGL+ +     +
Sbjct: 632 VYGKLHEVMEKLKSNGYEPEMSHVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEAPKAI 691

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           RV+KNLR+CGDCH V K+IS++  REI+VRD  R+HHF++G+CSCNDFW
Sbjct: 692 RVIKNLRMCGDCHAVAKLISQLYNREIIVRDRYRFHHFRNGQCSCNDFW 740



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/450 (24%), Positives = 200/450 (44%), Gaps = 77/450 (17%)

Query: 14  ARHQIAL--------TVKTLHAQIIKLGLHQ--YGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           +RH I+L         +K  HA +I+ G+    Y       I A      ++YA  + +E
Sbjct: 31  SRHTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASKLFAIAALSSFASLEYARKVFDE 90

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD-KLQPDHFVFASLVKACGSLGATR 122
           +PQ +  +W +++ AY     P  +I  F  M++ + +  P+ + F  L+KA   + +  
Sbjct: 91  IPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAAAEVSSLS 150

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           LG+ +H   + S    D  V +SL+  Y  CG  ++A  VF +IK K+ VSW +M++ + 
Sbjct: 151 LGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFV 210

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           + G    A+E+F++                               M  E V     + + 
Sbjct: 211 QKGSPDKALELFKK-------------------------------MESEDVK-ASHVTMV 238

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            ++ ACA    LE G+++   +        L ++NA++DMY KC  I  AK +F  M  K
Sbjct: 239 GVLSACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEK 298

Query: 303 DVVSWTSIIVGTA-------------------------------QHGQAEETLALYDEM- 330
           D V+WT+++ G A                               Q+G+  E L ++ E+ 
Sbjct: 299 DNVTWTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQ 358

Query: 331 VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH 390
           +   +K N++T V  + AC+ VG +  GR +  S I+  GI  +    + L+ + S+ G 
Sbjct: 359 LQKNIKLNQITLVSTLSACAQVGALELGRWI-HSYIKKNGIKMNFYVTSALIHMYSKCGD 417

Query: 391 LDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           L++A  +  ++  + D   W+A++     H
Sbjct: 418 LEKAREVFNSVE-KRDVFVWSAMIGGLAMH 446



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 127/245 (51%), Gaps = 3/245 (1%)

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM-RREGVDIVDPLVLSSIVGAC 248
           A ++F++ P  N F W  L+       + + + ++F++M   E     +      ++ A 
Sbjct: 84  ARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQCYPNKYTFPFLIKAA 143

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A  + L LG+ +HG+ I     S +F++N+++  Y  C D+ +A  +F  ++ KDVVSW 
Sbjct: 144 AEVSSLSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWN 203

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           S+I G  Q G  ++ L L+ +M S  VK + VT VG++ AC+ +  +  GR++  S IE+
Sbjct: 204 SMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRDLEFGRRVC-SYIEE 262

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
             +  +L     +LD+ ++ G +++A+ L  AM  E D  TW  +L       + E    
Sbjct: 263 NRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAME-EKDNVTWTTMLDGYAISEDYEAARE 321

Query: 429 VANHL 433
           V N +
Sbjct: 322 VLNAM 326



 Score = 43.1 bits (100), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 77/176 (43%), Gaps = 9/176 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA+       + +H+ I K G+     + + LI  Y KC  ++ A  +   + +RD 
Sbjct: 374 LSACAQVGALELGRWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDV 433

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG----ATRLGK 125
             W++++          + + +F  M   + ++P+   F ++  AC   G    A  L  
Sbjct: 434 FVWSAMIGGLAMHGCGSEAVDMFYKMQEAN-VKPNGVTFTNVFCACSHTGLVDEAESLFY 492

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSA 180
           ++ + + + P   +D   + +VD+  + G    A    +++ +  S S W A+L A
Sbjct: 493 KMESSYGIVP---EDKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGA 545


>gi|449481169|ref|XP_004156102.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 642

 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 224/558 (40%), Positives = 328/558 (58%), Gaps = 11/558 (1%)

Query: 56  YAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115
           +AH LL  + Q   +  + ++  Y  +     ++S+F+ +        D+F F  ++K+ 
Sbjct: 93  HAHMLLRGL-QPTALVGSKMVAFYASSGDIDSSVSVFNGI-------GDYFTFPFVLKSS 144

Query: 116 GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWT 175
             L +  +GK VH   +      D  V +SL+ +Y KCG  N+A  VFD++ +++  SW 
Sbjct: 145 VELLSVWMGKCVHGLILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWN 204

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
           A+L+ Y +SG    A+ IFE+ P RN+  WT ++SG  QS     A   F EM +E   +
Sbjct: 205 ALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGV 264

Query: 236 VDPLV-LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
               V + S++ ACA  + LE G+QIH L   +G  S   +  A+  MYAKC  ++ A++
Sbjct: 265 RPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARN 324

Query: 295 IFGRMRR--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
            F ++ R  K++++W ++I   A +G   + ++ + EM+ AG++P+++TF GL+  CSH 
Sbjct: 325 CFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHS 384

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           GLV  G K F  M   Y I P ++HY C+ DLL R+G L EA  L+  MP       W +
Sbjct: 385 GLVDVGLKYFNHMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGS 444

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
           LL+AC+ HRN EM    A  L  L+PE+  +Y+LLSN+YA A  WQ V K+R ++     
Sbjct: 445 LLAACRKHRNLEMAETAARKLFVLEPENTGNYVLLSNMYAEAGRWQEVDKLRAIVKSQGT 504

Query: 473 KKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQ 532
           KK PG S+IE    +H+F  G+TSHP   EI+  L  L  +MK  GY PDTS VLHD+ +
Sbjct: 505 KKSPGCSWIEINGKAHMFLGGDTSHPQGKEIYMFLEALPEKMKAAGYFPDTSYVLHDISE 564

Query: 533 KEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRD 592
           +EKE  L  HSE+LAVA+G+L +   TVLRV KNLR+CGDCH  M  IS I  RE++VRD
Sbjct: 565 EEKEFNLIAHSEKLAVAFGILNTPAETVLRVTKNLRICGDCHTAMVFISEIYGREVIVRD 624

Query: 593 ATRYHHFKDGKCSCNDFW 610
             R+HHFK G CSC D+W
Sbjct: 625 INRFHHFKGGCCSCGDYW 642



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 92/181 (50%), Gaps = 7/181 (3%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDK- 100
           N L+  Y K   +  A  + E MP R+ VSW ++++ Y+Q+ L Q+ +S+F  M+  D  
Sbjct: 204 NALLAGYTKSGCIDAALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSG 263

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           ++P+     S++ AC  L     G+Q+H          +  V  +L  MYAKCG   +AR
Sbjct: 264 VRPNWVTIMSVLPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDAR 323

Query: 161 AVFDSIKL--KNSVSWTAMLSAYARSGRKKDAMEIFE---QAPVR-NLFLWTALVSGLVQ 214
             FD +    KN ++W  M++AYA  G    A+  F    QA ++ +   +T L+SG   
Sbjct: 324 NCFDKLNRNEKNLIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSH 383

Query: 215 S 215
           S
Sbjct: 384 S 384



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 86/202 (42%), Gaps = 16/202 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM--PQR 67
           L  CA+       + +H    ++GL+    +   L   Y KC  +  A +  +++   ++
Sbjct: 275 LPACAQLSTLERGRQIHELACRMGLNSNASVLIALTAMYAKCGSLVDARNCFDKLNRNEK 334

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG--- 124
           + ++W +++TAY       + +S F  M+    +QPD   F  L+  C   G   +G   
Sbjct: 335 NLIAWNTMITAYASYGHGLQAVSTFREMIQAG-IQPDDITFTGLLSGCSHSGLVDVGLKY 393

Query: 125 -KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYA 182
              +   + ++P  +     + + D+  + G    A  +   + +    S W ++L+A  
Sbjct: 394 FNHMSTTYSINPRVEH---YACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAAC- 449

Query: 183 RSGRKKDAMEIFEQAPVRNLFL 204
              RK   +E+ E A  R LF+
Sbjct: 450 ---RKHRNLEMAETA-ARKLFV 467


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/605 (37%), Positives = 340/605 (56%), Gaps = 34/605 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L  C+        + +   II+ G      +   L+  Y KC  ++ AH + E++ 
Sbjct: 416 FMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS 475

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +++ V+W +++TAY Q       ++ F  +L  + ++P+   F S++  C S  +  LGK
Sbjct: 476 KQNVVAWNAMITAYVQHEQYDNALATFQALLK-EGIKPNSSTFTSILNVCKSSDSLELGK 534

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            VH   + +    D  V ++LV M+  CG         D +  KN               
Sbjct: 535 WVHFLIMKAGLESDLHVSNALVSMFVNCG---------DLMSAKN--------------- 570

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
                  +F   P R+L  W  +++G VQ      AF  F  M+  G+   D +  + ++
Sbjct: 571 -------LFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIK-PDKITFTGLL 622

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            ACA+   L  G+++H L+    ++  + +   ++ MY KC  I  A  +F ++ +K+V 
Sbjct: 623 NACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVY 682

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SWTS+I G AQHG+ +E L L+ +M   GVKP+ +TFVG + AC+H GL+ +G   F+SM
Sbjct: 683 SWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM 742

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
            E + I P ++HY C++DL  R+G L+EA   I  M  EPD   W ALL AC+ H N E+
Sbjct: 743 KE-FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVEL 801

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
             + A   L L P D   +++LSN+YA+A MW+ V+K+RK+M    V K+PG S+IE   
Sbjct: 802 AEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDG 861

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H FY+ + +HP  +EI   L  L  EM++ GYVPDT  VLHD+E  EKE+ LF+HSER
Sbjct: 862 KVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSER 921

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+ YGLLK+ P T + + KNLRVCGDCH   K IS+ITKR+I+ RD+ R+HHFKDG CS
Sbjct: 922 LAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCS 981

Query: 606 CNDFW 610
           C DFW
Sbjct: 982 CGDFW 986



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 230/448 (51%), Gaps = 40/448 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L++C + +     + ++  I K G+     + NTLI+ Y KC     A  + ++M ++D 
Sbjct: 117 LQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDV 176

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW  +L  Y Q  L ++   +   M+  D ++PD   F S++ AC        G++++ 
Sbjct: 177 YSWNLLLGGYVQHGLYEEAFKLHEQMVQ-DSVKPDKRTFVSMLNACADARNVDKGRELYN 235

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + + +  D  V ++L++M+ KCG   +A  VFD++  ++ V+WT+M++  AR GR K 
Sbjct: 236 LILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQ 295

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F++                               M  EGV   D +   S++ AC 
Sbjct: 296 ACNLFQR-------------------------------MEEEGVQ-PDKVAFVSLLRACN 323

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +   LE GK++H  +  +G+++ +++  AI+ MY KC  +  A ++F  ++ ++VVSWT+
Sbjct: 324 HPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTA 383

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-D 368
           +I G AQHG+ +E    +++M+ +G++PN VTF+ ++ ACS    + +G+++   +IE  
Sbjct: 384 MIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAG 443

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YG    ++  T LL + ++ G L +A  + + +  + +   W A+++A   H   +    
Sbjct: 444 YGSDDRVR--TALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDNALA 500

Query: 429 VANHLL--SLKPEDPSSYILLSNVYASA 454
               LL   +KP + S++  + NV  S+
Sbjct: 501 TFQALLKEGIKP-NSSTFTSILNVCKSS 527


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/605 (37%), Positives = 340/605 (56%), Gaps = 34/605 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L  C+        + +   II+ G      +   L+  Y KC  ++ AH + E++ 
Sbjct: 416 FMSILGACSSPSALKRGQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKIS 475

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +++ V+W +++TAY Q       ++ F  +L  + ++P+   F S++  C S  +  LGK
Sbjct: 476 KQNVVAWNAMITAYVQHEQYDNALATFQALLK-EGIKPNSSTFTSILNVCKSSDSLELGK 534

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            VH   + +    D  V ++LV M+  CG         D +  KN               
Sbjct: 535 WVHFLIMKAGLESDLHVSNALVSMFVNCG---------DLMSAKN--------------- 570

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
                  +F   P R+L  W  +++G VQ      AF  F  M+  G+   D +  + ++
Sbjct: 571 -------LFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIK-PDKITFTGLL 622

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            ACA+   L  G+++H L+    ++  + +   ++ MY KC  I  A  +F ++ +K+V 
Sbjct: 623 NACASPEALTEGRRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVY 682

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SWTS+I G AQHG+ +E L L+ +M   GVKP+ +TFVG + AC+H GL+ +G   F+SM
Sbjct: 683 SWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM 742

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
            E + I P ++HY C++DL  R+G L+EA   I  M  EPD   W ALL AC+ H N E+
Sbjct: 743 KE-FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVEL 801

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
             + A   L L P D   +++LSN+YA+A MW+ V+K+RK+M    V K+PG S+IE   
Sbjct: 802 AEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWIEVDG 861

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H FY+ + +HP  +EI   L  L  EM++ GYVPDT  VLHD+E  EKE+ LF+HSER
Sbjct: 862 KVHTFYSDDKTHPQTEEIHAELERLHMEMRQLGYVPDTRYVLHDVEDNEKEQALFYHSER 921

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+ YGLLK+ P T + + KNLRVCGDCH   K IS+ITKR+I+ RD+ R+HHFKDG CS
Sbjct: 922 LAITYGLLKTPPLTPIVISKNLRVCGDCHTATKFISKITKRQIIARDSNRFHHFKDGVCS 981

Query: 606 CNDFW 610
           C DFW
Sbjct: 982 CGDFW 986



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 215/420 (51%), Gaps = 36/420 (8%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  LR C   +     K +HA++ ++G      +   ++  Y KC  ++ A  + + + 
Sbjct: 315 FVSLLRACNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVK 374

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            R+ VSW +++  + Q     +    F+ M+    ++P+   F S++ AC S  A + G+
Sbjct: 375 GRNVVSWTAMIAGFAQHGRIDEAFLFFNKMIE-SGIEPNRVTFMSILGACSSPSALKRGQ 433

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q+    + + +  DD V+++L+ MYAKCG   +A  VF+ I  +N V+W AM++AY    
Sbjct: 434 QIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAY---- 489

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
                                      VQ     +A  +F  + +EG+   +    +SI+
Sbjct: 490 ---------------------------VQHEQYDNALATFQALLKEGIK-PNSSTFTSIL 521

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
             C +   LELGK +H L++  G ES L +SNA+V M+  C D+++AK++F  M ++D+V
Sbjct: 522 NVCKSSDSLELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLV 581

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SW +II G  QHG+ +     +  M  +G+KP+++TF GL+ AC+    + +GR+L  ++
Sbjct: 582 SWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACASPEALTEGRRL-HAL 640

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA-CKHHRNTE 424
           I +      +   T L+ + ++ G +++A  +   +P + +  +W ++++   +H R  E
Sbjct: 641 ITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP-KKNVYSWTSMIAGYAQHGRGKE 699



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/448 (26%), Positives = 230/448 (51%), Gaps = 40/448 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L++C + +     + ++  I K G+     + NTLI+ Y KC     A  + ++M ++D 
Sbjct: 117 LQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDV 176

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW  +L  Y Q  L ++   +   M+  D ++PD   F S++ AC        G++++ 
Sbjct: 177 YSWNLLLGGYVQHGLYEEAFKLHEQMVQ-DSVKPDKRTFVSMLNACADARNVDKGRELYN 235

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + + +  D  V ++L++M+ KCG   +A  VFD++  ++ V+WT+M++  AR GR K 
Sbjct: 236 LILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQ 295

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F++                               M  EGV   D +   S++ AC 
Sbjct: 296 ACNLFQR-------------------------------MEEEGVQ-PDKVAFVSLLRACN 323

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +   LE GK++H  +  +G+++ +++  AI+ MY KC  +  A ++F  ++ ++VVSWT+
Sbjct: 324 HPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTA 383

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-D 368
           +I G AQHG+ +E    +++M+ +G++PN VTF+ ++ ACS    + +G+++   +IE  
Sbjct: 384 MIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAG 443

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YG    ++  T LL + ++ G L +A  + + +  + +   W A+++A   H   +    
Sbjct: 444 YGSDDRVR--TALLSMYAKCGSLKDAHRVFEKIS-KQNVVAWNAMITAYVQHEQYDNALA 500

Query: 429 VANHLL--SLKPEDPSSYILLSNVYASA 454
               LL   +KP + S++  + NV  S+
Sbjct: 501 TFQALLKEGIKP-NSSTFTSILNVCKSS 527



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 137/307 (44%), Gaps = 67/307 (21%)

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
           P     VF  IK  ++    A+L+  +++G+  +AM++ E+    ++ ++    S L+Q 
Sbjct: 62  PKGRCVVFADIK--DTQKANAVLNRLSKAGQFNEAMQVLERVDSSHIQIYRQTYSALLQ- 118

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI 275
                                           C  F  L  G++I+  +   G +  +F+
Sbjct: 119 -------------------------------LCIKFKNLGDGERIYNHIKKSGVQPDIFM 147

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
            N +++MYAKC + I+AK IF  MR KDV SW  ++ G  QHG  EE   L+++MV   V
Sbjct: 148 RNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSV 207

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE---------------------------- 367
           KP++ TFV ++ AC+    V KGR+L+  +++                            
Sbjct: 208 KPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATK 267

Query: 368 --DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE---PDEPTWAALLSACKHHRN 422
             D   T  L  +T ++  L+R G   +A NL + M  E   PD+  + +LL AC H   
Sbjct: 268 VFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEA 327

Query: 423 TEMGTRV 429
            E G +V
Sbjct: 328 LEQGKKV 334


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/603 (38%), Positives = 344/603 (57%), Gaps = 37/603 (6%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L+ C R       + +H+QIIK        + + LID Y K   +  A  +L     +D 
Sbjct: 497  LKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDV 556

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDK-LQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW +++  Y Q N   K ++ F  ML  D+ ++ D     + V AC  L A + G+Q+H
Sbjct: 557  VSWTTMIAGYTQYNFDDKALTTFRQML--DRGIRSDEVGLTNAVSACAGLQALKEGQQIH 614

Query: 129  ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
            A   +S F  D   +++LV +Y++C                               G+ +
Sbjct: 615  AQACVSGFSSDLPFQNALVTLYSRC-------------------------------GKIE 643

Query: 189  DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            ++   FEQ    +   W ALVSG  QS N  +A   F+ M REG+D  +     S V A 
Sbjct: 644  ESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGID-NNNFTFGSAVKAA 702

Query: 249  ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
            +  A ++ GKQ+H ++   GY+S   + NA++ MYAKC  I  A+  F  +  K+ VSW 
Sbjct: 703  SETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWN 762

Query: 309  SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            +II   ++HG   E L  +D+M+ + V+PN VT VG++ ACSH+GLV KG   F+SM  +
Sbjct: 763  AIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSE 822

Query: 369  YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
            YG++P  +HY C++D+L+R+G L  A+  I+ MP +PD   W  LLSAC  H+N E+G  
Sbjct: 823  YGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEF 882

Query: 429  VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
             A+HLL L+PED ++Y+LLSN+YA +  W      R+ M    VKKEPG S+IE     H
Sbjct: 883  AAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIH 942

Query: 489  IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
             FY G+ +HPL DEI E   +L       GYV D  S+L++++ ++K+  +F HSE+LA+
Sbjct: 943  SFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAI 1002

Query: 549  AYGLLKSVPGTV-LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
            ++GLL S+P TV + V+KNLRVC DCH  +K +S+++ REI+VRDA R+HHF+ G CSC 
Sbjct: 1003 SFGLL-SLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCK 1061

Query: 608  DFW 610
            D+W
Sbjct: 1062 DYW 1064



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 216/447 (48%), Gaps = 69/447 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAY-GKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           + LH+QI+KLGL   G L   L D Y  K DL   A  + +EMP+R   +W  ++     
Sbjct: 105 RKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG-AFKVFDEMPERTIFTWNKMIKELAS 163

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC-GSLGATRLGKQVHACFVLSPFCDDD 140
            NL  +   +F  M++ + + P+   F+ +++AC G   A  + +Q+HA  +     D  
Sbjct: 164 RNLIGEVFGLFVRMVS-ENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDST 222

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           VV + L+D+Y++ G  + AR VFD ++LK+  S                           
Sbjct: 223 VVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSS--------------------------- 255

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
               W A++SGL ++  E +A   F +M   G+ +  P   SS++ AC     LE+G+Q+
Sbjct: 256 ----WVAMISGLSKNECEAEAIRLFCDMYVLGI-MPTPYAFSSVLSACKKIESLEIGEQL 310

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HGLV+ LG+ S  ++ NA+V +Y    ++I+A+ IF  M ++D V++ ++I G +Q G  
Sbjct: 311 HGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYG 370

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF----------KSMIE--- 367
           E+ + L+  M   G++P+  T   L+ ACS  G + +G++L            + IE   
Sbjct: 371 EKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGAL 430

Query: 368 --------------DYGITPSLQHYTCLLDLLSRSGHLDEAEN---LIKAMPFE---PDE 407
                         DY +   +++      +L   G LD+  N   + + M  E   P++
Sbjct: 431 LNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 490

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLL 434
            T+ ++L  C    + E+G ++ + ++
Sbjct: 491 YTYPSILKTCIRLGDLELGEQIHSQII 517



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 190/424 (44%), Gaps = 43/424 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C + +     + LH  ++KLG      + N L+  Y     +  A H+   M QRD 
Sbjct: 295 LSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDA 354

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V++ +++   +Q    +K + +F  M  LD L+PD    ASLV AC + G    G+Q+HA
Sbjct: 355 VTYNTLINGLSQCGYGEKAMELFKRM-HLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 413

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 F  ++ ++ +L+++YAKC     A   F   +++N V W  ML AY      ++
Sbjct: 414 YTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRN 473

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           +  IF Q  +  +                                + +     SI+  C 
Sbjct: 474 SFRIFRQMQIEEI--------------------------------VPNQYTYPSILKTCI 501

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LELG+QIH  +I   ++   ++ + ++DMYAK   +  A DI  R   KDVVSWT+
Sbjct: 502 RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTT 561

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G  Q+   ++ L  + +M+  G++ +EV     + AC+ +  + +G+++        
Sbjct: 562 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS- 620

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP----DEPTWAALLSACKHHRNTEM 425
           G +  L     L+ L SR G ++E+      + FE     D   W AL+S  +   N E 
Sbjct: 621 GFSSDLPFQNALVTLYSRCGKIEES-----YLAFEQTEAGDNIAWNALVSGFQQSGNNEE 675

Query: 426 GTRV 429
             RV
Sbjct: 676 ALRV 679



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 191/410 (46%), Gaps = 40/410 (9%)

Query: 10  LRVCARHQIAL-TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L  C    +A   V+ +HA+I+  GL     + N LID Y +   V  A  + + +  +D
Sbjct: 193 LEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKD 252

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
           H SW ++++  ++     + I +F  M  L  + P  + F+S++ AC  + +  +G+Q+H
Sbjct: 253 HSSWVAMISGLSKNECEAEAIRLFCDMYVLG-IMPTPYAFSSVLSACKKIESLEIGEQLH 311

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              +   F  D  V ++LV +Y   G   +A  +F ++  +++V++  +++  ++ G  +
Sbjct: 312 GLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGE 371

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            AME+F++                               M  +G++  D   L+S+V AC
Sbjct: 372 KAMELFKR-------------------------------MHLDGLE-PDSNTLASLVVAC 399

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           +    L  G+Q+H     LG+ S   I  A++++YAKC+DI  A D F     ++VV W 
Sbjct: 400 SADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWN 459

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            ++V          +  ++ +M    + PN+ T+  ++  C  +G +  G ++   +I+ 
Sbjct: 460 VMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK- 518

Query: 369 YGITPSLQHYTC--LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
                 L  Y C  L+D+ ++ G LD A +++       D  +W  +++ 
Sbjct: 519 --TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA-GKDVVSWTTMIAG 565



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 1/163 (0%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L+ G+++H  ++ LG +S   +S  + D Y    D+  A  +F  M  + + +W  +I  
Sbjct: 101 LDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKE 160

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
            A      E   L+  MVS  V PNE TF G++ AC    +     +   + I   G+  
Sbjct: 161 LASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRD 220

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           S      L+DL SR+G +D A  +   +  + D  +W A++S 
Sbjct: 221 STVVCNPLIDLYSRNGFVDLARRVFDGLRLK-DHSSWVAMISG 262


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/603 (38%), Positives = 344/603 (57%), Gaps = 37/603 (6%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L+ C R       + +H+QIIK        + + LID Y K   +  A  +L     +D 
Sbjct: 457  LKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDV 516

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDK-LQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW +++  Y Q N   K ++ F  ML  D+ ++ D     + V AC  L A + G+Q+H
Sbjct: 517  VSWTTMIAGYTQYNFDDKALTTFRQML--DRGIRSDEVGLTNAVSACAGLQALKEGQQIH 574

Query: 129  ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
            A   +S F  D   +++LV +Y++C                               G+ +
Sbjct: 575  AQACVSGFSSDLPFQNALVTLYSRC-------------------------------GKIE 603

Query: 189  DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            ++   FEQ    +   W ALVSG  QS N  +A   F+ M REG+D  +     S V A 
Sbjct: 604  ESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGID-NNNFTFGSAVKAA 662

Query: 249  ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
            +  A ++ GKQ+H ++   GY+S   + NA++ MYAKC  I  A+  F  +  K+ VSW 
Sbjct: 663  SETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWN 722

Query: 309  SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            +II   ++HG   E L  +D+M+ + V+PN VT VG++ ACSH+GLV KG   F+SM  +
Sbjct: 723  AIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSE 782

Query: 369  YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
            YG++P  +HY C++D+L+R+G L  A+  I+ MP +PD   W  LLSAC  H+N E+G  
Sbjct: 783  YGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEF 842

Query: 429  VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
             A+HLL L+PED ++Y+LLSN+YA +  W      R+ M    VKKEPG S+IE     H
Sbjct: 843  AAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIH 902

Query: 489  IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
             FY G+ +HPL DEI E   +L       GYV D  S+L++++ ++K+  +F HSE+LA+
Sbjct: 903  SFYVGDQNHPLADEIHEYFQDLTKRASEIGYVQDCFSLLNELQHEQKDPIIFIHSEKLAI 962

Query: 549  AYGLLKSVPGTV-LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
            ++GLL S+P TV + V+KNLRVC DCH  +K +S+++ REI+VRDA R+HHF+ G CSC 
Sbjct: 963  SFGLL-SLPATVPINVMKNLRVCNDCHAWIKFVSKVSNREIIVRDAYRFHHFEGGACSCK 1021

Query: 608  DFW 610
            D+W
Sbjct: 1022 DYW 1024



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 216/447 (48%), Gaps = 69/447 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAY-GKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           + LH+QI+KLGL   G L   L D Y  K DL   A  + +EMP+R   +W  ++     
Sbjct: 65  RKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYG-AFKVFDEMPERTIFTWNKMIKELAS 123

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC-GSLGATRLGKQVHACFVLSPFCDDD 140
            NL  +   +F  M++ + + P+   F+ +++AC G   A  + +Q+HA  +     D  
Sbjct: 124 RNLIGEVFGLFVRMVS-ENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDST 182

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           VV + L+D+Y++ G  + AR VFD ++LK+  S                           
Sbjct: 183 VVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSS--------------------------- 215

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
               W A++SGL ++  E +A   F +M   G+ +  P   SS++ AC     LE+G+Q+
Sbjct: 216 ----WVAMISGLSKNECEAEAIRLFCDMYVLGI-MPTPYAFSSVLSACKKIESLEIGEQL 270

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HGLV+ LG+ S  ++ NA+V +Y    ++I+A+ IF  M ++D V++ ++I G +Q G  
Sbjct: 271 HGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYG 330

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF----------KSMIE--- 367
           E+ + L+  M   G++P+  T   L+ ACS  G + +G++L            + IE   
Sbjct: 331 EKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGAL 390

Query: 368 --------------DYGITPSLQHYTCLLDLLSRSGHLDEAEN---LIKAMPFE---PDE 407
                         DY +   +++      +L   G LD+  N   + + M  E   P++
Sbjct: 391 LNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQ 450

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLL 434
            T+ ++L  C    + E+G ++ + ++
Sbjct: 451 YTYPSILKTCIRLGDLELGEQIHSQII 477



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 190/424 (44%), Gaps = 43/424 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C + +     + LH  ++KLG      + N L+  Y     +  A H+   M QRD 
Sbjct: 255 LSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDA 314

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V++ +++   +Q    +K + +F  M  LD L+PD    ASLV AC + G    G+Q+HA
Sbjct: 315 VTYNTLINGLSQCGYGEKAMELFKRM-HLDGLEPDSNTLASLVVACSADGTLFRGQQLHA 373

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 F  ++ ++ +L+++YAKC     A   F   +++N V W  ML AY      ++
Sbjct: 374 YTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRN 433

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           +  IF Q  +  +                                + +     SI+  C 
Sbjct: 434 SFRIFRQMQIEEI--------------------------------VPNQYTYPSILKTCI 461

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LELG+QIH  +I   ++   ++ + ++DMYAK   +  A DI  R   KDVVSWT+
Sbjct: 462 RLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTT 521

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G  Q+   ++ L  + +M+  G++ +EV     + AC+ +  + +G+++        
Sbjct: 522 MIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS- 580

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP----DEPTWAALLSACKHHRNTEM 425
           G +  L     L+ L SR G ++E+      + FE     D   W AL+S  +   N E 
Sbjct: 581 GFSSDLPFQNALVTLYSRCGKIEES-----YLAFEQTEAGDNIAWNALVSGFQQSGNNEE 635

Query: 426 GTRV 429
             RV
Sbjct: 636 ALRV 639



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 191/410 (46%), Gaps = 40/410 (9%)

Query: 10  LRVCARHQIAL-TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L  C    +A   V+ +HA+I+  GL     + N LID Y +   V  A  + + +  +D
Sbjct: 153 LEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKD 212

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
           H SW ++++  ++     + I +F  M  L  + P  + F+S++ AC  + +  +G+Q+H
Sbjct: 213 HSSWVAMISGLSKNECEAEAIRLFCDMYVLG-IMPTPYAFSSVLSACKKIESLEIGEQLH 271

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              +   F  D  V ++LV +Y   G   +A  +F ++  +++V++  +++  ++ G  +
Sbjct: 272 GLVLKLGFSSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGE 331

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            AME+F++                               M  +G++  D   L+S+V AC
Sbjct: 332 KAMELFKR-------------------------------MHLDGLE-PDSNTLASLVVAC 359

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           +    L  G+Q+H     LG+ S   I  A++++YAKC+DI  A D F     ++VV W 
Sbjct: 360 SADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWN 419

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            ++V          +  ++ +M    + PN+ T+  ++  C  +G +  G ++   +I+ 
Sbjct: 420 VMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIK- 478

Query: 369 YGITPSLQHYTC--LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
                 L  Y C  L+D+ ++ G LD A +++       D  +W  +++ 
Sbjct: 479 --TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFA-GKDVVSWTTMIAG 525



 Score = 72.4 bits (176), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 1/163 (0%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L+ G+++H  ++ LG +S   +S  + D Y    D+  A  +F  M  + + +W  +I  
Sbjct: 61  LDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKE 120

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
            A      E   L+  MVS  V PNE TF G++ AC    +     +   + I   G+  
Sbjct: 121 LASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRD 180

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           S      L+DL SR+G +D A  +   +  + D  +W A++S 
Sbjct: 181 STVVCNPLIDLYSRNGFVDLARRVFDGLRLK-DHSSWVAMISG 222


>gi|225450539|ref|XP_002277347.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 808

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/569 (38%), Positives = 344/569 (60%), Gaps = 2/569 (0%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N++I   GK   V  A  L  EM ++D VSW+++++ Y Q  + ++ + +F  M A + +
Sbjct: 242 NSMIVLLGKMGQVMEAWKLFNEMDEKDMVSWSALISGYEQNGMYEEALVMFIEMNA-NGM 300

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           + D  V  S++ AC  L   + GK +H   +         ++++L+ MY+  G   +A+ 
Sbjct: 301 RLDEVVVVSVLSACAHLSIVKTGKMIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQK 360

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F+     + +SW +M+S   + G  + A  +F+  P +++  W+A++SG  Q     + 
Sbjct: 361 LFNGSHNLDQISWNSMISGCMKCGSVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSET 420

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F EM+  G    D  +L S++ AC + A L+ GK +H  +   G +  + +   ++D
Sbjct: 421 LALFHEMQL-GQIRPDETILVSVISACTHLAALDQGKWVHAYIRKNGLKVNVILGTTLLD 479

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  +  A ++F  M  K V SW ++I+G A +G  E +L ++ EM + GV PNE+T
Sbjct: 480 MYMKCGCVENALEVFNGMEEKGVSSWNALIIGLAVNGLVERSLDMFSEMKNNGVIPNEIT 539

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+G++ AC H+GLV +GR  F SMIE +GI P+++HY C++DLL R+G L+EAE LI++M
Sbjct: 540 FMGVLGACRHMGLVDEGRCHFASMIEKHGIEPNVKHYGCMVDLLGRAGLLNEAEKLIESM 599

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P  PD  TW ALL ACK H +TEMG RV   L+ L+P+    ++LLSN++AS   W+ V 
Sbjct: 600 PMAPDVATWGALLGACKKHGDTEMGERVGRKLIELQPDHDGFHVLLSNIFASKGDWEDVL 659

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           +VR +M    V K PG S IE     H F AG+ +HP  +++  +L E+   +K  GY P
Sbjct: 660 EVRGMMKQQGVVKTPGCSLIEANGVVHEFLAGDKTHPWINKVEGMLNEMAKRLKMEGYAP 719

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           DT+ V  D++++EKE  LF HSE+LA+A+GLL   P T +R++KNLR+C DCH   K+IS
Sbjct: 720 DTNEVSLDIDEEEKETTLFRHSEKLAIAFGLLTISPPTPIRIMKNLRICNDCHTAAKLIS 779

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +   REIVVRD  R+H+FK+G CSC D+W
Sbjct: 780 KAYAREIVVRDRHRFHYFKEGACSCMDYW 808



 Score =  192 bits (487), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 123/427 (28%), Positives = 213/427 (49%), Gaps = 74/427 (17%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           + Y+  + + +   +   W +++ AY Q+N  +K + ++  M+  + + PD++ +  +V+
Sbjct: 91  LDYSLQIFDRIENSNGFMWNTMMRAYIQSNSAEKALLLYKLMVK-NNVGPDNYTYPLVVQ 149

Query: 114 ACGSLGATRL----GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           AC    A RL    GK++H   +   F  D  V+++L++MYA CG   +AR +FD   + 
Sbjct: 150 AC----AVRLLEFGGKEIHDHVLKVGFDSDVYVQNTLINMYAVCGNMRDARKLFDESPVL 205

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL------------------------- 204
           +SVSW ++L+ Y + G  ++A  IF+Q P RN+                           
Sbjct: 206 DSVSWNSILAGYVKKGDVEEAKLIFDQMPQRNIVASNSMIVLLGKMGQVMEAWKLFNEMD 265

Query: 205 ------WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
                 W+AL+SG  Q+    +A   FIEM   G+ + D +V+ S++ ACA+ ++++ GK
Sbjct: 266 EKDMVSWSALISGYEQNGMYEEALVMFIEMNANGMRL-DEVVVVSVLSACAHLSIVKTGK 324

Query: 259 QIHGLVIALGYESCLFISNAIVDMYA-------------------------------KCS 287
            IHGLVI +G ES + + NA++ MY+                               KC 
Sbjct: 325 MIHGLVIRMGIESYVNLQNALIHMYSGSGEIMDAQKLFNGSHNLDQISWNSMISGCMKCG 384

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            +  A+ +F  M  KD+VSW+++I G AQH    ETLAL+ EM    ++P+E   V +I 
Sbjct: 385 SVEKARALFDVMPEKDIVSWSAVISGYAQHDCFSETLALFHEMQLGQIRPDETILVSVIS 444

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           AC+H+  + +G K   + I   G+  ++   T LLD+  + G ++ A  +   M  E   
Sbjct: 445 ACTHLAALDQG-KWVHAYIRKNGLKVNVILGTTLLDMYMKCGCVENALEVFNGME-EKGV 502

Query: 408 PTWAALL 414
            +W AL+
Sbjct: 503 SSWNALI 509


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  442 bits (1138), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 213/588 (36%), Positives = 347/588 (59%), Gaps = 2/588 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K L    +K G      +    I  +  C LV  A  + +     + V+W  +L+ YN+ 
Sbjct: 127 KVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRV 186

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +K+  +F  M     + P+      ++ AC  L     GK ++          + ++
Sbjct: 187 KQFKKSKMLFIEM-EKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLIL 245

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           ++ L+DM+A CG  + A++VFD++K ++ +SWT++++ +A  G+   A + F+Q P R+ 
Sbjct: 246 ENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDY 305

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WTA++ G ++    I+A   F EM+   V   D   + SI+ ACA+   LELG+ +  
Sbjct: 306 VSWTAMIDGYLRMNRFIEALALFREMQMSNVK-PDEFTMVSILTACAHLGALELGEWVKT 364

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +     ++  F+ NA++DMY KC ++  AK +F  M  KD  +WT++IVG A +G  EE
Sbjct: 365 YIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKDKFTWTAMIVGLAINGHGEE 424

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            LA++  M+ A + P+E+T++G++ AC+H G+V KG+  F SM   +GI P++ HY C++
Sbjct: 425 ALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSFFISMTMQHGIKPNVTHYGCMV 484

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G L+EA  +I  MP +P+   W +LL AC+ H+N ++    A  +L L+PE+ +
Sbjct: 485 DLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHKNVQLAEMAAKQILELEPENGA 544

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            Y+LL N+YA+   W+++ +VRKLM    +KK PG S +E     + F AG+ SHP   E
Sbjct: 545 VYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKE 604

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L  +  ++ + GY PDTS V  D+ +++KE  L+ HSE+LA+AY L+ S PG  +R
Sbjct: 605 IYAKLENMMQDLIKAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGITIR 664

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +VKNLR+C DCH + K++S    RE++VRD TR+HHF+ G CSCN+FW
Sbjct: 665 IVKNLRMCVDCHHMAKLVSEAYNRELIVRDKTRFHHFRHGSCSCNNFW 712



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 130/481 (27%), Positives = 204/481 (42%), Gaps = 119/481 (24%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAY------GKCDLVQYAHHLLEEMPQRDHVSWASI 75
           +K +H+  IK+GL    PL    + A+      GK   + YA  + + +PQ     W ++
Sbjct: 23  LKQIHSHTIKMGLSS-DPLFQKRVIAFCCAHESGK---MIYARQVFDAIPQPTLFIWNTM 78

Query: 76  LTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP 135
           +  Y++ N PQ  +S++  MLA   ++PD F F  L+K      A + GK +    V   
Sbjct: 79  IKGYSRINHPQNGVSMYLLMLA-SNIKPDRFTFPFLLKGFTRNMALQYGKVLLNHAVKHG 137

Query: 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
           F  +  V+ + + M++ C L + AR VFD       V+W  MLS Y R  + K +  +  
Sbjct: 138 FDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKML-- 195

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
                                        FIEM + GV   + + L  ++ AC+    LE
Sbjct: 196 -----------------------------FIEMEKRGVS-PNSVTLVLMLSACSKLKDLE 225

Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
            GK I+  +     E  L + N ++DM+A C ++  A+ +F  M+ +DV+SWTSI+ G A
Sbjct: 226 GGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTGFA 285

Query: 316 QHGQAE-------------------------------ETLALYDEMVSAGVKPNEVTFVG 344
             GQ +                               E LAL+ EM  + VKP+E T V 
Sbjct: 286 NIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTMVS 345

Query: 345 LIYACSHVGL-----------------------------------VGKGRKLFKSMIEDY 369
           ++ AC+H+G                                    VGK +K+FK M    
Sbjct: 346 ILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHHKD 405

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEA----ENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
             T     +T ++  L+ +GH +EA     N+I+A    PDE T+  +L AC H    E 
Sbjct: 406 KFT-----WTAMIVGLAINGHGEEALAMFSNMIEA-SITPDEITYIGVLCACTHAGMVEK 459

Query: 426 G 426
           G
Sbjct: 460 G 460


>gi|224061246|ref|XP_002300388.1| predicted protein [Populus trichocarpa]
 gi|222847646|gb|EEE85193.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/508 (40%), Positives = 319/508 (62%), Gaps = 1/508 (0%)

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162
           PD F  + ++KAC  L     GK +H  F    F  +  +++ ++++Y  CG   +A  +
Sbjct: 8   PDTFTCSFVLKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLL 67

Query: 163 FDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
           F+ +  +++V+W  +++  A+ G    A   F + P +N+  WT+++SG VQ     +A 
Sbjct: 68  FEKMPQRDAVTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAI 127

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
             F+++  E V   + + + S++ ACA+   L+LG+ +H      G++  + + N ++DM
Sbjct: 128 DLFMKLEDEAVR-PNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDM 186

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           Y KC  +  A+ +F  M  + VVSW+++I G A HGQAEE L L+ EM+  GVKPN VTF
Sbjct: 187 YVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSEMIKLGVKPNGVTF 246

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
           +GL++ACSH+GL+ +GR+ F SM  DYG+ P ++HY C++DL SR+G L+EA   I +MP
Sbjct: 247 IGLLHACSHMGLIDEGRRFFASMTADYGVIPQIEHYGCVVDLFSRAGLLEEAHEFILSMP 306

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462
            +P+   W ALL  CK H+N ++      HL  L P +   Y+++SN+YA A  W+  ++
Sbjct: 307 IKPNGVVWGALLGGCKVHKNIDLAEEAIKHLSELDPLNDGYYVVISNIYAEAERWEDAAR 366

Query: 463 VRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPD 522
           VRKLM    VKK  G+S I      H F AG+ +HP  ++I ++  +L  +MKRRGY P 
Sbjct: 367 VRKLMKDRGVKKTSGWSSITVNGVVHEFVAGDQTHPQAEDICKIWDKLLVKMKRRGYAPK 426

Query: 523 TSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISR 582
           TS VL DME+KEKE+ L+ HSE+LAV +GL+ +  GT +R++KNLRVC DCH  +K+IS 
Sbjct: 427 TSVVLLDMEEKEKEKFLYRHSEKLAVVFGLMTTPEGTPIRIMKNLRVCEDCHAALKIISG 486

Query: 583 ITKREIVVRDATRYHHFKDGKCSCNDFW 610
           I  REI+VRD  R+H F+DG+CSC DFW
Sbjct: 487 IVSREIIVRDRNRFHCFRDGQCSCRDFW 514



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 102/218 (46%), Gaps = 32/218 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C +    +  KT+H    KLG      L N +++ YG C  +  A  L E+MPQRD 
Sbjct: 17  LKACLKLSDVVNGKTIHGLFQKLGFGSNLFLQNMILNLYGLCGEMGDAMLLFEKMPQRDA 76

Query: 70  V-------------------------------SWASILTAYNQANLPQKTISIFSTMLAL 98
           V                               SW S+++ + Q   P + I +F   L  
Sbjct: 77  VTWNIVIAQLAKRGDIDGAYGFFLRMPNKNVRSWTSMISGFVQCGKPNEAIDLFMK-LED 135

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           + ++P+     S++ AC  LG   LG+ VH     S F  +  V ++L+DMY KCG   N
Sbjct: 136 EAVRPNEVTVVSVLAACADLGDLDLGRIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLEN 195

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           AR VF  ++ +  VSW+AM++  A  G+ ++A+ +F +
Sbjct: 196 ARRVFYEMEERTVVSWSAMIAGLAMHGQAEEALCLFSE 233



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 78/164 (47%), Gaps = 11/164 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H    K G  +   + NTLID Y KC  ++ A  +  EM +R  VSW++++      
Sbjct: 162 RIVHEYSTKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEMEERTVVSWSAMIAGLAMH 221

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ + +FS M+ L  ++P+   F  L+ AC  +G    G++    F  S   D  V+
Sbjct: 222 GQAEEALCLFSEMIKLG-VKPNGVTFIGLLHACSHMGLIDEGRR----FFASMTADYGVI 276

Query: 143 K-----SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
                   +VD++++ GL   A     S+ +K N V W A+L  
Sbjct: 277 PQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGG 320


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 226/606 (37%), Positives = 347/606 (57%), Gaps = 39/606 (6%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   ++ C         + +H  +   G      L NTLI+ Y K  L+  A +L +EMP
Sbjct: 19  YSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMP 78

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            R+ VSW ++++AY+ +NL  K +     ML  + ++P+ + ++S+++AC  L   R   
Sbjct: 79  DRNVVSWTTMISAYSNSNLNHKALDFLILMLR-EGVRPNMYTYSSVLRACDGLLNLR--- 134

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q+H   +      D  V+S+L+D Y+K                                G
Sbjct: 135 QLHGSILKVGLESDVFVRSALIDTYSKL-------------------------------G 163

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
            + DA+ +F +    +L +W +++ G  Q+ +  +  + +  M+R    + D   L+S++
Sbjct: 164 EQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADF-VADQSTLTSVL 222

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKDV 304
            AC   A+LELG+Q+H  V  L Y+  L ++NA++DMY KC  +  A  +F RM   KDV
Sbjct: 223 RACTGLALLELGRQVH--VHVLKYDQDLILNNALLDMYCKCGSLEDANLLFTRMMTEKDV 280

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           +SW+++I G AQ+G + + L L++ M S G KPN +T +G+++ACSH GLV  G   F+S
Sbjct: 281 ISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLFACSHAGLVNDGWYYFQS 340

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           M E +GI P  +HY C++DLL R+G LDEA  LI  M  EPD  TW  LL AC+ H+N +
Sbjct: 341 MKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVD 400

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +    A  +L L P D  +YILLSN+YA++  W+ V++VR+ M    VKK+PG S+IE  
Sbjct: 401 LAIYAAKEILKLDPADAGTYILLSNIYANSQKWEDVAEVRRKMRTRGVKKDPGCSWIEVS 460

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
           K  H F  G+ SHP  +EI   L++L   + R GYVPDT+ VL D+E ++ E  L +HSE
Sbjct: 461 KQVHAFILGDNSHPRIEEIKRELSQLIQRLMRLGYVPDTNFVLQDLEGEQMEDSLQYHSE 520

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           +LA+ +GL+       + + KNLR+CGDCHI  K++S++  R IV+RD  RYHHF+ G C
Sbjct: 521 KLAIVFGLMSLPNQKTIHIRKNLRICGDCHIFAKLVSQLENRVIVIRDPIRYHHFRGGVC 580

Query: 605 SCNDFW 610
           SC D+W
Sbjct: 581 SCGDYW 586



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 163/356 (45%), Gaps = 39/356 (10%)

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           ++L  D   ++ L+K C   GA +  + VH     + +     + ++L++MY K GL + 
Sbjct: 10  NRLSADAITYSELIKCCLVRGAVQQARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDE 69

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           AR                                +F++ P RN+  WT ++S    S   
Sbjct: 70  AR-------------------------------NLFDEMPDRNVVSWTTMISAYSNSNLN 98

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
             A    I M REGV   +    SS++ AC     L   +Q+HG ++ +G ES +F+ +A
Sbjct: 99  HKALDFLILMLREGVR-PNMYTYSSVLRACDGLLNL---RQLHGSILKVGLESDVFVRSA 154

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++D Y+K  +   A ++F  M   D+V W SII G AQ+   +ETL LY  M  A    +
Sbjct: 155 LIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRADFVAD 214

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           + T   ++ AC+ + L+  GR++   +++       L     LLD+  + G L++A  L 
Sbjct: 215 QSTLTSVLRACTGLALLELGRQVHVHVLK---YDQDLILNNALLDMYCKCGSLEDANLLF 271

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454
             M  E D  +W+ +++    +  +    ++   + S  P+ P+   +L  ++A +
Sbjct: 272 TRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPK-PNYITILGVLFACS 326


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 233/610 (38%), Positives = 364/610 (59%), Gaps = 44/610 (7%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLP----NTLIDAYGKCDLVQYAHHLL 61
           Y + L+ C +       K LH +I+K G    G L     N L++ Y K D +  A  L 
Sbjct: 41  YANALQDCIQKDEPSRGKGLHCEILKRG----GCLDLFAWNILLNMYVKSDFLCDASKLF 96

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
           +EMP+R+ +S+ +++  Y ++    + I +F  +    ++ P+ F FAS+++AC ++   
Sbjct: 97  DEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHR--EVLPNQFTFASVLQACATMEGL 154

Query: 122 RLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
            LG Q+H C V+      DV V ++L+D+YAKC                           
Sbjct: 155 NLGNQIH-CHVIKIGLHSDVFVSNALMDVYAKC--------------------------- 186

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
               GR +++ME+F ++P RN   W  ++ G VQ  +   A   F+ M    V   + + 
Sbjct: 187 ----GRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATE-VT 241

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
            SS + ACA+ A LE G QIH L +   ++  + ++NA++DMYAKC  I  A+ +F  M 
Sbjct: 242 YSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMN 301

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
           ++D VSW ++I G + HG   E L ++D+M    VKP+++TFVG++ AC++ GL+ +G+ 
Sbjct: 302 KQDEVSWNAMISGYSMHGLGREALRIFDKMQETEVKPDKLTFVGVLSACANAGLLDQGQA 361

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            F SMI+D+GI P ++HYTC++ LL R GHLD+A  LI  +PF+P    W ALL AC  H
Sbjct: 362 YFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIH 421

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
            + E+G   A  +L ++P+D ++++LLSN+YA+A  W +V+ VRK M    VKKEPG S+
Sbjct: 422 NDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSW 481

Query: 481 IEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLF 540
           IE     H F  G+TSHP    I  +L  L  + K+ GY+P+ + VL D+E +EKER L+
Sbjct: 482 IESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDEEKERLLW 541

Query: 541 WHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFK 600
            HSERLA+++G++++  G+ +R++KNLR+C DCH  +K IS++ +REIVVRD  R+HHF+
Sbjct: 542 VHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDINRFHHFQ 601

Query: 601 DGKCSCNDFW 610
           +G CSC D+W
Sbjct: 602 EGLCSCGDYW 611


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/605 (38%), Positives = 342/605 (56%), Gaps = 34/605 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L  C+R       + +H +IIK G      +   L+  Y KC  +  A ++ E + 
Sbjct: 410 FMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNVFERIS 469

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +++ V+W +++TAY Q       ++ F  +L  + ++PD   F S++  C S  A  LGK
Sbjct: 470 KQNVVAWNAMITAYVQHEKYDNAVATFQALLK-EGIKPDSSTFTSILNVCKSPDALELGK 528

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            V +  + + F  D  ++++LV M+  CG                      ++SA     
Sbjct: 529 WVQSLIIRAGFESDLHIRNALVSMFVNCG---------------------DLMSA----- 562

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
                M +F   P R+L  W  +++G VQ      AF  F  M+  GV   D +  + ++
Sbjct: 563 -----MNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVK-PDQITFTGLL 616

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            ACA+   L  G+++H L+     +  + +   ++ MY KC  I  A  +F  + +K+V 
Sbjct: 617 NACASPEALTEGRRLHALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVY 676

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SWTS+I G AQHG+ +E L L+ +M   GVKP+ +TFVG + AC+H GL+ +G   F+SM
Sbjct: 677 SWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESM 736

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
            +D+ I P ++HY C++DL  R+G L EA   I  M  +PD   W ALL AC+ H + E+
Sbjct: 737 -KDFNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVEL 795

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
             +VA   L L P D   Y++LSN+YA+A MW+ V+K+RK+M    V K+PG S+IE   
Sbjct: 796 AEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWIEVDG 855

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             HIF + + +HP  +EI   L  L  EMK+ GYVPDT  VLHD+E  EKE  L  HSER
Sbjct: 856 RVHIFCSDDKTHPQIEEIHAELGRLHMEMKKLGYVPDTRYVLHDVEDSEKEHALCHHSER 915

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+AYGLLK+ P T + + KNLRVCGDCH   K+IS+ITKR+I+ RD+ R+HHFKDG CS
Sbjct: 916 LAIAYGLLKTPPLTPIVISKNLRVCGDCHTATKLISKITKRQIIARDSNRFHHFKDGVCS 975

Query: 606 CNDFW 610
           C DFW
Sbjct: 976 CGDFW 980



 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 119/450 (26%), Positives = 220/450 (48%), Gaps = 38/450 (8%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   L++C +H+     + +H  I    +     + N LI  Y KC     A  + +EMP
Sbjct: 107 YSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMP 166

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            +D  SW  +L  Y Q    ++   +   M+  D ++PD + F  ++ AC        G 
Sbjct: 167 DKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQ-DGVKPDKYTFVYMLNACADAKNVDKGG 225

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++ +  + + +  D  V ++L++M+ KCG  +                            
Sbjct: 226 ELFSLILNAGWDTDLFVGTALINMHIKCGGVD---------------------------- 257

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
              DA+++F   P R+L  WT++++GL + R    A   F  M  EGV   D +   S++
Sbjct: 258 ---DALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQ-PDKVAFVSLL 313

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            AC +   LE GK++H  +  +G ++ +++  A++ MY KC  +  A ++F  ++ ++VV
Sbjct: 314 KACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVV 373

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SWT++I G AQHG+ EE    +++M+ +G++PN VTF+ ++ ACS    + +GR++   +
Sbjct: 374 SWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRI 433

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
           I+   IT   +  T LL + ++ G L +A N+ + +  + +   W A+++A   H   + 
Sbjct: 434 IKAGYITDD-RVRTALLSMYAKCGSLMDARNVFERIS-KQNVVAWNAMITAYVQHEKYDN 491

Query: 426 GTRVANHLL--SLKPEDPSSYILLSNVYAS 453
                  LL   +KP D S++  + NV  S
Sbjct: 492 AVATFQALLKEGIKP-DSSTFTSILNVCKS 520


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 234/602 (38%), Positives = 342/602 (56%), Gaps = 36/602 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+        + +H QI + G      + N L+  Y KC  +  A+ +   +  R  
Sbjct: 180 LKACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTI 239

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW SI++ Y Q   P + + IFS M   + ++PD     S+++A   +     GK +H 
Sbjct: 240 VSWTSIISGYAQNGQPIEALRIFSEMRKTN-VRPDWIALVSVLRAYTDVEDLEHGKSIHG 298

Query: 130 CFV-LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           C + +   C+ D++  SL  +YAKCG    AR  F+ ++  + + W AM+S Y ++G  +
Sbjct: 299 CVIKMGLECEFDLL-ISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAE 357

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A+E+F                 L++S+N          +R       D + ++S + AC
Sbjct: 358 EAIELFR----------------LMKSKN----------IRP------DSITVTSSIAAC 385

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A    LEL + +   +    + + + ++ +++D YAKC  +  A+ +F R+  KDVV W+
Sbjct: 386 AQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWS 445

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           +++VG   HGQ  E++ L+  M  AGV PN+VTFVGL+ AC + GLV +G  LF  M  D
Sbjct: 446 AMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRM-RD 504

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YGI P  QHY C++DLL R+GHLD A N +  MP EP    W ALLSACK HR+  +G  
Sbjct: 505 YGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEY 564

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            A  L SL P +   Y+ LSN+YAS+ +W  V+KVR LM    + K  GYS IE      
Sbjct: 565 AAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEINGKLQ 624

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F AG+ +HP   EIFE + +L+  +K  G+VP T SVLHD+  +E E  L  HSERLA+
Sbjct: 625 AFQAGDKTHPRSKEIFEEVEDLERRLKEAGFVPHTESVLHDLNYEETEETLCNHSERLAI 684

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           AYGL+ + PGT LR+ KNLR C +CH  +K+IS++  REIVVRDA R+HHFKDG CSC D
Sbjct: 685 AYGLISTPPGTTLRITKNLRACDNCHAAIKLISKLVSREIVVRDACRFHHFKDGACSCGD 744

Query: 609 FW 610
           +W
Sbjct: 745 YW 746



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 154/322 (47%), Gaps = 19/322 (5%)

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
           DD + K+ L  +YAK  +       F   KL N  S    +S          A ++F++ 
Sbjct: 83  DDSIHKTHLNQIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSC---------ARKLFDKF 133

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEM-RREGVDIVDP--LVLSSIVGACANFAVL 254
           P  ++FLW A+V     SR+    F   IEM  R  V  V P       ++ AC+    L
Sbjct: 134 PDPDVFLWNAIVR--CYSRHGF--FGHAIEMYARMQVACVSPDGFSFPCVLKACSALPAL 189

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
           E+G+++HG +   G+ES +F+ N +V +YAKC +I+ A  +FGR+  + +VSWTSII G 
Sbjct: 190 EMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGY 249

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
           AQ+GQ  E L ++ EM    V+P+ +  V ++ A + V  +  G+ +   +I+  G+   
Sbjct: 250 AQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIK-MGLECE 308

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
                 L  L ++ GH+  A      +   P    W A++S    +   E    +   L+
Sbjct: 309 FDLLISLTSLYAKCGHVMVARLFFNQVE-NPSLIFWNAMISGYVKNGYAEEAIELF-RLM 366

Query: 435 SLKPEDPSSYILLSNVYASAAM 456
             K   P S  + S++ A A +
Sbjct: 367 KSKNIRPDSITVTSSIAACAQI 388


>gi|356561464|ref|XP_003549001.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Glycine max]
          Length = 673

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 225/627 (35%), Positives = 356/627 (56%), Gaps = 40/627 (6%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           T+K +H+++  L  H+   L   L+ AY        A ++ + +P+R+ + +  ++ +Y 
Sbjct: 50  TLKNVHSKVFNLSFHENPSLGIKLMRAYAARGEPGLARNVFDVIPERNVIFYNVMIRSYM 109

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
             +L    + +F  M++     PDH+ +  ++KAC      R+G Q+H          + 
Sbjct: 110 NNHLYDDALLVFRDMVS-GGFSPDHYTYPCVLKACSCSDNLRIGLQLHGAVFKVGLDLNL 168

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI------F 194
            V + L+ +Y KCG    AR V D ++ K+ VSW +M++ YA++ +  DA++I       
Sbjct: 169 FVGNGLIALYGKCGCLPEARCVLDEMQSKDVVSWNSMVAGYAQNMQFDDALDICREMDGV 228

Query: 195 EQAP----------------------VRNLFL---------WTALVSGLVQSRNEIDAFY 223
            Q P                      V  +F+         W  ++S  +++     +  
Sbjct: 229 RQKPDACTMASLLPAVTNTSSENVLYVEEMFMNLEKKSLVSWNVMISVYMKNSMPGKSVD 288

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            +++M +  V+  D +  +S++ AC + + L LG++IH  V        + + N+++DMY
Sbjct: 289 LYLQMGKCEVE-PDAITCASVLRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMY 347

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           A+C  +  AK +F RM+ +DV SWTS+I      GQ    +AL+ EM ++G  P+ + FV
Sbjct: 348 ARCGCLEDAKRVFDRMKFRDVASWTSLISAYGMTGQGYNAVALFTEMQNSGQSPDSIAFV 407

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            ++ ACSH GL+ +G+  FK M +DY ITP ++H+ CL+DLL RSG +DEA N+IK MP 
Sbjct: 408 AILSACSHSGLLNEGKFYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPM 467

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
           +P+E  W ALLS+C+ + N ++G   A+ LL L PE+   Y+LLSN+YA A  W  V+ +
Sbjct: 468 KPNERVWGALLSSCRVYSNMDIGILAADKLLQLAPEESGYYVLLSNIYAKAGRWTEVTAI 527

Query: 464 RKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDT 523
           R LM    ++K PG S +E     H F AG+T HP   EI+E L+ L  +MK  GYVP T
Sbjct: 528 RSLMKRRRIRKMPGISNVELNNQVHTFLAGDTYHPQSKEIYEELSVLVGKMKELGYVPKT 587

Query: 524 SSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRI 583
            S LHD+E+++KE  L  HSE+LA+ + +L +    + R+ KNLRVCGDCHI  K+IS+I
Sbjct: 588 DSALHDVEEEDKECHLAVHSEKLAIVFAILNTQESPI-RITKNLRVCGDCHIAAKLISKI 646

Query: 584 TKREIVVRDATRYHHFKDGKCSCNDFW 610
            +REIV+RD  R+HHFKDG CSC D+W
Sbjct: 647 VQREIVIRDTNRFHHFKDGICSCGDYW 673



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 13/178 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C      L  + +H  + +  L     L N+LID Y +C  ++ A  + + M  RD 
Sbjct: 309 LRACGDLSALLLGRRIHEYVERKKLCPNMLLENSLIDMYARCGCLEDAKRVFDRMKFRDV 368

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW S+++AY         +++F+ M    +  PD   F +++ AC   G    GK    
Sbjct: 369 ASWTSLISAYGMTGQGYNAVALFTEMQNSGQ-SPDSIAFVAILSACSHSGLLNEGK---- 423

Query: 130 CFVLSPFCDDDVVK------SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
            F      DD  +       + LVD+  + G  + A  +   + +K N   W A+LS+
Sbjct: 424 -FYFKQMTDDYKITPIIEHFACLVDLLGRSGRVDEAYNIIKQMPMKPNERVWGALLSS 480



 Score = 46.6 bits (109), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 54/263 (20%), Positives = 116/263 (44%), Gaps = 35/263 (13%)

Query: 228 MRREGVDIVDPLVLSSIVGACAN-FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           +R+  V   +P+++  ++G   + +  ++  K +H  V  L +     +   ++  YA  
Sbjct: 21  IRKSLVSPQNPVLVLELLGKVLDQYPDIKTLKNVHSKVFNLSFHENPSLGIKLMRAYAAR 80

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
            +   A+++F  +  ++V+ +  +I     +   ++ L ++ +MVS G  P+  T+  ++
Sbjct: 81  GEPGLARNVFDVIPERNVIFYNVMIRSYMNNHLYDDALLVFRDMVSGGFSPDHYTYPCVL 140

Query: 347 YACS-----HVGL--------VGKGRKLF--KSMIEDYGITPSLQHYTCLLDLL------ 385
            ACS      +GL        VG    LF    +I  YG    L    C+LD +      
Sbjct: 141 KACSCSDNLRIGLQLHGAVFKVGLDLNLFVGNGLIALYGKCGCLPEARCVLDEMQSKDVV 200

Query: 386 ---------SRSGHLDEAENLIKAMPF---EPDEPTWAALLSACKHHRNTEMGTRVANHL 433
                    +++   D+A ++ + M     +PD  T A+LL A   + ++E    V    
Sbjct: 201 SWNSMVAGYAQNMQFDDALDICREMDGVRQKPDACTMASLLPAVT-NTSSENVLYVEEMF 259

Query: 434 LSLKPEDPSSYILLSNVYASAAM 456
           ++L+ +   S+ ++ +VY   +M
Sbjct: 260 MNLEKKSLVSWNVMISVYMKNSM 282


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/601 (37%), Positives = 342/601 (56%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA   +    + LH+ ++K+ +     +   LID Y KC L+Q A  + + MP +D 
Sbjct: 296 LKACAAIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDV 355

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           + W SI++ Y+      + +S+F+ M   + L+ +    ++++K+     A    +QVH 
Sbjct: 356 IVWNSIISGYSNCGYDIEAMSLFTNMYK-EGLEFNQTTLSTILKSTAGSQANGFCEQVHT 414

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + S +  D  V +SL+D Y KC L                                +D
Sbjct: 415 ISIKSGYQYDGYVANSLLDSYGKCCL-------------------------------LED 443

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A ++FE  P  +L  +T++++   Q     +A   ++ M+   +   D  + SS+  ACA
Sbjct: 444 AAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIK-PDAFIFSSLFNACA 502

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           N +  E GKQIH  V+  G  S +F  N++V+MYAKC  I  A  IF  +  + +VSW++
Sbjct: 503 NLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSA 562

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G AQHG   + L L+ +M+  G+ PN +T V ++ AC+H GLV + R+ F  M + +
Sbjct: 563 MIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLF 622

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GITP+ +HY C++D+L R G LDEA  L+K MPF+     W ALL A + H+N E+G   
Sbjct: 623 GITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHA 682

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  LL+L+PE   ++ILL+N+YAS  MW +V+KVR+ M    VKKEPG S+IE     + 
Sbjct: 683 AEMLLTLEPEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELKDKVYT 742

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F  G+ SHP   EI+  L +L   +   GYVP   + LHD+EQ EKE+ L+ HSE+LAVA
Sbjct: 743 FIVGDRSHPRSKEIYVKLDDLRERLTSAGYVPMIETDLHDVEQIEKEQLLWHHSEKLAVA 802

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GL+ + PG  +RV KNLRVC DCH   K IS++  REI+VRD  R+HHF+DG CSC D+
Sbjct: 803 FGLIATPPGAPIRVKKNLRVCIDCHTAFKFISKVASREIIVRDINRFHHFRDGSCSCGDY 862

Query: 610 W 610
           W
Sbjct: 863 W 863



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/450 (24%), Positives = 214/450 (47%), Gaps = 43/450 (9%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA---YNQ 81
           +H  +IKLG        N L+D Y K    + A  +  E+P+ D VSW +++     + +
Sbjct: 210 VHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEK 269

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
            +L  K +    +     ++ P  F  +S +KAC ++G  +LG+Q+H+  +      D  
Sbjct: 270 NDLALKLLGKMGSY----RVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMDMEPDSF 325

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V   L+DMY+KCGL  +AR VFD +  K+ + W +++S Y+  G   +AM +F       
Sbjct: 326 VGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTN----- 380

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                                     M +EG++  +   LS+I+ + A        +Q+H
Sbjct: 381 --------------------------MYKEGLEF-NQTTLSTILKSTAGSQANGFCEQVH 413

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
            + I  GY+   +++N+++D Y KC  +  A  +F     +D+V++TS+I   +Q+G  E
Sbjct: 414 TISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGE 473

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L +Y  M    +KP+   F  L  AC+++    +G+++   +++  G+   +     L
Sbjct: 474 EALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLK-CGLLSDVFAGNSL 532

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +++ ++ G +D+A  +   + +     +W+A++     H +     ++   +  LK    
Sbjct: 533 VNMYAKCGSIDDASCIFNEISWR-GIVSWSAMIGGLAQHGHGRKALQLFYQM--LKNGIL 589

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVME 471
            ++I L +V ++      V++ R+   +ME
Sbjct: 590 PNHITLVSVLSACNHAGLVTEARRFFGLME 619



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 112/467 (23%), Positives = 215/467 (46%), Gaps = 66/467 (14%)

Query: 45  IDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPD 104
           ++ Y KC   + A  L+ +  + D VSW+++++ Y Q    ++ +  +  M  L   + +
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGA-KGN 147

Query: 105 HFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS--SLVDMYAKC-GLPNNARA 161
            F F+S++K C       LGKQ+H   +++      +  +  SL  +   C GL +    
Sbjct: 148 EFTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYG 207

Query: 162 V----------FDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSG 211
           +          +DS    +  S  A+L  YA+SG  + A+ +F + P  ++  W A+++G
Sbjct: 208 MKVHGYLIKLGYDS----DPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAG 263

Query: 212 LV-QSRNEIDAFYSFIEMRREGVDIVDP--LVLSSIVGACANFAVLELGKQIHGLVIALG 268
            V   +N++    +   + + G   V P    LSS + ACA   +++LG+Q+H  ++ + 
Sbjct: 264 CVLHEKNDL----ALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMD 319

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
            E   F+   ++DMY+KC  +  A+ +F  M  KDV+ W SII G +  G   E ++L+ 
Sbjct: 320 MEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFT 379

Query: 329 EMVSAGVKPNEVTFVGLIYACS-----------HVGLVGKGRK----LFKSMIEDYG--- 370
            M   G++ N+ T   ++ + +           H   +  G +    +  S+++ YG   
Sbjct: 380 NMYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCC 439

Query: 371 ----------ITPS--LQHYTCLLDLLSRSGHLDEAENLIKAMP---FEPDEPTWAALLS 415
                     + P+  L  YT ++   S+ G  +EA  +   M     +PD   +++L +
Sbjct: 440 LLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFN 499

Query: 416 ACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462
           AC +    E G ++  H+L           LLS+V+A  ++    +K
Sbjct: 500 ACANLSAYEQGKQIHVHVLKCG--------LLSDVFAGNSLVNMYAK 538



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 45/238 (18%)

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           V++Y+KC     A+ +       D+VSW+++I G  Q+G+ EE L  Y EM   G K NE
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 340 VTFVGLIYACSHVGLVGKGRK-----LFKSMIEDYGITPSL---------------QHY- 378
            TF  ++  CS    +  G++     L   MI   GI+P+                ++Y 
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMIST-GISPNEFSLSTVLNACAGLEDENYG 207

Query: 379 -------------------TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
                                LLD+ ++SG  + A  +   +P +PD  +W A+++ C  
Sbjct: 208 MKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIP-KPDIVSWNAVIAGCVL 266

Query: 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS-VMEVKKEP 476
           H   ++  ++   + S +   PS + L S + A AA+   V   R+L S +M++  EP
Sbjct: 267 HEKNDLALKLLGKMGSYRVA-PSMFTLSSALKACAAI-GLVKLGRQLHSALMKMDMEP 322


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/601 (37%), Positives = 342/601 (56%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CAR   +     +H+ ++K G      +  +LI+ Y KC  +  A  + +++P ++ 
Sbjct: 115 LKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNF 174

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW + ++ Y      ++ I +F  +L +  L+PD F    ++ AC   G  R G+ +  
Sbjct: 175 ASWTATISGYVGVGKCREAIDMFRRLLEMG-LRPDSFSLVEVLSACKRTGDLRSGEWIDE 233

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               +    +  V ++LVD Y KCG    AR+VFD +  KN VSW++M+  YA +G  K+
Sbjct: 234 YITENGMVRNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKE 293

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+++                               F +M  EG+   D   +  ++ +CA
Sbjct: 294 ALDL-------------------------------FFKMLNEGLK-PDCYAMVGVLCSCA 321

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LELG     L+    +     +  A++DMYAKC  +  A ++F  MR+KD V W +
Sbjct: 322 RLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNA 381

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
            I G A  G  ++ L L+ +M  +G+KP+  TFVGL+ AC+H GLV +GR+ F SM   +
Sbjct: 382 AISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVF 441

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            +TP ++HY C++DLL R+G LDEA  LIK+MP E +   W ALL  C+ HR+T++   V
Sbjct: 442 TLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVV 501

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
              L++L+P    +Y+LLSN+YA++  W+  +K+R +MS   VKK PGYS+IE     H 
Sbjct: 502 LKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVDGVVHQ 561

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F  G+TSHPL ++I+  L EL  ++K  GYVP T  VL D+E++EKE  +  HSE+LAVA
Sbjct: 562 FLVGDTSHPLSEKIYAKLGELAKDLKAAGYVPTTDHVLFDIEEEEKEHFIGCHSEKLAVA 621

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GL+ + P   + VVKNLRVCGDCH  +K ISRI  REI+VRD  R+H F DG CSC D+
Sbjct: 622 FGLISTAPNDKILVVKNLRVCGDCHEAIKHISRIAGREIIVRDNNRFHCFTDGLCSCKDY 681

Query: 610 W 610
           W
Sbjct: 682 W 682


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  441 bits (1135), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/615 (37%), Positives = 340/615 (55%), Gaps = 47/615 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAY--------------GKCDLVQ 55
           L+ CA   +     +LHA  ++ G        N L++ Y              G   +++
Sbjct: 65  LKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDGSAVVLE 124

Query: 56  YAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115
               + +EMP++D VSW +++    ++    + + +   M   D  +PD F  +S++   
Sbjct: 125 SVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWR-DGCKPDSFTLSSVLPIF 183

Query: 116 GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWT 175
                 R G ++H     + F DD  V SSL+DMYA C                      
Sbjct: 184 AEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCT--------------------- 222

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
                     R   ++++F+  PVR+  LW ++++G  Q+ +  +A   F  M   G+  
Sbjct: 223 ----------RTDYSVKVFDNLPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKP 272

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
           + P+  SS++ AC N A L LGKQ+H  VI  G++  +FIS++++DMY KC ++  A+ I
Sbjct: 273 M-PVTFSSLIPACGNLASLLLGKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRI 331

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
           F R++  D+VSWT++I+G A HG A E L L+D M    +KPN +TF+ ++ ACSH GLV
Sbjct: 332 FDRIQSPDIVSWTAMIMGHALHGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLV 391

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
            KG K F SM + YGI PSL+H+  L D L R G L+EA N I  M  +P    W+ LL 
Sbjct: 392 DKGWKYFNSMSDHYGIVPSLEHHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLR 451

Query: 416 ACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKE 475
           ACK H+NT +   VA  +  L+P    S+I+LSN Y+S+  W   + +RK M    ++KE
Sbjct: 452 ACKVHKNTVLAEEVAKKIFDLEPRSMGSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKE 511

Query: 476 PGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEK 535
           P  S+IE     H+F A + SHP  + I + L     +M R+GYVP+T  V  D+E+++K
Sbjct: 512 PACSWIEVKNKQHVFVAHDKSHPWYERIIDALNVFSEQMVRQGYVPNTDDVFQDIEEEQK 571

Query: 536 ERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATR 595
              L  HSE+LA+ +G++ + PGT +RV+KNLRVC DCH V K IS+I  REIV+RDA R
Sbjct: 572 NSVLCGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHTVTKFISKIVGREIVMRDANR 631

Query: 596 YHHFKDGKCSCNDFW 610
           +HHFKDG CSC DFW
Sbjct: 632 FHHFKDGICSCGDFW 646



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 166/348 (47%), Gaps = 25/348 (7%)

Query: 71  SWA-SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL---VKACGSLGATRLGKQ 126
           SWA  I  A +Q +     I++F  M A D       V  SL   +K+C +LG   LG  
Sbjct: 21  SWAHQIRVAASQGDF-HHAIALFLRMRASDPAAACSSVLTSLPGALKSCAALGLRALGAS 79

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +HA  + S    D    ++L+++Y K   P +     D          +A++    R   
Sbjct: 80  LHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDG---------SAVVLESVR--- 127

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
                ++F++ P +++  W  LV G  +S    +A     EM R+G    D   LSS++ 
Sbjct: 128 -----KVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCK-PDSFTLSSVLP 181

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
             A  A +  G ++HG     G+   +F+ ++++DMYA C+    +  +F  +  +D + 
Sbjct: 182 IFAEGADVRRGMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDNLPVRDAIL 241

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W S++ G AQ+G  +E L L+  M+ +G+KP  VTF  LI AC ++  +  G++L   +I
Sbjct: 242 WNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACGNLASLLLGKQLHAYVI 301

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
              G   ++   + L+D+  + G++  A  +   +   PD  +W A++
Sbjct: 302 RG-GFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQ-SPDIVSWTAMI 347


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/634 (36%), Positives = 353/634 (55%), Gaps = 67/634 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAH----------- 58
           L+ CA+       K +H  ++KLGL     +  +LI+ Y +   + YA            
Sbjct: 139 LKSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDA 198

Query: 59  --------------------HLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                                L EE+P RD VSW +++  Y Q+   ++ ++ F  M   
Sbjct: 199 VSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRA 258

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           + + P+     +++ AC   G+  LG  V +         +  + ++L+DMY+KCG  + 
Sbjct: 259 N-VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDK 317

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           AR +F+ I  K+ +SW  M+  Y+     K+A+ +F +                      
Sbjct: 318 ARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRK---------------------- 355

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA--LGYESCLFIS 276
                    M++  V+  D +   SI+ ACA    L+LGK IH  +    LG  +    +
Sbjct: 356 ---------MQQSNVEPND-VTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWT 405

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
            +++DMYAKC +I AAK +F  M+ K + SW ++I G A HG A   L L+ +M   G +
Sbjct: 406 -SLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFE 464

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
           P+++TFVG++ ACSH GLV  GR+ F SM+EDY I+P LQHY C++DLL R+G  DEAE 
Sbjct: 465 PDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAGLFDEAEA 524

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           L+K M  +PD   W +LL AC+ H N E+G   A HL  L+PE+P +Y+LLSN+YA+A  
Sbjct: 525 LMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPENPGAYVLLSNIYATAGR 584

Query: 457 WQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKR 516
           W  V+++R  ++   +KK PG S IE     H F  G+  H    +I+++L E+D  +++
Sbjct: 585 WDDVARIRTKLNDKGMKKVPGCSSIEVDSVVHEFLVGDKVHEQSQDIYKMLDEIDQLLEK 644

Query: 517 RGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIV 576
            G+VPDTS VL+DM+++ KE  L  HSE+LA+A+GL+ + P T +R+VKNLRVCG+CH  
Sbjct: 645 AGHVPDTSEVLYDMDEEWKEGSLSHHSEKLAIAFGLISTKPETTIRIVKNLRVCGNCHSA 704

Query: 577 MKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +K+IS+I  REI+ RD  R+HHFKDG CSC D+W
Sbjct: 705 IKLISKIFNREIIARDRNRFHHFKDGSCSCMDYW 738


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  441 bits (1134), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 241/609 (39%), Positives = 353/609 (57%), Gaps = 35/609 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYG-PLPNTLIDAYGKCDLVQYAHHLLEEM 64
           YL  L  CA  +     + +HA+++  GL Q    + N++I  YGKC   + A  + E M
Sbjct: 364 YLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAM 423

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           P++D VSW +++ A    +  Q  + +F  M  L+ L+ + F   SL++ACG L   +L 
Sbjct: 424 PRKDDVSWNAVINASVGNSKFQDALELFHGM-ELEGLRSNEFTLLSLLEACGGLEDLKLA 482

Query: 125 KQVHACFVLSPFC-DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           +Q+HA      F  +   V +S+V+MYA+CG   +A+  FDS++ K  V+W+ +L+AYA+
Sbjct: 483 RQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQ 542

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           S          +  P R                    AF  F EM  EG+   +   +S+
Sbjct: 543 S----------KDGPGRR-------------------AFKFFQEMEAEGIKPGEVTFVSA 573

Query: 244 IVGACANFAVLELGKQIHGLVIALGY-ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           +  ACA  A LE G+ +H    A G+ E+ L + N I++MY KC     AK +F +M  K
Sbjct: 574 L-DACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMPEK 632

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
            ++SW S+IV  A +G A E L+   EM+  G  P+  T V ++Y  SH GL+ +G + F
Sbjct: 633 CLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGLSHAGLLERGVEHF 692

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP-FEPDEPTWAALLSACKHHR 421
           +S I+D+G+ PS     CL+DLL+R G LD AE LI A P  + D   W  LL+ACK + 
Sbjct: 693 RSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTIAWMTLLAACKSYG 752

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           + + G R A  +  L+P+   S+++L+N+YAS   W   S++RK+M  M VKKEPG S+I
Sbjct: 753 DPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMMERMSVKKEPGCSWI 812

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E     H F +GE+ HP   EI E L +L   M+  GYVPDT++V+HD+E+ +KE  L  
Sbjct: 813 ELSGSVHEFISGESKHPKIREICEDLEKLTLRMREAGYVPDTTNVVHDVEEGDKEEILSR 872

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSERLA+ +GL+ + PG  +RVVKNLRVC DCH   K+IS +  REIVVRD++R+HHFK 
Sbjct: 873 HSERLAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREIVVRDSSRFHHFKH 932

Query: 602 GKCSCNDFW 610
           G+CSC DFW
Sbjct: 933 GQCSCGDFW 941



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 183/373 (49%), Gaps = 35/373 (9%)

Query: 48  YGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV 107
           YGKC  V  A  + + +  ++  SW  ++ AY+Q    ++ + +F+ M   +  +PD  V
Sbjct: 2   YGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRM-QWEGTRPDKVV 60

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           F   + AC + G    G+Q+H+  V S    + ++ +SLV+MY KC     A  VFD + 
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGML 120

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
           L++ VS                               WTA+++   Q+     A      
Sbjct: 121 LRDVVS-------------------------------WTAMLAVYAQNGCWSQALECLSR 149

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M  EGV   + +   +IV  CA   +L+LG++IH  +I  G E    + NA+V MY  C 
Sbjct: 150 MDAEGVK-PNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNALVHMYGSCG 208

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
                K +F RM +  V+ WT++I G +Q+GQ EE L ++ +M   GVK NEVT++ ++ 
Sbjct: 209 SFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVE 268

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
            C ++  V +G  +   ++E    + +L   T L+ L  + G LD A+ L++ M ++ D 
Sbjct: 269 VCRNLDAVKEGEMIDARILESPFCSSTLL-ATSLISLYGQCGILDRAKGLLEHM-YQRDV 326

Query: 408 PTWAALLSACKHH 420
             W A+++AC  +
Sbjct: 327 VAWNAMVTACAQN 339



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 208/451 (46%), Gaps = 39/451 (8%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  + VC         + + A+I++        L  +LI  YG+C ++  A  LLE M 
Sbjct: 263 YMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMY 322

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           QRD V+W +++TA  Q     + I +   M  ++    +   + S+++AC +L A   G+
Sbjct: 323 QRDVVAWNAMVTACAQNGDNWEAIHLLRRM-DMEGFGANKVTYLSVLEACANLEALSQGR 381

Query: 126 QVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           ++HA  +L      +V V +S++ MY KCG    A +VF+++  K+ VSW A+++A   +
Sbjct: 382 EIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGN 441

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
            + +DA+E+F                                 M  EG+   +   L S+
Sbjct: 442 SKFQDALELFHG-------------------------------MELEGLR-SNEFTLLSL 469

Query: 245 VGACANFAVLELGKQIH-GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           + AC     L+L +QIH          +   + N++V+MYA+C  ++ AK  F  +  K 
Sbjct: 470 LEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKG 529

Query: 304 VVSWTSIIVGTAQH--GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           +V+W+ I+   AQ   G        + EM + G+KP EVTFV  + AC+ +  +  GR +
Sbjct: 530 LVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGEVTFVSALDACAAMATLEHGRSM 589

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
            +       +  SL     ++++  + G   +A+ +   MP E    +W +L+ A  H+ 
Sbjct: 590 HRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQMP-EKCLISWNSLIVAYAHNG 648

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           +          +L L+  DP S   +S +Y 
Sbjct: 649 HALEALSSLQEML-LQGFDPDSGTSVSILYG 678



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 209/448 (46%), Gaps = 38/448 (8%)

Query: 12  VCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVS 71
           VCA+ ++    + +H +II  GL   G L N L+  YG C        +   M Q   + 
Sbjct: 168 VCAKLRLLDLGRKIHHRIINEGLEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLL 227

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
           W +++   +Q    ++ + +F  M  L+ ++ +   + S+V+ C +L A + G+ + A  
Sbjct: 228 WTTMIAGCSQNGQYEEGLLVFRKM-DLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARI 286

Query: 132 VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
           + SPFC   ++ +SL+ +Y +CG+ + A+ + + +  ++ V+W AM++A A++G   +A+
Sbjct: 287 LESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAI 346

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
            +                      R +++ F         G + V  L   S++ ACAN 
Sbjct: 347 HLLR--------------------RMDMEGF---------GANKVTYL---SVLEACANL 374

Query: 252 AVLELGKQIHGLVIALG-YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
             L  G++IH  V+  G  +  + + N+++ MY KC    AA  +F  M RKD VSW ++
Sbjct: 375 EALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAV 434

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370
           I  +  + + ++ L L+  M   G++ NE T + L+ AC  +  +   R++         
Sbjct: 435 INASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHARAAAGGF 494

Query: 371 ITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVA 430
              S      ++++ +R G L +A+    ++  E     W+ +L+A    ++   G R  
Sbjct: 495 GGNSTAVGNSVVNMYARCGSLLDAKKAFDSLE-EKGLVAWSIILAAYAQSKDGP-GRRAF 552

Query: 431 NHLLSLKPE--DPSSYILLSNVYASAAM 456
                ++ E   P     +S + A AAM
Sbjct: 553 KFFQEMEAEGIKPGEVTFVSALDACAAM 580



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 190/394 (48%), Gaps = 34/394 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H+ ++  GL     + N+L++ YGKC  V  A  + + M  RD VSW ++L  Y Q 
Sbjct: 78  RQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQN 137

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + +   S M A + ++P+   F ++V  C  L    LG+++H   +      D ++
Sbjct: 138 GCWSQALECLSRMDA-EGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGIL 196

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LV MY  CG  ++ ++VF  +   + + WT M++  +++G+ ++ + +F +      
Sbjct: 197 GNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRK------ 250

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                    M  EGV   + +   S+V  C N   ++ G+ I  
Sbjct: 251 -------------------------MDLEGVK-ANEVTYMSMVEVCRNLDAVKEGEMIDA 284

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            ++   + S   ++ +++ +Y +C  +  AK +   M ++DVV+W +++   AQ+G   E
Sbjct: 285 RILESPFCSSTLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWE 344

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L   M   G   N+VT++ ++ AC+++  + +GR++   ++    +   +     ++
Sbjct: 345 AIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVI 404

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            +  + G  + A ++ +AMP   D+ +W A+++A
Sbjct: 405 TMYGKCGQTEAAMSVFEAMP-RKDDVSWNAVINA 437



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 138/281 (49%), Gaps = 34/281 (12%)

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           MY KC    +A  VFD I  KN  SWT M++AY+++G  ++A+E+F +            
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTR------------ 48

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
                              M+ EG    D +V    + ACA    L+ G+QIH  V+  G
Sbjct: 49  -------------------MQWEGTR-PDKVVFVIALDACAASGELDHGRQIHSSVVGSG 88

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
             S + ISN++V+MY KC D+  A+ +F  M  +DVVSWT+++   AQ+G   + L    
Sbjct: 89  LTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALECLS 148

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
            M + GVKPN+VTFV ++  C+ + L+  GRK+   +I + G+ P       L+ +    
Sbjct: 149 RMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINE-GLEPDGILGNALVHMYGSC 207

Query: 389 GHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G  D+ +++   M  +     W  +++ C  +   E G  V
Sbjct: 208 GSFDDMKSVFSRMG-QSSVLLWTTMIAGCSQNGQYEEGLLV 247


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 227/589 (38%), Positives = 345/589 (58%), Gaps = 35/589 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +++H  I++LG+       N L++ Y K   +     + E MP++D VS+ +++  Y Q+
Sbjct: 125 ESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQS 184

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV- 141
            + +  + +   M   D L+PD F  +S++           GK++H  +V+    D DV 
Sbjct: 185 GMYEDALRMVREMGTSD-LKPDAFTLSSVLPIFSEYVDVLKGKEIHG-YVIRKGIDSDVY 242

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           + SSLVDMYAK                               S R +D+  +F     R+
Sbjct: 243 IGSSLVDMYAK-------------------------------SARIEDSERVFSHLYRRD 271

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
              W +LV+G VQ+    +A   F +M    V     +  SS++ ACA+ A L LGKQ+H
Sbjct: 272 SISWNSLVAGYVQNGRYNEALRLFRQMVSAKVR-PGAVAFSSVIPACAHLATLHLGKQLH 330

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           G V+  G+   +FI++A+VDMY+KC +I AA+ IF RM   D VSWT+II+G A HG   
Sbjct: 331 GYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGH 390

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E ++L++EM   GVKPN+V FV ++ ACSHVGLV +    F SM + YG+   L+HY  +
Sbjct: 391 EAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAV 450

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
            DLL R+G L+EA + I  M  EP    W+ LLS+C  H+N E+  +VA  + ++  E+ 
Sbjct: 451 ADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENM 510

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            +Y+L+ N+YAS   W+ ++K+R  +    ++K+P  S+IE    +H F +G+ SHP  D
Sbjct: 511 GAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKTHGFVSGDRSHPSMD 570

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            I E L  +  +M++ GYV DTS VLHD++++ K   LF HSERLAVA+G++ + PGT +
Sbjct: 571 RINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKRELLFGHSERLAVAFGIINTEPGTTI 630

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           RV KN+R+C DCH+ +K IS+IT+REI+VRD +R+HHF  G CSC D+W
Sbjct: 631 RVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHHFNRGSCSCGDYW 679



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 197/392 (50%), Gaps = 36/392 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LHAQ I+     +    + +I  Y    L+  A  + + +     ++W S++  +   
Sbjct: 25  KQLHAQFIRTQSLSHTS-ASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQ 83

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           +L  + ++ F  M A  +  PDH VF S++K+C  +   R G+ VH   V      D   
Sbjct: 84  SLFSRALASFVEMRASGRC-PDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYT 142

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L++MY+K    ++ R VF+ +  K+ VS+  +++ YA+SG  +DA+ +  +    +L
Sbjct: 143 GNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDL 202

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                          + DAF                  LSS++   + +  +  GK+IHG
Sbjct: 203 ---------------KPDAF-----------------TLSSVLPIFSEYVDVLKGKEIHG 230

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            VI  G +S ++I +++VDMYAK + I  ++ +F  + R+D +SW S++ G  Q+G+  E
Sbjct: 231 YVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNE 290

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L+ +MVSA V+P  V F  +I AC+H+  +  G++L   ++   G   ++   + L+
Sbjct: 291 ALRLFRQMVSAKVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRG-GFGRNIFIASALV 349

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           D+ S+ G++  A  +   M    DE +W A++
Sbjct: 350 DMYSKCGNIQAARKIFDRMNLH-DEVSWTAII 380



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 141/304 (46%), Gaps = 35/304 (11%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           L  K +H  +I+ G+     + ++L+D Y K   ++ +  +   + +RD +SW S++  Y
Sbjct: 223 LKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGY 282

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            Q     + + +F  M++  K++P    F+S++ AC  L    LGKQ+H   +   F  +
Sbjct: 283 VQNGRYNEALRLFRQMVSA-KVRPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGRN 341

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             + S+LVDMY+KCG    AR +FD + L + VSWTA++  +A  G   +A+ +FE    
Sbjct: 342 IFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFE---- 397

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL-ELGK 258
                                      EM+R+GV   + +   +++ AC++  ++ E   
Sbjct: 398 ---------------------------EMKRQGVK-PNQVAFVAVLTACSHVGLVDEAWG 429

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS-WTSIIVGTAQH 317
             + +    G    L    A+ D+  +   +  A D   +MR +   S W++++   + H
Sbjct: 430 YFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVH 489

Query: 318 GQAE 321
              E
Sbjct: 490 KNLE 493



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/266 (25%), Positives = 131/266 (49%), Gaps = 3/266 (1%)

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
            S + ++S Y       +A+ +F+      +  W +++           A  SF+EMR  
Sbjct: 40  TSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQSLFSRALASFVEMRAS 99

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
           G    D  V  S++ +C     L  G+ +HG ++ LG +  L+  NA+++MY+K   I +
Sbjct: 100 G-RCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDS 158

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
            + +F  M RKDVVS+ ++I G AQ G  E+ L +  EM ++ +KP+  T   ++   S 
Sbjct: 159 VRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFSE 218

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
              V KG+++   +I   GI   +   + L+D+ ++S  ++++E +   + +  D  +W 
Sbjct: 219 YVDVLKGKEIHGYVIRK-GIDSDVYIGSSLVDMYAKSARIEDSERVFSHL-YRRDSISWN 276

Query: 412 ALLSACKHHRNTEMGTRVANHLLSLK 437
           +L++    +       R+   ++S K
Sbjct: 277 SLVAGYVQNGRYNEALRLFRQMVSAK 302


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 242/650 (37%), Positives = 357/650 (54%), Gaps = 78/650 (12%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA  +     K +H+  I+ G      + N LID Y KC  ++ A ++   M  +D 
Sbjct: 266 LPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDV 325

Query: 70  VSWASILTAYNQA----------------NLPQKTISIFSTML----------ALDKLQ- 102
           VSW +++T Y Q+                N+P   I+  + +           ALD  Q 
Sbjct: 326 VSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQ 385

Query: 103 -------PDHFVFASLVKACGSLGATRLGKQVHA-----CFV-------LSPFCDDDVVK 143
                  P+     SL+ AC SLGA   G + HA     C +            +D VV 
Sbjct: 386 MILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVH 445

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           ++L+DMY+KC     AR +F+SI  +                              RN+ 
Sbjct: 446 NALIDMYSKCRSFKAARTIFNSIPRRE-----------------------------RNVV 476

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIHG 262
            WT ++ G  Q  +  DA   F EM  +   +  +   +S I+ ACA+ + L +GKQIH 
Sbjct: 477 TWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHA 536

Query: 263 LVIAL-GYESCL-FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
            V     YES + F++N ++DMY+KC D+  A+++F  M +++ VSWTS++ G   HG+ 
Sbjct: 537 YVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRG 596

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           +E L ++D+M  AG  P++++F+ L+YACSH G+V +G   F  M  DYG+  S QHY C
Sbjct: 597 KEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLDYFDIMRSDYGVIASAQHYAC 656

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DLL+RSG LD+A   I+ MP EP    W ALLSAC+ H N E+     N L+S+K E+
Sbjct: 657 VIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSACRVHSNVELAEYALNKLVSMKAEN 716

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
             SY L+SN+YA+A  W+ V+++R+LM    +KK PG S+++  KG+  F+ G+ SHPL 
Sbjct: 717 DGSYTLISNIYATARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPLS 776

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
            EI+ LL  L   +K  GYVP+T+  LHD++ +EK   L  HSE+LA+AYGLL + PG  
Sbjct: 777 PEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLTEHSEKLALAYGLLTTSPGCP 836

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +R+ KNLRVCGDCH     IS+I   EI+VRD++R+HHFK+G CSC  +W
Sbjct: 837 IRITKNLRVCGDCHSAFIYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 232/475 (48%), Gaps = 41/475 (8%)

Query: 8   HRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR 67
           + L+ C       +    H  I   G      + N L+  Y +   ++ A  + +E+ ++
Sbjct: 154 YALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDEITRK 213

Query: 68  ---DHVSWASILTAYNQANLPQKTISIFSTMLAL-----DKLQPDHFVFASLVKACGSLG 119
              D +SW SI+ A+ + + P+  + +FS M  +        + D     +++ AC SL 
Sbjct: 214 GIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPACASLK 273

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
           A    K++H+  + +    D  V ++L+D YAKCG   +A  VF+ ++ K+ VSW AM++
Sbjct: 274 ALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVT 333

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFL----WTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
            Y +SG+   A E+F+     N+ L    W+A+++G  Q     +A  +F +M   G + 
Sbjct: 334 GYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMILYGSE- 392

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF----------------ISNAI 279
            + + + S++ ACA+   L  G + H    A   + CL                 + NA+
Sbjct: 393 PNSVTIISLLSACASLGALSQGMETH----AYSLKKCLLSLDNDFGGDGDGEDLVVHNAL 448

Query: 280 VDMYAKCSDIIAAKDIFGRM--RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA--GV 335
           +DMY+KC    AA+ IF  +  R ++VV+WT +I G AQ+G + + L L+ EM+S    V
Sbjct: 449 IDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAV 508

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY-TCLLDLLSRSGHLDEA 394
            PN  T   ++ AC+H+  +  G+++   +   +    S+     CL+D+ S+ G +D A
Sbjct: 509 APNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTA 568

Query: 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL--LSLKPEDPSSYILL 447
            N+  +MP + +E +W +++S    H   +    + + +      P+D S  +LL
Sbjct: 569 RNVFDSMP-KRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLL 622



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 144/631 (22%), Positives = 259/631 (41%), Gaps = 150/631 (23%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYG---------PLPN-----------T 43
           +H+   L+ C   +   TV+ +H +II  GL  Y          PLP+            
Sbjct: 32  THFASLLKEC---RSVNTVRQIHQKIIAYGLLSYPASLLSVSLPPLPSHSYVSPKSLGTG 88

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           ++ +Y  C     A  +LE +     V W  ++ A+ +     + I +   ML     +P
Sbjct: 89  VVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGT-KP 147

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           DHF     +KACG L + R G   H     + F  +  V ++LV MY++ G   +A  VF
Sbjct: 148 DHFTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVF 207

Query: 164 DSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
           D I  K   + +SW ++++A+ +    + A+++F +         T +V    ++ NE  
Sbjct: 208 DEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEM--------TTIVHE--KATNE-- 255

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
                   R + + IV+      I+ ACA+   L   K+IH   I  G  +  F+ NA++
Sbjct: 256 --------RSDIISIVN------ILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALI 301

Query: 281 DMYAKCS---------------DII----------------AAKDIFGRMRRK----DVV 305
           D YAKC                D++                AA ++F  MR++    DV+
Sbjct: 302 DTYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVI 361

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK----- 360
           +W+++I G AQ G  +E L  + +M+  G +PN VT + L+ AC+ +G + +G +     
Sbjct: 362 TWSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYS 421

Query: 361 ----------------------LFKSMIEDYGITPSLQ-----------------HYTCL 381
                                 +  ++I+ Y    S +                  +T +
Sbjct: 422 LKKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVM 481

Query: 382 LDLLSRSGHLDEAENLIKAM---PF--EPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
           +   ++ G  ++A  L   M   P+   P+  T + +L AC H  +  MG ++  ++   
Sbjct: 482 IGGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRH 541

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETS 496
              + S Y + + +    +    V   R +   M  + E  ++ +  G G H    G   
Sbjct: 542 HEYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMH----GRGK 597

Query: 497 HPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
             L  +IF+       +M++ G+VPD  S L
Sbjct: 598 EAL--DIFD-------KMQKAGFVPDDISFL 619


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 344/602 (57%), Gaps = 34/602 (5%)

Query: 10   LRVCARHQIALTV-KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
            LR C+     L + + +H   +K G      +  TLID Y K   ++ A  L +     D
Sbjct: 1012 LRACSSLIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLD 1071

Query: 69   HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
               W +++  Y   N  +K + +FS ++     + D    A+  KACG L     GKQ+H
Sbjct: 1072 LACWNAMMFGYIIGNDGKKALELFS-LIHKSGEKSDQITLATAAKACGCLVLLDQGKQIH 1130

Query: 129  ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
            A  + + F  D  V S ++DMY KCG   NA  VF+ I   + V+W              
Sbjct: 1131 AHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAW-------------- 1176

Query: 189  DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
                             T+++SG V + NE  A   +  MR+  V + D    ++++ A 
Sbjct: 1177 -----------------TSMISGCVDNGNEDQALRIYHRMRQSRV-MPDEYTFATLIKAS 1218

Query: 249  ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
            +    LE G+Q+H  VI L   S  F+  ++VDMYAKC +I  A  +F +M  +++  W 
Sbjct: 1219 SCVTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWN 1278

Query: 309  SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            +++VG AQHG AEE + L+  M S G++P+ V+F+G++ ACSH GL  +  +   SM  D
Sbjct: 1279 AMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPND 1338

Query: 369  YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
            YGI P ++HY+CL+D L R+G + EA+ +I+ MPF+       ALL AC+   + E G R
Sbjct: 1339 YGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVETGKR 1398

Query: 429  VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            VA  L +L+P D ++Y+LLSN+YA+A  W  V+  RK+M    VKK+PG+S+I+     H
Sbjct: 1399 VAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLH 1458

Query: 489  IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            +F   + SHP  D I++ + E+   ++  GYVPDT  VL D+E +EKER L++HSE+LA+
Sbjct: 1459 LFVVDDRSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAI 1518

Query: 549  AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
            AYGL+ +   T +RV+KNLRVCGDCH  +K IS++ +REIV+RDA R+HHF+DG CSC D
Sbjct: 1519 AYGLISTPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGD 1578

Query: 609  FW 610
            +W
Sbjct: 1579 YW 1580



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 113/404 (27%), Positives = 204/404 (50%), Gaps = 38/404 (9%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            K +H   +K GL     + N+L++ Y K     +A  +  +M   D +SW S++++  Q+
Sbjct: 924  KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQS 983

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSL-GATRLGKQVHACFVLSPFCDDDV 141
            +L ++++++F  +L  + L+PDHF  AS+++AC SL     + +Q+H   + +    D  
Sbjct: 984  SLEEESVNLFIDLLH-EGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSF 1042

Query: 142  VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
            V ++L+D+Y+K                               SG+ ++A  +F+     +
Sbjct: 1043 VATTLIDVYSK-------------------------------SGKMEEAEFLFQNKDDLD 1071

Query: 202  LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
            L  W A++ G +   +   A   F  + + G +  D + L++   AC    +L+ GKQIH
Sbjct: 1072 LACWNAMMFGYIIGNDGKKALELFSLIHKSG-EKSDQITLATAAKACGCLVLLDQGKQIH 1130

Query: 262  GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
               I  G++S L +++ I+DMY KC D++ A  +F  +   D V+WTS+I G   +G  +
Sbjct: 1131 AHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNED 1190

Query: 322  ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-DYGITPSLQHYTC 380
            + L +Y  M  + V P+E TF  LI A S V  + +GR+L  ++I+ D    P +   T 
Sbjct: 1191 QALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TS 1248

Query: 381  LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
            L+D+ ++ G++++A  L K M    +   W A+L     H N E
Sbjct: 1249 LVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAE 1291



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 209/457 (45%), Gaps = 57/457 (12%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            LR        L  K  HA+I+  G      L N L+  Y KC  +  A  + +  P+RD 
Sbjct: 628  LRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDL 687

Query: 70   VSWASILTAY------NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
            V+W +IL AY      N  N  Q+ + +F  +L            A ++K C + G    
Sbjct: 688  VTWNAILGAYAASVDSNDGN-AQEGLHLFR-LLRASLGSTTRMTLAPVLKLCLNSGCLWA 745

Query: 124  GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
             + VH   +      D  V  +LV++Y+KCG   +AR +FD ++ ++ V W  ML  Y +
Sbjct: 746  AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQ 805

Query: 184  SGRKKDAMEIFEQ---APVR---------------------------------------- 200
             G +K+A ++F +   + +R                                        
Sbjct: 806  LGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKLSLSDD 865

Query: 201  --NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
              ++F W   +S  + + +   A   F+ M    +D  D + L  ++ A A    LELGK
Sbjct: 866  NPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNID-YDAVTLLVVLAAVAGTDDLELGK 924

Query: 259  QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
            Q+HG+ +  G +S + ++N++V+MY+K      A+++F  M+  D++SW S+I   AQ  
Sbjct: 925  QVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSS 984

Query: 319  QAEETLALYDEMVSAGVKPNEVTFVGLIYACSH-VGLVGKGRKLFKSMIEDYGITPSLQH 377
              EE++ L+ +++  G+KP+  T   ++ ACS  +  +   R++    ++   I  S   
Sbjct: 985  LEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHALKTGNIADSFV- 1043

Query: 378  YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
             T L+D+ S+SG ++EAE L +    + D   W A++
Sbjct: 1044 ATTLIDVYSKSGKMEEAEFLFQNKD-DLDLACWNAMM 1079


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 219/597 (36%), Positives = 346/597 (57%), Gaps = 41/597 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K  H Q +  G      + + LID Y KC  +  A  L +E+P+R+ V+W S++T Y Q 
Sbjct: 102 KQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQN 161

Query: 83  NLPQKTISIFSTMLALDKLQP---------DHFVFASLVKACGSLGATRLGKQVHACFVL 133
           +   + + +F   L  +K +          D     S++ AC  +    + + VH   + 
Sbjct: 162 DDAHEALMVFKEFL-FEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIK 220

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
                   V+++L+D YAKCG  + +R VFD +  K+ VSW +M++ YA++G   DA E+
Sbjct: 221 VGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEV 280

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
           F                                 M + G    + + LS+++ ACA+   
Sbjct: 281 FHG-------------------------------MLKAGGGKYNEVTLSTLLLACAHEGA 309

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L +G  +H  VI +GY + + ++ +I+DMY KC     A++ F  M+ K+V SWT++I G
Sbjct: 310 LRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAG 369

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
              HG A E L ++ +M+ AGVKPN +TF+ ++ ACSH G + +G + F +M  +Y + P
Sbjct: 370 YGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEP 429

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
            ++HY C++DLL R+G++ EA NLIK+M    D   W +LL+AC+ H++ E+    A  L
Sbjct: 430 GVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAACRIHKDVELAEISAREL 489

Query: 434 LSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAG 493
             L P +   Y+LL+N+YA A  W+ V ++R L+    + K PGYS +E     H+F  G
Sbjct: 490 FKLDPSNCGYYVLLANIYADAGRWKDVERMRILVKDRGLVKPPGYSLVELKGRVHVFLVG 549

Query: 494 ETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLL 553
           +  HP  ++I++ L EL  +++  GYVP+ +SVLHD++++EKE  +  HSE+LAVA+G++
Sbjct: 550 DKEHPQHEKIYKYLEELSVKLQEAGYVPNMASVLHDVDEEEKEMIVRVHSEKLAVAFGVM 609

Query: 554 KSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            S+PG+ + V+KNLRVCGDCH V+K+IS+I  REI+VRDA R+HHFKDG CSC D+W
Sbjct: 610 NSIPGSTIHVIKNLRVCGDCHTVIKLISKIVSREIIVRDAKRFHHFKDGLCSCGDYW 666



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 204/420 (48%), Gaps = 41/420 (9%)

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           + D  SW S++    +     +++  FS M  LD ++P+   F   +K+C +L     GK
Sbjct: 44  RTDVYSWNSLIAELARGGDSCESLRAFSWMRKLD-IKPNRSTFPCAIKSCSALFDLNSGK 102

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q H   ++  F  D  V S+L+DMY+KCG  +NAR +FD I  +N V+WT++++ Y ++ 
Sbjct: 103 QAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQND 162

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI---VDPLVLS 242
              +A+ +F++                          + F +    G ++   VD + + 
Sbjct: 163 DAHEALMVFKE--------------------------FLFEKSEGNGEEVGTSVDSVAMI 196

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           S++ AC+  +   + + +HG+ I +G +  + + N ++D YAKC ++  ++ +F  M  K
Sbjct: 197 SVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEK 256

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSA-GVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           DVVSW S+I   AQ+G + +   ++  M+ A G K NEVT   L+ AC+H G +  G  L
Sbjct: 257 DVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCL 316

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
              +I+  G   ++   T ++D+  + G  + A N    M  E +  +W A+++    H 
Sbjct: 317 HDQVIK-MGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMK-EKNVRSWTAMIAGYGMHG 374

Query: 422 NTEMGTRVANHLL--SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM--EVKKEPG 477
                  V   ++   +KP    +YI   +V A+ +    + +  +  + M  E   EPG
Sbjct: 375 FAREALDVFYQMIWAGVKP----NYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPG 430



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/314 (26%), Positives = 144/314 (45%), Gaps = 34/314 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C+R       + +H   IK+GL +   + NTL+DAY KC  V  +  + ++M ++D 
Sbjct: 199 LSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDV 258

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S++  Y Q  L      +F  ML     + +    ++L+ AC   GA R+G  +H 
Sbjct: 259 VSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHD 318

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +   + ++ ++ +S++DMY KCG    AR  FD +K KN  SWTAM++ Y   G  ++
Sbjct: 319 QVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFARE 378

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+++F Q       +W  +    +          +FI                S++ AC+
Sbjct: 379 ALDVFYQ------MIWAGVKPNYI----------TFI----------------SVLAACS 406

Query: 250 NFAVLELG-KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSW 307
           +   LE G +  + +      E  +     +VD+  +   I  A ++   M+ R+D V W
Sbjct: 407 HAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLW 466

Query: 308 TSIIVGTAQHGQAE 321
            S++     H   E
Sbjct: 467 GSLLAACRIHKDVE 480


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 220/586 (37%), Positives = 348/586 (59%), Gaps = 6/586 (1%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA +++ GL+    L   L  +Y     +  +  +     + +  S+++I+ ++ Q+ L
Sbjct: 66  IHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQSRL 125

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
             +    +S ML+   ++P+ F F+S++K+C    +   GK +H   +      D  V++
Sbjct: 126 FDRAFGYYSQMLSCG-VEPNAFTFSSVLKSC----SLESGKVLHCQAIKLGLGSDLYVRT 180

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
            LVD+YA+ G    AR +FD +  ++ VS T ML+ Y++ G    A  +FE    R++  
Sbjct: 181 GLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVC 240

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W  ++ G  QS    ++   F  M      I + + + +++ AC     LE G+ IH  +
Sbjct: 241 WNVMIGGYAQSGVPNESLKLFRRMLVAKA-IPNEVTVLAVLSACGQLGALESGRWIHSYI 299

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
              G +  + +  A++DMY+KC  +  A+ +F R+R KDVV+W S+IVG A HG ++  L
Sbjct: 300 ENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGFSQHAL 359

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            L++EM   G KP ++TF+G++ AC H GLV +GR  F+ M + YGI P ++HY C+++L
Sbjct: 360 QLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYGCMVNL 419

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
           L R+GHL+EA  L+K M    D   W  LL  C+ H N ++G  +A  L+  K  +  +Y
Sbjct: 420 LGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKLGEEIAKFLVDQKLANSGTY 479

Query: 445 ILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIF 504
           +LLSN+YA+   W+ V+K+R LM    ++KE G S IE     H F AGE  HP   EI+
Sbjct: 480 VLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCSSIEVDNKVHEFVAGERKHPKSKEIY 539

Query: 505 ELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVV 564
            +L E+++ +K RGY P T  VLHD+ +++KE+ L  HSE+LA+A+GL+ + PGT +++V
Sbjct: 540 VMLNEINSWLKARGYTPQTDVVLHDLREEQKEQSLEVHSEKLAIAFGLISTKPGTTVKIV 599

Query: 565 KNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           KNLRVC DCH VMKMIS IT R+IV+RD  R+HHF+DG CSC D+W
Sbjct: 600 KNLRVCSDCHTVMKMISEITGRKIVMRDRNRFHHFEDGLCSCGDYW 645



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 99/205 (48%), Gaps = 32/205 (15%)

Query: 23  KTLHAQIIKLGL------------------------HQYGPLP-------NTLIDAYGKC 51
           K LH Q IKLGL                          +  +P        T++  Y K 
Sbjct: 161 KVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKM 220

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
             +  A  L E M +RD V W  ++  Y Q+ +P +++ +F  ML + K  P+     ++
Sbjct: 221 GELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRML-VAKAIPNEVTVLAV 279

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           + ACG LGA   G+ +H+         +  V ++L+DMY+KCG   +AR VFD I+ K+ 
Sbjct: 280 LSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDV 339

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQ 196
           V+W +M+  YA  G  + A+++FE+
Sbjct: 340 VAWNSMIVGYAMHGFSQHALQLFEE 364



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 160/374 (42%), Gaps = 74/374 (19%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           FASL+    S+       Q+HA  +      + ++   L   YA  G  + +  VF++  
Sbjct: 50  FASLIDKSKSVAHLL---QIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFD 106

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
             N  S++A++ ++                               VQSR    AF  + +
Sbjct: 107 EPNVFSFSAIIHSH-------------------------------VQSRLFDRAFGYYSQ 135

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M   GV+  +    SS++ +C+    LE GK +H   I LG  S L++   +VD+YA+  
Sbjct: 136 MLSCGVE-PNAFTFSSVLKSCS----LESGKVLHCQAIKLGLGSDLYVRTGLVDVYARGG 190

Query: 288 DIIAAKDIFGR-------------------------------MRRKDVVSWTSIIVGTAQ 316
           D++ A+ +F +                               M+ +DVV W  +I G AQ
Sbjct: 191 DVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMKERDVVCWNVMIGGYAQ 250

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
            G   E+L L+  M+ A   PNEVT + ++ AC  +G +  GR +  S IE+ GI  ++ 
Sbjct: 251 SGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRWI-HSYIENKGIQINVH 309

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
             T L+D+ S+ G L++A  L+     + D   W +++     H  ++   ++   +   
Sbjct: 310 VGTALIDMYSKCGSLEDAR-LVFDRIRDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTET 368

Query: 437 --KPEDPSSYILLS 448
             KP D +   +LS
Sbjct: 369 GHKPTDITFIGILS 382



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 1/116 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C +     + + +H+ I   G+     +   LID Y KC  ++ A  + + +  +D 
Sbjct: 280 LSACGQLGALESGRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDV 339

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           V+W S++  Y      Q  + +F  M      +P    F  ++ ACG  G    G+
Sbjct: 340 VAWNSMIVGYAMHGFSQHALQLFEEMTETGH-KPTDITFIGILSACGHGGLVEEGR 394


>gi|357507131|ref|XP_003623854.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498869|gb|AES80072.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 865

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/609 (37%), Positives = 353/609 (57%), Gaps = 6/609 (0%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           +L   + CA    AL VK +H    + G+     + N LI AYGKC  V+ A  + +++ 
Sbjct: 167 FLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLV 226

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            RD VSW S+ + Y +   P+K + +F  M     ++P+    +S++ AC  L   + GK
Sbjct: 227 VRDVVSWTSLSSCYVKCGFPRKGMDVFREM-GWSGVKPNPMTVSSILPACAELKDLKSGK 285

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++H   V      +  V S+LV +YAKC     AR VFD +  ++ VSW  +L+AY ++ 
Sbjct: 286 EIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNK 345

Query: 186 RKKDAMEIF---EQAPVR-NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
             +    +F    +  VR +   W A++ G +++    +A   F +M++ G    + + +
Sbjct: 346 EYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFK-PNEITI 404

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           SSI+ AC+    L +GK+IH  V        L  + A++ MYAKC D+  ++++F  MRR
Sbjct: 405 SSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRR 464

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           KDVV+W ++I+  A HG  +E L L+D+M+ + V+PN VTF G++  CSH  LV +G ++
Sbjct: 465 KDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQI 524

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F SM  D+ + P   HY+C++D+ SR+G L+EA   I+ MP EP    W ALL+AC+ ++
Sbjct: 525 FNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYK 584

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           N E+    A  L  ++P +P +Y+ L N+  +A MW   S+VR LM    + K PG S++
Sbjct: 585 NVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWL 644

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           + G   H F  G+ S+   D+I+  L EL  +MK  GY PDT  VL D++Q+EK   L  
Sbjct: 645 QVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCN 704

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSE+LAVA+G+L     + +RV KNLR+CGDCH  +K +S++    IVVRD+ R+HHFK+
Sbjct: 705 HSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKN 764

Query: 602 GKCSCNDFW 610
           G CSC D W
Sbjct: 765 GNCSCKDLW 773


>gi|124360227|gb|ABN08240.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 687

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/609 (37%), Positives = 353/609 (57%), Gaps = 6/609 (0%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           +L   + CA    AL VK +H    + G+     + N LI AYGKC  V+ A  + +++ 
Sbjct: 81  FLAAAKACAVSGDALRVKEVHDDATRCGVMSDVFVGNALIHAYGKCKCVEGARRVFDDLV 140

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            RD VSW S+ + Y +   P+K + +F  M     ++P+    +S++ AC  L   + GK
Sbjct: 141 VRDVVSWTSLSSCYVKCGFPRKGMDVFREM-GWSGVKPNPMTVSSILPACAELKDLKSGK 199

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++H   V      +  V S+LV +YAKC     AR VFD +  ++ VSW  +L+AY ++ 
Sbjct: 200 EIHGFAVRHGMVVNLFVCSALVSLYAKCLSVREARMVFDLMPHRDVVSWNGVLTAYFKNK 259

Query: 186 RKKDAMEIF---EQAPVR-NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
             +    +F    +  VR +   W A++ G +++    +A   F +M++ G    + + +
Sbjct: 260 EYEKGFSLFLKMSRDGVRADEATWNAVIGGCMENGRSEEAVEMFRKMQKMGFK-PNEITI 318

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           SSI+ AC+    L +GK+IH  V        L  + A++ MYAKC D+  ++++F  MRR
Sbjct: 319 SSILPACSFSENLRMGKEIHCYVFRHWKVGDLTSTTALLYMYAKCGDLNLSRNVFDMMRR 378

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           KDVV+W ++I+  A HG  +E L L+D+M+ + V+PN VTF G++  CSH  LV +G ++
Sbjct: 379 KDVVAWNTMIIANAMHGNGKEALFLFDKMLLSRVQPNSVTFTGVLSGCSHSRLVEEGVQI 438

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F SM  D+ + P   HY+C++D+ SR+G L+EA   I+ MP EP    W ALL+AC+ ++
Sbjct: 439 FNSMGRDHLVEPDANHYSCVVDIYSRAGRLNEAYKFIQGMPMEPTASAWGALLAACRVYK 498

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           N E+    A  L  ++P +P +Y+ L N+  +A MW   S+VR LM    + K PG S++
Sbjct: 499 NVELAKISAKKLFEIEPNNPGNYVSLFNILVTAKMWSEASQVRILMKERGITKTPGCSWL 558

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           + G   H F  G+ S+   D+I+  L EL  +MK  GY PDT  VL D++Q+EK   L  
Sbjct: 559 QVGNKVHTFVVGDKSNIESDKIYNFLDELVEKMKMAGYKPDTDYVLQDIDQEEKAESLCN 618

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSE+LAVA+G+L     + +RV KNLR+CGDCH  +K +S++    IVVRD+ R+HHFK+
Sbjct: 619 HSEKLAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSKVVGVIIVVRDSLRFHHFKN 678

Query: 602 GKCSCNDFW 610
           G CSC D W
Sbjct: 679 GNCSCKDLW 687


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 214/560 (38%), Positives = 335/560 (59%), Gaps = 3/560 (0%)

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
           +L+ YA+ +  ++   +   +  ++  ++    P K    ++ ML   ++ PD+  F  L
Sbjct: 67  NLLGYAYGIFSQIQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLK-SRIWPDNITFPFL 125

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           +KA   +    +G+Q H+  V   F +D  V++SLV MYA CGL   A  +F  +  ++ 
Sbjct: 126 IKASTEMECVVVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDV 185

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           VSWT+M++ Y + G  +DA E+F++ P RNLF W+ +++G  ++     A   F  M+RE
Sbjct: 186 VSWTSMVAGYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKRE 245

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
           GV + +  V+ S++ +CA+   LE G++ H  V+       L +  A+VDMY +C +I  
Sbjct: 246 GV-VANETVMVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEK 304

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           A  +F  +  KD +SW+SII G A HG A + +  + +MV  G  P ++T   ++ ACSH
Sbjct: 305 AIRVFEELPDKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSH 364

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
            GLV KG +++++M  DYGI P L+HY C++D+L R+G L EAEN I  MP +P+ P   
Sbjct: 365 GGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILG 424

Query: 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
           ALL ACK ++NTE+  RV N L+ +KPE    Y+LLSN+YA A  W+ +  +R +M    
Sbjct: 425 ALLGACKIYKNTEVAERVGNMLIEVKPEHSGYYVLLSNIYACAGQWEKLESLRDIMKEKL 484

Query: 472 VKKEPGYSYIEF-GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDM 530
           VKK PG+S IE  GK +      +  HP   +I  L  E+  +++  GY  +T     D+
Sbjct: 485 VKKPPGWSLIEIDGKINKFSMGDDQKHPEMGKIKRLWEEILGKIRLIGYKGNTGDAFFDV 544

Query: 531 EQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVV 590
           +++EKE  +  HSE+LA+AYG++K+  GT +R+VKNLRVC DCH   K+IS +  RE +V
Sbjct: 545 DEEEKETAIHMHSEKLAIAYGMMKTKTGTTIRIVKNLRVCEDCHTATKLISEVYGREFIV 604

Query: 591 RDATRYHHFKDGKCSCNDFW 610
           RD  R+HHF++G CSC D+W
Sbjct: 605 RDRNRFHHFRNGLCSCRDYW 624



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 148/359 (41%), Gaps = 67/359 (18%)

Query: 26  HAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN-- 83
           H+QI++ G      + N+L+  Y  C L+  A  +  +MP RD VSW S++  Y +    
Sbjct: 142 HSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVAGYCKCGMV 201

Query: 84  ---------LPQKTISIFSTML-----------ALDKLQ--------PDHFVFASLVKAC 115
                    +P + +  +S M+           A+D  +         +  V  S++ +C
Sbjct: 202 EDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETVMVSVISSC 261

Query: 116 GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWT 175
             LGA   G++ H   V S    + ++ ++LVDMY +CG    A  VF+ +  K+S+SW+
Sbjct: 262 AHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELPDKDSLSWS 321

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
           +++   A  G    A+  F Q                               M R G   
Sbjct: 322 SIIKGLAVHGHAHKAIHYFSQ-------------------------------MVRLGFSP 350

Query: 236 VDPLVLSSIVGACANFAVLELGKQIH-GLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
            D + L++++ AC++  +++ G +I+  +    G E  L     IVDM  +   +  A++
Sbjct: 351 RD-ITLTAVLSACSHGGLVDKGLEIYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAEN 409

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGL---IYACS 350
              +M  K        ++G  +  +  E       M+   VKP    +  L   IYAC+
Sbjct: 410 FILKMPVKPNAPILGALLGACKIYKNTEVAERVGNMLIE-VKPEHSGYYVLLSNIYACA 467


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/588 (38%), Positives = 340/588 (57%), Gaps = 36/588 (6%)

Query: 25   LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
            +H   IK G+     +   LID Y K   +  A  LL      D  SW +I+  Y ++N 
Sbjct: 1020 VHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNK 1079

Query: 85   PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
             +K +  FS M  +  +  D    A+ +KA G L   + GKQ+ A  +   F +D  V S
Sbjct: 1080 SRKALEHFSLMHEM-GIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSS 1138

Query: 145  SLVDMYAKCG-LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
             ++DMY KCG +PN                                A+E+F +    +  
Sbjct: 1139 GVLDMYIKCGDMPN--------------------------------ALELFGEISRPDEV 1166

Query: 204  LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
             WT ++SG +++ +E  A   +  MR  GV   D    ++++ A +    LE GKQIH  
Sbjct: 1167 AWTTMISGYIENGDEDHALSVYHLMRVSGVQ-PDEYTFATLIKASSCLTALEQGKQIHAN 1225

Query: 264  VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
            V+ L Y    F+  ++VDMY KC  +  A  +F +M  + VV W ++++G AQHG  +E 
Sbjct: 1226 VVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEA 1285

Query: 324  LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
            L L+  M S G++P++VTF+G++ ACSH GL  +  K F +M + YGITP ++HY+CL+D
Sbjct: 1286 LNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVD 1345

Query: 384  LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
             L R+G + EAEN+I +MPF+     + ALL AC+   + E   RVA+ LL+L P D S+
Sbjct: 1346 ALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSA 1405

Query: 444  YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
            Y+LLSN+YA++  W  V+  R +M +  VKK+PG+S+I+     H+F   + SHP    I
Sbjct: 1406 YVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLI 1465

Query: 504  FELLTELDAEMKRRG-YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
            +E + +L   ++  G YVPDT   L D+E++EKER L++HSE+LA+A+GL+ + P   +R
Sbjct: 1466 YEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIR 1525

Query: 563  VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            V+KNLRVCGDCH  +K IS++T+REIV+RDA R+HHF++G CSC D+W
Sbjct: 1526 VIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 129/438 (29%), Positives = 214/438 (48%), Gaps = 79/438 (18%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            + +HA +IK       P+ N+L++ Y K  +V  A       P+ D +SW +++++Y Q 
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQN 973

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKAC--GSLGAT-RLGKQVHACFVLSPFCDD 139
            NL  + I  F  +L  D L+PD F  AS+++AC  G  G    LG QVH           
Sbjct: 974  NLEMEAICTFRDLLR-DGLKPDQFTLASVLRACSTGDEGEYFTLGSQVH----------- 1021

Query: 140  DVVKSSLVDMYA-KCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
                     +YA KCG+ N+            S   TA++  Y++ G+  +A  +     
Sbjct: 1022 ---------VYAIKCGIIND------------SFVSTALIDLYSKGGKMDEAEFLLHGKY 1060

Query: 199  VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
              +L  W A++ G ++S     A   F  M   G+ I D + L++ + A      L+ GK
Sbjct: 1061 DFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPI-DEITLATAIKASGCLINLKQGK 1119

Query: 259  QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
            QI    I LG+ + L++S+ ++DMY KC D+  A ++FG + R D V+WT++I G  ++G
Sbjct: 1120 QIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENG 1179

Query: 319  QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-DYGITPSLQH 377
              +  L++Y  M  +GV+P+E TF  LI A S +  + +G+++  ++++ DY    SL H
Sbjct: 1180 DEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDY----SLDH 1235

Query: 378  Y--TCLLDL-------------------------------LSRSGHLDEAENLIKAMP-- 402
            +  T L+D+                               L++ GH+DEA NL + M   
Sbjct: 1236 FVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSN 1295

Query: 403  -FEPDEPTWAALLSACKH 419
              +PD+ T+  +LSAC H
Sbjct: 1296 GIQPDKVTFIGVLSACSH 1313



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 120/447 (26%), Positives = 195/447 (43%), Gaps = 61/447 (13%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ- 81
            K  HA+I+  G      L N LI  Y KC  +  A  + ++   RD V+W SIL AY Q 
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQF 690

Query: 82   ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSL-----GATRLGKQVHACFVLSPF 136
            A+   + +     +  L  L+   F    L  A         G  ++ + VH   V   F
Sbjct: 691  ADSSYENVLEGFRLFGL--LREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF 748

Query: 137  CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA-------------- 182
              D  V  +LV++Y K GL   AR +FD +  +++V W  ML AY               
Sbjct: 749  ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSA 808

Query: 183  --RSGRKKD-----------------------------AMEIFEQAPVRNLFLWTALVSG 211
              RSG   D                             AM++F      N+F W   ++ 
Sbjct: 809  FHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTE 868

Query: 212  LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271
             + +   + A   F  + R  +   D + L  I+ A      L+LG+QIH LVI   +  
Sbjct: 869  FLHAGQIVAAIDCFKTLLRSTIG-HDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAP 927

Query: 272  CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
             + +SN++++MY+K   + AA+  F      D++SW ++I   AQ+    E +  + +++
Sbjct: 928  VVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLL 987

Query: 332  SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH----YTCLLDLLSR 387
              G+KP++ T   ++ ACS  G  G+   L  S +  Y I   + +     T L+DL S+
Sbjct: 988  RDGLKPDQFTLASVLRACS-TGDEGEYFTL-GSQVHVYAIKCGIINDSFVSTALIDLYSK 1045

Query: 388  SGHLDEAENLIKAMPFEPDEPTWAALL 414
             G +DEAE L+    ++ D  +W A++
Sbjct: 1046 GGKMDEAEFLLHG-KYDFDLASWNAIM 1071



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 27/217 (12%)

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
           +LGK+ HA  V S    D  + ++L+ MY+KCG   +AR VFD    ++ V+W ++L+AY
Sbjct: 628 KLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAY 687

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
           A+          F  +   N+                ++ F  F  +R  G  I   L L
Sbjct: 688 AQ----------FADSSYENV----------------LEGFRLFGLLREFGFSIT-RLTL 720

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           + ++  C     +++ + +HG  + +G+E  LF+S A+V++Y K   +  A+ +F +M  
Sbjct: 721 APLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPE 780

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           +D V W  ++    ++   +E L  +     +G  P+
Sbjct: 781 RDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFXPD 817



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 3/176 (1%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            K +HA ++KL       +  +L+D Y KC  VQ A+ +  +M  R  V W ++L    Q 
Sbjct: 1220 KQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQH 1279

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA-TRLGKQVHACFVLSPFCDDDV 141
                + +++F TM + + +QPD   F  ++ AC   G  +   K   A F       +  
Sbjct: 1280 GHVDEALNLFRTMQS-NGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIE 1338

Query: 142  VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGRKKDAMEIFEQ 196
              S LVD   + G    A  V  S+  K S S + A+L A    G  + A  + ++
Sbjct: 1339 HYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADK 1394


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/588 (38%), Positives = 340/588 (57%), Gaps = 36/588 (6%)

Query: 25   LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
            +H   IK G+     +   LID Y K   +  A  LL      D  SW +I+  Y ++N 
Sbjct: 1020 VHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNK 1079

Query: 85   PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
             +K +  FS M  +  +  D    A+ +KA G L   + GKQ+ A  +   F +D  V S
Sbjct: 1080 SRKALEHFSLMHEM-GIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSS 1138

Query: 145  SLVDMYAKCG-LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
             ++DMY KCG +PN                                A+E+F +    +  
Sbjct: 1139 GVLDMYIKCGDMPN--------------------------------ALELFGEISRPDEV 1166

Query: 204  LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
             WT ++SG +++ +E  A   +  MR  GV   D    ++++ A +    LE GKQIH  
Sbjct: 1167 AWTTMISGYIENGDEDHALSVYHLMRVSGVQ-PDEYTFATLIKASSCLTALEQGKQIHAN 1225

Query: 264  VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
            V+ L Y    F+  ++VDMY KC  +  A  +F +M  + VV W ++++G AQHG  +E 
Sbjct: 1226 VVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEA 1285

Query: 324  LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
            L L+  M S G++P++VTF+G++ ACSH GL  +  K F +M + YGITP ++HY+CL+D
Sbjct: 1286 LNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVD 1345

Query: 384  LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
             L R+G + EAEN+I +MPF+     + ALL AC+   + E   RVA+ LL+L P D S+
Sbjct: 1346 ALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADKLLALDPSDSSA 1405

Query: 444  YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
            Y+LLSN+YA++  W  V+  R +M +  VKK+PG+S+I+     H+F   + SHP    I
Sbjct: 1406 YVLLSNIYAASRQWDDVTDARNMMKLKNVKKDPGFSWIDVKNKVHLFVVDDRSHPQASLI 1465

Query: 504  FELLTELDAEMKRRG-YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
            +E + +L   ++  G YVPDT   L D+E++EKER L++HSE+LA+A+GL+ + P   +R
Sbjct: 1466 YEKIEDLMKRIREEGSYVPDTDFTLLDVEEEEKERALYYHSEKLAIAFGLISTPPSATIR 1525

Query: 563  VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            V+KNLRVCGDCH  +K IS++T+REIV+RDA R+HHF++G CSC D+W
Sbjct: 1526 VIKNLRVCGDCHSAIKCISKLTQREIVLRDANRFHHFRNGTCSCGDYW 1573



 Score =  182 bits (461), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 129/438 (29%), Positives = 214/438 (48%), Gaps = 79/438 (18%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            + +HA +IK       P+ N+L++ Y K  +V  A       P+ D +SW +++++Y Q 
Sbjct: 914  EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQN 973

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKAC--GSLGAT-RLGKQVHACFVLSPFCDD 139
            NL  + I  F  +L  D L+PD F  AS+++AC  G  G    LG QVH           
Sbjct: 974  NLEMEAICTFRDLLR-DGLKPDQFTLASVLRACSTGDEGEYFTLGSQVH----------- 1021

Query: 140  DVVKSSLVDMYA-KCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
                     +YA KCG+ N+            S   TA++  Y++ G+  +A  +     
Sbjct: 1022 ---------VYAIKCGIIND------------SFVSTALIDLYSKGGKMDEAEFLLHGKY 1060

Query: 199  VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
              +L  W A++ G ++S     A   F  M   G+ I D + L++ + A      L+ GK
Sbjct: 1061 DFDLASWNAIMFGYIKSNKSRKALEHFSLMHEMGIPI-DEITLATAIKASGCLINLKQGK 1119

Query: 259  QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
            QI    I LG+ + L++S+ ++DMY KC D+  A ++FG + R D V+WT++I G  ++G
Sbjct: 1120 QIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENG 1179

Query: 319  QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-DYGITPSLQH 377
              +  L++Y  M  +GV+P+E TF  LI A S +  + +G+++  ++++ DY    SL H
Sbjct: 1180 DEDHALSVYHLMRVSGVQPDEYTFATLIKASSCLTALEQGKQIHANVVKLDY----SLDH 1235

Query: 378  Y--TCLLDL-------------------------------LSRSGHLDEAENLIKAMP-- 402
            +  T L+D+                               L++ GH+DEA NL + M   
Sbjct: 1236 FVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSN 1295

Query: 403  -FEPDEPTWAALLSACKH 419
              +PD+ T+  +LSAC H
Sbjct: 1296 GIQPDKVTFIGVLSACSH 1313



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 197/447 (44%), Gaps = 61/447 (13%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ- 81
            K  HA+I+  G      L N LI  Y KC  +  A  + ++   RD V+W SIL AY Q 
Sbjct: 631  KRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQF 690

Query: 82   ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSL-----GATRLGKQVHACFVLSPF 136
            A+   + +     +  L  L+   F    L  A         G  ++ + VH   V   F
Sbjct: 691  ADSSYENVLEGFRLFGL--LREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF 748

Query: 137  CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA-------------- 182
              D  V  +LV++Y K GL   AR +FD +  +++V W  ML AY               
Sbjct: 749  ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSA 808

Query: 183  --RSG----------------------RKKDA-------MEIFEQAPVRNLFLWTALVSG 211
              RSG                      RK+ A       M++F      N+F W   ++ 
Sbjct: 809  FHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGSNIFAWNKKLTE 868

Query: 212  LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271
             + +   + A   F  + R  +   D + L  I+ A      L+LG+QIH LVI   +  
Sbjct: 869  FLHAGQIVAAIDCFKTLLRSTIG-HDSVTLVIILSAAVGADDLDLGEQIHALVIKSSFAP 927

Query: 272  CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
             + +SN++++MY+K   + AA+  F      D++SW ++I   AQ+    E +  + +++
Sbjct: 928  VVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISWNTMISSYAQNNLEMEAICTFRDLL 987

Query: 332  SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH----YTCLLDLLSR 387
              G+KP++ T   ++ ACS  G  G+   L  S +  Y I   + +     T L+DL S+
Sbjct: 988  RDGLKPDQFTLASVLRACS-TGDEGEYFTL-GSQVHVYAIKCGIINDSFVSTALIDLYSK 1045

Query: 388  SGHLDEAENLIKAMPFEPDEPTWAALL 414
             G +DEAE L+    ++ D  +W A++
Sbjct: 1046 GGKMDEAEFLLHG-KYDFDLASWNAIM 1071



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/217 (25%), Positives = 104/217 (47%), Gaps = 27/217 (12%)

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
           +LGK+ HA  V S    D  + ++L+ MY+KCG   +AR VFD    ++ V+W ++L+AY
Sbjct: 628 KLGKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAY 687

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
           A+          F  +   N+                ++ F  F  +R  G  I   L L
Sbjct: 688 AQ----------FADSSYENV----------------LEGFRLFGLLREFGFSIT-RLTL 720

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           + ++  C     +++ + +HG  + +G+E  LF+S A+V++Y K   +  A+ +F +M  
Sbjct: 721 APLLKLCLLSGFVQVSETVHGYAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPE 780

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           +D V W  ++    ++   +E L  +     +G  P+
Sbjct: 781 RDAVLWNVMLKAYVENSFQDEALRFFSAFHRSGFFPD 817



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 78/176 (44%), Gaps = 3/176 (1%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            K +HA ++KL       +  +L+D Y KC  VQ A+ +  +M  R  V W ++L    Q 
Sbjct: 1220 KQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAMLLGLAQH 1279

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA-TRLGKQVHACFVLSPFCDDDV 141
                + +++F TM + + +QPD   F  ++ AC   G  +   K   A F       +  
Sbjct: 1280 GHVDEALNLFRTMQS-NGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYGITPEIE 1338

Query: 142  VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGRKKDAMEIFEQ 196
              S LVD   + G    A  V  S+  K S S + A+L A    G  + A  + ++
Sbjct: 1339 HYSCLVDALGRAGRIQEAENVIASMPFKASASMYRALLGACRTKGDAETAKRVADK 1394


>gi|296087881|emb|CBI35164.3| unnamed protein product [Vitis vinifera]
          Length = 663

 Score =  440 bits (1131), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/595 (38%), Positives = 350/595 (58%), Gaps = 51/595 (8%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--RDHVSWASILTAY 79
            K +HA IIK   H    +P                   L + P        W  ++T+Y
Sbjct: 94  TKQIHAHIIKTHFHHALQIP-------------------LNDFPSGLSPSAQWNFVITSY 134

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            + N P+  +++++ +  +D  + D+F+  S++KACG +  T+LGK++H  FVL    D 
Sbjct: 135 TKRNQPRNALNVYAQLRKMD-FEVDNFMAPSVLKACGQVSWTQLGKEIHG-FVLKKGLDR 192

Query: 140 DV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSW----TAMLSAYARSGRKKDAMEIF 194
           DV V ++L+ MY +C     AR VFD +  ++ VSW    TA+L  YA+ G    A ++F
Sbjct: 193 DVFVGNALMLMYGECACVEYARLVFDKMMERDVVSWIPTTTALLDMYAKCGHLGLARQLF 252

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
                + +  WTA+++G ++S    +    FI M+ E +   +  +L        N   +
Sbjct: 253 NGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITML--------NKERV 304

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
           E+               C+ ++ A+VDMYAKC DI AA  +F     +D+  W +II G 
Sbjct: 305 EV--------------DCI-LNTALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGF 349

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
           A HG  EE L ++ EM   GVKPN++TF+GL++ACSH GLV +G+KLF+ M+  +G+ P 
Sbjct: 350 AMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQ 409

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           ++HY C++DLL R+G LDEA  +IK+MP +P+   W AL++AC+ H+N ++G   A  LL
Sbjct: 410 IEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLL 469

Query: 435 SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGE 494
            ++PE+    +L+SN+YA+A  W   + VRK M  + +KKEPG+S IE     H F  G+
Sbjct: 470 EIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKKEPGHSVIEVNGTVHEFLMGD 529

Query: 495 TSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLK 554
            SHP    I E+L E+  ++   GYVPDTS+VL +++++EKE  L +HSE+LA+A+GL+ 
Sbjct: 530 QSHPQIRRINEMLAEMRRKLNEAGYVPDTSTVLLNIDEEEKETALTYHSEKLAMAFGLIS 589

Query: 555 SVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + P T +R+VKNLRVC DCH   K++S+I  R I+VRD  R+HHF++G CSC D+
Sbjct: 590 TAPSTPIRIVKNLRVCNDCHAATKLLSKIYGRVIIVRDRNRFHHFREGYCSCGDY 644



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 76/340 (22%), Positives = 141/340 (41%), Gaps = 74/340 (21%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C +       K +H  ++K GL +   + N L+  YG+C  V+YA  + ++M +RD 
Sbjct: 166 LKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDV 225

Query: 70  VSWASILTA----YNQA-----------NLPQKTISIFSTMLA----LDKLQPDHFVFAS 110
           VSW    TA    Y +             L QKT+  ++ M+A     ++L+    +F  
Sbjct: 226 VSWIPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLFIR 285

Query: 111 LVKA-CGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           + +        T L K+            D ++ ++LVDMYAKCG  N A  +F     +
Sbjct: 286 MQEENIFPNEITMLNKERVEV--------DCILNTALVDMYAKCGDINAAGRLFIEAISR 337

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
           +   W A+++ +A  G  ++A++IF                                EM 
Sbjct: 338 DICMWNAIITGFAMHGYGEEALDIFA-------------------------------EME 366

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQI-------HGLVIALGYESCLFISNAIVDM 282
           R+GV   D +    ++ AC++  ++  GK++        GLV  + +  C+      VD+
Sbjct: 367 RQGVKPND-ITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCM------VDL 419

Query: 283 YAKCSDIIAAKDIFGRMRRK-DVVSWTSIIVGTAQHGQAE 321
             +   +  A ++   M  K + + W +++     H   +
Sbjct: 420 LGRAGLLDEAHEMIKSMPIKPNTIVWGALVAACRLHKNPQ 459


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/589 (38%), Positives = 338/589 (57%), Gaps = 35/589 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  ++ LGL     +  + +D Y K   ++ A  +  +MP R+ VSW ++++   + 
Sbjct: 251 KCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRN 310

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            L  ++  +F   L       D     SL++ C    +   GK +H C + S F  + ++
Sbjct: 311 GLVGESFDLFHR-LVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIRS-FESNLIL 368

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +++VD+Y+KC                               G  K A  +F +   RN+
Sbjct: 369 STAIVDLYSKC-------------------------------GSLKQATFVFNRMKDRNV 397

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WTA++ GL Q+ +  DA   F +M+ EG+   + +   S+V +CA+   L+ G+ IHG
Sbjct: 398 ITWTAMLVGLAQNGHAEDALRLFAQMQEEGI-AANSVTFVSLVHSCAHLGSLKRGRSIHG 456

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAE 321
            +  LG+   +    A+VDMYAKC  I  A+ IF      KDVV W S+I G   HG   
Sbjct: 457 HLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGY 516

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           + + +Y +M+  G+KPN+ TF+ L+ ACSH  LV +G  LF SM  D+ I P  +HY CL
Sbjct: 517 QAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACL 576

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLLSR+G  +EA+ LI+ MPF+P      ALLS C+ H+N  +G + ++ LL+L   +P
Sbjct: 577 VDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMNP 636

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
             YI+LSN+YA A  W  V  +R LM    +KK PGYS +E G   H F+AG+ SHP  +
Sbjct: 637 GIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVETGNWVHTFFAGDNSHPNWE 696

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           EI+  L  L + ++  GYVPDTS VL D++++ K R L+ HSERLA+A+GLL +  G+++
Sbjct: 697 EIYHFLESLRSAVETSGYVPDTSCVLRDVDEEMKVRMLWGHSERLAIAFGLLTTPAGSLI 756

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+ KNLRVCGDCH V K IS+I KREI+VRDA R+HHF +G+CSC D+W
Sbjct: 757 RITKNLRVCGDCHTVTKYISKIVKREIIVRDANRFHHFSNGECSCGDYW 805



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/434 (28%), Positives = 215/434 (49%), Gaps = 37/434 (8%)

Query: 30  IKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTI 89
           ++ G+ +   + +++I    K   +  A  + + MP +D V W SI+  Y QA       
Sbjct: 157 VEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAF 216

Query: 90  SIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM 149
            +F  M     ++P      SL++ACG +G  +LGK +H   +     +D +V +S VDM
Sbjct: 217 QLFFEMHG-SGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDM 275

Query: 150 YAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALV 209
           Y+K G   +AR VF  +  +N VSW AM+S   R+G   ++ ++F +             
Sbjct: 276 YSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHR------------- 322

Query: 210 SGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY 269
             LV+S                G D+     + S++  C+  A L  GK +HG  I   +
Sbjct: 323 --LVRSSG--------------GFDLT---TIVSLLQGCSQTASLATGKILHGCAIR-SF 362

Query: 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDE 329
           ES L +S AIVD+Y+KC  +  A  +F RM+ ++V++WT+++VG AQ+G AE+ L L+ +
Sbjct: 363 ESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQ 422

Query: 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389
           M   G+  N VTFV L+++C+H+G + +GR +   +    G    + + T L+D+ ++ G
Sbjct: 423 MQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFR-LGFAFDIVNMTALVDMYAKCG 481

Query: 390 HLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPEDPSSYILL 447
            ++ AE +        D   W ++++    H +      + + ++   LKP   +   LL
Sbjct: 482 KINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLL 541

Query: 448 SNVYASAAMWQHVS 461
           S    S  + Q +S
Sbjct: 542 SACSHSRLVEQGIS 555



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 196/427 (45%), Gaps = 38/427 (8%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
           I ++L  LR  +++ I   VK+ HAQII   L     +   L+ AY     ++ A ++ +
Sbjct: 31  IHNFLSLLRESSKNLI--WVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFD 88

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
           +  Q   +   ++L  Y Q+   ++T+ +F  M + + L+ D       +KAC S     
Sbjct: 89  QFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRN-LEVDSCSCTFALKACASSLDYE 147

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           +G ++ +  V      +  V SS++    K G    A+ VFD +  K+ V W +++  Y 
Sbjct: 148 MGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYV 207

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           ++G        F+                         AF  F EM   G+    P+ ++
Sbjct: 208 QAG-------CFDV------------------------AFQLFFEMHGSGIK-PSPITMT 235

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           S++ AC     L+LGK +HG V+ LG  + + +  + VDMY+K  DI +A+ +F +M  +
Sbjct: 236 SLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTR 295

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           ++VSW ++I G  ++G   E+  L+  +V +    +  T V L+  CS    +  G+ L 
Sbjct: 296 NLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILH 355

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
              I  +    +L   T ++DL S+ G L +A  +   M  + +  TW A+L     + +
Sbjct: 356 GCAIRSF--ESNLILSTAIVDLYSKCGSLKQATFVFNRMK-DRNVITWTAMLVGLAQNGH 412

Query: 423 TEMGTRV 429
            E   R+
Sbjct: 413 AEDALRL 419


>gi|449436619|ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  439 bits (1130), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/589 (36%), Positives = 350/589 (59%), Gaps = 4/589 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNT-LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           + LH  ++K GL QY    +T L+  Y  C  +  A  + +  P+ D ++W  I++AYN+
Sbjct: 138 RQLHGHVLKHGL-QYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNK 196

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
               +++  +F  M    ++ P       ++ AC  L   R GK+VH+         + V
Sbjct: 197 VGKFEESRRLFLVM-EDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLV 255

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           ++++++DMYA CG  ++A  +F S+  ++ +SWT ++S +   G    A   F++ P ++
Sbjct: 256 LENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKD 315

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
              WTA++ G ++S    +A   F  M+   V   D   + S++ ACA+   LELG+ I 
Sbjct: 316 YVSWTAMIDGYIRSNRFKEALELFRNMQATNVK-PDEFTMVSVLTACAHLGALELGEWIR 374

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             +     ++ LF+ NA++DMY KC D+  A+ IF  M ++D  +WT++IVG A +G  E
Sbjct: 375 TYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGE 434

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           + L ++  M+ A + P+E+T++G++ AC+H GLV KGRK F  M   +GI P++ HY CL
Sbjct: 435 KALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCL 494

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL+R+G L EA  +I+ MP + +   W ALL+ C+ +R ++M   V   +L L+P++ 
Sbjct: 495 VDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNG 554

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
           + Y+LL N+YA+   W  + ++R++M    +KK PG S IE     H F AG+ SHP   
Sbjct: 555 AVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKTPGCSLIEMNGRVHEFVAGDRSHPQTK 614

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            I   L ++  ++K  GY PD S V  D+ +++KE  +F HSE+LA+A+GL+ S PG  +
Sbjct: 615 NIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTI 674

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+ KNLR+C DCH + K++S++  RE++VRD TR+HHFK G CSC D+W
Sbjct: 675 RITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 723



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 201/429 (46%), Gaps = 74/429 (17%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLID-----AYGKCDLVQYAHHLLEEMPQRDHVSWASIL 76
           ++ +H Q IK GL+    L N ++       YG     QYA  L +E+P+ +   W +++
Sbjct: 34  LQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGD---FQYARRLFDEIPEPNLFIWNTMI 90

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
             Y++ + PQ  +S++  ML    ++PD + F  L K      A   G+Q+H   +    
Sbjct: 91  RGYSRLDFPQLGVSLYLEMLR-RGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGL 149

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             +  V ++LV MY  CG  + AR VFD     + ++W  ++SAY + G+       FE+
Sbjct: 150 QYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGK-------FEE 202

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
           +  R LFL       +++ +  +    + +            LVLS    AC+    L  
Sbjct: 203 S--RRLFL-------VMEDKQVLPTTVTLV------------LVLS----ACSKLKDLRT 237

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           GK++H  V     ES L + NA++DMYA C ++ +A  IF  M  +D++SWT+I+ G   
Sbjct: 238 GKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTN 297

Query: 317 HGQAE-------------------------------ETLALYDEMVSAGVKPNEVTFVGL 345
            G+ +                               E L L+  M +  VKP+E T V +
Sbjct: 298 LGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSV 357

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP 405
           + AC+H+G +  G +  ++ I+   I   L     L+D+  + G +D+AE++ + M  + 
Sbjct: 358 LTACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QR 415

Query: 406 DEPTWAALL 414
           D+ TW A++
Sbjct: 416 DKFTWTAMI 424



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 158/356 (44%), Gaps = 19/356 (5%)

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F++ P  NLF+W  ++ G  +          ++EM R GV   D      +     
Sbjct: 71  ARRLFDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVK-PDRYTFPFLFKGFT 129

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LE G+Q+HG V+  G +  +F+  A+V MY  C  +  A+ +F    + DV++W  
Sbjct: 130 RDIALEYGRQLHGHVLKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNM 189

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           II    + G+ EE+  L+  M    V P  VT V ++ ACS +  +  G+K+  S +++ 
Sbjct: 190 IISAYNKVGKFEESRRLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKV-HSYVKNC 248

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG-TR 428
            +  +L     ++D+ +  G +D A  + ++M    D  +W  ++S       T +G   
Sbjct: 249 KVESNLVLENAMIDMYADCGEMDSALGIFRSMN-NRDIISWTTIVSGF-----TNLGEID 302

Query: 429 VANHLLSLKPE-DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
           VA +     PE D  S+  + + Y  +  ++   ++ + M    VK +           +
Sbjct: 303 VARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACA 362

Query: 488 HI--FYAGE------TSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEK 535
           H+     GE        + +K+++F     +D   K  G V    S+  +M Q++K
Sbjct: 363 HLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFK-CGDVDKAESIFREMSQRDK 417



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 32/218 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C++ +   T K +H+ +    +     L N +ID Y  C  +  A  +   M  RD 
Sbjct: 226 LSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDI 285

Query: 70  VSWASILT-------------------------------AYNQANLPQKTISIFSTMLAL 98
           +SW +I++                                Y ++N  ++ + +F  M A 
Sbjct: 286 ISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQAT 345

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           + ++PD F   S++ AC  LGA  LG+ +      +   +D  V+++L+DMY KCG  + 
Sbjct: 346 N-VKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDK 404

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           A ++F  +  ++  +WTAM+   A +G  + A+++F  
Sbjct: 405 AESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSN 442



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 85/181 (46%), Gaps = 9/181 (4%)

Query: 238 PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA--KCSDIIAAKDI 295
           PL+  S++  C +   L+   Q+H   I  G  +   + N ++      +  D   A+ +
Sbjct: 20  PLI--SLLETCESMDQLQ---QVHCQAIKKGLNANPVLQNRVMTFCCTHEYGDFQYARRL 74

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
           F  +   ++  W ++I G ++    +  ++LY EM+  GVKP+  TF  L    +    +
Sbjct: 75  FDEIPEPNLFIWNTMIRGYSRLDFPQLGVSLYLEMLRRGVKPDRYTFPFLFKGFTRDIAL 134

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
             GR+L   +++ +G+  ++  +T L+ +    G LD A  +    P + D  TW  ++S
Sbjct: 135 EYGRQLHGHVLK-HGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCP-KADVITWNMIIS 192

Query: 416 A 416
           A
Sbjct: 193 A 193


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/605 (36%), Positives = 346/605 (57%), Gaps = 33/605 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           +L  L  C+  +     K +HAQ +  GL     +   LI  Y  C  ++ A  + ++M 
Sbjct: 266 FLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMK 325

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            RD VSW  ++  Y + +  +    +F+TM   + +QPD   +  ++ AC S     L +
Sbjct: 326 VRDVVSWTVMIRGYAENSNIEDAFGLFATMQE-EGIQPDRITYIHIINACASSADLSLAR 384

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++H+  V + F  D +V ++LV MYAKCG   +AR VFD++  ++ VSW+AM+ AY  +G
Sbjct: 385 EIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENG 444

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             ++A E F                  +  RN ++                D +   +++
Sbjct: 445 CGEEAFETFH-----------------LMKRNNVEP---------------DVVTYINLL 472

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            AC +   L+LG +I+   I     S + + NA+++M  K   I  A+ IF  M ++DVV
Sbjct: 473 NACGHLGALDLGMEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVV 532

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +W  +I G + HG A E L L+D M+    +PN VTFVG++ ACS  G V +GR+ F  +
Sbjct: 533 TWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYL 592

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
           ++  GI P+++ Y C++DLL R+G LDEAE LI  MP +P+   W+ LL+AC+ + N ++
Sbjct: 593 LDGRGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDV 652

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
             R A   L  +P D + Y+ LS++YA+A MW++V+KVRK+M    V+KE G ++IE   
Sbjct: 653 AERAAERCLMSEPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEG 712

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H F   + SHP   EI+  L  L   +KR GY+P T +VLH++ ++EKE  + +HSE+
Sbjct: 713 KLHTFVVEDRSHPQAGEIYAELARLMTAIKREGYIPVTQNVLHNVGEQEKEEAISYHSEK 772

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+AYG+L    G  +R+ KNLRVCGDCH   K IS++T REI+ RDA+R+HHFK+G CS
Sbjct: 773 LAIAYGVLSLPSGAPIRIFKNLRVCGDCHSASKFISKVTGREIIARDASRFHHFKNGVCS 832

Query: 606 CNDFW 610
           C D+W
Sbjct: 833 CGDYW 837



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/453 (27%), Positives = 206/453 (45%), Gaps = 66/453 (14%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K  HAQ+IK+G      +   L+  Y K   +  A  + + + +RD  ++  ++  Y ++
Sbjct: 182 KEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKS 241

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +K   +F  M   +  +P+   F S++  C +  A   GK VHA  + +   DD  V
Sbjct: 242 GDGEKAFQLFYRMQQ-EGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRV 300

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+ MY  CG    AR VFD +K+++ VSWT M+  YA                    
Sbjct: 301 ATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYA-------------------- 340

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                      ++ N  DAF  F  M+ EG+   D +    I+ ACA+ A L L ++IH 
Sbjct: 341 -----------ENSNIEDAFGLFATMQEEGIQ-PDRITYIHIINACASSADLSLAREIHS 388

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            V+  G+ + L +  A+V MYAKC  I  A+ +F  M R+DVVSW+++I    ++G  EE
Sbjct: 389 QVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEE 448

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE----------DYGIT 372
               +  M    V+P+ VT++ L+ AC H+G +  G +++   I+          +  I 
Sbjct: 449 AFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGNALIN 508

Query: 373 PSLQH--------------------YTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPT 409
            +++H                    +  ++   S  G+  EA +L   M    F P+  T
Sbjct: 509 MNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKERFRPNSVT 568

Query: 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           +  +LSAC      E G R  ++LL  +   P+
Sbjct: 569 FVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPT 601



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 176/375 (46%), Gaps = 35/375 (9%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NTLI  +  C  +  A    + +  +  V+W +I+  Y Q    ++  ++F  M+  + +
Sbjct: 100 NTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVD-EAM 158

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +P    F  ++ AC S    +LGK+ HA  +   F  D  + ++LV MY K G  + AR 
Sbjct: 159 EPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQ 218

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VFD +  ++  ++  M+  YA+SG  + A ++F +                         
Sbjct: 219 VFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYR------------------------- 253

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
                 M++EG    + +   SI+  C+    L  GK +H   +  G    + ++ A++ 
Sbjct: 254 ------MQQEGFK-PNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIR 306

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY  C  I  A+ +F +M+ +DVVSWT +I G A++   E+   L+  M   G++P+ +T
Sbjct: 307 MYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRIT 366

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           ++ +I AC+    +   R++   ++   G    L   T L+ + ++ G + +A  +  AM
Sbjct: 367 YIHIINACASSADLSLAREIHSQVVR-AGFGTDLLVDTALVHMYAKCGAIKDARQVFDAM 425

Query: 402 PFEPDEPTWAALLSA 416
               D  +W+A++ A
Sbjct: 426 S-RRDVVSWSAMIGA 439



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 158/356 (44%), Gaps = 41/356 (11%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D   +  L + C  L    LGKQV    + S    +    ++L+ +++ CG    AR  F
Sbjct: 60  DSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTF 119

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           DS++ K  V+                               W A+++G  Q  +  +AF 
Sbjct: 120 DSVENKTVVT-------------------------------WNAIIAGYAQLGHVKEAFA 148

Query: 224 SFIEMRREGVDIVDPLVLSSIV--GACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
            F +M  E ++   P +++ ++   AC++ A L+LGK+ H  VI +G+ S   I  A+V 
Sbjct: 149 LFRQMVDEAME---PSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALVS 205

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY K   +  A+ +F  + ++DV ++  +I G A+ G  E+   L+  M   G KPN ++
Sbjct: 206 MYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRIS 265

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+ ++  CS    +  G+ +    + + G+   ++  T L+ +    G ++ A  +   M
Sbjct: 266 FLSILDGCSTPEALAWGKAVHAQCM-NTGLVDDVRVATALIRMYMGCGSIEGARRVFDKM 324

Query: 402 PFEPDEPTWAALLSACKHHRNTE--MGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
               D  +W  ++     + N E   G         ++P D  +YI + N  AS+A
Sbjct: 325 KVR-DVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQP-DRITYIHIINACASSA 378



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 92/186 (49%), Gaps = 2/186 (1%)

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290
           EG + +D      +   C       LGKQ+   +I  G +  ++  N ++ +++ C +++
Sbjct: 54  EGSNHIDSRTYVKLFQRCMMLRDAGLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNML 113

Query: 291 AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350
            A+  F  +  K VV+W +II G AQ G  +E  AL+ +MV   ++P+ +TF+ ++ ACS
Sbjct: 114 EARQTFDSVENKTVVTWNAIIAGYAQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACS 173

Query: 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTW 410
               +  G++ F + +   G     +  T L+ +  + G +D A  +   + ++ D  T+
Sbjct: 174 SPAGLKLGKE-FHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQVFDGL-YKRDVSTF 231

Query: 411 AALLSA 416
             ++  
Sbjct: 232 NVMIGG 237


>gi|449491161|ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 213/589 (36%), Positives = 350/589 (59%), Gaps = 4/589 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNT-LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           + LH  ++K GL QY    +T L+  Y  C  +  A  + +  P+ D ++W  I++AYN+
Sbjct: 159 RQLHGHVLKHGL-QYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNK 217

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
               +++  +F  M    ++ P       ++ AC  L   R GK+VH+         + V
Sbjct: 218 VGKFEESRRLFLVM-EDKQVLPTTVTLVLVLSACSKLKDLRTGKKVHSYVKNCKVESNLV 276

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           ++++++DMYA CG  ++A  +F S+  ++ +SWT ++S +   G    A   F++ P ++
Sbjct: 277 LENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTNLGEIDVARNYFDKMPEKD 336

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
              WTA++ G ++S    +A   F  M+   V   D   + S++ ACA+   LELG+ I 
Sbjct: 337 YVSWTAMIDGYIRSNRFKEALELFRNMQATNVK-PDEFTMVSVLTACAHLGALELGEWIR 395

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             +     ++ LF+ NA++DMY KC D+  A+ IF  M ++D  +WT++IVG A +G  E
Sbjct: 396 TYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMSQRDKFTWTAMIVGLAVNGHGE 455

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           + L ++  M+ A + P+E+T++G++ AC+H GLV KGRK F  M   +GI P++ HY CL
Sbjct: 456 KALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHGIEPNIAHYGCL 515

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL+R+G L EA  +I+ MP + +   W ALL+ C+ +R ++M   V   +L L+P++ 
Sbjct: 516 VDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVVKQILELEPDNG 575

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
           + Y+LL N+YA+   W  + ++R++M    +KK PG S IE     H F AG+ SHP   
Sbjct: 576 AVYVLLCNIYAACKRWNDLRELRQMMMDKGIKKXPGCSLIEMNGRVHEFVAGDRSHPQTK 635

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            I   L ++  ++K  GY PD S V  D+ +++KE  +F HSE+LA+A+GL+ S PG  +
Sbjct: 636 NIDAKLDKMTQDLKLAGYSPDISEVFLDIAEEDKENSVFRHSEKLAIAFGLINSPPGVTI 695

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+ KNLR+C DCH + K++S++  RE++VRD TR+HHFK G CSC D+W
Sbjct: 696 RITKNLRMCMDCHNMAKLVSKVYNREVIVRDRTRFHHFKHGLCSCKDYW 744



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 116/429 (27%), Positives = 201/429 (46%), Gaps = 74/429 (17%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLID-----AYGKCDLVQYAHHLLEEMPQRDHVSWASIL 76
           ++ +H Q IK GL+    L N ++       YG     QYA  L +E+P+ +   W +++
Sbjct: 55  LQQVHCQAIKKGLNANPVLQNRVMTFCCTHEYGD---FQYARRLFDEIPEPNLFIWNTMI 111

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
             Y++ + PQ  +S++  ML    ++PD + F  L K      A   G+Q+H   +    
Sbjct: 112 RGYSRLDFPQLGVSLYLEMLR-RGVKPDRYTFPFLFKGFTRDIALEYGRQLHGHVLKHGL 170

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             +  V ++LV MY  CG  + AR VFD     + ++W  ++SAY + G+       FE+
Sbjct: 171 QYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGK-------FEE 223

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
           +  R LFL       +++ +  +    + +            LVLS    AC+    L  
Sbjct: 224 S--RRLFL-------VMEDKQVLPTTVTLV------------LVLS----ACSKLKDLRT 258

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           GK++H  V     ES L + NA++DMYA C ++ +A  IF  M  +D++SWT+I+ G   
Sbjct: 259 GKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDIISWTTIVSGFTN 318

Query: 317 HGQAE-------------------------------ETLALYDEMVSAGVKPNEVTFVGL 345
            G+ +                               E L L+  M +  VKP+E T V +
Sbjct: 319 LGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSV 378

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP 405
           + AC+H+G +  G +  ++ I+   I   L     L+D+  + G +D+AE++ + M  + 
Sbjct: 379 LTACAHLGALELG-EWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDKAESIFREMS-QR 436

Query: 406 DEPTWAALL 414
           D+ TW A++
Sbjct: 437 DKFTWTAMI 445



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 192/461 (41%), Gaps = 51/461 (11%)

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P++  +I +T  AL    P      SL++ C S+      +QVH             +K 
Sbjct: 19  PKQMTTIAATSSALKSFSPPTHPLISLLETCESMDQL---QQVHC----------QAIKK 65

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
            L           NA  V     L+N V        Y   G  + A  +F++ P  NLF+
Sbjct: 66  GL-----------NANPV-----LQNRVMTFCCTHEY---GDFQYARRLFDEIPEPNLFI 106

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W  ++ G  +          ++EM R GV   D      +         LE G+Q+HG V
Sbjct: 107 WNTMIRGYSRLDFPQLGVSLYLEMLRRGVK-PDRYTFPFLFKGFTRDIALEYGRQLHGHV 165

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           +  G +  +F+  A+V MY  C  +  A+ +F    + DV++W  II    + G+ EE+ 
Sbjct: 166 LKHGLQYNVFVHTALVQMYLLCGQLDTARGVFDVCPKADVITWNMIISAYNKVGKFEESR 225

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            L+  M    V P  VT V ++ ACS +  +  G+K+  S +++  +  +L     ++D+
Sbjct: 226 RLFLVMEDKQVLPTTVTLVLVLSACSKLKDLRTGKKV-HSYVKNCKVESNLVLENAMIDM 284

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG-TRVANHLLSLKPE-DPS 442
            +  G +D A  + ++M    D  +W  ++S       T +G   VA +     PE D  
Sbjct: 285 YADCGEMDSALGIFRSMN-NRDIISWTTIVSGF-----TNLGEIDVARNYFDKMPEKDYV 338

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI--FYAGE------ 494
           S+  + + Y  +  ++   ++ + M    VK +           +H+     GE      
Sbjct: 339 SWTAMIDGYIRSNRFKEALELFRNMQATNVKPDEFTMVSVLTACAHLGALELGEWIRTYI 398

Query: 495 TSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEK 535
             + +K+++F     +D   K  G V    S+  +M Q++K
Sbjct: 399 DRNKIKNDLFVRNALIDMYFK-CGDVDKAESIFREMSQRDK 438



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 99/218 (45%), Gaps = 32/218 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C++ +   T K +H+ +    +     L N +ID Y  C  +  A  +   M  RD 
Sbjct: 247 LSACSKLKDLRTGKKVHSYVKNCKVESNLVLENAMIDMYADCGEMDSALGIFRSMNNRDI 306

Query: 70  VSWASILT-------------------------------AYNQANLPQKTISIFSTMLAL 98
           +SW +I++                                Y ++N  ++ + +F  M A 
Sbjct: 307 ISWTTIVSGFTNLGEIDVARNYFDKMPEKDYVSWTAMIDGYIRSNRFKEALELFRNMQAT 366

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           + ++PD F   S++ AC  LGA  LG+ +      +   +D  V+++L+DMY KCG  + 
Sbjct: 367 N-VKPDEFTMVSVLTACAHLGALELGEWIRTYIDRNKIKNDLFVRNALIDMYFKCGDVDK 425

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           A ++F  +  ++  +WTAM+   A +G  + A+++F  
Sbjct: 426 AESIFREMSQRDKFTWTAMIVGLAVNGHGEKALDMFSN 463


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/605 (38%), Positives = 353/605 (58%), Gaps = 41/605 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C   ++    K +H    K    +   +   LID Y K   V  A  + EEMP+ D 
Sbjct: 253 LKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDV 312

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           + W+ ++  Y Q+   ++ I +F  M     + P+ F  ASL++AC SL   +LG Q+H 
Sbjct: 313 IPWSFMIARYAQSEQSEEAIEMFCRMRR-GLVLPNQFTLASLLQACASLVDLQLGNQIH- 370

Query: 130 CFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           C V+    D +V V ++L+DMYAKC                               GR +
Sbjct: 371 CHVVKVGLDMNVFVSNALMDMYAKC-------------------------------GRME 399

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA---FYSFIEMRREGVDIVDPLVLSSIV 245
           +++++F ++P      W  ++ G VQ+ N   A   F   +E + +G ++      SS++
Sbjct: 400 NSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVT----YSSVL 455

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            ACA  A LE G QIH L +   Y+    + NA++DMYAKC +I  A+ +F  +R  D V
Sbjct: 456 RACAGIAALEPGSQIHSLSVKTIYDKNTVVGNALIDMYAKCGNIKDARLVFDMLREHDQV 515

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SW ++I G + HG   E L  ++ M+    KP++VTFVG++ ACS+ GL+ +G+  FKSM
Sbjct: 516 SWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTFVGILSACSNAGLLDRGQAYFKSM 575

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
           +E+Y I P  +HYTC++ LL RSGHLD+A  L+  +PFEP    W ALLSAC  H + E+
Sbjct: 576 VEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIPFEPSVMVWRALLSACVIHNDVEL 635

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G   A  +L ++PED ++++LLSN+YA+A  W +V+ +R  M    ++KEPG S+IE   
Sbjct: 636 GRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVASIRTSMKRKGIRKEPGLSWIENQG 695

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H F  G+TSHP    I  +L  L+ + +  GYVPD SSVL D+E  +KE++L+ HSER
Sbjct: 696 RVHYFSVGDTSHPDTKLINGMLEWLNMKARNEGYVPDFSSVLLDVEDVDKEQRLWVHSER 755

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+AYGL+++   + LR++KNLR+C DCH  +K+IS+I +R+I++RD  R+HHF +G CS
Sbjct: 756 LALAYGLIRTPSISPLRIIKNLRICADCHAAIKLISKIVQRDIIIRDMNRFHHFHEGICS 815

Query: 606 CNDFW 610
           C D+W
Sbjct: 816 CGDYW 820



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 205/401 (51%), Gaps = 43/401 (10%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           ++HA + KLG      +   LID Y  C   + A  + + +  +D VSW  ++  Y +  
Sbjct: 166 SVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENE 225

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
             ++++ +FS M  +   +P++F FAS++KAC  L    +GK VH C   + + ++  V 
Sbjct: 226 CFEESLKLFSRMRIVG-FKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVG 284

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
             L+D+Y K G  ++A  VF+ +   + + W+ M++ YA+S + ++A+E+          
Sbjct: 285 VELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEM---------- 334

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
                                F  MRR G+ + +   L+S++ ACA+   L+LG QIH  
Sbjct: 335 ---------------------FCRMRR-GLVLPNQFTLASLLQACASLVDLQLGNQIHCH 372

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           V+ +G +  +F+SNA++DMYAKC  +  +  +F        VSW ++IVG  Q G  E+ 
Sbjct: 373 VVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKA 432

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL----FKSMIEDYGITPSLQHYT 379
           L L+ +M+   V+  EVT+  ++ AC+ +  +  G ++     K++ +   +  +     
Sbjct: 433 LILFKDMLECQVQGTEVTYSSVLRACAGIAALEPGSQIHSLSVKTIYDKNTVVGN----- 487

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            L+D+ ++ G++ +A  L+  M  E D+ +W A++S    H
Sbjct: 488 ALIDMYAKCGNIKDAR-LVFDMLREHDQVSWNAMISGYSVH 527



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 182/398 (45%), Gaps = 36/398 (9%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   L+ C R+    T K LH +IIK G        N L++ Y K D +  A  L +EMP
Sbjct: 47  YGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMP 106

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALD-KLQPDHFVFASLVKACGSLGATRLG 124
            R+ VS+ +++  Y+Q     + I +FS +     +L P  FVF++++K   S    +LG
Sbjct: 107 DRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNP--FVFSTVLKLLVSAEWAKLG 164

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
             VHAC     F  D  V ++L+D Y+ CG    AR                        
Sbjct: 165 FSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECAR------------------------ 200

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
                  ++F+    +++  WT +V+  V++    ++   F  MR  G    +    +S+
Sbjct: 201 -------QVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFK-PNNFTFASV 252

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + AC    V  +GK +HG      Y   LF+   ++D+Y K  D+  A  +F  M + DV
Sbjct: 253 LKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEMPKDDV 312

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           + W+ +I   AQ  Q+EE + ++  M    V PN+ T   L+ AC+ +  +  G ++   
Sbjct: 313 IPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCH 372

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
           +++  G+  ++     L+D+ ++ G ++ +  L    P
Sbjct: 373 VVK-VGLDMNVFVSNALMDMYAKCGRMENSLQLFSESP 409



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 177/413 (42%), Gaps = 89/413 (21%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           + +++ SL+++C   G    GK +H   +    C D    + L++ Y K          +
Sbjct: 43  NTYIYGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVK----------Y 92

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           DS+                      DA ++F++ P RN   +  L+ G  Q     +A  
Sbjct: 93  DSLP---------------------DAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIG 131

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            F  ++ EG ++ +P V S+++    +    +LG  +H  V  LG++S  F+  A++D Y
Sbjct: 132 LFSRLQGEGHEL-NPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCY 190

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           + C     A+ +F  +  KD+VSWT ++    ++   EE+L L+  M   G KPN  TF 
Sbjct: 191 SVCGYAECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFA 250

Query: 344 GLIYACSHVGL----VGK---GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
            ++ AC  VGL    VGK   G     S +E+  +         L+DL  +SG +D+A  
Sbjct: 251 SVLKAC--VGLEVFNVGKAVHGCAFKTSYLEELFVGVE------LIDLYIKSGDVDDALQ 302

Query: 397 LIKAMPFE----------------------------------PDEPTWAALLSACKHHRN 422
           + + MP +                                  P++ T A+LL AC    +
Sbjct: 303 VFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVD 362

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKE 475
            ++G ++  H++ +         L  NV+ S A+    +K  ++ + +++  E
Sbjct: 363 LQLGNQIHCHVVKVG--------LDMNVFVSNALMDMYAKCGRMENSLQLFSE 407


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 239/651 (36%), Positives = 356/651 (54%), Gaps = 80/651 (12%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA  +    +K +H+  I+ G      + N LID Y KC  +  A  +   M  +D 
Sbjct: 266 LPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDV 325

Query: 70  VSWASILTAYNQA----------------NLP-------------------QKTISIFST 94
           VSW +++T Y Q+                N+P                   Q+ +  F  
Sbjct: 326 VSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQ 385

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA-----CFV-------LSPFCDDDVV 142
           M+ LD  +P+     SL+ AC SLGA   G ++HA     C +            +D +V
Sbjct: 386 MI-LDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMV 444

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+DMY+KC     AR++FDSI  +                              RN+
Sbjct: 445 YNALIDMYSKCRSFKAARSIFDSIPRRE-----------------------------RNV 475

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIH 261
             WT ++ G  Q  +  DA   F EM  +   +  +   +S I+ ACA+ A L +GKQIH
Sbjct: 476 VTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIH 535

Query: 262 GLVIAL-GYE-SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
             V     YE S  F++N ++DMY+KC D+  A+++F  M +++ VSWTS++ G   HG+
Sbjct: 536 AYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGR 595

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
            +E L ++D+M  AG  P++++F+ L+YACSH G+V +G   F  M  DY +  S +HY 
Sbjct: 596 GKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVDQGLNYFDIMRRDYDVVASAEHYA 655

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++DLL+R G LD+A   I+ MP EP    W ALLSAC+ H N E+     N L+++K E
Sbjct: 656 CVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEYALNKLVNMKAE 715

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           +  SY L+SN+YA+A  W+ V+++R+LM    +KK PG S+++  KG+  F+ G+ SHPL
Sbjct: 716 NDGSYTLISNIYANARRWKDVARIRQLMKKSGIKKRPGCSWVQGKKGTASFFVGDRSHPL 775

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
             EI+ LL  L   +K  GYVP+T+  LHD++ +EK   L  HSE+LA+AYGLL + PG 
Sbjct: 776 SPEIYSLLERLIGRIKVMGYVPETNFALHDVDDEEKNNLLSEHSEKLALAYGLLTTSPGC 835

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +R+ KNLRVCGDCH     IS+I   EI+VRD++R+HHFK+G CSC  +W
Sbjct: 836 PIRITKNLRVCGDCHSAFTYISKIVDHEIIVRDSSRFHHFKNGSCSCGGYW 886



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 139/631 (22%), Positives = 254/631 (40%), Gaps = 150/631 (23%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQY---------GPLPN-----------T 43
           +H+   L+ C   +   TV+ +H +II  GL  Y          PLP+            
Sbjct: 32  THFASLLKEC---RSVNTVRQIHQKIIACGLLSYPSSLLSVPLAPLPSHSYVSPKSLGTG 88

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           ++ +Y  C   + A  +LE +     V W  ++  + +     + I +   ML     +P
Sbjct: 89  VVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGT-KP 147

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           DHF     +KACG L +   G+ +H     + F  +  V ++LV MY++CG   +A  VF
Sbjct: 148 DHFTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVF 207

Query: 164 DSIKLK---NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
           D I  K   + +SW ++++A+ +    + A+E+F +                        
Sbjct: 208 DEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSE------------------------ 243

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
              S I   +   +  D + + +I+ ACA+   L   K+IH   I  G  +  F+ NA++
Sbjct: 244 --MSMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALI 301

Query: 281 DMYAKCS---------------DII----------------AAKDIFGRMRRK----DVV 305
           D YAKC                D++                AA ++F  MR++    DV+
Sbjct: 302 DTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVI 361

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +W+++I G AQ G ++E L  + +M+  G +PN VT + L+ AC+ +G + +G ++    
Sbjct: 362 TWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYS 421

Query: 366 IEDYGIT-----------PSLQHYTCLLDLLSRSGHLDEAENLIKAMP------------ 402
           ++   ++             L  Y  L+D+ S+      A ++  ++P            
Sbjct: 422 LKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVM 481

Query: 403 --------------------------FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
                                       P+  T + +L AC H     MG ++  ++   
Sbjct: 482 IGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRH 541

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETS 496
              +PS Y + + +    +    V   R +   M  + E  ++ +  G G H    G   
Sbjct: 542 HEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMH----GRGK 597

Query: 497 HPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
             L  +IF+       +M++ G+VPD  S L
Sbjct: 598 EAL--DIFD-------KMQKAGFVPDDISFL 619


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 238/606 (39%), Positives = 343/606 (56%), Gaps = 42/606 (6%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL---VQYAHHLLEEMPQRDH 69
           CA  +     K LH+  I+ GL     +  +L+D Y KC     V     + + M     
Sbjct: 279 CAELENLSLGKQLHSWAIRSGL--VDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSV 336

Query: 70  VSWASILTAY-NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
           +SW +++T Y    NL  + I++FS M+    ++P+HF F+S  KACG+L   R+GKQV 
Sbjct: 337 MSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQV- 395

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
                             +    K GL +N+        + NSV     +S + +S R +
Sbjct: 396 ------------------LGQAFKRGLASNS-------SVANSV-----ISMFVKSDRME 425

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           DA   FE    +NL  +   + G  ++ N   AF    E+    +  V     +S++   
Sbjct: 426 DAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELG-VSAFTFASLLSGV 484

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           AN   +  G+QIH  V+ LG      + NA++ MY+KC  I  A  +F  M  ++V+SWT
Sbjct: 485 ANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWT 544

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           S+I G A+HG A   L  +++M+  GVKPNEVT+V ++ ACSHVGLV +G + F SM ED
Sbjct: 545 SMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYED 604

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           + I P ++HY C++DLL R+G L +A   I  MPF+ D   W   L AC+ H NTE+G  
Sbjct: 605 HKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKL 664

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            A  +L L P +P++YI LSN+YA A  W+  +++R+ M    + KE G S+IE G   H
Sbjct: 665 AARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIH 724

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDM----EQKEKERQLFWHSE 544
            FY G+T+HP   +I++ L  L  E+KR GYVPDT  VLH +    ++ EKER L+ HSE
Sbjct: 725 KFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSE 784

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           ++AVA+GL+ +     +RV KNLRVCGDCH  MK IS ++ REIV+RD  R+HHFKDGKC
Sbjct: 785 KIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKC 844

Query: 605 SCNDFW 610
           SCND+W
Sbjct: 845 SCNDYW 850



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 107/434 (24%), Positives = 193/434 (44%), Gaps = 47/434 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM---PQ 66
           L+ C R +     K +HA++I+  +     L N+LI  Y K      A  + E M    +
Sbjct: 69  LKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGK 128

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           RD VSW++++  Y         I +F   L L  L P+ + + ++++AC +     +G+ 
Sbjct: 129 RDVVSWSAMMACYGNNGRELDAIKVFVEFLELG-LVPNDYCYTAVIRACSNSDFVGVGRV 187

Query: 127 VHACFVLSPFCDDDV-VKSSLVDMYAKC-GLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
                + +   + DV V  SL+DM+ K      NA  VFD +   N V+WT M++   + 
Sbjct: 188 TLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQM 247

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G  ++A+                                 F++M   G +  D   LSS+
Sbjct: 248 GFPREAIRF-------------------------------FLDMVLSGFE-SDKFTLSSV 275

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS---DIIAAKDIFGRMRR 301
             ACA    L LGKQ+H   I  G      +  ++VDMYAKCS    +   + +F RM  
Sbjct: 276 FSACAELENLSLGKQLHSWAIRSGLVD--DVECSLVDMYAKCSADGSVDDCRKVFDRMED 333

Query: 302 KDVVSWTSIIVGTAQHGQ-AEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGR 359
             V+SWT++I G  ++   A E + L+ EM++ G V+PN  TF     AC ++     G+
Sbjct: 334 HSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGK 393

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           ++     +  G+  +      ++ +  +S  +++A+   +++  E +  ++   L     
Sbjct: 394 QVLGQAFK-RGLASNSSVANSVISMFVKSDRMEDAQRAFESLS-EKNLVSYNTFLDGTCR 451

Query: 420 HRNTEMGTRVANHL 433
           + N E   ++ + +
Sbjct: 452 NLNFEQAFKLLSEI 465



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 159/343 (46%), Gaps = 41/343 (11%)

Query: 95  MLALDKLQP-DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC 153
           ++A D ++P D   F+SL+K+C      RLGK VHA  +      D V+ +SL+ +Y+K 
Sbjct: 51  LMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKS 110

Query: 154 GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLV 213
           G                             S + +D  E   +   R++  W+A+++   
Sbjct: 111 G----------------------------DSAKAEDVFETMRRFGKRDVVSWSAMMACYG 142

Query: 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG-YESC 272
            +  E+DA   F+E    G+ + +    ++++ AC+N   + +G+   G ++  G +ES 
Sbjct: 143 NNGRELDAIKVFVEFLELGL-VPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESD 201

Query: 273 LFISNAIVDMYAKCSDIIA-AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
           + +  +++DM+ K  +    A  +F +M   +VV+WT +I    Q G   E +  + +MV
Sbjct: 202 VCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMV 261

Query: 332 SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR---S 388
            +G + ++ T   +  AC+ +  +  G++L    I   G+   ++    L+D+ ++    
Sbjct: 262 LSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRS-GLVDDVE--CSLVDMYAKCSAD 318

Query: 389 GHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
           G +D+   +   M  +    +W AL++   + +N  + T   N
Sbjct: 319 GSVDDCRKVFDRME-DHSVMSWTALITG--YMKNCNLATEAIN 358



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/287 (24%), Positives = 123/287 (42%), Gaps = 49/287 (17%)

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M R+G+  +D +  SS++ +C       LGK +H  +I    E    + N+++ +Y+K  
Sbjct: 52  MARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSG 111

Query: 288 DIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVG 344
           D   A+D+F  MRR   +DVVSW++++     +G+  + + ++ E +  G+ PN+  +  
Sbjct: 112 DSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTA 171

Query: 345 LIYACSHVGLVGKGR-------------------------------------KLFKSMIE 367
           +I ACS+   VG GR                                     K+F  M E
Sbjct: 172 VIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSE 231

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTE 424
              +T +L    C+     + G   EA      M    FE D+ T +++ SAC    N  
Sbjct: 232 LNVVTWTLMITRCM-----QMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLS 286

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
           +G ++ +  +     D     L+ ++YA  +    V   RK+   ME
Sbjct: 287 LGKQLHSWAIRSGLVDDVECSLV-DMYAKCSADGSVDDCRKVFDRME 332


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 211/566 (37%), Positives = 336/566 (59%), Gaps = 2/566 (0%)

Query: 45  IDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPD 104
           +D      L+ YA  +  ++   +   + +++  ++ +  P +    F        L PD
Sbjct: 60  VDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRGHSGSKNPDQAFH-FYVQSQRQGLLPD 118

Query: 105 HFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFD 164
           +  F  LVK+C  L    +G Q H   +   F  D  V++SLV MYA  G    A  +F 
Sbjct: 119 NLTFPFLVKSCTKLHCISMGSQAHGHIIKHGFEKDVYVQNSLVHMYATFGDTEAATLIFQ 178

Query: 165 SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS 224
            +   + VSWT+M+  + + G  + A ++F+Q P +NL  W+ ++SG  Q+ +   A   
Sbjct: 179 RMYYVDVVSWTSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVEL 238

Query: 225 FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284
           F  ++ +GV   +  V+ S++ +CA+   LELG++ H  V+  G    L +  A+VDMYA
Sbjct: 239 FKVLQSQGVR-ANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYA 297

Query: 285 KCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVG 344
           +C  I  A  +F  +  +D +SWT++I G A HG +E +L  +  MV AG+ P ++TF  
Sbjct: 298 RCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTA 357

Query: 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE 404
           ++ ACSH GLV +G ++F+SM  D+ + P L+HY C++DLL R+G L+EAE  +  MP +
Sbjct: 358 VLSACSHGGLVERGFQIFESMKRDHRVEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVK 417

Query: 405 PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVR 464
           P+ P W ALL AC+ H+N E+G RV   L+ L P+    Y+LLSN+YA+A  W+ V+++R
Sbjct: 418 PNAPVWGALLGACRIHKNAEIGERVGKILIQLLPQHSGYYVLLSNIYANAKEWEKVTEMR 477

Query: 465 KLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTS 524
           ++M    +KK PG+S IE     H F  G++SHP  D+I  +  E+   ++  GY  +T+
Sbjct: 478 QMMKAKGLKKPPGHSLIELDGRVHKFTIGDSSHPEMDKIERMWEEILMRIRAAGYRGNTA 537

Query: 525 SVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRIT 584
             L D++++EKE  L  HSE+LA+A+G+++S  GT +R+VKNLRVC DCH   K+IS++ 
Sbjct: 538 DALFDIDEEEKESALHRHSEKLAIAFGMMRSEAGTPIRIVKNLRVCEDCHTATKLISKVF 597

Query: 585 KREIVVRDATRYHHFKDGKCSCNDFW 610
            RE++VRD  R+HHF+ G CSC D+W
Sbjct: 598 GRELIVRDRNRFHHFRQGLCSCMDYW 623



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 104/194 (53%), Gaps = 5/194 (2%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
            ++I  + KC  V+ A  L ++MP+++ V+W+++++ Y Q N   K + +F  +L    +
Sbjct: 189 TSMIRGFNKCGDVESARKLFDQMPEKNLVTWSTMISGYAQNNHFDKAVELFK-VLQSQGV 247

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           + +  V  S++ +C  LGA  LG++ H   V +    + ++ ++LVDMYA+CG  + A  
Sbjct: 248 RANETVMVSVISSCAHLGALELGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVW 307

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF----EQAPVRNLFLWTALVSGLVQSRN 217
           VF+ +  ++++SWTA+++  A  G  + +++ F    E         +TA++S       
Sbjct: 308 VFEDLPERDTLSWTALIAGLAMHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGL 367

Query: 218 EIDAFYSFIEMRRE 231
               F  F  M+R+
Sbjct: 368 VERGFQIFESMKRD 381



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 13/162 (8%)

Query: 26  HAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLP 85
           H  ++K G+     L   L+D Y +C  +  A  + E++P+RD +SW +++         
Sbjct: 274 HDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAMHGYS 333

Query: 86  QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS 145
           ++++  F+TM+    L P    F +++ AC   G    G Q     +      D  V+  
Sbjct: 334 ERSLKYFATMVEAG-LTPRDITFTAVLSACSHGGLVERGFQ-----IFESMKRDHRVEPR 387

Query: 146 L------VDMYAKCG-LPNNARAVFDSIKLKNSVSWTAMLSA 180
           L      VD+  + G L    R V       N+  W A+L A
Sbjct: 388 LEHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGA 429


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 218/588 (37%), Positives = 338/588 (57%), Gaps = 33/588 (5%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            + +H  II+ GL     L N LI+ Y +C  +Q A+ +   +  R+ +SW +++  +   
Sbjct: 607  RQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQ 666

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               +K   +F  M   D  +P    F+S++KAC S      GK+V A  + S +  D  V
Sbjct: 667  GEDRKAFELFWQMQN-DGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGV 725

Query: 143  KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
             ++L+                               SAY++SG   DA ++F++ P R++
Sbjct: 726  GNALI-------------------------------SAYSKSGSMTDARKVFDKMPNRDI 754

Query: 203  FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
              W  +++G  Q+     A     +M+ +GV +++     SI+ AC++F+ LE GK++H 
Sbjct: 755  MSWNKMIAGYAQNGLGGTALQFAYQMQEQGV-VLNKFSFVSILNACSSFSALEEGKRVHA 813

Query: 263  LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             ++    +  + +  A++ MYAKC  +  A+++F     K+VV+W ++I   AQHG A +
Sbjct: 814  EIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASK 873

Query: 323  TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
             L  ++ M   G+KP+  TF  ++ AC+H GLV +G ++F S+   +G++P+++HY CL+
Sbjct: 874  ALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLV 933

Query: 383  DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
             LL R+G   EAE LI  MPF PD   W  LL AC+ H N  +    AN+ L L   +P+
Sbjct: 934  GLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAANNALKLNARNPA 993

Query: 443  SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
             Y+LLSNVYA+A  W  V+K+R++M    ++KEPG S+IE     H F A + SHP   E
Sbjct: 994  VYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAE 1053

Query: 503  IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
            I+E L  L  EM+R GY PDT  VLH+++++ +E  L  HSERLA+AYGLLK+ PGT +R
Sbjct: 1054 IYEELKRLSLEMERAGYSPDTQYVLHNLDKEHQETSLCTHSERLAIAYGLLKTPPGTPIR 1113

Query: 563  VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            + KNLR+CGDCH   K IS++  REI+ RD+ R+H FK+GKCSC DFW
Sbjct: 1114 IFKNLRICGDCHTASKFISKLVGREIIARDSNRFHTFKNGKCSCEDFW 1161



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 198/414 (47%), Gaps = 41/414 (9%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP---LPNTLIDAYGKCDLVQYAHHLLE 62
           Y+  ++ C R +     K +HAQ+++ G+   GP   L N LI+ Y KC  V  AH +  
Sbjct: 85  YVDLVQNCTRKRSLAEAKRIHAQMVEAGV---GPDIFLSNLLINMYVKCRSVSDAHQVFL 141

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
           +MP+RD +SW S+++ Y Q    +K   +F  M     + P    + S++ AC S     
Sbjct: 142 KMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFI-PSKITYISILTACCSPAELE 200

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
            GK++H+  + + +  D  V++SL++MY KC    +AR VF  I  ++ VS+  ML  YA
Sbjct: 201 YGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYA 260

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           +    ++ + +F Q                               M  EG+   D +   
Sbjct: 261 QKAYVEECIGLFGQ-------------------------------MSSEGIP-PDKVTYI 288

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           +++ A    ++L+ GK+IH L +  G  S + +  A+  M+ +C D+  AK        +
Sbjct: 289 NLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADR 348

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           DVV + ++I   AQHG  EE    Y +M S GV  N  T++ ++ ACS    +G G +L 
Sbjct: 349 DVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAG-ELI 407

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            S I + G +  +Q    L+ + +R G L  A  L   MP + D  +W A+++ 
Sbjct: 408 HSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMP-KRDLISWNAIIAG 460



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 213/446 (47%), Gaps = 70/446 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H++II+ G  +   + N+L++ YGKC+ +  A  +   + +RD VS+ ++L  Y Q 
Sbjct: 203 KKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQK 262

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ I +F  M + + + PD   + +L+ A  +      GK++H   V      D  V
Sbjct: 263 AYVEECIGLFGQMSS-EGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLNSDIRV 321

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L  M+ +CG    A                            K A+E F     R++
Sbjct: 322 GTALATMFVRCGDVAGA----------------------------KQALEAFAD---RDV 350

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
            ++ AL++ L Q  +  +AF  + +MR +GV +++     S++ AC+    L  G+ IH 
Sbjct: 351 VVYNALIAALAQHGHYEEAFEQYYQMRSDGV-VMNRTTYLSVLNACSTSKALGAGELIHS 409

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +  +G+ S + I N+++ MYA+C D+  A+++F  M ++D++SW +II G A+     E
Sbjct: 410 HISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGE 469

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + LY +M S GVKP  VTF+ L+ AC++      G+ + + ++   GI  +      L+
Sbjct: 470 AMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRS-GIKSNGHLANALM 528

Query: 383 DLLSRSGHLDEAENL----------------------------------IKAMPFEPDEP 408
           ++  R G + EA+N+                                  +K    EPD+ 
Sbjct: 529 NMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKI 588

Query: 409 TWAALLSACKHHRNTEMGTRVANHLL 434
           T+A++L  CK+    E+G ++  H+L
Sbjct: 589 TFASVLVGCKNPEALELGRQI--HML 612



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 205/416 (49%), Gaps = 35/416 (8%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           M  + YL  L  C+  +     + +H+ I ++G      + N+LI  Y +C  +  A  L
Sbjct: 383 MNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRAREL 442

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
              MP+RD +SW +I+  Y +     + + ++  M + + ++P    F  L+ AC +  A
Sbjct: 443 FNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQS-EGVKPGRVTFLHLLSACTNSSA 501

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
              GK +H          +D+++S         G+ +N         L N     A+++ 
Sbjct: 502 YSDGKMIH----------EDILRS---------GIKSNGH-------LAN-----ALMNM 530

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           Y R G   +A  +FE    R++  W ++++G  Q  +   A+  F+EM++EG++  D + 
Sbjct: 531 YRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLE-PDKIT 589

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
            +S++  C N   LELG+QIH L+I  G +  + + NA+++MY +C  +  A ++F  +R
Sbjct: 590 FASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLR 649

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            ++V+SWT++I G A  G+  +   L+ +M + G KP + TF  ++ AC     + +G+K
Sbjct: 650 HRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKK 709

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +   ++ + G          L+   S+SG + +A  +   MP   D  +W  +++ 
Sbjct: 710 VIAHIL-NSGYELDTGVGNALISAYSKSGSMTDARKVFDKMP-NRDIMSWNKMIAG 763



 Score =  138 bits (348), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 105/446 (23%), Positives = 194/446 (43%), Gaps = 66/446 (14%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   +  GL+    +   L   + +C  V  A   LE    RD V + +++ A  Q 
Sbjct: 304 KRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQH 363

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++    +  M + D +  +   + S++ AC +  A   G+ +H+         D  +
Sbjct: 364 GHYEEAFEQYYQMRS-DGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQI 422

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SL+ MYA+C                               G    A E+F   P R+L
Sbjct: 423 GNSLISMYARC-------------------------------GDLPRARELFNTMPKRDL 451

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W A+++G  +  +  +A   + +M+ EGV     +    ++ AC N +    GK IH 
Sbjct: 452 ISWNAIIAGYARREDRGEAMKLYKQMQSEGVK-PGRVTFLHLLSACTNSSAYSDGKMIHE 510

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            ++  G +S   ++NA+++MY +C  I+ A+++F   R +D++SW S+I G AQHG  E 
Sbjct: 511 DILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEA 570

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED-------------- 368
              L+ EM   G++P+++TF  ++  C +   +  GR++   +IE               
Sbjct: 571 AYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNLGNALIN 630

Query: 369 -----------YGITPSLQH-----YTCLLDLLSRSGHLDEAENLIKAMP---FEPDEPT 409
                      Y +  SL+H     +T ++   +  G   +A  L   M    F+P + T
Sbjct: 631 MYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKPVKST 690

Query: 410 WAALLSACKHHRNTEMGTRVANHLLS 435
           ++++L AC      + G +V  H+L+
Sbjct: 691 FSSILKACMSSACLDEGKKVIAHILN 716



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 160/323 (49%), Gaps = 34/323 (10%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           + +   +  LV+ C    +    K++HA  V +    D  + + L++MY KC        
Sbjct: 79  ETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKC-------- 130

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
                    SVS               DA ++F + P R++  W +L+S   Q   +  A
Sbjct: 131 --------RSVS---------------DAHQVFLKMPRRDVISWNSLISCYAQQGFKKKA 167

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
           F  F EM+  G  I   +   SI+ AC + A LE GK+IH  +I  GY+    + N++++
Sbjct: 168 FQLFEEMQTAGF-IPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLN 226

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC D+ +A+ +F  + R+DVVS+ +++   AQ    EE + L+ +M S G+ P++VT
Sbjct: 227 MYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVT 286

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           ++ L+ A +   ++ +G+++ K  + + G+   ++  T L  +  R G +  A+  ++A 
Sbjct: 287 YINLLDAFTTPSMLDEGKRIHKLAVNE-GLNSDIRVGTALATMFVRCGDVAGAKQALEAF 345

Query: 402 PFEPDEPTWAALLSACKHHRNTE 424
             + D   + AL++A   H + E
Sbjct: 346 A-DRDVVVYNALIAALAQHGHYE 367



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 139/337 (41%), Gaps = 51/337 (15%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C         K + A I+  G      + N LI AY K   +  A  + ++MP RD 
Sbjct: 695 LKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDI 754

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW  ++  Y Q  L    +  F+  +    +  + F F S++ AC S  A   GK+VHA
Sbjct: 755 MSWNKMIAGYAQNGLGGTALQ-FAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHA 813

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V      D  V ++L+ MYAKCG    A+ VFD+   KN V+W AM++AYA+ G    
Sbjct: 814 EIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASK 873

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A++ F                                 M +EG+   D    +SI+ AC 
Sbjct: 874 ALDFFNC-------------------------------MDKEGIK-PDGSTFTSILSACN 901

Query: 250 NFAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-R 301
           +  ++  G +I       HGL   + +  CL      V +  +      A+ +  +M   
Sbjct: 902 HSGLVMEGNRIFSSLESQHGLSPTIEHYGCL------VGLLGRAGRFQEAETLINQMPFP 955

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
            D   W +++     HG     +AL +   +  +K N
Sbjct: 956 PDAAVWETLLGACRIHG----NVALAEHAANNALKLN 988



 Score = 92.8 bits (229), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 110/225 (48%), Gaps = 5/225 (2%)

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           +V  C     L   K+IH  ++  G    +F+SN +++MY KC  +  A  +F +M R+D
Sbjct: 88  LVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRD 147

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           V+SW S+I   AQ G  ++   L++EM +AG  P+++T++ ++ AC     +  G+K+  
Sbjct: 148 VISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHS 207

Query: 364 SMIE-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
            +IE  Y   P +Q+   LL++  +   L  A  +   + +  D  ++  +L        
Sbjct: 208 KIIEAGYQRDPRVQN--SLLNMYGKCEDLPSARQVFSGI-YRRDVVSYNTMLGLYAQKAY 264

Query: 423 TEMGTRVANHLLSLK-PEDPSSYILLSNVYASAAMWQHVSKVRKL 466
            E    +   + S   P D  +YI L + + + +M     ++ KL
Sbjct: 265 VEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKL 309


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/649 (36%), Positives = 354/649 (54%), Gaps = 78/649 (12%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C   +     K +H   I+ G      + N LIDAY KC L++ A  +   M  +D 
Sbjct: 127 LPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV 186

Query: 70  VSWASILTAYNQA----------------NLP-------------------QKTISIFST 94
           VSW +++  Y+Q+                N+P                    + +++F  
Sbjct: 187 VSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQ 246

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA-----CFVL--SPFCDDD---VVKS 144
           M+    L P+     S++ AC SLGA   G ++HA     C +   + F  +D   +V +
Sbjct: 247 MIFSGSL-PNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYN 305

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +L+DMY+KC     AR++FD I L+                              RN+  
Sbjct: 306 ALIDMYSKCRSFKAARSIFDDIPLEE-----------------------------RNVVT 336

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIHGL 263
           WT ++ G  Q  +  DA   F+EM  E   +  +   +S I+ ACA+ A + +GKQIH  
Sbjct: 337 WTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAY 396

Query: 264 VIAL-GYES-CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           V+    Y+S   F++N +++MY+KC D+  A+ +F  M +K  +SWTS++ G   HG+  
Sbjct: 397 VLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGS 456

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L ++D+M  AG  P+++TF+ ++YACSH G+V +G   F SM  DYG+TP  +HY   
Sbjct: 457 EALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYA 516

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL+R G LD+A   +K MP EP    W ALLSAC+ H N E+     N L+ +  E+ 
Sbjct: 517 IDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAEND 576

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            SY L+SN+YA+A  W+ V+++R LM    +KK PG S+++  KG+  F+ G+ SHPL  
Sbjct: 577 GSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSP 636

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           +I+ LL  L   +K  GYVP+T+  LHD++++EK   L  HSE+LA+AYGLL + PG  +
Sbjct: 637 QIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPI 696

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+ KNLRVCGDCH     IS+I   EIVVRD +R+HHFK+G CSC  +W
Sbjct: 697 RITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 745



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 223/445 (50%), Gaps = 30/445 (6%)

Query: 8   HRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR 67
           H L+ C            H  I   G      + N L+  Y +C  ++ A  + +E+ QR
Sbjct: 15  HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 74

Query: 68  ---DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP-----DHFVFASLVKACGSLG 119
              D +SW SI++A+ +++     + +FS M  +   +P     D     +++ ACGSL 
Sbjct: 75  GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 134

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
           A    K+VH   + +    D  V ++L+D YAKCGL  NA  VF+ ++ K+ VSW AM++
Sbjct: 135 AVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 194

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFL----WTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
            Y++SG  K A E+F+     N+ L    WTA+++G  Q     +A   F +M   G  +
Sbjct: 195 GYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSG-SL 253

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIAL----------GYESCLFISNAIVDMYAK 285
            + + + S++ ACA+      G +IH   +            G +  L + NA++DMY+K
Sbjct: 254 PNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 313

Query: 286 CSDIIAAKDIFGR--MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA--GVKPNEVT 341
           C    AA+ IF    +  ++VV+WT +I G AQ+G + + L L+ EM+S   GV PN  T
Sbjct: 314 CRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYT 373

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY-TCLLDLLSRSGHLDEAENLIKA 400
              ++ AC+H+  +  G+++   ++  +    S      CL+++ S+ G +D A ++  +
Sbjct: 374 ISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDS 433

Query: 401 MPFEPDEPTWAALLSACK-HHRNTE 424
           M  +    +W ++++    H R +E
Sbjct: 434 MS-QKSAISWTSMMTGYGMHGRGSE 457



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 115/512 (22%), Positives = 209/512 (40%), Gaps = 130/512 (25%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           DHF    ++KACG L + R G   H     + F  +  + ++LV MY++CG    A  +F
Sbjct: 9   DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 68

Query: 164 DSIK---LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
           D I    + + +SW +++SA+ +S     A+++F +                        
Sbjct: 69  DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSK------------------------ 104

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
              + I   +   +  D + + +I+ AC +   +   K++HG  I  G    +F+ NA++
Sbjct: 105 --MTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALI 162

Query: 281 DMYAKCS---------------DII----------------AAKDIFGRMRRK----DVV 305
           D YAKC                D++                AA ++F  MR++    D+V
Sbjct: 163 DAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMV 222

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG------- 358
           +WT++I G +Q G + E L ++ +M+ +G  PN VT + ++ AC+ +G   +G       
Sbjct: 223 TWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYS 282

Query: 359 -RKLFKSMIEDY-GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE------------ 404
            +    ++  D+ G    L  Y  L+D+ S+      A ++   +P E            
Sbjct: 283 LKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIG 342

Query: 405 --------------------------PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
                                     P+  T + +L AC H     +G ++  ++L    
Sbjct: 343 GHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQ 402

Query: 439 EDPSSYIL---LSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGET 495
            D S+Y +   L N+Y+       V   R +   M  K    ++ +  G G H    G  
Sbjct: 403 YDSSAYFVANCLINMYSKCG---DVDTARHVFDSMSQKSAISWTSMMTGYGMH----GRG 455

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
           S  L  +IF+       +M++ G+VPD  + L
Sbjct: 456 SEAL--DIFD-------KMRKAGFVPDDITFL 478



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/204 (25%), Positives = 94/204 (46%), Gaps = 12/204 (5%)

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M R G  + D   L  ++ AC        G   HGL+   G+ES +FI NA+V MY++C 
Sbjct: 1   MLRAGTRL-DHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCG 59

Query: 288 DIIAAKDIFGRMRRK---DVVSWTSIIVGTAQHGQAEETLALYDEMV------SAGVKPN 338
            +  A  IF  + ++   DV+SW SI+    +   A   L L+ +M           + +
Sbjct: 60  SLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSD 119

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
            ++ V ++ AC  +  V + +++  + I + G    +     L+D  ++ G ++ A  + 
Sbjct: 120 IISIVNILPACGSLKAVPQTKEVHGNAIRN-GTFLDVFVGNALIDAYAKCGLMENAVKVF 178

Query: 399 KAMPFEPDEPTWAALLSACKHHRN 422
             M F+ D  +W A+++      N
Sbjct: 179 NMMEFK-DVVSWNAMVAGYSQSGN 201


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/649 (36%), Positives = 354/649 (54%), Gaps = 78/649 (12%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C   +     K +H   I+ G      + N LIDAY KC L++ A  +   M  +D 
Sbjct: 234 LPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDV 293

Query: 70  VSWASILTAYNQA----------------NLP-------------------QKTISIFST 94
           VSW +++  Y+Q+                N+P                    + +++F  
Sbjct: 294 VSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQ 353

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA-----CFVL--SPFCDDD---VVKS 144
           M+    L P+     S++ AC SLGA   G ++HA     C +   + F  +D   +V +
Sbjct: 354 MIFSGSL-PNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYN 412

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +L+DMY+KC     AR++FD I L+                              RN+  
Sbjct: 413 ALIDMYSKCRSFKAARSIFDDIPLEE-----------------------------RNVVT 443

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIHGL 263
           WT ++ G  Q  +  DA   F+EM  E   +  +   +S I+ ACA+ A + +GKQIH  
Sbjct: 444 WTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAY 503

Query: 264 VIAL-GYES-CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           V+    Y+S   F++N +++MY+KC D+  A+ +F  M +K  +SWTS++ G   HG+  
Sbjct: 504 VLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGYGMHGRGS 563

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L ++D+M  AG  P+++TF+ ++YACSH G+V +G   F SM  DYG+TP  +HY   
Sbjct: 564 EALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYA 623

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL+R G LD+A   +K MP EP    W ALLSAC+ H N E+     N L+ +  E+ 
Sbjct: 624 IDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNVELAEHALNKLVEMNAEND 683

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            SY L+SN+YA+A  W+ V+++R LM    +KK PG S+++  KG+  F+ G+ SHPL  
Sbjct: 684 GSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRPGCSWVQGQKGTASFFVGDRSHPLSP 743

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           +I+ LL  L   +K  GYVP+T+  LHD++++EK   L  HSE+LA+AYGLL + PG  +
Sbjct: 744 QIYALLESLIDRIKAMGYVPETNFALHDVDEEEKNNLLVEHSEKLALAYGLLTTFPGCPI 803

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+ KNLRVCGDCH     IS+I   EIVVRD +R+HHFK+G CSC  +W
Sbjct: 804 RITKNLRVCGDCHSAFTYISKIVDHEIVVRDPSRFHHFKNGSCSCGGYW 852



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 127/445 (28%), Positives = 223/445 (50%), Gaps = 30/445 (6%)

Query: 8   HRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR 67
           H L+ C            H  I   G      + N L+  Y +C  ++ A  + +E+ QR
Sbjct: 122 HVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFDEITQR 181

Query: 68  ---DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP-----DHFVFASLVKACGSLG 119
              D +SW SI++A+ +++     + +FS M  +   +P     D     +++ ACGSL 
Sbjct: 182 GIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPACGSLK 241

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
           A    K+VH   + +    D  V ++L+D YAKCGL  NA  VF+ ++ K+ VSW AM++
Sbjct: 242 AVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVA 301

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFL----WTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
            Y++SG  K A E+F+     N+ L    WTA+++G  Q     +A   F +M   G  +
Sbjct: 302 GYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSG-SL 360

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIAL----------GYESCLFISNAIVDMYAK 285
            + + + S++ ACA+      G +IH   +            G +  L + NA++DMY+K
Sbjct: 361 PNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSK 420

Query: 286 CSDIIAAKDIFGR--MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA--GVKPNEVT 341
           C    AA+ IF    +  ++VV+WT +I G AQ+G + + L L+ EM+S   GV PN  T
Sbjct: 421 CRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYT 480

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY-TCLLDLLSRSGHLDEAENLIKA 400
              ++ AC+H+  +  G+++   ++  +    S      CL+++ S+ G +D A ++  +
Sbjct: 481 ISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDS 540

Query: 401 MPFEPDEPTWAALLSA-CKHHRNTE 424
           M  +    +W ++++    H R +E
Sbjct: 541 MS-QKSAISWTSMMTGYGMHGRGSE 564



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 127/576 (22%), Positives = 233/576 (40%), Gaps = 131/576 (22%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   ++ +Y  C    YA  +LE +     V W  ++  + +       I++   ML   
Sbjct: 53  LGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAG 112

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
             + DHF    ++KACG L + R G   H     + F  +  + ++LV MY++CG    A
Sbjct: 113 T-RLDHFTLPHVLKACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEA 171

Query: 160 RAVFDSIK---LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
             +FD I    + + +SW +++SA+ +S     A+++F +                    
Sbjct: 172 SMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSK-------------------- 211

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
                  + I   +   +  D + + +I+ AC +   +   K++HG  I  G    +F+ 
Sbjct: 212 ------MTLIVHEKPTNERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVG 265

Query: 277 NAIVDMYAKCS---------------DII----------------AAKDIFGRMRRK--- 302
           NA++D YAKC                D++                AA ++F  MR++   
Sbjct: 266 NALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIP 325

Query: 303 -DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG--- 358
            D+V+WT++I G +Q G + E L ++ +M+ +G  PN VT + ++ AC+ +G   +G   
Sbjct: 326 LDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEI 385

Query: 359 -----RKLFKSMIEDY-GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE-------- 404
                +    ++  D+ G    L  Y  L+D+ S+      A ++   +P E        
Sbjct: 386 HAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWT 445

Query: 405 ------------------------------PDEPTWAALLSACKHHRNTEMGTRVANHLL 434
                                         P+  T + +L AC H     +G ++  ++L
Sbjct: 446 VMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMACAHLAAIRIGKQIHAYVL 505

Query: 435 SLKPEDPSSYIL---LSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFY 491
                D S+Y +   L N+Y+       V   R +   M  K    ++ +  G G H   
Sbjct: 506 RHHQYDSSAYFVANCLINMYSKCG---DVDTARHVFDSMSQKSAISWTSMMTGYGMH--- 559

Query: 492 AGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
            G  S  L  +IF+       +M++ G+VPD  + L
Sbjct: 560 -GRGSEAL--DIFD-------KMRKAGFVPDDITFL 585


>gi|147805129|emb|CAN64485.1| hypothetical protein VITISV_035038 [Vitis vinifera]
          Length = 1740

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/627 (35%), Positives = 353/627 (56%), Gaps = 40/627 (6%)

Query: 22   VKTLHAQI-IKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
            +K LH++I I   LH    L   L+ AY  C       H+ +E+P+++ V +  ++ +Y 
Sbjct: 1043 LKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYV 1102

Query: 81   QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
              +L    + +F  M A   + PDH+ +  ++KA        +G Q+HA  V      + 
Sbjct: 1103 NNHLYSDALLVFKNM-AGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNV 1161

Query: 141  VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP-- 198
             V + L+ MY KCG    A  V D +  ++ VSW ++++  AR+G+  DA+E+ ++    
Sbjct: 1162 FVGNGLISMYGKCGCLVEACRVLDZMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELL 1221

Query: 199  --------------------------VRNLFL---------WTALVSGLVQSRNEIDAFY 223
                                      V+ +F+         W  +++  + +    +A  
Sbjct: 1222 GLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVD 1281

Query: 224  SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
             F++M    VD  D + ++S++ AC + + L LG++IH  V+    +  L + NA++DMY
Sbjct: 1282 IFLQMEDHAVD-PDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMY 1340

Query: 284  AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
            AKC  +  A+++F +M+ +DVVSWTS+I     +G+  + ++L+  M   G+ P+ + FV
Sbjct: 1341 AKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFV 1400

Query: 344  GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
             ++ ACSH GL+ +GR  FK M E+  I P ++H+ C++DLL R+G +DEA   IK MP 
Sbjct: 1401 SVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPM 1460

Query: 404  EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
            EP+E  W ALLSAC+ + N  +G   A+ L  L PE    Y+LLSN+YA A  W+ V+ V
Sbjct: 1461 EPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTV 1520

Query: 464  RKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDT 523
            R +M    +KK PG S  E     H F AG+ SHP   +I+E L  L  +MK  GYVP+T
Sbjct: 1521 RSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVLVGKMKEAGYVPET 1580

Query: 524  SSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRI 583
             S LHD+E+++KE  L  HSE+LA+A+ +L + PG+ +R+ KNLRVCGDCHI  K+IS+I
Sbjct: 1581 DSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKI 1640

Query: 584  TKREIVVRDATRYHHFKDGKCSCNDFW 610
              REI +RD  R+HHF +G CSC D+W
Sbjct: 1641 VGREITIRDTNRFHHFYNGVCSCGDYW 1667



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 11/177 (6%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L  C      L  + +H  +++  L     L N LID Y KC  ++YA  + ++M  RD 
Sbjct: 1302 LPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDV 1361

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK---- 125
            VSW S+++AY      +  +S+FS M  L  L PD   F S++ AC   G    G+    
Sbjct: 1362 VSWTSMISAYGMNGKGRDAVSLFSRMQDL-GLNPDSIAFVSVLSACSHAGLLDEGRYYFK 1420

Query: 126  -QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
                 C ++ P  +  V    +VD+  + G  + A      + ++ N   W A+LSA
Sbjct: 1421 LMTEECKIV-PRIEHFVC---MVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSA 1473


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 230/602 (38%), Positives = 342/602 (56%), Gaps = 34/602 (5%)

Query: 10   LRVCARHQIALTVKT-LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
            LR C+       + T +HA  +K G+     +  TLID Y K   ++ A  L       D
Sbjct: 1014 LRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQDGFD 1073

Query: 69   HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
              SW +++  Y  +    K + ++  M    + + +    A+  KA G L   + GKQ+ 
Sbjct: 1074 LASWNAMMHGYIVSGDFPKALRLYILMQESGE-RANQITLANAAKAAGGLVGLKQGKQIQ 1132

Query: 129  ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
            A  V   F  D  V S ++DMY KCG   +AR                            
Sbjct: 1133 AVVVKRGFNLDLFVISGVLDMYLKCGEMESAR---------------------------- 1164

Query: 189  DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
                IF + P  +   WT ++SG V++  E  A +++  MR   V   D    +++V AC
Sbjct: 1165 ---RIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQ-PDEYTFATLVKAC 1220

Query: 249  ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
            +    LE G+QIH   + L      F+  ++VDMYAKC +I  A+ +F R     + SW 
Sbjct: 1221 SLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWN 1280

Query: 309  SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            ++IVG AQHG AEE L  ++EM S GV P+ VTF+G++ ACSH GLV +  + F SM + 
Sbjct: 1281 AMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKI 1340

Query: 369  YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
            YGI P ++HY+CL+D LSR+G + EAE +I +MPFE     +  LL+AC+   + E G R
Sbjct: 1341 YGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKR 1400

Query: 429  VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            VA  LL+L+P D ++Y+LLSNVYA+A  W++V+  R +M    VKK+PG+S+++     H
Sbjct: 1401 VAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVH 1460

Query: 489  IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            +F AG+ SH   D I+  +  +   ++  GY+PDT   L D+E+++KE  L++HSE+LA+
Sbjct: 1461 LFVAGDRSHEETDVIYNKVEYIMKRIREEGYLPDTDFALVDVEEEDKECSLYYHSEKLAI 1520

Query: 549  AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
            AYGL+K+ P T LRV+KNLRVCGDCH  +K IS++ +RE+V+RDA R+HHF+ G CSC D
Sbjct: 1521 AYGLMKTPPSTTLRVIKNLRVCGDCHNAIKYISKVFEREVVLRDANRFHHFRSGVCSCGD 1580

Query: 609  FW 610
            +W
Sbjct: 1581 YW 1582



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/404 (27%), Positives = 199/404 (49%), Gaps = 38/404 (9%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            K +H  +++ GL Q   + N LI+ Y K   V  A  +  +M + D VSW ++++    +
Sbjct: 926  KQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALS 985

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT-RLGKQVHACFVLSPFCDDDV 141
             L + ++ +F  +L    L PD F  AS+++AC SLG    L  Q+HAC + +    D  
Sbjct: 986  GLEECSVGMFVDLLR-GGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSF 1044

Query: 142  VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
            V ++L+D+Y+K                               SG+ ++A  +F      +
Sbjct: 1045 VSTTLIDVYSK-------------------------------SGKMEEAEFLFVNQDGFD 1073

Query: 202  LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
            L  W A++ G + S +   A   +I M+  G +  + + L++   A      L+ GKQI 
Sbjct: 1074 LASWNAMMHGYIVSGDFPKALRLYILMQESG-ERANQITLANAAKAAGGLVGLKQGKQIQ 1132

Query: 262  GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             +V+  G+   LF+ + ++DMY KC ++ +A+ IF  +   D V+WT++I G  ++GQ E
Sbjct: 1133 AVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEE 1192

Query: 322  ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-DYGITPSLQHYTC 380
              L  Y  M  + V+P+E TF  L+ ACS +  + +GR++  + ++ +    P +   T 
Sbjct: 1193 HALFTYHHMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVM--TS 1250

Query: 381  LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
            L+D+ ++ G++++A  L K         +W A++     H N E
Sbjct: 1251 LVDMYAKCGNIEDARGLFKRTN-TSRIASWNAMIVGLAQHGNAE 1293



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 197/454 (43%), Gaps = 60/454 (13%)

Query: 15   RHQIALT----VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--RD 68
            RH IA +     K  HA+I+  G H    L N LI  Y KC  +  A  L +  P   RD
Sbjct: 634  RHAIAASDLPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRD 693

Query: 69   HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
             V+W +IL+A+  A+  +    +F  +L    +       A + K C    +    + +H
Sbjct: 694  LVTWNAILSAH--ADKARDGFHLFR-LLRRSFVSATRHTLAPVFKMCLLSASPSAAESLH 750

Query: 129  ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
               V      D  V  +LV++YAK G    AR +FD + L++ V W  M+ AY  +G + 
Sbjct: 751  GYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEY 810

Query: 189  DAMEIFEQ-----------------------------------APVRNLFL--------- 204
            +A+ +F +                                   A    LF+         
Sbjct: 811  EALLLFSEFNRTGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLFMYDDDDDGSD 870

Query: 205  ---WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
               W   +S  +Q     +A   F++M    V   D L    ++   A    LELGKQIH
Sbjct: 871  VIAWNKTLSWFLQRGETWEAVDCFVDMINSRV-ACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 262  GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
            G+V+  G +  + + N +++MY K   +  A+ +F +M   D+VSW ++I G A  G  E
Sbjct: 930  GIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEE 989

Query: 322  ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
             ++ ++ +++  G+ P++ T   ++ ACS +G          +     G+       T L
Sbjct: 990  CSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVVLDSFVSTTL 1049

Query: 382  LDLLSRSGHLDEAENL-IKAMPFEPDEPTWAALL 414
            +D+ S+SG ++EAE L +    F  D  +W A++
Sbjct: 1050 IDVYSKSGKMEEAEFLFVNQDGF--DLASWNAMM 1081



 Score = 44.7 bits (104), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 14/169 (8%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM--RRKDVVSWTSII 311
           L LGK+ H  ++  G+    F++N ++ MY+KC  + +A+ +F       +D+V+W +I+
Sbjct: 642 LPLGKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAIL 701

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
             +A   +A +   L+  +  + V     T   +   C    L+       +S+   Y +
Sbjct: 702 --SAHADKARDGFHLFRLLRRSFVSATRHTLAPVFKMC----LLSASPSAAESL-HGYAV 754

Query: 372 TPSLQH----YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
              LQ        L+++ ++ G + EA  L   M    D   W  ++ A
Sbjct: 755 KIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLR-DVVLWNVMMKA 802


>gi|359490555|ref|XP_003634110.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 678

 Score =  438 bits (1126), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/627 (35%), Positives = 352/627 (56%), Gaps = 40/627 (6%)

Query: 22  VKTLHAQI-IKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           +K LH++I I   LH    L   L+ AY  C       H+ +E+P+++ V +  ++ +Y 
Sbjct: 54  LKKLHSKICIDHDLHSNPSLGIKLMRAYAVCGEPWSTRHIFDEIPKKNVVFFNVMIRSYV 113

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
             +L    + +F  M A   + PDH+ +  ++KA        +G Q+HA  V      + 
Sbjct: 114 NNHLYSDALLVFKNM-AGHGIDPDHYTYPCVLKASSGSEDLWVGMQIHAAVVRVGLDLNV 172

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP-- 198
            V + L+ MY KCG    A  V D +  ++ VSW ++++  AR+G+  DA+E+ ++    
Sbjct: 173 FVGNGLISMYGKCGCLVEACRVLDQMPCRDVVSWNSLVAGCARNGQFDDALEVCKEMELL 232

Query: 199 --------------------------VRNLFL---------WTALVSGLVQSRNEIDAFY 223
                                     V+ +F+         W  +++  + +    +A  
Sbjct: 233 GLKPDAGTMASLLPAVTNTCLDNVSFVKEMFMKLANKSLVSWNVMIAVYMNNSMPAEAVD 292

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            F++M    VD  D + ++S++ AC + + L LG++IH  V+    +  L + NA++DMY
Sbjct: 293 IFLQMEDHAVD-PDAISIASVLPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMY 351

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           AKC  +  A+++F +M+ +DVVSWTS+I     +G+  + ++L+  M   G+ P+ + FV
Sbjct: 352 AKCGCLEYAREVFDQMKFRDVVSWTSMISAYGMNGKGRDAVSLFSRMQDLGLNPDSIAFV 411

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            ++ ACSH GL+ +GR  FK M E+  I P ++H+ C++DLL R+G +DEA   IK MP 
Sbjct: 412 SVLSACSHAGLLDEGRYYFKLMTEECKIVPRIEHFVCMVDLLGRAGQVDEAYGFIKQMPM 471

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
           EP+E  W ALLSAC+ + N  +G   A+ L  L PE    Y+LLSN+YA A  W+ V+ V
Sbjct: 472 EPNERVWGALLSACRVYSNMIIGLLAADQLFQLCPEQSGYYVLLSNIYAKAGRWEDVTTV 531

Query: 464 RKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDT 523
           R +M    +KK PG S  E     H F AG+ SHP   +I+E L     +MK  GYVP+T
Sbjct: 532 RSIMKTKGIKKMPGVSNFELDNRVHTFLAGDQSHPQSKQIYEELDVSVGKMKEAGYVPET 591

Query: 524 SSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRI 583
            S LHD+E+++KE  L  HSE+LA+A+ +L + PG+ +R+ KNLRVCGDCHI  K+IS+I
Sbjct: 592 DSALHDVEEEDKECHLAVHSEKLAIAFAILNTAPGSPIRITKNLRVCGDCHIAAKLISKI 651

Query: 584 TKREIVVRDATRYHHFKDGKCSCNDFW 610
             REI +RD  R+HHF +G CSC D+W
Sbjct: 652 VGREITIRDTNRFHHFYNGVCSCGDYW 678



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 81/177 (45%), Gaps = 11/177 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C      L  + +H  +++  L     L N LID Y KC  ++YA  + ++M  RD 
Sbjct: 313 LPACGDLSALLLGRRIHEYVVRKRLQPNLLLENALIDMYAKCGCLEYAREVFDQMKFRDV 372

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK---- 125
           VSW S+++AY      +  +S+FS M  L  L PD   F S++ AC   G    G+    
Sbjct: 373 VSWTSMISAYGMNGKGRDAVSLFSRMQDL-GLNPDSIAFVSVLSACSHAGLLDEGRYYFK 431

Query: 126 -QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
                C ++ P  +  V    +VD+  + G  + A      + ++ N   W A+LSA
Sbjct: 432 LMTEECKIV-PRIEHFV---CMVDLLGRAGQVDEAYGFIKQMPMEPNERVWGALLSA 484


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 236/608 (38%), Positives = 341/608 (56%), Gaps = 39/608 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--R 67
           L  C+   +    + +H+ I   G      + N ++  YG+C  V+ A  + + M +  R
Sbjct: 167 LSACSSPALVQDGRMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALR 226

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           D VSW  +L+ Y   +  +  I ++  M    +L+PD   + SL+ AC S     LG+ +
Sbjct: 227 DVVSWNIMLSTYVHNDRGKDAIQLYQRM----QLRPDKVTYVSLLSACSSAEDVGLGRVL 282

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           H   V      + +V ++LV MYAKCG    ARAVFD ++ ++ +SWT ++SAY R    
Sbjct: 283 HKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLV 342

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD---IVDPLVLSSI 244
            +A  +F+Q                             +E+ + G       D L   +I
Sbjct: 343 AEACHLFQQ----------------------------MLELEKNGSSQRVKPDALAFVTI 374

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKD 303
           + ACA+ + LE GK +     + G  S   +  A+V++Y KC +I  A+ IF  +  R D
Sbjct: 375 LNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPD 434

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           V  W ++I   AQ GQ+ E L L+  M   GV+P+  +FV ++ ACSH GL  +G+  F 
Sbjct: 435 VQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKSYFT 494

Query: 364 SMIEDY-GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
           SM  +Y  +T ++QH+ C+ DLL R G L EAE  ++ +P +PD   W +LL+AC++HR+
Sbjct: 495 SMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRNHRD 554

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
            +    VAN LL L+P   + Y+ LSN+YA    W  V+KVRK M+   VKKE G S IE
Sbjct: 555 LKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVSTIE 614

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWH 542
            GK  H F  G+ +HP   EI E L +L ++MK  GYVPDT  VLH ++++EKER LF H
Sbjct: 615 IGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLLFSH 674

Query: 543 SERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           SERLA+A GL+ +  GT LRV KNLRVC DCH   K+IS+I  R+IVVRD TR+H FKDG
Sbjct: 675 SERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLFKDG 734

Query: 603 KCSCNDFW 610
           KCSC D+W
Sbjct: 735 KCSCQDYW 742



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 190/401 (47%), Gaps = 47/401 (11%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ-RDHVSWASILTAYNQAN 83
           +H  ++   L     + N L++ Y KC  + +A  +  +M + R+ +SW+ +  A+    
Sbjct: 80  IHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHG 139

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
              + +  F  ML L  ++       +++ AC S    + G+ +H+C  LS F  + +V 
Sbjct: 140 NVWEALRHFRFMLLLG-IKATKSAMVTILSACSSPALVQDGRMIHSCIALSGFESELLVA 198

Query: 144 SSLVDMYAKCGLPNNARAVFDSIK--LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           ++++ MY +CG    AR VFD++   L++ VSW  MLS Y  + R KDA++++++  +R 
Sbjct: 199 NAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRMQLRP 258

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                                              D +   S++ AC++   + LG+ +H
Sbjct: 259 -----------------------------------DKVTYVSLLSACSSAEDVGLGRVLH 283

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             ++    E  + + NA+V MYAKC     A+ +F +M ++ ++SWT+II    +     
Sbjct: 284 KQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVA 343

Query: 322 ETLALYDEMV-------SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
           E   L+ +M+       S  VKP+ + FV ++ AC+ V  + +G K+        G++  
Sbjct: 344 EACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQG-KMVSEQAASCGLSSD 402

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
               T +++L  + G ++EA  +  A+   PD   W A+++
Sbjct: 403 KAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMIA 443



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 189/401 (47%), Gaps = 41/401 (10%)

Query: 48  YGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV 107
           Y  CD    A    + + QR+  SW  ++ A+  +   ++T+     M   D ++PD   
Sbjct: 2   YAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQ-DGVRPDAVT 60

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI- 166
           F + + +CG   + R G ++H   V S    D  V ++L++MY KCG  ++A+ VF  + 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKME 120

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
           + +N +SW+ M  A+A  G   +A+  F        F+   L+ G+  +++         
Sbjct: 121 RTRNVISWSIMAGAHALHGNVWEALRHFR-------FM---LLLGIKATKS--------- 161

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
                         + +I+ AC++ A+++ G+ IH  +   G+ES L ++NA++ MY +C
Sbjct: 162 -------------AMVTILSACSSPALVQDGRMIHSCIALSGFESELLVANAVMTMYGRC 208

Query: 287 SDIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVG 344
             +  A+ +F  M    +DVVSW  ++     + + ++ + LY  M    ++P++VT+V 
Sbjct: 209 GAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQRM---QLRPDKVTYVS 265

Query: 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE 404
           L+ ACS    VG GR L K ++ D  +  ++     L+ + ++ G   EA  +   M  +
Sbjct: 266 LLSACSSAEDVGLGRVLHKQIVNDE-LEKNVIVGNALVSMYAKCGSHTEARAVFDKME-Q 323

Query: 405 PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYI 445
               +W  ++SA    R       +   +L L+    S  +
Sbjct: 324 RSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRV 364



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 140/308 (45%), Gaps = 37/308 (12%)

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           MYA C  P +A+A FD++                            EQ   RNL+ WT L
Sbjct: 1   MYAHCDSPGDAKAAFDAL----------------------------EQ---RNLYSWTGL 29

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
           V+    S    +   +   MR++GV   D +   + +G+C +   L  G +IH +V+   
Sbjct: 30  VAAFAISGQSKETLRALERMRQDGVR-PDAVTFITALGSCGDPESLRDGIRIHQMVVDSR 88

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-KDVVSWTSIIVGTAQHGQAEETLALY 327
            E    +SNA+++MY KC  +  AK +F +M R ++V+SW+ +    A HG   E L  +
Sbjct: 89  LEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHF 148

Query: 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
             M+  G+K  +   V ++ ACS   LV  GR +  S I   G    L     ++ +  R
Sbjct: 149 RFMLLLGIKATKSAMVTILSACSSPALVQDGR-MIHSCIALSGFESELLVANAVMTMYGR 207

Query: 388 SGHLDEAENLIKAMPFE-PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYIL 446
            G ++EA  +  AM     D  +W  +LS   H+   +   ++    + L+P D  +Y+ 
Sbjct: 208 CGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQLYQR-MQLRP-DKVTYVS 265

Query: 447 LSNVYASA 454
           L +  +SA
Sbjct: 266 LLSACSSA 273



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 139/322 (43%), Gaps = 42/322 (13%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  L  C+  +     + LH QI+   L +   + N L+  Y KC     A  + ++M 
Sbjct: 263 YVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKME 322

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDK------LQPDHFVFASLVKACGSLG 119
           QR  +SW +I++AY +  L  +   +F  ML L+K      ++PD   F +++ AC  + 
Sbjct: 323 QRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVS 382

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAML 178
           A   GK V           D  V +++V++Y KCG    AR +FD++  +  V  W AM+
Sbjct: 383 ALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEARRIFDAVCSRPDVQLWNAMI 442

Query: 179 SAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238
           + YA+ G+  +A+++F          W                      M  EGV   D 
Sbjct: 443 AVYAQFGQSHEALKLF----------W---------------------RMEMEGVR-PDS 470

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN--AIVDMYAKCSDIIAAKDIF 296
               SI+ AC++  + + GK     +          I +   + D+  +   +  A++  
Sbjct: 471 FSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFL 530

Query: 297 GRMRRK-DVVSWTSIIVGTAQH 317
            ++  K D V+WTS++     H
Sbjct: 531 EKLPVKPDAVAWTSLLAACRNH 552


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 221/588 (37%), Positives = 344/588 (58%), Gaps = 33/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH+ ++K+ +     +   L+D Y KCDL++ A      +P++D ++W +I++ Y+Q 
Sbjct: 352 RQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQY 411

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + +S+F  M   + +  +    ++++K+   L    + +QVH   V S F  D  V
Sbjct: 412 WEDMEALSLFVEMHK-EGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYV 470

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SL+D Y KC    +A  +F+   + + VS+T+M++AYA+ G+ ++A+++         
Sbjct: 471 VNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKL--------- 521

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                 F+EM+   +   D  V SS++ ACAN +  E GKQ+H 
Sbjct: 522 ----------------------FLEMQDMELK-PDRFVCSSLLNACANLSAFEQGKQLHV 558

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            ++  G+   +F  N++V+MYAKC  I  A   F  +  + +VSW+++I G AQHG   +
Sbjct: 559 HILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQ 618

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L+++M+  GV PN +T V ++ AC+H GLV + +  F+SM E +G  P  +HY C++
Sbjct: 619 ALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMI 678

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G ++EA  L+  MPFE +   W ALL A + H++ E+G R A  L  L+PE   
Sbjct: 679 DLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSG 738

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +++LL+N+YASA  W++V++VR+LM   +VKKEPG S+IE     + F  G+ SH    E
Sbjct: 739 THVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYTFLVGDRSHYRSQE 798

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L EL   M + GYVP     LHD+EQ EKE  L+ HSE+LAVA+GL+ +  G  +R
Sbjct: 799 IYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVAFGLIATPQGAPIR 858

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V KNLRVC DCH   K I +I  REI+VRD  R+HHFKDG CSC D+W
Sbjct: 859 VKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDYW 906



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 124/468 (26%), Positives = 228/468 (48%), Gaps = 47/468 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+  +     K +H  ++  G      + NTL+  Y KCD    +  L +E+P+R+ 
Sbjct: 164 LKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNV 223

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW ++ + Y Q +   + + +F  M+ L  ++P+ F  +S+V AC  L  +  GK +H 
Sbjct: 224 VSWNALFSCYVQXDFCGEAVGLFYEMV-LSGIKPNEFSLSSMVNACTGLRDSSRGKIIHG 282

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA--------- 180
             +   +  D    ++LVDMYAK G   +A +VF+ IK  + VSW A+++          
Sbjct: 283 YLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQ 342

Query: 181 ----------------------------------YARSGRKKDAMEIFEQAPVRNLFLWT 206
                                             Y++    +DA   F   P ++L  W 
Sbjct: 343 ALELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWN 402

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
           A++SG  Q   +++A   F+EM +EG+   +   LS+I+ + A   V+ + +Q+HGL + 
Sbjct: 403 AIISGYSQYWEDMEALSLFVEMHKEGIGF-NQTTLSTILKSTAGLQVVHVCRQVHGLSVK 461

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
            G+ S +++ N+++D Y KCS +  A+ IF      D+VS+TS+I   AQ+GQ EE L L
Sbjct: 462 SGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKL 521

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
           + EM    +KP+      L+ AC+++    +G++L   +++ YG    +     L+++ +
Sbjct: 522 FLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK-YGFVLDIFAGNSLVNMYA 580

Query: 387 RSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           + G +D+A      +  E    +W+A++     H +     ++ N +L
Sbjct: 581 KCGSIDDAGRAFSELT-ERGIVSWSAMIGGLAQHGHGRQALQLFNQML 627



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 159/586 (27%), Positives = 263/586 (44%), Gaps = 83/586 (14%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA I K GL     + N LI+ Y KC    YA  L++E  + D VSW+++++ Y Q  L
Sbjct: 78  IHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGL 137

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
               +  F  M  L  ++ + F F+S++KAC  +   R+GKQVH   V+S F  D  V +
Sbjct: 138 GGGALMAFHEMHLLG-VKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVAN 196

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +LV MYAKC    +++ +FD I  +N VSW A+ S Y +     +A+ +F          
Sbjct: 197 TLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLF---------- 246

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           +  ++SG+    NE                      LSS+V AC        GK IHG +
Sbjct: 247 YEMVLSGI--KPNEFS--------------------LSSMVNACTGLRDSSRGKIIHGYL 284

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           I LGY+   F +NA+VDMYAK  D+  A  +F ++++ D+VSW ++I G   H   E+ L
Sbjct: 285 IKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQAL 344

Query: 325 ALYDEM--------VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
            L  +M        +   ++ +    VGL+   S   L+   R  F  + E       L 
Sbjct: 345 ELLGQMKRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPE-----KDLI 399

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEP---DEPTWAALLSACKHHRNTEMGTRVANHL 433
            +  ++   S+     EA +L   M  E    ++ T + +L +    +   +  +V  H 
Sbjct: 400 AWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQV--HG 457

Query: 434 LSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS-----YIEFGKGSH 488
           LS+K    S   +++++  S     HV    ++     +     ++     Y ++G+G  
Sbjct: 458 LSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQG-- 515

Query: 489 IFYAGETSHPLKDEIFELLTEL-DAEMKRRGYVPDTSSVLH---DMEQKEKERQLFWHSE 544
                       +E  +L  E+ D E+K   +V   SS+L+   ++   E+ +QL  H  
Sbjct: 516 ------------EEALKLFLEMQDMELKPDRFV--CSSLLNACANLSAFEQGKQLHVH-- 559

Query: 545 RLAVAYGLLKSV-PGTVLRVVKNLRVCGDCHIVMKMISRITKREIV 589
              + YG +  +  G  L  V     CG      +  S +T+R IV
Sbjct: 560 --ILKYGFVLDIFAGNSL--VNMYAKCGSIDDAGRAFSELTERGIV 601



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 181/384 (47%), Gaps = 43/384 (11%)

Query: 56  YAHHLLEE-MPQRDHVSWAS----ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFAS 110
           + HH  ++ + QR H+ +      I T    +  PQ T  +   ++      P    ++ 
Sbjct: 4   WRHHSFQKPLHQRLHLPFKPAPKLIQTVPQFSEDPQTTAIL--NLIDKGNFTPTSVSYSK 61

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN 170
           L+  C +  + R G Q+HA    S   DD  +++ L+++Y+KC     AR + D      
Sbjct: 62  LLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVD------ 115

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
                                    ++   +L  W+AL+SG  Q+     A  +F EM  
Sbjct: 116 -------------------------ESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHL 150

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290
            GV   +    SS++ AC+    L +GKQ+HG+V+  G+E  +F++N +V MYAKC + +
Sbjct: 151 LGVK-CNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFL 209

Query: 291 AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350
            +K +F  +  ++VVSW ++     Q     E + L+ EMV +G+KPNE +   ++ AC+
Sbjct: 210 DSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT 269

Query: 351 HVGLVGKGRKLFKSMIE-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
            +    +G+ +   +I+  Y   P       L+D+ ++ G L +A ++ + +  +PD  +
Sbjct: 270 GLRDSSRGKIIHGYLIKLGYDWDPF--SANALVDMYAKVGDLADAISVFEKIK-QPDIVS 326

Query: 410 WAALLSACKHHRNTEMGTRVANHL 433
           W A+++ C  H + E    +   +
Sbjct: 327 WNAVIAGCVLHEHHEQALELLGQM 350


>gi|224138422|ref|XP_002322810.1| predicted protein [Populus trichocarpa]
 gi|222867440|gb|EEF04571.1| predicted protein [Populus trichocarpa]
          Length = 562

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 224/569 (39%), Positives = 331/569 (58%), Gaps = 33/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N LI+ + +   +  A  + +EM +R+  +W ++++   Q    +  + +F  M  L  L
Sbjct: 27  NILINGHVQHGDLDSAIKVFDEMLERNVATWNAMVSGLIQFEFNENGLFLFREMHELGFL 86

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            PD F   S+++ C  L A+  GKQVHA  +   +  + VV SSL  MY K G       
Sbjct: 87  -PDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEK 145

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           V  +++++N V+W  +++  A++G  +  ++++              +SGL         
Sbjct: 146 VIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYNMMK----------MSGLRP------- 188

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
                          D + L S++ + A  A L  G+QIH   I  G  S + + ++++ 
Sbjct: 189 ---------------DKITLVSVISSSAELATLFQGQQIHAEAIKAGANSAVAVLSSLIS 233

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY+KC  +  +          D V W+S+I     HG+ EE + L+++M   G+  N+VT
Sbjct: 234 MYSKCGCLEDSMKALLDCEHPDSVLWSSMIAAYGFHGRGEEAVHLFEQMEQEGLGGNDVT 293

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+ L+YACSH GL  KG   FK M+E YG+ P L+HYTC++DLL RSG LDEAE +I++M
Sbjct: 294 FLSLLYACSHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSM 353

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P E D   W  LLSAC+ HRN +M TR A  +L L P+D ++Y+LLSN++ASA  W+ VS
Sbjct: 354 PLEADVVIWKTLLSACRIHRNADMATRTAEEILRLNPQDSATYVLLSNIHASAKRWKDVS 413

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           KVR  M    VKKEPG S++E       F  G+ SHP+ +EI   L EL  EMK RGYVP
Sbjct: 414 KVRTTMRDRNVKKEPGVSWLEVKNRVFQFSMGDKSHPMSEEIDLYLKELMEEMKLRGYVP 473

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           DT++V HD + +EKE  L  HSE+LA+A+GL+   PG+ +RV+KNLR+C DCH+ +K+IS
Sbjct: 474 DTATVFHDTDSEEKENSLVNHSEKLAIAFGLMNIPPGSPIRVMKNLRICSDCHVAIKLIS 533

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
            I  REI+VRD +R+HHFK GKCSC D+W
Sbjct: 534 DINNREIIVRDTSRFHHFKHGKCSCGDYW 562



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 149/278 (53%), Gaps = 7/278 (2%)

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           MY K G    A A F+++ ++N +S   +++ + + G    A+++F++   RN+  W A+
Sbjct: 1   MYFKMGEIQEAIAFFNAMPMRNIMSHNILINGHVQHGDLDSAIKVFDEMLERNVATWNAM 60

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
           VSGL+Q     +  + F EM   G  + D   L S++  CA       GKQ+H  V+  G
Sbjct: 61  VSGLIQFEFNENGLFLFREMHELGF-LPDEFTLGSVLRGCAGLRASYAGKQVHAYVLKYG 119

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
           YE  L + +++  MY K   +   + +   MR ++VV+W ++I G AQ+G  E  L LY+
Sbjct: 120 YEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNVVAWNTLIAGNAQNGHFEGVLDLYN 179

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
            M  +G++P+++T V +I + + +  + +G+++    I+  G   ++   + L+ + S+ 
Sbjct: 180 MMKMSGLRPDKITLVSVISSSAELATLFQGQQIHAEAIK-AGANSAVAVLSSLISMYSKC 238

Query: 389 GHLDEAENLIKAMP--FEPDEPTWAALLSACKHHRNTE 424
           G L+++   +KA+     PD   W+++++A   H   E
Sbjct: 239 GCLEDS---MKALLDCEHPDSVLWSSMIAAYGFHGRGE 273



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 146/325 (44%), Gaps = 37/325 (11%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR CA  + +   K +HA ++K G      + ++L   Y K   +     +++ M  R+ 
Sbjct: 96  LRGCAGLRASYAGKQVHAYVLKYGYEFNLVVGSSLAHMYMKSGSLGEGEKVIKAMRIRNV 155

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W +++    Q    +  + +++ M+ +  L+PD     S++ +   L     G+Q+HA
Sbjct: 156 VAWNTLIAGNAQNGHFEGVLDLYN-MMKMSGLRPDKITLVSVISSSAELATLFQGQQIHA 214

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCG-LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
             + +       V SSL+ MY+KCG L ++ +A+ D  +  +SV W++M++AY   GR +
Sbjct: 215 EAIKAGANSAVAVLSSLISMYSKCGCLEDSMKALLDC-EHPDSVLWSSMIAAYGFHGRGE 273

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A+ +FEQ                               M +EG+   D   L S++ AC
Sbjct: 274 EAVHLFEQ-------------------------------MEQEGLGGNDVTFL-SLLYAC 301

Query: 249 ANFAVLELGKQIHGLVI-ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVS 306
           ++  + E G     L++   G +  L     +VD+  +   +  A+ +   M    DVV 
Sbjct: 302 SHNGLKEKGMGFFKLMVEKYGLKPRLEHYTCVVDLLGRSGCLDEAEAMIRSMPLEADVVI 361

Query: 307 WTSIIVGTAQHGQAEETLALYDEMV 331
           W +++     H  A+      +E++
Sbjct: 362 WKTLLSACRIHRNADMATRTAEEIL 386


>gi|147801010|emb|CAN60118.1| hypothetical protein VITISV_016374 [Vitis vinifera]
          Length = 1166

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 231/599 (38%), Positives = 342/599 (57%), Gaps = 36/599 (6%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L  C+  +  +  K +HA II  G H +  + N L+  YGK  ++  A  +L+ MPQ D 
Sbjct: 506  LAACSNPECLIESKIVHALIIVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDR 565

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV-FASLVKACGSLG-ATRLGKQV 127
            V+W +++  + +   P + +  +   L  +K  P +++   S++ AC +     + G  +
Sbjct: 566  VTWNALIGGHAENEEPNEAVKAYK--LIREKGIPANYITMVSVLGACSAPDDLLKHGMPI 623

Query: 128  HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
            HA  VL+ F  DD VK+SL+ MYAKCG  N++  +FD +  K+ ++W AM++A A  G  
Sbjct: 624  HAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCG 683

Query: 188  KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
            ++A++IF                                EMR  GV++ D    S  + A
Sbjct: 684  EEALKIFG-------------------------------EMRNVGVNL-DQFSFSGGLAA 711

Query: 248  CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
             AN AVLE G+Q+HGLVI LG+ES L ++NA +DMY KC ++     +  +   +  +SW
Sbjct: 712  TANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSW 771

Query: 308  TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
              +I   A+HG  ++    + EM+  G KP+ VTFV L+ AC+H GLV +G   + SM  
Sbjct: 772  NILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTR 831

Query: 368  DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
            ++G+ P ++H  C++DLL RSG L  AE  IK MP  P++  W +LL+AC+ H N E+  
Sbjct: 832  EFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELAR 891

Query: 428  RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
            + A HLL L P D S+Y+L SNV A++  W+ V  +RK M    +KK+P  S+++     
Sbjct: 892  KTAEHLLELDPSDDSAYVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKV 951

Query: 488  HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
            H F  GE  HP    I   L EL    K  GYVPDTS  LHDM++++KE  L+ HSERLA
Sbjct: 952  HSFGMGEKYHPQASRISAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLA 1011

Query: 548  VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
            +A+GL+ +   + LR+ KNLRVCGDCH V K +S I  R+IV+RD  R+HHF  GKCSC
Sbjct: 1012 LAFGLINTPESSTLRIFKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSC 1070



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/418 (24%), Positives = 201/418 (48%), Gaps = 36/418 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  ++KLGL     + NTL+  Y +    + A  + + M +RD +SW S++  Y Q 
Sbjct: 418 RGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQD 477

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 + I + +L + K+  +H  FAS + AC +       K VHA  +++ F D  +V
Sbjct: 478 GKCLDGLKILAELLQMGKVM-NHVTFASALAACSNPECLIESKIVHALIIVAGFHDFLIV 536

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LV MY K G+   A+ V  ++   + V+W A++  +A +    +A++ ++       
Sbjct: 537 GNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKL------ 590

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC-ANFAVLELGKQIH 261
                                    +R +G+   + + + S++GAC A   +L+ G  IH
Sbjct: 591 -------------------------IREKGIP-ANYITMVSVLGACSAPDDLLKHGMPIH 624

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             ++  G+ES  ++ N+++ MYAKC D+ ++  IF  +  K  ++W +++   A HG  E
Sbjct: 625 AHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGE 684

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L ++ EM + GV  ++ +F G + A +++ ++ +G++L   +I+  G    L      
Sbjct: 685 EALKIFGEMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIK-LGFESDLHVTNAA 743

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           +D+  + G + +   ++   P      +W  L+SA   H   +      + +L L P+
Sbjct: 744 MDMYGKCGEMHDVLKML-PQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPK 800



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 192/400 (48%), Gaps = 45/400 (11%)

Query: 23  KTLHAQII----KLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           K LHA  I     LG+ Q     NTLI+ Y K   +++A ++ +EM  R+  SW+++L+ 
Sbjct: 114 KALHAFCIVGSVNLGIFQ----TNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSG 169

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG-ATRLGKQVHACFVLSPFC 137
           Y +  L ++ + +F  M  L  ++P+ F+ ASL+ AC   G     G QVH   V +   
Sbjct: 170 YVRVGLYEEAVGLFCQMWGLG-VEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGIL 228

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D  V ++LV  Y   GL  NA+ +F+ +   N VSWT+++  Y+ SG   + + ++++ 
Sbjct: 229 GDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQR- 287

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
                                         MR+EGV   +    +++  +C       LG
Sbjct: 288 ------------------------------MRQEGVS-GNQNTFATVTSSCGLLEDQVLG 316

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
            Q+ G +I  G+E  + ++N+++ M++  S +  A  +F  M   D++SW ++I   A H
Sbjct: 317 YQVLGHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHH 376

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G   E+L  +  M     + N  T   L+  CS V  +  GR +   ++   G+  ++  
Sbjct: 377 GLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGI-HGLVVKLGLDSNVCI 435

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417
              LL L S +G  ++AE + +AM  E D  +W +++ AC
Sbjct: 436 CNTLLTLYSEAGRSEDAELVFQAMT-ERDLISWNSMM-AC 473



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 205/431 (47%), Gaps = 37/431 (8%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  ++K G+     +   L+  YG   LV  A  L EEMP  + VSW S++  Y+ +  
Sbjct: 218 VHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGN 277

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P + ++++  M   + +  +   FA++  +CG L    LG QV    +   F D   V +
Sbjct: 278 PGEVLNVYQRMRQ-EGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVAN 336

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SL+ M++       A  VFD +   + +SW AM+SAYA  G  ++++  F    +R+L  
Sbjct: 337 SLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHW--MRHL-- 392

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                       NE ++                   LSS++  C++   L+ G+ IHGLV
Sbjct: 393 -----------HNETNS-----------------TTLSSLLSVCSSVDNLKWGRGIHGLV 424

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           + LG +S + I N ++ +Y++      A+ +F  M  +D++SW S++    Q G+  + L
Sbjct: 425 VKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGL 484

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            +  E++  G   N VTF   + ACS+   + +  K+  ++I   G    L     L+ +
Sbjct: 485 KILAELLQMGKVMNHVTFASALAACSNPECLIE-SKIVHALIIVAGFHDFLIVGNALVTM 543

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
             + G + EA+ +++ MP +PD  TW AL+    H  N E    V  + L  +   P++Y
Sbjct: 544 YGKLGMMMEAKKVLQTMP-QPDRVTWNALIGG--HAENEEPNEAVKAYKLIREKGIPANY 600

Query: 445 ILLSNVYASAA 455
           I + +V  + +
Sbjct: 601 ITMVSVLGACS 611



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 142/298 (47%), Gaps = 35/298 (11%)

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           GK +HA  ++          ++L++MY+K G   +AR VFD ++ +N  SW+ MLS Y R
Sbjct: 113 GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 172

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            G  ++A+ +F Q       +W     GL                   GV+  +  +++S
Sbjct: 173 VGLYEEAVGLFCQ-------MW-----GL-------------------GVE-PNGFMVAS 200

Query: 244 IVGACANFAVL-ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           ++ AC+    + + G Q+HG V+  G    +++  A+V  Y     +  A+ +F  M   
Sbjct: 201 LITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDH 260

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           +VVSWTS++VG +  G   E L +Y  M   GV  N+ TF  +  +C  +     G ++ 
Sbjct: 261 NVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVL 320

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
             +I+ YG   S+     L+ + S    ++EA  +   M  E D  +W A++SA  HH
Sbjct: 321 GHIIQ-YGFEDSVSVANSLISMFSSFSSVEEACYVFDHMN-ECDIISWNAMISAYAHH 376



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 99/226 (43%), Gaps = 44/226 (19%)

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           GK +H   I       +F +N +++MY+K  +I  A+ +F  MR ++  SW++++ G  +
Sbjct: 113 GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 172

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH------------------------- 351
            G  EE + L+ +M   GV+PN      LI ACS                          
Sbjct: 173 VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVY 232

Query: 352 -----------VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
                      +GLV   +KLF+ M  D+ +      +T L+   S SG+  E  N+ + 
Sbjct: 233 VGTALVHFYGSIGLVYNAQKLFEEM-PDHNVVS----WTSLMVGYSDSGNPGEVLNVYQR 287

Query: 401 MPFE---PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           M  E    ++ T+A + S+C    +  +G +V  H++    ED  S
Sbjct: 288 MRQEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVS 333


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/558 (40%), Positives = 325/558 (58%), Gaps = 34/558 (6%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           + YAH L E +PQ D V + S+   Y+++N P K IS+F   L  + L PD + F SL+K
Sbjct: 77  MDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYN-LLPDDYTFPSLLK 135

Query: 114 ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS 173
           AC    A + GKQ+H   +     ++  V  +L++MYA C   + A+ VFD I     VS
Sbjct: 136 ACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCVVS 195

Query: 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233
           + A+++ YARS R  +A+ +F Q   R L              N++              
Sbjct: 196 YNAIITGYARSSRPNEALSLFRQLQARKL------------KPNDVTVL----------- 232

Query: 234 DIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
                    S++ +CA    L+LGK IH  V   G +  + ++ A++DMYAKC  +  A 
Sbjct: 233 ---------SVLSSCALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAI 283

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
            +F  M  +D  +W+++IV  A HGQ ++ +++++EM  A V+P+E+TF+GL+YACSH G
Sbjct: 284 SVFESMSVRDTQAWSAMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTG 343

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
           LV +G + F SM E YGI P ++HY C++DLL R+G L EA   I  +P +P    W  L
Sbjct: 344 LVDEGFRYFYSMSEVYGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTL 403

Query: 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473
           LS+C  H N E+  +V N +L L       Y++LSN+ A A  W+ V  +RKLM      
Sbjct: 404 LSSCSSHGNLELAKQVMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAV 463

Query: 474 KEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH-DMEQ 532
           K PG S IE     H F++G+  H +   +   L EL  E+K  GYVPDTS V+H DME 
Sbjct: 464 KIPGCSSIEVDNVVHEFFSGDGVHYVSTALHRALDELVKELKSVGYVPDTSLVVHPDMED 523

Query: 533 KEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRD 592
           +EKE  L +HSE+LA+++GLL + PGT +RVVKNLRVCGDCH   K+IS +  REI++RD
Sbjct: 524 EEKEITLRYHSEKLAISFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISSLIDREIILRD 583

Query: 593 ATRYHHFKDGKCSCNDFW 610
             R+HHFKDGKCSC D+W
Sbjct: 584 VQRFHHFKDGKCSCGDYW 601



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 147/297 (49%), Gaps = 43/297 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C   +     K LH   IKLGL++   +  TLI+ Y  C+ V  A  + +E+ +   
Sbjct: 134 LKACVVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDGAQRVFDEILEPCV 193

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS+ +I+T Y +++ P + +S+F  + A  KL+P+     S++ +C  LGA  LGK +H 
Sbjct: 194 VSYNAIITGYARSSRPNEALSLFRQLQA-RKLKPNDVTVLSVLSSCALLGALDLGKWIHE 252

Query: 130 CFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
            +V     D  V V ++L+DMYAKCG  + A +VF+S+ ++++ +W+AM+ AYA  G+ +
Sbjct: 253 -YVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWSAMIVAYAMHGQGQ 311

Query: 189 DAMEIFEQ------APVRNLF---LWTALVSGLVQSRNEIDAFYSFIE------------ 227
           D M +FE+       P    F   L+    +GLV        FYS  E            
Sbjct: 312 DVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVD--EGFRYFYSMSEVYGIIPGIKHYG 369

Query: 228 ----------MRREGVDIVD-------PLVLSSIVGACANFAVLELGKQIHGLVIAL 267
                     +  E    +D       P++  +++ +C++   LEL KQ+   ++ L
Sbjct: 370 CMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQVMNQILEL 426


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/552 (40%), Positives = 331/552 (59%), Gaps = 35/552 (6%)

Query: 60  LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
           + E MP++D VS+ +I+  Y Q+ + +  + +   M   D L+PD F  +S++       
Sbjct: 198 VFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTD-LKPDSFTLSSVLPIFSEYV 256

Query: 120 ATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAML 178
               GK++H  +V+    D DV + SSLVDMYAK                          
Sbjct: 257 DVIKGKEIHG-YVIRKGIDSDVYIGSSLVDMYAK-------------------------- 289

Query: 179 SAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238
                S R +D+  +F +   R+   W +LV+G VQ+    +A   F +M    V     
Sbjct: 290 -----SARIEDSERVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVK-PGA 343

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
           +  SS++ ACA+ A L LGKQ+HG V+  G+ S +FI++A+VDMY+KC +I AA+ IF R
Sbjct: 344 VAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDR 403

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
           M   D VSWT+II+G A HG   E ++L++EM   GVKPN+V FV ++ ACSHVGLV + 
Sbjct: 404 MNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEA 463

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
              F SM + YG+   L+HY  + DLL R+G L+EA N I  M  EP    W+ LLS+C 
Sbjct: 464 WGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCS 523

Query: 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGY 478
            H+N E+  +VA  + ++  E+  +Y+L+ N+YAS   W+ ++K+R  M    ++K+P  
Sbjct: 524 VHKNLELAEKVAEKIFTVDSENMGAYVLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPAC 583

Query: 479 SYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQ 538
           S+IE    +H F +G+ SHP  D+I E L  +  +M++ GYV DTS VLHD++++ K   
Sbjct: 584 SWIEMKNKTHGFVSGDRSHPSMDKINEFLKAVMEQMEKEGYVADTSGVLHDVDEEHKREL 643

Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
           LF HSERLAVA+G++ + PGT +RV KN+R+C DCH+ +K IS+IT+REI+VRD +R+HH
Sbjct: 644 LFGHSERLAVAFGIINTEPGTTIRVTKNIRICTDCHVAIKFISKITEREIIVRDNSRFHH 703

Query: 599 FKDGKCSCNDFW 610
           F  G CSC D+W
Sbjct: 704 FNRGNCSCGDYW 715



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/402 (28%), Positives = 200/402 (49%), Gaps = 20/402 (4%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LHAQ I+     +    + +I  Y    L+  A  L + +     ++W S++  +   
Sbjct: 25  KQLHAQFIRTQSLSHTS-ASIVISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQ 83

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           +L  K ++ F  M A  +  PDH VF S++K+C  +   R G+ VH   V      D   
Sbjct: 84  SLFSKALASFVEMRASGRC-PDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLGMDCDLYT 142

Query: 143 KSSLVDMYAKC---GLPNNARAVFDSIKLKNSVSW-------TAMLSAYARSGRKKDAME 192
            ++L++MYAK    G   +   VFD +  + S S        T ++     S R+     
Sbjct: 143 GNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRR----- 197

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +FE  P +++  +  +++G  QS    DA     EM    +   D   LSS++   + + 
Sbjct: 198 VFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLK-PDSFTLSSVLPIFSEYV 256

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
            +  GK+IHG VI  G +S ++I +++VDMYAK + I  ++ +F R+  +D +SW S++ 
Sbjct: 257 DVIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVA 316

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G  Q+G+  E L L+ +MV+A VKP  V F  +I AC+H+  +  G++L   ++   G  
Sbjct: 317 GYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRG-GFG 375

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
            ++   + L+D+ S+ G++  A  +   M    DE +W A++
Sbjct: 376 SNIFIASALVDMYSKCGNIKAARKIFDRMNV-LDEVSWTAII 416



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 95/174 (54%), Gaps = 1/174 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  +I+ G+     + ++L+D Y K   ++ +  +   +  RD +SW S++  Y Q 
Sbjct: 262 KEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGYVQN 321

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + +F  M+   K++P    F+S++ AC  L    LGKQ+H   +   F  +  +
Sbjct: 322 GRYNEALRLFRQMVTA-KVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGSNIFI 380

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
            S+LVDMY+KCG    AR +FD + + + VSWTA++  +A  G   +A+ +FE+
Sbjct: 381 ASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEE 434



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 47/97 (48%), Gaps = 1/97 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LH  +++ G      + + L+D Y KC  ++ A  + + M   D VSW +I+  +   
Sbjct: 363 KQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALH 422

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
               + +S+F  M     ++P+   F +++ AC  +G
Sbjct: 423 GHGHEAVSLFEEM-KRQGVKPNQVAFVAVLTACSHVG 458


>gi|302816499|ref|XP_002989928.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
 gi|300142239|gb|EFJ08941.1| hypothetical protein SELMODRAFT_130658 [Selaginella moellendorffii]
          Length = 818

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 222/594 (37%), Positives = 348/594 (58%), Gaps = 8/594 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA+I+  G      +   LI+ YGKC     A  + ++M +RD VSW  ++  Y Q 
Sbjct: 227 RKIHAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQN 286

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV- 141
               + + ++   L ++  +     F S++ AC S+ A   G+ VH+  +L    D +V 
Sbjct: 287 GDFHEALELYQK-LDMEGFKRTKATFVSILGACSSVKALAQGRLVHS-HILERGLDSEVA 344

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME---IFEQAP 198
           V ++LV+MYAKCG    AR VF+++K +++V+W+ ++ AYA +G  KDA +   +F++  
Sbjct: 345 VATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLG 404

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            R+   W A+++  VQ+   + A   F EM        D +   +++ ACA+   L   K
Sbjct: 405 SRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVK 464

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
            +H  +     ES + ++N +++MYA+C  +  A+ +F   + K VVSWT+++   +Q+G
Sbjct: 465 ALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYG 524

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
           +  E L L+ EM   GVKP++VT+  +++ C+H G + +G + F  M E +G+ P+  H+
Sbjct: 525 RYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTADHF 584

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
             ++DLL RSG L +A+ L+++MPFEPD   W   L+AC+ H   E+G   A  +  L P
Sbjct: 585 AAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDP 644

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
              + YI +SN+YA+  MW+ V+ VRK M    +KK PG S+IE     H F +G   HP
Sbjct: 645 SSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHP 704

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSV-P 557
             DEI E LT L   M+  GYVPDT +VLHD+ + EKE  L +HSE++A+A+GL+ S   
Sbjct: 705 RTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGS 764

Query: 558 GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF-KDGKCSCNDFW 610
           G  +RVVKNLRVC DCH   K I+RI  R+I++RD  R+H F  DGKCSC D+W
Sbjct: 765 GEPIRVVKNLRVCSDCHTATKFIARIAGRDIILRDCNRFHRFSSDGKCSCGDYW 818



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 195/396 (49%), Gaps = 41/396 (10%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTAYN 80
           + LH +I      +   + N LI  YGKCD +  A  + E M   QR+ VSW +++ AY 
Sbjct: 27  RALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYA 86

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           Q     + + ++  M  L  L  DH  F S++ AC SL     G+++H     S      
Sbjct: 87  QNGHSTEALVLYWRM-NLQGLGTDHVTFVSVLGACSSLAQ---GREIHNRVFYSGLDSFQ 142

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            + ++LV MYA+ G   +A+ +F S++ ++  SW A++ A+++SG    A+ IF++    
Sbjct: 143 SLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKC- 201

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
                                     +M+      ++      ++   +   VL  G++I
Sbjct: 202 --------------------------DMKPNSTTYIN------VISGFSTPEVLPEGRKI 229

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H  ++A G++S L ++ A+++MY KC     A+++F +M+++D+VSW  +I    Q+G  
Sbjct: 230 HAEIVANGFDSDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDF 289

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
            E L LY ++   G K  + TFV ++ ACS V  + +GR L  S I + G+   +   T 
Sbjct: 290 HEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGR-LVHSHILERGLDSEVAVATA 348

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           L+++ ++ G L+EA  +  AM    D   W+ L+ A
Sbjct: 349 LVNMYAKCGSLEEARKVFNAMK-NRDAVAWSTLIGA 383



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 203/429 (47%), Gaps = 71/429 (16%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H ++   GL  +  L N L+  Y +   V  A  + + +  RD  SW +++ A++Q+
Sbjct: 127 REIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQS 186

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 + IF  M     ++P+   + +++    +      G+++HA  V + F  D VV
Sbjct: 187 GDWSGALRIFKEMKC--DMKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDSDLVV 244

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L++MY KCG  + AR VFD +K ++ VSW  M+  Y ++G   +A+E++++  +   
Sbjct: 245 ATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVQNGDFHEALELYQKLDMEGF 304

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                     +R     V      SI+GAC++   L  G+ +H 
Sbjct: 305 --------------------------KRTKATFV------SILGACSSVKALAQGRLVHS 332

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA------- 315
            ++  G +S + ++ A+V+MYAKC  +  A+ +F  M+ +D V+W+++I   A       
Sbjct: 333 HILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKD 392

Query: 316 ---------------------------QHGQAEETLALYDEMV-SAGVKPNEVTFVGLIY 347
                                      Q+G A   + ++ EM  +AG+KP+ VTF+ ++ 
Sbjct: 393 ARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLE 452

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           AC+ +G + + + L  + I +  +  ++     L+++ +R G L+EAE L  A   E   
Sbjct: 453 ACASLGRLSEVKAL-HAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAK-EKTV 510

Query: 408 PTWAALLSA 416
            +W A+++A
Sbjct: 511 VSWTAMVAA 519



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 155/315 (49%), Gaps = 40/315 (12%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           QPD+  F +++ +C S G    G+ +H     S F  D +V ++L+ MY KC    +AR+
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVAEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 162 VFDSI--KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           VF+S+  + +N VSW AM++AYA++G   +A+ ++          W   + GL       
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLY----------WRMNLQGLG------ 107

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
                            D +   S++GAC++ A    G++IH  V   G +S   ++NA+
Sbjct: 108 ----------------TDHVTFVSVLGACSSLA---QGREIHNRVFYSGLDSFQSLANAL 148

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           V MYA+   +  AK +F  ++ +D  SW ++I+  +Q G     L ++ EM    +KPN 
Sbjct: 149 VTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDMKPNS 207

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
            T++ +I   S   ++ +GRK+   ++ + G    L   T L+++  + G   EA  +  
Sbjct: 208 TTYINVISGFSTPEVLPEGRKIHAEIVAN-GFDSDLVVATALINMYGKCGSSHEAREVFD 266

Query: 400 AMPFEPDEPTWAALL 414
            M  + D  +W  ++
Sbjct: 267 KMK-KRDMVSWNVMI 280



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 146/354 (41%), Gaps = 80/354 (22%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C+  +     + +H+ I++ GL     +   L++ Y KC  ++ A  +   M  RD 
Sbjct: 315 LGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDA 374

Query: 70  VSWASI----------------------------------LTAYNQANLPQKTISIFSTM 95
           V+W+++                                  +T Y Q       + IF  M
Sbjct: 375 VAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTICWNAMITTYVQNGCAVAAMKIFREM 434

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
                L+PD   F ++++AC SLG     K +HA    S    + VV ++L++MYA+CG 
Sbjct: 435 TGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGS 494

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
              A  +F + K K  VSWTAM++A+++ GR  +A+++F+                    
Sbjct: 495 LEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQ-------------------- 534

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG-------KQIHGLVIALG 268
                      EM  EGV   D +  +SI+  C +   LE G        ++HGL     
Sbjct: 535 -----------EMDLEGVK-PDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHGLAPTAD 582

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAE 321
           + +      A+VD+  +   +  AK++   M    D V+W + +     HG+ E
Sbjct: 583 HFA------AMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLE 630



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 51/203 (25%), Positives = 96/203 (47%), Gaps = 19/203 (9%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L  CA       VK LHAQI +  L     + NTLI+ Y +C  ++ A  L     
Sbjct: 447 FIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAK 506

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG- 124
           ++  VSW +++ A++Q     + + +F  M  L+ ++PD   + S++  C   G+   G 
Sbjct: 507 EKTVVSWTAMVAAFSQYGRYAEALDLFQEM-DLEGVKPDDVTYTSILFVCTHGGSLEQGW 565

Query: 125 ------KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAM 177
                  ++H    L+P  D     +++VD+  + G   +A+ + +S+  + + V+W   
Sbjct: 566 RYFTDMAELHG---LAPTADH---FAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTF 619

Query: 178 LSAYARSGRKKDAMEIFEQAPVR 200
           L+A    G+    +E+ E A  R
Sbjct: 620 LTACRIHGK----LELGEAAAER 638


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 227/602 (37%), Positives = 348/602 (57%), Gaps = 35/602 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C   +     K++H  ++K        +   L+D Y K         + EEMP+ D 
Sbjct: 149 LKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDV 208

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           + W+ +++ Y Q+N  ++ + +F  M     L P+ F FAS++++C S+   +LGKQVH 
Sbjct: 209 IPWSFMISRYAQSNQSREAVELFGQMRRAFVL-PNQFTFASVLQSCASIENLQLGKQVH- 266

Query: 130 CFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           C VL    D +V V ++L+D+YAKC                               GR  
Sbjct: 267 CHVLKVGLDGNVFVSNALMDVYAKC-------------------------------GRLD 295

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           ++M++F + P RN   W  ++ G VQS +   A   +  M    V     +  SS++ AC
Sbjct: 296 NSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQ-ASEVTYSSVLRAC 354

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A+ A +ELG QIH L +   Y+  + + NA++DMYAKC  I  A+ +F  +  +D +SW 
Sbjct: 355 ASLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWN 414

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++I G + HG   E L  +  M      PN++TFV ++ ACS+ GL+  G+  FKSM++D
Sbjct: 415 AMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQD 474

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YGI P ++HYTC++ LL RSGHLD+A  LI+ +P EP+   W ALL AC  H + ++G  
Sbjct: 475 YGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIM 534

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            A  +L + P+D ++++LLSN+YA    W  V+ VRK M    VKKEPG S+IE     H
Sbjct: 535 SAQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIENQGIVH 594

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F  G+TSHP    I  +L  L+ + ++ GYVPD ++VL D+E  EK+R L+ HSERLA+
Sbjct: 595 YFSVGDTSHPDMKMISGMLEWLNMKTEKAGYVPDLNAVLRDVEDDEKKRHLWVHSERLAL 654

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+GL+++     +R++KNLR+C DCH  +K+IS+I +R+I++RD  R+HHF+DG CSC D
Sbjct: 655 AFGLIRTPSRGHIRILKNLRICTDCHSAIKLISKIVQRDIIIRDMNRFHHFQDGICSCGD 714

Query: 609 FW 610
           +W
Sbjct: 715 YW 716



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 202/400 (50%), Gaps = 41/400 (10%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           +LHA I KLG      +   LIDAY  C  V  A    + +  +D VSW  ++  Y + +
Sbjct: 62  SLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEND 121

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
             Q ++ +F+ M  +    P+HF FA ++KAC  L A  +GK VH C + + +  D  V 
Sbjct: 122 RFQDSLQLFAEMRMVG-FNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVG 180

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
             L+D+Y K G  N+   VF+ +   + + W+ M+S YA+S + ++A+E+F Q       
Sbjct: 181 VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQ------- 233

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
                                   MRR  V + +    +S++ +CA+   L+LGKQ+H  
Sbjct: 234 ------------------------MRRAFV-LPNQFTFASVLQSCASIENLQLGKQVHCH 268

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           V+ +G +  +F+SNA++D+YAKC  +  +  +F  +  ++ V+W ++IVG  Q G  ++ 
Sbjct: 269 VLKVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKA 328

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK---SMIEDYGITPSLQHYTC 380
           L+LY  M+   V+ +EVT+  ++ AC+ +  +  G ++       I D  +         
Sbjct: 329 LSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVG----NA 384

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           L+D+ ++ G +  A  L+  M  E DE +W A++S    H
Sbjct: 385 LIDMYAKCGSIKNAR-LVFDMLSERDEISWNAMISGYSMH 423



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 162/352 (46%), Gaps = 37/352 (10%)

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTM-LALDKLQPDHFVFASLVKACGSLGATR 122
           MP R+ VS+ +++  Y Q+    + + +FS +     +L P  FVF +++K   S+    
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNP--FVFTTILKLLVSVECAE 58

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           L   +HAC                     K G  +NA               TA++ AYA
Sbjct: 59  LAYSLHACIY-------------------KLGHESNA------------FVGTALIDAYA 87

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
             G    A + F+    +++  WT +V+   ++    D+   F EMR  G +  +    +
Sbjct: 88  VCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFN-PNHFTFA 146

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            ++ AC       +GK +HG V+   YE  L++   ++D+Y K  D      +F  M + 
Sbjct: 147 GVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKH 206

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           DV+ W+ +I   AQ  Q+ E + L+ +M  A V PN+ TF  ++ +C+ +  +  G+++ 
Sbjct: 207 DVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVH 266

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
             +++  G+  ++     L+D+ ++ G LD +  L   +P   +E TW  ++
Sbjct: 267 CHVLK-VGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELP-NRNEVTWNTMI 316



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 140/312 (44%), Gaps = 44/312 (14%)

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P RN   +  L+ G VQS    +    F  + REG ++ +P V ++I+    +    EL 
Sbjct: 2   PDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHEL-NPFVFTTILKLLVSVECAELA 60

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
             +H  +  LG+ES  F+  A++D YA C  + +A+  F  +  KD+VSWT ++   A++
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
            + +++L L+ EM   G  PN  TF G++ AC  +     G+ +   +++       L  
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTC-YEMDLYV 179

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMP----------------------------------F 403
              LLDL ++ G  ++   + + MP                                   
Sbjct: 180 GVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFV 239

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
            P++ T+A++L +C    N ++G +V  H+L +         L  NV+ S A+    +K 
Sbjct: 240 LPNQFTFASVLQSCASIENLQLGKQVHCHVLKVG--------LDGNVFVSNALMDVYAKC 291

Query: 464 RKLMSVMEVKKE 475
            +L + M++  E
Sbjct: 292 GRLDNSMKLFME 303


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 232/606 (38%), Positives = 346/606 (57%), Gaps = 40/606 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           + VCA  Q     K LH+ +I+ GL     +  +L+D Y KC LVQ A  + + M + + 
Sbjct: 269 ISVCAEIQFLSLGKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNV 328

Query: 70  VSWASILTAY--NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           +SW +++  Y        ++ + +FS ML    + P+ F F+ ++KAC SL     G+QV
Sbjct: 329 MSWTALVNGYVRGGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQV 388

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           H   +       D V + LV                               S YA+SGR 
Sbjct: 389 HGQTIKLGLSAIDCVGNGLV-------------------------------SVYAKSGRM 417

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI---VDPLVLSSI 244
           + A + F+    +NL   T +    V+  N      S  ++ RE   +   V     +S+
Sbjct: 418 ESARKCFDVLFEKNLVSETVVDDTNVKDFN----LNSEQDLDREVEYVGSGVSSFTYASL 473

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           +   A    +  G+QIH +V+ +G+ + L ++NA++ MY+KC +  AA  +F  M   +V
Sbjct: 474 LSGAACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNV 533

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           ++WTSII G A+HG A + L L+  M+  GVKPN+VT++ ++ ACSHVGL+ +  K F S
Sbjct: 534 ITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTS 593

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           M +++GI P ++HY C++DLL RSG L EA   I +MPF+ D   W   L +C+ HRNT+
Sbjct: 594 MRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTK 653

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +G   A  +L  +P DP++YILLSN+YA+   W+ V+ +RK M   ++ KE G S+IE  
Sbjct: 654 LGEHAAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVE 713

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
              H F+ G+T HP   +I+E L EL  ++K  GYVP+T  VLHD+E ++KE+ LF HSE
Sbjct: 714 NQVHKFHVGDTLHPKAQQIYEKLDELALKIKNVGYVPNTDFVLHDVEDEQKEQYLFQHSE 773

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           +LAVA+ L+ +     +RV KNLRVCGDCH  +K IS ++ REIVVRDA R+HH KDG C
Sbjct: 774 KLAVAFALISTPNPKPIRVFKNLRVCGDCHTAIKYISMVSGREIVVRDANRFHHMKDGTC 833

Query: 605 SCNDFW 610
           SCND+W
Sbjct: 834 SCNDYW 839



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 118/468 (25%), Positives = 210/468 (44%), Gaps = 48/468 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLG-LHQYGPLPNTLIDAYGK-CDL--VQYAHHLLEEMP 65
           +R C +     T   L   ++K G    +  +   LID + K C L  ++ A  + ++M 
Sbjct: 163 IRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMR 222

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +++ V+W  ++T   Q     + I +F  ML      PD F    L+  C  +    LGK
Sbjct: 223 EKNVVTWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGK 282

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR-- 183
           ++H+  + S    D  V  SLVDMYAKCGL   AR VFD ++  N +SWTA+++ Y R  
Sbjct: 283 ELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGG 342

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            G +++AM +F                                 M  +G    +    S 
Sbjct: 343 GGYEREAMRMFSN-------------------------------MLLQGGVAPNCFTFSG 371

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++ ACA+    + G+Q+HG  I LG  +   + N +V +YAK   + +A+  F  +  K+
Sbjct: 372 VLKACASLPDFDFGEQVHGQTIKLGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKN 431

Query: 304 VVSWTSIIVGTAQ--HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           +VS T +     +  +  +E+ L    E V +GV  +  T+  L+   + +G +GKG ++
Sbjct: 432 LVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGV--SSFTYASLLSGAACIGTIGKGEQI 489

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
             +M+   G    L     L+ + S+ G+ + A  +   M  + +  TW ++++    H 
Sbjct: 490 -HAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDME-DCNVITWTSIINGFAKHG 547

Query: 422 NTEMGTRVANHLL--SLKPEDPSSYILL---SNVYASAAMWQHVSKVR 464
                  +  ++L   +KP D +   +L   S+V      W+H + +R
Sbjct: 548 FASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMR 595



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 170/389 (43%), Gaps = 73/389 (18%)

Query: 58  HHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTM---------------------- 95
           H L       D +   S++T Y+++N P    SIF +M                      
Sbjct: 76  HKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRN 135

Query: 96  -----------LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VK 143
                      L  D + P+ + F ++++AC   G  + G  +    + + + D  V V 
Sbjct: 136 CLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHVCVG 195

Query: 144 SSLVDMYAK-CGLPN--NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
             L+DM+ K C L +  +AR VFD ++ KN V+WT M++  A+ G   +A++        
Sbjct: 196 CELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAID-------- 247

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
            LFL   + SG V  R                        L+ ++  CA    L LGK++
Sbjct: 248 -LFLEMLVSSGYVPDR----------------------FTLTGLISVCAEIQFLSLGKEL 284

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H  VI  G    L +  ++VDMYAKC  +  A+ +F  MR  +V+SWT+++ G  + G  
Sbjct: 285 HSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGG 344

Query: 321 --EETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
              E + ++  M +  GV PN  TF G++ AC+ +     G ++    I+  G++     
Sbjct: 345 YEREAMRMFSNMLLQGGVAPNCFTFSGVLKACASLPDFDFGEQVHGQTIK-LGLSAIDCV 403

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
              L+ + ++SG ++ A      + FE +
Sbjct: 404 GNGLVSVYAKSGRMESARKCFDVL-FEKN 431



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 168/348 (48%), Gaps = 43/348 (12%)

Query: 79  YNQANLPQKTISIFSTMLALD--KLQPDHFVFASLV-KACGSLGATRLGKQVHACFVLSP 135
           +N  N PQ+     +T+   D      +  + +SL+ K C     T LGK +H     S 
Sbjct: 23  FNHFNNPQQLHKAITTLNLTDTESTHNNKLITSSLLLKQCIRTKNTHLGKLLHHKLTTSN 82

Query: 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK--LKNSVSWTAMLSAYARSGRKKDAMEI 193
              D ++ +SL+ +Y+K   P  A ++F S++   ++ VS+++++S +A +     A+E+
Sbjct: 83  LPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFANNRNCLKAVEM 142

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
           F+Q  ++                   D  Y             +    ++++ AC     
Sbjct: 143 FDQLLLQ-------------------DGVYP------------NEYCFTAVIRACLKGGF 171

Query: 254 LELGKQIHGLVIALGY-ESCLFISNAIVDMYAK-CS--DIIAAKDIFGRMRRKDVVSWTS 309
            + G  + G V+  GY +S + +   ++DM+ K CS  D+ +A+ +F +MR K+VV+WT 
Sbjct: 172 FKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTL 231

Query: 310 IIVGTAQHGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           +I   AQ+G  +E + L+ EM VS+G  P+  T  GLI  C+ +  +  G++L   +I  
Sbjct: 232 MITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRS 291

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G+   L     L+D+ ++ G + EA  +   M  E +  +W AL++ 
Sbjct: 292 -GLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMR-EHNVMSWTALVNG 337


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  437 bits (1123), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 339/602 (56%), Gaps = 35/602 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C         + +H+  IK G      +   LID Y K   +  A  +L+ + ++D 
Sbjct: 352 LRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDV 411

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S++  Y Q    ++ +  F  M A   + PD+   AS + AC  + A   G Q+HA
Sbjct: 412 VSWTSMIAGYVQHEFCKEALETFKEMQACG-IWPDNIGLASAISACAGIKAVHQGSQIHA 470

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
              +S +  D  + + LV +YA+CG+   A + F++I+ K  ++W  ++S +A+SG  ++
Sbjct: 471 RVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEE 530

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+++                               F++M + G    +     S + A A
Sbjct: 531 ALKV-------------------------------FMKMDQAGAK-YNVFTFVSSISASA 558

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           N A ++ GKQIH  VI  GY S   ISNA++ +Y KC  I  AK  F  M +++ VSW +
Sbjct: 559 NLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNT 618

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           II   +QHG+  E L L+D+M   G+KP++VTFVG++ ACSHVGLV +G   FKSM  ++
Sbjct: 619 IITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKSMSNEH 678

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI P   HY C++D+L R+G LD A+  ++ MP   D   W  LLSACK H+N E+G   
Sbjct: 679 GIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSMVWRTLLSACKVHKNLEIGEFA 738

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A HLL L+P D +SY+LLSN YA    W    ++RK+M    V+KEPG S+IE     H 
Sbjct: 739 AKHLLELEPHDSASYVLLSNAYAVTGKWASRDQIRKIMKDRGVRKEPGRSWIEVKNVVHA 798

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F+ G+  HPL D+I+  L+ L+  + + GY  +   + H+ E++ K+   F HSE+LAVA
Sbjct: 799 FFVGDRLHPLADQIYNFLSHLNDRLYKIGYKQENYHLFHEKEKEGKDPTAFVHSEKLAVA 858

Query: 550 YGLLKSVPGTV-LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           +GL+ S+P  + LRV+KNLRVC DCH  MK  S +  REIV+RD  R+HHF +G CSC D
Sbjct: 859 FGLM-SLPSCMPLRVIKNLRVCNDCHTWMKFTSGVMGREIVLRDVYRFHHFNNGSCSCGD 917

Query: 609 FW 610
           +W
Sbjct: 918 YW 919



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 104/399 (26%), Positives = 192/399 (48%), Gaps = 35/399 (8%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           V  +HA+ I  GL  Y  + N LID Y K   V+ A  + EE+  RD+VSW ++L+ Y Q
Sbjct: 61  VPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQ 120

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
             L ++ + ++  M     + P  +V +S++ AC      +LG+ +H       F  +  
Sbjct: 121 NGLGEEAVRLYREM-HRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETF 179

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V ++L+ +Y +C     A  VF  +   +SV++  ++S +A+ G    A+ IF+      
Sbjct: 180 VGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFD------ 233

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                                    EM+  G+   D + ++S++ AC+    L  GKQ+H
Sbjct: 234 -------------------------EMQLSGLS-PDSVTIASLLAACSAVGDLRKGKQLH 267

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             ++  G      +  +++D+Y K  DI  A  IF    R +VV W  ++V   Q     
Sbjct: 268 SYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLA 327

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           ++  ++  M++AGV+PN+ T+  ++  C+H G +G G ++    I++ G    +     L
Sbjct: 328 KSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKN-GFQSDMYVSGVL 386

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           +D+ S+ G LD+A+ ++  M  E D  +W ++++    H
Sbjct: 387 IDMYSKYGWLDKAQRILD-MIEEKDVVSWTSMIAGYVQH 424



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 189/407 (46%), Gaps = 35/407 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C + ++    + +H Q+ K G      + N LI  Y +C   + A  +  +M   D 
Sbjct: 150 LSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDS 209

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V++ ++++ + Q     + + IF  M  L  L PD    ASL+ AC ++G  R GKQ+H+
Sbjct: 210 VTFNTLISGHAQCGHGDRALGIFDEM-QLSGLSPDSVTIASLLAACSAVGDLRKGKQLHS 268

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +    D +++ SL+D+Y K G    A  +FDS    N V W  ML AY   G+  D
Sbjct: 269 YLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAY---GQIDD 325

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
             + F                         D FY  +           P +L +    C 
Sbjct: 326 LAKSF-------------------------DIFYRMLAAGVRPNKFTYPCMLRT----CT 356

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +   + LG+QIH L I  G++S +++S  ++DMY+K   +  A+ I   +  KDVVSWTS
Sbjct: 357 HTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTS 416

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G  QH   +E L  + EM + G+ P+ +     I AC+ +  V +G ++  + +   
Sbjct: 417 MIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQI-HARVYVS 475

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           G +  +  +  L+ L +R G   EA +  +A+  + +  TW  L+S 
Sbjct: 476 GYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHK-EGITWNGLISG 521



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 120/491 (24%), Positives = 208/491 (42%), Gaps = 94/491 (19%)

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFST-------MLALDKLQPDHFVFASLVKAC- 115
           M  R   S+   L  +   + P+K + +F+        + A+D        FA  ++AC 
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVD--------FACALRACR 52

Query: 116 GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWT 175
           GS     L  ++HA  ++       ++ + L+D+YAK G    AR               
Sbjct: 53  GSGRRWPLVPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRAR--------------- 97

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
                            +FE+  VR+   W A++SG  Q+    +A   + EM R GV +
Sbjct: 98  ----------------RVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGV-V 140

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
             P VLSSI+ AC    + +LG+ IH  V   G+ S  F+ NA++ +Y +C     A  +
Sbjct: 141 PTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRV 200

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
           F  M   D V++ ++I G AQ G  +  L ++DEM  +G+ P+ VT   L+ ACS VG +
Sbjct: 201 FCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDL 260

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA--------------------- 394
            KG++L   +++  G++        LLDL  +SG ++EA                     
Sbjct: 261 RKGKQLHSYLLKA-GMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVA 319

Query: 395 ----ENLIK---------AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
               ++L K         A    P++ T+  +L  C H     +G ++  H L++K    
Sbjct: 320 YGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQI--HSLTIKNGFQ 377

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
           S   +   +    + +  + K ++++ ++E K    ++ +          AG   H    
Sbjct: 378 SDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSM---------IAGYVQHEFCK 428

Query: 502 EIFELLTELDA 512
           E  E   E+ A
Sbjct: 429 EALETFKEMQA 439


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/590 (39%), Positives = 354/590 (60%), Gaps = 36/590 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K++H   +K+   +   +   L++ Y K   +  A    EEMP+ D + W+ +++ Y Q+
Sbjct: 225 KSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQS 284

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV- 141
           +  ++ + +F  M     + P++F FAS+++AC SL    LG Q+H+C VL    D +V 
Sbjct: 285 DKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSC-VLKVGLDSNVF 343

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V ++L+D+YAKCG            +++NSV                   ++F  +  +N
Sbjct: 344 VSNALMDVYAKCG------------EIENSV-------------------KLFTGSTEKN 372

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQI 260
              W  ++ G VQ  +   A   F  M   G+DI    +  SS++ A A+   LE G+QI
Sbjct: 373 EVAWNTIIVGYVQLGDGEKALNLFSNML--GLDIQPTEVTYSSVLRASASLVALEPGRQI 430

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H L I   Y     ++N+++DMYAKC  I  A+  F +M ++D VSW ++I G + HG  
Sbjct: 431 HSLTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLG 490

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
            E L L+D M  +  KPN++TFVG++ ACS+ GL+ KGR  FKSM++DYGI P ++HYTC
Sbjct: 491 MEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTC 550

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++ LL RSG  DEA  LI  +PF+P    W ALL AC  H+N ++G   A  +L ++P+D
Sbjct: 551 MVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQD 610

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
            ++++LLSN+YA+A  W +V+ VRK M   +VKKEPG S++E     H F  G+TSHP  
Sbjct: 611 DATHVLLSNMYATAKRWDNVAYVRKNMKKKKVKKEPGLSWVENQGVVHYFTVGDTSHPNI 670

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
             IF +L  L  + +  GYVPD S VL D+E  EKER L+ HSERLA+A+GL++   G  
Sbjct: 671 KLIFAMLEWLYKKTRDAGYVPDCSVVLLDVEDDEKERLLWMHSERLALAFGLIQIPSGCS 730

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +R++KNLR+C DCH V+K++S+I +REIV+RD  R+HHF+ G CSC D+W
Sbjct: 731 IRIIKNLRICVDCHAVIKLVSKIVQREIVIRDINRFHHFRQGVCSCGDYW 780



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 109/192 (56%), Gaps = 1/192 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA   +      +H+ ++K+GL     + N L+D Y KC  ++ +  L     +++ 
Sbjct: 314 LQACASLVLLNLGNQIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNE 373

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W +I+  Y Q    +K +++FS ML LD +QP    ++S+++A  SL A   G+Q+H+
Sbjct: 374 VAWNTIIVGYVQLGDGEKALNLFSNMLGLD-IQPTEVTYSSVLRASASLVALEPGRQIHS 432

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + + +  D VV +SL+DMYAKCG  ++AR  FD +  ++ VSW A++  Y+  G   +
Sbjct: 433 LTIKTMYNKDSVVANSLIDMYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGME 492

Query: 190 AMEIFEQAPVRN 201
           A+ +F+     N
Sbjct: 493 ALNLFDMMQQSN 504



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 98/457 (21%), Positives = 204/457 (44%), Gaps = 37/457 (8%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           M    Y + L+   R++     K+LH  I+K G        N L++ Y     ++ A  L
Sbjct: 1   MDSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKL 60

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
            +EMP  + VS+ ++   +++++  Q+   +    L  +  + + FVF +L+K   S+  
Sbjct: 61  FDEMPLTNTVSFVTLAQGFSRSHQFQRARRL-LLRLFREGYEVNQFVFTTLLKLLVSMDL 119

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
                 VHA         D  V ++L+D Y+ C                           
Sbjct: 120 ADTCLSVHAYVYKLGHQADAFVGTALIDAYSVC--------------------------- 152

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
               G    A ++F+    +++  WT +V+   ++    D+   F +MR  G    +   
Sbjct: 153 ----GNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYR-PNNFT 207

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           +S+ + +C      ++GK +HG  + + Y+  L++  A++++Y K  +I  A+  F  M 
Sbjct: 208 ISAALKSCNGLEAFKVGKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMP 267

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
           + D++ W+ +I   AQ  +++E L L+  M  S+ V PN  TF  ++ AC+ + L+  G 
Sbjct: 268 KDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGN 327

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           ++   +++  G+  ++     L+D+ ++ G ++ +  L      E +E  W  ++     
Sbjct: 328 QIHSCVLK-VGLDSNVFVSNALMDVYAKCGEIENSVKLFTGST-EKNEVAWNTIIVGYVQ 385

Query: 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
             + E    + +++L L  + P+     S + ASA++
Sbjct: 386 LGDGEKALNLFSNMLGLDIQ-PTEVTYSSVLRASASL 421


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 225/596 (37%), Positives = 348/596 (58%), Gaps = 10/596 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQ--YAHHLLEEMPQRDHVSWASILTAY 79
           +K +H  +++ GL Q   +   LI    K  +    Y   ++E +  R+   W +++  Y
Sbjct: 66  IKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVIRGY 125

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA-CFVLSPFCD 138
                  + I+++  M   +++ P  F F++L+KACGS+G   LG+Q HA  F L  FC 
Sbjct: 126 TIEGKFDEAIAMYGCMRK-EEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCF 184

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
              V ++++DMY KCG    AR VFD +  ++ +SWT +++AYAR G  + A ++FE  P
Sbjct: 185 V-YVGNTMIDMYVKCGSIVCARKVFDEMPERDVISWTELIAAYARVGNMESAADLFESLP 243

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            +++  WTA+V+G  Q+    +A   F  M + G+   D + ++  + ACA     +   
Sbjct: 244 TKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIR-ADEVTVAGYISACAQLGASKYAD 302

Query: 259 QIHGLVIALGYESC--LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           +   +    GY     + I +A++DMY+KC ++  A ++F  M  K+V S++S+I+G A 
Sbjct: 303 RAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFVSMNNKNVFSYSSMILGLAT 362

Query: 317 HGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
           HG+A+E L L+  MV+   +KPN VTFVG + ACSH GLV +GR++F SM + +G+ P+ 
Sbjct: 363 HGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSHSGLVDQGRQVFASMYQTFGVEPTR 422

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
            HYTC++DLL R+G L EA  LIK M  EP    W ALL AC+ H N ++    A HL  
Sbjct: 423 DHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPDIAEIAAEHLFE 482

Query: 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS-HIFYAGE 494
           L+P+   +YILLSNVY+SA  W  V  VRKL+    +KK P  S++    G  H F+ G 
Sbjct: 483 LEPDIIGNYILLSNVYSSAGDWGGVLSVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGN 542

Query: 495 TSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLK 554
            +HP+  +I + L EL   +   GY PD SSV +D+    K   L  H+E+LA+A+ LL 
Sbjct: 543 LNHPMSKKIQDKLEELVERLTALGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLT 602

Query: 555 SVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +     ++++KNLR+C DCH+ M++ S +T R I++RD  R+HHF+ G CSC DFW
Sbjct: 603 TNRDYTIKIMKNLRMCQDCHMFMRLASEVTGRVIIMRDNMRFHHFRSGACSCGDFW 658



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 105/247 (42%), Gaps = 14/247 (5%)

Query: 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
           ++ N   + +S I  +RE       L++SS++    +   L   KQIHG V+  G +   
Sbjct: 30  RTNNNNSSTFSEISHQRE-------LLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSC 82

Query: 274 FISNAIVDMYAKCSDIIA--AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
           +I   ++    K    +    + +   ++ ++   WT++I G    G+ +E +A+Y  M 
Sbjct: 83  YILTKLIRTLTKLGVPMDPYPRRVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMR 142

Query: 332 SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
              + P   TF  L+ AC  +G +  GR+         G        T ++D+  + G +
Sbjct: 143 KEEITPVSFTFSALLKACGSMGDLNLGRQFHAQTFRLRGFCFVYVGNT-MIDMYVKCGSI 201

Query: 392 DEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451
             A  +   MP E D  +W  L++A     N E     A+   SL  +D  ++  +   +
Sbjct: 202 VCARKVFDEMP-ERDVISWTELIAAYARVGNME---SAADLFESLPTKDMVAWTAMVTGF 257

Query: 452 ASAAMWQ 458
           A  A  Q
Sbjct: 258 AQNAKPQ 264


>gi|357509743|ref|XP_003625160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124360204|gb|ABN08217.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355500175|gb|AES81378.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 596

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/588 (37%), Positives = 350/588 (59%), Gaps = 35/588 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LHA IIKLGL     L + LI+ Y K  L   +  +  + P +   +W+S+++++ Q +L
Sbjct: 42  LHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSPHKSATTWSSVISSFAQNDL 101

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL-SPFCDDDVVK 143
           P  +++ F  ML    + PD  +F S  K+CG L +  + K +H CF L + +  D  V 
Sbjct: 102 PLLSLNYFRLMLR-QGVPPDDHIFPSATKSCGILSSLPVAKMLH-CFALKTAYHLDIFVG 159

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           SS++DMYAKCG    A  VFD +  +N VSW+ ++  Y + G   +++ +F++      F
Sbjct: 160 SSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQLGEDDESLRLFKR------F 213

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
           L                     +E   EG   V+   LSS++  C    +L++G+ IHGL
Sbjct: 214 L---------------------VEEENEG---VNDFTLSSVLRVCGGSTLLQMGRLIHGL 249

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
                ++S  F++++++ +Y+KC  +  A D+F  +  +++  W ++++  AQH   ++T
Sbjct: 250 SFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKT 309

Query: 324 LALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
             L+D+M S  G+K N +TF+ ++YACSH GLV KG+  F+ +++DYGI P  QHY+ ++
Sbjct: 310 FELFDKMKSVGGMKANFITFLCVLYACSHAGLVEKGKYYFE-LMKDYGIEPGTQHYSTMV 368

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G L++A  LI+ MP EP E  W ALL+ C+ H NT++ + VA+ +  L      
Sbjct: 369 DLLGRAGKLNDAVKLIEEMPMEPTESVWGALLTGCRLHGNTKLASYVADRVSELGSVSSG 428

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            +++LSN YA+A  W+  +K RK+M    +KKE G S++E G   H F AG+ SH    E
Sbjct: 429 LHVMLSNAYAAAGRWEEAAKARKMMRDRGIKKETGLSWVEEGNRIHTFAAGDRSHAKSVE 488

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I++ L EL  EM + GYV DTS VL +++ +EK R + +HSERLA+A+G +    G  +R
Sbjct: 489 IYDKLDELGEEMDKAGYVADTSFVLKEVDGEEKSRSIRYHSERLAIAFGFITFPHGQPIR 548

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V+KNLRVCGDCH  +K IS+ T R I+VRD  R+H F+DGKC+C D+W
Sbjct: 549 VMKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 596



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/314 (22%), Positives = 137/314 (43%), Gaps = 33/314 (10%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LH   +K   H    + +++ID Y KC  + YAH++ +EMP R+ VSW+ ++  Y Q 
Sbjct: 141 KMLHCFALKTAYHLDIFVGSSVIDMYAKCGDICYAHNVFDEMPYRNVVSWSGLIYGYVQL 200

Query: 83  NLPQKTISIFSTMLALDKLQP-DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
               +++ +F   L  ++ +  + F  +S+++ CG     ++G+ +H     + F     
Sbjct: 201 GEDDESLRLFKRFLVEEENEGVNDFTLSSVLRVCGGSTLLQMGRLIHGLSFKTSFDSSCF 260

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V SSL+ +Y+KCG+   A  VF+ + ++N   W AML A A+        E+F++     
Sbjct: 261 VASSLISLYSKCGVVEEAYDVFEEVTVRNLGMWNAMLIACAQHAHTDKTFELFDK----- 315

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                                     M+  G    + +    ++ AC++  ++E GK   
Sbjct: 316 --------------------------MKSVGGMKANFITFLCVLYACSHAGLVEKGKYYF 349

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS-WTSIIVGTAQHGQA 320
            L+   G E      + +VD+  +   +  A  +   M  +   S W +++ G   HG  
Sbjct: 350 ELMKDYGIEPGTQHYSTMVDLLGRAGKLNDAVKLIEEMPMEPTESVWGALLTGCRLHGNT 409

Query: 321 EETLALYDEMVSAG 334
           +    + D +   G
Sbjct: 410 KLASYVADRVSELG 423



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 83/185 (44%), Gaps = 7/185 (3%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LRVC    +    + +H    K        + ++LI  Y KC +V+ A+ + EE+  R+ 
Sbjct: 231 LRVCGGSTLLQMGRLIHGLSFKTSFDSSCFVASSLISLYSKCGVVEEAYDVFEEVTVRNL 290

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK---Q 126
             W ++L A  Q     KT  +F  M ++  ++ +   F  ++ AC   G    GK   +
Sbjct: 291 GMWNAMLIACAQHAHTDKTFELFDKMKSVGGMKANFITFLCVLYACSHAGLVEKGKYYFE 350

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSG 185
           +   + + P        S++VD+  + G  N+A  + + + ++ + S W A+L+     G
Sbjct: 351 LMKDYGIEPGTQH---YSTMVDLLGRAGKLNDAVKLIEEMPMEPTESVWGALLTGCRLHG 407

Query: 186 RKKDA 190
             K A
Sbjct: 408 NTKLA 412



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 35/162 (21%), Positives = 77/162 (47%), Gaps = 4/162 (2%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L  G Q+H  +I LG ++   +S+ +++ Y+K     ++  IF     K   +W+S+I  
Sbjct: 36  LPKGLQLHAHIIKLGLQTIPLLSHHLINFYSKTHLPYSSLQIFHDSPHKSATTWSSVISS 95

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED-YGIT 372
            AQ+     +L  +  M+  GV P++  F     +C  +  +   + L    ++  Y + 
Sbjct: 96  FAQNDLPLLSLNYFRLMLRQGVPPDDHIFPSATKSCGILSSLPVAKMLHCFALKTAYHLD 155

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
             +   + ++D+ ++ G +  A N+   MP+  +  +W+ L+
Sbjct: 156 IFVG--SSVIDMYAKCGDICYAHNVFDEMPYR-NVVSWSGLI 194


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  437 bits (1123), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 237/647 (36%), Positives = 352/647 (54%), Gaps = 77/647 (11%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA    +L  + +H   I+ GL     + N ++D Y KC  ++ A+ + + M  +D 
Sbjct: 371 LPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDV 430

Query: 70  VSWASILTAYNQANLPQKTISIFSTML--------------------------ALDKL-- 101
           VSW +++T Y+QA   +  +S+F  M                           ALD    
Sbjct: 431 VSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQ 490

Query: 102 ------QPDHFVFASLVKACGSLGATRLGKQVHACFVL---------SPFCDDDVVKSSL 146
                 +P+     SL+ AC S+GA   GK+ H C+ +          P  DD  V + L
Sbjct: 491 MCDCGSRPNVVTLVSLLSACVSVGALLHGKETH-CYAIKFILNLDGPDPGADDLKVINGL 549

Query: 147 VDMYAKCGLPNNARAVFDSI--KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +DMYAKC     AR +FDS+  K ++ V+WT M+  YA+ G   +A+++F          
Sbjct: 550 IDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLF---------- 599

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                SG+ +    I                 +   LS  + ACA  A L  G+Q+H  V
Sbjct: 600 -----SGMFKMDKSIKP---------------NDFTLSCALVACARLAALRFGRQVHAYV 639

Query: 265 IALGYESC-LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           +   Y S  LF++N ++DMY+K  D+  A+ +F  M +++ VSWTS++ G   HG+ E+ 
Sbjct: 640 LRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDA 699

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           L ++DEM    + P+ +TF+ ++YACSH G+V  G   F  M +D+G+ P  +HY C++D
Sbjct: 700 LRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFNRMSKDFGVDPGPEHYACMVD 759

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           L  R+G L EA  LI  MP EP    W ALLSAC+ H N E+G   AN LL L+  +  S
Sbjct: 760 LWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNVELGEFAANRLLELESGNDGS 819

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
           Y LLSN+YA+A  W+ V+++R  M    +KK PG S+I+  KG   FY G+ SHP   +I
Sbjct: 820 YTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQGRKGVATFYVGDRSHPQSQQI 879

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
           +E L +L   +K  GYVP TS  LHD++ +EK   LF HSE+LA+AYG+L   P   +R+
Sbjct: 880 YETLADLIQRIKAIGYVPQTSFALHDVDDEEKGDLLFEHSEKLALAYGILTLHPRAPIRI 939

Query: 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            KNLR+CGDCH  +  IS+I + EI++RD++R+HHFK+G CSC  +W
Sbjct: 940 TKNLRICGDCHSAITYISKIIEHEIILRDSSRFHHFKNGSCSCKGYW 986



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/465 (29%), Positives = 237/465 (50%), Gaps = 24/465 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR-- 67
            + CA         +LHA + + G      + N ++  YGKC  +++AH++ +++  R  
Sbjct: 266 FKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGI 325

Query: 68  -DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
            D VSW S+++AY  A+     +++F  M     + PD     +++ AC SL A+  G+Q
Sbjct: 326 QDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASLAASLRGRQ 385

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           VH   + S   DD  V +++VDMYAKCG    A  VF  +K K+ VSW AM++ Y+++GR
Sbjct: 386 VHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGR 445

Query: 187 KKDAMEIFEQAPVRNLFL----WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
            + A+ +FE+    N+ L    WTA+++G  Q     +A   F +M   G    + + L 
Sbjct: 446 LEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCG-SRPNVVTLV 504

Query: 243 SIVGACANFAVLELGKQIHGLVIAL---------GYESCLFISNAIVDMYAKCSDIIAAK 293
           S++ AC +   L  GK+ H   I           G +  L + N ++DMYAKC     A+
Sbjct: 505 SLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADD-LKVINGLIDMYAKCQSTEVAR 563

Query: 294 DIFGRM--RRKDVVSWTSIIVGTAQHGQAEETLALYDEM--VSAGVKPNEVTFVGLIYAC 349
            +F  +  + +DVV+WT +I G AQHG A   L L+  M  +   +KPN+ T    + AC
Sbjct: 564 KMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVAC 623

Query: 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
           + +  +  GR++   ++ ++  +  L    CL+D+ S+SG +D A+ +   MP + +  +
Sbjct: 624 ARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMP-QRNAVS 682

Query: 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454
           W +L++    H   E   RV + +  + P  P     L  +YA +
Sbjct: 683 WTSLMTGYGMHGRGEDALRVFDEMRKV-PLVPDGITFLVVLYACS 726



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 126/470 (26%), Positives = 201/470 (42%), Gaps = 86/470 (18%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH--VSWASILTAYN 80
           K LH Q I  GL  +  L   LI  Y   +   YA  LLE +P        W  ++    
Sbjct: 178 KLLHQQSIMQGLLFH--LATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRAL 235

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
               P+   +++  M +L    PDH+ F  + KAC +L +  LG  +HA    S F  + 
Sbjct: 236 HLGSPRDVFTLYRQMKSLG-WTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNV 294

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSI---KLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            V +++V MY KCG   +A  +FD +    +++ VSW +++SAY  +     A+ +F + 
Sbjct: 295 FVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKM 354

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
             R+L                                  D + L +I+ ACA+ A    G
Sbjct: 355 TTRHLM-------------------------------SPDVISLVNILPACASLAASLRG 383

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS----------- 306
           +Q+HG  I  G    +F+ NA+VDMYAKC  +  A  +F RM+ KDVVS           
Sbjct: 384 RQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQA 443

Query: 307 ------------------------WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
                                   WT++I G AQ GQ  E L ++ +M   G +PN VT 
Sbjct: 444 GRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVTL 503

Query: 343 VGLIYACSHVGLVGKGRKL----FKSMIEDYGITPS---LQHYTCLLDLLSRSGHLDEAE 395
           V L+ AC  VG +  G++      K ++   G  P    L+    L+D+ ++    + A 
Sbjct: 504 VSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVAR 563

Query: 396 NLIKAM-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLL----SLKPED 440
            +  ++ P + D  TW  ++     H +     ++ + +     S+KP D
Sbjct: 564 KMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPND 613


>gi|326490792|dbj|BAJ90063.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 754

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 231/569 (40%), Positives = 334/569 (58%), Gaps = 33/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT+I    +C +V+ A  + E M  RD ++W +++T   Q  L  + + +F  M A + +
Sbjct: 219 NTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQNGLQSEALDVFRRMRA-EGV 277

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             D + F S++ ACG+L A+  GKQ+HA  + + +  +  V S+LVDMY+KC        
Sbjct: 278 GIDQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFVGSALVDMYSKC-------- 329

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
              SI+L  +V                     F +   +N+  WTA++ G  Q+    +A
Sbjct: 330 --RSIRLAEAV---------------------FRRMTCKNIISWTAMIVGYGQNGCGEEA 366

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F EM+ +G+   D   L S++ +CAN A LE G Q H + +  G    + +S+A+V 
Sbjct: 367 VRVFSEMQTDGIKPND-FTLGSVISSCANLASLEEGAQFHCMALVSGLRPYITVSSALVT 425

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           +Y KC  I  A  +F  M   D VS+T+++ G AQ G+A+ET+ L+++M+  GVKPN VT
Sbjct: 426 LYGKCGSIEDAHRLFDEMPFHDQVSYTALVSGYAQFGKAKETIDLFEKMLLKGVKPNGVT 485

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+G++ ACS  GLV KG   F SM +D+GI     HYTC++DL SRSG L EAE  I+ M
Sbjct: 486 FIGVLSACSRSGLVEKGCSYFHSMQQDHGIVLLDDHYTCMIDLYSRSGRLKEAEEFIRQM 545

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P  PD   WA LLSAC+   + E+G   A +LL   P++P+SY+LL +++AS   W  V+
Sbjct: 546 PRCPDAIGWATLLSACRLRGDMEIGKWAAENLLKTDPQNPASYVLLCSMHASKGEWSEVA 605

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
            +R+ M   +VKKEPG S+I++    HIF A + SHP    I+E L  L+++M   GY P
Sbjct: 606 LLRRGMRDRQVKKEPGCSWIKYKNRVHIFSADDQSHPFSGTIYEKLQWLNSKMAEEGYKP 665

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           D SSVLHD+   EK   L  HSE+LA+A+GL+       +RVVKNLRVC DCH   K IS
Sbjct: 666 DVSSVLHDVADAEKVHMLSNHSEKLAIAFGLIFVPEEMPIRVVKNLRVCVDCHNATKFIS 725

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +IT R+I+VRDA R+H F +G CSC DFW
Sbjct: 726 KITGRDILVRDAVRFHKFSNGICSCGDFW 754



 Score =  213 bits (542), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/381 (33%), Positives = 204/381 (53%), Gaps = 9/381 (2%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD-- 99
           N L+ A     L+     L   MPQRD VS+ +++  ++ A  P +    +  +L  +  
Sbjct: 80  NALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEAV 139

Query: 100 ----KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
               +++P     + +V A  +LG   LG+QVH   +   F       S LVDMYAK GL
Sbjct: 140 VDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMGL 199

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
             +A+ VFD + +KN V +  M++   R    ++A  +FE    R+   WT +V+GL Q+
Sbjct: 200 IGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQN 259

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI 275
             + +A   F  MR EGV I D     SI+ AC   A  E GKQIH   I   Y+  +F+
Sbjct: 260 GLQSEALDVFRRMRAEGVGI-DQYTFGSILTACGALAASEEGKQIHAYTIRTLYDGNIFV 318

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
            +A+VDMY+KC  I  A+ +F RM  K+++SWT++IVG  Q+G  EE + ++ EM + G+
Sbjct: 319 GSALVDMYSKCRSIRLAEAVFRRMTCKNIISWTAMIVGYGQNGCGEEAVRVFSEMQTDGI 378

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
           KPN+ T   +I +C+++  + +G + F  M    G+ P +   + L+ L  + G +++A 
Sbjct: 379 KPNDFTLGSVISSCANLASLEEGAQ-FHCMALVSGLRPYITVSSALVTLYGKCGSIEDAH 437

Query: 396 NLIKAMPFEPDEPTWAALLSA 416
            L   MPF  D+ ++ AL+S 
Sbjct: 438 RLFDEMPFH-DQVSYTALVSG 457



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 159/366 (43%), Gaps = 44/366 (12%)

Query: 116 GSLGATRLGKQVHACFVLS--PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS 173
           G     R+   VH C VL   P      V + L+  YA+ G    AR +FD++   N  +
Sbjct: 20  GGRDGARVPGAVH-CLVLRTLPHPPPTYVLNHLLTAYARSGRLPLARRLFDAMPDPNLFT 78

Query: 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233
             A+LSA A +    D   +F   P R+   + AL++G   +     A  ++  + RE  
Sbjct: 79  RNALLSALAHARLLPDMDRLFASMPQRDAVSYNALIAGFSGAGAPARAAGAYRALLREEA 138

Query: 234 DI----VDP--LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK-- 285
            +    V P  + +S +V A +      LG+Q+H  ++ LG+ +  F  + +VDMYAK  
Sbjct: 139 VVDGARVRPSRITMSGMVMAASALGDRALGRQVHCQIMRLGFGAYAFTWSPLVDMYAKMG 198

Query: 286 -----------------------------CSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
                                        C  +  A+ +F  M  +D ++WT+++ G  Q
Sbjct: 199 LIGDAKRVFDEMVVKNVVMYNTMITGLLRCKMVEEARGVFEAMVDRDSITWTTMVTGLTQ 258

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           +G   E L ++  M + GV  ++ TF  ++ AC  +    +G+++    I       ++ 
Sbjct: 259 NGLQSEALDVFRRMRAEGVGIDQYTFGSILTACGALAASEEGKQIHAYTIRTL-YDGNIF 317

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS- 435
             + L+D+ S+   +  AE + + M  + +  +W A++     +   E   RV + + + 
Sbjct: 318 VGSALVDMYSKCRSIRLAEAVFRRMTCK-NIISWTAMIVGYGQNGCGEEAVRVFSEMQTD 376

Query: 436 -LKPED 440
            +KP D
Sbjct: 377 GIKPND 382


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/603 (37%), Positives = 358/603 (59%), Gaps = 39/603 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ-RD 68
           ++ CA  +    V+ LH + +K GL     +   L+ A  KC  +  A  L   M   + 
Sbjct: 311 IKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQS 370

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW ++++ Y Q     + +++FS M   + ++P+HF +++++               H
Sbjct: 371 VVSWTAMISGYLQNGDTDQAVNLFSLMRR-EGVKPNHFTYSTILTV------------QH 417

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           A F+     +  V+K++                       K+S   TA+L A+ + G   
Sbjct: 418 AVFISEIHAE--VIKTNYE---------------------KSSSVGTALLDAFVKIGNIS 454

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           DA+++FE    +++  W+A+++G  Q+    +A   F ++ REG+   +     SI+ AC
Sbjct: 455 DAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIK-PNEFTFCSIINAC 513

Query: 249 -ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
            A  A +E GKQ H   I L   + L +S+++V +YAK  +I +A +IF R + +D+VSW
Sbjct: 514 TAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSW 573

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            S+I G AQHGQA++ L +++EM    ++ + +TF+G+I AC+H GLVGKG+  F  MI 
Sbjct: 574 NSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAGLVGKGQNYFNIMIN 633

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
           D+ I P+++HY+C++DL SR+G L +A ++I  MPF P    W  +L+A + HRN E+G 
Sbjct: 634 DHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVWRIVLAASRVHRNIELGK 693

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
             A  ++SL+P+  ++Y+LLSN+YA+A  W     VRKLM    VKKEPGYS+IE    +
Sbjct: 694 LAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLMDKRRVKKEPGYSWIEVKNKT 753

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
           + F AG+ SHPL D I+  L+EL+  ++  GY PDT+ V HD+E ++KE  L  HSERLA
Sbjct: 754 YSFLAGDLSHPLSDHIYSKLSELNTRLRDVGYQPDTNYVFHDIEDEQKETILSHHSERLA 813

Query: 548 VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
           +A+GL+ ++P   L++VKNLRVCGDCH  +K++S + KR IVVRD+ R+HHFK G CSC 
Sbjct: 814 IAFGLIATLPEIPLQIVKNLRVCGDCHSFIKLVSLVEKRYIVVRDSNRFHHFKGGLCSCG 873

Query: 608 DFW 610
           D+W
Sbjct: 874 DYW 876



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 128/487 (26%), Positives = 218/487 (44%), Gaps = 88/487 (18%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VCA        + +H Q +K GL  +  + N+L+D Y K   V+    + +EM  RD 
Sbjct: 109 LSVCAGSFNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDV 168

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S+LT Y+      +   +F  ++ ++  +PD++  ++++ A  + GA  +G Q+HA
Sbjct: 169 VSWNSLLTGYSWNRFNDQVWELF-CLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHA 227

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V   F  + +V +SL+ M +K G+  +AR VFD+++ K+SVSW +M++ +  +G+  +
Sbjct: 228 LVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLE 287

Query: 190 AMEIF--------------------------EQAPVR-------------NLFLWTALVS 210
           A E F                          E   VR             N  + TAL+ 
Sbjct: 288 AFETFNNMQLAGAKPTHATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQNVLTALMV 347

Query: 211 GLVQSRNEIDAFYSFIEM--------------------------------RREGVDIVDP 238
            L + +   DAF  F  M                                RREGV   + 
Sbjct: 348 ALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVK-PNH 406

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
              S+I+       + E    IH  VI   YE    +  A++D + K  +I  A  +F  
Sbjct: 407 FTYSTILTVQHAVFISE----IHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFEL 462

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH-VGLVGK 357
           +  KDV++W++++ G AQ G+ EE   ++ ++   G+KPNE TF  +I AC+     V +
Sbjct: 463 IETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQ 522

Query: 358 GRKLFKSMIEDYGITPSLQHYTC----LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
           G++        Y I   L +  C    L+ L ++ G+++ A  + K    E D  +W ++
Sbjct: 523 GKQF-----HAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQK-ERDLVSWNSM 576

Query: 414 LSACKHH 420
           +S    H
Sbjct: 577 ISGYAQH 583



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 173/376 (46%), Gaps = 36/376 (9%)

Query: 55  QYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA 114
           ++A  L ++ P RD      +L  Y++ +  Q+ + +F + L    L PD +  + ++  
Sbjct: 53  RFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVS-LYRSGLSPDSYTMSCVLSV 111

Query: 115 C-GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS 173
           C GS   T +G+QVH   V         V +SLVDMY K                     
Sbjct: 112 CAGSFNGT-VGEQVHCQCVKCGLVHHLSVGNSLVDMYTK--------------------- 149

Query: 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233
                     +G  +D   +F++   R++  W +L++G   +R     +  F  M+ EG 
Sbjct: 150 ----------TGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGY 199

Query: 234 DIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
              D   +S+++ A AN   + +G QIH LV+ LG+E+   + N+++ M +K   +  A+
Sbjct: 200 R-PDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDAR 258

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
            +F  M  KD VSW S+I G   +GQ  E    ++ M  AG KP   TF  +I +C+ + 
Sbjct: 259 VVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLK 318

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
            +G  R L    ++  G++ +    T L+  L++   +D+A +L   M       +W A+
Sbjct: 319 ELGLVRVLHCKTLKS-GLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAM 377

Query: 414 LSACKHHRNTEMGTRV 429
           +S    + +T+    +
Sbjct: 378 ISGYLQNGDTDQAVNL 393


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 238/626 (38%), Positives = 354/626 (56%), Gaps = 61/626 (9%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL-----------PQKTIS 90
           N LI  Y K  +V  A    + MP+R+ VSW +++  Y Q  L           P+K + 
Sbjct: 82  NGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVV 141

Query: 91  IFSTMLA-------------LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
            ++ ML              L  + P   V A      G     RL +   A  +     
Sbjct: 142 SWTVMLGGLIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQEGRLAE---ARELFDEMP 198

Query: 138 DDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             +V+  ++++  Y + G  + AR +F+ +  KN VSWTAML  Y + GR ++A E+F+ 
Sbjct: 199 RRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDA 258

Query: 197 APV----------------------RNLF---------LWTALVSGLVQSRNEIDAFYSF 225
            PV                      R +F          W+A++    +   E++A   F
Sbjct: 259 MPVKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLF 318

Query: 226 IEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK 285
             M+REGV    P ++S ++  CA+ A L+ G+Q+H  ++   ++S +F+++ ++ MY K
Sbjct: 319 ALMQREGVQSNFPSLIS-VLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVK 377

Query: 286 CSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGL 345
           C D++ A+ IF R   KD+V W SII G AQHG  EE L ++ EM S+G+  + VTFVG+
Sbjct: 378 CGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGV 437

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP 405
           + ACS+ G V +G ++F+SM   Y + P  +HY C++DLL R+G +++A +LI+ MP E 
Sbjct: 438 LSACSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEA 497

Query: 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRK 465
           D   W ALL AC+ H N  +    A  LL L+P++   YILLSN+YAS   W  V+++R+
Sbjct: 498 DAIIWGALLGACRTHMNMNLAEVAAKKLLQLEPKNAGPYILLSNIYASKGRWGDVAELRR 557

Query: 466 LMSVMEVKKEPGYSYIEFGKGSHIFYAG-ETSHPLKDEIFELLTELDAEMKRRGYVPDTS 524
            M V +V K PG S+IE  K  H+F  G  T HP    I ++L +LD  ++  GY PD+S
Sbjct: 558 NMRVKKVSKSPGCSWIEVEKRVHMFTGGVSTKHPELSSIMKMLEKLDGMLREAGYYPDSS 617

Query: 525 SVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRIT 584
            VLHD++++EK R L  HSERLAVA+GLLK   G  +RV+KNLRVCGDCH  +K+I++IT
Sbjct: 618 FVLHDVDEEEKVRSLGHHSERLAVAFGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKIT 677

Query: 585 KREIVVRDATRYHHFKDGKCSCNDFW 610
            REI++RDA R+HHFKDG CSC D+W
Sbjct: 678 GREIILRDANRFHHFKDGFCSCRDYW 703



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 101/403 (25%), Positives = 171/403 (42%), Gaps = 75/403 (18%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+ I  Y +   ++ A  + +EMP +  VSW S++  Y Q N P++   +F  M      
Sbjct: 20  NSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM------ 73

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P+                                  + V  + L+  Y K  + + AR 
Sbjct: 74  -PER---------------------------------NTVSWNGLISGYVKNRMVSEARK 99

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR--NEI 219
            FD++  +N VSWTAM+  Y + G   +A  +F Q P +N+  WT ++ GL+Q R  +E 
Sbjct: 100 AFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEA 159

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL----VIALGYESCLFI 275
              +  + ++    D+V    +  I G C    + E  +    +    VI+       ++
Sbjct: 160 RGLFDIMPVK----DVVARTNM--ISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYV 213

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEM-VSAG 334
            N  VD+         A+ +F  M  K+ VSWT++++G  Q G+ EE   L+D M V A 
Sbjct: 214 QNGQVDV---------ARKLFEVMPEKNEVSWTAMLMGYTQGGRIEEASELFDAMPVKAV 264

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
           V  N      +I      G V K R++F  + E    T     ++ ++ +  R G   EA
Sbjct: 265 VACN-----AMILGFGQNGEVAKARQVFDQIREKDDGT-----WSAMIKVYERKGFEVEA 314

Query: 395 ENLIKAMPFE---PDEPTWAALLSACKHHRNTEMGTRVANHLL 434
            NL   M  E    + P+  ++LS C    + + G +V   L+
Sbjct: 315 LNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELV 357



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 121/266 (45%), Gaps = 26/266 (9%)

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           +  +S +  YA+ G   +AR VFD +  K  VSW +M++ Y ++ R ++A  +F++ P R
Sbjct: 17  IAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPER 76

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV----DIVDPLVLSSIVGACANFAVLEL 256
           N   W  L+SG V++R   +A  +F  M    V     +V   V   +V           
Sbjct: 77  NTVSWNGLISGYVKNRMVSEARKAFDTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMP 136

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
            K +    + LG                +   I  A+ +F  M  KDVV+ T++I G  Q
Sbjct: 137 EKNVVSWTVMLGG-------------LIQVRRIDEARGLFDIMPVKDVVARTNMISGYCQ 183

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
            G+  E   L+DEM     + N +++  +I      G V   RKLF+ M E   ++    
Sbjct: 184 EGRLAEARELFDEM----PRRNVISWTTMISGYVQNGQVDVARKLFEVMPEKNEVS---- 235

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMP 402
            +T +L   ++ G ++EA  L  AMP
Sbjct: 236 -WTAMLMGYTQGGRIEEASELFDAMP 260



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 112/244 (45%), Gaps = 19/244 (7%)

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
           ++++ + ++ YAR G+ + A  +F++ P + +  W ++V+G  Q+    +A Y F +M  
Sbjct: 16  AIAYNSQIARYARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKMPE 75

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290
                 + L    I G   N  V E  K    +      E  +    A+V  Y +   + 
Sbjct: 76  RNTVSWNGL----ISGYVKNRMVSEARKAFDTMP-----ERNVVSWTAMVRGYVQEGLVS 126

Query: 291 AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350
            A+ +F +M  K+VVSWT ++ G  Q  + +E   L+D M    V    V    +I    
Sbjct: 127 EAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARGLFDIMPVKDV----VARTNMISGYC 182

Query: 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTW 410
             G + + R+LF  M     I+     +T ++    ++G +D A  L + MP E +E +W
Sbjct: 183 QEGRLAEARELFDEMPRRNVIS-----WTTMISGYVQNGQVDVARKLFEVMP-EKNEVSW 236

Query: 411 AALL 414
            A+L
Sbjct: 237 TAML 240



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 82/176 (46%), Gaps = 9/176 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VCA        + +HA+++K        + + LI  Y KC  +  A  + +    +D 
Sbjct: 337 LSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDI 396

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV-- 127
           V W SI+T Y Q  L ++ + +F  M +   +  D   F  ++ AC   G  + G ++  
Sbjct: 397 VMWNSIITGYAQHGLVEEALQVFHEMCS-SGMATDGVTFVGVLSACSYTGKVKEGLEIFE 455

Query: 128 --HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
              + +++ P  +     + +VD+  + GL N+A  +   + ++ +++ W A+L A
Sbjct: 456 SMKSKYLVEPKTEH---YACMVDLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGA 508


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  436 bits (1122), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/635 (36%), Positives = 345/635 (54%), Gaps = 67/635 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLH--------------QYGPLPNT------------ 43
            + C + + A   K +HA ++KLGL               Q G L N             
Sbjct: 135 FKSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDA 194

Query: 44  -----LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                LI  Y     +  A  L +E+P RD VSW ++++ Y Q+   ++ ++ F  M   
Sbjct: 195 VSFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRA 254

Query: 99  DKLQPDHFVFASLVKACGSLGAT-RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
            K+ P+     S++ AC   G++ +LG  V +         +  + + L+DMY KCG   
Sbjct: 255 -KVTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCG--- 310

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
                                         ++A  +FE+   +N+  W  ++ G      
Sbjct: 311 ----------------------------DLEEASNLFEKIQDKNVVSWNVMIGGYTHMSC 342

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA--LGYESCLFI 275
             +A   F  M +  +D  D   LS I+ ACAN   L+LGK +H  V       ++ + +
Sbjct: 343 YKEALGLFRRMMQSNIDPNDVTFLS-ILPACANLGALDLGKWVHAYVDKNMKSMKNTVAL 401

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
             +++DMYAKC D+  AK IF  M  K + +W ++I G A HG  +  L L+  M S G 
Sbjct: 402 WTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGF 461

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
            P+++TFVG++ AC H GL+  GR+ F SMI+DY ++P L HY C++DL  R+G  DEAE
Sbjct: 462 VPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAE 521

Query: 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
            L+K M  +PD   W +LL AC+ HR  E+   VA HL  L+PE+PS+Y+LLSN+YA A 
Sbjct: 522 TLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENPSAYVLLSNIYAGAG 581

Query: 456 MWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK 515
            W+ V+K+R  ++   +KK PG S IE     H F  G+  HP  +EI+++L E+D  ++
Sbjct: 582 RWEDVAKIRTRLNDNRMKKVPGCSSIEVDSVVHEFLVGDKVHPQSNEIYKMLDEIDMRLE 641

Query: 516 RRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHI 575
           + G+VPDTS VL+DM+++ KE  L  HSE+LA+A+GL+ + PGT +R++KNLRVCG+CH 
Sbjct: 642 KAGFVPDTSEVLYDMDEEWKEGVLSHHSEKLAIAFGLISTKPGTTIRIMKNLRVCGNCHS 701

Query: 576 VMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             K+IS+I  REI+ RD  R+HHFKDG CSC D+W
Sbjct: 702 ATKLISKIFNREIIARDRNRFHHFKDGSCSCKDYW 736



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 148/530 (27%), Positives = 260/530 (49%), Gaps = 48/530 (9%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLID--AYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           T+K +H+QIIK GLH      + LI+  A      + YA  L + +   +HV W  ++  
Sbjct: 43  TLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRG 102

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
            + +  P   +  +  M++    +P+ + F S+ K+C  +     GKQVHA  +      
Sbjct: 103 LSSSESPFLALEYYVHMIS-SGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVLKLGLEH 161

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           +  V +SL++MYA+ G   NAR VFD   ++++VS+TA+++ YA  G   +A E+F++ P
Sbjct: 162 NAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDEIP 221

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA-NFAVLELG 257
           VR++  W A++SG  QS    +A   F EMRR  V   +   + S++ ACA + + L+LG
Sbjct: 222 VRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKV-TPNVSTMLSVLSACAQSGSSLQLG 280

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
             +   +   G  S + + N ++DMY KC D+  A ++F +++ K+VVSW  +I G    
Sbjct: 281 NWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHM 340

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR-----------------K 360
              +E L L+  M+ + + PN+VTF+ ++ AC+++G +  G+                  
Sbjct: 341 SCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTVA 400

Query: 361 LFKSMIEDYGI---------------TPSLQHYTCLLDLLSRSGHLDEAENLIKAMP--- 402
           L+ S+I+ Y                 T SL  +  ++   +  GH D A  L   M    
Sbjct: 401 LWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEG 460

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRVANHLLS---LKPEDPSSYILLSNVYASAAMWQH 459
           F PD+ T+  +L+ACKH     +G R  + ++    + P+ P  Y  + +++  A ++  
Sbjct: 461 FVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLP-HYGCMIDLFGRAGLFD- 518

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTE 509
             +   L+  ME+K + G  +        I    E +  +   +FEL  E
Sbjct: 519 --EAETLVKNMEMKPD-GAIWCSLLGACRIHRRIELAESVAKHLFELEPE 565



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 81/200 (40%), Gaps = 33/200 (16%)

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC--SDIIAAKDIFGRMRRKDVVS 306
           +N   L+  KQIH  +I  G  +  F  + +++  A     D+  A  +F  +R  + V 
Sbjct: 36  SNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVI 95

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK------ 360
           W  +I G +        L  Y  M+S+G +PNE TF  +  +C+ +    +G++      
Sbjct: 96  WNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHVL 155

Query: 361 ---------LFKSMIEDYGITPSLQH---------------YTCLLDLLSRSGHLDEAEN 396
                    +  S+I  Y     L +               +T L+   +  G LDEA  
Sbjct: 156 KLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARE 215

Query: 397 LIKAMPFEPDEPTWAALLSA 416
           L   +P   D  +W A++S 
Sbjct: 216 LFDEIPVR-DVVSWNAMISG 234


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/588 (37%), Positives = 334/588 (56%), Gaps = 32/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H    KLG        NTL++ Y  C  +  A  + ++M  +  VSWA+++  + Q 
Sbjct: 105 KQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQW 164

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           + P + + +F  M+  + ++P+     +++ AC       + K++H       F    V+
Sbjct: 165 DQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVL 224

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            + L+D+Y KCG    AR                               ++F++A  +NL
Sbjct: 225 NTVLMDVYCKCGCVQLAR-------------------------------DLFDKAQEKNL 253

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
           F W  +++G V+  N  +A   F EM+ +G+   D + ++S++ AC +   LELGK +H 
Sbjct: 254 FSWNIMINGHVEDSNYEEALLLFREMQTKGIK-GDKVTMASLLLACTHLGALELGKWLHA 312

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +     +  + +  A+VDMYAKC  I  A  +F  M  KDV++WT++I+G A  GQAE 
Sbjct: 313 YIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAEN 372

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L  +DEM   GVKP+ +TFVG++ ACSH G V +G   F SM + YGI P+++HY  L+
Sbjct: 373 ALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDTYGIQPTIEHYGGLV 432

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+L R+G + EAE LIK+MP  PD+     LL AC+ H N E   R A  LL + P    
Sbjct: 433 DILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSG 492

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y+LLSN+Y S+  W+   + R+LM+   ++K PG S IE     H F  G++SH    E
Sbjct: 493 TYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSE 552

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I E+L ++ +++K  GYVPD S VL DM ++EKE +L  HSE+LA+A+GLL +  GT +R
Sbjct: 553 INEMLEDMISKLKNAGYVPDKSEVLFDMAEEEKETELSLHSEKLAIAFGLLSTSVGTPIR 612

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           VVKNLR+C DCH   K+IS++  REI+VRD  R+HHFKDG CSC  FW
Sbjct: 613 VVKNLRICSDCHSATKLISKLYNREIIVRDRNRFHHFKDGTCSCRGFW 660



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 112/409 (27%), Positives = 199/409 (48%), Gaps = 48/409 (11%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL-----VQYAHHLLEEMPQRDHVSWASIL 76
           +K +HAQ+++ GL  + P   + I A+  C L     +QYA  +  ++P     +  SI+
Sbjct: 4   LKQIHAQMLRTGLF-FDPFTASKIVAF--CSLQESGSLQYARLVFSQIPNPTSYTCNSII 60

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
                 NL Q+ +  +  M+ +  L PD + F SL K+C +   +  GKQ+H       F
Sbjct: 61  RGCTDKNLHQEALLFYQEMM-VQGLIPDRYTFPSLFKSCRN---SSEGKQIHCHSTKLGF 116

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             D   +++L++MY+ CG   +AR VFD ++ K  VSW  M+  +A+  +  +A+ +F++
Sbjct: 117 ASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDR 176

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
                                          M+ E V   + + L +++ ACA    L +
Sbjct: 177 M------------------------------MKSENVK-PNEVTLVNVLTACARARDLAM 205

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
            K+IH  +   G+   + ++  ++D+Y KC  +  A+D+F + + K++ SW  +I G  +
Sbjct: 206 VKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVE 265

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
               EE L L+ EM + G+K ++VT   L+ AC+H+G +  G K   + I+   I   + 
Sbjct: 266 DSNYEEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELG-KWLHAYIKKQRIDVDVA 324

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL---LSACKHHRN 422
             T L+D+ ++ G ++ A  +   MP E D  TW AL   L+ C    N
Sbjct: 325 LGTALVDMYAKCGSIETAIQVFHEMP-EKDVMTWTALILGLAMCGQAEN 372



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 105/194 (54%), Gaps = 3/194 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CAR +    VK +H  I + G  ++  L   L+D Y KC  VQ A  L ++  +++ 
Sbjct: 194 LTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNL 253

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW  ++  + + +  ++ + +F  M     ++ D    ASL+ AC  LGA  LGK +HA
Sbjct: 254 FSWNIMINGHVEDSNYEEALLLFREM-QTKGIKGDKVTMASLLLACTHLGALELGKWLHA 312

Query: 130 CFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
            ++     D DV + ++LVDMYAKCG    A  VF  +  K+ ++WTA++   A  G+ +
Sbjct: 313 -YIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAE 371

Query: 189 DAMEIFEQAPVRNL 202
           +A++ F++  ++ +
Sbjct: 372 NALQYFDEMHIKGV 385


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/601 (36%), Positives = 338/601 (56%), Gaps = 34/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C   ++ +  + +HA I++        + NTL++ Y KC  ++ A  + E+MPQRD 
Sbjct: 67  LKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDF 126

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W ++++ Y+Q + P   +  F+ ML      P+ F  +S++KA  +      G Q+H 
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFG-YSPNEFTLSSVIKAAAAERRGCCGHQLHG 185

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 FC              KCG  +N                +A+L  Y R G   D
Sbjct: 186 ------FC-------------VKCGFDSNVHVG------------SALLDLYTRYGLMDD 214

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F+    RN   W AL++G  +      A   F  M R+G         +S+ GAC+
Sbjct: 215 AQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFR-PSHFSYASLFGACS 273

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +   LE GK +H  +I  G +   F  N ++DMYAK   I  A+ IF R+ ++DVVSW S
Sbjct: 274 STGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNS 333

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           ++   AQHG  +E +  ++EM   G++PNE++F+ ++ ACSH GL+ +G   ++ M +D 
Sbjct: 334 LLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD- 392

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI P   HY  ++DLL R+G L+ A   I+ MP EP    W ALL+AC+ H+NTE+G   
Sbjct: 393 GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYA 452

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A H+  L P+DP  +++L N+YAS   W   ++VRK M    VKKEP  S++E     H+
Sbjct: 453 AEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHM 512

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F A +  HP ++EI     E+ A++K  GYVPDTS V+  ++Q+E+E  L +HSE++A+A
Sbjct: 513 FVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALA 572

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + LL + PG+ + + KN+RVCGDCH  +K+ S++  REI+VRD  R+HHFKDG CSC D+
Sbjct: 573 FALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDGNCSCKDY 632

Query: 610 W 610
           W
Sbjct: 633 W 633



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 152/317 (47%), Gaps = 34/317 (10%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D   + +L+K C        G+ VHA  + S F  D V+ ++L++MYAKCG    AR VF
Sbjct: 59  DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           + +  ++ V+WT ++S Y++  R  DA+  F Q                           
Sbjct: 119 EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQ--------------------------- 151

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
               M R G    +   LSS++ A A       G Q+HG  +  G++S + + +A++D+Y
Sbjct: 152 ----MLRFGYS-PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLY 206

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
            +   +  A+ +F  +  ++ VSW ++I G A+    E+ L L+  M+  G +P+  ++ 
Sbjct: 207 TRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYA 266

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            L  ACS  G + +G+ +   MI+      +    T LLD+ ++SG + +A  +   +  
Sbjct: 267 SLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT-LLDMYAKSGSIHDARKIFDRLA- 324

Query: 404 EPDEPTWAALLSACKHH 420
           + D  +W +LL+A   H
Sbjct: 325 KRDVVSWNSLLTAYAQH 341



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 101/199 (50%), Gaps = 2/199 (1%)

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
            D    ++++  C  F +L  G+ +H  ++   +   + + N +++MYAKC  +  A+ +
Sbjct: 58  ADRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKV 117

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
           F +M ++D V+WT++I G +QH +  + L  +++M+  G  PNE T   +I A +     
Sbjct: 118 FEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRG 177

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
             G +L    ++  G   ++   + LLDL +R G +D+A+ +  A+    D  +W AL++
Sbjct: 178 CCGHQLHGFCVK-CGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRND-VSWNALIA 235

Query: 416 ACKHHRNTEMGTRVANHLL 434
                  TE    +   +L
Sbjct: 236 GHARRSGTEKALELFQGML 254


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  436 bits (1121), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/605 (36%), Positives = 347/605 (57%), Gaps = 38/605 (6%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   ++ C  H      K +H  I   G H    L N LI+ Y K +L++ A  L ++MP
Sbjct: 288 YSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLEEAQVLFDKMP 347

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +R+ VSW ++++AY+ A L  + + + + M   D + P+ F F+S+++AC  L      K
Sbjct: 348 ERNVVSWTTMISAYSNAQLNDRAMRLLAFMFR-DGVMPNMFTFSSVLRACERLYDL---K 403

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q+H+  +      D  V+S+L+D+Y+K                                G
Sbjct: 404 QLHSWIMKVGLESDVFVRSALIDVYSKM-------------------------------G 432

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
              +A+++F +    +  +W ++++   Q  +  +A + +  MRR G    D   L+S++
Sbjct: 433 ELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFP-ADQSTLTSVL 491

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            AC + ++LELG+Q H  V  L ++  L ++NA++DMY KC  +  AK IF RM +KDV+
Sbjct: 492 RACTSLSLLELGRQAH--VHVLKFDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVI 549

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SW+++I G AQ+G + E L L++ M   G KPN +T +G+++ACSH GLV +G   F+SM
Sbjct: 550 SWSTMIAGLAQNGFSMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSM 609

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
              YGI P  +HY C+LDLL R+  LD+   LI  M  EPD  TW  LL AC+  +N ++
Sbjct: 610 NNLYGIDPGREHYGCMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDL 669

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
            T  A  +L L P+D  +Y+LLSN+YA +  W  V++VR+ M    ++KEPG S+IE  K
Sbjct: 670 ATYAAKEILKLDPQDTGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWIEVNK 729

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H F  G+ SHP  DEI   L +    +   GYVPDT+ VL D+E +++E  L +HSE+
Sbjct: 730 QIHAFILGDKSHPQIDEINRQLNQFICRLAGAGYVPDTNFVLQDLEGEQREDSLRYHSEK 789

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+ +G++       +R+ KNL++CGDCH   K+I+ + +R IV+RD  RYHHF+DG CS
Sbjct: 790 LAIVFGIMSFPKEKTIRIWKNLKICGDCHKFAKLIAELEQRHIVIRDPIRYHHFQDGVCS 849

Query: 606 CNDFW 610
           C D+W
Sbjct: 850 CGDYW 854



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 149/329 (45%), Gaps = 44/329 (13%)

Query: 93  STMLALDKLQ-----PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLV 147
           S M  LD ++      D   ++ L+K C + GA R GK+VH     + +     + + L+
Sbjct: 268 SAMHVLDSMERRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILI 327

Query: 148 DMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTA 207
           +MY K  L   A+ +FD +                               P RN+  WT 
Sbjct: 328 NMYVKFNLLEEAQVLFDKM-------------------------------PERNVVSWTT 356

Query: 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267
           ++S    ++    A      M R+GV + +    SS++ AC     L   KQ+H  ++ +
Sbjct: 357 MISAYSNAQLNDRAMRLLAFMFRDGV-MPNMFTFSSVLRACERLYDL---KQLHSWIMKV 412

Query: 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327
           G ES +F+ +A++D+Y+K  +++ A  +F  M   D V W SII   AQH   +E L LY
Sbjct: 413 GLESDVFVRSALIDVYSKMGELLEALKVFREMMTGDSVVWNSIIAAFAQHSDGDEALHLY 472

Query: 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
             M   G   ++ T   ++ AC+ + L+  GR+    +++       L     LLD+  +
Sbjct: 473 KSMRRVGFPADQSTLTSVLRACTSLSLLELGRQAHVHVLK---FDQDLILNNALLDMYCK 529

Query: 388 SGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G L++A+ +   M  + D  +W+ +++ 
Sbjct: 530 CGSLEDAKFIFNRMA-KKDVISWSTMIAG 557


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/605 (35%), Positives = 340/605 (56%), Gaps = 34/605 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   +  CAR++     + +HA +          L N+LI  Y KC  V  A  + + MP
Sbjct: 67  YHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGMP 126

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            RD  SW S++  Y Q ++P + + +   ML   + +P+ F FASL+KA G+  ++ +G+
Sbjct: 127 ARDMCSWTSLIAGYAQNDMPDEALGLLPGMLR-GRFKPNGFTFASLLKAAGASASSGIGE 185

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q+HA  V   + DD  V S+L+DMYA                               R G
Sbjct: 186 QIHALTVKYDWHDDVYVGSALLDMYA-------------------------------RCG 214

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
           R   A+ +F+Q   +N   W AL++G  +  +       F EM+R G +       SS+ 
Sbjct: 215 RMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATH-FTYSSVF 273

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            A A    LE GK +H  +I  G     F+ N I+DMYAK   +I A+ +F R+ +KDVV
Sbjct: 274 SAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVV 333

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +W S++   AQ+G   E +  ++EM   GV  N++TF+ ++ ACSH GLV +G++ F  M
Sbjct: 334 TWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF-DM 392

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
           +++Y + P + HY  ++DLL R+G L++A   I  MP +P    W ALL +C+ H+N ++
Sbjct: 393 MKEYNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKI 452

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G   A+H+  L P+D    +LL N+YAS   W   ++VRK+M    VKKEP  S++E   
Sbjct: 453 GQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIEN 512

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H+F A + +HP  +EI++   E+  ++++ GYVP+T  VL  ++++E++ +L +HSE+
Sbjct: 513 SVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHSEK 572

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           +A+A+ L+    G  +R++KN+R+CGDCH   + IS++ KREIVVRD  R+HHF  G CS
Sbjct: 573 IALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFKREIVVRDTNRFHHFSSGSCS 632

Query: 606 CNDFW 610
           C D+W
Sbjct: 633 CGDYW 637



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 151/310 (48%), Gaps = 34/310 (10%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
           ++ SL+ AC    +    + +HA    S F     + +SL+ +Y KCG   +AR VFD +
Sbjct: 66  LYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADARRVFDGM 125

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
             ++  SWT++++ YA++    +A+                L+ G+++ R + + F    
Sbjct: 126 PARDMCSWTSLIAGYAQNDMPDEAL---------------GLLPGMLRGRFKPNGF---- 166

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
                          +S++ A    A   +G+QIH L +   +   +++ +A++DMYA+C
Sbjct: 167 -------------TFASLLKAAGASASSGIGEQIHALTVKYDWHDDVYVGSALLDMYARC 213

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             +  A  +F ++  K+ VSW ++I G A+ G  E TL ++ EM   G +    T+  + 
Sbjct: 214 GRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVF 273

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            A + +G + +G+ +   MI+  G   S      +LD+ ++SG + +A  +   +  + D
Sbjct: 274 SAIAGIGALEQGKWVHAHMIKS-GERLSAFVGNTILDMYAKSGSMIDARKVFDRVD-KKD 331

Query: 407 EPTWAALLSA 416
             TW ++L+A
Sbjct: 332 VVTWNSMLTA 341



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 9/194 (4%)

Query: 230 REGVDIVD-------PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
           R+ +D VD       P +  S++ ACA +  L+  + IH  +    +   +F+ N+++ +
Sbjct: 49  RDTLDSVDARELAATPRLYHSLITACARYRSLDDARAIHAHLAGSQFAGSVFLDNSLIHL 108

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           Y KC  +  A+ +F  M  +D+ SWTS+I G AQ+   +E L L   M+    KPN  TF
Sbjct: 109 YCKCGAVADARRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTF 168

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
             L+ A       G G ++  ++   Y     +   + LLD+ +R G +D A  +   + 
Sbjct: 169 ASLLKAAGASASSGIGEQI-HALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLE 227

Query: 403 FEPDEPTWAALLSA 416
              +  +W AL++ 
Sbjct: 228 -SKNGVSWNALIAG 240


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 228/659 (34%), Positives = 357/659 (54%), Gaps = 74/659 (11%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  I KLG + Y  + N+LI  Y     V+ A  L +E+  RD +SW S+++ Y + 
Sbjct: 271 RQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKN 330

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV- 141
            L  + I IF  ML    +  D     ++  AC ++G   LGK +H+  + +   D +V 
Sbjct: 331 GLDDRGIEIFIKMLVFG-VDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVR 389

Query: 142 VKSSLVDMYAKC-------------------------------GLPNNARAVFDSIKLK- 169
             ++L+DMY+KC                               GL + A  +FD +K + 
Sbjct: 390 FNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRG 449

Query: 170 --------------------------------------NSVSWTAMLSAYARSGRKKDAM 191
                                                 NS    A+   YA+ G  KDA 
Sbjct: 450 VVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAH 509

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
           ++F     +++  W  ++ G  ++    +A   F EM+RE     D   ++ I+ ACA+ 
Sbjct: 510 DVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRESKP--DGTTVACILPACASL 567

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
           A L+ G++IHG  +  GY    +++NA+VDMY KC  ++ A+ +F  +  KD+VSWT +I
Sbjct: 568 AALDKGREIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMI 627

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G   HG   E +  +++M   G++P+EV+F+ ++YACSH GL+ +G K+F  M ++  I
Sbjct: 628 AGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHSGLLDEGWKIFNIMKKECQI 687

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
            P+L+HY C++DLL+R+G+L +A   IKAMP +PD   W ALL  C+ H + ++  +VA 
Sbjct: 688 EPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGALLCGCRIHHDVKLAEKVAE 747

Query: 432 HLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFY 491
            +  L+PE+   Y+LL+N+YA A  W+ V K+RK +    +KK PG S+IE     +IF 
Sbjct: 748 RIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGLKKNPGCSWIEIKGKINIFV 807

Query: 492 AGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYG 551
           AG+ S P   +I  LL  L ++MK  GY P T+  L + +++EKE  L  HSE+LA+A+G
Sbjct: 808 AGDCSKPQAKKIELLLKRLRSKMKEEGYSPKTAYALLNADEREKEVALCGHSEKLAMAFG 867

Query: 552 LLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +L   PG  +RV KNLRVCGDCH + K +S+   REI++RD++R+HHFKDG CSC  +W
Sbjct: 868 MLNLPPGKTIRVTKNLRVCGDCHEMAKFMSKSASREIILRDSSRFHHFKDGSCSCRGYW 926



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 208/456 (45%), Gaps = 37/456 (8%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
           +  Y   L++CA  +     + + + I   G+   G L   L+  Y KC  ++    + +
Sbjct: 150 LGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFD 209

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
           ++ +     W  +++ Y+ +    ++I++F  ML L  ++P+ + F+S++K   ++    
Sbjct: 210 KLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELG-IKPNSYTFSSILKCFAAVARVE 268

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
            G+QVH       F   + V +SL+  Y        A+ +FD +  ++ +SW +M+S Y 
Sbjct: 269 EGRQVHGLICKLGFNSYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYV 328

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           ++G     +EI                               FI+M   GVDI D   + 
Sbjct: 329 KNGLDDRGIEI-------------------------------FIKMLVFGVDI-DLATMV 356

Query: 243 SIVGACANFAVLELGKQIHGLVI-ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           ++  ACAN   L LGK +H   I A   +  +  +N ++DMY+KC D+ +A  +F RM  
Sbjct: 357 NVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDE 416

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           K VVSWTS+I G  + G ++  + L+DEM S GV P+      ++ AC+  G +  G K+
Sbjct: 417 KTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSG-KI 475

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA-CKHH 420
               I +  +  +      L D+ ++ G + +A ++   M  + D  +W  ++    K+ 
Sbjct: 476 VHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMK-KKDVISWNTMIGGYTKNS 534

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
              E  T  A      KP+  +   +L    + AA+
Sbjct: 535 LPNEALTLFAEMQRESKPDGTTVACILPACASLAAL 570



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 145/314 (46%), Gaps = 44/314 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA +    + K +H  I +  L     + N L D Y KC  ++ AH +   M ++D 
Sbjct: 461 LNACAINGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDV 520

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW +++  Y + +LP + +++F+ M    K  PD    A ++ AC SL A   G+++H 
Sbjct: 521 ISWNTMIGGYTKNSLPNEALTLFAEMQRESK--PDGTTVACILPACASLAALDKGREIHG 578

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + + + +D  V +++VDMY KCGL   AR++FD I  K+ VSWT M++ Y   G   +
Sbjct: 579 YALRNGYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSE 638

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+  F Q                               MR  G++  D +   SI+ AC+
Sbjct: 639 AINTFNQ-------------------------------MRMTGIE-PDEVSFISILYACS 666

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISN-----AIVDMYAKCSDIIAAKDIFGRMRRK-D 303
           +  +L+ G +I  ++     + C    N      +VD+ A+  +++ A      M  K D
Sbjct: 667 HSGLLDEGWKIFNIM----KKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPD 722

Query: 304 VVSWTSIIVGTAQH 317
              W +++ G   H
Sbjct: 723 ATIWGALLCGCRIH 736



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/313 (24%), Positives = 142/313 (45%), Gaps = 33/313 (10%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D   + S+++ C    + R G++V +    S    D ++   LV MY KCG     R VF
Sbjct: 149 DLGAYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVF 208

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           D  KL  S                              +FLW  ++S    S N  ++  
Sbjct: 209 D--KLSES-----------------------------KIFLWNLMISEYSGSGNYGESIN 237

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            F +M   G+   +    SSI+   A  A +E G+Q+HGL+  LG+ S   + N+++  Y
Sbjct: 238 LFKQMLELGIK-PNSYTFSSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFY 296

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
                +  A+ +F  +  +DV+SW S+I G  ++G  +  + ++ +M+  GV  +  T V
Sbjct: 297 FVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMV 356

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            +  AC+++G +  G+ L    I+   +   ++    LLD+ S+ G L+ A  + + M  
Sbjct: 357 NVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMD- 415

Query: 404 EPDEPTWAALLSA 416
           E    +W ++++ 
Sbjct: 416 EKTVVSWTSMITG 428


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/605 (36%), Positives = 342/605 (56%), Gaps = 38/605 (6%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+ AY K   +Q      + MP RD VS+ + +  ++  + PQ+++ +F  M   +  
Sbjct: 93  NALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRM-QREGF 151

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +P  +   S++ A   L   R GKQ+H   ++  F  +  + ++L DMYAKCG    AR 
Sbjct: 152 EPTEYTIVSILNASAQLSDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARW 211

Query: 162 VFDSIKLKNSVSWTAMLSAYARSG-----------------------------------R 186
           +FD +  KN VSW  M+S YA++G                                   R
Sbjct: 212 LFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGR 271

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
             +A  +F +   +++  WTA++ G  ++  E DA   F EM  E ++  D   LSS+V 
Sbjct: 272 VDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIE-PDSYTLSSVVS 330

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           +CA  A L  G+ +HG  I  G  + L +S+A++DMY+KC  I  A+ +F  M  ++VVS
Sbjct: 331 SCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVS 390

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W ++IVG AQ+G  ++ L L++ M+    KP+ VTF+G++ AC H   + +G++ F S+ 
Sbjct: 391 WNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSIT 450

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             +G+TP+L HY C+++LL R+G +++A  LIK M  +PD   W+ LLS C    +    
Sbjct: 451 NQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNA 510

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
              A HL  L P     YI+LSN+YAS   W+ V+ VR LM    VKK  G+S+IE    
Sbjct: 511 EVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNE 570

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            H F + + +HP  ++I+E L  L  +++  G+ P+T+ VLHD+ + EK + + +HSE+L
Sbjct: 571 VHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKL 630

Query: 547 AVAYGLLKSVPG-TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           A+A+GL+K   G + +R++KN+R+C DCH  MK  SRI  R+I++RD+ R+HHF  GKCS
Sbjct: 631 ALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCS 690

Query: 606 CNDFW 610
           CND W
Sbjct: 691 CNDNW 695



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 155/282 (54%), Gaps = 9/282 (3%)

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  + + L+ +YAK G   +A+ +FD +  ++  SW A+LSAYA+SG  ++    F++ P
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            R+   +   ++G   +    ++   F  M+REG +  +  ++ SI+ A A  + L  GK
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIV-SILNASAQLSDLRYGK 175

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           QIHG +I   +   +FI NA+ DMYAKC +I  A+ +F  + +K++VSW  +I G A++G
Sbjct: 176 QIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNG 235

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
           Q E+ + L  +M  +G  P++VT   +I A    G V + R++F    E       +  +
Sbjct: 236 QPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKE-----KDIVCW 290

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPF---EPDEPTWAALLSAC 417
           T ++   +++G  ++A  L   M     EPD  T ++++S+C
Sbjct: 291 TAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSC 332



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H + I  GL+    + + LID Y KC  +  A  +   MP R+ VSW +++    Q 
Sbjct: 342 QAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQN 401

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115
              +  + +F  ML   K +PD+  F  ++ AC
Sbjct: 402 GHDKDALELFENMLQ-QKFKPDNVTFIGILSAC 433


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/573 (38%), Positives = 344/573 (60%), Gaps = 17/573 (2%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISI--FSTMLALDKLQPDHFVFASL 111
           + YAH +  +MPQR+  SW +I+  +++++  +  I+I  F  M++ + ++P+ F F S+
Sbjct: 75  LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSV 134

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF-------D 164
           +KAC   G  + GKQ+H   +   F  D+ V S+LV MY  CG   +AR +F       D
Sbjct: 135 LKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKD 194

Query: 165 SIKLKNS-------VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
            + + +        V W  M+  Y R G  K A  +F++   R++  W  ++SG   +  
Sbjct: 195 MVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGF 254

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             DA   F EM++  +   + + L S++ A +    LELG+ +H      G      + +
Sbjct: 255 FKDAVEVFREMKKGDIR-PNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGS 313

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           A++DMY+KC  I  A  +F R+ R++V++W+++I G A HGQA + +  + +M  AGV+P
Sbjct: 314 ALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRP 373

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           ++V ++ L+ ACSH GLV +GR+ F  M+   G+ P ++HY C++DLL RSG LDEAE  
Sbjct: 374 SDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEF 433

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           I  MP +PD+  W ALL AC+   N EMG RVAN L+ + P D  +Y+ LSN+YAS   W
Sbjct: 434 ILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNW 493

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
             VS++R  M   +++K+PG S I+     H F   + SHP   EI  +L E+  +++  
Sbjct: 494 SEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLA 553

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GY P T+ VL ++E+++KE  L +HSE++A A+GL+ + PG  +R+VKNLR+C DCH  +
Sbjct: 554 GYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSI 613

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K+IS++ KR+I VRD  R+HHF+DG CSC D+W
Sbjct: 614 KLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 646



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 148/302 (49%), Gaps = 40/302 (13%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L N +ID Y +    + A  L ++M QR  VSW ++++ Y+     +  + +F  M   D
Sbjct: 210 LWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGD 269

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            ++P++    S++ A   LG+  LG+ +H     S    DDV+ S+L+DMY+KCG+   A
Sbjct: 270 -IRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKA 328

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF---EQAPVRN-----LFLWTALV-S 210
             VF+ +  +N ++W+AM++ +A  G+  DA++ F    QA VR      + L TA    
Sbjct: 329 IHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHG 388

Query: 211 GLVQSRNE-------IDAFYSFIEMRREGVDIV--------------------DPLVLSS 243
           GLV+           +D     IE     VD++                    D ++  +
Sbjct: 389 GLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKA 448

Query: 244 IVGACANFAVLELGKQIHGLVIAL-GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           ++GAC     +E+GK++  +++ +  ++S  ++  A+ +MYA   +     ++  RM+ K
Sbjct: 449 LLGACRMQGNVEMGKRVANILMDMVPHDSGAYV--ALSNMYASQGNWSEVSEMRLRMKEK 506

Query: 303 DV 304
           D+
Sbjct: 507 DI 508


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  436 bits (1120), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/595 (37%), Positives = 348/595 (58%), Gaps = 22/595 (3%)

Query: 23  KTLHAQIIKLG-LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           K +HA +++   L +   + + L+D Y  C  V+    + + +  R    W ++++ Y +
Sbjct: 317 KEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYAR 376

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
             L +K + +F  M+ +  L P+    AS++ AC    A    + +H   V   F +D  
Sbjct: 377 NGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKLGFKEDRY 436

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V+++L+DMY++ G  + +  +FDS+++++ VSW  M++ Y  SGR  +A+ +  +     
Sbjct: 437 VQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVLLHE----- 491

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                     + +  N  D      +  + G    + + L +++  CA  A +  GK+IH
Sbjct: 492 ----------MQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAALAAIAKGKEIH 541

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
              I     S + + +A+VDMYAKC  +  ++ +F  M  K+V++W  +I+    HG+ E
Sbjct: 542 AYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGE 601

Query: 322 ETLALYDEMVS-AG----VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           E L L+  MV+ AG     KPNEVTF+ +  ACSH GL+ +G  LF  M  D+G+ P+  
Sbjct: 602 EALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSD 661

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDE-PTWAALLSACKHHRNTEMGTRVANHLLS 435
           HY C++DLL R+G L+EA  L+  MP E D+   W++LL AC+ H+N E+G   A +LL 
Sbjct: 662 HYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLH 721

Query: 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGET 495
           L+P   S Y+LLSN+Y+SA +W    +VRK M  M VKKEPG S+IEF    H F AG+ 
Sbjct: 722 LEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIEFRDEVHKFMAGDV 781

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKS 555
           SHP  +++   L  L  +M++ GYVPDTS VLH++++ EKE  L  HSE+LA+A+G+L +
Sbjct: 782 SHPQSEQLHGFLETLSEKMRKEGYVPDTSCVLHNVDEDEKENLLCGHSEKLAIAFGILNT 841

Query: 556 VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            PGT +RV KNLRVC DCH   K IS+I +REI+VRD  R+HHFK+G CSC D+W
Sbjct: 842 PPGTTIRVAKNLRVCNDCHAATKFISKIMEREIIVRDVRRFHHFKEGTCSCGDYW 896



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 108/410 (26%), Positives = 195/410 (47%), Gaps = 58/410 (14%)

Query: 21  TVKTLHAQIIKLGLHQYGP----LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASIL 76
           T + +HA  +K G   YG     + NTL++ YGKC  +     + + +  RD VSW S +
Sbjct: 110 TGEQIHAAAVKFG---YGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFI 166

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG---ATRLGKQVHACFVL 133
            A  +    ++ +  F  M  ++ ++   F   S+  AC +LG     RLGKQ+H  + L
Sbjct: 167 AALCRFEKWEQALEAFRAM-QMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHG-YSL 224

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
                     ++L+ MYAK G  ++++A+F+S   ++ VSW  M+S++++S R  +A+  
Sbjct: 225 RVGDQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAF 284

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
           F                                 M  EGV++ D + ++S++ AC++   
Sbjct: 285 FRL-------------------------------MVLEGVEL-DGVTIASVLPACSHLER 312

Query: 254 LELGKQIHGLVIALG--YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
           L++GK+IH  V+      E+  F+ +A+VDMY  C  + + + +F  +  + +  W ++I
Sbjct: 313 LDVGKEIHAYVLRNNDLIENS-FVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMI 371

Query: 312 VGTAQHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370
            G A++G  E+ L L+ EM+  AG+ PN  T   ++ AC H           K  I  Y 
Sbjct: 372 SGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSN-----KESIHGYA 426

Query: 371 ITPSLQH----YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +    +        L+D+ SR G +D +E +  +M    D  +W  +++ 
Sbjct: 427 VKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVR-DRVSWNTMITG 475



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 178/395 (45%), Gaps = 75/395 (18%)

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           P R   SW   L +  ++N  ++ IS +  M  +   +PD+F F +++KA   L   + G
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEM-TVSGARPDNFAFPAVLKAVSGLQDLKTG 111

Query: 125 KQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           +Q+HA  V   +    V V ++LV+MY KCG   +   VFD I  ++ VSW + ++A  R
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCR 171

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
             + + A+E F    + N+               E+ +F                  L S
Sbjct: 172 FEKWEQALEAFRAMQMENM---------------ELSSF-----------------TLVS 199

Query: 244 IVGACANFAV---LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           +  AC+N  V   L LGKQ+HG  + +G +   F +NA++ MYAK   +  +K +F    
Sbjct: 200 VALACSNLGVMHGLRLGKQLHGYSLRVGDQK-TFTNNALMAMYAKLGRVDDSKALFESFV 258

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            +D+VSW ++I   +Q  +  E LA +  MV  GV+ + VT   ++ ACSH+  +  G++
Sbjct: 259 DRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERLDVGKE 318

Query: 361 LF------KSMIEDYGITPSLQHYTC-------------------------LLDLLSRSG 389
           +         +IE+  +  +L    C                         ++   +R+G
Sbjct: 319 IHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNG 378

Query: 390 HLDEAE-----NLIKAMPFEPDEPTWAALLSACKH 419
            LDE        +IK     P+  T A+++ AC H
Sbjct: 379 -LDEKALILFIEMIKVAGLLPNTTTMASVMPACVH 412



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 82/367 (22%), Positives = 151/367 (41%), Gaps = 52/367 (14%)

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
           +P R+   W   +    +S +  +A  ++IEM   G    D     +++ A +    L+ 
Sbjct: 52  SPSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGAR-PDNFAFPAVLKAVSGLQDLKT 110

Query: 257 GKQIHGLVIALGY-ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
           G+QIH   +  GY  S + ++N +V+MY KC  I     +F R+  +D VSW S I    
Sbjct: 111 GEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALC 170

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL-----VGK----------GRK 360
           +  + E+ L  +  M    ++ +  T V +  ACS++G+     +GK           +K
Sbjct: 171 RFEKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVGDQK 230

Query: 361 LF------------------KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
            F                  K++ E + +   +  +  ++   S+S    EA    + M 
Sbjct: 231 TFTNNALMAMYAKLGRVDDSKALFESF-VDRDMVSWNTMISSFSQSDRFSEALAFFRLMV 289

Query: 403 FEP---DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
            E    D  T A++L AC H    ++G  +  H   L+  D     L+ N +  +A+   
Sbjct: 290 LEGVELDGVTIASVLPACSHLERLDVGKEI--HAYVLRNND-----LIENSFVGSALVDM 342

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
               R++ S   V        IE         +G   + L ++   L  E+   +K  G 
Sbjct: 343 YCNCRQVESGRRVFDHILGRRIELWNA---MISGYARNGLDEKALILFIEM---IKVAGL 396

Query: 520 VPDTSSV 526
           +P+T+++
Sbjct: 397 LPNTTTM 403


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 223/590 (37%), Positives = 336/590 (56%), Gaps = 36/590 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HA ++         + NTL++ Y KC  + YA  L +EM  RD V+W +++T Y+Q 
Sbjct: 35  KIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQH 94

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL--GKQVHACFVLSPFCDDD 140
           + PQ  + +   ML +  L+P+ F  ASL+KA   +G+T +  G+Q+H    L    D +
Sbjct: 95  DRPQDALLLLPEMLRIG-LKPNQFTLASLLKAASGVGSTDVLQGRQLHG-LCLRYGYDSN 152

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           V        Y  C                      A+L  YAR    ++A  IF+    +
Sbjct: 153 V--------YVSC----------------------AILDMYARCHHLEEAQLIFDVMVSK 182

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           N   W AL++G  +      AF  F  M RE V        SS++ ACA+   LE GK +
Sbjct: 183 NEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTH-FTYSSVLCACASMGSLEQGKWV 241

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H L+I  G +   F+ N ++DMYAK   I  AK +F R+ ++DVVSW S++ G +QHG  
Sbjct: 242 HALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLG 301

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           +  L  ++EM+   + PN++TF+ ++ ACSH GL+ +GR  F  M++ Y + P + HY  
Sbjct: 302 KVALQRFEEMLRTRIAPNDITFLCVLTACSHAGLLDEGRHYF-DMMKKYNVEPQISHYVT 360

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DLL R+GHLD A   I  MP +P    W ALL AC+ H+N E+G   A  +  L    
Sbjct: 361 MVDLLGRAGHLDRAIQFISEMPIKPTAAVWGALLGACRMHKNMELGGYAAECIFELDSHY 420

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
           P +++LL N+YA A  W   +KVRK+M    VKKEP  S++E     H+F A + +HP +
Sbjct: 421 PGTHVLLYNIYALAGRWNDAAKVRKMMKESGVKKEPACSWVEMENEVHVFVADDDAHPQR 480

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
            EI  +  ++  ++K  GYVPD+S VL  M+Q+E+E +L +HSE+LA+A+ LL + PG+ 
Sbjct: 481 REIHNMWEQISDKIKEIGYVPDSSHVLLCMDQQEREAKLQYHSEKLALAFALLNTPPGST 540

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +R+ KN+R+CGDCH   K +S++ +REI+VRD  R+HHF DG CSC D+W
Sbjct: 541 IRIKKNIRICGDCHSAFKFVSKLVEREIIVRDTNRFHHFCDGACSCEDYW 590



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 166/313 (53%), Gaps = 36/313 (11%)

Query: 110 SLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           +L+K C  L     GK +HA  + S F DD V++++L+++YAKCG    AR +FD +  +
Sbjct: 20  TLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSR 79

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
           + V+WTA+++ Y++  R +DA+ +                                 EM 
Sbjct: 80  DVVTWTALITGYSQHDRPQDALLLLP-------------------------------EML 108

Query: 230 REGVDIVDPLVLSSIVGACANFAVLEL--GKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           R G+   +   L+S++ A +     ++  G+Q+HGL +  GY+S +++S AI+DMYA+C 
Sbjct: 109 RIGLK-PNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDSNVYVSCAILDMYARCH 167

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            +  A+ IF  M  K+ VSW ++I G A+ GQ ++   L+  M+   VKP   T+  ++ 
Sbjct: 168 HLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLC 227

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           AC+ +G + +G+ +   MI+ +G          LLD+ ++SG +++A+ +   +  + D 
Sbjct: 228 ACASMGSLEQGKWVHALMIK-WGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLA-KRDV 285

Query: 408 PTWAALLSACKHH 420
            +W ++L+    H
Sbjct: 286 VSWNSMLTGYSQH 298



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/179 (32%), Positives = 102/179 (56%), Gaps = 4/179 (2%)

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
           +  +++  C +   L  GK IH L++   +   L + N ++++YAKC D++ A+ +F  M
Sbjct: 17  ICHTLLKRCTHLNKLNEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEM 76

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL--VGK 357
             +DVV+WT++I G +QH + ++ L L  EM+  G+KPN+ T   L+ A S VG   V +
Sbjct: 77  SSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQ 136

Query: 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           GR+L   +   YG   ++     +LD+ +R  HL+EA+ +   M    +E +W AL++ 
Sbjct: 137 GRQL-HGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQLIFDVM-VSKNEVSWNALIAG 193


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 233/609 (38%), Positives = 340/609 (55%), Gaps = 36/609 (5%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNT-LIDAYGKCDLVQYAHHLL 61
           +S+Y   L+ C   +     K LHA+I ++G+  + PL  T L++ Y  C+ +  AH L 
Sbjct: 1   MSYYASLLQSCVVRKAIEPGKQLHARICQVGI-SFNPLLATKLVNLYCICNSLTNAHLLF 59

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
           + + +R+   W  ++  Y      +  IS++  M     L PD F F  ++KAC +L A 
Sbjct: 60  DRISKRNLFLWNVMIRGYAWNGPYELAISLYYQMRDYG-LVPDKFTFPFVLKACSALSAM 118

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
             GK++H   + S    D  V ++L+DMYAKCG   +AR VFD I  ++ V W +ML+ Y
Sbjct: 119 EEGKKIHKDVIRSGLESDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATY 178

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
           +++G+  +++ +        L                            EG  ++     
Sbjct: 179 SQNGQPDESLALCRVMAFNGL-------------------------KPTEGTFVIS---- 209

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
              + A A+  +L  GK++HG     G+ES   +  A++DMYAK   +  A+ +F  +  
Sbjct: 210 ---IAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMYAKSGSVNVARSLFELLEE 266

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           K VVSW ++I G A HG A E L L+ EM    V P+ +TFVG++ ACSH GL+ +G+  
Sbjct: 267 KRVVSWNAMITGYAMHGHANEALDLFKEM-KGKVLPDHITFVGVLAACSHGGLLNEGKMH 325

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F+SMI D+ I P++QHYTC++DLL   G L+EA  LI  M  EPD   W ALL +CK H 
Sbjct: 326 FRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEPDAGVWGALLHSCKIHG 385

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           N EMG      L+ L+P+D  +Y++LSN+YA A  W  V+++R LM    +KK    S+I
Sbjct: 386 NVEMGELALEKLVELEPDDGGNYVILSNMYAQAGKWDGVARLRDLMMNKGLKKSIACSWI 445

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E G   H F + +TSHP  + I+  L      MK  GY P   SV HD+E  EK   +  
Sbjct: 446 EVGNKVHAFLSEDTSHPKSEAIYAELKRTGKLMKEAGYAPQVGSVFHDVEDDEKVDMVSC 505

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSERLA+A+GL+ +  GT L ++KNLR+C DCH+ +K IS+IT+REI +RD  RYHHFKD
Sbjct: 506 HSERLAIAFGLISTSAGTKLLIIKNLRICEDCHVAIKFISKITEREITIRDVNRYHHFKD 565

Query: 602 GKCSCNDFW 610
           G CSC DFW
Sbjct: 566 GVCSCGDFW 574


>gi|356569774|ref|XP_003553071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 775

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 224/572 (39%), Positives = 343/572 (59%), Gaps = 5/572 (0%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           N++I  +G+   V+ A  +   +   +RD VSW+++++ Y Q  + ++ + +F  M    
Sbjct: 206 NSMIALFGRKGCVEKARRIFNGVRGRERDMVSWSAMVSCYEQNEMGEEALVLFVEMKGSG 265

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
               +  V ++L  AC  +    +G+ VH   V     D   +K++L+ +Y+ CG   +A
Sbjct: 266 VAVDEVVVVSAL-SACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDA 324

Query: 160 RAVFD-SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           R +FD   +L + +SW +M+S Y R G  +DA  +F   P +++  W+A++SG  Q    
Sbjct: 325 RRIFDDGGELLDLISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECF 384

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            +A   F EM+  GV   D   L S + AC + A L+LGK IH  +     +  + +S  
Sbjct: 385 SEALALFQEMQLHGVR-PDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTT 443

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++DMY KC  +  A ++F  M  K V +W ++I+G A +G  E++L ++ +M   G  PN
Sbjct: 444 LIDMYMKCGCVENALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFADMKKTGTVPN 503

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           E+TF+G++ AC H+GLV  GR  F SMI ++ I  +++HY C++DLL R+G L EAE LI
Sbjct: 504 EITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHYGCMVDLLGRAGLLKEAEELI 563

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
            +MP  PD  TW ALL AC+ HR+ EMG R+   L+ L+P+    ++LLSN+YAS   W 
Sbjct: 564 DSMPMAPDVATWGALLGACRKHRDNEMGERLGRKLIQLQPDHDGFHVLLSNIYASKGNWG 623

Query: 459 HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
           +V ++R +M+   V K PG S IE     H F AG+ +HP  ++I  +L  + A++K  G
Sbjct: 624 NVLEIRGIMAQHGVVKTPGCSMIEANGTVHEFLAGDKTHPQINDIEHMLDVVAAKLKIEG 683

Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
           YVP TS V  D++++EKE  LF HSE+LAVA+GL+   P T +RV KNLR+C DCH V+K
Sbjct: 684 YVPTTSEVSLDIDEEEKETALFRHSEKLAVAFGLITISPPTPIRVTKNLRICNDCHTVVK 743

Query: 579 MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +IS+   R+IVVRD  R+HHFK G CSC DFW
Sbjct: 744 LISKAFDRDIVVRDRHRFHHFKHGACSCMDFW 775



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 126/480 (26%), Positives = 218/480 (45%), Gaps = 96/480 (20%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHH------------L 60
           C RH      K L +Q I  GL         + D Y    L+ ++ H            +
Sbjct: 15  CPRH-----FKQLLSQTILTGL---------ITDPYAASRLINFSSHSTTLVPFHYSLRI 60

Query: 61  LEEMPQRDHVSWASILTAY-NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
              +   +  +W +I+ A+    N P + +  +   LA    +PD + +  L++ C +  
Sbjct: 61  FNHLRNPNTFTWNTIMRAHLYLQNSPHQALLHYKLFLA-SHAKPDSYTYPILLQCCAARV 119

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
           +   G+Q+HA  V S F  D  V+++L+++YA CG   +AR VF+   + + VSW  +L+
Sbjct: 120 SEFEGRQLHAHAVSSGFDGDVYVRNTLMNLYAVCGSVGSARRVFEESPVLDLVSWNTLLA 179

Query: 180 AYARSGRKKDAMEIFEQAPVRN---------------------------------LFLWT 206
            Y ++G  ++A  +FE  P RN                                 +  W+
Sbjct: 180 GYVQAGEVEEAERVFEGMPERNTIASNSMIALFGRKGCVEKARRIFNGVRGRERDMVSWS 239

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
           A+VS   Q+    +A   F+EM+  GV + + +V+S++  AC+    +E+G+ +HGL + 
Sbjct: 240 AMVSCYEQNEMGEEALVLFVEMKGSGVAVDEVVVVSAL-SACSRVLNVEMGRWVHGLAVK 298

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIF-----------------GRMR--------- 300
           +G E  + + NA++ +Y+ C +I+ A+ IF                 G +R         
Sbjct: 299 VGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLDLISWNSMISGYLRCGSIQDAEM 358

Query: 301 ------RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL 354
                  KDVVSW+++I G AQH    E LAL+ EM   GV+P+E   V  I AC+H+  
Sbjct: 359 LFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEMQLHGVRPDETALVSAISACTHLAT 418

Query: 355 VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           +  G K   + I    +  ++   T L+D+  + G ++ A  +  AM  E    TW A++
Sbjct: 419 LDLG-KWIHAYISRNKLQVNVILSTTLIDMYMKCGCVENALEVFYAME-EKGVSTWNAVI 476



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/346 (21%), Positives = 142/346 (41%), Gaps = 67/346 (19%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-----------------D 52
           L  C+R       + +H   +K+G+  Y  L N LI  Y  C                 D
Sbjct: 277 LSACSRVLNVEMGRWVHGLAVKVGVEDYVSLKNALIHLYSSCGEIVDARRIFDDGGELLD 336

Query: 53  L---------------VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLA 97
           L               +Q A  L   MP++D VSW+++++ Y Q     + +++F  M  
Sbjct: 337 LISWNSMISGYLRCGSIQDAEMLFYSMPEKDVVSWSAMISGYAQHECFSEALALFQEM-Q 395

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
           L  ++PD     S + AC  L    LGK +HA    +    + ++ ++L+DMY KCG   
Sbjct: 396 LHGVRPDETALVSAISACTHLATLDLGKWIHAYISRNKLQVNVILSTTLIDMYMKCGCVE 455

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
           NA  VF +++ K   +W A++   A +G  + ++ +F                       
Sbjct: 456 NALEVFYAMEEKGVSTWNAVILGLAMNGSVEQSLNMFA---------------------- 493

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ-IHGLVIALGYESCLFIS 276
                    +M++ G  + + +    ++GAC +  ++  G+   + ++     E+ +   
Sbjct: 494 ---------DMKKTGT-VPNEITFMGVLGACRHMGLVNDGRHYFNSMIHEHKIEANIKHY 543

Query: 277 NAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAE 321
             +VD+  +   +  A+++   M    DV +W +++    +H   E
Sbjct: 544 GCMVDLLGRAGLLKEAEELIDSMPMAPDVATWGALLGACRKHRDNE 589


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  435 bits (1119), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 240/654 (36%), Positives = 376/654 (57%), Gaps = 69/654 (10%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  ++K GL +  P+ N+LI+ Y KC  V+ A  L ++   +  V+W S+++ Y    L
Sbjct: 216 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGL 275

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
             + + +F +M  L+ ++     FAS++K C +L   R  +Q+H   V   F  D  +++
Sbjct: 276 DLEALGMFYSM-RLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRT 334

Query: 145 SLVDMYAKCGLPNNARAVFDSIK-LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR--- 200
           +L+  Y+KC    +A  +F  I  + N VSWTAM+S + ++  K++A+++F +   +   
Sbjct: 335 ALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVR 394

Query: 201 -NLFLWTALVSGL------------VQSRNE---------IDAFYSFIEMRR-----EGV 233
            N F ++ +++ L            V++  E         +DA+    ++        G+
Sbjct: 395 PNEFTYSVILTALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGI 454

Query: 234 DIVDPLVLSSIVGACAN----------FAVLELG-------------------------- 257
           D  D +  S+++   A           F  L  G                          
Sbjct: 455 DDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQG 514

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           KQ HG  I    +S L +S+A++ MYAK  +I +A+++F R R KD+VSW S+I G AQH
Sbjct: 515 KQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQH 574

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           GQA + L ++ EM    VK + VTF+G+  AC+H GLV +G K F  M+ D  I P+ +H
Sbjct: 575 GQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEH 634

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
            +C++DL SR+G L++A  +I+ MP       W  +L+AC+ H+ TE+G   A  ++++K
Sbjct: 635 NSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMK 694

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
           PED ++Y+LLSN+YA +  WQ  +KVRKLM+   VKKEPGYS+IE    ++ F AG+ SH
Sbjct: 695 PEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFLAGDRSH 754

Query: 498 PLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVP 557
           PLKD+I+  L +L   +K  GY PDTS VL D++ + KE  L  HSERLA+A+GL+ +  
Sbjct: 755 PLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSERLAIAFGLIATPK 814

Query: 558 GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF-KDGKCSCNDFW 610
           G+ L ++KNLRVCGDCH+V+K+I++I +REIVVRD+ R+HHF  DG CSC DFW
Sbjct: 815 GSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGVCSCGDFW 868



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/462 (26%), Positives = 211/462 (45%), Gaps = 43/462 (9%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           M  S +   L+V A     L  + LH Q IK G      +  +L+D Y K    +    +
Sbjct: 91  MDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKV 150

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
            +EM +R+ V+W ++++ Y + ++  + +++F  M   +  QP+ F FA+ +      G 
Sbjct: 151 FDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQN-EGTQPNSFTFAAALGVLAEEGV 209

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
              G QVH   V +       V +SL+++Y KCG    AR +FD  ++K+ V+W +M+S 
Sbjct: 210 GGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISG 269

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           YA +G   +A+ +                            FYS   MR   V + +   
Sbjct: 270 YAANGLDLEALGM----------------------------FYS---MRLNYVRLSES-S 297

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
            +S++  CAN   L   +Q+H  V+  G+     I  A++  Y+KC+ ++ A  +F  + 
Sbjct: 298 FASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIG 357

Query: 301 -RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
              +VVSWT++I G  Q+   EE + L+ EM   GV+PNE T+  ++ A   +       
Sbjct: 358 CVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHA 417

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           ++ K+  E           T LLD   + G ++EA  +   +  + D   W+A+L+    
Sbjct: 418 QVVKTNYERSSTVG-----TALLDAYVKLGKVEEAAKVFSGID-DKDIVAWSAMLAGYAQ 471

Query: 420 HRNTEMGTRVANHLL--SLKPEDPS-SYILLSNVYASAAMWQ 458
              TE   ++   L    +KP + + S IL      +A+M Q
Sbjct: 472 TGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQ 513



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 168/360 (46%), Gaps = 34/360 (9%)

Query: 57  AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116
           AH+L ++ P RD  S+ S+L  +++    Q+   +F  +  L  ++ D  +F+S++K   
Sbjct: 46  AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLG-MEMDCSIFSSVLKVSA 104

Query: 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTA 176
           +L     G+Q+H   +   F DD  V +SLVD Y K                        
Sbjct: 105 TLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMK------------------------ 140

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
                      KD  ++F++   RN+  WT L+SG  ++    +    F+ M+ EG    
Sbjct: 141 -------GSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQ-P 192

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           +    ++ +G  A   V   G Q+H +V+  G +  + +SN+++++Y KC ++  A+ +F
Sbjct: 193 NSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILF 252

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
            +   K VV+W S+I G A +G   E L ++  M    V+ +E +F  +I  C+++  + 
Sbjct: 253 DKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELR 312

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
              +L  S+++ YG        T L+   S+   + +A  L K +    +  +W A++S 
Sbjct: 313 FTEQLHCSVVK-YGFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISG 371



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/233 (24%), Positives = 120/233 (51%), Gaps = 3/233 (1%)

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           S R  +A  +F+++P R+   + +L+ G  +     +A   F+ + R G+++ D  + SS
Sbjct: 40  SSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEM-DCSIFSS 98

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++   A       G+Q+H   I  G+   + +  ++VD Y K S+    + +F  M+ ++
Sbjct: 99  VLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERN 158

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           VV+WT++I G A++   +E L L+  M + G +PN  TF   +   +  G+ G+G ++  
Sbjct: 159 VVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHT 218

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            ++++ G+  ++     L++L  + G++ +A  L      +    TW +++S 
Sbjct: 219 VVVKN-GLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKS-VVTWNSMISG 269



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 10/177 (5%)

Query: 10  LRVCARHQIALTV-KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L VCA    ++   K  H   IK  L     + + L+  Y K   ++ A  + +   ++D
Sbjct: 501 LNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKD 560

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW S+++ Y Q     K + +F  M    K++ D   F  +  AC   G    G++  
Sbjct: 561 LVSWNSMISGYAQHGQAMKALDVFKEM-KKRKVKMDGVTFIGVFAACTHAGLVEEGEKYF 619

Query: 129 ACFV----LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI-KLKNSVSWTAMLSA 180
              V    ++P  + +   S +VD+Y++ G    A  V +++     S  W  +L+A
Sbjct: 620 DIMVRDCKIAPTKEHN---SCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAA 673


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 227/639 (35%), Positives = 362/639 (56%), Gaps = 35/639 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-------------- 51
           + + L  CA  Q     K +H+ ++KLG     P+ N+L++ Y KC              
Sbjct: 148 FTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMR 207

Query: 52  ---------------DLVQY--AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFST 94
                             Q+  A  L ++M   D VSW SI+T Y       + +  FS 
Sbjct: 208 LKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSF 267

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
           ML    L+PD F   S++ AC +  + +LGKQ+HA  V +       V ++L+ MYAK G
Sbjct: 268 MLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALISMYAKSG 327

Query: 155 LPNNARAVFDSIKLK--NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGL 212
               A  + +       N +++T++L  Y + G    A  IF+    R++  WTA++ G 
Sbjct: 328 AVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGY 387

Query: 213 VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC 272
            Q+    DA   F  M REG    +   L++++   ++ A L+ GKQ+H + I L   S 
Sbjct: 388 AQNGLISDALVLFRLMIREGPK-PNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSS 446

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
           + + NA++ MY++   I  A+ IF  +   +D ++WTS+I+  AQHG   E + L+++M+
Sbjct: 447 VSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKML 506

Query: 332 SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
              +KP+ +T+VG++ AC+HVGLV +G+  F  M   + I P+  HY C++DLL R+G L
Sbjct: 507 RINLKPDHITYVGVLSACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLL 566

Query: 392 DEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451
           +EA N I+ MP EPD   W +LLS+C+ H+  ++    A  LL + P +  +Y+ L+N  
Sbjct: 567 EEAYNFIRNMPIEPDVVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNNSGAYLALANTL 626

Query: 452 ASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELD 511
           ++   W+  +KVRK M    VKKE G+S+++     HIF   +  HP +D I+ +++++ 
Sbjct: 627 SACGKWEDAAKVRKSMKDKAVKKEQGFSWVQIKNKVHIFGVEDALHPQRDAIYCMISKIW 686

Query: 512 AEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCG 571
            E+K+ G++PDT+SVLHD+EQ+ KE+ L  HSE+LA+A+ L+ +   T +R++KNLRVC 
Sbjct: 687 KEIKKMGFIPDTNSVLHDLEQEVKEQILRHHSEKLAIAFALINTPKHTTVRIMKNLRVCN 746

Query: 572 DCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           DCH  ++ IS + +REI+VRDATR+HHFKDG CSC D+W
Sbjct: 747 DCHSAIRYISLLVEREIIVRDATRFHHFKDGSCSCQDYW 785



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 200/412 (48%), Gaps = 35/412 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT++ A+ K   +  A  + +E+PQ D VSW +++  YN   L +  +  F  M++   +
Sbjct: 83  NTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVS-SGI 141

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P  F F +++ +C +  A  +GK+VH+  V         V +SL++MYAKCG    A+ 
Sbjct: 142 SPTQFTFTNVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKV 201

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VFD ++LK++ +W  M+S + +  +   A+ +F+Q    ++  W ++++G      +I A
Sbjct: 202 VFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRA 261

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
             +F  M +      D   L S++ ACAN   L+LGKQIH  ++    +    + NA++ 
Sbjct: 262 LETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAGAVGNALIS 321

Query: 282 MYAKC---------------------------------SDIIAAKDIFGRMRRKDVVSWT 308
           MYAK                                   DI  A+ IF  ++ +DVV+WT
Sbjct: 322 MYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWT 381

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++IVG AQ+G   + L L+  M+  G KPN  T   ++   S +  +  G++L    I  
Sbjct: 382 AMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRL 441

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
             ++ S+     L+ + SRSG + +A  +   +    D  TW +++ +   H
Sbjct: 442 EEVS-SVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMILSLAQH 492



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 146/293 (49%), Gaps = 37/293 (12%)

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           + ++L+++Y K G  ++A  +FD + LK + SW  +LSA+A++G    A  +F++ P  +
Sbjct: 50  LTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAHAKAGNLDSARRVFDEIPQPD 109

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
              WT ++ G         A ++F+ M   G+        ++++ +CA    L++GK++H
Sbjct: 110 SVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQ-FTFTNVLASCAAAQALDVGKKVH 168

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             V+ LG    + ++N++++MYAKC D + AK +F RMR KD  +W ++I    Q  Q +
Sbjct: 169 SFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFD 228

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
             LAL+D+M      P+ V++  +I    H G   +  + F  M                
Sbjct: 229 LALALFDQMTD----PDIVSWNSIITGYCHQGYDIRALETFSFM---------------- 268

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
                           +K+   +PD+ T  ++LSAC +  + ++G ++  H++
Sbjct: 269 ----------------LKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIV 305



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 86/194 (44%), Gaps = 38/194 (19%)

Query: 256 LGKQIHGLVIALGYESC-LFISNAIVDMY------------------------------- 283
           +G+ IH  +I  G     +F++N ++++Y                               
Sbjct: 30  IGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKTTFSWNTILSAH 89

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           AK  ++ +A+ +F  + + D VSWT++IVG    G  +  +  +  MVS+G+ P + TF 
Sbjct: 90  AKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVSSGISPTQFTFT 149

Query: 344 GLIYACSHVGLVGKGRKL--FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
            ++ +C+    +  G+K+  F   +   G+ P       LL++ ++ G    A+ +   M
Sbjct: 150 NVLASCAAAQALDVGKKVHSFVVKLGQSGVVPVAN---SLLNMYAKCGDSVMAKVVFDRM 206

Query: 402 PFEPDEPTWAALLS 415
             + D  TW  ++S
Sbjct: 207 RLK-DTSTWNTMIS 219


>gi|225450565|ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
           isoform 1 [Vitis vinifera]
          Length = 672

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 230/628 (36%), Positives = 355/628 (56%), Gaps = 44/628 (7%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQY-----AHHLLEEMPQRDHVSWASIL 76
           +K  HA I++ G  Q   +  +L+ +Y      +Y     +  + + + + +   W  ++
Sbjct: 50  LKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMI 109

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
               + N P K I ++  M+ +   +P+ + + +++KAC   G    G QVHA  V    
Sbjct: 110 KVCIENNEPFKAILLYYEMM-VAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGL 168

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKKDAMEIFE 195
             D  + SS + MYA  G    AR + D    + ++V W AM+  Y R G  + A E+FE
Sbjct: 169 GGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFE 228

Query: 196 QAPVRNLF-LWTALVSGL---------------VQSRNEI----------------DAFY 223
             P R++   W A++SG                ++ R+EI                +A  
Sbjct: 229 GMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALE 288

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            F +M++E +      VL S++ ACAN   L+ G+ IH        +    +  ++VDMY
Sbjct: 289 IFHQMQKEKIR-PRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMY 347

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           AKC  I  A ++F +M  K+V SW ++I G A HG+AE+ + L+ +M    + PNE+TFV
Sbjct: 348 AKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DINPNEITFV 404

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
           G++ AC+H GLV KG  +F SM ++YG+ P ++HY C++DLL R+G L EAE ++ ++P 
Sbjct: 405 GVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPT 464

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
           EP    W ALL AC+ H N E+G RV   LL L+P++   Y LLSN+YA A  W+ V +V
Sbjct: 465 EPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEV 524

Query: 464 RKLMSVMEVKKEPGYSYIEFGKGS-HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPD 522
           RKLM    +K  PG S I+ G+G  H F  G+ SHP   +I+++L ++   ++  GY PD
Sbjct: 525 RKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPD 584

Query: 523 TSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISR 582
            S VL D++++EKE  ++ HSE+LA+ +GL+ + PGT +R+VKNLRVC DCH   K+IS+
Sbjct: 585 PSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQ 644

Query: 583 ITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +  REI+VRD  RYHHF++G CSC DFW
Sbjct: 645 VYNREIIVRDRIRYHHFRNGACSCKDFW 672


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  435 bits (1118), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/588 (38%), Positives = 337/588 (57%), Gaps = 33/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +++H  I K G      + N LI  Y K   V+  + + E M   D VSW ++L+ +  +
Sbjct: 172 QSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDS 231

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               +   IF  ML L+  +P+ F F S++++C SL     GKQVHA  + +   DDD V
Sbjct: 232 QTCGRGPRIFYQML-LEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFV 290

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LVDMYAK      AR +                         +DA   F++   R++
Sbjct: 291 GTALVDMYAK------ARCL-------------------------EDAGVAFDRLVNRDI 319

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
           F WT ++SG  Q+     A   F +M+REG+   +   L+S +  C++ A LE G+Q+H 
Sbjct: 320 FSWTVIISGYAQTDQAEKAVKYFRQMQREGIK-PNEYTLASCLSGCSHMATLENGRQLHA 378

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           + +  G+   +F+ +A+VD+Y KC  +  A+ IF  +  +D+VSW +II G +QHGQ E+
Sbjct: 379 VAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEK 438

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L  +  M+S G+ P+E TF+G++ ACS +GLV +G+K F SM + YGI PS++HY C++
Sbjct: 439 ALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMV 498

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+L R+G  +E +  I+ M   P    W  +L ACK H N + G + A  L  ++P   S
Sbjct: 499 DILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPMMDS 558

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           SYILLSN++AS   W  V  +R LM+   +KKEPG S++E     H+F + + SHP   E
Sbjct: 559 SYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEVDGQVHVFLSQDGSHPKIRE 618

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L +L   +   GYVP T  VLH++  KEK   L++HSERLA+++ LL +     +R
Sbjct: 619 IYAKLDKLGQSLMSIGYVPKTEVVLHNVSNKEKMEHLYYHSERLALSFALLSTNAVKPIR 678

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + KNLR+C DCH  MK+IS IT +EIVVRD  R+HHFK G CSC D W
Sbjct: 679 IFKNLRICEDCHDFMKLISDITNQEIVVRDIRRFHHFKRGTCSCQDRW 726



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 194/448 (43%), Gaps = 71/448 (15%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           ++ A  L   MP+++ VSW ++L  Y Q    +K + +F  M   +  +   F  ++++K
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECET-KFSKFTLSTVLK 59

Query: 114 ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS 173
            C + G+ R GK +HA  + S    D+ +  SLVDMY+KCG   +A  VF  I+  + V+
Sbjct: 60  GCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVA 119

Query: 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233
           W+AM++   + G  ++A E+F                                 MRR+G 
Sbjct: 120 WSAMITGLDQQGHGQEAAELFHL-------------------------------MRRKGA 148

Query: 234 DIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
              +   LSS+V    N   L  G+ IHG +   G+ES   +SN ++ MY K   +    
Sbjct: 149 R-PNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGN 207

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
            +F  M   D+VSW +++ G            ++ +M+  G KPN  TF+ ++ +CS + 
Sbjct: 208 KVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLL 267

Query: 354 LVGKGRKLFKSMI------EDYGITPSLQHYT---CLLD------------------LLS 386
               G+++   +I      +D+  T  +  Y    CL D                  ++S
Sbjct: 268 DPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIIS 327

Query: 387 RSGHLDEAENLIKAM------PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
                D+AE  +K          +P+E T A+ LS C H    E G ++  H +++K   
Sbjct: 328 GYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQL--HAVAVKAGH 385

Query: 441 PSSYIL---LSNVYASAAMWQHVSKVRK 465
                +   L ++Y      +H   + K
Sbjct: 386 FGDIFVGSALVDLYGKCGCMEHAEAIFK 413


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 215/571 (37%), Positives = 339/571 (59%), Gaps = 38/571 (6%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L N LI+ Y K +L+  AH L ++MPQR+ +SW ++++AY++  + QK + +   ML  D
Sbjct: 98  LVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR-D 156

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            ++P+ + ++S++++C  +   R+   +H   +      D  V+S+L+D++AK G P   
Sbjct: 157 NVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEP--- 210

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
                                       +DA+ +F++    +  +W +++ G  Q+    
Sbjct: 211 ----------------------------EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSD 242

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
            A   F  M+R G  I +   L+S++ AC   A+LELG Q H  V  + Y+  L ++NA+
Sbjct: 243 VALELFKRMKRAGF-IAEQATLTSVLRACTGLALLELGMQAH--VHIVKYDQDLILNNAL 299

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           VDMY KC  +  A  +F +M+ +DV++W+++I G AQ+G ++E L L++ M S+G KPN 
Sbjct: 300 VDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNY 359

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           +T VG+++ACSH GL+  G   F+SM + YGI P  +HY C++DLL ++G LD+A  L+ 
Sbjct: 360 ITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLN 419

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
            M  EPD  TW  LL AC+  RN  +    A  +++L PED  +Y LLSN+YA++  W  
Sbjct: 420 EMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDS 479

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
           V ++R  M    +KKEPG S+IE  K  H F  G+ SHP   E+ + L +L   +   GY
Sbjct: 480 VEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGY 539

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
           VP+T+ VL D+E ++ E  L  HSE+LA+A+GL+      V+R+ KNLR+CGDCH+  K+
Sbjct: 540 VPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKL 599

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            S++  R IV+RD  RYHHF+DGKCSC D+W
Sbjct: 600 ASKLEIRSIVIRDPIRYHHFQDGKCSCGDYW 630



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 3/175 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           V+ LH  IIK GL     + + LID + K    + A  + +EM   D + W SI+  + Q
Sbjct: 178 VRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQ 237

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
            +     + +F  M     +  +     S+++AC  L    LG Q H   V   +  D +
Sbjct: 238 NSRSDVALELFKRMKRAGFI-AEQATLTSVLRACTGLALLELGMQAHVHIV--KYDQDLI 294

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           + ++LVDMY KCG   +A  VF+ +K ++ ++W+ M+S  A++G  ++A+++FE+
Sbjct: 295 LNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFER 349



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 93/190 (48%), Gaps = 5/190 (2%)

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           D    S ++  C +   +  G  I   +   G+   +F+ N +++MY K + +  A  +F
Sbjct: 60  DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLF 119

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
            +M +++V+SWT++I   ++    ++ L L   M+   V+PN  T+  ++ +C+ +  V 
Sbjct: 120 DQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV- 178

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             R L   +I++ G+   +   + L+D+ ++ G  ++A ++   M    D   W +++  
Sbjct: 179 --RMLHCGIIKE-GLESDVFVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGG 234

Query: 417 CKHHRNTEMG 426
              +  +++ 
Sbjct: 235 FAQNSRSDVA 244



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C    +AL    + A +  +   Q   L N L+D Y KC  ++ A  +  +M +RD 
Sbjct: 267 LRACT--GLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDV 324

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
           ++W+++++   Q    Q+ + +F  M +    +P++     ++ AC   G    G    +
Sbjct: 325 ITWSTMISGLAQNGYSQEALKLFERMKS-SGTKPNYITIVGVLFACSHAGLLEDGWYYFR 383

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
            +   + + P  +       ++D+  K G  ++A  + + ++ + ++V+W  +L A
Sbjct: 384 SMKKLYGIDPVREH---YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 436


>gi|15240085|ref|NP_196272.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170345|sp|Q9FG16.1|PP367_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g06540
 gi|10178110|dbj|BAB11403.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332003649|gb|AED91032.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 622

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 211/560 (37%), Positives = 336/560 (60%), Gaps = 3/560 (0%)

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
           +L+ YA+ +  ++   +   +  ++  ++    P K    ++ ML   ++ PD+  F  L
Sbjct: 65  NLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFYTQMLK-SRIWPDNITFPFL 123

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           +KA   +    +G+Q H+  V   F +D  V++SLV MYA CG    A  +F  +  ++ 
Sbjct: 124 IKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDV 183

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           VSWT+M++ Y + G  ++A E+F++ P RNLF W+ +++G  ++     A   F  M+RE
Sbjct: 184 VSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKRE 243

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
           GV + +  V+ S++ +CA+   LE G++ +  V+       L +  A+VDM+ +C DI  
Sbjct: 244 GV-VANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEK 302

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           A  +F  +   D +SW+SII G A HG A + +  + +M+S G  P +VTF  ++ ACSH
Sbjct: 303 AIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSH 362

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
            GLV KG +++++M +D+GI P L+HY C++D+L R+G L EAEN I  M  +P+ P   
Sbjct: 363 GGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILG 422

Query: 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
           ALL ACK ++NTE+  RV N L+ +KPE    Y+LLSN+YA A  W  +  +R +M    
Sbjct: 423 ALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKL 482

Query: 472 VKKEPGYSYIEF-GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDM 530
           VKK PG+S IE  GK +      +  HP   +I     E+  +++  GY  +T     D+
Sbjct: 483 VKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDV 542

Query: 531 EQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVV 590
           +++EKE  +  HSE+LA+AYG++K+ PGT +R+VKNLRVC DCH V K+IS +  RE++V
Sbjct: 543 DEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIV 602

Query: 591 RDATRYHHFKDGKCSCNDFW 610
           RD  R+HHF++G CSC D+W
Sbjct: 603 RDRNRFHHFRNGVCSCRDYW 622



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 138/318 (43%), Gaps = 50/318 (15%)

Query: 43  TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQ 102
           +++  Y KC +V+ A  + +EMP R+  +W+ ++  Y + N  +K I +F  M   + + 
Sbjct: 188 SMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFM-KREGVV 246

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162
            +  V  S++ +C  LGA   G++ +   V S    + ++ ++LVDM+ +CG    A  V
Sbjct: 247 ANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHV 306

Query: 163 FDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
           F+ +   +S+SW++++   A  G    AM  F Q           ++S     R+     
Sbjct: 307 FEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQ-----------MISLGFIPRD----- 350

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI-------HGLVIALGYESCLFI 275
                           +  ++++ AC++  ++E G +I       HG+   L +  C   
Sbjct: 351 ----------------VTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGC--- 391

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
              IVDM  +   +  A++   +M  K        ++G  +  +  E       M+   V
Sbjct: 392 ---IVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNML-IKV 447

Query: 336 KPNEVTFVGL---IYACS 350
           KP    +  L   IYAC+
Sbjct: 448 KPEHSGYYVLLSNIYACA 465



 Score = 48.9 bits (115), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   L+D + +C  ++ A H+ E +P+ D +SW+SI+          K +  FS M++L 
Sbjct: 286 LGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLG 345

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVH 128
            + P    F +++ AC   G    G +++
Sbjct: 346 FI-PRDVTFTAVLSACSHGGLVEKGLEIY 373


>gi|255543413|ref|XP_002512769.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547780|gb|EEF49272.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 684

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 226/605 (37%), Positives = 362/605 (59%), Gaps = 10/605 (1%)

Query: 11  RVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHV 70
           + CA     +  K +H   I+ G ++   L N LID +GKC  V  A  + ++M  +D V
Sbjct: 85  KACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVV 144

Query: 71  SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC 130
           SW S+   Y    + ++ I +F  M  L+ ++ +    +S++ AC      +LG++VH  
Sbjct: 145 SWTSMTYCYVNCGMCRQGILLFREM-GLNGIRANSLTVSSILPACADY--IKLGREVHG- 200

Query: 131 FVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
           F+L    + +V V S+LV+MYA       AR VFDS+  ++ VSW  ML+AY  +   + 
Sbjct: 201 FILRNEMEGNVYVSSALVNMYASSLGLKQARLVFDSMYHRDIVSWNVMLTAYFLNKEYER 260

Query: 190 AMEIFEQAPVRNLFL----WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
            + +F Q     + L    W A +SG +Q+     A     +M+  G+      ++S++ 
Sbjct: 261 GLGLFHQMRKEGIKLNQASWNAAISGCMQNGQHELALGILCKMQDSGIKPNRITIVSALP 320

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
           G C N   L  GK+IHG V    +   + I+ A+V +YAKC D+  ++ +F  M RKDVV
Sbjct: 321 G-CTNLESLRGGKEIHGYVFRHWFIEDVTITTALVLLYAKCGDLELSRHVFNTMPRKDVV 379

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +W ++I+  + HG+  E+L L+++M+ +GV+PN VTF+G++  CSH  L  +G  +F SM
Sbjct: 380 AWNTMIMANSMHGKGGESLILFNKMLDSGVEPNSVTFIGVLSGCSHSQLADEGLLVFNSM 439

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
             ++ ITP   HY+C++D+LSR+G L+EA + I+ MP EP    W ALL AC+ ++N E+
Sbjct: 440 SSEHSITPDADHYSCMVDVLSRAGRLEEAYDFIRKMPIEPTAAAWGALLGACRVYKNVEL 499

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           GT  A+ L  ++P++  +Y+LLSN+  +A  W   S++RK+M    + K PG S+++   
Sbjct: 500 GTLAASQLFEIEPDNAGNYVLLSNILVTAKKWVEASEIRKMMRDKGLAKTPGRSWVQVKN 559

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             + F  G+ S+  KD I+  L E+D +M+  GY P+T  VL +++Q+++E  L  HSER
Sbjct: 560 KVYSFVTGDKSNEQKDMIYRFLDEIDEKMRLDGYQPNTDFVLQNVDQEQREETLCSHSER 619

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LAVA+G+L S   T +RV KNLR+CGDCH  +K+I++I   +I+VRD+ R+HHF+DG C+
Sbjct: 620 LAVAFGILNSSGKTTVRVFKNLRICGDCHNAIKLIAKIVGMQIIVRDSLRFHHFRDGYCT 679

Query: 606 CNDFW 610
           CNDFW
Sbjct: 680 CNDFW 684



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 108/407 (26%), Positives = 194/407 (47%), Gaps = 82/407 (20%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           ++ A +L +++P+ D  +W  +++ + Q   P+K I I+ST+L+ + ++PD FV  S+ K
Sbjct: 27  LKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRN-VRPDKFVLLSVAK 85

Query: 114 ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS 173
           AC + G   + K++H   +   F  D V+ ++L+DM+ KC   N AR VFD + +K+ VS
Sbjct: 86  ACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMVVKDVVS 145

Query: 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233
           WT+M   Y   G  +  + +F                                EM   G+
Sbjct: 146 WTSMTYCYVNCGMCRQGILLFR-------------------------------EMGLNGI 174

Query: 234 DIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
              + L +SSI+ ACA++  ++LG+++HG ++    E  +++S+A+V+MYA    +  A+
Sbjct: 175 R-ANSLTVSSILPACADY--IKLGREVHGFILRNEMEGNVYVSSALVNMYASSLGLKQAR 231

Query: 294 DIFGRMRRKDVV-----------------------------------SWTSIIVGTAQHG 318
            +F  M  +D+V                                   SW + I G  Q+G
Sbjct: 232 LVFDSMYHRDIVSWNVMLTAYFLNKEYERGLGLFHQMRKEGIKLNQASWNAAISGCMQNG 291

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL----FKS-MIEDYGITP 373
           Q E  L +  +M  +G+KPN +T V  +  C+++  +  G+++    F+   IED  IT 
Sbjct: 292 QHELALGILCKMQDSGIKPNRITIVSALPGCTNLESLRGGKEIHGYVFRHWFIEDVTIT- 350

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
                T L+ L ++ G L+ + ++   MP   D   W  ++ A   H
Sbjct: 351 -----TALVLLYAKCGDLELSRHVFNTMP-RKDVVAWNTMIMANSMH 391



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 122/246 (49%), Gaps = 11/246 (4%)

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ---SRNEIDAFYSFIEMRREGVDIVDPLV 240
           SG  K A+ +F++ P  +L  WT L+SG  Q    +  ID + + +          D  V
Sbjct: 24  SGDLKRALYLFDKIPEPDLRTWTILISGHTQHGFPKKAIDIYSTLLSRNVRP----DKFV 79

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           L S+  ACA    L + K+IH   I  G+   L + NA++DM+ KC  +  A+ +F  M 
Sbjct: 80  LLSVAKACAASGDLVVAKKIHDDAIQFGFNKDLVLGNALIDMFGKCKFVNGARCVFDDMV 139

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            KDVVSWTS+       G   + + L+ EM   G++ N +T   ++ AC+    +  GR+
Sbjct: 140 VKDVVSWTSMTYCYVNCGMCRQGILLFREMGLNGIRANSLTVSSILPACAD--YIKLGRE 197

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           +   ++ +  +  ++   + L+++ + S  L +A  +  +M +  D  +W  +L+A   +
Sbjct: 198 VHGFILRNE-MEGNVYVSSALVNMYASSLGLKQARLVFDSM-YHRDIVSWNVMLTAYFLN 255

Query: 421 RNTEMG 426
           +  E G
Sbjct: 256 KEYERG 261


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 235/602 (39%), Positives = 345/602 (57%), Gaps = 34/602 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VC +     T   +H  +IK GL     + N LI+ Y K   ++ A    ++M   D 
Sbjct: 323 LPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDV 382

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW SI+ AY Q + P      F  M  L+  QPD     SL          +  + VH 
Sbjct: 383 VSWNSIIAAYEQNDDPVTAHGFFVKM-QLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHG 441

Query: 130 CFVLSPFCDDDVV-KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
             +   +  +DVV  +++VDMYAK GL ++A  VF+ I +K+ +SW  +++ YA++G   
Sbjct: 442 FIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLAS 501

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A+E+++                +++   EI               I +     SI+ A 
Sbjct: 502 EAIEVYK----------------MMEECKEI---------------IPNQGTWVSILPAY 530

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A+   L+ G +IHG VI       +F++  ++D+Y KC  ++ A  +F ++ ++  V+W 
Sbjct: 531 AHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWN 590

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           +II     HG AE+TL L+ EM+  GVKP+ VTFV L+ ACSH G V +G+  F+ ++++
Sbjct: 591 AIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFR-LMQE 649

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YGI PSL+HY C++DLL R+G+L+ A   IK MP +PD   W ALL AC+ H N E+G  
Sbjct: 650 YGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKF 709

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            ++ L  +  ++   Y+LLSN+YA+   W+ V KVR L     +KK PG+S IE  +   
Sbjct: 710 ASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVD 769

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
           +FY G  SHP   EI+E L  L A+MK  GY+PD S VL D+E+ EKE  L  HSERLA+
Sbjct: 770 VFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAI 829

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+G++ + P + +R+ KNLRVCGDCH   K ISRIT+REIVVRD+ R+HHFKDG CSC D
Sbjct: 830 AFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGD 889

Query: 609 FW 610
           +W
Sbjct: 890 YW 891



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 179/394 (45%), Gaps = 36/394 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LHA ++  G  Q   +   L++ Y     V  +    +++PQ+D  +W S+++AY   
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHN 195

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + I  F  +L + +++PD + F  ++KACG+L     G+++H       F  +  V
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRRIHCWAFKLGFQWNVFV 252

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SL+ MY++ G    AR++FD +  ++  SW AM+S                       
Sbjct: 253 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMIS----------------------- 289

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                   GL+Q+ N   A     EMR EG+ + + + + SI+  C     +     IH 
Sbjct: 290 --------GLIQNGNAAQALDVLDEMRLEGIKM-NFVTVVSILPVCPQLGDISTAMLIHL 340

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            VI  G E  LF+SNA+++MYAK  ++  A+  F +M   DVVSW SII    Q+     
Sbjct: 341 YVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVT 400

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
               + +M   G +P+ +T V L    +        R +   ++    +   +     ++
Sbjct: 401 AHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVV 460

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           D+ ++ G LD A  + + +  + D  +W  L++ 
Sbjct: 461 DMYAKLGLLDSAHKVFEIILVK-DVISWNTLITG 493



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 158/337 (46%), Gaps = 45/337 (13%)

Query: 105 HFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFD 164
           +F+F S  K       T   K +HA  V++       + + LV++YA  G  + +R  FD
Sbjct: 123 NFLFDSSTK-------TPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFD 175

Query: 165 SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS 224
            I  K+  +W +M+SAY  +G   +A+  F Q               L+ S    D FY+
Sbjct: 176 QIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQL--------------LLVSEIRPD-FYT 220

Query: 225 FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284
           F            P VL     AC     L  G++IH     LG++  +F++ +++ MY+
Sbjct: 221 F------------PPVLK----ACG---TLVDGRRIHCWAFKLGFQWNVFVAASLIHMYS 261

Query: 285 KCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVG 344
           +      A+ +F  M  +D+ SW ++I G  Q+G A + L + DEM   G+K N VT V 
Sbjct: 262 RFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVS 321

Query: 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE 404
           ++  C  +G +     +   +I+ +G+   L     L+++ ++ G+L++A    + M F 
Sbjct: 322 ILPVCPQLGDISTAMLIHLYVIK-HGLEFDLFVSNALINMYAKFGNLEDARKAFQQM-FI 379

Query: 405 PDEPTWAALLSACKHHRN--TEMGTRVANHLLSLKPE 439
            D  +W ++++A + + +  T  G  V   L   +P+
Sbjct: 380 TDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPD 416


>gi|224121210|ref|XP_002318526.1| predicted protein [Populus trichocarpa]
 gi|222859199|gb|EEE96746.1| predicted protein [Populus trichocarpa]
          Length = 552

 Score =  434 bits (1117), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 222/593 (37%), Positives = 335/593 (56%), Gaps = 67/593 (11%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           +I  Y +      A  L ++MP+RD  SW  +LT Y +    +   ++F  M       P
Sbjct: 1   MISGYLRNHKFDLARDLFDKMPERDLFSWNVMLTGYVRNRDLKTARALFERM-------P 53

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           +                                  D V  ++++  YA+ G  + AR +F
Sbjct: 54  ER---------------------------------DIVSWNAMLSGYAQNGFVDEAREIF 80

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE--------------------------QA 197
             + LKN +SW  +L+AY ++GR +DA  +FE                            
Sbjct: 81  YKMPLKNGISWNGLLAAYVQNGRIEDAKRLFESKMDWTLVSWNCLMGGFVRKRRNLFDNM 140

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P R+   W+A+++G  Q+    +A + F+EM+R+  + ++    +  +  C+N A LELG
Sbjct: 141 PQRDSISWSAMIAGYSQNGCSEEALHFFVEMQRD-CERLNRSSFTCALSTCSNIAALELG 199

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           +Q+H  ++  GY++  ++ NA++ MY KC  I  A+D F  +  KDVVSW ++I G A+H
Sbjct: 200 RQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARH 259

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G  EE L +++ M + G++P++ T V ++ ACSH GLV +G + F SM  DYGIT  L H
Sbjct: 260 GFGEEALTVFELMKTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLVH 319

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
           YTC++DLL R+G L+EA+NL+K MPFEPD  TW ALL A + H NTE+G + A  +  ++
Sbjct: 320 YTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEME 379

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
           P +   YILLS +YA++  W    K+R  M    VKK PGYS++E     H F  G+TSH
Sbjct: 380 PHNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKVPGYSWLEVQNKIHTFKVGDTSH 439

Query: 498 PLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVP 557
           P  D+I+  L E+D ++K+ GY+  T+ V HD+E++EK   L +HSE+LAVAYG+L    
Sbjct: 440 PHTDKIYTFLEEMDLKLKQEGYISSTNLVFHDVEEEEKVHMLKYHSEKLAVAYGILYIPA 499

Query: 558 GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           G  +RV+KNLRVC DCH  +K IS+I  R I++RD  R+H+F+ G CSC DFW
Sbjct: 500 GRPIRVIKNLRVCEDCHNAIKYISKIVGRLIILRDNHRFHYFEGGSCSCRDFW 552



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 96/220 (43%), Gaps = 8/220 (3%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH +++K G      + N L+  Y KC  +  A    +E+ ++D VSW +++  Y + 
Sbjct: 200 RQLHCRLVKAGYQTGWYVGNALLAMYCKCGSIDEARDAFQEILEKDVVSWNTMIHGYARH 259

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ +++F  M     ++PD     S++ AC   G    G +              +V
Sbjct: 260 GFGEEALTVFELM-KTTGIRPDDATMVSVLAACSHAGLVDQGSEYFYSMNRDYGITAKLV 318

Query: 143 K-SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGR----KKDAMEIFEQ 196
             + +VD+  + G    A+ +  ++  + ++ +W A+L A    G     +K A  IFE 
Sbjct: 319 HYTCMVDLLGRAGQLEEAQNLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAQIIFEM 378

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
            P  N  ++  L      S    DA    +EMR +GV  V
Sbjct: 379 EP-HNSGMYILLSKLYAASGRWSDAGKMRLEMRNKGVKKV 417


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/589 (35%), Positives = 340/589 (57%), Gaps = 34/589 (5%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           ++ +HA ++  G  Q   + N L+  Y +   +  A+ L + +  RD  +W+ ++  + +
Sbjct: 19  IRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGFAK 78

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
           A       + F  +L    + PD++    +++ C      ++G+ +H   +      D  
Sbjct: 79  AGDHAGCYATFRELLRCG-VTPDNYTLPFVIRTCRDRTDLQIGRVIHDVVLKHGLLSDHF 137

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V +SLVDMYAKC +                                +DA  +FE+   ++
Sbjct: 138 VCASLVDMYAKCIVV-------------------------------EDAQRLFERMLSKD 166

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           L  WT ++ G     N  ++   F  MR EGV + D + + ++V ACA    +   +  +
Sbjct: 167 LVTWTVMI-GAYADCNAYESLVLFDRMREEGV-VPDKVAMVTVVNACAKLGAMHRARFAN 224

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             ++  G+   + +  A++DMYAKC  + +A+++F RM+ K+V+SW+++I     HG+ +
Sbjct: 225 DYIVRNGFSLDVILGTAMIDMYAKCGSVESAREVFDRMKEKNVISWSAMIAAYGYHGRGK 284

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           + + L+  M+S  + PN VTFV L+YACSH GL+ +G + F SM E++ + P ++HYTC+
Sbjct: 285 DAIDLFHMMLSCAILPNRVTFVSLLYACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCM 344

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL R+G LDEA  LI+AM  E DE  W+ALL AC+ H   E+  + AN LL L+P++P
Sbjct: 345 VDLLGRAGRLDEALRLIEAMTVEKDERLWSALLGACRIHSKMELAEKAANSLLELQPQNP 404

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
             Y+LLSN+YA A  W+ V+K R +M+  ++KK PG+++IE    ++ F  G+ SHP   
Sbjct: 405 GHYVLLSNIYAKAGKWEKVAKFRDMMTQRKLKKIPGWTWIEVDNKTYQFSVGDRSHPQSK 464

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           EI+E+L  L  +++  GYVPDT  VL D+E++ K+  L+ HSE+LA+A+GL+    G  +
Sbjct: 465 EIYEMLMSLIKKLEMAGYVPDTDFVLQDVEEEVKQEMLYTHSEKLAIAFGLIAIPEGEPI 524

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+ KNLRVCGDCH   KM+S I +R I+VRDA R+HHF DG CSC D+W
Sbjct: 525 RISKNLRVCGDCHTFSKMVSSIMRRSIIVRDANRFHHFNDGTCSCGDYW 573


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/579 (38%), Positives = 345/579 (59%), Gaps = 12/579 (2%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDH------VSWASILTAYNQANLPQKTISIFSTM 95
           + L+ A+      + A  LLEEM +RD       ++W  +++  N++   +  +   +TM
Sbjct: 89  SALVAAHAARGDAEGAWRLLEEM-RRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATM 147

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
                L+PD    +  + A G +G   +G+Q+H   V +    D  V ++L+DMY KCG 
Sbjct: 148 HGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQ 207

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR----NLFLWTALVSG 211
                 VFD     +  S  A+++  +R+ +  +A+ +F++   R    N+  WT++V+ 
Sbjct: 208 AAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVAC 267

Query: 212 LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271
            VQ+  +++A   F EM+ +G +  + + +  ++ A AN A L  G+  H   +  G+  
Sbjct: 268 CVQNGKDLEAVEFFREMQAQGTE-PNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLH 326

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
            +++S+A+VDMYAKC  +  A+ IF  M  ++VVSW ++I G A +G+A   + ++  M+
Sbjct: 327 DVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSML 386

Query: 332 SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
               KP+ VTF  L+ AC+  GL  +GR  FK M  +YG++P ++HY C++ LL R+G L
Sbjct: 387 KCKQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKL 446

Query: 392 DEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVY 451
           DEA +LI  MPFEPD   W +LL +C+ H N ++    A  L  L+PE+  +Y+LLSN+Y
Sbjct: 447 DEAYDLISDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPENAGNYVLLSNIY 506

Query: 452 ASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELD 511
           AS  MW  V++VR++M  + +KKE G S+IE     H+  AG+ SHP+   I E + +L+
Sbjct: 507 ASKKMWDRVNRVREMMKDVGLKKEKGCSWIEIKNKVHMLLAGDDSHPMMTAIIEKINQLN 566

Query: 512 AEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCG 571
            +M++ G+VP T  VLHD+E++EK+  L  HSE+LAVA GL+ + PGT LRV+KNLR+CG
Sbjct: 567 IQMRKLGFVPSTDFVLHDVEEQEKDDILAVHSEKLAVALGLISTSPGTTLRVIKNLRICG 626

Query: 572 DCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           DCH  MK IS    REI VRD  R+HHF  GKCSC DFW
Sbjct: 627 DCHEAMKFISSFEGREISVRDTNRFHHFSGGKCSCGDFW 665



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 136/287 (47%), Gaps = 11/287 (3%)

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162
           PD  +  +  K+C +L    L + +HA   +S    D  V SSL+  Y + G   NARA+
Sbjct: 18  PDPHLLPTAFKSCPTL---PLARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARAL 74

Query: 163 FDSI--KLKNSVSWTAMLSAYARSGRKKDAMEIFEQ-----APVRNLFLWTALVSGLVQS 215
           FD +    +  V W+A+++A+A  G  + A  + E+         N+  W  LVSGL +S
Sbjct: 75  FDGMPRPQRTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRS 134

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI 275
               DA  +   M  EG+   D   +S  + A  +  ++ +G+Q+HG  +  G  +   +
Sbjct: 135 GRARDAVVALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACV 194

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
             A++DMY KC        +F      DV S  ++I G +++ Q  E L L+ E V  GV
Sbjct: 195 VTALIDMYGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGV 254

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
           + N V++  ++  C   G   +  + F+ M +  G  P+     C+L
Sbjct: 255 ELNVVSWTSIVACCVQNGKDLEAVEFFREM-QAQGTEPNSVTIPCVL 300



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           ++ H   ++ G      + + L+D Y KC  V+ A  + + M  R+ VSW +++  Y   
Sbjct: 313 RSAHCFALRKGFLHDVYVSSALVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMY 372

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----KQVHACFVLSP 135
                 + +F +ML   K +PD   F  L+ AC   G T  G    K++H  + +SP
Sbjct: 373 GEAVNAVWMFHSMLKC-KQKPDMVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSP 428


>gi|298204516|emb|CBI23791.3| unnamed protein product [Vitis vinifera]
          Length = 615

 Score =  434 bits (1116), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 210/513 (40%), Positives = 314/513 (61%), Gaps = 3/513 (0%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           L  D+F    ++K+C  L    +G+ VH   +      D  V +SL+DMY KCG+  +AR
Sbjct: 103 LLGDNFTLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDAR 162

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            +FD + +++  SW A+++ Y + G    A ++FE+   RN+  WTA++SG  Q+     
Sbjct: 163 KLFDKMIVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQ 222

Query: 221 AFYSFIEMRREGVDIVDPLV-LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           A   F EM ++G ++    V + S++ ACA  A LE G++IH     +G      +  A+
Sbjct: 223 ALGLFDEMLQDGSEMKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTAL 282

Query: 280 VDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
             MYAKC  ++ A+  F  + +  K++++W ++I   A HG   E +++++ M+ AGV+P
Sbjct: 283 AGMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQP 342

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           + VTF+GL+  CSH GL+  G   F  M   + + P ++HY C++DLL R+G L EA+ L
Sbjct: 343 DAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKEL 402

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           I  MP +     W ALL+AC+ HRN E+    A  L  L+P++  +Y+LLSN+YA A MW
Sbjct: 403 ISQMPMQAGPSVWGALLAACRSHRNLEIAELAARRLFVLEPDNSGNYVLLSNLYAEAGMW 462

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
           + V K+R L+    +KK PG S+IE    SH+F   + SHP   EI++ L  L  ++K  
Sbjct: 463 EEVKKLRALLKYQGMKKSPGCSWIEINGKSHLFMGADKSHPQAKEIYKFLEALPEKIKMA 522

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GY+PDTS VLHD+ ++EKE  L  HSE+LA+A+GLL + PG VLRV KNLR+CGDCH   
Sbjct: 523 GYIPDTSFVLHDISEEEKEYNLTTHSEKLAIAFGLLNTRPGVVLRVTKNLRICGDCHAAT 582

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K IS+I +REI+VRD  R+H FKDG CSC D+W
Sbjct: 583 KFISKIYEREIIVRDLNRFHCFKDGSCSCGDYW 615



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 121/291 (41%), Gaps = 49/291 (16%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLA-LDK 100
           N LI  Y K   +  A  L E M  R+ VSW ++++ Y Q    ++ + +F  ML    +
Sbjct: 177 NALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSE 236

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           ++P+     S++ AC    A   G+++H          +  V+++L  MYAKC     AR
Sbjct: 237 MKPNWVTIVSVLPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEAR 296

Query: 161 AVFDSIKL--KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
             FD I    KN ++W  M++AYA  G   +A+ IFE                       
Sbjct: 297 CCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFEN---------------------- 334

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG-------KQIHGLVIALGYES 271
                    M R GV   D +    ++  C++  +++ G         IH +   + + +
Sbjct: 335 ---------MLRAGVQ-PDAVTFMGLLSGCSHSGLIDAGLNHFNDMGTIHSVEPRVEHYA 384

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS-WTSIIVGTAQHGQAE 321
           C      +VD+  +   ++ AK++  +M  +   S W +++     H   E
Sbjct: 385 C------VVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLE 429



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 86/207 (41%), Gaps = 26/207 (12%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--R 67
           L  CA+       + +H     +GLH    +   L   Y KC  +  A    + + Q  +
Sbjct: 248 LPACAQSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGK 307

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           + ++W +++TAY       + +SIF  ML    +QPD   F  L+  C   G    G   
Sbjct: 308 NLIAWNTMITAYASHGCGVEAVSIFENMLRAG-VQPDAVTFMGLLSGCSHSGLIDAG--- 363

Query: 128 HACFVLSPFCDDDVVKS---------SLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAM 177
                L+ F D   + S          +VD+  + G    A+ +   + ++   S W A+
Sbjct: 364 -----LNHFNDMGTIHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGAL 418

Query: 178 LSAYARSGRKKDAMEIFEQAPVRNLFL 204
           L+A  RS R    +EI E A  R LF+
Sbjct: 419 LAA-CRSHRN---LEIAELA-ARRLFV 440


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 218/605 (36%), Positives = 342/605 (56%), Gaps = 38/605 (6%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+ AY K   +Q      + MP RD VS+ + +  ++  + PQ+++ +F  M   +  
Sbjct: 93  NALLSAYAKSGSIQNLKATFDRMPFRDSVSYNTTIAGFSGNSCPQESLELFKRM-QREGF 151

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +P  +   S++ A   L   R GKQ+H   ++  F  +  + ++L DMYAKCG    AR 
Sbjct: 152 EPTEYTIVSILNASAQLLDLRYGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARW 211

Query: 162 VFDSIKLKNSVSWTAMLSAYARSG-----------------------------------R 186
           +FD +  KN VSW  M+S YA++G                                   R
Sbjct: 212 LFDCLTKKNLVSWNLMISGYAKNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGR 271

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
             +A  +F +   +++  WTA++ G  ++  E DA   F EM  E ++  D   LSS+V 
Sbjct: 272 VDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNEMLLEHIE-PDSYTLSSVVS 330

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           +CA  A L  G+ +HG  I  G  + L +S+A++DMY+KC  I  A+ +F  M  ++VVS
Sbjct: 331 SCAKLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVS 390

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W ++IVG AQ+G  ++ L L++ M+    KP+ VTF+G++ AC H   + +G++ F S+ 
Sbjct: 391 WNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILSACLHCNWIEQGQEYFDSIS 450

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             +G+TP+L HY C+++LL R+G +++A  LIK M  +PD   W+ LLS C    +    
Sbjct: 451 NQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDFLIWSTLLSICSTKGDIVNA 510

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
              A HL  L P     YI+LSN+YAS   W+ V+ VR LM    VKK  G+S+IE    
Sbjct: 511 EVAARHLFELDPTIAVPYIMLSNMYASMGRWKDVASVRNLMKSKNVKKFAGFSWIEIDNE 570

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            H F + + +HP  ++I+E L  L  +++  G+ P+T+ VLHD+ + EK + + +HSE+L
Sbjct: 571 VHRFTSEDRTHPESEDIYEKLNMLIGKLQEEGFTPNTNLVLHDVGEDEKFKSICFHSEKL 630

Query: 547 AVAYGLLKSVPG-TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           A+A+GL+K   G + +R++KN+R+C DCH  MK  SRI  R+I++RD+ R+HHF  GKCS
Sbjct: 631 ALAFGLIKKPNGISPIRIIKNIRICNDCHEFMKFASRIIGRQIILRDSNRFHHFSTGKCS 690

Query: 606 CNDFW 610
           CND W
Sbjct: 691 CNDNW 695



 Score =  148 bits (373), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 154/282 (54%), Gaps = 9/282 (3%)

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  + + L+ +YAK G   +A+ +FD +  ++  SW A+LSAYA+SG  ++    F++ P
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            R+   +   ++G   +    ++   F  M+REG +  +  ++ SI+ A A    L  GK
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIV-SILNASAQLLDLRYGK 175

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           QIHG +I   +   +FI NA+ DMYAKC +I  A+ +F  + +K++VSW  +I G A++G
Sbjct: 176 QIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNG 235

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
           Q E+ + L  +M  +G  P++VT   +I A    G V + R++F    E       +  +
Sbjct: 236 QPEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKE-----KDIVCW 290

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPF---EPDEPTWAALLSAC 417
           T ++   +++G  ++A  L   M     EPD  T ++++S+C
Sbjct: 291 TAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSC 332



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H + I  GL+    + + LID Y KC  +  A  +   MP R+ VSW +++    Q 
Sbjct: 342 QAVHGKSILAGLNNNLLVSSALIDMYSKCGFIDDARSVFNLMPTRNVVSWNAMIVGCAQN 401

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115
              +  + +F  ML   K +PD+  F  ++ AC
Sbjct: 402 GHDKDALELFENMLQ-QKFKPDNVTFIGILSAC 433


>gi|225427576|ref|XP_002268530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Vitis vinifera]
          Length = 631

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 234/607 (38%), Positives = 358/607 (58%), Gaps = 20/607 (3%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLI---DAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           +K LHAQ+IK       PL    +    A      + YA  +   M + +  S+ +++ A
Sbjct: 27  LKQLHAQMIKTA-QIRDPLAAAELLRFSAVSDHRDLDYARKIFRSMHRPNCFSYNTLIRA 85

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
            +++N P   + +F  M+    ++P+ F F S+ KACG     R G+QVH   V      
Sbjct: 86  LSESNDPCDALLVFIEMVEDCSVEPNCFTFPSVFKACGRAERLREGRQVHGLAVKFGLDS 145

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVF---------DSIKLK------NSVSWTAMLSAYAR 183
           D+ V S++V MY  CG+  +A  +F         D I+ K      + V W  M+  Y R
Sbjct: 146 DEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDGCDGIRDKKRRVDGDVVLWNVMIDGYVR 205

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            G  + A  +F++ P R++  W  +++G  QS +  +A   F EM+   V   + + L S
Sbjct: 206 IGELEVARNLFDEMPQRSVVSWNVMIAGYAQSGHFKEAVEVFREMQMAEVP-PNYVTLVS 264

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++ A +    LELGK +H   +         + +A++DMYAKC  I  A  +F  + +++
Sbjct: 265 VLPAMSRLGALELGKWVHLYAVRNNIGVDDVLGSALIDMYAKCGSIEKALQVFEGLPKRN 324

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           VV+W++II G A HG+A++TL  +++M  AGV P++VT++GL+ ACSH GLV +GR  F 
Sbjct: 325 VVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVMPSDVTYIGLLSACSHAGLVNEGRWFFD 384

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
            M+   G+ P ++HY C++DLL R+G L+E+E LI  MP +PD+  W ALL ACK H N 
Sbjct: 385 HMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEELILNMPIKPDDVIWKALLGACKMHGNV 444

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           EMG RVA HL+ L P D  SY+ LSN+YAS   W+ V+KVR +M  M+V+K+PG S+IE 
Sbjct: 445 EMGKRVAEHLMELAPHDSGSYVALSNIYASLGNWEGVAKVRLMMKEMDVRKDPGCSWIEL 504

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
               H F   + SHP   +I  +L E+   +   GY P+T+ VL +M++++KE  L +HS
Sbjct: 505 DGVIHEFLVEDDSHPKSKKIHSMLQEMSRNLILVGYRPNTTQVLTNMDEEDKESSLNYHS 564

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           E++A+A+GL+ + P T LR+ KNLR+C DCH  +K+IS+I KR+I+VRD  R+HHF +G 
Sbjct: 565 EKIAIAFGLISTQPQTPLRITKNLRICEDCHSSIKLISKIYKRKIIVRDRKRFHHFVNGS 624

Query: 604 CSCNDFW 610
           CSC D+W
Sbjct: 625 CSCMDYW 631



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 95/428 (22%), Positives = 175/428 (40%), Gaps = 102/428 (23%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAH----------- 58
            + C R +     + +H   +K GL     + + ++  Y  C +++ AH           
Sbjct: 119 FKACGRAERLREGRQVHGLAVKFGLDSDEFVVSNVVRMYLSCGVMEDAHRLFYRRVFVDG 178

Query: 59  -----------------------------------HLLEEMPQRDHVSWASILTAYNQAN 83
                                              +L +EMPQR  VSW  ++  Y Q+ 
Sbjct: 179 CDGIRDKKRRVDGDVVLWNVMIDGYVRIGELEVARNLFDEMPQRSVVSWNVMIAGYAQSG 238

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
             ++ + +F  M  + ++ P++    S++ A   LGA  LGK VH   V +    DDV+ 
Sbjct: 239 HFKEAVEVFREM-QMAEVPPNYVTLVSVLPAMSRLGALELGKWVHLYAVRNNIGVDDVLG 297

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           S+L+DMYAKCG    A  VF+ +  +N V+W+ +++  A  GR KD ++ FE      + 
Sbjct: 298 SALIDMYAKCGSIEKALQVFEGLPKRNVVTWSTIIAGLAMHGRAKDTLDHFEDMERAGVM 357

Query: 204 LWTALVSGLVQS------RNEIDAFY------SFIEMRREG----VDIV----------- 236
                  GL+ +       NE   F+      S +E R E     VD++           
Sbjct: 358 PSDVTYIGLLSACSHAGLVNEGRWFFDHMVRVSGLEPRIEHYGCMVDLLGRAGLLEESEE 417

Query: 237 ---------DPLVLSSIVGACANFAVLELGKQIHGLVIALG-YESCLFISNAIVDMYAKC 286
                    D ++  +++GAC     +E+GK++   ++ L  ++S  ++  A+ ++YA  
Sbjct: 418 LILNMPIKPDDVIWKALLGACKMHGNVEMGKRVAEHLMELAPHDSGSYV--ALSNIYASL 475

Query: 287 SDIIAAKDIFGRMRRKDV-----VSWTSI-------IVGTAQHGQAEETLALYDEM---- 330
            +      +   M+  DV      SW  +       +V    H ++++  ++  EM    
Sbjct: 476 GNWEGVAKVRLMMKEMDVRKDPGCSWIELDGVIHEFLVEDDSHPKSKKIHSMLQEMSRNL 535

Query: 331 VSAGVKPN 338
           +  G +PN
Sbjct: 536 ILVGYRPN 543


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/590 (36%), Positives = 339/590 (57%), Gaps = 35/590 (5%)

Query: 23  KTLHAQIIKLG-LHQYG-PLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           K +HA +++ G   + G PL   LID Y KC+ + YA  + + + +   +SW +++ AY 
Sbjct: 245 KAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAYI 304

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
             N   + + +F  ML  + + P+     SLVK CG+ GA  LGK +HA  + + F    
Sbjct: 305 HCNNLNEGVRLFVKMLG-EGMFPNEITMLSLVKECGTAGALELGKLLHAFTLRNGFTLSL 363

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           V+ ++ +DMY KC                               G  + A  +F+    +
Sbjct: 364 VLATAFIDMYGKC-------------------------------GDVRSARSVFDSFKSK 392

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           +L +W+A++S   Q+    +AF  F+ M   G+   +   + S++  CA    LE+GK I
Sbjct: 393 DLMMWSAMISSYAQNNCIDEAFDIFVHMTGCGIR-PNERTMVSLLMICAKAGSLEMGKWI 451

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H  +   G +  + +  + VDMYA C DI  A  +F     +D+  W ++I G A HG  
Sbjct: 452 HSYIDKQGIKGDMILKTSFVDMYANCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHG 511

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           E  L L++EM + GV PN++TF+G ++ACSH GL+ +G++LF  M+ ++G TP ++HY C
Sbjct: 512 EAALELFEEMEALGVTPNDITFIGALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGC 571

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DLL R+G LDEA  LIK+MP  P+   + + L+ACK H+N ++G   A   LSL+P  
Sbjct: 572 MVDLLGRAGLLDEAHELIKSMPMRPNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPHK 631

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
               +L+SN+YASA  W  V+ +R+ M    + KEPG S IE     H F  G+  HP  
Sbjct: 632 SGYNVLMSNIYASANRWGDVAYIRRAMKDEGIVKEPGVSSIEVNGLLHEFIMGDREHPDA 691

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
            +++E++ E+  +++  GY PD S VLH++++++K   L +HSE+LA+AYGL+ + PG  
Sbjct: 692 KKVYEMIDEMREKLEDAGYTPDVSCVLHNIDKEKKVSALNYHSEKLAMAYGLISTAPGVP 751

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +R+VKNLRVC DCH   K++S+I  REI+VRD  R+HHFK+G CSC D+W
Sbjct: 752 IRIVKNLRVCDDCHNATKLLSKIYGREIIVRDRNRFHHFKEGSCSCCDYW 801



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 197/435 (45%), Gaps = 39/435 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C      L  + +H  ++K G H    + N LI  Y +   +  A  L +++  +D 
Sbjct: 131 LKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDV 190

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW++++ +Y+++ L  + + +   M  + +++P      S+      L   +LGK +HA
Sbjct: 191 VSWSTMIRSYDRSGLLDEALDLLRDMHVM-RVKPSEIGMISITHVLAELADLKLGKAMHA 249

Query: 130 CFVLSPFCDDDVVK--SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
             + +  C    V   ++L+DMY KC     AR VFD +   + +SW             
Sbjct: 250 YVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISW------------- 296

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
                             TA+++  +   N  +    F++M  EG+   + + + S+V  
Sbjct: 297 ------------------TAMIAAYIHCNNLNEGVRLFVKMLGEGM-FPNEITMLSLVKE 337

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
           C     LELGK +H   +  G+   L ++ A +DMY KC D+ +A+ +F   + KD++ W
Sbjct: 338 CGTAGALELGKLLHAFTLRNGFTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMW 397

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           +++I   AQ+   +E   ++  M   G++PNE T V L+  C+  G +  G K   S I+
Sbjct: 398 SAMISSYAQNNCIDEAFDIFVHMTGCGIRPNERTMVSLLMICAKAGSLEMG-KWIHSYID 456

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
             GI   +   T  +D+ +  G +D A  L  A   + D   W A++S    H + E   
Sbjct: 457 KQGIKGDMILKTSFVDMYANCGDIDTAHRLF-AEATDRDISMWNAMISGFAMHGHGEAAL 515

Query: 428 RVANHL--LSLKPED 440
            +   +  L + P D
Sbjct: 516 ELFEEMEALGVTPND 530



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 167/344 (48%), Gaps = 37/344 (10%)

Query: 75  ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134
           ++T+Y + N P     I++ M   D  + D+FV  S++KAC  + +  LG++VH   V +
Sbjct: 95  LITSYIKNNCPADAAKIYAYMRGTDT-EVDNFVIPSVLKACCLIPSFLLGQEVHGFVVKN 153

Query: 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
            F  D  V ++L+ MY++ G    AR +FD I+ K+ VSW+ M+ +Y RSG   +A+++ 
Sbjct: 154 GFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLL 213

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
               V                            MR +  +I     + SI    A  A L
Sbjct: 214 RDMHV----------------------------MRVKPSEI----GMISITHVLAELADL 241

Query: 255 ELGKQIHGLVIALGY--ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
           +LGK +H  V+  G   +S + +  A++DMY KC ++  A+ +F  + +  ++SWT++I 
Sbjct: 242 KLGKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIA 301

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
                    E + L+ +M+  G+ PNE+T + L+  C   G +  G KL  +     G T
Sbjct: 302 AYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTAGALELG-KLLHAFTLRNGFT 360

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            SL   T  +D+  + G +  A ++  +     D   W+A++S+
Sbjct: 361 LSLVLATAFIDMYGKCGDVRSARSVFDSFK-SKDLMMWSAMISS 403



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/231 (24%), Positives = 116/231 (50%), Gaps = 5/231 (2%)

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLSSIVGACANFAVLELGKQ 259
           N  + + L++  +++    DA   +  MR  G D  VD  V+ S++ AC       LG++
Sbjct: 88  NAAIHSFLITSYIKNNCPADAAKIYAYMR--GTDTEVDNFVIPSVLKACCLIPSFLLGQE 145

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           +HG V+  G+   +F+ NA++ MY++   +  A+ +F ++  KDVVSW+++I    + G 
Sbjct: 146 VHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGL 205

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS-LQHY 378
            +E L L  +M    VKP+E+  + + +  + +  +  G+ +   ++ +     S +   
Sbjct: 206 LDEALDLLRDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLC 265

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           T L+D+  +  +L  A  +   +  +    +W A+++A  H  N   G R+
Sbjct: 266 TALIDMYVKCENLAYARRVFDGLS-KASIISWTAMIAAYIHCNNLNEGVRL 315


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/577 (37%), Positives = 336/577 (58%), Gaps = 10/577 (1%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMP----QRDHVSWASILTAYNQANLPQKTISIFSTMLA 97
           + L+ AY +   V  A  L  EM     Q + +SW  ++  +N + L  + + +F  M  
Sbjct: 184 SALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM-H 242

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
           L   +PD    +S++ A G L    +G  +H   +      D  V S+L+DMY KC   +
Sbjct: 243 LRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTS 302

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR----NLFLWTALVSGLV 213
               VFD +   +  S  A +   +R+G+ + ++ +F Q   +    N+  WT++++   
Sbjct: 303 EMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCS 362

Query: 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
           Q+  +I+A   F EM+  GV   + + +  ++ AC N A L  GK  H   +  G  + +
Sbjct: 363 QNGRDIEALELFREMQIAGVK-PNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDV 421

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
           ++ +A++DMYAKC  I A++  F  +  K++V W ++I G A HG+A+E + ++D M  +
Sbjct: 422 YVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRS 481

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
           G KP+ ++F  ++ ACS  GL  +G   F SM   YGI   ++HY C++ LLSR+G L++
Sbjct: 482 GQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQ 541

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453
           A  +I+ MP  PD   W ALLS+C+ H N  +G   A  L  L+P +P +YILLSN+YAS
Sbjct: 542 AYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYILLSNIYAS 601

Query: 454 AAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAE 513
             MW  V++VR +M    ++K PG S+IE     H+  AG+ SHP   +I E L +L  E
Sbjct: 602 KGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVHMLLAGDKSHPQMTQIIEKLDKLSME 661

Query: 514 MKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDC 573
           MK+ GY P+ + VL D+E+++KE+ L  HSE+LAV +GLL + PG  L+V+KNLR+CGDC
Sbjct: 662 MKKLGYFPEINFVLQDVEEQDKEQILCGHSEKLAVVFGLLNTPPGYPLQVIKNLRICGDC 721

Query: 574 HIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           H+V+K IS   +REI VRD  R+HHFK+G CSC D+W
Sbjct: 722 HVVIKFISSFERREIFVRDTNRFHHFKEGACSCGDYW 758



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/365 (32%), Positives = 187/365 (51%), Gaps = 7/365 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
            +  HA I+K GL     L   L+  Y        A  +L+ +P+ +  S+++++ A+++
Sbjct: 32  TRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSK 91

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
            +     +S FS ML    L PD+ V  S VKAC  L A +  +QVH    +S F  D  
Sbjct: 92  FHQFHHALSTFSQMLT-RGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSF 150

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ----A 197
           V+SSLV MY KC    +A  VFD +   + VSW+A+++AYAR G   +A  +F +     
Sbjct: 151 VQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSG 210

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
              NL  W  +++G   S    +A   F++M   G +  D   +SS++ A  +   L +G
Sbjct: 211 VQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFE-PDGTTISSVLPAVGDLEDLVMG 269

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
             IHG VI  G  S   +S+A++DMY KCS       +F +M   DV S  + I G +++
Sbjct: 270 ILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRN 329

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           GQ E +L L+ ++   G++ N V++  +I  CS  G   +  +LF+ M +  G+ P+   
Sbjct: 330 GQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREM-QIAGVKPNSVT 388

Query: 378 YTCLL 382
             CLL
Sbjct: 389 IPCLL 393



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 124/268 (46%), Gaps = 37/268 (13%)

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
           LD +Q  H +F  L     SL  TR   Q HA  + +   +D  + + L+  YA      
Sbjct: 11  LDSVQ--HTIFNCLNSTTASLSQTR---QAHAHILKTGLFNDTHLATKLLSHYANNMCFA 65

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
           +A  V D +   N  S++ ++ A+++  +   A+  F Q   R L               
Sbjct: 66  DATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGL--------------- 110

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
                            + D  VL S V ACA  + L+  +Q+HG+    G++S  F+ +
Sbjct: 111 -----------------MPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQS 153

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           ++V MY KC+ I  A  +F RM   DVVSW++++   A+ G  +E   L+ EM  +GV+P
Sbjct: 154 SLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQP 213

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           N +++ G+I   +H GL  +   +F  M
Sbjct: 214 NLISWNGMIAGFNHSGLYSEAVLMFLDM 241



 Score = 40.4 bits (93), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 33/170 (19%), Positives = 73/170 (42%), Gaps = 12/170 (7%)

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
           A L   +Q H  ++  G  +   ++  ++  YA       A  +   +   +V S++++I
Sbjct: 27  ASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFADATLVLDLVPEPNVFSFSTLI 86

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL-----FKSMI 366
              ++  Q    L+ + +M++ G+ P+       + AC+ +  +   R++          
Sbjct: 87  YAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFD 146

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            D  +  SL H      +  +   + +A  +   M FEPD  +W+AL++A
Sbjct: 147 SDSFVQSSLVH------MYIKCNQIRDAHRVFDRM-FEPDVVSWSALVAA 189


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 216/609 (35%), Positives = 357/609 (58%), Gaps = 23/609 (3%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL--VQYAHHLLEEMPQRDHVSWASILTAY 79
           +K +H++ IK G+     + N ++      +   + YA  L + +P+    SW  +   Y
Sbjct: 30  LKQIHSRTIKTGIICNPIIQNKILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIMFKGY 89

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
           ++   P+  +S++  ML  + ++PD + +  L K      A +LG+++H C V+    D 
Sbjct: 90  SRIACPKLGVSLYLEMLERN-VKPDCYTYPFLFKGFTRSVALQLGRELH-CHVVKYGLDS 147

Query: 140 DV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR--------------- 183
           +V   ++L++MY+ CGL + AR +FD     + V+W AM+S Y R               
Sbjct: 148 NVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISWTAIVTGF 207

Query: 184 --SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
             +G+   A + F + P R+   WTA++ G ++     +A   F EM+   +   D   +
Sbjct: 208 VNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIK-PDEFTM 266

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
            S++ ACA    LELG+ I   +     ++  F+ NA++DMY KC ++  A  IF  + +
Sbjct: 267 VSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSIFNTLPQ 326

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           +D  +WT+++VG A +G  EE L ++ +M+ A V P+EVT+VG++ AC+H G+V +G+K 
Sbjct: 327 RDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMVDEGKKF 386

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F SM   +GI P++ HY C++DLL ++GHL EA  +IK MP +P+   W ALL AC+ H+
Sbjct: 387 FASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLGACRIHK 446

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           + EM  R    +L L+P + + Y+L  N+YA+   W  + ++R++M    +KK PG S I
Sbjct: 447 DAEMAERAIEQILELEPNNGAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKKTPGCSLI 506

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E     H F AG+ SHP   EI+  L ++ +++K  GY P+TS V  D+ +++KE  ++ 
Sbjct: 507 EMNGIVHEFVAGDQSHPQTKEIYGKLNKMTSDLKIAGYSPNTSEVFLDIAEEDKENAVYR 566

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSE+LA+A+GL+ S PG  +R+VKNLR+C DCH V K++S++  RE++VRD TR+HHF+ 
Sbjct: 567 HSEKLAIAFGLINSGPGVTIRIVKNLRMCIDCHHVAKLVSKVYDREVIVRDRTRFHHFRH 626

Query: 602 GKCSCNDFW 610
           G CSC D+W
Sbjct: 627 GSCSCKDYW 635


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  433 bits (1114), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/592 (37%), Positives = 337/592 (56%), Gaps = 36/592 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP-QRDHVSWASILTAYNQ 81
           K +H   ++ G      +   ++D YGKC  + YA  + + M   ++ V+W++++ AY  
Sbjct: 240 KEIHGFCVRRGFVGDVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVV 299

Query: 82  ANLPQKTISIFSTMLAL--DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            +  ++ + +F  +L L  D +       A++++ C +L     G  +H   + S F  D
Sbjct: 300 CDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIKSGFVLD 359

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
            +V ++L+ MYAKCG+ N                                AM  F +  +
Sbjct: 360 LMVGNTLLSMYAKCGIING-------------------------------AMRFFNEMDL 388

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
           R+   +TA++SG VQ+ N  +    F+EM+  G++  +   L+S++ ACA+ A L  G  
Sbjct: 389 RDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGIN-PEKATLASVLPACAHLAGLHYGSC 447

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
            H   I  G+ +   I NA++DMYAKC  I  A+ +F RM ++ +VSW ++I+    HG 
Sbjct: 448 SHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGI 507

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
             E L L+D M S G+KP++VTF+ LI ACSH GLV +G+  F +M +D+GI P ++HY 
Sbjct: 508 GLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYA 567

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++DLLSR+G   E  + I+ MP EPD   W ALLSAC+ ++N E+G  V+  +  L PE
Sbjct: 568 CMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPE 627

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGE-TSHP 498
              +++LLSN+Y++   W   ++VR        +K PG S+IE     H F  G   SHP
Sbjct: 628 STGNFVLLSNMYSAVGRWDDAAQVRFTQKEQGFEKSPGCSWIEISGVVHTFLGGGYRSHP 687

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
              +I   L EL  EMKR GY  ++S V  D+E++EKER L +HSE+LA+A+G+L   P 
Sbjct: 688 QLTQISNKLDELLVEMKRLGYQAESSYVFQDVEEEEKERVLLYHSEKLAIAFGILSLSPD 747

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             + V KNLRVCGDCH  +K IS +TKR+I VRDA+R+HHFKDG C+C DFW
Sbjct: 748 KHIIVTKNLRVCGDCHTAIKFISLVTKRDITVRDASRFHHFKDGICNCGDFW 799



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/408 (24%), Positives = 183/408 (44%), Gaps = 45/408 (11%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQR--DHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           L+D Y  C  ++ A H+ ++MP R  + V W  ++ AY      ++ I ++  ML    +
Sbjct: 57  LVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYG-I 115

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNAR 160
            P+ F F  ++KAC +L     G+++H C +     + +V V ++LVD YAKCG  ++A+
Sbjct: 116 TPNRFTFPFVLKACSALKEASEGREIH-CDIKRLRLESNVYVSTALVDFYAKCGCLDDAK 174

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            VFD +  ++ V+W +M+S ++      D +                    LVQ +N++ 
Sbjct: 175 EVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARL-----------------LVQMQNDVS 217

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
              S I                 ++ A A    L  GK+IHG  +  G+   + +   I+
Sbjct: 218 PNSSTI---------------VGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGIL 262

Query: 281 DMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG---VK 336
           D+Y KC  I  A+ IF  M   K+ V+W++++          E L L+ +++      + 
Sbjct: 263 DVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGAYVVCDFMREALELFCQLLMLKDDVIV 322

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
            + VT   +I  C+++  +  G  L    I+  G    L     LL + ++ G ++ A  
Sbjct: 323 LSAVTLATVIRVCANLTDLSTGTCLHCYAIKS-GFVLDLMVGNTLLSMYAKCGIINGAMR 381

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTR--VANHLLSLKPEDPS 442
               M    D  ++ A++S    + N+E G R  +   L  + PE  +
Sbjct: 382 FFNEMDLR-DAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKAT 428



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 1/193 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +RVCA      T   LH   IK G      + NTL+  Y KC ++  A     EM  RD 
Sbjct: 332 IRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDA 391

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS+ +I++ Y Q    ++ + +F  M  L  + P+    AS++ AC  L     G   H 
Sbjct: 392 VSFTAIISGYVQNGNSEEGLRMFLEM-QLSGINPEKATLASVLPACAHLAGLHYGSCSHC 450

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             ++  F  D ++ ++L+DMYAKCG  + AR VFD +  +  VSW  M+ AY   G   +
Sbjct: 451 YAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLE 510

Query: 190 AMEIFEQAPVRNL 202
           A+ +F+      L
Sbjct: 511 ALLLFDNMQSEGL 523



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 134/279 (48%), Gaps = 35/279 (12%)

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSI--KLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
           DV    LVD+Y  C     AR VFD +  + KN V W  ++ AYA +G  ++A++++   
Sbjct: 51  DVPFEKLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLY--- 107

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
                  +  L  G+  +R      ++F            P VL     AC+       G
Sbjct: 108 -------YKMLGYGITPNR------FTF------------PFVLK----ACSALKEASEG 138

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           ++IH  +  L  ES +++S A+VD YAKC  +  AK++F +M ++DVV+W S+I G + H
Sbjct: 139 REIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLH 198

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
             + + +A     +   V PN  T VG++ A + V  +  G+++    +   G    +  
Sbjct: 199 EGSYDEVARLLVQMQNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRR-GFVGDVVV 257

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            T +LD+  +   +D A  +   M    +E TW+A++ A
Sbjct: 258 GTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAMVGA 296


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/610 (38%), Positives = 357/610 (58%), Gaps = 40/610 (6%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S +   +++CA  +     + LH  ++K G      +   L+ AY KC  +  A  L +E
Sbjct: 300 SSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKE 359

Query: 64  MPQRDHV-SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
                +V SW ++++ + Q +  ++ + +FS M     ++P+ F ++ ++ A   +  + 
Sbjct: 360 TGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEM-KRKGVRPNEFTYSVILTALPVISPS- 417

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
              +VHA  V + +     V ++L+D Y K G  + A  VF  I  K+ V+W+AML+ YA
Sbjct: 418 ---EVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYA 474

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           ++G  + A++IF +           L  G V+                      +    S
Sbjct: 475 QAGETEAAIKIFSE-----------LTKGGVKP---------------------NEFTFS 502

Query: 243 SIVGAC-ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           SI+  C A  A +  GKQ HG  I    +S L +S+A++ MYAK   I +A+++F R R 
Sbjct: 503 SILNVCAATTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQRE 562

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           KD+VSW S+I G AQHGQA + L ++ EM    VK + VTF+G+  AC+H GLV +G K 
Sbjct: 563 KDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKY 622

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F  M+ D  I P+ +H +C++DL SR+G L++A  +I  MP       W  +L+AC+ H+
Sbjct: 623 FDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHK 682

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
            TE+G   A  ++++ PED ++Y+LLSN+YA +  WQ  +KVRKLM+   VKKEPGYS+I
Sbjct: 683 KTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWI 742

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E    ++ F AG+ SHPLKD+I+  L +L   +K  GY PDTS VL D++ + KE  L  
Sbjct: 743 EVKNKTYAFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQ 802

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF-K 600
           HSERLA+A+GL+ +  G+ L ++KNLRVCGDCH+V+K+I++I +REIVVRD+ R+HHF  
Sbjct: 803 HSERLAIAFGLIATPKGSPLLIIKNLRVCGDCHVVIKLIAKIEEREIVVRDSNRFHHFSS 862

Query: 601 DGKCSCNDFW 610
           DG CSC DFW
Sbjct: 863 DGVCSCGDFW 872



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 124/462 (26%), Positives = 211/462 (45%), Gaps = 43/462 (9%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           M  S +   L+V A     L  + LH Q IK G      +  +L+D Y K    +   ++
Sbjct: 95  MDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNV 154

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
            +EM +R+ V+W ++++ Y + +L ++ +++F  M   +  QP+ F FA+ +      G 
Sbjct: 155 FDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQD-EGTQPNSFTFAAALGVLAEEGV 213

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
              G QVH   V +       V +SL+++Y KCG    AR +FD  ++K+ V+W +M+S 
Sbjct: 214 GGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISG 273

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           YA +G   +A+ +                            FYS   MR   V + +   
Sbjct: 274 YAANGLDLEALGM----------------------------FYS---MRLNHVRLSES-S 301

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
            +SI+  CAN   L   +Q+H  V+  G+     I  A++  Y+KC  ++ A  +F    
Sbjct: 302 FASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRLFKETG 361

Query: 301 -RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
              +VVSWT++I G  Q+   EE + L+ EM   GV+PNE T+  ++ A   +       
Sbjct: 362 FLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALPVISPSEVHA 421

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           ++ K+  E           T LLD   + G +DEA  +   +    D   W+A+L+    
Sbjct: 422 QVVKTNYERSSTVG-----TALLDAYVKLGKVDEAAKVFSGID-NKDIVAWSAMLAGYAQ 475

Query: 420 HRNTEMGTRVANHLL--SLKPEDPS-SYILLSNVYASAAMWQ 458
              TE   ++ + L    +KP + + S IL      +A+M Q
Sbjct: 476 AGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQ 517



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 180/378 (47%), Gaps = 36/378 (9%)

Query: 41  PNTLIDAYG--KCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
           PN  I  +G      + YAH+L ++ P RD  S+ S+L  +++    Q+   +F  +  L
Sbjct: 32  PNFRIYCFGAASSSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHL 91

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
             ++ D  +F+S++K   +L     G+Q+H   +   F DD  V +SLVD Y K     +
Sbjct: 92  G-MEMDCSIFSSVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKD 150

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
            R VFD +K +N V+WT ++S YAR+   ++ + +                         
Sbjct: 151 GRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTL------------------------- 185

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
                 F+ M+ EG    +    ++ +G  A   V   G Q+H +V+  G +  + +SN+
Sbjct: 186 ------FMRMQDEGTQ-PNSFTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNS 238

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++++Y KC ++  A+ +F +   K VV+W S+I G A +G   E L ++  M    V+ +
Sbjct: 239 LINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLS 298

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           E +F  +I  C+++  +    +L  S+++ YG        T L+   S+   + +A  L 
Sbjct: 299 ESSFASIIKLCANLKELRFTEQLHCSVVK-YGFVFDQNIRTALMVAYSKCMAMLDALRLF 357

Query: 399 KAMPFEPDEPTWAALLSA 416
           K   F  +  +W A++S 
Sbjct: 358 KETGFLGNVVSWTAMISG 375


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/601 (38%), Positives = 325/601 (54%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C         + +H   IK G      +   LID Y K   +  A  +LE +  +D 
Sbjct: 352 LRTCTYAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDV 411

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S++  Y Q    ++ +  F  M  L  + PD+   AS + AC  + A R G+Q+H+
Sbjct: 412 VSWTSMIAGYVQHEFCKEALETFKDM-QLFGIWPDNIGLASAISACAGIKAMRQGQQIHS 470

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
              +S +  D  +                               W A+++ YAR GR K+
Sbjct: 471 RVYVSGYSADVSI-------------------------------WNALVNLYARCGRSKE 499

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +FE    ++   W  +VSG  QS    +A   FI+M + GV   +     S + A A
Sbjct: 500 AFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVK-YNVFTFVSSISASA 558

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           N A ++ GKQIH  VI  G  S   ++NA++ +Y KC  I  AK  F  M  ++ VSW +
Sbjct: 559 NLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQFFEMSERNHVSWNT 618

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           II   +QHG   E L L+D+M   G+KPN+VTF+G++ ACSHVGLV +G   FKSM  ++
Sbjct: 619 IITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEGLGYFKSMSSEH 678

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI P   HY C++D+L R+G LD A   ++ MP   +   W  LLSAC+ H+N E+G   
Sbjct: 679 GIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSACRVHKNIEIGELA 738

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A +LL L+P D +SY+LLSN YA    W     VRK+M    V+KEPG S+IE     H 
Sbjct: 739 AKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEPGRSWIEVKNVVHA 798

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F+ G+  HPL  +I++ L +LD  + + GY+     + H+ E+++K+   F HSE+LAVA
Sbjct: 799 FFVGDRLHPLAHQIYKYLADLDDRLAKIGYIQGNYFLFHEKEKEQKDPTAFVHSEKLAVA 858

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GL+   P   LRV+KNLRVC DCH  MK  S +  REIV+RD  R+HHF +G CSC DF
Sbjct: 859 FGLMSLPPSMPLRVIKNLRVCNDCHTWMKFTSEVMGREIVLRDVYRFHHFNNGNCSCGDF 918

Query: 610 W 610
           W
Sbjct: 919 W 919



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 194/399 (48%), Gaps = 35/399 (8%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           V  +HA+ I  GL +     N LID Y K  LVQ A  + E++  RD+VSW ++L+ Y +
Sbjct: 61  VPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYAR 120

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
             L ++ + ++  M     + P  +V +S++ AC        G+ VHA       C + V
Sbjct: 121 NGLGEEAVGLYHQM-HCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETV 179

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V ++L+ +Y + G  + A  VF  +   + V++  ++S +A+ G  + A+EIFE      
Sbjct: 180 VGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFE------ 233

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                                    EMR  G    D + ++S++ ACA+   L  GKQ+H
Sbjct: 234 -------------------------EMRLSGW-TPDCVTIASLLAACASIGDLNKGKQLH 267

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             ++  G      I  +++D+Y KC  I+ A +IF    R +VV W  ++V   Q     
Sbjct: 268 SYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLA 327

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           ++  L+ +MV+AGV+PNE T+  L+  C++ G +  G ++    I+  G    +     L
Sbjct: 328 KSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKT-GFESDMYVSGVL 386

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           +D+ S+ G LD+A  +++ +    D  +W ++++    H
Sbjct: 387 IDMYSKYGWLDKARRILEVLE-AKDVVSWTSMIAGYVQH 424



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 191/407 (46%), Gaps = 35/407 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C +  +    + +HAQ+ K G      + N LI  Y +   +  A  +  EMP  D 
Sbjct: 150 LSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDR 209

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V++ ++++ + Q    +  + IF  M  L    PD    ASL+ AC S+G    GKQ+H+
Sbjct: 210 VTFNTLISRHAQCGNGESALEIFEEM-RLSGWTPDCVTIASLLAACASIGDLNKGKQLHS 268

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +    D +++ SL+D+Y KCG+                                 +
Sbjct: 269 YLLKAGMSPDYIIEGSLLDLYVKCGVI-------------------------------VE 297

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+EIF+     N+ LW  ++    Q  +   +F  F +M   GV   +      ++  C 
Sbjct: 298 ALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVR-PNEFTYPCLLRTCT 356

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               + LG+QIH L I  G+ES +++S  ++DMY+K   +  A+ I   +  KDVVSWTS
Sbjct: 357 YAGEINLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTS 416

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G  QH   +E L  + +M   G+ P+ +     I AC+ +  + +G+++  S +   
Sbjct: 417 MIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQI-HSRVYVS 475

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           G +  +  +  L++L +R G   EA +L +A+  + D+ TW  ++S 
Sbjct: 476 GYSADVSIWNALVNLYARCGRSKEAFSLFEAIEHK-DKITWNGMVSG 521



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 118/462 (25%), Positives = 203/462 (43%), Gaps = 71/462 (15%)

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC-GSLGATR 122
           M +R   S    LT +     P+K +S+F+  +   +       FA  ++ C GS+    
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCR-GLGSVDFACALRECRGSVKHWP 59

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           L   +HA  +     +D +  + L+D+YAK GL   AR VF+ +  +++VSW AMLS YA
Sbjct: 60  LVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYA 119

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           R+G  ++A+ ++ Q                               M   GV +  P VLS
Sbjct: 120 RNGLGEEAVGLYHQ-------------------------------MHCSGV-VPTPYVLS 147

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           S++ AC   A+ E G+ +H  V   G  S   + NA++ +Y +   +  A+ +F  M   
Sbjct: 148 SVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYC 207

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           D V++ ++I   AQ G  E  L +++EM  +G  P+ VT   L+ AC+ +G + KG++L 
Sbjct: 208 DRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIGDLNKGKQLH 267

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK----------------------- 399
             +++  G++P       LLDL  + G + EA  + K                       
Sbjct: 268 SYLLKA-GMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDL 326

Query: 400 -----------AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
                      A    P+E T+  LL  C +     +G ++  HLLS+K    S   +  
Sbjct: 327 AKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQI--HLLSIKTGFESDMYVSG 384

Query: 449 NVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIF 490
            +    + +  + K R+++ V+E K    ++ +  G   H F
Sbjct: 385 VLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEF 426


>gi|359484341|ref|XP_002280538.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
 gi|297738773|emb|CBI28018.3| unnamed protein product [Vitis vinifera]
          Length = 695

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 235/675 (34%), Positives = 370/675 (54%), Gaps = 74/675 (10%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP----LPNTLIDAYGKCDLVQYAHHLL 61
           Y   L  C R    +  K L      + LH Y P    L N L+  Y K   +  A  L 
Sbjct: 25  YTRLLLQCVRSNDVVQAKRLQTH---MDLHLYQPTDTFLQNRLLHLYAKSGNLSDARDLF 81

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD---------------------- 99
           ++M +RD  SW ++L+AY+++   +   ++F  M   D                      
Sbjct: 82  DKMSRRDVFSWNAMLSAYSKSGNVEDLRAVFDQMSVHDAVSYNTVIAGFSGNGCSSQALE 141

Query: 100 ---KLQPDHF-----VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYA 151
              ++Q + F        S++ AC  L   + GKQ+H   V +   +   V ++L +MYA
Sbjct: 142 FFVRMQEEGFESTDYTHVSVLHACSQLLDIKRGKQIHGRIVATSLGESVFVWNALTNMYA 201

Query: 152 KCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF----------EQAPVRN 201
           KCG  + AR +FD +  KN VSW +M+S Y ++G+ +   ++F          +Q  + N
Sbjct: 202 KCGALDQARWLFDRMVNKNVVSWNSMISGYLQNGQPETCTKLFCEMQSSGLMPDQVTISN 261

Query: 202 LF-------------------------LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
           +                           WT ++ G  Q+  E DA   F EM  E V   
Sbjct: 262 ILSAYFQCGYIDEACKTFREIKEKDKVCWTTMMVGCAQNGKEEDALLLFREMLLENVR-P 320

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           D   +SS+V +CA  A L  G+ +HG  +  G +  L +S+A+VDMY+KC +   A  +F
Sbjct: 321 DNFTISSVVSSCARLASLCQGQAVHGKAVIFGVDHDLLVSSALVDMYSKCGETADAWIVF 380

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
            RM  ++V+SW S+I+G AQ+G+  E LALY+EM+   +KP+ +TFVG++ AC H GLV 
Sbjct: 381 KRMLTRNVISWNSMILGYAQNGKDLEALALYEEMLHENLKPDNITFVGVLSACMHAGLVE 440

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +G+  F S+ + +G+ P+  HY+C+++LL R+G++D+A +LIK+M FEP+   W+ LLS 
Sbjct: 441 RGQGYFYSISKIHGMNPTFDHYSCMINLLGRAGYMDKAVDLIKSMTFEPNCLIWSTLLSV 500

Query: 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEP 476
           C+ + +   G   A HL  L P +   YI+LSN+YA+   W+ V+ VR LM   ++KK  
Sbjct: 501 CRINCDVNNGEMAARHLFELDPHNAGPYIMLSNIYAACGRWKDVAAVRSLMKNNKIKKFA 560

Query: 477 GYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKE 536
            YS+IE     H F A + +H   ++I+E L  L  +++  G+ PDT+ VLHD+ ++EK 
Sbjct: 561 AYSWIEIDNQVHKFVAEDRTHSETEQIYEELNRLIKKLQESGFTPDTNLVLHDVVEEEKF 620

Query: 537 RQLFWHSERLAVAYGLLKSVPG-TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATR 595
             + +HSE+LA+A+ L+K   G T +R++KN+RVCGDCH+ MK +S+I +R I++RD  R
Sbjct: 621 DSICYHSEKLALAFWLIKKPHGRTPIRIMKNIRVCGDCHVFMKFVSKIIRRPIILRDINR 680

Query: 596 YHHFKDGKCSCNDFW 610
           +HHF +G+CSC D W
Sbjct: 681 FHHFIEGRCSCKDSW 695


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 240/623 (38%), Positives = 357/623 (57%), Gaps = 69/623 (11%)

Query: 21  TVKTLHAQIIKLGLHQYGP----LPNTLIDAYGKCD------------LVQYAH------ 58
           T + +HA  +K G   YG     + NTL++ YGKC             +  YA       
Sbjct: 110 TGEQIHAAAVKFG---YGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDD 166

Query: 59  --HLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116
              L E    RD VSW +++++++Q++   + ++ F  M+ L+ ++ D    AS++ AC 
Sbjct: 167 SKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMV-LEGVELDGVTIASVLPACS 225

Query: 117 SLGATRLGKQVHACFVL--SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSW 174
            L    +GK++HA +VL  +   ++  V S+LVDMY  C      R V            
Sbjct: 226 HLERLDVGKEIHA-YVLRNNDLIENSFVGSALVDMYCNC------RQV------------ 266

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
                    SGR+     +F+    R + LW A++SG  ++  +  A   FIEM +    
Sbjct: 267 --------ESGRR-----VFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGL 313

Query: 235 IVDPLVLSSIVGACA-NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
           + +   ++S++ AC  + A +  GK+IH   I     S + + +A+VDMYAKC  +  ++
Sbjct: 314 LPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSR 373

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS-AG----VKPNEVTFVGLIYA 348
            +F  M  K+V++W  +I+    HG+ EE L L+  MV+ AG     KPNEVTF+ +  A
Sbjct: 374 RVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAA 433

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE- 407
           CSH GL+ +G  LF  M  D+G+ P+  HY C++DLL R+G L+EA  L+  MP E D+ 
Sbjct: 434 CSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKV 493

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
             W++LL AC+ H+N E+G   A +LL L+P   S Y+LLSN+Y+SA +W    +VRK M
Sbjct: 494 GAWSSLLGACRIHQNVELGEVAAKNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNM 553

Query: 468 SVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
             M VKKEPG S+IEF    H F AG+ SHP  +++   L  L  +M++ GYVPDTS VL
Sbjct: 554 RQMGVKKEPGCSWIEFRDEVHKFMAGDVSHPQSEQLHGFLETLSEKMRKEGYVPDTSCVL 613

Query: 528 HDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
           H++++ EKE  L  HSE+LA+A+G+L + PGT +RV KNLRVC DCH   K IS+I +RE
Sbjct: 614 HNVDEDEKENLLCGHSEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHAATKFISKIMERE 673

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           I+VRD  R+HHFK+G CSC D+W
Sbjct: 674 IIVRDVRRFHHFKEGTCSCGDYW 696



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 102/385 (26%), Positives = 185/385 (48%), Gaps = 61/385 (15%)

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           P R   SW   L +  ++N  ++ IS +  M  +   +PD+F F +++KA   L   + G
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEM-TVSGARPDNFAFPAVLKAVSGLQDLKTG 111

Query: 125 KQVHACFVLSPFCDDDV-VKSSLVDMYAKCG------LPNNA--------------RAVF 163
           +Q+HA  V   +    V V ++LV+MY KCG        NNA              +A+F
Sbjct: 112 EQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALF 171

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           +S   ++ VSW  M+S++++S R  +A+  F                             
Sbjct: 172 ESFVDRDMVSWNTMISSFSQSDRFSEALAFFRL--------------------------- 204

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG--YESCLFISNAIVD 281
               M  EGV++ D + ++S++ AC++   L++GK+IH  V+      E+  F+ +A+VD
Sbjct: 205 ----MVLEGVEL-DGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENS-FVGSALVD 258

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS-AGVKPNEV 340
           MY  C  + + + +F  +  + +  W ++I G A++G  E+ L L+ EM+  AG+ PN  
Sbjct: 259 MYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTT 318

Query: 341 TFVGLIYACSH-VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           T   ++ AC H +  + KG+++    I +  +   +   + L+D+ ++ G L+ +  +  
Sbjct: 319 TMASVMPACVHSLAAIAKGKEIHAYAIRNM-LASDITVGSALVDMYAKCGCLNLSRRVFN 377

Query: 400 AMPFEPDEPTWAALLSACKHHRNTE 424
            MP   +  TW  L+ AC  H   E
Sbjct: 378 EMP-NKNVITWNVLIMACGMHGKGE 401



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 115/280 (41%), Gaps = 59/280 (21%)

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
           +P R+   W   +    +S +  +A  ++IEM   G    D     +++ A +    L+ 
Sbjct: 52  SPSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGAR-PDNFAFPAVLKAVSGLQDLKT 110

Query: 257 GKQIHGLVIALGYESC---------------------LFISNAIVDMYAKCSDIIAAKDI 295
           G+QIH   +  GY S                       F +NA++ MYAK   +  +K +
Sbjct: 111 GEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKAL 170

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
           F     +D+VSW ++I   +Q  +  E LA +  MV  GV+ + VT   ++ ACSH+  +
Sbjct: 171 FESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSHLERL 230

Query: 356 GKGRKLF------KSMIEDYGITPSLQHYTC-------------------------LLDL 384
             G+++         +IE+  +  +L    C                         ++  
Sbjct: 231 DVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISG 290

Query: 385 LSRSGHLDEAE-----NLIKAMPFEPDEPTWAALLSACKH 419
            +R+G LDE        +IK     P+  T A+++ AC H
Sbjct: 291 YARNG-LDEKALILFIEMIKVAGLLPNTTTMASVMPACVH 329


>gi|224129622|ref|XP_002328762.1| predicted protein [Populus trichocarpa]
 gi|222839060|gb|EEE77411.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 227/598 (37%), Positives = 343/598 (57%), Gaps = 12/598 (2%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKC---DLVQYAHHLLEEMPQRDHVSWASILTA 78
           ++  H+QII+LGL  +  L   LI+   +    D + YA  L + +PQ D   + +I+  
Sbjct: 38  LRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAFLYNTIIKG 97

Query: 79  YNQANL-PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
           +  + L P  +I +  + +  + + P++F F SL+ AC  +   + G Q+HA      F 
Sbjct: 98  FLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIACRKI---QHGMQIHAHLFKFGFG 154

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
              V  +SL+ MY        AR VF +I   +SVSWT+++S Y++ G   +A  IF+  
Sbjct: 155 AHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLM 214

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P +N   W A+++  VQ+    +AF  F  M+ E  +++D  V ++++ AC     L+ G
Sbjct: 215 PQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACTGLGALDQG 274

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVGTA 315
           K IH  +   G E    ++ AIVDMY KC  +  A  +F  +    + + SW  +I G A
Sbjct: 275 KWIHEYIKRNGIELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLA 334

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
            HG  E  + L+ EM    V P+++TF+ L+ AC+H GLV +GR  F  MI  YGI P +
Sbjct: 335 MHGNGEAAIQLFKEMERQRVAPDDITFLNLLTACAHSGLVEEGRNYFSYMIRVYGIEPRM 394

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
           +H+ C++DLL R+G + EA  LI  MP  PD      LL ACK HRN E+G  +   ++ 
Sbjct: 395 EHFGCMVDLLGRAGMVPEARKLIDEMPVSPDVTVLGTLLGACKKHRNIELGEEIGRRVIE 454

Query: 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGET 495
           L+P +   Y+LL+N+YA+A  W+  +KVRKLM    VKK PG+S IE     H F AGE 
Sbjct: 455 LEPNNSGRYVLLANLYANAGKWEDAAKVRKLMDDRGVKKAPGFSMIELQGTVHEFIAGER 514

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDM---EQKEKERQLFWHSERLAVAYGL 552
           +HP   E+   + E+   +K  GYV DT+ VLH     E+++ E  L++HSE+LA+A+GL
Sbjct: 515 NHPQAKELHAKVYEMLEHLKSVGYVADTNGVLHGHDFDEEEDGENPLYYHSEKLAIAFGL 574

Query: 553 LKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            ++ PG  LR++KNLR+C DCH   K+IS +  REI+VRD TR+H FK G+CSC D+W
Sbjct: 575 SRTKPGETLRILKNLRICEDCHHACKLISTVFDREIIVRDRTRFHRFKMGQCSCQDYW 632


>gi|449517557|ref|XP_004165812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/573 (39%), Positives = 339/573 (59%), Gaps = 17/573 (2%)

Query: 42  NTLIDAYGK-CDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDK 100
           NT++  Y K    V+ AH L +++P+ D VS+  +L  Y ++   +  ++ F+ M   D 
Sbjct: 108 NTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVEAALAFFNKMPVKD- 166

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
                   AS              ++    F + P   + V  S+++  Y + G    A 
Sbjct: 167 -------IASWNTLISGFAQNGQMQKAFDLFSVMPE-KNGVSWSAMISGYVEHGDLEAAE 218

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ---SRN 217
            ++ ++ +K+ V  TAML+ Y + G+ + A  IF++  V+NL  W ++++G V+   + +
Sbjct: 219 ELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAED 278

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
            +  F + IE R       +PL LSS++  C+N + L LG+Q+H LV             
Sbjct: 279 GLKVFKTMIESRVRP----NPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACT 334

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           +++ MY KC D+ +A  +F  M RKDV+SW ++I G AQHG   + L L+D+M +  +KP
Sbjct: 335 SLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQHGAGRKALHLFDKMRNGTMKP 394

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           + +TFV +I AC+H G V  G + FKSM +++GI     HYTC++DLL R+G LDEA +L
Sbjct: 395 DWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSL 454

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           IK MPF+P    +  LL AC+ H+N ++    A +LL+L P   + Y+ L+N+YA+   W
Sbjct: 455 IKEMPFKPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKW 514

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
             V+KVRK+M    V K PGYS+IE    +H F + +  HP    I + L ELD +MK  
Sbjct: 515 DQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLA 574

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GYVPD    LHD+E++ KE+ L WHSE+LA+A+GL+K+ PGT +RV KNLRVCGDCH  +
Sbjct: 575 GYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAI 634

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K IS I KREI+VRD TR+HHF++G CSC D+W
Sbjct: 635 KFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/296 (24%), Positives = 140/296 (47%), Gaps = 45/296 (15%)

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYAR-SGRKKDAMEIFE--------------------- 195
           +AR VF+ + ++ +V+W  MLS Y + +G+ K+A E+F+                     
Sbjct: 91  SARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSY 150

Query: 196 ----------QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM-RREGVDIVDPLVLSSI 244
                     + PV+++  W  L+SG  Q+     AF  F  M  + GV        S++
Sbjct: 151 GVEAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVS------WSAM 204

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           +        LE  ++++  V   G +S + +  A++  Y K   +  A+ IF RM  K++
Sbjct: 205 ISGYVEHGDLEAAEELYKNV---GMKSVV-VETAMLTGYMKFGKVELAERIFQRMAVKNL 260

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           V+W S+I G  ++ +AE+ L ++  M+ + V+PN ++   ++  CS++  +  GR++ + 
Sbjct: 261 VTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQ- 319

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           ++    ++      T L+ +  + G LD A  L   MP   D  +W A++S    H
Sbjct: 320 LVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDVISWNAMISGYAQH 374



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 1/104 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  + K  L +      +LI  Y KC  +  A  L  EMP++D +SW ++++ Y Q 
Sbjct: 315 RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVISWNAMISGYAQH 374

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
              +K + +F  M     ++PD   F +++ AC   G   LG Q
Sbjct: 375 GAGRKALHLFDKMRN-GTMKPDWITFVAVILACNHAGFVDLGVQ 417


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/612 (37%), Positives = 365/612 (59%), Gaps = 39/612 (6%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           M  S Y   +++CA  +     + LH+ ++K G H  G +   L DAY KC  +  A ++
Sbjct: 300 MTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNI 359

Query: 61  LE-EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
                  R+ VSW +I++   Q       + +FS M   D++ P+ F +++++KA  S+ 
Sbjct: 360 FSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMRE-DRVMPNEFTYSAMLKASLSI- 417

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
              L  Q+HA           V+K++                 +  I        TA+L+
Sbjct: 418 ---LPPQIHA----------QVIKTN-----------------YQHIPFVG----TALLA 443

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
           +Y++ G  +DA+ IF+    +++  W+A++S   Q+ +   A Y F +M  +G+   +  
Sbjct: 444 SYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIK-PNEF 502

Query: 240 VLSSIVGACA-NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
            +SS++ ACA   A ++ G+Q H + I   Y   + +S+A+V MY++  +I +A+ +F R
Sbjct: 503 TISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFER 562

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
              +D+VSW S+I G AQHG + + +  + +M ++G++ + VTF+ +I  C+H GLV +G
Sbjct: 563 QTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEG 622

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
           ++ F SM+ D+ I P+++HY C++DL SR+G LDE  +LI+ MPF      W  LL AC+
Sbjct: 623 QQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACR 682

Query: 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGY 478
            H+N E+G   A+ LLSL+P D S+Y+LLSN+YA+A  W+   +VRKLM   +VKKE G 
Sbjct: 683 VHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGC 742

Query: 479 SYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQ 538
           S+I+     H F A + SHP+ D+I++ L  +   +K+ GY P+TS VLHD+ + +KE  
Sbjct: 743 SWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAM 802

Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
           L  HSERLA+A+GL+ + PGT L++VKNLRVCGDCH+VMKM+S I  REI++RD +R+HH
Sbjct: 803 LVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHH 862

Query: 599 FKDGKCSCNDFW 610
           F  G CSC DFW
Sbjct: 863 FNGGACSCGDFW 874



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 121/454 (26%), Positives = 215/454 (47%), Gaps = 52/454 (11%)

Query: 23  KTLHAQIIKLGLHQYGPLP--NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           + LH   +K G H  G +    +L+D Y KC  V     + E MP+++ V+W S+LT   
Sbjct: 119 EQLHCLCVKCG-HDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCA 177

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
            A +  + +++F  M A + + P+ F FAS++ A  S GA  LG++VHA  V        
Sbjct: 178 HAQMHSEVMALFFRMRA-EGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSV 236

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V +SL++MYAKCGL  +A++VF+ ++ ++ VSW  +++    +  + +A+++F ++   
Sbjct: 237 FVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHES--- 293

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
                 A +  + QS                          ++++  CAN   L L +Q+
Sbjct: 294 -----RATMGKMTQS------------------------TYATVIKLCANLKQLALARQL 324

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQ 319
           H  V+  G+     +  A+ D Y+KC ++  A +IF      ++VVSWT+II G  Q+G 
Sbjct: 325 HSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGD 384

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY- 378
               + L+  M    V PNE T+  ++ A            +    I    I  + QH  
Sbjct: 385 IPLAVVLFSRMREDRVMPNEFTYSAMLKA---------SLSILPPQIHAQVIKTNYQHIP 435

Query: 379 ---TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
              T LL   S+ G  ++A ++ K M  + D   W+A+LS      + E  T + N  ++
Sbjct: 436 FVGTALLASYSKFGSTEDALSIFK-MIEQKDVVAWSAMLSCHAQAGDCEGATYLFNK-MA 493

Query: 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469
           ++   P+ + + S + A A     V + R+  ++
Sbjct: 494 IQGIKPNEFTISSVIDACACPSAGVDQGRQFHAI 527



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 174/364 (47%), Gaps = 38/364 (10%)

Query: 57  AHHLLEEMPQRDHVSWAS-ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115
           A + L+E+P+RD    A+ +L  Y +  +  + +  FS       L  D    + ++KAC
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVL-VDSATLSCVLKAC 109

Query: 116 GSLGATRLGKQVHACFVLSPFCDDDVVK--SSLVDMYAKCGLPNNARAVFDSIKLKNSVS 173
            S+    LG+Q+H C  +    D   V   +SLVDMY KCG                SV 
Sbjct: 110 RSVPDRVLGEQLH-CLCVKCGHDRGEVSAGTSLVDMYMKCG----------------SVC 152

Query: 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233
                          + +E+FE  P +N+  WT+L++G   ++   +    F  MR EG+
Sbjct: 153 ---------------EGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGI 197

Query: 234 DIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
              +P   +S++ A A+   L+LG+++H   +  G  S +F+ N++++MYAKC  +  AK
Sbjct: 198 -WPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAK 256

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
            +F  M  +D+VSW +++ G   +    E L L+ E  +   K  + T+  +I  C+++ 
Sbjct: 257 SVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLK 316

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
            +   R+L   +++ +G   +    T L D  S+ G L +A N+        +  +W A+
Sbjct: 317 QLALARQLHSCVLK-HGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAI 375

Query: 414 LSAC 417
           +S C
Sbjct: 376 ISGC 379


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/621 (36%), Positives = 356/621 (57%), Gaps = 37/621 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HAQI    L     +   LI +      + YA  +       +   + +++    + + 
Sbjct: 59  IHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSR 118

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            + ++S F  ML L  ++PD      ++K+  +L    LG+ +H   +      D  V+ 
Sbjct: 119 FEGSVSHFVLMLRLS-IRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRV 177

Query: 145 SLVDMYAKCG--------------------------LPNN---------ARAVFDSIKLK 169
           SLVDMY K G                          L N          A ++F+++  +
Sbjct: 178 SLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFEAMPER 237

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
           N+ SW ++++ + R+G    A E+F Q P +N+  WT +++G  Q+ +   A   F  M 
Sbjct: 238 NAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSMFWRML 297

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289
            EGV   D  V+S+++ AC     L++G++IH  + + G++    I  A+VDMYAKC +I
Sbjct: 298 EEGVRPNDLTVVSALL-ACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNI 356

Query: 290 IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349
            +A  +F   + KD+++W+ +I G A HG  ++ L  + +M SAG+ P+EV F+ ++ AC
Sbjct: 357 KSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTAC 416

Query: 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
           SH G V +G   F+SM  DY I P+++HYT ++DLL R+G LDEA + I++MP  PD   
Sbjct: 417 SHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVI 476

Query: 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469
           W AL  AC+ H+N EM    A  LL L+P+ P SY+ LSNVYA+   W+ V +VR LM  
Sbjct: 477 WGALFCACRAHKNIEMAELTAEKLLQLEPKHPGSYVFLSNVYAAVGRWEDVERVRTLMKN 536

Query: 470 MEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHD 529
             V+K+PG+SYIE     H F AG+ +H   +EI   L E+ A  K+ GY+P+T+ VLH+
Sbjct: 537 RGVEKDPGWSYIEVEGQVHSFVAGDHAHVRAEEISLKLEEITASAKQEGYMPETAWVLHN 596

Query: 530 MEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIV 589
           +E++EKE  L  HSE+LA+A+GL+ + PG+ +R+VKNLRVCGDCH +MK  S++++REI+
Sbjct: 597 IEEEEKEDALGSHSEKLALAFGLISTAPGSTIRIVKNLRVCGDCHSMMKYASKLSRREII 656

Query: 590 VRDATRYHHFKDGKCSCNDFW 610
           +RD  R+HHFKDG CSC D+W
Sbjct: 657 LRDIKRFHHFKDGTCSCGDYW 677


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/613 (37%), Positives = 369/613 (60%), Gaps = 41/613 (6%)

Query: 1   MQISHYLHRLRVCAR-HQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHH 59
           M  S Y   +++CA   Q+AL  + LH+ ++K G H  G +   L DAY KC  +  A +
Sbjct: 300 MTQSTYATVIKLCANLKQLALA-RQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALN 358

Query: 60  LLE-EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSL 118
           +       R+ VSW +I++   Q       + +FS M   D++ P+ F +++++KA  S+
Sbjct: 359 IFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMRE-DRVMPNEFTYSAMLKASLSI 417

Query: 119 GATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAML 178
               L  Q+HA           V+K++         +P+                 TA+L
Sbjct: 418 ----LPPQIHA----------QVIKTNYQH------IPSVG---------------TALL 442

Query: 179 SAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238
           ++Y++ G  +DA+ IF+    +++  W+A++S   Q+ +   A Y F +M  +G+   + 
Sbjct: 443 ASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIK-PNE 501

Query: 239 LVLSSIVGACA-NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297
             +SS++ ACA   A ++ G+Q H + I   Y   + +S+A+V MY++  +I +A+ +F 
Sbjct: 502 FTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFE 561

Query: 298 RMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357
           R   +D+VSW S+I G AQHG + + +  + +M ++G++ + VTF+ +I  C+H GLV +
Sbjct: 562 RQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVE 621

Query: 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417
           G++ F SM+ D+ I P+++HY C++DL SR+G LDE  +LI+ MPF      W  LL AC
Sbjct: 622 GQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGAC 681

Query: 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPG 477
           + H+N E+G   A+ LLSL+P D S+Y+LLSN+YA+A  W+   +VRKLM   +VKKE G
Sbjct: 682 RVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAG 741

Query: 478 YSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKER 537
            S+I+     H F A + SHP+ D+I++ L  +   +K+ GY P+TS VLHD+ + +KE 
Sbjct: 742 CSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEA 801

Query: 538 QLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYH 597
            L  HSERLA+A+GL+ + PGT L++VKNLRVCGDCH+VMKM+S I  REI++RD +R+H
Sbjct: 802 MLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFH 861

Query: 598 HFKDGKCSCNDFW 610
           HF  G CSC DFW
Sbjct: 862 HFNGGACSCGDFW 874



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 121/450 (26%), Positives = 219/450 (48%), Gaps = 44/450 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLP--NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           + LH   +K G H  G +    +L+D Y KC  V     + E MP+++ V+W S+LT   
Sbjct: 119 EQLHCLCVKCG-HDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCA 177

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
            A +  + +++F  M A + + P+ F FAS++ A  S GA  LG++VHA  V        
Sbjct: 178 HAQMHSEVMALFFRMRA-EGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSV 236

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V +SL++MYAKCGL  +A++VF+ ++ ++ VSW  +++    +  + +A+++F ++   
Sbjct: 237 FVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHES--- 293

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
                 A +  + QS                          ++++  CAN   L L +Q+
Sbjct: 294 -----RATMGKMTQS------------------------TYATVIKLCANLKQLALARQL 324

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQ 319
           H  V+  G+     +  A+ D Y+KC ++  A +IF      ++VVSWT+II G  Q+G 
Sbjct: 325 HSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGD 384

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
               + L+  M    V PNE T+  ++ A   +       ++ K+   +Y   PS+   T
Sbjct: 385 IPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKT---NYQHIPSVG--T 439

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
            LL   S+ G  ++A ++ K M  + D   W+A+LS      + E  T + N  ++++  
Sbjct: 440 ALLASYSKFGSTEDALSIFK-MIEQKDVVAWSAMLSCHAQAGDCEGATYLFNK-MAIQGI 497

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSV 469
            P+ + + S + A A     V + R+  ++
Sbjct: 498 KPNEFTISSVIDACACPSAGVDQGRQFHAI 527



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 174/364 (47%), Gaps = 38/364 (10%)

Query: 57  AHHLLEEMPQRDHVSWAS-ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115
           A + L+E+P+RD    A+ +L  Y +  +  + +  FS       L  D    + ++KAC
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVL-VDSATLSCVLKAC 109

Query: 116 GSLGATRLGKQVHACFVLSPFCDDDVVK--SSLVDMYAKCGLPNNARAVFDSIKLKNSVS 173
            S+    LG+Q+H C  +    D   V   +SLVDMY KCG                SV 
Sbjct: 110 RSVPDRVLGEQLH-CLCVKCGHDRGEVSAGTSLVDMYMKCG----------------SVC 152

Query: 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233
                          + +E+FE  P +N+  WT+L++G   ++   +    F  MR EG+
Sbjct: 153 ---------------EGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGI 197

Query: 234 DIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
              +P   +S++ A A+   L+LG+++H   +  G  S +F+ N++++MYAKC  +  AK
Sbjct: 198 -WPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAK 256

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
            +F  M  +D+VSW +++ G   +    E L L+ E  +   K  + T+  +I  C+++ 
Sbjct: 257 SVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLK 316

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
            +   R+L   +++ +G   +    T L D  S+ G L +A N+        +  +W A+
Sbjct: 317 QLALARQLHSCVLK-HGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAI 375

Query: 414 LSAC 417
           +S C
Sbjct: 376 ISGC 379


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/608 (37%), Positives = 358/608 (58%), Gaps = 12/608 (1%)

Query: 10  LRVCARHQIALT-VKTLHAQIIKLGLHQYGPLPNTL---IDAYGKCDLVQYAHHLLEEMP 65
           +R+   H   L   K LHA I +  LHQ   +   L   I       +  Y H L  ++ 
Sbjct: 14  VRIIESHCTTLNHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVH 73

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
             +   +++++ AY +      +I ++++ML  + + P  F F++L      L    LG 
Sbjct: 74  SPNPFLYSALIRAYARNGPFHHSIRLYTSMLN-NNVSPVSFTFSALFSL---LKNPSLGS 129

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q+H    L  F +D  V ++++ MY K G+ + AR VFD +  ++ V+WT ++ AYARSG
Sbjct: 130 QLHLHAFLFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSG 189

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
               A E+F   PV+++  WT++V+G  Q+     A   F +MR  GV + D + L   +
Sbjct: 190 DMDSACELFVGLPVKDMVAWTSMVTGYSQNAMPKKALQFFRKMREAGV-VTDEITLVGAI 248

Query: 246 GACANFAVLELGKQIHGLVIA--LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
            ACA   V      I  +  +   G  S +F+ +A++DMY+KC ++  A ++F  M+  +
Sbjct: 249 SACAQLGVSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMN 308

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           V S++S+IVG A HG+A   + L+ EM+  G+KPN VTFVGL  ACSH G+V +G++LF 
Sbjct: 309 VFSYSSMIVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFG 368

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
           +M E YG++P+  HY C+ DLL R+GHL++A  L++ MP EP+   W ALL A   H N 
Sbjct: 369 AMKECYGVSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNP 428

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           ++    +  L  L+P++  +Y+LLS  YA AA W  VS+VRKLM   +++K PG S++E 
Sbjct: 429 DVAEIASRSLFELEPDNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEA 488

Query: 484 GKG-SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWH 542
             G  H F+AG+  HP  +EI + L +L   +K  GY P  +SV +D++ + K   L  H
Sbjct: 489 KNGIIHEFFAGDVKHPEINEIKKALDDLLQRLKCTGYQPKLNSVPYDIDDEGKRCLLVSH 548

Query: 543 SERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           SE+LA+AYGLL +  G+ ++++KNLR+C DCHIVM   S++T R+I+VRD  R+HHF +G
Sbjct: 549 SEKLALAYGLLSTDAGSTIKIMKNLRICEDCHIVMCGASKLTGRKIIVRDNMRFHHFLNG 608

Query: 603 KCSCNDFW 610
            CSCN+FW
Sbjct: 609 ACSCNNFW 616


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/551 (38%), Positives = 329/551 (59%), Gaps = 33/551 (5%)

Query: 60  LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
           + E MP++D VSW +I+    +  L ++T+ +   M   + L+PD F  +S++       
Sbjct: 195 IFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGAN-LKPDSFTLSSVLPLIAENV 253

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
               GK++H C +      D  V SSL+DMYAKC    ++  VF  +  ++ +SW ++++
Sbjct: 254 DISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIA 313

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
              ++G   + +  F Q           ++   ++ ++     YSF              
Sbjct: 314 GCVQNGLFDEGLRFFRQ-----------MLMAKIKPKS-----YSF-------------- 343

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
             SSI+ ACA+   L LGKQ+HG +   G++  +FI++++VDMYAKC +I  AK IF RM
Sbjct: 344 --SSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRM 401

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
           R +D+VSWT++I+G A HGQA + + L+++M + G+KPN V F+ ++ ACSH GLV +  
Sbjct: 402 RLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAW 461

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           K F SM  D+GI P ++HY  + DLL R+G L+EA + I  M   P    WA LLSAC+ 
Sbjct: 462 KYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRV 521

Query: 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
           H N +M  +VAN +L + P +  +YILL+N+Y++A  W+  +K R  M  + ++K P  S
Sbjct: 522 HXNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACS 581

Query: 480 YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL 539
           +IE     + F AG+ SHP  ++I E +  L   M++ GYVPDTS V HD+E+++K+  +
Sbjct: 582 WIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLV 641

Query: 540 FWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
             HSERLA+ +G++ +  G  +RV KNLRVC DCH   K IS+I  REIVVRD +R+HHF
Sbjct: 642 CSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHF 701

Query: 600 KDGKCSCNDFW 610
           K+G CSC D+W
Sbjct: 702 KNGTCSCGDYW 712



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 202/409 (49%), Gaps = 26/409 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHAQ++K          + L+  Y   +L+  +  L   +     ++W S++  Y   
Sbjct: 26  QQLHAQVLKFQASSL-CNLSLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSH 84

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            LP +++  F  MLA   L PDH VF S++K+C  L    LG+ +H   +      D   
Sbjct: 85  GLPHQSLGSFIGMLA-SGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYT 143

Query: 143 KSSLVDMYAKCGLPN-------NARAVFDSIKLKN-SVSWTAMLSAYARSGRKKDAMEIF 194
            ++L++MY+K             A  VFD +  +  SV   ++LS       +    +IF
Sbjct: 144 GNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLS-------EDSVRKIF 196

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE--GVDI-VDPLVLSSIVGACANF 251
           E  P ++L  W  +++G   +RN +  +   + M RE  G ++  D   LSS++   A  
Sbjct: 197 EMMPEKDLVSWNTIIAG--NARNGL--YEETLRMIREMGGANLKPDSFTLSSVLPLIAEN 252

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
             +  GK+IHG  I  G ++ ++++++++DMYAKC+ +  +  +F  +  +D +SW SII
Sbjct: 253 VDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSII 312

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G  Q+G  +E L  + +M+ A +KP   +F  ++ AC+H+  +  G++L    I   G 
Sbjct: 313 AGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQL-HGYITRNGF 371

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
             ++   + L+D+ ++ G++  A+ +   M    D  +W A++  C  H
Sbjct: 372 DENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALH 419



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 100/174 (57%), Gaps = 1/174 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   I+ GL     + ++LID Y KC  V  +  +   + +RD +SW SI+    Q 
Sbjct: 259 KEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQN 318

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            L  + +  F  ML + K++P  + F+S++ AC  L    LGKQ+H     + F ++  +
Sbjct: 319 GLFDEGLRFFRQML-MAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFI 377

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
            SSLVDMYAKCG    A+ +FD ++L++ VSWTAM+   A  G+  DA+E+FEQ
Sbjct: 378 ASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQ 431



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 1/97 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LH  I + G  +   + ++L+D Y KC  ++ A  + + M  RD VSW +++      
Sbjct: 360 KQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALH 419

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
                 I +F  M   + ++P+H  F +++ AC   G
Sbjct: 420 GQAPDAIELFEQM-ETEGIKPNHVAFMAVLTACSHGG 455


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/594 (37%), Positives = 336/594 (56%), Gaps = 39/594 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H   +K G      + N++ID Y KC  +  A  + E MP R+ +SW +++  Y  A
Sbjct: 93  RQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVA 152

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF--CDDD 140
              +K + +F  M  +     D F F S +KAC  LGA + G Q+HA  +   F    + 
Sbjct: 153 GFCEKALVLFQKMQEVGGF-LDEFTFTSTLKACSDLGAIKEGNQIHAFLITGGFLYSVNT 211

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V  +L+D+Y KCG    AR VF  I+ K+ +SWTA++  YA+ G   ++ME+F Q    
Sbjct: 212 AVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQL--- 268

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
                                        RE    VD  +LSS++G  A+FA+++ GKQ+
Sbjct: 269 -----------------------------RESSIQVDGFILSSMMGVFADFALVQQGKQM 299

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H   I +     + + N+I+DMY KC  I  A+ +F  M  ++V+SWT +I G  +HG  
Sbjct: 300 HAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLG 359

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           +E + L+DEM     +P++VT++ ++  CSH GLV KG++ F  +   +GI   ++HY C
Sbjct: 360 KEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHYAC 419

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DLL R+G L EA+NL+ +MP E +   W  LLSAC+ H + E+G  V   LL L  E+
Sbjct: 420 MVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDSEN 479

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
           P +Y+++SN+YA A  W+   ++R+L+   ++KKE G S++E  K  H FY G+ +HPL 
Sbjct: 480 PVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDKEVHFFYGGDDTHPLT 539

Query: 501 DEIFELLTELDAEMKRR-GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLL---KSV 556
           ++I E+L E++  MK   GYV      LHD+E++ K   L  HSE+LA+   L+      
Sbjct: 540 EKIHEILKEMERRMKEELGYVYGVKYALHDVEEESKMDNLRVHSEKLAIGLALVCGGLEE 599

Query: 557 PGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
              V+RV KNLRVCGDCH  +K +S+I +   VVRDA R+H F+DG CSC D+W
Sbjct: 600 GRKVIRVFKNLRVCGDCHEFIKGLSKILRVVFVVRDANRFHRFEDGLCSCRDYW 653



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 124/241 (51%), Gaps = 7/241 (2%)

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
           ++  Y + GR   A ++F++   RN+  WTAL+ G +Q+ N +++   F +M   GV   
Sbjct: 13  LIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGVKPN 72

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           D    S+ + AC     L++G+QIH + +  G++    + N+I+DMY+KC  I  A  +F
Sbjct: 73  D-FTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMF 131

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
             M  ++++SW ++I G    G  E+ L L+ +M   G   +E TF   + ACS +G + 
Sbjct: 132 EVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGAIK 191

Query: 357 KGRKLFKSMIED---YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
           +G ++   +I     Y +  ++     L+DL  + G L  A  +   +  E    +W AL
Sbjct: 192 EGNQIHAFLITGGFLYSVNTAVA--GALIDLYVKCGKLFMARRVFSHIE-EKHVISWTAL 248

Query: 414 L 414
           +
Sbjct: 249 I 249



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 85/150 (56%), Gaps = 2/150 (1%)

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
           +G+   L +SN ++ MY KC  +  A D+F RM +++VVSWT+++ G  Q+G   E+L L
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
           + +M  +GVKPN+ TF   + AC  +  +  GR++    ++  G          ++D+ S
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKT-GFDMVNVVGNSIIDMYS 119

Query: 387 RSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           + G ++EA  + + MP   +  +W A+++ 
Sbjct: 120 KCGRINEAACMFEVMPVR-NLISWNAMIAG 148


>gi|147775281|emb|CAN61593.1| hypothetical protein VITISV_030555 [Vitis vinifera]
          Length = 673

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/628 (36%), Positives = 354/628 (56%), Gaps = 44/628 (7%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQY-----AHHLLEEMPQRDHVSWASIL 76
           +K  HA I++ G  Q   +  +L+ +Y      +Y     +  + + + + +   W  ++
Sbjct: 51  LKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMI 110

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
               + N P K I ++  M+     +P+ + + +++KAC   G    G QVHA  V    
Sbjct: 111 KVCIENNEPFKAILLYYEMVVAHS-RPNKYTYPAVLKACSDSGVVAEGVQVHAHLVKHGL 169

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKKDAMEIFE 195
             D  + SS + MYA  G    AR + D    + ++V W AM+  Y R G  + A E+FE
Sbjct: 170 GGDGHILSSAIRMYASFGRLVEARRILDDKGGEVDAVCWNAMIDGYLRFGEVEAARELFE 229

Query: 196 QAPVRNLF-LWTALVSGL---------------VQSRNEI----------------DAFY 223
             P R++   W A++SG                ++ R+EI                +A  
Sbjct: 230 GMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDEISWSAMIDGYIQEGCFMEALE 289

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            F +M++E +      VL S++ ACAN   L+ G+ IH        +    +  ++VDMY
Sbjct: 290 IFHQMQKEKIR-PRKFVLPSVLSACANLGALDQGRWIHTYAKRNSIQLDGVLGTSLVDMY 348

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           AKC  I  A ++F +M  K+V SW ++I G A HG+AE+ + L+ +M    + PNE+TFV
Sbjct: 349 AKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKM---DIYPNEITFV 405

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
           G++ AC+H GLV KG  +F SM ++YG+ P ++HY C++DLL R+G L EAE ++ ++P 
Sbjct: 406 GVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIEHYGCIVDLLGRAGLLTEAEKVVSSIPT 465

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
           EP    W ALL AC+ H N E+G RV   LL L+P++   Y LLSN+YA A  W+ V +V
Sbjct: 466 EPTPAVWGALLGACRKHGNVELGERVGKILLELEPQNSGRYTLLSNIYAKAGRWEEVGEV 525

Query: 464 RKLMSVMEVKKEPGYSYIEFGKGS-HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPD 522
           RKLM    +K  PG S I+ G+G  H F  G+ SHP   +I+++L ++   ++  GY PD
Sbjct: 526 RKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHPQVKDIYQMLDKVKERLQMEGYEPD 585

Query: 523 TSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISR 582
            S VL D++++EKE  ++ HSE+LA+ +GL+ + PGT +R+VKNLRVC DCH   K+IS+
Sbjct: 586 PSQVLFDIDEEEKETAVWQHSEKLAIGFGLINTSPGTTIRIVKNLRVCEDCHSATKLISQ 645

Query: 583 ITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +  REI+VRD  RYHHF++G CSC DFW
Sbjct: 646 VYNREIIVRDRIRYHHFRNGACSCKDFW 673


>gi|224123200|ref|XP_002330363.1| predicted protein [Populus trichocarpa]
 gi|222871567|gb|EEF08698.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 228/609 (37%), Positives = 347/609 (56%), Gaps = 38/609 (6%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           H + +L+ C     A++    HA + K GL       N L+++Y +   +QYAHHL +EM
Sbjct: 11  HIIQQLKNCKDFIFAIST---HANLFKFGLLNDTITTNHLLNSYLRFRRIQYAHHLFDEM 67

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
            + + VSW S+++ Y     PQ  + +++ M +  ++ P+ F  A+++ +C  L   + G
Sbjct: 68  HEPNVVSWTSLMSGYVNMGRPQSALWLYTKM-SESEVSPNGFTLATVINSCSILADLKTG 126

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           K VHA   +     + VV SSLVDMY KC   + AR VFDS+                  
Sbjct: 127 KMVHAHVQILGLQGNLVVCSSLVDMYGKCNDVDGARMVFDSM------------------ 168

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
                          RN+  WTA+++G  Q+    +A   F E     ++  +  +L+S+
Sbjct: 169 -------------SCRNVVSWTAMIAGYAQNGKGYEALEVFREFSSYMMERPNHFMLASV 215

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + ACA+   L  GK  HG VI  GYE    +++A+VDMYAKC   + ++ +F R+R   V
Sbjct: 216 INACASLGRLVSGKVTHGAVIRGGYELNDVVASALVDMYAKCGSFLYSEKVFRRIRNPSV 275

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           + +TS+IVG A++G  + +L L++EM    V PN+VTFVG+++ACSH GLV +G +L  S
Sbjct: 276 IPYTSMIVGAAKYGLGKLSLNLFEEMTDRKVMPNDVTFVGILHACSHSGLVDEGLRLLNS 335

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT--WAALLSACKHHRN 422
           M E +G+ P ++HYTC++D+LSR G LDEA  L K++   P+E    W  LLS+ + H  
Sbjct: 336 MHEKHGVMPDVRHYTCVVDMLSRVGRLDEAYKLAKSIRVNPNEGALLWGTLLSSSRLHGR 395

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
            +M    +  L+    +   +Y+ LSN Y  A  W++   +R  M ++ V KEPG S+IE
Sbjct: 396 VDMAVEASKWLIEYNQQVAGAYVTLSNTYTLAGEWENAHSLRTEMELVGVHKEPGCSWIE 455

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSS-VLHDMEQKEKERQLFW 541
                ++FYAG+ S    DE+  LL EL+  M  RG V  ++  V  D+EQ+ KE+ +  
Sbjct: 456 IKDSIYVFYAGDLSCERGDEVISLLRELERRMMERGCVGGSTGLVFVDVEQEVKEKIVGL 515

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSERLA+A+GL+    G  +RV+KNLR+C DCH   K+IS+I +R+ VVRD  R+HHFKD
Sbjct: 516 HSERLALAFGLISIPKGVTIRVMKNLRICSDCHEAFKLISKIVERDFVVRDVNRFHHFKD 575

Query: 602 GKCSCNDFW 610
           G C+C DFW
Sbjct: 576 GSCTCKDFW 584


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/592 (38%), Positives = 349/592 (58%), Gaps = 4/592 (0%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLID--AYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           +K +H Q++  GL     L    +   A    + + Y++ +L+        ++ S++ A+
Sbjct: 25  LKQIHTQLLINGLLNDPQLVGQFVASIALNNPNNLHYSNQVLDNSQNPTLFTFNSMIRAH 84

Query: 80  NQANLPQKTISIFSTML-ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
           ++++ P ++   +S +L +   L PD++ F  LV+    L A   G  VH   V   F  
Sbjct: 85  SKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLVRTSAQLLAHGTGSSVHGAAVKYGFEY 144

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  V+S L+ MYA+ G  +    VF SI   + V  TAM+SA A+ G    A ++F++  
Sbjct: 145 DPHVQSGLIYMYAELGGLDACHRVFSSICEPDLVCQTAMVSACAKMGDVGFARKLFDKMS 204

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            ++   W A++SG VQ     +A   F  M+REGV  V+ + + S++ AC++   L+ G+
Sbjct: 205 HKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVK-VNEVSMVSVLSACSHLGALDQGR 263

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
             H  +        L +  A++DMYAKC ++  A ++F  M+ K+V +W+S I G A +G
Sbjct: 264 WAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWGMKEKNVYTWSSAIGGLAMNG 323

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
             E+ L L+  M    V+PNE+TFV ++  CS VGLV +GRK F+SM + YGI P L+HY
Sbjct: 324 AGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEGRKHFESMSKVYGIEPRLEHY 383

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
            C++DL  R+GHLDEA N I +MP  P    W ALL+ACK +RN EMG   +  ++ L+ 
Sbjct: 384 GCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALLNACKIYRNMEMGELASRKIVELEA 443

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
           ++  +Y+LLSN+YA +  W  VS VR+ M+V  V+K+PG S IE G   H F+ G+ SHP
Sbjct: 444 KNHGAYVLLSNIYADSKDWDRVSNVRQTMNVKGVRKQPGCSVIEVGGEVHEFFVGDKSHP 503

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
              EI  +L E+   +K  GYV +T+ V  D+E++EKE  L  HSE++A+A+GL+   P 
Sbjct: 504 RYAEIQVMLGEISRRLKLSGYVANTNPVFFDIEEEEKEDALCMHSEKIAIAFGLISLSPD 563

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             +R+VKNLRVC DCH   KMIS+   REIVVRD  R+HHF+DG+CSC  +W
Sbjct: 564 VPIRIVKNLRVCWDCHDATKMISKAFNREIVVRDRNRFHHFRDGECSCKGYW 615


>gi|15223802|ref|NP_173449.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806503|sp|Q9LNU6.2|PPR53_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20230
 gi|332191832|gb|AEE29953.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 760

 Score =  432 bits (1111), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/577 (36%), Positives = 343/577 (59%), Gaps = 10/577 (1%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMP----QRDHVSWASILTAYNQANLPQKTISIFSTMLA 97
           + L+ AY +   ++    +L EM     + + VSW  IL+ +N++   ++ + +F  +  
Sbjct: 186 SALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQKIHH 245

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
           L    PD    +S++ + G      +G+ +H   +      D  V S+++DMY K G   
Sbjct: 246 LG-FCPDQVTVSSVLPSVGDSEMLNMGRLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVY 304

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE----QAPVRNLFLWTALVSGLV 213
              ++F+  ++  +    A ++  +R+G    A+E+FE    Q    N+  WT++++G  
Sbjct: 305 GIISLFNQFEMMEAGVCNAYITGLSRNGLVDKALEMFELFKEQTMELNVVSWTSIIAGCA 364

Query: 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
           Q+  +I+A   F EM+  GV   + + + S++ AC N A L  G+  HG  + +     +
Sbjct: 365 QNGKDIEALELFREMQVAGVK-PNHVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDNV 423

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
            + +A++DMYAKC  I  ++ +F  M  K++V W S++ G + HG+A+E +++++ ++  
Sbjct: 424 HVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMHGKAKEVMSIFESLMRT 483

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
            +KP+ ++F  L+ AC  VGL  +G K FK M E+YGI P L+HY+C+++LL R+G L E
Sbjct: 484 RLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLEHYSCMVNLLGRAGKLQE 543

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453
           A +LIK MPFEPD   W ALL++C+   N ++    A  L  L+PE+P +Y+LLSN+YA+
Sbjct: 544 AYDLIKEMPFEPDSCVWGALLNSCRLQNNVDLAEIAAEKLFHLEPENPGTYVLLSNIYAA 603

Query: 454 AAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAE 513
             MW  V  +R  M  + +KK PG S+I+     +   AG+ SHP  D+I E + E+  E
Sbjct: 604 KGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNRVYTLLAGDKSHPQIDQITEKMDEISKE 663

Query: 514 MKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDC 573
           M++ G+ P+    LHD+E++E+E+ L+ HSE+LAV +GLL +  GT L+V+KNLR+CGDC
Sbjct: 664 MRKSGHRPNLDFALHDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDC 723

Query: 574 HIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           H V+K IS    REI +RD  R+HHFKDG CSC DFW
Sbjct: 724 HAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 128/464 (27%), Positives = 219/464 (47%), Gaps = 45/464 (9%)

Query: 26  HAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLP 85
           HA+I+K G    G +   LI +Y   +    A  +L+ +P     S++S++ A  +A L 
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSIPDPTIYSFSSLIYALTKAKLF 97

Query: 86  QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS 145
            ++I +FS M +   L PD  V  +L K C  L A ++GKQ+H    +S    D  V+ S
Sbjct: 98  TQSIGVFSRMFS-HGLIPDSHVLPNLFKVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGS 156

Query: 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR----N 201
           +  MY +CG   +AR VFD +  K+ V+ +A+L AYAR G  ++ + I  +        N
Sbjct: 157 MFHMYMRCGRMGDARKVFDRMSDKDVVTCSALLCAYARKGCLEEVVRILSEMESSGIEAN 216

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           +  W  ++SG  +S    +A   F ++   G    D + +SS++ +  +  +L +G+ IH
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVVMFQKIHHLGF-CPDQVTVSSVLPSVGDSEMLNMGRLIH 275

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR--------------------- 300
           G VI  G      + +A++DMY K   +     +F +                       
Sbjct: 276 GYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRNGLVD 335

Query: 301 --------------RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
                           +VVSWTSII G AQ+G+  E L L+ EM  AGVKPN VT   ++
Sbjct: 336 KALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNHVTIPSML 395

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            AC ++  +G GR      +  + +  ++   + L+D+ ++ G ++ ++ +   MP + +
Sbjct: 396 PACGNIAALGHGRSTHGFAVRVH-LLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTK-N 453

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLL--SLKPEDPSSYILLS 448
              W +L++    H   +    +   L+   LKP+  S   LLS
Sbjct: 454 LVCWNSLMNGFSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLS 497



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 97/208 (46%), Gaps = 36/208 (17%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGK---------------------CD--------- 52
           + +H  +IK GL +   + + +ID YGK                     C+         
Sbjct: 272 RLIHGYVIKQGLLKDKCVISAMIDMYGKSGHVYGIISLFNQFEMMEAGVCNAYITGLSRN 331

Query: 53  -LVQYAHHLLEEMPQR----DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV 107
            LV  A  + E   ++    + VSW SI+    Q     + + +F  M  +  ++P+H  
Sbjct: 332 GLVDKALEMFELFKEQTMELNVVSWTSIIAGCAQNGKDIEALELFREM-QVAGVKPNHVT 390

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
             S++ ACG++ A   G+  H   V     D+  V S+L+DMYAKCG  N ++ VF+ + 
Sbjct: 391 IPSMLPACGNIAALGHGRSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMP 450

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFE 195
            KN V W ++++ ++  G+ K+ M IFE
Sbjct: 451 TKNLVCWNSLMNGFSMHGKAKEVMSIFE 478



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 58/248 (23%), Positives = 109/248 (43%), Gaps = 33/248 (13%)

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q HA  + S   +D  + + L+  Y+     N+A  V  SI                   
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLVLQSI------------------- 76

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
                       P   ++ +++L+  L +++    +   F  M   G+ I D  VL ++ 
Sbjct: 77  ------------PDPTIYSFSSLIYALTKAKLFTQSIGVFSRMFSHGL-IPDSHVLPNLF 123

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
             CA  +  ++GKQIH +    G +   F+  ++  MY +C  +  A+ +F RM  KDVV
Sbjct: 124 KVCAELSAFKVGKQIHCVSCVSGLDMDAFVQGSMFHMYMRCGRMGDARKVFDRMSDKDVV 183

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           + ++++   A+ G  EE + +  EM S+G++ N V++ G++   +  G   +   +F+  
Sbjct: 184 TCSALLCAYARKGCLEEVVRILSEMESSGIEANIVSWNGILSGFNRSGYHKEAVVMFQK- 242

Query: 366 IEDYGITP 373
           I   G  P
Sbjct: 243 IHHLGFCP 250



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 79/163 (48%), Gaps = 9/163 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           ++ H   +++ L     + + LID Y KC  +  +  +   MP ++ V W S++  ++  
Sbjct: 408 RSTHGFAVRVHLLDNVHVGSALIDMYAKCGRINLSQIVFNMMPTKNLVCWNSLMNGFSMH 467

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----KQVHACFVLSPFCD 138
              ++ +SIF +++   +L+PD   F SL+ ACG +G T  G    K +   + + P  +
Sbjct: 468 GKAKEVMSIFESLMR-TRLKPDFISFTSLLSACGQVGLTDEGWKYFKMMSEEYGIKPRLE 526

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
                S +V++  + G    A  +   +  + +S  W A+L++
Sbjct: 527 H---YSCMVNLLGRAGKLQEAYDLIKEMPFEPDSCVWGALLNS 566


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/571 (37%), Positives = 338/571 (59%), Gaps = 38/571 (6%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L N LI+ Y K +L+  AH L ++MPQR+ +SW ++++AY++  + QK + +   ML  D
Sbjct: 98  LVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR-D 156

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            ++P+ + ++S++++C  +   R+   +H   +      D  V+S+L+D++AK G P   
Sbjct: 157 NVRPNVYTYSSVLRSCNGMSDVRM---LHCGIIKEGLESDVFVRSALIDVFAKLGEP--- 210

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
                                       +DA+ +F++    +  +W +++ G  Q+    
Sbjct: 211 ----------------------------EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSD 242

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
            A   F  M+R G  I +   L+S++ AC   A+LELG Q H  V  + Y+  L ++NA+
Sbjct: 243 VALELFKRMKRAGF-IAEQATLTSVLRACTGLALLELGMQAH--VHIVKYDQDLILNNAL 299

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           VDMY KC  +  A  +F +M+ +DV++W+++I G AQ+G ++E L L++ M S+G KPN 
Sbjct: 300 VDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNY 359

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           +T VG+++ACSH GL+  G   F+SM + YGI P  +HY C++DLL ++G LD+A  L+ 
Sbjct: 360 ITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLN 419

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
            M  EPD  TW  LL AC+  RN  +    A  +++L PED  +Y LLSN+YA++  W  
Sbjct: 420 EMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDS 479

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
           V ++R  M    +KKEPG S+IE  K  H F  G+ SHP   E+ + L +L   +   GY
Sbjct: 480 VEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGY 539

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
           VP+T+ VL D+E ++ E  L  HSE+LA+A+GL+      V+R+ KNLR+CGDCH+  K+
Sbjct: 540 VPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKL 599

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            S++  R IV+R   RYHHF+DGKCSC D+W
Sbjct: 600 ASKLEIRSIVIRGPIRYHHFQDGKCSCGDYW 630



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/175 (29%), Positives = 92/175 (52%), Gaps = 3/175 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           V+ LH  IIK GL     + + LID + K    + A  + +EM   D + W SI+  + Q
Sbjct: 178 VRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQ 237

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
            +     + +F  M     +  +     S+++AC  L    LG Q H   V   +  D +
Sbjct: 238 NSRSDVALELFKRMKRAGFI-AEQATLTSVLRACTGLALLELGMQAHVHIV--KYDQDLI 294

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           + ++LVDMY KCG   +A  VF+ +K ++ ++W+ M+S  A++G  ++A+++FE+
Sbjct: 295 LNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFER 349



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/190 (20%), Positives = 93/190 (48%), Gaps = 5/190 (2%)

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           D    S ++  C +   +  G  I   +   G+   +F+ N +++MY K + +  A  +F
Sbjct: 60  DSATYSELIKCCISNRAVHEGNLICRHLYFNGHRPMMFLVNVLINMYVKFNLLNDAHQLF 119

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
            +M +++V+SWT++I   ++    ++ L L   M+   V+PN  T+  ++ +C+ +  V 
Sbjct: 120 DQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRSCNGMSDV- 178

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             R L   +I++ G+   +   + L+D+ ++ G  ++A ++   M    D   W +++  
Sbjct: 179 --RMLHCGIIKE-GLESDVFVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGG 234

Query: 417 CKHHRNTEMG 426
              +  +++ 
Sbjct: 235 FAQNSRSDVA 244



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 82/176 (46%), Gaps = 11/176 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C    +AL    + A +  +   Q   L N L+D Y KC  ++ A  +  +M +RD 
Sbjct: 267 LRACT--GLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDALRVFNQMKERDV 324

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
           ++W+++++   Q    Q+ + +F  M +    +P++     ++ AC   G    G    +
Sbjct: 325 ITWSTMISGLAQNGYSQEALKLFERMKS-SGTKPNYITIVGVLFACSHAGLLEDGWYYFR 383

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
            +   + + P  +       ++D+  K G  ++A  + + ++ + ++V+W  +L A
Sbjct: 384 SMKKLYGIDPVREH---YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 436


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/596 (37%), Positives = 349/596 (58%), Gaps = 10/596 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQ--YAHHLLEEMPQRDHVSWASILTAY 79
           +K +H  +++ GL Q   +   LI    K  +    YA  ++E +  R+   W +++  Y
Sbjct: 65  IKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVIEPVQFRNPFLWTAVIRGY 124

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA-CFVLSPFCD 138
                  + I+++  M   +++ P  F F++L+KACG++    LG+Q HA  F L  FC 
Sbjct: 125 AIEGKFDEAIAMYGCMRK-EEITPVSFTFSALLKACGTMKDLNLGRQFHAQTFRLRGFCF 183

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
              V ++++DMY KC   + AR VFD +  ++ +SWT +++AYAR G  + A E+FE  P
Sbjct: 184 V-YVGNTMIDMYVKCESIDCARKVFDEMPERDVISWTELIAAYARVGNMECAAELFESLP 242

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            +++  WTA+V+G  Q+    +A   F  M + G+   D + ++  + ACA     +   
Sbjct: 243 TKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKSGIR-ADEVTVAGYISACAQLGASKYAD 301

Query: 259 QIHGLVIALGYESC--LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           +   +    GY     + I +A++DMY+KC ++  A ++F  M  K+V +++S+I+G A 
Sbjct: 302 RAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEAVNVFMSMNNKNVFTYSSMILGLAT 361

Query: 317 HGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
           HG+A+E L L+  MV+   +KPN VTFVG + ACSH GLV +GR++F SM + +G+ P+ 
Sbjct: 362 HGRAQEALHLFHYMVTQTEIKPNTVTFVGALMACSHSGLVDQGRQVFDSMYQTFGVQPTR 421

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
            HYTC++DLL R+G L EA  LIK M  EP    W ALL AC+ H N E+    A HL  
Sbjct: 422 DHYTCMVDLLGRTGRLQEALELIKTMSVEPHGGVWGALLGACRIHNNPEIAEIAAEHLFE 481

Query: 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS-HIFYAGE 494
           L+P+   +YILLSNVYASA  W  V +VRKL+    +KK P  S++    G  H F+ G 
Sbjct: 482 LEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGN 541

Query: 495 TSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLK 554
            +HP+ ++I + L EL   +   GY PD SSV +D+    K   L  H+E+LA+A+ LL 
Sbjct: 542 LNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLT 601

Query: 555 SVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +   + + ++KNLR+C DCH  M++ S +T + I++RD  R+HHF+ G CSC DFW
Sbjct: 602 TNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGDFW 657



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 115/257 (44%), Gaps = 43/257 (16%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C   +     +  HAQ  +L    +  + NT+ID Y KC+ +  A  + +EMP+RD 
Sbjct: 156 LKACGTMKDLNLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDEMPERDV 215

Query: 70  VSWASILTAYNQA-----------NLPQKTISIFSTMLA--------------LDKLQ-- 102
           +SW  ++ AY +            +LP K +  ++ M+                D+++  
Sbjct: 216 ISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAKPQEALEYFDRMEKS 275

Query: 103 ---PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD--VVKSSLVDMYAKCGLPN 157
               D    A  + AC  LGA++   +       S +   D  V+ S+L+DMY+KCG   
Sbjct: 276 GIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVE 335

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF-------EQAPVRNLFLWTALV- 209
            A  VF S+  KN  ++++M+   A  GR ++A+ +F       E  P    F+   +  
Sbjct: 336 EAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTFVGALMAC 395

Query: 210 --SGLV-QSRNEIDAFY 223
             SGLV Q R   D+ Y
Sbjct: 396 SHSGLVDQGRQVFDSMY 412



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 7/222 (3%)

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA--AKDIF 296
           L++SS++    +   L   KQIHG V+  G +   +I   ++    K    +   A+ + 
Sbjct: 47  LLVSSLISKLDDCINLNQIKQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYARRVI 106

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
             ++ ++   WT++I G A  G+ +E +A+Y  M    + P   TF  L+ AC  +  + 
Sbjct: 107 EPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKACGTMKDLN 166

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            GR+         G        T ++D+  +   +D A  +   MP E D  +W  L++A
Sbjct: 167 LGRQFHAQTFRLRGFCFVYVGNT-MIDMYVKCESIDCARKVFDEMP-ERDVISWTELIAA 224

Query: 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
                N E     A    SL  +D  ++  +   +A  A  Q
Sbjct: 225 YARVGNMECA---AELFESLPTKDMVAWTAMVTGFAQNAKPQ 263


>gi|449453744|ref|XP_004144616.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449511814|ref|XP_004164061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 681

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/651 (35%), Positives = 358/651 (54%), Gaps = 68/651 (10%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYG--KCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           LHA  IK     +  + + L+  Y   + + +QYAH L + + +   VSW  ++  Y + 
Sbjct: 34  LHALSIKTASLNHPSVSSRLLALYADPRINNLQYAHSLFDWIQEPTLVSWNLLIKCYIEN 93

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC----------FV 132
                 I++F  +L      PD F    ++K C  LGA + GKQ+H            FV
Sbjct: 94  QRSNDAIALFCKLLC--DFVPDSFTLPCVLKGCARLGALQEGKQIHGLVLKIGFGVDKFV 151

Query: 133 LSPFC--------------------DDDVVK-SSLVDMYAKCG-----------LPNN-- 158
           LS                       D DVV  +SL+D YA+CG           +P    
Sbjct: 152 LSSLVSMYSKCGEIELCRKVFDRMEDKDVVSWNSLIDGYARCGEIELALEMFEEMPEKDS 211

Query: 159 ------------------ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
                             AR VFD + ++NSVSW AM++ Y ++G    A E+F+Q P R
Sbjct: 212 FSWTILIDGLSKSGKLEAARDVFDRMPIRNSVSWNAMINGYMKAGDSNTAKELFDQMPER 271

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           +L  W ++++G  +++    A   F  M RE +      +L + V A +    L  G+ +
Sbjct: 272 SLVTWNSMITGYERNKQFTKALKLFEVMLREDISPNYTTILGA-VSAASGMVSLGTGRWV 330

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H  ++  G+++   +   +++MY+KC  + +A  +F  + +K +  WTS+IVG   HG  
Sbjct: 331 HSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLGMHGLV 390

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           E+TL L+DEM   G+KP+ +TF+G++ ACSH G      + FK M  DYGI PS++HY C
Sbjct: 391 EQTLELFDEMCRTGLKPHAITFIGVLNACSHAGFAEDAHRYFKMMTYDYGIKPSIEHYGC 450

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           L+D+L R+GHL+EA++ I+ MP + ++  W +LLS  + H N  MG   A HL+ L P+ 
Sbjct: 451 LIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHGNIRMGEYAAQHLIDLAPDT 510

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
              Y++LSN+YA+A +W+ V +VR++M    +KK+PG S IE     H F  G+ SHP  
Sbjct: 511 TGCYVILSNMYAAAGLWEKVRQVREMMKKKGMKKDPGCSSIEHQGSIHEFIVGDKSHPQT 570

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQ-KEKERQLFWHSERLAVAYGLLKSVPGT 559
           +EI+  L E+  ++   G++PDT+ VL  +E+  EKE +L  HSERLA+A+GLL    G+
Sbjct: 571 EEIYIKLCEMKKKLNVAGHIPDTTQVLLCLEEDNEKEAELETHSERLAIAFGLLNIKHGS 630

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +R++KNLR+C DCH V K++S I  REI++RD +R+HHFK G CSC DFW
Sbjct: 631 PIRIIKNLRICNDCHAVTKLLSHIYNREIIIRDGSRFHHFKSGSCSCKDFW 681



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 77/172 (44%), Gaps = 13/172 (7%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           T + +H+ I+K G    G L   LI+ Y KC  V+ A  +   +P++    W S++    
Sbjct: 326 TGRWVHSYIVKSGFKTDGVLGTLLIEMYSKCGSVKSALRVFRSIPKKKLGHWTSVIVGLG 385

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
              L ++T+ +F  M     L+P    F  ++ AC   G     +  H  F +  +  D 
Sbjct: 386 MHGLVEQTLELFDEM-CRTGLKPHAITFIGVLNACSHAG---FAEDAHRYFKMMTY--DY 439

Query: 141 VVKSS------LVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSG 185
            +K S      L+D+  + G    A+   + + +K N V WT++LS   + G
Sbjct: 440 GIKPSIEHYGCLIDVLCRAGHLEEAKDTIERMPIKANKVIWTSLLSGSRKHG 491


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/606 (36%), Positives = 340/606 (56%), Gaps = 34/606 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           YL  L  C+  +     K +H+ I + G      + N LI  Y +C  +  A  L   MP
Sbjct: 333 YLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP 392

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +RD +SW +I+  Y +     + + ++  M + + ++P    F  L+ AC +  A   GK
Sbjct: 393 KRDLISWNAIIAGYARREDRGEAMRLYKQMQS-EGVKPGRVTFLHLLSACANSSAYADGK 451

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            +H          +D+++S         G+ +N                 A+++ Y R G
Sbjct: 452 MIH----------EDILRS---------GIKSNGHLA------------NALMNMYRRCG 480

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
              +A  +FE    R++  W ++++G  Q  +   A+  F EM+ E ++  D +  +S++
Sbjct: 481 SLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELE-PDNITFASVL 539

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
             C N   LELGKQIHG +   G +  + + NA+++MY +C  +  A+++F  ++ +DV+
Sbjct: 540 SGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVM 599

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE-VTFVGLIYACSHVGLVGKGRKLFKS 364
           SWT++I G A  G+  + + L+ +M + G +P +  TF  ++ AC+H GLV +G ++F S
Sbjct: 600 SWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLVLEGYQIFSS 659

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           M  +YG+ P+++HY CL+ LL R+    EAE LI  MPF PD   W  LL AC+ H N  
Sbjct: 660 MESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIA 719

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +    AN+ L L   +P+ YILLSNVYA+A  W  V+K+R++M    ++KEPG S+IE  
Sbjct: 720 LAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVD 779

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
              H F A + SHP   EI+  L  L  EM+  GY PDT  VLHD+ +  +E  L  HSE
Sbjct: 780 NIIHEFIAADRSHPETAEIYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSE 839

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           RLA+AYGL+K+ PGT +R+ KNLR+CGDCH   K IS++  REI+ RD+ R+H FK+GKC
Sbjct: 840 RLAIAYGLIKTPPGTPIRIFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKC 899

Query: 605 SCNDFW 610
           SC D+W
Sbjct: 900 SCEDYW 905



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 132/455 (29%), Positives = 216/455 (47%), Gaps = 43/455 (9%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP---LPNTLIDAYGKCDLVQYAHHLLE 62
           Y+  L+ C R ++    K +HAQ+++ G+   GP   L N LI+ Y KC  V  AH + +
Sbjct: 30  YVALLQNCTRKRLLPEAKRIHAQMVEAGV---GPDIFLSNLLINMYVKCRSVLDAHQVFK 86

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
           EMP+RD +SW S+++ Y Q    +K   +F  M     + P+   + S++ AC S     
Sbjct: 87  EMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI-PNKITYISILTACYSPAELE 145

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
            GK++H+  + + +  D  V++SL+ MY KCG    AR VF  I  ++ VS+  ML  YA
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           +    K+ + +F Q                               M  EG+   D +   
Sbjct: 206 QKAYVKECLGLFGQ-------------------------------MSSEGIS-PDKVTYI 233

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           +++ A    ++L+ GK+IH L +  G  S + +  A+V M  +C D+ +AK  F  +  +
Sbjct: 234 NLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADR 293

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           DVV + ++I   AQHG   E    Y  M S GV  N  T++ ++ ACS    +  G KL 
Sbjct: 294 DVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLI 352

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
            S I + G +  +Q    L+ + +R G L +A  L   MP + D  +W A+++      +
Sbjct: 353 HSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAGYARRED 411

Query: 423 TEMGTRVANHLLS--LKPEDPSSYILLSNVYASAA 455
                R+   + S  +KP   +   LLS    S+A
Sbjct: 412 RGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 160/319 (50%), Gaps = 34/319 (10%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           + D   + +L++ C         K++HA  V +    D  + + L++MY KC    +A  
Sbjct: 24  ETDRATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQ 83

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF  +  ++ +SW +++S YA+ G KK A ++FE                          
Sbjct: 84  VFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFE-------------------------- 117

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
                EM+  G  I + +   SI+ AC + A LE GK+IH  +I  GY+    + N+++ 
Sbjct: 118 -----EMQNAGF-IPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLS 171

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC D+  A+ +F  +  +DVVS+ +++   AQ    +E L L+ +M S G+ P++VT
Sbjct: 172 MYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVT 231

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           ++ L+ A +   ++ +G+++ K  +E+ G+   ++  T L+ +  R G +D A+   K +
Sbjct: 232 YINLLDAFTTPSMLDEGKRIHKLTVEE-GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGI 290

Query: 402 PFEPDEPTWAALLSACKHH 420
             + D   + AL++A   H
Sbjct: 291 A-DRDVVVYNALIAALAQH 308


>gi|302770521|ref|XP_002968679.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
 gi|300163184|gb|EFJ29795.1| hypothetical protein SELMODRAFT_90123 [Selaginella moellendorffii]
          Length = 818

 Score =  432 bits (1110), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 221/594 (37%), Positives = 346/594 (58%), Gaps = 8/594 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA+I+  G      +   LI+ YGKC     A  + ++M +RD VSW  ++  Y   
Sbjct: 227 RKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLN 286

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV- 141
               + + ++   L ++  +     F S++ AC S+ A   G+ VH+  +L    D +V 
Sbjct: 287 GDFHEALELYQK-LDMEGFKRTKATFVSILGACSSVKALAQGRLVHS-HILERGLDSEVA 344

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME---IFEQAP 198
           V ++LV+MYAKCG    AR VF+++K +++V+W+ ++ AYA +G  KDA +   +F++  
Sbjct: 345 VATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKDARKARKVFDRLG 404

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            R+   W A+++  VQ+   + A   F EM        D +   +++ ACA+   L   K
Sbjct: 405 SRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLEACASLGRLSEVK 464

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
            +H  +     ES + ++N +++MYA+C  +  A+ +F   + K VVSWT+++   +Q+G
Sbjct: 465 ALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAKEKTVVSWTAMVAAFSQYG 524

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
           +  E L L+ EM   GVKP++VT+  +++ C+H G + +G + F  M E + + P+  H+
Sbjct: 525 RYAEALDLFQEMDLEGVKPDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTADHF 584

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
             ++DLL RSG L +A+ L+++MPFEPD   W   L+AC+ H   E+G   A  +  L P
Sbjct: 585 AAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLELGEAAAERVYELDP 644

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
              + YI +SN+YA+  MW+ V+ VRK M    +KK PG S+IE     H F +G   HP
Sbjct: 645 SSTAPYIAMSNIYAAHGMWEKVASVRKKMEERGLKKLPGLSFIEVDGKLHEFSSGGKYHP 704

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSV-P 557
             DEI E LT L   M+  GYVPDT +VLHD+ + EKE  L +HSE++A+A+GL+ S   
Sbjct: 705 RTDEICEELTRLHGLMRAAGYVPDTKAVLHDVSEGEKETMLLYHSEKMAIAFGLVSSRGS 764

Query: 558 GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF-KDGKCSCNDFW 610
           G  +RVVKNLRVC DCH   K I+RI  R+I+VRD  R+H F  DGKCSC D+W
Sbjct: 765 GEPIRVVKNLRVCSDCHTATKFIARIAGRDIIVRDCNRFHRFSSDGKCSCGDYW 818



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 192/399 (48%), Gaps = 47/399 (11%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTAYN 80
           + LH +I      +   + N LI  YGKCD +  A  + E M   QR+ VSW +++ AY 
Sbjct: 27  RALHERIRCSRFERDTMVGNALISMYGKCDSLVDARSVFESMDWRQRNVVSWNAMIAAYA 86

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           Q     + + ++  M  L  L  DH  F S++ AC SL     G+++H     S      
Sbjct: 87  QNGHSTEALVLYWRM-NLQGLGTDHVTFVSVLGACSSLAQ---GREIHNRVFYSGLDSFQ 142

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            + ++LV MYA+ G   +A+ +F S++ ++  SW A++ A+++SG    A+ IF++    
Sbjct: 143 SLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEMKCD 202

Query: 201 ---NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
              N   +  ++SG                                         VL  G
Sbjct: 203 VKPNSTTYINVISGFSTPE------------------------------------VLPEG 226

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           ++IH  ++A G+++ L ++ A+++MY KC     A+++F +M+++D+VSW  +I     +
Sbjct: 227 RKIHAEIVANGFDTDLVVATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLN 286

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G   E L LY ++   G K  + TFV ++ ACS V  + +GR L  S I + G+   +  
Sbjct: 287 GDFHEALELYQKLDMEGFKRTKATFVSILGACSSVKALAQGR-LVHSHILERGLDSEVAV 345

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            T L+++ ++ G L+EA  +  AM    D   W+ L+ A
Sbjct: 346 ATALVNMYAKCGSLEEARKVFNAMK-NRDAVAWSTLIGA 383



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 202/429 (47%), Gaps = 71/429 (16%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H ++   GL  +  L N L+  Y +   V  A  + + +  RD  SW +++ A++Q+
Sbjct: 127 REIHNRVFYSGLDSFQSLANALVTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQS 186

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 + IF  M     ++P+   + +++    +      G+++HA  V + F  D VV
Sbjct: 187 GDWSGALRIFKEMKC--DVKPNSTTYINVISGFSTPEVLPEGRKIHAEIVANGFDTDLVV 244

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L++MY KCG  + AR VFD +K ++ VSW  M+  Y  +G   +A+E++++  +   
Sbjct: 245 ATALINMYGKCGSSHEAREVFDKMKKRDMVSWNVMIGCYVLNGDFHEALELYQKLDMEGF 304

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                     +R     V      SI+GAC++   L  G+ +H 
Sbjct: 305 --------------------------KRTKATFV------SILGACSSVKALAQGRLVHS 332

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA------- 315
            ++  G +S + ++ A+V+MYAKC  +  A+ +F  M+ +D V+W+++I   A       
Sbjct: 333 HILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDAVAWSTLIGAYASNGYGKD 392

Query: 316 ---------------------------QHGQAEETLALYDEMV-SAGVKPNEVTFVGLIY 347
                                      Q+G A   + ++ EM  +AG+KP+ VTF+ ++ 
Sbjct: 393 ARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREMTGAAGLKPDAVTFIAVLE 452

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           AC+ +G + + + L  + I +  +  ++     L+++ +R G L+EAE L  A   E   
Sbjct: 453 ACASLGRLSEVKAL-HAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAK-EKTV 510

Query: 408 PTWAALLSA 416
            +W A+++A
Sbjct: 511 VSWTAMVAA 519



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 155/315 (49%), Gaps = 40/315 (12%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           QPD+  F +++ +C S G    G+ +H     S F  D +V ++L+ MY KC    +AR+
Sbjct: 4   QPDNVTFLTVLCSCSSCGDVVEGRALHERIRCSRFERDTMVGNALISMYGKCDSLVDARS 63

Query: 162 VFDSI--KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           VF+S+  + +N VSW AM++AYA++G   +A+ ++          W   + GL       
Sbjct: 64  VFESMDWRQRNVVSWNAMIAAYAQNGHSTEALVLY----------WRMNLQGLG------ 107

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
                            D +   S++GAC++ A    G++IH  V   G +S   ++NA+
Sbjct: 108 ----------------TDHVTFVSVLGACSSLA---QGREIHNRVFYSGLDSFQSLANAL 148

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           V MYA+   +  AK +F  ++ +D  SW ++I+  +Q G     L ++ EM    VKPN 
Sbjct: 149 VTMYARFGSVGDAKRMFQSLQTRDETSWNAVILAHSQSGDWSGALRIFKEM-KCDVKPNS 207

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
            T++ +I   S   ++ +GRK+   ++ + G    L   T L+++  + G   EA  +  
Sbjct: 208 TTYINVISGFSTPEVLPEGRKIHAEIVAN-GFDTDLVVATALINMYGKCGSSHEAREVFD 266

Query: 400 AMPFEPDEPTWAALL 414
            M  + D  +W  ++
Sbjct: 267 KMK-KRDMVSWNVMI 280



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 145/354 (40%), Gaps = 80/354 (22%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C+  +     + +H+ I++ GL     +   L++ Y KC  ++ A  +   M  RD 
Sbjct: 315 LGACSSVKALAQGRLVHSHILERGLDSEVAVATALVNMYAKCGSLEEARKVFNAMKNRDA 374

Query: 70  VSWASI----------------------------------LTAYNQANLPQKTISIFSTM 95
           V+W+++                                  +T Y Q       + IF  M
Sbjct: 375 VAWSTLIGAYASNGYGKDARKARKVFDRLGSRDTISWNAMITTYVQNGCAVAAMKIFREM 434

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
                L+PD   F ++++AC SLG     K +HA    S    + VV ++L++MYA+CG 
Sbjct: 435 TGAAGLKPDAVTFIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGS 494

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
              A  +F + K K  VSWTAM++A+++ GR  +A+++F+                    
Sbjct: 495 LEEAERLFAAAKEKTVVSWTAMVAAFSQYGRYAEALDLFQ-------------------- 534

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG-------KQIHGLVIALG 268
                      EM  EGV   D +  +SI+  C +   LE G        ++H L     
Sbjct: 535 -----------EMDLEGVK-PDDVTYTSILFVCTHGGSLEQGWRYFTDMAELHALAPTAD 582

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAE 321
           + +      A+VD+  +   +  AK++   M    D V+W + +     HG+ E
Sbjct: 583 HFA------AMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTFLTACRIHGKLE 630



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/203 (25%), Positives = 97/203 (47%), Gaps = 19/203 (9%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L  CA       VK LHAQI +  L     + NTLI+ Y +C  ++ A  L     
Sbjct: 447 FIAVLEACASLGRLSEVKALHAQISESELESNVVVTNTLINMYARCGSLEEAERLFAAAK 506

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG- 124
           ++  VSW +++ A++Q     + + +F  M  L+ ++PD   + S++  C   G+   G 
Sbjct: 507 EKTVVSWTAMVAAFSQYGRYAEALDLFQEM-DLEGVKPDDVTYTSILFVCTHGGSLEQGW 565

Query: 125 ------KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAM 177
                  ++HA   L+P  D     +++VD+  + G   +A+ + +S+  + + V+W   
Sbjct: 566 RYFTDMAELHA---LAPTADH---FAAMVDLLGRSGRLFDAKELLESMPFEPDPVAWMTF 619

Query: 178 LSAYARSGRKKDAMEIFEQAPVR 200
           L+A    G+    +E+ E A  R
Sbjct: 620 LTACRIHGK----LELGEAAAER 638


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 214/567 (37%), Positives = 339/567 (59%), Gaps = 38/567 (6%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L N LI+ Y K +L+  AH L ++MPQR+ +SW ++++AY++  + QK + +   ML  D
Sbjct: 50  LVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLR-D 108

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            ++P+ + ++S+++AC  +   R+   +H   +      D  V+S+L+D++AK G P   
Sbjct: 109 GVRPNVYTYSSVLRACNGMSDVRM---LHCGIIKEGLESDVYVRSALIDVFAKLGEP--- 162

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
                                       +DA+ +F++    +  +W +++ G  Q+    
Sbjct: 163 ----------------------------EDALSVFDEMVTGDAIVWNSIIGGFAQNSRSD 194

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
            A   F  M+R G  I +   L+S++ AC   A+LELG Q H  V  + Y+  L ++NA+
Sbjct: 195 VALELFKRMKRAGF-IAEQATLTSVLRACTGLALLELGMQAH--VHIVKYDQDLILNNAL 251

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           VDMY KC  +  A+ +F +M+ +DV++W+++I G AQ+G ++E L L++ M S+G KPN 
Sbjct: 252 VDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNY 311

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           +T VG+++ACSH GL+  G   F+SM + YGI P  +HY C++DLL ++G LD+A  L+ 
Sbjct: 312 ITIVGVLFACSHAGLLEDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLN 371

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
            M  EPD  TW  LL AC+  RN  +    A  +++L PED  +Y +LSN+YA++  W  
Sbjct: 372 EMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTVLSNIYANSQKWDS 431

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
           V ++RK M  + +KKEPG S+IE  K  H F  G+ SHP   E+ + L +L   +   GY
Sbjct: 432 VEEIRKRMRDIGIKKEPGCSWIEVNKQIHAFIIGDESHPQIVEVNKKLNQLIHRLIGIGY 491

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
           VP+T+ VL D+E ++ E  L  HSE+LA+A+GL+      V+R+ KNLR+CGDCH+  K+
Sbjct: 492 VPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPSEKVIRIRKNLRICGDCHVFCKL 551

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSC 606
            S++  R IV+RD  RYHHF+DGKCSC
Sbjct: 552 ASKLENRNIVIRDPIRYHHFQDGKCSC 578



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 3/174 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           V+ LH  IIK GL     + + LID + K    + A  + +EM   D + W SI+  + Q
Sbjct: 130 VRMLHCGIIKEGLESDVYVRSALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQ 189

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
            +     + +F  M     +  +     S+++AC  L    LG Q H   V   +  D +
Sbjct: 190 NSRSDVALELFKRMKRAGFI-AEQATLTSVLRACTGLALLELGMQAHVHIV--KYDQDLI 246

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
           + ++LVDMY KCG   +AR VF+ +K ++ ++W+ M+S  A++G  ++A+++FE
Sbjct: 247 LNNALVDMYCKCGSLEDARRVFNQMKERDVITWSTMISGLAQNGYSQEALKLFE 300



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 91/180 (50%), Gaps = 5/180 (2%)

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           D    S ++  C +   +  G  I   +   G++  +F+ N +++MY K + +  A  +F
Sbjct: 12  DSATYSELIKCCLSHRAVHEGNLICRHLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLF 71

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
            +M +++V+SWT++I   ++    ++ L L   M+  GV+PN  T+  ++ AC+ +  V 
Sbjct: 72  DQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDGVRPNVYTYSSVLRACNGMSDV- 130

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             R L   +I++ G+   +   + L+D+ ++ G  ++A ++   M    D   W +++  
Sbjct: 131 --RMLHCGIIKE-GLESDVYVRSALIDVFAKLGEPEDALSVFDEM-VTGDAIVWNSIIGG 186



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 83/176 (47%), Gaps = 11/176 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C    +AL    + A +  +   Q   L N L+D Y KC  ++ A  +  +M +RD 
Sbjct: 219 LRACT--GLALLELGMQAHVHIVKYDQDLILNNALVDMYCKCGSLEDARRVFNQMKERDV 276

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
           ++W+++++   Q    Q+ + +F  M +    +P++     ++ AC   G    G    +
Sbjct: 277 ITWSTMISGLAQNGYSQEALKLFELMKS-SGTKPNYITIVGVLFACSHAGLLEDGWYYFR 335

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
            +   + ++P  +       ++D+  K G  ++A  + + ++ + ++V+W  +L A
Sbjct: 336 SMKKLYGINPGREH---YGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGA 388


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/607 (35%), Positives = 345/607 (56%), Gaps = 39/607 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C    +      +H   +K G      + N  ID Y KC  +  A  +  +MP R+ 
Sbjct: 112 LKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNL 171

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++  +      +K++ +F  M    ++ PD F F S +KACG+LGA R G Q+HA
Sbjct: 172 VSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEV-PDEFTFTSTLKACGALGAIRGGTQIHA 230

Query: 130 CFVLS--PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
             +    P    +++ S++VD+YAKC                               G  
Sbjct: 231 SLITRGFPISIRNIIASAIVDLYAKC-------------------------------GYL 259

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
            +A ++F++   +NL  W+AL+ G  Q  N ++A   F ++R E V  VD  VLS ++G 
Sbjct: 260 FEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLR-ESVSNVDGFVLSIMMGV 318

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
            A+ A++E GKQ+H  ++ +     + ++N+I+DMY KC     A+ +F  M+ ++VVSW
Sbjct: 319 FADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSW 378

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           T +I G  +HG  E+ + L++ M   G++ +EV ++ L+ ACSH GL+ + ++ F  +  
Sbjct: 379 TVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCN 438

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
           ++ + P+++HY C++D+L R+G L EA+NLI+ M  +P+E  W  LLSAC+ H N E+G 
Sbjct: 439 NHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGR 498

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
            V   L  +  ++P +Y+++SN+YA A  W+   +VRKL+    +KKE G S++E  K  
Sbjct: 499 EVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAKGLKKEAGQSWVEINKEI 558

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRR-GYVPDTSSVLHDMEQKEKERQLFWHSERL 546
           H FY G+ +HPL ++I E+L E++  +K   GY       LHD+E++ KE  L  HSE+L
Sbjct: 559 HFFYGGDDTHPLTEKIHEMLKEMERRVKEEVGYAYGLRFALHDVEEESKEENLRVHSEKL 618

Query: 547 AVAYGLL---KSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           A+   L+       G V+RV KNLRVCGDCH  +K +S+I K+  VVRDA R+H F+DG 
Sbjct: 619 AIGLALVCDGMEKKGGVIRVFKNLRVCGDCHEFIKGLSKILKKVFVVRDANRFHRFEDGL 678

Query: 604 CSCNDFW 610
           CSC D+W
Sbjct: 679 CSCGDYW 685



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 149/317 (47%), Gaps = 36/317 (11%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
            A L++ C   G    G QVHA  V   F  D ++ + L+DMY KC   + A +VFD   
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDR-- 64

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
                    ML                     RN+  WTAL+ G +Q  N   +     E
Sbjct: 65  ---------MLE--------------------RNVVSWTALMCGYLQEGNAKGSLALLCE 95

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M   GV   +    S+ + AC    V+E G QIHG+ +  G+E    + NA +DMY+KC 
Sbjct: 96  MGYSGVK-PNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCG 154

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            I  A+ +F +M  +++VSW ++I G    G   ++L L+  M   G  P+E TF   + 
Sbjct: 155 RIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLK 214

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHY--TCLLDLLSRSGHLDEAENLIKAMPFEP 405
           AC  +G +  G ++  S+I   G   S+++   + ++DL ++ G+L EA+ +   +  + 
Sbjct: 215 ACGALGAIRGGTQIHASLI-TRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIE-QK 272

Query: 406 DEPTWAALLSACKHHRN 422
           +  +W+AL+       N
Sbjct: 273 NLISWSALIQGFAQEGN 289



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/216 (30%), Positives = 110/216 (50%), Gaps = 3/216 (1%)

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           L+ ++  C+   + + G Q+H   + +G+   L ++N ++DMY KCS +  A  +F RM 
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            ++VVSWT+++ G  Q G A+ +LAL  EM  +GVKPNE TF   + AC  +G+V  G +
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           +   M    G           +D+ S+ G +  AE +   MPF  +  +W A+++   H 
Sbjct: 127 I-HGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFR-NLVSWNAMIAGHTHE 184

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
            N    + V    +  + E P  +   S + A  A+
Sbjct: 185 GNGRK-SLVLFQRMQGQGEVPDEFTFTSTLKACGAL 219


>gi|357506719|ref|XP_003623648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498663|gb|AES79866.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 707

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/632 (36%), Positives = 356/632 (56%), Gaps = 74/632 (11%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +I  Y K  +V  A  + + MP+R+ VSW S++  Y Q  + ++   +F  M      
Sbjct: 87  NGMISGYVKNGMVADARKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEM------ 140

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P   V +  V   G L  +R+       F + P   D VV ++++  Y + G  + AR 
Sbjct: 141 -PRRNVVSWTVMIGGLLKESRI-DDAKKLFDMIPE-KDVVVVTNMIGGYCQVGRLDEARE 197

Query: 162 VFDSIKLKN-------------------------------SVSWTAMLSAYARSGRKKDA 190
           +FD +K++N                                VSWTAML  Y +SGR K+A
Sbjct: 198 LFDEMKVRNVFTWTTMVSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEA 257

Query: 191 MEIFEQAPV-------------------------------RNLFLWTALVSGLVQSRNEI 219
            E+FE  PV                               R+   W A++    +   ++
Sbjct: 258 FELFEAMPVKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGTWNAMIKVFERKGLDL 317

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           +A   F  M+REGV +  P ++S ++  CA+ A L+ G+Q+H  ++   ++  L++++ +
Sbjct: 318 EALGLFARMQREGVALNFPSMIS-VLSVCASLASLDHGRQVHARLVRSEFDQDLYVASVL 376

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           + MY KC D++ AK IF R   KDVV W S+I G +QHG  EE L ++ +M S+GV+P+E
Sbjct: 377 ITMYVKCGDLVRAKGIFNRFLFKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVQPDE 436

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           VTF+G++ ACS+ G V +G ++F++M   Y + P ++HY C++DLL R+G +DEA  L++
Sbjct: 437 VTFIGVLSACSYSGKVKEGFEIFEAMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVE 496

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
            MP EPD   W ALL AC++H   ++       L  L+P++   Y+LLS++YA+   W+ 
Sbjct: 497 KMPMEPDAIVWGALLGACRNHMKLDLAEVAVEKLAKLEPKNAGPYVLLSHMYATKGRWRD 556

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGET-SHPLKDEIFELLTELDAEMKRRG 518
           V  +RK ++   V K PG S+IE  K  H+F  G++ SHP +  I ++L +L   ++  G
Sbjct: 557 VEVLRKKIN-RRVIKFPGCSWIEVEKKVHMFTGGDSKSHPEQHMITQMLEKLSGFLREAG 615

Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
           Y PD S VLHD++++EK   L +HSERLAVAYGLLK   G  +RV+KNLRVCGDCH  +K
Sbjct: 616 YCPDGSFVLHDVDEEEKTHSLGYHSERLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIK 675

Query: 579 MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I+++T REI++RDA R+HHFKDG CSC DFW
Sbjct: 676 LIAKVTGREIILRDANRFHHFKDGSCSCKDFW 707



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 176/406 (43%), Gaps = 79/406 (19%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEE--MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
            + I  YG+   +  A  + +   +PQR   SW ++++AY +++ P+  + +F  M    
Sbjct: 23  TSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALLLFDQM---- 78

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
              P                                   + V  + ++  Y K G+  +A
Sbjct: 79  ---PQR---------------------------------NTVSFNGMISGYVKNGMVADA 102

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           R VFD +  +N VSWT+M+  Y + G  ++A ++F + P RN+  WT ++ GL++  + I
Sbjct: 103 RKVFDVMPERNVVSWTSMVRGYVQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKE-SRI 161

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           D      +M  E     D +V+++++G       L+  +++   +        +F    +
Sbjct: 162 DDAKKLFDMIPEK----DVVVVTNMIGGYCQVGRLDEARELFDEMKVRN----VFTWTTM 213

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           V  YAK   +  A+ +F  M  ++ VSWT++++G  Q G+ +E   L++ M         
Sbjct: 214 VSGYAKNGRVDVARKLFEVMPERNEVSWTAMLMGYTQSGRMKEAFELFEAMP-------- 265

Query: 340 VTFVGLIYACSHV----GLVG---KGRKLFKSMIE-DYGITPSLQHYTCLLDLLSRSGHL 391
              V  I AC+ +    GL G   + R +F+ M E D G       +  ++ +  R G  
Sbjct: 266 ---VKWIVACNEMILQFGLAGEMHRARMMFEGMKERDEGT------WNAMIKVFERKGLD 316

Query: 392 DEAENLIKAMPFEP---DEPTWAALLSACKHHRNTEMGTRVANHLL 434
            EA  L   M  E    + P+  ++LS C    + + G +V   L+
Sbjct: 317 LEALGLFARMQREGVALNFPSMISVLSVCASLASLDHGRQVHARLV 362



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 115/251 (45%), Gaps = 21/251 (8%)

Query: 166 IKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV--RNLFLWTALVSGLVQSRNEIDAFY 223
           ++ ++  S T+ +S Y R G   +A ++F+  P+  R +  W A+VS   +S    DA  
Sbjct: 14  VQARSLCSNTSAISRYGRIGDIHNARKVFDNTPLPQRTIASWNAMVSAYFESHKPRDALL 73

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            F +M +      + +    I G   N  V +  K     V  +  E  +    ++V  Y
Sbjct: 74  LFDQMPQRNTVSFNGM----ISGYVKNGMVADARK-----VFDVMPERNVVSWTSMVRGY 124

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
            +   +  A+ +F  M R++VVSWT +I G  +  + ++   L+D +    V    V   
Sbjct: 125 VQEGMVEEAEKLFWEMPRRNVVSWTVMIGGLLKESRIDDAKKLFDMIPEKDV----VVVT 180

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            +I     VG + + R+LF  M        ++  +T ++   +++G +D A  L + MP 
Sbjct: 181 NMIGGYCQVGRLDEARELFDEM-----KVRNVFTWTTMVSGYAKNGRVDVARKLFEVMP- 234

Query: 404 EPDEPTWAALL 414
           E +E +W A+L
Sbjct: 235 ERNEVSWTAML 245



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 88/186 (47%), Gaps = 4/186 (2%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VCA        + +HA++++    Q   + + LI  Y KC  +  A  +      +D 
Sbjct: 342 LSVCASLASLDHGRQVHARLVRSEFDQDLYVASVLITMYVKCGDLVRAKGIFNRFLFKDV 401

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V W S++T Y+Q  L ++ +++F  M +   +QPD   F  ++ AC   G  + G ++  
Sbjct: 402 VMWNSMITGYSQHGLGEEALNVFHDMCS-SGVQPDEVTFIGVLSACSYSGKVKEGFEIFE 460

Query: 130 CFVLSPFCDDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRK 187
               +   +  +   + +VD+  + G  + A  + + + ++ +++ W A+L A  R+  K
Sbjct: 461 AMKCTYQVEPGIEHYACMVDLLGRAGRVDEAMELVEKMPMEPDAIVWGALLGA-CRNHMK 519

Query: 188 KDAMEI 193
            D  E+
Sbjct: 520 LDLAEV 525


>gi|225446691|ref|XP_002277494.1| PREDICTED: pentatricopeptide repeat-containing protein At2g41080
           [Vitis vinifera]
          Length = 657

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/638 (36%), Positives = 343/638 (53%), Gaps = 64/638 (10%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQ-------- 55
           S + H L+ C         K LH+ II  G      + N L++ Y KC  +         
Sbjct: 53  SLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLFGV 112

Query: 56  -----------------------YAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIF 92
                                   A  + +EMP+R+  +W +++    Q    ++ + +F
Sbjct: 113 MPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLGLF 172

Query: 93  STMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK 152
           S M  L  L PD F   S+++ C  L A   G+QVH       F  + VV SSL  MY K
Sbjct: 173 SRMNELGFL-PDEFALGSVLRGCAGLRALVAGRQVHGYVRKCGFEFNLVVVSSLAHMYMK 231

Query: 153 CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGL 212
           CG       +  ++  +N V+W  +++  A++G  ++ ++ +                  
Sbjct: 232 CGSLGEGERLIRAMPSQNVVAWNTLIAGRAQNGYPEEVLDQYNM---------------- 275

Query: 213 VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC 272
                          M+  G    D +   S++ +C+  A L  G+QIH  VI  G    
Sbjct: 276 ---------------MKMAGFR-PDKITFVSVISSCSELATLGQGQQIHAEVIKAGASLI 319

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           + + ++++ MY++C  +  +  +F      DVV W+S+I     HG+  E + L+++M  
Sbjct: 320 VSVISSLISMYSRCGCLEYSLKVFLECENGDVVCWSSMIAAYGFHGRGVEAIDLFNQMEQ 379

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
             ++ N+VTF+ L+YACSH GL  KG K F  M+E YG+ P L+HYTC++DLL R G ++
Sbjct: 380 EKLEANDVTFLSLLYACSHCGLKEKGIKFFDLMVEKYGVKPRLEHYTCMVDLLGRYGSVE 439

Query: 393 EAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           EAE LI++MP + D  TW  LLSACK H+ TEM  R++  +  L P DP  Y+LLSN++A
Sbjct: 440 EAEALIRSMPVKADVITWKTLLSACKIHKKTEMARRISEEVFRLDPRDPVPYVLLSNIHA 499

Query: 453 SAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDA 512
           S   W  VS VRK M   ++KKEPG S++E     H F  G+ SHP   EI   L EL +
Sbjct: 500 SDKRWDDVSDVRKAMRDRKLKKEPGISWLEVKNQIHQFCMGDKSHPKSVEIASYLRELTS 559

Query: 513 EMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGD 572
           EMK+RGYVPD  SVLHDM+ ++KE  L  HSE+LA+A+ LL +  GT +RV+KNLRVC D
Sbjct: 560 EMKKRGYVPDIDSVLHDMDVEDKEYSLVHHSEKLAIAFALLYTPVGTPIRVIKNLRVCSD 619

Query: 573 CHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           CH+ +K IS I+ REI+VRD++R+HHFK+G+CSC D+W
Sbjct: 620 CHVAIKYISEISNREIIVRDSSRFHHFKNGRCSCGDYW 657



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 33/211 (15%)

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           +P + S ++ +C +   L LGKQ+H L+I  G  S  FISN ++++Y+KC  +  A  +F
Sbjct: 51  EPSLFSHLLQSCISENSLSLGKQLHSLIITSGCSSDKFISNHLLNLYSKCGQLDTAITLF 110

Query: 297 GRMRRKDVVS-------------------------------WTSIIVGTAQHGQAEETLA 325
           G M RK+++S                               W +++ G  Q    EE L 
Sbjct: 111 GVMPRKNIMSCNILINGYFRSGDWVTARKMFDEMPERNVATWNAMVAGLIQFEFNEEGLG 170

Query: 326 LYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385
           L+  M   G  P+E     ++  C+ +  +  GR++    +   G   +L   + L  + 
Sbjct: 171 LFSRMNELGFLPDEFALGSVLRGCAGLRALVAGRQV-HGYVRKCGFEFNLVVVSSLAHMY 229

Query: 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            + G L E E LI+AMP + +   W  L++ 
Sbjct: 230 MKCGSLGEGERLIRAMPSQ-NVVAWNTLIAG 259


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/632 (34%), Positives = 349/632 (55%), Gaps = 44/632 (6%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           T++T+H++II   L     L   L+ AY     V  A  + +E+P+R+ +    ++ +Y 
Sbjct: 57  TLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYV 116

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
                 + + +F TM   + ++PDH+ F  ++KAC   G   +G+++H            
Sbjct: 117 NNGFYGEGVKVFGTMCGCN-VRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTL 175

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP-- 198
            V + LV MY KCG  + AR V D +  ++ VSW +++  YA++ R  DA+E+  +    
Sbjct: 176 FVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESV 235

Query: 199 --------------------------VRNLFL---------WTALVSGLVQSRNEIDAFY 223
                                     V+++F          W  ++   +++   ++A  
Sbjct: 236 KISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVE 295

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            +  M  +G +  D + ++S++ AC + + L LGK+IHG +        L + NA++DMY
Sbjct: 296 LYSRMEADGFE-PDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMY 354

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           AKC  +  A+D+F  M+ +DVVSWT++I      G+  + +AL+ ++  +G+ P+ + FV
Sbjct: 355 AKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFV 414

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
             + ACSH GL+ +GR  FK M + Y ITP L+H  C++DLL R+G + EA   I+ M  
Sbjct: 415 TTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSM 474

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
           EP+E  W ALL AC+ H +T++G   A+ L  L PE    Y+LLSN+YA A  W+ V+ +
Sbjct: 475 EPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNI 534

Query: 464 RKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDT 523
           R +M    +KK PG S +E  +  H F  G+ SHP  DEI+  L  L  +MK  GYVPD+
Sbjct: 535 RNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDS 594

Query: 524 SSVLHDMEQKEKERQLFWHSERLAVAYGLLKSV-----PGTVLRVVKNLRVCGDCHIVMK 578
            S LHD+E+++KE  L  HSE+LA+ + L+ +          +R+ KNLR+CGDCH+  K
Sbjct: 595 ESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAK 654

Query: 579 MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +IS+IT REI++RD  R+H F+ G CSC D+W
Sbjct: 655 LISQITSREIIIRDTNRFHVFRFGVCSCGDYW 686


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 224/632 (35%), Positives = 347/632 (54%), Gaps = 64/632 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGL--------------HQYGPLPNT------------ 43
           L+ CA+   A   K +HA ++KLG                Q G + N             
Sbjct: 136 LKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDA 195

Query: 44  -----LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                LI  Y     +  A  L +EMP +D VSW +++  Y Q    ++ + +F  M   
Sbjct: 196 ISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKA 255

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           + + P+     S++ AC    A  LG  + +       C +  + ++L+DMY+KCG    
Sbjct: 256 N-VPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQT 314

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           AR                               E+F+    R++  W  ++ G     + 
Sbjct: 315 AR-------------------------------ELFDDMLERDVISWNVMIGGYTHMCSY 343

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            +A   F EM   GV+  +   LS I+ +CA+   ++LGK IH  +          +S +
Sbjct: 344 KEALALFREMLASGVEPTEITFLS-ILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTS 402

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++D+YAKC +I+AA+ +F  M+ K + SW ++I G A HGQA++   L+ +M S G++PN
Sbjct: 403 LIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPN 462

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           E+TFVG++ AC H GLV  G++ F SM++DY I+P  QHY C++DLL R+G  +EAE+L+
Sbjct: 463 EITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLL 522

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
           + M  +PD   W +LL AC+ H   E+G  VA  L  L+P++P +Y+LLSN+YA A  W 
Sbjct: 523 QNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWD 582

Query: 459 HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
            V+++R  ++   +KK PG + IE     H F  G+  HP  ++I+ +L E+D ++K  G
Sbjct: 583 DVARIRTRLNDRGMKKVPGCTTIEVDNVVHEFLVGDKVHPQSEDIYRMLEEVDEQLKVFG 642

Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
           +V DTS VL+DM+++ KE  L  HSE+LA+A+GL+ + PGT +R++KNLRVC +CH   K
Sbjct: 643 FVADTSEVLYDMDEEWKEGALSHHSEKLAIAFGLISTKPGTPIRIIKNLRVCRNCHSATK 702

Query: 579 MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +IS+I  REI+ RD  R+HHFKDG CSCND+W
Sbjct: 703 LISKIFNREIIARDRNRFHHFKDGSCSCNDYW 734



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 13/202 (6%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           +L  L  CA        K +HA I K        L  +LID Y KC  +  A  + + M 
Sbjct: 365 FLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMK 424

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            +   SW +++          K   +FS M + D ++P+   F  ++ AC   G   LG+
Sbjct: 425 IKSLASWNAMICGLAMHGQADKAFELFSKM-SSDGIEPNEITFVGILSACKHAGLVDLGQ 483

Query: 126 QVHACFV----LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
           Q  +  V    +SP          ++D+  + GL   A ++  ++++K +   W ++L A
Sbjct: 484 QFFSSMVQDYKISPKSQH---YGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGA 540

Query: 181 YARSGRKK----DAMEIFEQAP 198
               GR +     A  +FE  P
Sbjct: 541 CRDHGRVELGELVAERLFELEP 562


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/572 (37%), Positives = 336/572 (58%), Gaps = 31/572 (5%)

Query: 42  NTLIDAYGKCDL-VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL-- 98
           NTLI A  +    +  A  L + MPQRDH +W+++++ Y +   P+  ++++  M     
Sbjct: 98  NTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPG 157

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           +    + F  +S + A  +    R G+++H C V+    D            A  G    
Sbjct: 158 NDGADNEFTASSALAAAAAARCGRAGRELH-CHVVRRGID------------AAGG---- 200

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
                      ++V W+A+   YA+ GR  DA  +F++ PVR+   WTA+V         
Sbjct: 201 -----------DAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRG 249

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            + F  F+ M R      +    + ++ ACA FAV   G+Q+HG +   G     F  +A
Sbjct: 250 GEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESA 309

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++ MY+KC D+ +A  +F  M + D+VSWT++I G AQ+GQ EE L  +D  + +G+KP+
Sbjct: 310 LLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPD 369

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
            VTFVG++ AC+H GLV KG ++F S+ E Y I  +  HY C++DLLSRSG  + AE +I
Sbjct: 370 HVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMI 429

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
             M  +P++  WA+LL  C+ H+N  +  R A  L  ++PE+P++Y+ L+N+YAS  ++ 
Sbjct: 430 GNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYASVGLFD 489

Query: 459 HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
            V  VR++M    + K P  S+IE G+  H+F  G+ SHP  DEI+ LL +L  +M   G
Sbjct: 490 EVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEG 549

Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
           YV D   VLHD+E ++KE+ + +HSERLAVA+G++ +  G+ ++V KNLR+CGDCH  +K
Sbjct: 550 YVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIATPEGSPIKVFKNLRICGDCHAAIK 609

Query: 579 MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +IS+I +R+I+VRD+ R+HHFKDG CSC D+W
Sbjct: 610 LISQIVQRDIIVRDSNRFHHFKDGICSCRDYW 641



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 148/294 (50%), Gaps = 12/294 (4%)

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK-KDAMEIFEQAPVRNLFLWTALVSGLV 213
           LP+ A A+F SI   +  S   ++SA +RS R    A E+F++ P R+ F W+ALVSG  
Sbjct: 79  LPD-ALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYT 137

Query: 214 QSRNEIDAFYSFIEMRRE-GVDIVD-PLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271
           +      A   +  M+ E G D  D     SS + A A       G+++H  V+  G ++
Sbjct: 138 RHGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDA 197

Query: 272 C---LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
                 + +A+ DMYAKC  +  A+ +F RM  +D VSWT+++      G+  E   L+ 
Sbjct: 198 AGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFL 257

Query: 329 EMV-SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
            M+ + GV+PNE T+ G++ AC+   +   GR++   M +  G   S    + LL + S+
Sbjct: 258 HMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKS-GTGDSCFAESALLRMYSK 316

Query: 388 SGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPE 439
            G +  A  + +AM  +PD  +W A++S    +   E   R  +  L   +KP+
Sbjct: 317 CGDMGSAVRVFEAMA-KPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPD 369



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 88/218 (40%), Gaps = 42/218 (19%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   LR CA+  +    + +H ++ K G        + L+  Y KC  +  A  + E M 
Sbjct: 272 YAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMA 331

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           + D VSW ++++ Y Q   P++ +  F  M     ++PDH  F  ++ AC          
Sbjct: 332 KPDLVSWTAVISGYAQNGQPEEALRYFD-MFLRSGIKPDHVTFVGVLSAC---------- 380

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTA-----MLSA 180
                                    A  GL +    +F SIK +  +  TA     ++  
Sbjct: 381 -------------------------AHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDL 415

Query: 181 YARSGRKKDAMEIFEQAPVR-NLFLWTALVSGLVQSRN 217
            +RSG+ + A ++     V+ N FLW +L+ G    +N
Sbjct: 416 LSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKN 453


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/631 (36%), Positives = 343/631 (54%), Gaps = 72/631 (11%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   ++ GL     + N L+  Y KC  +  A+ + E + ++D VSW +++T Y+Q 
Sbjct: 254 KQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQI 313

Query: 83  NLPQKTISIFSTM----------------------------------LALDKLQPDHFVF 108
                 +S+F  M                                  + L  L+P+    
Sbjct: 314 GSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTL 373

Query: 109 ASLVKACGSLGATRLGKQVHACFVLSPFC-------DDDVVKSSLVDMYAKCGLPNNARA 161
           ASL+  C S+GA   GKQ HA  + +          DD +V + L+DMYAKC     AR+
Sbjct: 374 ASLLSGCASVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARS 433

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +FDSI+ K+                             +N+  WT ++ G  Q     DA
Sbjct: 434 IFDSIEGKD-----------------------------KNVVTWTVMIGGYAQHGEANDA 464

Query: 222 FYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIHGLVIALGYES-CLFISNAI 279
              F ++ ++   +  +   LS  + ACA    L LG+Q+H   +    ES  L++ N +
Sbjct: 465 LKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCL 524

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           +DMY+K  DI AA+ +F  M+ ++VVSWTS++ G   HG+ EE L L+D+M   G   + 
Sbjct: 525 IDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDG 584

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           +TF+ ++YACSH G+V +G   F  M++ +GITP  +HY C++DLL R+G L+EA  LIK
Sbjct: 585 ITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHYACMVDLLGRAGRLNEAMELIK 644

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
            M  EP    W ALLSA + H N E+G   A+ L  L  E+  SY LLSN+YA+A  W+ 
Sbjct: 645 NMSMEPTAVVWVALLSASRIHANIELGEYAASKLTELGAENDGSYTLLSNLYANARRWKD 704

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
           V+++R LM    ++K PG S+I+  K +  F+ G+ SHP  ++I+ LL +L   +K  GY
Sbjct: 705 VARIRSLMKHTGIRKRPGCSWIQGKKSTTTFFVGDRSHPESEQIYNLLLDLIKRIKDMGY 764

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
           VP TS  LHD++ +EK   LF HSE+LAVAYG+L + PG  +R+ KNLR+CGDCH  +  
Sbjct: 765 VPQTSFALHDVDDEEKGDLLFEHSEKLAVAYGILTTAPGQPIRIHKNLRICGDCHSALTY 824

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           IS I   EIV+RD++R+HHFK G CSC  +W
Sbjct: 825 ISMIIDHEIVLRDSSRFHHFKKGSCSCRSYW 855



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 190/387 (49%), Gaps = 42/387 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM-PQRD 68
           LR C   +  +  K  H QI    +H +  + +  + AY +C     A  LL+ + P   
Sbjct: 37  LRQC---KTLINAKLAHQQIF---VHGFTEMFSYAVGAYIECGASAEAVSLLQRLIPSHS 90

Query: 69  HVSWASILTAYN-QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
            V W + L   + +  L   T+  +  M  L  L PDH+ F  ++KACG + + R G  V
Sbjct: 91  TVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWL-PDHYTFPFVLKACGEIPSLRHGASV 149

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI---KLKNSVSWTAMLSAYARS 184
           HA    +    +  + +S+V MY +CG  ++A  +FD +   K+++ VSW ++L+AY + 
Sbjct: 150 HAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSILAAYVQG 209

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G+ + A+ I  +                      +   YS +++R + + +V+      I
Sbjct: 210 GQSRTALRIAFR----------------------MGNHYS-LKLRPDAITLVN------I 240

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + ACA+   L+ GKQ+HG  +  G    +F+ NA+V MYAKCS +  A  +F  +++KDV
Sbjct: 241 LPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMNEANKVFEGIKKKDV 300

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           VSW +++ G +Q G  +  L+L+  M    +K + +T+  +I   +  G   +   +F+ 
Sbjct: 301 VSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQ 360

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHL 391
           M + YG+ P++     LL   +  G L
Sbjct: 361 M-QLYGLEPNVVTLASLLSGCASVGAL 386


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/589 (37%), Positives = 333/589 (56%), Gaps = 4/589 (0%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
            +H   IKL       + N+L+  YG C  +  A  L + +  +D VSW S+++A+ Q N
Sbjct: 147 AVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGN 206

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
            P+  + +F  M   + + P+      ++ AC        G+ V +         D  + 
Sbjct: 207 CPEDALELFLKM-ERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLC 265

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           ++++DMY KCG  ++A+ +FD +  ++  SWT ML  YA+ G    A  +F   PV+ + 
Sbjct: 266 NAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIA 325

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            W  L+S   Q+    +A   F E++   +   D + L S + ACA    ++LG  IH  
Sbjct: 326 AWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVY 385

Query: 264 VIALGYE-SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           +   G   +C  IS ++VDMYAKC  +  A ++F  +  +DV  W+++I G   HG+ + 
Sbjct: 386 IKREGIVLNCHLIS-SLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKA 444

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L+ EM  A VKPN VTF  ++ ACSH GLV +GR  F  M   YG+ P ++HY C++
Sbjct: 445 AIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMV 504

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+L R+G L+EA  LI  M   P    W ALL AC  H N E+G   ++ LL L+P +  
Sbjct: 505 DILGRAGFLEEAMELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHG 564

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           + +LLSN+YA    W+ VS++RKLM   E+KKEPG S IE     H F  G+ +HPL   
Sbjct: 565 AIVLLSNIYAKTGRWEKVSELRKLMRDTELKKEPGCSSIEANGNVHEFLVGDNTHPLSSN 624

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKE-KERQLFWHSERLAVAYGLLKSVPGTVL 561
           I+  L E+  ++K  GY P+ S +L  +E+ + KE+ L  HSE+LA+A+GL+   P   +
Sbjct: 625 IYSKLEEIATKLKSVGYEPNKSHLLQLIEEDDLKEQALSLHSEKLAIAFGLVTLAPSQPI 684

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           RVVKNLR+CGDCH   K++SR+  R+I++RD  R+HHF+DG CSC D+W
Sbjct: 685 RVVKNLRICGDCHAFAKLVSRVYDRDILLRDRYRFHHFRDGHCSCMDYW 733



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 209/450 (46%), Gaps = 79/450 (17%)

Query: 15  RHQIALTV---------KTLHAQIIKLGLHQYGPLPNTLI---DAYGKCDLVQYAHHLLE 62
            HQI  T+         K +HA++++ GL  + P   + +    A      + YA +L +
Sbjct: 25  NHQILSTIDKCSSSKQLKEVHARMLRTGLF-FDPFSASKLFTASALSSFSTLDYARNLFD 83

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
           ++PQ +  +W +++ AY  ++ P ++  IF  +L   +  P+ F F  ++KA   L A+R
Sbjct: 84  QIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASR 143

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           +G  VH   +   F  D  + +SLV  Y  CG  + A  +F  I  K+ VSW +M+SA+A
Sbjct: 144 VGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFA 203

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           +    +DA+E+                               F++M RE V + + + + 
Sbjct: 204 QGNCPEDALEL-------------------------------FLKMERENV-MPNSVTMV 231

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            ++ ACA    LE G+ +   +   G +  L + NA++DMY KC  +  A+ +F  M  +
Sbjct: 232 GVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPER 291

Query: 303 DVVSWTSIIVGTA-------------------------------QHGQAEETLALYDEM- 330
           DV SWT ++ G A                               Q+G+ +E LA+++E+ 
Sbjct: 292 DVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQ 351

Query: 331 VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH 390
           +S   KP+EVT V  + AC+ +G +  G       I+  GI  +    + L+D+ ++ G 
Sbjct: 352 LSKIAKPDEVTLVSTLSACAQLGAIDLG-GWIHVYIKREGIVLNCHLISSLVDMYAKCGS 410

Query: 391 LDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           L++A  +  ++  E D   W+A+++    H
Sbjct: 411 LEKALEVFYSVE-ERDVYVWSAMIAGLGMH 439


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/601 (35%), Positives = 341/601 (56%), Gaps = 34/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CA+ +     + +H  +          L N+LI  Y KC  V  AH + ++M ++D 
Sbjct: 58  ITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDM 117

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S++  Y Q ++P + I +   ML   + +P+ F FASL+KA G+   + +G Q+HA
Sbjct: 118 VSWTSLIAGYAQNDMPAEAIGLLPGMLK-GRFKPNGFTFASLLKAAGAYADSGIGGQIHA 176

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V   + +D  V S+L+DMYA                               R G+   
Sbjct: 177 LAVKCDWHEDVYVGSALLDMYA-------------------------------RCGKMDM 205

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F++   +N   W AL+SG  +  +   A   F EM+R G +       SSI    A
Sbjct: 206 ATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATH-FTYSSIFSGLA 264

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LE GK +H  ++    +   F+ N ++DMYAK   +I A+ +F R+  KD+V+W S
Sbjct: 265 GIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNS 324

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           ++   AQ+G  +E ++ ++EM  +G+  N++TF+ ++ ACSH GLV +G+  F  MI++Y
Sbjct: 325 MLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACSHGGLVKEGKHYF-DMIKEY 383

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            + P ++HY  ++DLL R+G L+ A   I  MP EP    W ALL+AC+ H+N ++G   
Sbjct: 384 NLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFA 443

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A+H+  L P+D    +LL N+YAS   W   ++VRK+M    VKKEP  S++E G   H+
Sbjct: 444 ADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIGNSVHM 503

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F A + +HP  +EI+++  E+  ++++ GYVPD   VL  ++++E+E  L +HSE++A+A
Sbjct: 504 FVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALA 563

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + L++   G  +R++KN+R+CGDCH   K IS++ +REIVVRD  R+HHF +G CSC D+
Sbjct: 564 FALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIVVRDTNRFHHFSNGSCSCGDY 623

Query: 610 W 610
           W
Sbjct: 624 W 624



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 151/317 (47%), Gaps = 34/317 (10%)

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           +L P   V+ + + AC         +++H     S F  D  + +SL+ +Y KCG    A
Sbjct: 46  ELAPTPRVYHAFITACAQSKNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEA 105

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
             VFD ++ K+ VSWT++++ YA++    +A+                L+ G+++ R + 
Sbjct: 106 HKVFDKMRKKDMVSWTSLIAGYAQNDMPAEAI---------------GLLPGMLKGRFKP 150

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           + F                   +S++ A   +A   +G QIH L +   +   +++ +A+
Sbjct: 151 NGF-----------------TFASLLKAAGAYADSGIGGQIHALAVKCDWHEDVYVGSAL 193

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           +DMYA+C  +  A  +F ++  K+ VSW ++I G A+ G  E  L ++ EM   G +   
Sbjct: 194 LDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATH 253

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
            T+  +    + +G + +G+ +   M++      +    T +LD+ ++SG + +A  + +
Sbjct: 254 FTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLTAFVGNT-MLDMYAKSGSMIDARKVFE 312

Query: 400 AMPFEPDEPTWAALLSA 416
            +    D  TW ++L+A
Sbjct: 313 RV-LNKDLVTWNSMLTA 328


>gi|297819536|ref|XP_002877651.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323489|gb|EFH53910.1| hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1217

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 219/626 (34%), Positives = 348/626 (55%), Gaps = 42/626 (6%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           T++T+H++II   L     L   L+ AY     V  A  + +E+P+R+ +    ++ +Y 
Sbjct: 58  TLRTVHSRIISEDLRYNSSLGVKLMRAYASLKDVATARKVFDEIPERNVIIINVMIRSYV 117

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
                ++ I +F TM +   ++PDH+ F  ++KAC   G   +GK++H            
Sbjct: 118 NNGFYREGIQVFGTMCSC-HVKPDHYTFPCVLKACSCSGNIVIGKKIHGSATKVGLSSTL 176

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP-- 198
            V + LV MY KCG  + AR V D +  ++ VSW ++++ YA++ R  DA+E+  +    
Sbjct: 177 FVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVAGYAQNQRFDDALEVCREMESV 236

Query: 199 --------------------------VRNLFL---------WTALVSGLVQSRNEIDAFY 223
                                     V+++F          W  ++   +++   ++A  
Sbjct: 237 KISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVE 296

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            +  M  +G +  D + ++S++ AC + + L LGK+IHG +        L + NA++DMY
Sbjct: 297 LYSGMEADGFE-PDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMY 355

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           AKC  +  A+D+F  M+ +DVVSWT++I      G+  + +AL+ +M  +G+ P+ + FV
Sbjct: 356 AKCGCLDRARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKMQDSGLVPDSIAFV 415

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
             + ACSH GL+ +GR  FK M + Y ITP L+H  C++DLL R+G + EA   I+ MP 
Sbjct: 416 TTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYKFIQEMPM 475

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
           EP+E  W ALL AC+ H NT++G   A+ L  L PE    Y+LLSN+YA A  W+ V+ +
Sbjct: 476 EPNERVWGALLGACRVHSNTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNI 535

Query: 464 RKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDT 523
           R +M    +KK PG S +E  +  H F  G+ SHP   EI+  L  L  +MK  GYVPD+
Sbjct: 536 RNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSAEIYRELDVLVKKMKELGYVPDS 595

Query: 524 SSVLHDMEQKEKERQLFWHSERLAVAYGLLKSV---PGTVLRVVKNLRVCGDCHIVMKMI 580
            S LHD+E+++KE  L  HSE+LA+ + L+ +        +R+ KNLR+CGDCH+  K+I
Sbjct: 596 ESALHDVEEEDKETHLAVHSEKLAIVFALMNTEEEDSNNAIRITKNLRICGDCHVAAKLI 655

Query: 581 SRITKREIVVRDATRYHHFKDGKCSC 606
           S+IT REI++RD  R+H F+ G CSC
Sbjct: 656 SQITSREIIIRDTNRFHVFRFGVCSC 681


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/567 (38%), Positives = 337/567 (59%), Gaps = 33/567 (5%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           L++ Y K   +  A  L EEMP+ D + W+ ++  Y Q++  ++ + +F  M     + P
Sbjct: 278 LLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQ-TSVVP 336

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           ++F FAS+++AC S  +  LGKQ+H+C +      +  V ++++D+YAKC          
Sbjct: 337 NNFTFASVLQACASSVSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKC---------- 386

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
                                G  +++M++FE+ P RN   W  ++ G VQ  +   A  
Sbjct: 387 ---------------------GEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMN 425

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            F  M    +   + +  SS++ A A+ A LE G QIH L I   Y     ++N+++DMY
Sbjct: 426 LFTHMLEHDMQPTE-VTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVANSLIDMY 484

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           AKC  I  A+  F +M ++D VSW ++I G + HG + E L L+D M     KPN++TFV
Sbjct: 485 AKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTFV 544

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
           G++ ACS+ GL+ KG+  F+SM +DY I P ++HYTC++ LL R G  DEA  LI  + +
Sbjct: 545 GVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIAY 604

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
           +P    W ALL AC  H+  ++G   A H+L ++P D ++++LLSN+YA+A  W +V+ V
Sbjct: 605 QPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAFV 664

Query: 464 RKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDT 523
           RK M   +V+KEPG S++E     H F  G+TSHP    I  +L  L+ + +  GYVPD 
Sbjct: 665 RKYMQKKKVRKEPGLSWVENQGVVHYFSVGDTSHPDIKLICAMLEWLNKKTRDAGYVPDC 724

Query: 524 SSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRI 583
           ++VL D++  EKER L+ HSERLA+AYGL+++     +R++KNLR+C DCH VMK+IS++
Sbjct: 725 NAVLLDVQDDEKERHLWVHSERLALAYGLIRTPLSCSIRIIKNLRICIDCHTVMKLISKV 784

Query: 584 TKREIVVRDATRYHHFKDGKCSCNDFW 610
            +REIV+RD  R+HHF+ G CSC D+W
Sbjct: 785 VQREIVIRDINRFHHFRHGVCSCGDYW 811



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 204/401 (50%), Gaps = 43/401 (10%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           TLHA + KLG H    +   LIDAY     V  A H+ +++  +D VSW  ++  Y +  
Sbjct: 157 TLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENC 216

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
             ++++ +F+ M  +   +P++F  +  +K+C  L A  +GK VH C +   +  D  V 
Sbjct: 217 FYEESLQLFNQMRIM-GYKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVG 275

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
            +L+++YAK G   +A+ +F+ +   + + W+ M++ YA+S R K+A+++          
Sbjct: 276 IALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDL---------- 325

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
                                F+ MR+  V + +    +S++ ACA+   L+LGKQIH  
Sbjct: 326 ---------------------FLRMRQTSV-VPNNFTFASVLQACASSVSLDLGKQIHSC 363

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           V+  G  S +F+SNAI+D+YAKC +I  +  +F  +  ++ V+W +IIVG  Q G  E  
Sbjct: 364 VLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERA 423

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL----FKSMIEDYGITPSLQHYT 379
           + L+  M+   ++P EVT+  ++ A + +  +  G ++     K+M     +  +     
Sbjct: 424 MNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMYNKDTVVAN----- 478

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            L+D+ ++ G +++A      M  + DE +W A++     H
Sbjct: 479 SLIDMYAKCGRINDARLTFDKMN-KRDEVSWNAMICGYSMH 518



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 171/355 (48%), Gaps = 30/355 (8%)

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
           +L+ Y +S   +DA ++F++ P  N   +  L  G  +      A +  + + +EG + V
Sbjct: 76  LLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHE-V 134

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           +P V ++++    +  +  L   +H  V  LG+ +  F+  A++D Y+   ++  A+ +F
Sbjct: 135 NPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVF 194

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
             +  KD+VSWT ++   A++   EE+L L+++M   G KPN  T  G + +C  +    
Sbjct: 195 DDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFN 254

Query: 357 KGRKLFKSMIE---DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
            G+ +    ++   D+ +   +     LL+L ++SG + +A+ L + MP + D   W+ +
Sbjct: 255 VGKSVHGCALKGCYDHDLFVGIA----LLELYAKSGEIIDAQRLFEEMP-KTDLIPWSLM 309

Query: 414 LSACKHHRNTEMGTRVANHLLSLKPED--PSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
           ++    +  ++      +  L ++     P+++   S + A A+    VS        ++
Sbjct: 310 IA---RYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACAS---SVS--------LD 355

Query: 472 VKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSV 526
           + K+     ++FG  S++F     S+ + D ++    E++  MK    +PD + V
Sbjct: 356 LGKQIHSCVLKFGLNSNVF----VSNAIMD-VYAKCGEIENSMKLFEELPDRNDV 405



 Score = 55.5 bits (132), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 1/101 (0%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H+  IK   ++   + N+LID Y KC  +  A    ++M +RD VSW +++  Y+   +
Sbjct: 461 IHSLTIKTMYNKDTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGM 520

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
             + +++F  M   D  +P+   F  ++ AC + G    G+
Sbjct: 521 SMEALNLFDMMQHTD-CKPNKLTFVGVLSACSNAGLLYKGQ 560


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/589 (37%), Positives = 340/589 (57%), Gaps = 36/589 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA I          L N +++ Y KC  ++ A  L ++MP +D VSW  +++ Y+Q+
Sbjct: 125 RAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQS 184

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV- 141
               + +++F  ML L   QP+ F  +SL+KA G+  +   G+Q+HA F L    D +V 
Sbjct: 185 GQASEALALFPKMLHLG-FQPNEFTLSSLLKASGTGPSDHHGRQLHA-FSLKYGYDMNVH 242

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V SSL+DMYA+                     W  M          ++A  IF     +N
Sbjct: 243 VGSSLLDMYAR---------------------WAHM----------REAKVIFNSLAAKN 271

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           +  W AL++G  +          F++M R+G +       SS+  ACA+   LE GK +H
Sbjct: 272 VVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTH-FTYSSVFTACASSGSLEQGKWVH 330

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             VI  G +   +I N ++DMYAK   I  AK +F R+ ++D+VSW SII G AQHG   
Sbjct: 331 AHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGA 390

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L L+++M+ A V+PNE+TF+ ++ ACSH GL+ +G+  F+ +++ + I   + H+  +
Sbjct: 391 EALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFE-LMKKHKIEAQVAHHVTV 449

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL R+G L+EA   I+ MP +P    W ALL +C+ H+N ++G   A  +  L P D 
Sbjct: 450 VDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHDS 509

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
             ++LLSN+YASA      +KVRK+M    VKKEP  S++E     H+F A + SHP+++
Sbjct: 510 GPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMRE 569

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           EI  +  ++  ++K  GYVPDTS VL  M Q+++E +L +HSE+LA+A+ +LK+ PG  +
Sbjct: 570 EIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTI 629

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+ KN+R+CGDCH   K  SR+  REI+VRD  R+HHF  G CSC D+W
Sbjct: 630 RIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 678



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 173/352 (49%), Gaps = 35/352 (9%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           L+P+  +++ ++  C  L   + G+ +HA    S F DD V+ + +++MYAKCG    A+
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            +FD +  K+ VSWT ++S Y++SG+  +A+ +F +                        
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPK------------------------ 196

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
                  M   G    +   LSS++ A         G+Q+H   +  GY+  + + ++++
Sbjct: 197 -------MLHLGFQ-PNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLL 248

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           DMYA+ + +  AK IF  +  K+VVSW ++I G A+ G+ E  + L+ +M+  G +P   
Sbjct: 249 DMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHF 308

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           T+  +  AC+  G + +G+ +   +I+  G  P       L+D+ ++SG + +A+ + + 
Sbjct: 309 TYSSVFTACASSGSLEQGKWVHAHVIKSGG-QPIAYIGNTLIDMYAKSGSIKDAKKVFRR 367

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           +  + D  +W +++S    H       ++   +L  K + P+    LS + A
Sbjct: 368 L-VKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQ-PNEITFLSVLTA 417



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/263 (28%), Positives = 126/263 (47%), Gaps = 39/263 (14%)

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           S ++  C     L+ G+ IH  + +  +E  L + N I++MYAKC  +  A+D+F +M  
Sbjct: 109 SKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPT 168

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           KD+VSWT +I G +Q GQA E LAL+ +M+  G +PNE T   L+ A         GR+L
Sbjct: 169 KDMVSWTVLISGYSQSGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSDHHGRQL 228

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP------------------- 402
               ++ YG   ++   + LLD+ +R  H+ EA+ +  ++                    
Sbjct: 229 HAFSLK-YGYDMNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGE 287

Query: 403 ---------------FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYI-- 445
                          FEP   T++++ +AC    + E G  V  H++    + P +YI  
Sbjct: 288 GEHVMRLFLQMLRQGFEPTHFTYSSVFTACASSGSLEQGKWVHAHVIKSGGQ-PIAYIGN 346

Query: 446 LLSNVYASAAMWQHVSKV-RKLM 467
            L ++YA +   +   KV R+L+
Sbjct: 347 TLIDMYAKSGSIKDAKKVFRRLV 369


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/584 (38%), Positives = 335/584 (57%), Gaps = 3/584 (0%)

Query: 27  AQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQ 86
           A I +LGL     + N L+D Y KC  +  A  L +E   R+ V + +IL+ Y +  L +
Sbjct: 256 AYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAR 315

Query: 87  KTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSL 146
           + ++I   ML     +PD     S + A   L     GK  H   + +     D + + +
Sbjct: 316 EALAILDEMLQQGP-RPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLEGWDSIGNVI 374

Query: 147 VDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWT 206
           +DMY KCG P  A  VFD +  K  VSW ++ + + R+G  + A E+F Q P RN   W 
Sbjct: 375 IDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWN 434

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
            ++SGLVQ     DA   F EM+ EG+   D + +  I  AC      EL K +H  +  
Sbjct: 435 TMISGLVQKSLFEDAIELFREMQGEGIK-ADRVTMMGIASACGYLGAPELAKWVHTYIEK 493

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
            G    + ++ A+VDM+A+C D  +A  +F +M  +DV +WT+ I   A  G  E    L
Sbjct: 494 NGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGL 553

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
           +++M+  GVKP+ V FV ++ ACSH G V +G  +F S++ED+GI+P ++HY C++DLL 
Sbjct: 554 FNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIF-SLMEDHGISPQIEHYGCMVDLLG 612

Query: 387 RSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYIL 446
           R+G L EA +LIK+MP EP++  W +LL+AC+ H+N EM T  A  +  L P+    ++L
Sbjct: 613 RAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVL 672

Query: 447 LSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFEL 506
           LSN+YASA  W  V++VR  +    V+K PG S ++     H F +G+ SHP    I  +
Sbjct: 673 LSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALM 732

Query: 507 LTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKN 566
           L E++      G++PD S+VL D++++EKE  L  HSE+LA+A+GL+ +     +RVVKN
Sbjct: 733 LQEMNCRFSDAGHIPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKN 792

Query: 567 LRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           LR+C DCH   KM S I  REI+VRD  R+H F+ G CSC D+W
Sbjct: 793 LRMCSDCHSFAKMASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 836



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 124/480 (25%), Positives = 210/480 (43%), Gaps = 72/480 (15%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  ++K+GL +   + N LI  Y +C  + + H + E M +R+ VSW S++  Y + + 
Sbjct: 153 VHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDR 212

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P++ +S+F  M+    ++P       ++ AC  L    +G++V A         + V+ +
Sbjct: 213 PKEAVSLFFEMVEAG-IRPSSVTMVCVISACAKLRDLDMGERVCAYIGELGLKLNKVMVN 271

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +LVDMY KCG  + A+ +FD    +N V +  +LS YAR G  ++A+ I +         
Sbjct: 272 ALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILD--------- 322

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                                 EM ++G    D + + S + A A    L  GK  HG V
Sbjct: 323 ----------------------EMLQQGPR-PDRVTMLSAISASAQLVDLFYGKVCHGYV 359

Query: 265 IALGYESCLFISNAIVDMYAKC-------------------------------SDIIAAK 293
           I  G E    I N I+DMY KC                                D+ +A 
Sbjct: 360 IRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAW 419

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
           ++F ++  ++ V W ++I G  Q    E+ + L+ EM   G+K + VT +G+  AC ++G
Sbjct: 420 EVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLG 479

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
              +  K   + IE  GI   ++  T L+D+ +R G    A  +   M  E D   W A 
Sbjct: 480 -APELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMT-ERDVSAWTAA 537

Query: 414 LSACKHHRNTEMGTRVANHLL--SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
           +       N E  T + N +L   +KP+     +L   V  + +    V +   + S+ME
Sbjct: 538 IGTMAMEGNGEGATGLFNQMLIQGVKPD----VVLFVQVLTACSHGGQVEQGLHIFSLME 593



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 161/339 (47%), Gaps = 41/339 (12%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKC------DLVQYAHHLLEEMPQRDHVSWA-- 73
           +K LH QI K GL Q       L++A  +       D  + A  L +E  + D   +   
Sbjct: 41  LKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLN 100

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           S++  Y+ A L ++ I ++  ML L  + P+H+ F  ++  C  + A   G QVH   V 
Sbjct: 101 SLIRGYSSAGLGREAILLYVRMLVLG-VTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
               +D  +++ L+  YA+CG  ++   VF+ +  +N VSWT+++  YAR  R K+A+ +
Sbjct: 160 MGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSL 219

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
                                          F EM   G+     + +  ++ ACA    
Sbjct: 220 -------------------------------FFEMVEAGIR-PSSVTMVCVISACAKLRD 247

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L++G+++   +  LG +    + NA+VDMY KC  I AAK +F     +++V + +I+  
Sbjct: 248 LDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSN 307

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
            A+ G A E LA+ DEM+  G +P+ VT +  I A + +
Sbjct: 308 YARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQL 346



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 134/275 (48%), Gaps = 14/275 (5%)

Query: 188 KDAMEIFEQAPVRN---LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD---IVDPLVL 241
           + A E+F++  VR+   LF+  +L+ G   +    +A   ++ M   GV       P VL
Sbjct: 80  RKAFELFKE-DVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVL 138

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           S     C   A    G Q+HG V+ +G E  +FI N ++  YA+C  +     +F  M  
Sbjct: 139 S----GCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSE 194

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           ++VVSWTS+I G A+  + +E ++L+ EMV AG++P+ VT V +I AC+ +  +  G ++
Sbjct: 195 RNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERV 254

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
             + I + G+  +      L+D+  + G +D A+ L      + +   +  +LS      
Sbjct: 255 C-AYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDEC-VDRNLVLYNTILSNYARQG 312

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
                  + + +L   P  P    +LS + ASA +
Sbjct: 313 LAREALAILDEMLQQGPR-PDRVTMLSAISASAQL 346



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 95/211 (45%), Gaps = 32/211 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKC----------DL------------------- 53
           K  H  +I+ GL  +  + N +ID Y KC          DL                   
Sbjct: 353 KVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRN 412

Query: 54  --VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
             V+ A  +  ++P+R+ V W ++++   Q +L +  I +F  M   + ++ D      +
Sbjct: 413 GDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQG-EGIKADRVTMMGI 471

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
             ACG LGA  L K VH     +    D  + ++LVDM+A+CG P +A  VF+ +  ++ 
Sbjct: 472 ASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDV 531

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +WTA +   A  G  + A  +F Q  ++ +
Sbjct: 532 SAWTAAIGTMAMEGNGEGATGLFNQMLIQGV 562


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/588 (37%), Positives = 342/588 (58%), Gaps = 32/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LH   ++        +   L+D Y KC  + YA  + + M  R+ VSW++++  Y  +
Sbjct: 230 KALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVAS 289

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           +  ++ + +F  M+  D + P      S+++AC  L     G+++H C+++         
Sbjct: 290 DCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLH-CYII--------- 339

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
                    K G      +V D I L N+     +LS YA+ G   DA+  F++   ++ 
Sbjct: 340 ---------KLG------SVLD-ILLGNT-----LLSMYAKCGVIDDAIRFFDEMNPKDS 378

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             ++A+VSG VQ+ N   A   F  M+  G+D  D   +  ++ AC++ A L+ G   HG
Sbjct: 379 VSFSAIVSGCVQNGNAAVALSIFRMMQLSGID-PDLTTMLGVLPACSHLAALQHGFCSHG 437

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +I  G+ +   I NA++DMY+KC  I  A+++F RM R D+VSW ++I+G   HG   E
Sbjct: 438 YLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGME 497

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L+ ++++ G+KP+++TF+ L+ +CSH GLV +GR  F +M  D+ I P ++H  C++
Sbjct: 498 ALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMV 557

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+L R+G +DEA + I+ MPFEPD   W+ALLSAC+ H+N E+G  V+  + SL PE   
Sbjct: 558 DILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTG 617

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +++LLSN+Y++A  W   + +R       +KK PG S+IE     H F  G+ SH    +
Sbjct: 618 NFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQ 677

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I   L EL  EMKR GY  + S V  D+E++EKE+ L +HSE+LA+A+G+L    G  + 
Sbjct: 678 INRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPIL 737

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V KNLRVCGDCH  +K ++ ITKREI VRDA R+HHFK+G C+C DFW
Sbjct: 738 VTKNLRVCGDCHTAIKFMTLITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 112/459 (24%), Positives = 211/459 (45%), Gaps = 39/459 (8%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           ++YLH L  C + +     K +H   +K   +    + + L   Y  C+ V  A  L +E
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           +P    + W  I+ AY         I ++ +ML L  ++P+ + +  ++KAC  L A   
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLAIED 127

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G ++H+   +     D  V ++LVD YAKCG+   A+ +F S+  ++ V+W AM++  + 
Sbjct: 128 GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            G   DA+++  Q     +   ++ + G++ +  E  A                      
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKA---------------------- 225

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
                     L  GK +HG  +   +++ + +   ++DMYAKC  ++ A+ IF  M  ++
Sbjct: 226 ----------LGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRN 275

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMV-SAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
            VSW+++I G       +E L L+D+M+    + P  VT   ++ AC+ +  + +GRKL 
Sbjct: 276 EVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLH 335

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
             +I+   +   L   T LL + ++ G +D+A      M    D  +++A++S C  + N
Sbjct: 336 CYIIKLGSVLDILLGNT-LLSMYAKCGVIDDAIRFFDEMN-PKDSVSFSAIVSGCVQNGN 393

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASA--AMWQH 459
             +   +   ++ L   DP    +L  + A +  A  QH
Sbjct: 394 AAVALSIF-RMMQLSGIDPDLTTMLGVLPACSHLAALQH 431



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 155/362 (42%), Gaps = 41/362 (11%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           +  L++AC    +    K++H  F+ +    D  V   L  +Y  C     AR +FD I 
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
             + + W  ++ AYA +G        F+ A                     ID ++S + 
Sbjct: 71  NPSVILWNQIIRAYAWNGP-------FDGA---------------------IDLYHSMLH 102

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           +         P VL     AC+    +E G +IH      G ES +F+  A+VD YAKC 
Sbjct: 103 LGVRPNKYTYPFVLK----ACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCG 158

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            ++ A+ +F  M  +DVV+W ++I G + +G  ++ + L  +M   G+ PN  T VG++ 
Sbjct: 159 ILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLP 218

Query: 348 ACSHVGLVGKGRKLFKSMIE---DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE 404
                  +G G+ L    +    D G+       T LLD+ ++   L  A  +   M   
Sbjct: 219 TVGEAKALGHGKALHGYCVRRSFDNGVVVG----TGLLDMYAKCQCLLYARKIFDVMGVR 274

Query: 405 PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVR 464
            +E +W+A++         +    + + ++     DP+  + L +V  + A    +S+ R
Sbjct: 275 -NEVSWSAMIGGYVASDCMKEALELFDQMILKDAMDPTP-VTLGSVLRACAKLTDLSRGR 332

Query: 465 KL 466
           KL
Sbjct: 333 KL 334



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 84/298 (28%), Positives = 134/298 (44%), Gaps = 37/298 (12%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR CA+       + LH  IIKLG      L NTL+  Y KC ++  A    +EM  +D 
Sbjct: 319 LRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDS 378

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS+++I++   Q       +SIF  M+ L  + PD      ++ AC  L A + G   H 
Sbjct: 379 VSFSAIVSGCVQNGNAAVALSIFR-MMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHG 437

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             ++  F  D ++ ++L+DMY+KCG  + AR VF+ +   + VSW AM+  Y   G   +
Sbjct: 438 YLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGME 497

Query: 190 AMEIFEQAPVRNL---------FLWTALVSGLV-QSRNEIDAF---YSFIEMRREGVDIV 236
           A+ +F       L          L +   SGLV + R   DA    +S +      + +V
Sbjct: 498 ALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMV 557

Query: 237 DPL-----------------------VLSSIVGACANFAVLELGKQIHGLVIALGYES 271
           D L                       + S+++ AC     +ELG+++   + +LG ES
Sbjct: 558 DILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPES 615


>gi|449458990|ref|XP_004147229.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Cucumis sativus]
          Length = 667

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 223/573 (38%), Positives = 338/573 (58%), Gaps = 17/573 (2%)

Query: 42  NTLIDAYGK-CDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDK 100
           NT++  Y K    V+ AH L +++P+ D VS+  +L  Y ++   +  ++ F+ M   D 
Sbjct: 108 NTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSYGVKAALAFFNKMPVKD- 166

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
                   AS              ++    F + P   + V  S+++  Y + G    A 
Sbjct: 167 -------IASWNTLISGFAQNGQMQKAFDLFSVMPE-KNGVSWSAMISGYVEHGDLEAAE 218

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ---SRN 217
            ++ ++ +K+ V  TAML+ Y + G+ + A  IF++  V+NL  W ++++G V+   + +
Sbjct: 219 ELYKNVGMKSVVVETAMLTGYMKFGKVELAERIFQRMAVKNLVTWNSMIAGYVENCRAED 278

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
            +  F + IE R       +PL LSS++  C+N + L LG+Q+H LV             
Sbjct: 279 GLKVFKTMIESRVRP----NPLSLSSVLLGCSNLSALPLGRQMHQLVSKSPLSKDTTACT 334

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           +++ MY KC D+ +A  +F  M RKDV++W ++I G AQHG   + L L+D+M +  +KP
Sbjct: 335 SLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQHGAGRKALHLFDKMRNGTMKP 394

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           + +TFV +I AC+H G V  G + FKSM +++GI     HYTC++DLL R+G LDEA +L
Sbjct: 395 DWITFVAVILACNHAGFVDLGVQYFKSMKKEFGIEAKPVHYTCVIDLLGRAGRLDEAVSL 454

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           IK MPF P    +  LL AC+ H+N ++    A +LL+L P   + Y+ L+N+YA+   W
Sbjct: 455 IKEMPFTPHAAIYGTLLGACRIHKNLDLAEFAARNLLNLDPTSATGYVQLANIYAATNKW 514

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
             V+KVRK+M    V K PGYS+IE    +H F + +  HP    I + L ELD +MK  
Sbjct: 515 DQVAKVRKMMKEHNVVKIPGYSWIEIKSVTHEFRSSDRLHPELTSIHKKLNELDGKMKLA 574

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GYVPD    LHD+E++ KE+ L WHSE+LA+A+GL+K+ PGT +RV KNLRVCGDCH  +
Sbjct: 575 GYVPDLEFALHDVEEEHKEKLLLWHSEKLAIAFGLMKTAPGTPIRVFKNLRVCGDCHRAI 634

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K IS I KREI+VRD TR+HHF++G CSC D+W
Sbjct: 635 KFISAIEKREIIVRDTTRFHHFRNGFCSCGDYW 667



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 140/296 (47%), Gaps = 45/296 (15%)

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYAR-SGRKKDAMEIFE--------------------- 195
           +AR VF+ + ++ +V+W  MLS Y + +G+ K+A E+F+                     
Sbjct: 91  SARNVFEKMSVRTTVTWNTMLSGYTKVAGKVKEAHELFDKIPEPDSVSYNIMLVCYLRSY 150

Query: 196 ----------QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM-RREGVDIVDPLVLSSI 244
                     + PV+++  W  L+SG  Q+     AF  F  M  + GV        S++
Sbjct: 151 GVKAALAFFNKMPVKDIASWNTLISGFAQNGQMQKAFDLFSVMPEKNGVS------WSAM 204

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           +        LE  ++++  V   G +S + +  A++  Y K   +  A+ IF RM  K++
Sbjct: 205 ISGYVEHGDLEAAEELYKNV---GMKSVV-VETAMLTGYMKFGKVELAERIFQRMAVKNL 260

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           V+W S+I G  ++ +AE+ L ++  M+ + V+PN ++   ++  CS++  +  GR++ + 
Sbjct: 261 VTWNSMIAGYVENCRAEDGLKVFKTMIESRVRPNPLSLSSVLLGCSNLSALPLGRQMHQ- 319

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           ++    ++      T L+ +  + G LD A  L   MP   D  TW A++S    H
Sbjct: 320 LVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMP-RKDVITWNAMISGYAQH 374



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 1/104 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  + K  L +      +LI  Y KC  +  A  L  EMP++D ++W ++++ Y Q 
Sbjct: 315 RQMHQLVSKSPLSKDTTACTSLISMYCKCGDLDSAWKLFLEMPRKDVITWNAMISGYAQH 374

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
              +K + +F  M     ++PD   F +++ AC   G   LG Q
Sbjct: 375 GAGRKALHLFDKMRN-GTMKPDWITFVAVILACNHAGFVDLGVQ 417


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 233/623 (37%), Positives = 352/623 (56%), Gaps = 55/623 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL-----------PQKTIS 90
           N L+  Y K  ++  A  + ++MP+R+ VSW S++  Y Q  L           P+K + 
Sbjct: 82  NGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVV 141

Query: 91  IFSTMLA-------LDKLQP--DHFVFASLVKACGSLGA-TRLGKQVHACFVLSPFCDDD 140
            ++ ML        +D+ +   D      +V +   +G     G+   A  +       +
Sbjct: 142 SWTVMLGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRN 201

Query: 141 VVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
           VV  +S++  YA     + AR +F+ +  KN V+WTAML  Y RSGR  +A E+F+  PV
Sbjct: 202 VVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPV 261

Query: 200 ----------------------RNLF---------LWTALVSGLVQSRNEIDAFYSFIEM 228
                                 R +F          W+AL+    +   E++A   F  M
Sbjct: 262 KPVAACNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLM 321

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
           +REGV    P ++ SI+  C + A L+ G+Q+H  ++   ++  +++S+ ++ MY KC D
Sbjct: 322 QREGVRPNFPSII-SILSVCGSLASLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGD 380

Query: 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
           ++  K +F R   KD+V W SII G AQHG  E+ L ++ EM S+G  P+E+TF+G++ A
Sbjct: 381 LVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSA 440

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           C + G V +G ++F+SM   Y +    +HY C++DLL R+G L+EA NLI+ MP E D  
Sbjct: 441 CGYTGKVKEGLEIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAI 500

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
            W ALLSAC+ H+N ++    A  LL L+P     YILLSN+YAS + W+ V+++RK M 
Sbjct: 501 VWGALLSACRTHKNLDLAEIAAKKLLQLEPSSAGPYILLSNLYASQSRWKDVAELRKTMR 560

Query: 469 VMEVKKEPGYSYIEFGKGSHIFY-AGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
              V K PG S+IE     H+F   G  SHP  + I + L +L A ++  GY PD S V+
Sbjct: 561 ARNVSKSPGCSWIEVDNKVHMFTGGGSASHPEHEMIMKKLEKLGASLREAGYCPDGSFVM 620

Query: 528 HDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
           HD+++++K   L  HSE++AVAYGLLK   G  +RV+KNLRVCGDCH  +K+I+++T RE
Sbjct: 621 HDVDEEDKVHSLRHHSEKMAVAYGLLKVPVGKPIRVMKNLRVCGDCHSAIKLIAQVTGRE 680

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           I++RDA R+HHFKDG CSC DFW
Sbjct: 681 IILRDANRFHHFKDGLCSCRDFW 703



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 123/272 (45%), Gaps = 18/272 (6%)

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
           S F     +    +  +A+ G  + AR +FD ++ K   SW A+++ Y  + R  +A ++
Sbjct: 10  SYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKL 69

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
           F++ P RN   W  LVSG V++    +A   F +M    V     +V   +     + A 
Sbjct: 70  FDKMPERNTISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAE 129

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L   +     V++        I +  VD          A+ +F  +  KDVV+ T++I G
Sbjct: 130 LLFWRMPEKNVVSWTVMLGGLIEDGRVD---------EARRLFDMIPVKDVVASTNMIGG 180

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
               G+  E   ++DEM     + N V +  +I   +    V   RKLF+ M +   +T 
Sbjct: 181 LCSEGRLSEAREIFDEM----PQRNVVAWTSMISGYAMNNKVDVARKLFEVMPDKNEVT- 235

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP 405
               +T +L   +RSG ++EA  L KAMP +P
Sbjct: 236 ----WTAMLKGYTRSGRINEAAELFKAMPVKP 263


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 217/570 (38%), Positives = 335/570 (58%), Gaps = 37/570 (6%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           LI  Y     ++ A  L +E+P +D VSW ++++ Y +    ++ + +F  M+  + ++P
Sbjct: 206 LIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKEMMKTN-IRP 264

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D     ++V AC   G+  LG+QVH+      F  +  + +SL+D+Y+KCG    A  +F
Sbjct: 265 DESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLF 324

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           + +  K+ +SW  ++  Y      K+A+ +F+                            
Sbjct: 325 EGLLYKDVISWNTLIGGYTHMNLYKEALLLFQ---------------------------- 356

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN---AIV 280
              EM R G    D  +LS I+ ACA+   +++G+ IH + I    +S    S+   +++
Sbjct: 357 ---EMLRSGERPNDVTMLS-ILPACAHLGAIDIGRWIH-VYIDKRLKSATNASSLRTSLI 411

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           DMYAKC DI AA  +F  +  K + SW ++I G A HG+A+    ++  M   G++P+++
Sbjct: 412 DMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDI 471

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           TFVGL+ ACS  G++  GR +F++M +DY ITP L+HY C++DLL  SG   EAE +I  
Sbjct: 472 TFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINN 531

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           M  EPD   W +LL ACK   N E+G   A +L+ ++PE+P  Y+LLSN+YA+A  W  V
Sbjct: 532 MEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEV 591

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
           +K+R L++   +KK PG S IE     H F  G+  HP   EI+ +L E++  +++ G+V
Sbjct: 592 AKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFV 651

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           PDTS VL +ME++ KE  L  HSE+LA+A+GL+ + PGT L +VKNLRVC +CH   K+I
Sbjct: 652 PDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLI 711

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           S+I KREI+ RD TR+HHF+DG CSCND+W
Sbjct: 712 SKIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 122/447 (27%), Positives = 226/447 (50%), Gaps = 40/447 (8%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLID---AYGKCDLVQYAHHLLEEMPQRDHVSWASILT 77
           +++ +HAQ+IK GLH      + L++        D + YA  + E + + + + W ++  
Sbjct: 48  SLRLIHAQMIKTGLHNTNYALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFR 107

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
            +  ++ P   + ++  M++L  L P+ + F  L+K+C    A + G+Q+H   +   + 
Sbjct: 108 GHALSSDPVSALKLYVCMISLG-LLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYD 166

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D  V +SL+ +Y + G   +AR VFD    ++ VS+TA++  YA  G  + A ++F++ 
Sbjct: 167 LDLFVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEI 226

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           PV+++  W A++SG  ++ N  +A   F EM +  +   D   + ++V ACA    +ELG
Sbjct: 227 PVKDVVSWNAMISGYAETGNYKEALELFKEMMKTNIR-PDESTMVTVVSACAQSGSIELG 285

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           +Q+H  +   G+ S L I N+++D+Y+KC ++  A  +F  +  KDV+SW ++I G    
Sbjct: 286 RQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHM 345

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR-----------------K 360
              +E L L+ EM+ +G +PN+VT + ++ AC+H+G +  GR                  
Sbjct: 346 NLYKEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASS 405

Query: 361 LFKSMIEDYG---------------ITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---P 402
           L  S+I+ Y                +  SL  +  ++   +  G  D A ++   M    
Sbjct: 406 LRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIG 465

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRV 429
            EPD+ T+  LLSAC      ++G  +
Sbjct: 466 IEPDDITFVGLLSACSRSGMLDLGRHI 492



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 139/319 (43%), Gaps = 49/319 (15%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA+       + +H+ I   G      + N+L+D Y KC  ++ A  L E +  +D +SW
Sbjct: 276 CAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISW 335

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF- 131
            +++  Y   NL ++ + +F  ML   + +P+     S++ AC  LGA  +G+ +H    
Sbjct: 336 NTLIGGYTHMNLYKEALLLFQEMLRSGE-RPNDVTMLSILPACAHLGAIDIGRWIHVYID 394

Query: 132 -VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
             L    +   +++SL+DMYAKCG    A  VF+SI  K+  SW AM+  +A  GR   A
Sbjct: 395 KRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAA 454

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
            +IF +                               MR+ G++  D +    ++ AC+ 
Sbjct: 455 FDIFSR-------------------------------MRKIGIE-PDDITFVGLLSACSR 482

Query: 251 FAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK- 302
             +L+LG+ I       + +   L +  C+      +D+         A+++   M  + 
Sbjct: 483 SGMLDLGRHIFRTMTQDYKITPKLEHYGCM------IDLLGHSGLFKEAEEMINNMEMEP 536

Query: 303 DVVSWTSIIVGTAQHGQAE 321
           D V W S++      G  E
Sbjct: 537 DGVIWCSLLKACKIRGNVE 555


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 222/601 (36%), Positives = 341/601 (56%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA   +    + LH+ ++K+ +     +   L+D Y KCDL++ A      +P++D 
Sbjct: 366 LKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDL 425

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           ++W +I++ Y+Q     + +S+F  M   + +  +    ++++K+   L    + +QVH 
Sbjct: 426 IAWNAIISGYSQYWEDMEALSLFVEMHK-EGIGFNQTTLSTILKSTAGLQVVHVCRQVHG 484

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V S F  D  V +SL+D Y KC                                  +D
Sbjct: 485 LSVKSGFHSDIYVVNSLIDSYGKCS-------------------------------HVED 513

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  IFE+  + +L  +T++++   Q     +A   F+EM+   +   D  V SS++ ACA
Sbjct: 514 AERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELK-PDRFVCSSLLNACA 572

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           N +  E GKQ+H  ++  G+   +F  N++V+MYAKC  I  A   F  +  + +VSW++
Sbjct: 573 NLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSA 632

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G AQHG   + L L+++M+  GV PN +T V ++ AC+H GLV + +  F+SM E +
Sbjct: 633 MIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELF 692

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G  P  +HY C++DLL R+G ++EA  L+  MPFE +   W ALL A + H++ E+G R 
Sbjct: 693 GFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRA 752

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  L  L+PE   +++LL+N+YASA  W++V++VR+LM   +VKKEPG S+IE     + 
Sbjct: 753 AEMLFILEPEKSGTHVLLANIYASAGKWENVAEVRRLMRDSKVKKEPGMSWIEVKDKVYT 812

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F  G+ SH    EI+  L EL   M + GYVP     LHD+EQ EKE  L+ HSE+LAVA
Sbjct: 813 FLVGDRSHYRSQEIYAKLDELSDLMDKAGYVPMVEIDLHDVEQSEKELLLYHHSEKLAVA 872

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GL+ +  G  +RV KNLRVC DCH   K I +I  REI+VRD  R+HHFKDG CSC D+
Sbjct: 873 FGLIATPQGAPIRVKKNLRVCVDCHTAFKYICKIVSREIIVRDINRFHHFKDGSCSCGDY 932

Query: 610 W 610
           W
Sbjct: 933 W 933



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/392 (32%), Positives = 194/392 (49%), Gaps = 35/392 (8%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA I K GL     + N LI+ Y KC    YA  L++E  + D VSW+++++ Y Q  L
Sbjct: 78  IHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGL 137

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
               +  F  M  L  ++ + F F+S++KAC  +   R+GKQVH   V+S F  D  V +
Sbjct: 138 GGGALMAFHEMHLLG-VKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVAN 196

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +LV MYAKC    +++ +FD I                               P RN+  
Sbjct: 197 TLVVMYAKCDEFLDSKRLFDEI-------------------------------PERNVVS 225

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W AL S  VQ     +A   F EM   G+   +   LSS+V AC        GK IHG +
Sbjct: 226 WNALFSCYVQIDFCGEAVGLFYEMVLSGIK-PNEFSLSSMVNACTGLRDSSRGKIIHGYL 284

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           I LGY+   F +NA+VDMYAK  D+  A  +F ++++ D+VSW ++I G   H   E+ L
Sbjct: 285 IKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQAL 344

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            L  +M  +G+ PN  T    + AC+ +GL   GR+L  S+++   +   L     L+D+
Sbjct: 345 ELLGQMKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMK-MDMESDLFVSVGLVDM 403

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            S+   L++A      +P E D   W A++S 
Sbjct: 404 YSKCDLLEDARMAFNLLP-EKDLIAWNAIISG 434



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 203/413 (49%), Gaps = 37/413 (8%)

Query: 23  KTLHAQIIKLGLHQYGPL-PNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           K +H  +IKLG + + P   N L+D Y K   +  A  + E++ Q D VSW +++     
Sbjct: 278 KIIHGYLIKLG-YDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVL 336

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
               ++ + +   M     + P+ F  +S +KAC  +G   LG+Q+H+  +      D  
Sbjct: 337 HEHHEQALELLGQM-KRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDMESDLF 395

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V   LVDMY+KC L  +AR  F+ +                               P ++
Sbjct: 396 VSVGLVDMYSKCDLLEDARMAFNLL-------------------------------PEKD 424

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           L  W A++SG  Q   +++A   F+EM +EG+   +   LS+I+ + A   V+ + +Q+H
Sbjct: 425 LIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGF-NQTTLSTILKSTAGLQVVHVCRQVH 483

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           GL +  G+ S +++ N+++D Y KCS +  A+ IF      D+VS+TS+I   AQ+GQ E
Sbjct: 484 GLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGE 543

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L L+ EM    +KP+      L+ AC+++    +G++L   +++ YG    +     L
Sbjct: 544 EALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHILK-YGFVLDIFAGNSL 602

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           +++ ++ G +D+A      +  E    +W+A++     H +     ++ N +L
Sbjct: 603 VNMYAKCGSIDDAGRAFSELT-ERGIVSWSAMIGGLAQHGHGRQALQLFNQML 654



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 120/458 (26%), Positives = 215/458 (46%), Gaps = 66/458 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+  +     K +H  ++  G      + NTL+  Y KCD    +  L +E+P+R+ 
Sbjct: 164 LKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNV 223

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW ++ + Y Q +   + + +F  M+ L  ++P+ F  +S+V AC  L  +  GK +H 
Sbjct: 224 VSWNALFSCYVQIDFCGEAVGLFYEMV-LSGIKPNEFSLSSMVNACTGLRDSSRGKIIHG 282

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +   +  D    ++LVDMYAK G   +A +VF+ IK  + VSW A+++        + 
Sbjct: 283 YLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQ 342

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+E+  Q                               M+R G+   +   LSS + ACA
Sbjct: 343 ALELLGQ-------------------------------MKRSGI-CPNIFTLSSALKACA 370

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
              + ELG+Q+H  ++ +  ES LF+S  +VDMY+KC  +  A+  F  +  KD+++W +
Sbjct: 371 GMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNA 430

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK--------- 360
           II G +Q+ +  E L+L+ EM   G+  N+ T   ++ + + + +V   R+         
Sbjct: 431 IISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSG 490

Query: 361 ------LFKSMIEDYG---------------ITPSLQHYTCLLDLLSRSGHLDEAENL-- 397
                 +  S+I+ YG                   L  +T ++   ++ G  +EA  L  
Sbjct: 491 FHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFL 550

Query: 398 -IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
            ++ M  +PD    ++LL+AC +    E G ++  H+L
Sbjct: 551 EMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVHIL 588



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 194/407 (47%), Gaps = 44/407 (10%)

Query: 56  YAHHLLEE-MPQRDHVSWAS----ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFAS 110
           + HH  ++ + QR H+ +      I T    +  PQ T  +   ++      P    ++ 
Sbjct: 4   WRHHSFQKPLHQRLHLPFKPAPKLIQTVPQFSQDPQTTAIL--NLIDKGNFTPTSVSYSK 61

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN 170
           L+  C +  + R G Q+HA    S   DD  +++ L+++Y+KC               +N
Sbjct: 62  LLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKC---------------RN 106

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
                     YAR        ++ +++   +L  W+AL+SG  Q+     A  +F EM  
Sbjct: 107 F--------GYAR--------KLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHL 150

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290
            GV   +    SS++ AC+    L +GKQ+HG+V+  G+E  +F++N +V MYAKC + +
Sbjct: 151 LGVK-CNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFL 209

Query: 291 AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350
            +K +F  +  ++VVSW ++     Q     E + L+ EMV +G+KPNE +   ++ AC+
Sbjct: 210 DSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACT 269

Query: 351 HVGLVGKGRKLFKSMIE-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
            +    +G+ +   +I+  Y   P       L+D+ ++ G L +A ++ + +  +PD  +
Sbjct: 270 GLRDSSRGKIIHGYLIKLGYDWDPF--SANALVDMYAKVGDLADAISVFEKIK-QPDIVS 326

Query: 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           W A+++ C  H + E    +    +      P+ + L S + A A M
Sbjct: 327 WNAVIAGCVLHEHHEQALELLGQ-MKRSGICPNIFTLSSALKACAGM 372


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/588 (36%), Positives = 338/588 (57%), Gaps = 33/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HAQ +  GL     +  +LI  Y  C  ++ A  + + M  RD VSW  ++  Y + 
Sbjct: 279 KAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAEN 338

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +    +F+TM   + +QPD   +  ++ AC         +++H+   ++ F  D +V
Sbjct: 339 GNIEDAFGLFATMQE-EGIQPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGTDLLV 397

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LV MYAKC                               G  KDA ++F+  P R++
Sbjct: 398 STALVHMYAKC-------------------------------GAIKDARQVFDAMPRRDV 426

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W+A++   V++    +AF +F  M+R  ++  D +   +++ AC +   L++G +I+ 
Sbjct: 427 VSWSAMIGAYVENGYGTEAFETFHLMKRSNIE-PDGVTYINLLNACGHLGALDVGMEIYT 485

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             I     S + + NA++ M AK   +  A+ IF  M R+DV++W ++I G + HG A E
Sbjct: 486 QAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNARE 545

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L+D M+    +PN VTFVG++ ACS  G V +GR+ F  ++E  GI P+++ Y C++
Sbjct: 546 ALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMV 605

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G LDEAE LIK+MP +P    W++LL AC+ H N ++  R A   L + P D +
Sbjct: 606 DLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYDGA 665

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            Y+ LS++YA+A MW++V+KVRK+M    ++KE G ++IE     H F   + SHPL  E
Sbjct: 666 VYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEVAGKVHTFVVEDRSHPLVGE 725

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L  L   +KR GY+P T +VLHD+ +++KE  + +HSE+LA+AYG+L    GT +R
Sbjct: 726 IYAELARLMNAIKREGYIPITQNVLHDVGEQQKEEAISYHSEKLAIAYGVLSLPSGTPIR 785

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + KNLRVC DCH   K IS++T REI+ RDA+R+HHFKDG CSC D+W
Sbjct: 786 IYKNLRVCSDCHSASKFISKVTGREIIARDASRFHHFKDGVCSCGDYW 833



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 193/411 (46%), Gaps = 35/411 (8%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+   + C   + A   K +   II+ G        NTLI  Y  C  V  A  + + + 
Sbjct: 60  YVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVE 119

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            +  V+W +++  Y Q    ++  ++F  M+  + L+P    F S++ AC S      GK
Sbjct: 120 NKTVVTWNALIAGYAQVGHVKEAFALFRQMVD-EGLEPSIITFLSVLDACSSPAGLNWGK 178

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           +VHA  V + F  D  + ++LV MY K G  ++AR VFD + +++  ++  M+  YA+SG
Sbjct: 179 EVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSG 238

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             + A E+F +                               M++ G+   + +   SI+
Sbjct: 239 DWEKAFELFYR-------------------------------MQQVGLK-PNKISFLSIL 266

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
             C     L  GK +H   +  G    + ++ +++ MY  C  I  A+ +F  M+ +DVV
Sbjct: 267 DGCWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVV 326

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SWT +I G A++G  E+   L+  M   G++P+ +T++ ++ AC+    +   R++  S 
Sbjct: 327 SWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHAREI-HSQ 385

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           ++  G    L   T L+ + ++ G + +A  +  AMP   D  +W+A++ A
Sbjct: 386 VDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMP-RRDVVSWSAMIGA 435



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 183/400 (45%), Gaps = 35/400 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HAQ++  G      +   L+  Y K   +  A  + + +  RD  ++  ++  Y ++
Sbjct: 178 KEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKS 237

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +K   +F  M  +  L+P+   F S++  C +  A   GK VHA  + +   DD  V
Sbjct: 238 GDWEKAFELFYRMQQVG-LKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVDDIRV 296

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SL+ MY  CG    AR                                +F+   VR++
Sbjct: 297 ATSLIRMYTTCGSIEGAR-------------------------------RVFDNMKVRDV 325

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WT ++ G  ++ N  DAF  F  M+ EG+   D +    I+ ACA  A L   ++IH 
Sbjct: 326 VSWTVMIEGYAENGNIEDAFGLFATMQEEGIQ-PDRITYMHIMNACAISANLNHAREIHS 384

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            V   G+ + L +S A+V MYAKC  I  A+ +F  M R+DVVSW+++I    ++G   E
Sbjct: 385 QVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTE 444

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
               +  M  + ++P+ VT++ L+ AC H+G +  G +++   I+   +   +     L+
Sbjct: 445 AFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKA-DLVSHVPLGNALI 503

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
            + ++ G ++ A  +   M    D  TW A++     H N
Sbjct: 504 IMNAKHGSVERARYIFDTM-VRRDVITWNAMIGGYSLHGN 542



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 163/364 (44%), Gaps = 41/364 (11%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D   +  L + C  L    LGKQV    +      +    ++L+ +Y+ CG    AR +F
Sbjct: 56  DSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIF 115

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           DS++ K  V+W A+++ YA+ G  K+A  +F Q                           
Sbjct: 116 DSVENKTVVTWNALIAGYAQVGHVKEAFALFRQ--------------------------- 148

Query: 224 SFIEMRREGVDIVDPLVLS--SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
               M  EG   ++P +++  S++ AC++ A L  GK++H  V+  G+ S   I  A+V 
Sbjct: 149 ----MVDEG---LEPSIITFLSVLDACSSPAGLNWGKEVHAQVVTAGFVSDFRIGTALVS 201

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY K   +  A+ +F  +  +DV ++  ++ G A+ G  E+   L+  M   G+KPN+++
Sbjct: 202 MYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKIS 261

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+ ++  C     +  G+ +    + + G+   ++  T L+ + +  G ++ A  +   M
Sbjct: 262 FLSILDGCWTPEALAWGKAVHAQCM-NAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNM 320

Query: 402 PFEPDEPTWAALLSACKHHRNTE--MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
               D  +W  ++     + N E   G         ++P D  +Y+ + N  A +A   H
Sbjct: 321 KVR-DVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQP-DRITYMHIMNACAISANLNH 378

Query: 460 VSKV 463
             ++
Sbjct: 379 AREI 382



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 98/191 (51%), Gaps = 1/191 (0%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+H +  CA        + +H+Q+   G      +   L+  Y KC  ++ A  + + MP
Sbjct: 363 YMHIMNACAISANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMP 422

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +RD VSW++++ AY +     +    F  M     ++PD   + +L+ ACG LGA  +G 
Sbjct: 423 RRDVVSWSAMIGAYVENGYGTEAFETFHLM-KRSNIEPDGVTYINLLNACGHLGALDVGM 481

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           +++   + +       + ++L+ M AK G    AR +FD++  ++ ++W AM+  Y+  G
Sbjct: 482 EIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAMIGGYSLHG 541

Query: 186 RKKDAMEIFEQ 196
             ++A+ +F++
Sbjct: 542 NAREALYLFDR 552



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 44/171 (25%), Positives = 87/171 (50%), Gaps = 1/171 (0%)

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290
           EG + +D      +   C       LGKQ+   +I  G +  ++  N ++ +Y+ C ++ 
Sbjct: 50  EGGNHIDSRTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVT 109

Query: 291 AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350
            A+ IF  +  K VV+W ++I G AQ G  +E  AL+ +MV  G++P+ +TF+ ++ ACS
Sbjct: 110 EARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACS 169

Query: 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
               +  G+++   ++   G     +  T L+ +  + G +D+A  +   +
Sbjct: 170 SPAGLNWGKEVHAQVVTA-GFVSDFRIGTALVSMYVKGGSMDDARQVFDGL 219


>gi|359478499|ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 577

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/602 (37%), Positives = 340/602 (56%), Gaps = 42/602 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR CA    A   +  H QI+K+G      L   L+D Y K   ++ A  +   MP+RD 
Sbjct: 17  LRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMGMPRRDV 76

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+  ++++A ++    ++  ++F  M   +    +                         
Sbjct: 77  VANNAMISALSKHGYVEEARNLFDNMTERNSCSWN------------------------- 111

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                          S++  Y K G  N+AR +FD   +K+ VSW A++  Y +S +   
Sbjct: 112 ---------------SMITCYCKLGDINSARLMFDCNPVKDVVSWNAIIDGYCKSKQLVA 156

Query: 190 AMEIFE-QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           A E+F      RN   W  ++S  VQ      A   F +M+ E V   + + + S++ AC
Sbjct: 157 AQELFLLMGSARNSVTWNTMISAYVQCGEFGTAISMFQQMQSENVKPTE-VTMVSLLSAC 215

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A+   L++G+ IHG +     +  + + NA++DMY KC  + AA D+F  + RK++  W 
Sbjct: 216 AHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWN 275

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           SIIVG   +G+ EE +A +  M   G+KP+ VTFVG++  CSH GL+  G++ F  M+  
Sbjct: 276 SIIVGLGMNGRGEEAIAAFIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGV 335

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YG+ P ++HY C++DLL R+G+L EA  LI+AMP +P+     +LL AC+ H++T++G +
Sbjct: 336 YGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQ 395

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
           V   LL L P D  +Y+ LSN+YAS + W  V+  RKLM    V K PG S IE     H
Sbjct: 396 VTQQLLELDPCDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVH 455

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F AG+TSHP   +I   L E+  E+K +G+VP+T++VLHD+E++EKE  + +HSER+AV
Sbjct: 456 EFVAGDTSHPQFTQINAFLDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAV 515

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+GL+ + PG  +RVVKNLR C DCH  MK+IS   KREI+VRD  R+HHF++G CSCND
Sbjct: 516 AFGLMSTPPGKTIRVVKNLRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCND 575

Query: 609 FW 610
           +W
Sbjct: 576 YW 577



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 90/190 (47%), Gaps = 11/190 (5%)

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
            S I+ +CA     +LG+  H  ++ +G+E  + +   ++D YAK  D+  AK +F  M 
Sbjct: 13  FSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKVGDLKCAKRVFMGMP 72

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
           R+DVV+  ++I   ++HG  EE   L+D M     + N  ++  +I     +G +   R 
Sbjct: 73  RRDVVANNAMISALSKHGYVEEARNLFDNM----TERNSCSWNSMITCYCKLGDINSARL 128

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           +F     D      +  +  ++D   +S  L  A+ L   M    +  TW  ++SA  + 
Sbjct: 129 MF-----DCNPVKDVVSWNAIIDGYCKSKQLVAAQELFLLMGSARNSVTWNTMISA--YV 181

Query: 421 RNTEMGTRVA 430
           +  E GT ++
Sbjct: 182 QCGEFGTAIS 191


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 225/601 (37%), Positives = 342/601 (56%), Gaps = 37/601 (6%)

Query: 12  VCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVS 71
           V   H  AL  + LHA  +  G  +   + N ++D Y K D V     L +EMP+ D VS
Sbjct: 260 VVGLHDFALG-QQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVS 318

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
           +  ++++Y+QA+  + ++  F  M  +      +F FA+++    +L + ++G+Q+H C 
Sbjct: 319 YNVVISSYSQADQYEASLHFFREMQCMG-FDRRNFPFATMLSIAANLSSLQMGRQLH-CQ 376

Query: 132 VLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
            L    D  + V +SLVDMYAKC +   A  +F S+                        
Sbjct: 377 ALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSL------------------------ 412

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
                  P R    WTAL+SG VQ          F +MR   +   D    ++++ A A+
Sbjct: 413 -------PQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLR-ADQSTFATVLKASAS 464

Query: 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
           FA L LGKQ+H  +I  G    +F  + +VDMYAKC  I  A  +F  M  ++ VSW ++
Sbjct: 465 FASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNAL 524

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370
           I   A +G  E  +  + +M+ +G++P+ V+ +G++ ACSH G V +G + F++M   YG
Sbjct: 525 ISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYG 584

Query: 371 ITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVA 430
           ITP  +HY C+LDLL R+G   EAE L+  MPFEPDE  W+++L+AC+ H+N  +  R A
Sbjct: 585 ITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAA 644

Query: 431 NHLLSL-KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
             L S+ K  D ++Y+ +SN+YA+A  W+ V  V+K M    +KK P YS++E     H+
Sbjct: 645 EKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKKAMRERGIKKVPAYSWVEVNHKIHV 704

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F + + +HP  DEI   + EL AE++R GY PDTSSV+ D++++ K   L +HSERLAVA
Sbjct: 705 FSSNDQTHPNGDEIVRKINELTAEIEREGYKPDTSSVVQDVDEQMKIESLKYHSERLAVA 764

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + L+ +  G  + V+KNLR C DCH  +K+IS+I KREI VRD +R+HHF +G CSC D+
Sbjct: 765 FALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKREITVRDTSRFHHFSEGVCSCGDY 824

Query: 610 W 610
           W
Sbjct: 825 W 825



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/384 (22%), Positives = 156/384 (40%), Gaps = 35/384 (9%)

Query: 35  HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFST 94
           H+     NT+I  + K   V  A  L + MP R  V+W  ++  Y + +   +   +F  
Sbjct: 76  HKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQ 135

Query: 95  MLALDKLQ-PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC 153
           M        PDH  F +L+  C          QVHA  V                   K 
Sbjct: 136 MCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAV-------------------KL 176

Query: 154 GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLV 213
           G   N      ++ LK          +Y    R   A  +FE+ P ++   +  L++G  
Sbjct: 177 GFDTNPFLTVSNVLLK----------SYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYE 226

Query: 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
           +     ++ + F++MR+ G    D    S ++ A        LG+Q+H L +  G+    
Sbjct: 227 KDGLYTESIHLFLKMRQSGHQPSD-FTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDA 285

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
            + N I+D Y+K   ++  + +F  M   D VS+  +I   +Q  Q E +L  + EM   
Sbjct: 286 SVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCM 345

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY-TCLLDLLSRSGHLD 392
           G       F  ++   +++  +  GR+L    +       S+ H    L+D+ ++    +
Sbjct: 346 GFDRRNFPFATMLSIAANLSSLQMGRQLHCQAL--LATADSILHVGNSLVDMYAKCEMFE 403

Query: 393 EAENLIKAMPFEPDEPTWAALLSA 416
           EAE + K++P +    +W AL+S 
Sbjct: 404 EAELIFKSLP-QRTTVSWTALISG 426



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/295 (23%), Positives = 143/295 (48%), Gaps = 5/295 (1%)

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           ++V A  + + F  D    + +V+   + G  + AR V+D +  KN+VS   M+S + ++
Sbjct: 33  RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM-RREGVDIVDPLVLSS 243
           G    A ++F+  P R +  WT L+    ++ +  +AF  F +M R     + D +  ++
Sbjct: 93  GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTT 152

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLF--ISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           ++  C +        Q+H   + LG+++  F  +SN ++  Y +   +  A  +F  +  
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE 212

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           KD V++ ++I G  + G   E++ L+ +M  +G +P++ TF G++ A   +     G++L
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFALGQQL 272

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             ++    G +        +LD  S+   + E   L   MP E D  ++  ++S+
Sbjct: 273 -HALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMP-ELDFVSYNVVISS 325



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 81/175 (46%), Gaps = 7/175 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+  A     L  K LHA II+ G  +     + L+D Y KC  ++ A  + EEMP R+ 
Sbjct: 459 LKASASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNA 518

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW ++++A+      +  I  F+ M+    LQPD      ++ AC   G    G +   
Sbjct: 519 VSWNALISAHADNGDGEAAIGAFAKMIE-SGLQPDSVSILGVLTACSHCGFVEQGTEYFQ 577

Query: 130 CFVLSPFCDDDVVK---SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
              +SP       K   + ++D+  + G    A  + D +  + + + W+++L+A
Sbjct: 578 --AMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNA 630


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 216/611 (35%), Positives = 342/611 (55%), Gaps = 6/611 (0%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S +L   + C     A  VK +H   I+ G+     L N LI AYGKC  V+ A  + ++
Sbjct: 133 SVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDD 192

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           +  +D VSW S+ + Y    LP+  +++F  M   + ++P+    +S++ AC  L   + 
Sbjct: 193 LVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEM-GWNGVKPNSVTLSSILPACSELKDLKS 251

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G+ +H   V     ++  V S+LV +YA+C     AR VFD +  ++ VSW  +L+AY  
Sbjct: 252 GRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFT 311

Query: 184 SGRKKDAMEIFEQAPVRNL----FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
           +      + +F Q   + +      W A++ G +++     A     +M+  G    + +
Sbjct: 312 NREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFK-PNQI 370

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
            +SS + AC+    L +GK++H  V        L    A+V MYAKC D+  ++++F  +
Sbjct: 371 TISSFLPACSILESLRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMI 430

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
            RKDVV+W ++I+  A HG   E L L++ M+ +G+KPN VTF G++  CSH  LV +G 
Sbjct: 431 CRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGL 490

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           ++F SM  D+ + P   HY C++D+ SR+G L EA   I+ MP EP    W ALL AC+ 
Sbjct: 491 QIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRV 550

Query: 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
           ++N E+    AN L  ++P +P +Y+ L N+  +A +W   S+ R LM    + K PG S
Sbjct: 551 YKNVELAKISANKLFEIEPNNPGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCS 610

Query: 480 YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL 539
           +++ G   H F  G+ ++   D+I+  L EL  +MK  GY PDT  VL D++Q+EK   L
Sbjct: 611 WLQVGDRVHTFVVGDKNNMESDKIYNFLDELGEKMKSAGYKPDTDYVLQDIDQEEKAESL 670

Query: 540 FWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
             HSE+LAVA+G+L     + +RV KNLR+CGDCH  +K +S++    I+VRD+ R+HHF
Sbjct: 671 CSHSEKLAVAFGILNLNGQSSIRVFKNLRICGDCHNAIKYVSKVVGVTIIVRDSLRFHHF 730

Query: 600 KDGKCSCNDFW 610
           ++G CSC D W
Sbjct: 731 RNGNCSCQDLW 741



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 156/318 (49%), Gaps = 34/318 (10%)

Query: 57  AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116
           A  L + +PQ D  + +++++A+    LP + I +++++ A   ++P + VF ++ KACG
Sbjct: 85  AQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRA-RGIKPHNSVFLTVAKACG 143

Query: 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTA 176
           + G     K+VH   +      D  + ++L+  Y KC     AR VFD + +K+ VSWT+
Sbjct: 144 ASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTS 203

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
           M S Y   G  +  + +                               F EM   GV   
Sbjct: 204 MSSCYVNCGLPRLGLAV-------------------------------FCEMGWNGVK-P 231

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           + + LSSI+ AC+    L+ G+ IHG  +  G    +F+ +A+V +YA+C  +  A+ +F
Sbjct: 232 NSVTLSSILPACSELKDLKSGRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVF 291

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
             M  +DVVSW  ++     + + ++ LAL+ +M S GV+ +E T+  +I  C   G   
Sbjct: 292 DLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTE 351

Query: 357 KGRKLFKSMIEDYGITPS 374
           K  ++ + M ++ G  P+
Sbjct: 352 KAVEMLRKM-QNLGFKPN 368


>gi|297806459|ref|XP_002871113.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316950|gb|EFH47372.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 637

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 218/610 (35%), Positives = 352/610 (57%), Gaps = 33/610 (5%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           +Q S ++  L++CAR+   +  K  H + +++ L     L N LI+AY KC  V+ A  +
Sbjct: 61  VQASDFIEILQLCARNGAVMEAKACHGKTMRMELQGDVTLSNVLINAYSKCGFVELARQV 120

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
            + M +R  VSW +++  Y +  +  + + IF  M   +  +   F  +S++ ACG+   
Sbjct: 121 FDGMLERSLVSWNTMIGLYTRNRMESEALDIFWEMRN-EGFKFSEFTISSVLSACGANCD 179

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
               K++H C  +    D        +++Y                        TA+L  
Sbjct: 180 ALECKKLH-CLSMKTSLD--------LNLYVG----------------------TALLDL 208

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           YA+ G   DA+++FE    ++   W+++V+G VQS+N  +A   +   +R  ++  +   
Sbjct: 209 YAKCGMINDAVQVFESMQDKSSVTWSSMVAGYVQSKNYEEALLLYRRAQRMSLE-QNQFT 267

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           LSS++ AC+N A L  GKQ+H ++   G+ S +F++++ VDMYAKC  +  +  IF  ++
Sbjct: 268 LSSVICACSNLAALIEGKQMHAVIRKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQ 327

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            K++  W +II G A+H + +E + L+++M   G+ PNEVTF  L+  C H GLV +GR+
Sbjct: 328 EKNIELWNTIISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRR 387

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            FK M   YG++P++ HY+C++D+L R+G L EA  LIK++PFEP    W +LL++C+  
Sbjct: 388 FFKLMRTTYGLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFEPTASIWGSLLASCRVC 447

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
           +N E+    A  L  L+PE+  +++LLSN+YA+   W+ ++K RKL+   +VKK  G S+
Sbjct: 448 KNLELAEVAAKKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGQSW 507

Query: 481 IEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLF 540
           I+     HIF  GE+SHP   EI  +L  L  E+++ GY P     LHD+E  +KE  L 
Sbjct: 508 IDIKDKVHIFRVGESSHPRIREICTMLDNLVIELRKFGYKPSVEHELHDVEIGKKEELLM 567

Query: 541 WHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFK 600
            HSE+LA+ +GL+    G+ +R++KNLR+C DCH  MK  S  T+R I+VRDA R+HHF 
Sbjct: 568 QHSEKLALVFGLMCLPEGSTVRIMKNLRICVDCHEFMKAASMATRRFIIVRDANRFHHFS 627

Query: 601 DGKCSCNDFW 610
           DG CSC +FW
Sbjct: 628 DGHCSCGEFW 637


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 231/598 (38%), Positives = 341/598 (57%), Gaps = 33/598 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VCA+    +    +H  ++K GL     + N LI+ Y K   +Q A  + ++M  RD 
Sbjct: 229 LPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDL 288

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW SI+ AY Q N P   +  F  M  L  ++PD     SL      L   R+ + +  
Sbjct: 289 VSWNSIIAAYEQNNDPSTALRFFKGM-QLGGIRPDLLTVVSLTSIFSQLSDQRISRSILG 347

Query: 130 CFVLSPFCDDDVV-KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
             +   + D DVV  ++LV+MYAK G  N A  VFD +  K+++SW  +++ Y ++G   
Sbjct: 348 FVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLAS 407

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A                            IDA Y+ +E  R+ +      V  SI+ A 
Sbjct: 408 EA----------------------------IDA-YNMMEECRDTIPNQGTWV--SIIPAY 436

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           ++   L+ G +IH  +I       +F++  ++D+Y KC  +  A  +F  + R   V W 
Sbjct: 437 SHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWN 496

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           +II     HG+ EE L L+ +M++  VK + +TFV L+ ACSH GLV +G+K F  M ++
Sbjct: 497 AIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKE 556

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YGI PSL+HY C++DLL R+G+L++A  L++ MP +PD   W ALLSACK + N E+GT 
Sbjct: 557 YGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTL 616

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            ++ LL +  E+   Y+LLSN+YA+   W+ V KVR L     ++K PG+S +  G  + 
Sbjct: 617 ASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAE 676

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
           +FY G  +HP   EI++ L  L A+MK  GYVPD S V  D+E+ EKE+ L  HSERLA+
Sbjct: 677 VFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAI 736

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+G++ + P + +R+ KNLRVCGDCH   K ISRI++REIVVRD+ R+HHFKDG CSC
Sbjct: 737 AFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDGICSC 794



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 184/397 (46%), Gaps = 39/397 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LHA ++  G  Q   L   LI+ Y     +  +    + + +++  SW SI++AY + 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 83  NLPQKTISIFSTMLAL---DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
               + ++  + + ++     L+PD + F  ++KAC SL     GK+VH C     F DD
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDD 155

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             V +SLV +Y++ G+ + A  VF  +                               PV
Sbjct: 156 VFVAASLVHLYSRYGVLDVAHKVFVDM-------------------------------PV 184

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
           +++  W A++SG  Q+ N   A      M+ EGV + D + ++SI+  CA    +  G  
Sbjct: 185 KDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKM-DTITVASILPVCAQSDDVINGVL 243

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           IH  V+  G +S +F+SNA+++MY+K   +  A+ +F +M  +D+VSW SII    Q+  
Sbjct: 244 IHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNND 303

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
               L  +  M   G++P+ +T V L    S +      R +   +I    +   +    
Sbjct: 304 PSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGN 363

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            L+++ ++ G+++ A  +   +P   D  +W  L++ 
Sbjct: 364 ALVNMYAKLGYMNCAHTVFDQLP-RKDTISWNTLVTG 399



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 152/321 (47%), Gaps = 36/321 (11%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           F +L  +C ++ AT   K++HA  ++     + V+ + L+++Y   G  + +R+ FD I 
Sbjct: 25  FNALFNSCVNVNAT---KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            KN  SW +++SAY R G+  +AM    Q       L++    G ++       FY+F  
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQ-------LFSMCGGGHLRPD-----FYTFPP 129

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           + +  V +VD                   GK++H  V  +G+E  +F++ ++V +Y++  
Sbjct: 130 ILKACVSLVD-------------------GKKVHCCVFKMGFEDDVFVAASLVHLYSRYG 170

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            +  A  +F  M  KDV SW ++I G  Q+G A   L + + M   GVK + +T   ++ 
Sbjct: 171 VLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILP 230

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
            C+    V  G  L    +  +G+   +     L+++ S+ G L +A+ +   M    D 
Sbjct: 231 VCAQSDDVING-VLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVR-DL 288

Query: 408 PTWAALLSACKHHRNTEMGTR 428
            +W ++++A + + +     R
Sbjct: 289 VSWNSIIAAYEQNNDPSTALR 309



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 95/202 (47%), Gaps = 22/202 (10%)

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
            +++  +C N   +   K++H L++  G    + +S  ++++Y    DI  ++  F  + 
Sbjct: 25  FNALFNSCVN---VNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVS----AGVKPNEVTFVGLIYACSHVGLVG 356
           +K++ SW SII    + G+  E +   +++ S      ++P+  TF  ++ AC  V LV 
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC--VSLV- 138

Query: 357 KGRK----LFKSMIE-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
            G+K    +FK   E D  +  SL H      L SR G LD A  +   MP + D  +W 
Sbjct: 139 DGKKVHCCVFKMGFEDDVFVAASLVH------LYSRYGVLDVAHKVFVDMPVK-DVGSWN 191

Query: 412 ALLSACKHHRNTEMGTRVANHL 433
           A++S    + N      V N +
Sbjct: 192 AMISGFCQNGNAAGALGVLNRM 213


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/557 (38%), Positives = 333/557 (59%), Gaps = 33/557 (5%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           V     + E MP++D VSW +I+    +  L  +T+++   M   + L+PD F  +S++ 
Sbjct: 250 VDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGAN-LKPDSFTLSSVLP 308

Query: 114 ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS 173
                     GK++H C +      +  V SSL+DMYAKC    ++  VF  +  ++ +S
Sbjct: 309 LIAENVDISKGKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGIS 368

Query: 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233
           W ++++   ++G   + ++ F Q           ++   ++ ++     YSF        
Sbjct: 369 WNSIIAGCVQNGLFDEGLKFFRQ-----------MLMAKIKPKS-----YSF-------- 404

Query: 234 DIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
                   SSI+ ACA+   L LGKQ+HG +   G++  +FI++++VDMYAKC +I  A+
Sbjct: 405 --------SSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAR 456

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
            IF RMR +D+VSWT++I+G A HG A + + L+++M + G++PN V F+ ++ ACSH G
Sbjct: 457 QIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQMKTEGIEPNYVAFMAVLTACSHAG 516

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
           LV +  K F SM  D+GI P ++HY  + DLL R+G L+EA + I  MP  P    WA L
Sbjct: 517 LVDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMPIGPTGSVWATL 576

Query: 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473
           LSAC+ H+N +M  +VAN +L + P++  +YILL+N+Y++A  W+  +K R  +    ++
Sbjct: 577 LSACRVHKNVDMAEKVANRILEVDPKNTGAYILLANIYSAARRWKEAAKWRASLRRTGIR 636

Query: 474 KEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQK 533
           K P  S+IE     + F AG+ SHP  ++I E +  L   M++ GYVPDTS V HD+E++
Sbjct: 637 KTPACSWIEVRNKVYAFMAGDESHPCYEKIREAMEVLMELMEKEGYVPDTSEVHHDVEEE 696

Query: 534 EKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDA 593
           +K+  +  HSERLA+ +G++ +  GT +RV KNLRVC DCH   K IS+I  REIVVRD 
Sbjct: 697 QKKYLVCSHSERLAIVFGIINTPAGTTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDN 756

Query: 594 TRYHHFKDGKCSCNDFW 610
           +R+HHFK+G CSC D+W
Sbjct: 757 SRFHHFKNGTCSCGDYW 773



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 66/174 (37%), Positives = 100/174 (57%), Gaps = 1/174 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   I+ GL     + ++LID Y KC  V  ++ +   + +RD +SW SI+    Q 
Sbjct: 320 KEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQN 379

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            L  + +  F  ML + K++P  + F+S++ AC  L    LGKQ+H     + F ++  +
Sbjct: 380 GLFDEGLKFFRQML-MAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFI 438

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
            SSLVDMYAKCG    AR +FD ++L++ VSWTAM+   A  G   DA+E+FEQ
Sbjct: 439 ASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQ 492



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 103/439 (23%), Positives = 188/439 (42%), Gaps = 61/439 (13%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHAQ++K          + L+  Y   +L+  +  L   +     ++W S++  Y   
Sbjct: 28  QQLHAQVLKFQASSL-CNLSLLLSIYSHINLLHDSLRLFNTLHFPPALAWKSVIRCYTSH 86

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            LP K++  F  MLA   L PDH VF S++KAC  L    LG+ +H   +      D   
Sbjct: 87  GLPHKSLGSFIGMLA-SGLYPDHNVFPSVLKACAMLMDLNLGESLHGYIIRVGLDFDLYT 145

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK-DAMEIFEQAPVRN 201
            ++L++MY+K                         L    +SGR++  A ++ ++   R 
Sbjct: 146 GNALMNMYSK-------------------------LRFLKKSGRQRLGASQVLDEMTERT 180

Query: 202 LFLWTA--LVSGLVQSRNEIDAFYSFIEMR-REGVDIVDPLVLSSIVGACANFAVLE--- 255
             + TA  LV    +  ++I+AF   +  R RE     +  VL       + +  +E   
Sbjct: 181 RSVRTASVLVGNQGRKVSDIEAFNYDVSCRSRE----FEAQVLEIDYKPRSEYREMEACN 236

Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
           LG+QI  +  ++  +S                     + IF  M  KD+VSW +II G A
Sbjct: 237 LGQQIKDISHSMSVDS--------------------VRKIFEMMPEKDLVSWNTIIAGNA 276

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
           ++G   ETL +  EM  A +KP+  T   ++   +    + KG+++    I   G+   +
Sbjct: 277 RNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQ-GLDAEV 335

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
              + L+D+ ++   + ++  +   +  E D  +W ++++ C  +   + G +    +L 
Sbjct: 336 YVASSLIDMYAKCTRVVDSYRVFTLLT-ERDGISWNSIIAGCVQNGLFDEGLKFFRQMLM 394

Query: 436 LKPEDPSSYILLSNVYASA 454
            K + P SY   S + A A
Sbjct: 395 AKIK-PKSYSFSSIMPACA 412


>gi|359479914|ref|XP_002268148.2| PREDICTED: uncharacterized protein LOC100250295 [Vitis vinifera]
          Length = 1130

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/554 (39%), Positives = 321/554 (57%), Gaps = 9/554 (1%)

Query: 65  PQRDHVSWASILTAYNQANL-----PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
           P  +   W +++ A+ QA           ISIF  M     +QPD   F  L+++  S  
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRM-RFHGVQPDFHTFPFLLQSFASPS 78

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
              LG+ VHA  +      D  V++SL+ MY+ CG    AR VFD I   +  SW ++++
Sbjct: 79  LLHLGRSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIIN 138

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP- 238
           A  ++G    A  +F   P RN+  W+ +++G V+     +A   F EM+  GV+ V P 
Sbjct: 139 ANFQAGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPN 198

Query: 239 -LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297
              +S ++ AC     LE GK  H  +   G    + +  A++DMYAKC  +  A  +F 
Sbjct: 199 EFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFS 258

Query: 298 RM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
            +   KDV++W+++I G A HG AEE + L+ +M++ GV+PN VTF+ +  AC H GLV 
Sbjct: 259 NLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVS 318

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +G+   + M EDY I P++QHY C++DL  R+G + EA N++K+MP EPD   W ALLS 
Sbjct: 319 EGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSG 378

Query: 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEP 476
            + H + E        L+ L+P +  +Y+LLSNVYA    W+ V  VR LM  M +KK P
Sbjct: 379 SRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVP 438

Query: 477 GYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKE 536
           G S IE G   H F+ G+ SHP   +I  +L E+   +K  GYV +T  VL D++++ KE
Sbjct: 439 GCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKE 498

Query: 537 RQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRY 596
             L  HSE+LA+AYG LK+ PGT +R+VKNLR+C DCH+ +KMIS++  REI+VRD  R+
Sbjct: 499 LALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRF 558

Query: 597 HHFKDGKCSCNDFW 610
           HHF  G CSC D+W
Sbjct: 559 HHFTQGLCSCRDYW 572



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 143/340 (42%), Gaps = 78/340 (22%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +++HAQI++ GL     +  +LI  Y  C  + +A  + +E+PQ D  SW SI+ A  QA
Sbjct: 84  RSVHAQILRFGLAIDPFVQTSLISMYSSCGNLGFARQVFDEIPQPDLPSWNSIINANFQA 143

Query: 83  NL-----------PQKTISIFS----------------------TMLALDKLQPDHFVFA 109
            L           P++ +  +S                       ML ++ ++P+ F  +
Sbjct: 144 GLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPNEFTMS 203

Query: 110 SLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
            ++ ACG LGA   GK  HA         D V+ ++L+DMYAKCG    A  VF ++   
Sbjct: 204 GVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNL--- 260

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
                          G  KD M             W+A++SGL       +    F +M 
Sbjct: 261 ---------------GPNKDVMA------------WSAMISGLAMHGLAEECVGLFSKMI 293

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGK-------QIHGLVIALGYESCLFISNAIVDM 282
            +GV   + +   ++  AC +  ++  GK       + + ++  + +  C+      VD+
Sbjct: 294 NQGVR-PNAVTFLAVFCACVHGGLVSEGKDYLRRMTEDYSIIPTIQHYGCM------VDL 346

Query: 283 YAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAE 321
           Y +   I  A ++   M    DV+ W +++ G+  HG  E
Sbjct: 347 YGRAGRIKEAWNVVKSMPMEPDVLVWGALLSGSRMHGDIE 386



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 33/204 (16%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM-PQRD 68
           L  C R       K  HA I K G+     L   LID Y KC  V+ A  +   + P +D
Sbjct: 206 LAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKD 265

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            ++W+++++      L ++ + +FS M+    ++P+   F ++  AC   G    GK   
Sbjct: 266 VMAWSAMISGLAMHGLAEECVGLFSKMIN-QGVRPNAVTFLAVFCACVHGGLVSEGK--- 321

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
                      D ++    D            ++  +I+      +  M+  Y R+GR K
Sbjct: 322 -----------DYLRRMTEDY-----------SIIPTIQ-----HYGCMVDLYGRAGRIK 354

Query: 189 DAMEIFEQAPVR-NLFLWTALVSG 211
           +A  + +  P+  ++ +W AL+SG
Sbjct: 355 EAWNVVKSMPMEPDVLVWGALLSG 378


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/634 (35%), Positives = 359/634 (56%), Gaps = 66/634 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLI----------DAY------GKCDL 53
           L+ CA+ +     + +H Q++KLG      +  +LI          DAY         D+
Sbjct: 71  LKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDV 130

Query: 54  VQY---------------AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
           V Y               A  L +E+P +D VSW ++++ Y +    ++ + +F  M+ +
Sbjct: 131 VSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKM 190

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           + ++PD   + +++ AC   G+  LG+QVH+      F  +  + ++L+D+Y+KCG    
Sbjct: 191 N-VRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVET 249

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A  +F  +  K+ +SW  ++  Y      K+A+ +F+                       
Sbjct: 250 ACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQ----------------------- 286

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL--GYESCLFIS 276
                   EM R G +  + + + S++ ACA+   +++G+ IH  +     G  +   + 
Sbjct: 287 --------EMLRSG-ETPNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR 337

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
            +++DMYAKC DI AA  +F  M  K + SW ++I G A HG+A+ +  L+  M   G++
Sbjct: 338 TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIE 397

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
           P+++TFVGL+ ACSH G++  GR +F+SM +DY +TP L+HY C++DLL  SG   EAE 
Sbjct: 398 PDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEE 457

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           +I  M  EPD   W +LL ACK H N E+    A +L+ ++PE+PSSYILLSN+YASA  
Sbjct: 458 MINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYASAGR 517

Query: 457 WQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKR 516
           W+ V+++R L++   +KK PG S IE       F  G+  HP   EI+ +L E++  ++ 
Sbjct: 518 WEDVARIRALLNGKCMKKVPGCSSIEVDSVVFEFVVGDKFHPQNREIYGMLEEMEVLLEE 577

Query: 517 RGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIV 576
            G+VPDTS VL +ME++ KE  L  HSE+LA+A+GL+ + PGT L +VKNLRVC +CH  
Sbjct: 578 AGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEA 637

Query: 577 MKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            K++S+I KREIV RD TR+HHF+DG CSCND+W
Sbjct: 638 TKLLSKIYKREIVARDRTRFHHFRDGVCSCNDYW 671



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/413 (27%), Positives = 211/413 (51%), Gaps = 37/413 (8%)

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
           D + YA  + E + + + + W +++  +  ++ P  +++++  M++L  L P+ + F  L
Sbjct: 12  DGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLG-LLPNSYTFPFL 70

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           +K+C        G+Q+H   +   F  D  V +SL+ MY +     +A  VFD    ++ 
Sbjct: 71  LKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDV 130

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           VS+TA+++ YA  G  + A ++F++ PV+++  W A++SG  ++    +A   F EM + 
Sbjct: 131 VSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKM 190

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
            V   D     +++ ACA+   +ELG+Q+H  V   G++S L I NA++D+Y+KC ++  
Sbjct: 191 NVR-PDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVET 249

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           A  +F  +  KDV+SW ++I G       +E L L+ EM+ +G  PN+VT + ++ AC+H
Sbjct: 250 ACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAH 309

Query: 352 VGLVGKGRKLFKSMIEDY-GITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--------- 401
           +G +  GR +   + +   G+T +    T L+D+ ++ G ++ A  +  +M         
Sbjct: 310 LGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWN 369

Query: 402 -------------------------PFEPDEPTWAALLSACKHHRNTEMGTRV 429
                                      EPD+ T+  LLSAC H    ++G  +
Sbjct: 370 AMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHI 422



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 152/356 (42%), Gaps = 50/356 (14%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S Y+  L  CA        + +H+ +   G      + N LID Y KC  V+ A  L + 
Sbjct: 197 STYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVETACGLFQG 256

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           +  +D +SW +++  Y   NL ++ + +F  ML   +  P+     S++ AC  LGA  +
Sbjct: 257 LSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE-TPNDVTMLSVLPACAHLGAIDI 315

Query: 124 GKQVHACF--VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
           G+ +H      L    +   +++SL+DMYAKCG    A  VF+S+  K+  SW AM+  +
Sbjct: 316 GRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGF 375

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
           A  GR   + ++F +                               MR+ G++  D +  
Sbjct: 376 AMHGRADASFDLFSR-------------------------------MRKIGIE-PDDITF 403

Query: 242 SSIVGACANFAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
             ++ AC++  +L+LG+ I       + +   L +  C+      +D+         A++
Sbjct: 404 VGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCM------IDLLGHSGLFKEAEE 457

Query: 295 IFGRMRRK-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK-PNEVTFVGLIYA 348
           +   M  + D V W S++     HG  E   +    ++    + P+    +  IYA
Sbjct: 458 MINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQNLIKIEPENPSSYILLSNIYA 513


>gi|359483655|ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
          Length = 613

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/594 (37%), Positives = 339/594 (57%), Gaps = 43/594 (7%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAY------GKCDLVQYAHHLLEEMPQRDHVSWASIL 76
           + +HA  I+ G+    PL N  +  Y        C  + YAH +  ++   +  +W +++
Sbjct: 57  RQIHAFSIRHGV----PLTNPDMGKYLIFTLLSFCSPMSYAHQIFSQIQNPNIFTWNTMI 112

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
             Y ++  P   + ++  M  +  ++PD   +  L+KA   L   R G++VH+  + + F
Sbjct: 113 RGYAESENPMPALELYRQM-HVSCIEPDTHTYPFLLKAIAKLMDVREGEKVHSIAIRNGF 171

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
                V+++LV MYA CG   +A  +F+ +  +N V+W ++++ YA +GR  +A+ +F +
Sbjct: 172 ESLVFVQNTLVHMYAACGHAESAHKLFELMAERNLVTWNSVINGYALNGRPNEALTLFRE 231

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
             +R +               E D F                  + S++ ACA    L L
Sbjct: 232 MGLRGV---------------EPDGF-----------------TMVSLLSACAELGALAL 259

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           G++ H  ++ +G +  L   NA++D+YAKC  I  A  +F  M  K VVSWTS+IVG A 
Sbjct: 260 GRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSVVSWTSLIVGLAV 319

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           +G  +E L L+ E+   G+ P+E+TFVG++YACSH G+V +G   FK M E+YGI P ++
Sbjct: 320 NGFGKEALELFKELERKGLMPSEITFVGVLYACSHCGMVDEGFDYFKRMKEEYGIVPKIE 379

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
           HY C++DLL R+G + +A   I+ MP +P+   W  LL AC  H +  +G      LL L
Sbjct: 380 HYGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGACTIHGHLALGEVARAQLLQL 439

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETS 496
           +P+    Y+LLSN+YAS   W  V KVR+ M    VKK PG+S +E     H F  G+ S
Sbjct: 440 EPKHSGDYVLLSNLYASEQRWSDVHKVRRTMLREGVKKTPGHSLVELRNRLHEFVMGDRS 499

Query: 497 HPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSV 556
           HP  +EI+  L E+   +K  GYVP  S+VL D+E++EKE  L +HSE++A+A+ L+ + 
Sbjct: 500 HPQTEEIYVKLAEITKLLKLEGYVPHISNVLADIEEEEKETALSYHSEKIAIAFMLINTA 559

Query: 557 PGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            G  +RVVKNLRVC DCH+ +K+IS++  REIVVRD +R+HHFKDG CSC D+W
Sbjct: 560 AGIPIRVVKNLRVCADCHLAIKLISKVFDREIVVRDRSRFHHFKDGHCSCKDYW 613



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 9/176 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        +  H  ++K+GL       N L+D Y KC  ++ AH + +EM ++  
Sbjct: 248 LSACAELGALALGRRAHVYMVKVGLDGNLHAGNALLDLYAKCGSIRQAHKVFDEMEEKSV 307

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
           VSW S++         ++ + +F   L    L P    F  ++ AC   G    G    K
Sbjct: 308 VSWTSLIVGLAVNGFGKEALELFKE-LERKGLMPSEITFVGVLYACSHCGMVDEGFDYFK 366

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
           ++   + + P  +       +VD+  + GL   A     ++ ++ N+V W  +L A
Sbjct: 367 RMKEEYGIVPKIEH---YGCMVDLLGRAGLVKQAHEFIQNMPMQPNAVVWRTLLGA 419


>gi|242035229|ref|XP_002465009.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
 gi|241918863|gb|EER92007.1| hypothetical protein SORBIDRAFT_01g030410 [Sorghum bicolor]
          Length = 684

 Score =  430 bits (1106), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/569 (38%), Positives = 328/569 (57%), Gaps = 34/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           + L+  Y +C  +  A  + + MP++DHV+W++++  +  A  P + + ++S M     +
Sbjct: 150 SALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSRMRE-HGV 208

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             D  V   +++AC   G TR+G  VH  F+      D V+ +SLVDMYAK G  + AR 
Sbjct: 209 AEDEVVMVGVIQACTLTGNTRMGASVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVAR- 267

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
                                         ++F   P RN   W AL+SG  Q+ +  +A
Sbjct: 268 ------------------------------QVFRMMPYRNAVSWNALISGFAQNGHADEA 297

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F EM   G+   D   L S + ACA+   L+LGK IHG ++      C+ +  A++D
Sbjct: 298 LDLFREMSTSGLQ-PDSGALVSALLACADVGFLKLGKSIHGFILRRLEFQCI-LGTAVLD 355

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY+KC  + +A+ +F ++  +D+V W ++I     HG   + LAL+ E+   G+KP+  T
Sbjct: 356 MYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQELNETGIKPDHAT 415

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F  L+ A SH GLV +G+  F  MI ++GI P+ +H  C++DLL+RSG ++EA  ++ +M
Sbjct: 416 FASLLSALSHSGLVEEGKFWFDRMITEFGIEPTEKHCVCVVDLLARSGLVEEANEMLASM 475

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
             EP  P W ALLS C +++  E+G  +A  +L  +PED     L+SN+YA+A  W  V 
Sbjct: 476 HTEPTIPIWVALLSGCLNNKKLELGETIAKKILESQPEDIGVLALVSNLYAAAKKWDKVR 535

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           ++RKLM     KK PGYS IE     H F   + SHP   EI +++++L  EM++ GYVP
Sbjct: 536 EIRKLMKDSGSKKVPGYSLIEVHGTRHAFVMEDQSHPQHQEILKMISKLSFEMRKMGYVP 595

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
            T  V HD+++  KE+ L +HSERLA+A+GLL + PGT L ++KNLRVCGDCH  +K IS
Sbjct: 596 RTEFVYHDLDEDVKEQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYIS 655

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I  REIVVRDA R+HHFKDG CSC D+W
Sbjct: 656 KIVDREIVVRDAKRFHHFKDGACSCGDYW 684



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 178/398 (44%), Gaps = 42/398 (10%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHV--SWASILTAYNQA 82
           LHA ++        P   +L  AY +   +  A   L   P       +W ++L A ++A
Sbjct: 34  LHALLVVSSSQNLFP---SLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSRA 90

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P   + +F  + +    +PD   F   + AC  LG     + V      + +  D  V
Sbjct: 91  GSPGAALRVFRALPS--SARPDSTTFTLALTACARLGDLDAAEAVRVRAFAAGYGRDVFV 148

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            S+L+ +Y++CG   +A  VFD +  K+ V+W+ M++ +  +GR  +A+ ++ +      
Sbjct: 149 CSALLHVYSRCGAMGDAIRVFDGMPRKDHVAWSTMVAGFVSAGRPVEALGMYSR------ 202

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                    MR  GV   D +V+  ++ AC       +G  +HG
Sbjct: 203 -------------------------MREHGV-AEDEVVMVGVIQACTLTGNTRMGASVHG 236

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             +  G    + I+ ++VDMYAK      A+ +F  M  ++ VSW ++I G AQ+G A+E
Sbjct: 237 RFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNGHADE 296

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L+ EM ++G++P+    V  + AC+ VG +  G+ +   ++        L   T +L
Sbjct: 297 ALDLFREMSTSGLQPDSGALVSALLACADVGFLKLGKSIHGFILRRLEFQCILG--TAVL 354

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           D+ S+ G L+ A  L   +    D   W A+++ C  H
Sbjct: 355 DMYSKCGSLESARKLFNKLS-SRDLVLWNAMIACCGTH 391



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 145/331 (43%), Gaps = 41/331 (12%)

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSV--SWTAMLSAYAR 183
           ++HA  V+S       +  SL   YA+ G  + A +   +     S   +W A+L+A +R
Sbjct: 33  RLHALLVVS---SSQNLFPSLAAAYARVGALDAAESTLAASPSSRSCIPAWNALLAARSR 89

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           +G    A+ +F   P                +R +   F                L L+ 
Sbjct: 90  AGSPGAALRVFRALPS--------------SARPDSTTF---------------TLALT- 119

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
              ACA    L+  + +     A GY   +F+ +A++ +Y++C  +  A  +F  M RKD
Sbjct: 120 ---ACARLGDLDAAEAVRVRAFAAGYGRDVFVCSALLHVYSRCGAMGDAIRVFDGMPRKD 176

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
            V+W++++ G    G+  E L +Y  M   GV  +EV  VG+I AC+  G    G  +  
Sbjct: 177 HVAWSTMVAGFVSAGRPVEALGMYSRMREHGVAEDEVVMVGVIQACTLTGNTRMGASVHG 236

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
             +  +G+   +   T L+D+ +++GH D A  + + MP+  +  +W AL+S    + + 
Sbjct: 237 RFLR-HGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYR-NAVSWNALISGFAQNGHA 294

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASA 454
           +    +    +S     P S  L+S + A A
Sbjct: 295 DEALDLFRE-MSTSGLQPDSGALVSALLACA 324



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 91/173 (52%), Gaps = 2/173 (1%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           ++H + ++ G+     +  +L+D Y K      A  +   MP R+ VSW ++++ + Q  
Sbjct: 233 SVHGRFLRHGMRMDVVIATSLVDMYAKNGHFDVARQVFRMMPYRNAVSWNALISGFAQNG 292

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
              + + +F  M +   LQPD     S + AC  +G  +LGK +H  F+L       ++ 
Sbjct: 293 HADEALDLFREM-STSGLQPDSGALVSALLACADVGFLKLGKSIHG-FILRRLEFQCILG 350

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           ++++DMY+KCG   +AR +F+ +  ++ V W AM++     G   DA+ +F++
Sbjct: 351 TAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAMIACCGTHGCGHDALALFQE 403


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/601 (34%), Positives = 338/601 (56%), Gaps = 34/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CA+ +     + +H+ + +  L   G L N+LI  Y KC  V  A H+ + +P RD 
Sbjct: 69  ITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTRDV 128

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW  ++T Y Q ++P + + +   ML   + +P  F F S +KA G+ G   +G+Q+HA
Sbjct: 129 VSWTYLITGYAQNDMPAEALGLLPDMLRA-RFRPSGFTFTSFLKAAGACGGRGIGEQMHA 187

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V     +D  V S+L+DMYA                               R  +   
Sbjct: 188 LAVKYNLDEDVYVGSALLDMYA-------------------------------RCQQMDM 216

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +F+    +N   W AL++G  +  +       F EM+R G         SS+  A A
Sbjct: 217 AIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNGFGATH-FTYSSVFSALA 275

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LE G+ +H  +I  G +   F++N I+ MYAK   ++ A+ +F R+ ++D+V+W +
Sbjct: 276 RIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNT 335

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           ++   AQ+G  +E +A ++E+   G++ N++TF+ ++ ACSH GLV +G++ F  M++DY
Sbjct: 336 MLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTACSHGGLVKEGKQYF-DMMKDY 394

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            + P + HY   +DLL R+G L EA   +  MP EP    W ALL AC+ H+N ++G   
Sbjct: 395 NVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKIGQYA 454

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A+H+  L PED    +LL N+YAS   W   ++VRK+M    VKKEP  S++E     H+
Sbjct: 455 ADHVFELDPEDTGPPVLLYNIYASTGQWDDAARVRKMMKATGVKKEPACSWVEIENSVHM 514

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F A +++HP  +EI+ +  E++  +K+ GYVP+T  VL  ++++E+E +L +HSE++A+A
Sbjct: 515 FVADDSTHPKSEEIYRMWEEVNTRIKKAGYVPNTDYVLLHIKEQERETKLQYHSEKIALA 574

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + L+    G  +R++KN+R+CGDCH   + +S + KREIVVRD  R+HHF +G CSC D+
Sbjct: 575 FALINMPAGATIRIMKNIRICGDCHSAFRYVSEVFKREIVVRDTNRFHHFSNGSCSCGDY 634

Query: 610 W 610
           W
Sbjct: 635 W 635



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/322 (25%), Positives = 148/322 (45%), Gaps = 34/322 (10%)

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
           +L   +L P   V+ S++ AC         + +H+    S    D  + +SL+ MY KCG
Sbjct: 52  LLLTGELAPTPRVYHSIITACAQSKNLAGARAIHSHLSRSRLAGDGFLLNSLIHMYCKCG 111

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
             ++AR VFD I  ++ VSWT +++ YA++    +A+                L+  +++
Sbjct: 112 AVSDARHVFDGIPTRDVVSWTYLITGYAQNDMPAEAL---------------GLLPDMLR 156

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF 274
           +R            R  G      L      GAC    +   G+Q+H L +    +  ++
Sbjct: 157 AR-----------FRPSGFTFTSFL---KAAGACGGRGI---GEQMHALAVKYNLDEDVY 199

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
           + +A++DMYA+C  +  A  +F  +  K+ VSW ++I G A+ G  E TL  + EM   G
Sbjct: 200 VGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNG 259

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
                 T+  +  A + +G + +GR +   MI+  G   +      +L + ++SG + +A
Sbjct: 260 FGATHFTYSSVFSALARIGALEQGRWVHAHMIKS-GQKLTAFVANTILGMYAKSGSMVDA 318

Query: 395 ENLIKAMPFEPDEPTWAALLSA 416
             +   +  + D  TW  +L+A
Sbjct: 319 RKVFDRVD-QRDLVTWNTMLTA 339


>gi|356519952|ref|XP_003528632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 693

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/607 (36%), Positives = 346/607 (57%), Gaps = 44/607 (7%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NTL+ AY K  +V+  H + ++MP RD VS+ +++  +       K + +   M   D  
Sbjct: 93  NTLLSAYAKMGMVENLHVVFDQMPYRDSVSYNTLIACFASNGHSGKALKVLVRMQE-DGF 151

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           QP  +   + ++AC  L   R GKQ+H   V++   ++  V++++ DMYAKCG  + AR 
Sbjct: 152 QPTQYSHVNALQACSQLLDLRHGKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARL 211

Query: 162 VFDSIKLKNSVSWTAMLS-----------------------------------AYARSGR 186
           +FD +  KN VSW  M+S                                   AY R GR
Sbjct: 212 LFDGMIDKNVVSWNLMISGYVKMGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGR 271

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
             DA  +F + P ++   WT ++ G  Q+  E DA+  F +M R  V   D   +SS+V 
Sbjct: 272 VDDARNLFIKLPKKDEICWTTMIVGYAQNGREEDAWMLFGDMLRRNVK-PDSYTISSMVS 330

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           +CA  A L  G+ +HG V+ +G ++ + +S+A+VDMY KC   + A+ IF  M  ++V++
Sbjct: 331 SCAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVIT 390

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W ++I+G AQ+GQ  E L LY+ M     KP+ +TFVG++ AC +  +V +G+K F S I
Sbjct: 391 WNAMILGYAQNGQVLEALTLYERMQQENFKPDNITFVGVLSACINADMVKEGQKYFDS-I 449

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH--RNTE 424
            ++GI P+L HY C++ LL RSG +D+A +LI+ MP EP+   W+ LLS C     +N E
Sbjct: 450 SEHGIAPTLDHYACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLSVCAKGDLKNAE 509

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +    A+HL  L P +   YI+LSN+YA+   W+ V+ VR LM     KK   YS++E G
Sbjct: 510 LA---ASHLFELDPRNAGPYIMLSNLYAACGRWKDVAVVRSLMKEKNAKKFAAYSWVEVG 566

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
              H F + +  HP   +I+  L  L + +++ GY PDT+ VLH++ ++EK R + +HSE
Sbjct: 567 NKVHRFVSEDHYHPEVGKIYGELNRLISILQQIGYNPDTNIVLHNVGEEEKFRSISYHSE 626

Query: 545 RLAVAYGLLKSVPGTV-LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           +LA+A+ L++   G   +R++KN+RVC DCH+ MK  S    R I++RD+ R+HHF  GK
Sbjct: 627 KLALAFALIRKPNGVAPIRIIKNIRVCDDCHVFMKFASITISRPIIMRDSNRFHHFFGGK 686

Query: 604 CSCNDFW 610
           CSCND W
Sbjct: 687 CSCNDNW 693



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 147/284 (51%), Gaps = 13/284 (4%)

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  + + L+ +YAK G  ++A+ VFD++  ++  SW  +LSAYA+ G  ++   +F+Q P
Sbjct: 57  DSFIHNQLLHLYAKFGKLSDAQNVFDNMTKRDVYSWNTLLSAYAKMGMVENLHVVFDQMP 116

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI--VGACANFAVLEL 256
            R+   +  L++    + +   A    + M+ +G     P   S +  + AC+    L  
Sbjct: 117 YRDSVSYNTLIACFASNGHSGKALKVLVRMQEDGFQ---PTQYSHVNALQACSQLLDLRH 173

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           GKQIHG ++        F+ NA+ DMYAKC DI  A+ +F  M  K+VVSW  +I G  +
Sbjct: 174 GKQIHGRIVVADLGENTFVRNAMTDMYAKCGDIDKARLLFDGMIDKNVVSWNLMISGYVK 233

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
            G   E + L++EM  +G+KP+ VT   ++ A    G V   R LF  + +   I     
Sbjct: 234 MGNPNECIHLFNEMQLSGLKPDLVTVSNVLNAYFRCGRVDDARNLFIKLPKKDEIC---- 289

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSAC 417
            +T ++   +++G  ++A  L   M     +PD  T ++++S+C
Sbjct: 290 -WTTMIVGYAQNGREEDAWMLFGDMLRRNVKPDSYTISSMVSSC 332



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/238 (20%), Positives = 106/238 (44%), Gaps = 26/238 (10%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA+       + +H +++ +G+     + + L+D Y KC +   A  + E MP R+ ++W
Sbjct: 332 CAKLASLYHGQVVHGKVVVMGIDNSMLVSSALVDMYCKCGVTLDARVIFETMPIRNVITW 391

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            +++  Y Q     + ++++  M   +  +PD+  F  ++ AC +    + G++      
Sbjct: 392 NAMILGYAQNGQVLEALTLYERM-QQENFKPDNITFVGVLSACINADMVKEGQKYFDSIS 450

Query: 133 ---LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKK 188
              ++P  D     + ++ +  + G  + A  +   +  + N   W+ +LS  A+   K 
Sbjct: 451 EHGIAPTLDH---YACMITLLGRSGSVDKAVDLIQGMPHEPNYRIWSTLLSVCAKGDLKN 507

Query: 189 ---DAMEIFEQAP--------VRNLFL----W--TALVSGLVQSRNEID-AFYSFIEM 228
               A  +FE  P        + NL+     W   A+V  L++ +N    A YS++E+
Sbjct: 508 AELAASHLFELDPRNAGPYIMLSNLYAACGRWKDVAVVRSLMKEKNAKKFAAYSWVEV 565


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  430 bits (1105), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/602 (36%), Positives = 343/602 (56%), Gaps = 35/602 (5%)

Query: 10  LRVCARH-QIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L+ CAR   + L VK +H  ++K G      +  +L+  Y KC  ++ AH + +++P ++
Sbjct: 119 LKACARLLDLQLGVK-IHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKN 177

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW +I++ Y      ++ I +F  +L ++ L PD F    ++ AC  LG    G+ +H
Sbjct: 178 VVSWTAIISGYIGVGKFREAIDMFRRLLEMN-LAPDSFTIVRVLSACTQLGDLNSGEWIH 236

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
            C +      +  V +SLVDMYA                               + G  +
Sbjct: 237 KCIMEMGMVRNVFVGTSLVDMYA-------------------------------KCGNME 265

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            A  +F+  P +++  W A++ G   +    +A   F++M+RE V   D   +  ++ AC
Sbjct: 266 KARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVK-PDCYTVVGVLSAC 324

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A    LELG+ + GLV    +     +  A++D+YAKC  +  A ++F  M+ KD V W 
Sbjct: 325 ARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWN 384

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           +II G A +G  + +  L+ ++   G+KP+  TF+GL+  C+H GLV +GR+ F SM   
Sbjct: 385 AIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRF 444

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           + +TPS++HY C++DLL R+G LDEA  LI+ MP E +   W ALL AC+ HR+T++   
Sbjct: 445 FSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAEL 504

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
               L+ L+P +  +Y+LLSN+Y++   W   +KVR  M+   ++K PG S+IE     H
Sbjct: 505 ALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSMNEKRIQKPPGCSWIEVDGIVH 564

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F  G+  HPL ++I+  L EL  +MK  GYVP T  VL D+E++EKE  L  HSE+LA+
Sbjct: 565 EFLVGDKYHPLSEKIYAKLDELTKKMKVAGYVPTTDFVLFDIEEEEKEHFLGCHSEKLAI 624

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+GL+ + P  V+RVVKNLRVCGDCH+ +K+IS IT REI VRD  R+H F++G CSCND
Sbjct: 625 AFGLISATPTAVIRVVKNLRVCGDCHMAIKLISSITGREITVRDNNRFHCFREGSCSCND 684

Query: 609 FW 610
           +W
Sbjct: 685 YW 686



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 123/224 (54%), Gaps = 3/224 (1%)

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F Q    N+FLW  ++ GLV +    DA   +  MR EG  + +      ++ ACA   
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGF-LPNNFTFPFVLKACARLL 126

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
            L+LG +IH LV+  G++  +F+  ++V +YAKC  +  A  +F  +  K+VVSWT+II 
Sbjct: 127 DLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIIS 186

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G    G+  E + ++  ++   + P+  T V ++ AC+ +G +  G  + K ++E  G+ 
Sbjct: 187 GYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIME-MGMV 245

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            ++   T L+D+ ++ G++++A ++   MP E D  +W A++  
Sbjct: 246 RNVFVGTSLVDMYAKCGNMEKARSVFDGMP-EKDIVSWGAMIQG 288



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 73/144 (50%), Gaps = 6/144 (4%)

Query: 277 NAIVDMYAKCS----DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           N +++M  +CS    D    + +F ++++ ++  W ++I G   +   ++ +  Y  M S
Sbjct: 46  NYLLNMILRCSFDFSDTNYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRS 105

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
            G  PN  TF  ++ AC+ +  +  G K+  +++   G    +   T L+ L ++ G+L+
Sbjct: 106 EGFLPNNFTFPFVLKACARLLDLQLGVKI-HTLVVKGGFDCDVFVKTSLVCLYAKCGYLE 164

Query: 393 EAENLIKAMPFEPDEPTWAALLSA 416
           +A  +   +P + +  +W A++S 
Sbjct: 165 DAHKVFDDIP-DKNVVSWTAIISG 187


>gi|297795617|ref|XP_002865693.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311528|gb|EFH41952.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 640

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/574 (39%), Positives = 347/574 (60%), Gaps = 18/574 (3%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISI--FSTMLALDKLQPDHFVFASL 111
           + YAH +  +MPQR+  SW +I+  +++++  +  I+I  F  M++ + ++P+ F F S+
Sbjct: 68  LDYAHKIFNQMPQRNCFSWNTIIRGFSESDEDKALIAITLFCEMMSDEFIEPNRFTFPSV 127

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF-------- 163
           +KAC   G  + GKQ+H   +   F  D+ V S+LV MY  CGL  +A  +F        
Sbjct: 128 LKACAKTGKIQQGKQIHGLALKYGFGGDEFVMSNLVRMYVICGLMKDACVLFYKNIIERE 187

Query: 164 -----DSIKLKNSVS-WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
                D  K    V  W  M+  Y R G  K A  +F++   R++  W  ++SG  Q+  
Sbjct: 188 MVMMIDRRKRDGEVVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGF 247

Query: 218 EIDAFYSFIEMRREGVDIVDPLV-LSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
             DA   F EM++ G DI    V L S++ A +    LELG+ +H      G      + 
Sbjct: 248 FKDAVEVFREMKK-GEDIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLG 306

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
           +A++DMY+KC  I  A  +F R+ R++V++W+++I G A HGQA + +  + +M  AGV+
Sbjct: 307 SALIDMYSKCGIIEKAIMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVR 366

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
           P++V ++ L+ ACSH GLV +GR+ F  M+   G+ P ++HY C++DLL R G LDEAE 
Sbjct: 367 PSDVAYINLLTACSHAGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEE 426

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
            I  MP +PD+  W ALL AC+ HRN EMG RVAN L+ + P D  +Y+ LSN+YAS   
Sbjct: 427 FILNMPIKPDDVIWKALLGACRMHRNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGN 486

Query: 457 WQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKR 516
           W  VS++R  M  M+++K+PG S+I+     H F   + SHP   EI  +L E+  +++ 
Sbjct: 487 WSEVSEMRLRMKEMDIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRL 546

Query: 517 RGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIV 576
            GY P T+ VL ++E+++KE  L +HSE++A A+GL+ + PG  +R+VKNLR+C DCH  
Sbjct: 547 AGYRPITTQVLLNLEEEDKENALHYHSEKMATAFGLISTSPGKPIRIVKNLRICEDCHSS 606

Query: 577 MKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +K+IS++ KR+I VRD  R+HHF+DG CSC D+W
Sbjct: 607 IKLISKVYKRKITVRDRKRFHHFQDGSCSCMDYW 640



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 168/351 (47%), Gaps = 55/351 (15%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L N +ID Y +    + A  L ++M QR  VSW ++++ Y+Q    +  + +F  M   +
Sbjct: 203 LWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSQNGFFKDAVEVFREMKKGE 262

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            ++P++    S++ A   LG+  LG+ +H     S    DDV+ S+L+DMY+KCG+   A
Sbjct: 263 DIRPNYVTLVSVLPAVSRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKA 322

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF---EQAPVRN-----LFLWTALV-S 210
             VF+ +  +N ++W+AM++ +A  G+  DA++ F    QA VR      + L TA   +
Sbjct: 323 IMVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHA 382

Query: 211 GLVQSRNE-------IDAFYSFIE-------------MRREGVDIV-------DPLVLSS 243
           GLV+           +D     IE             +  E  + +       D ++  +
Sbjct: 383 GLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRLGLLDEAEEFILNMPIKPDDVIWKA 442

Query: 244 IVGACANFAVLELGKQIHGLVIAL-GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           ++GAC     +E+GK++  +++ +  ++S  ++  A+ +MYA   +     ++  RM+  
Sbjct: 443 LLGACRMHRNVEMGKRVANILMDMVPHDSGAYV--ALSNMYASQGNWSEVSEMRLRMKEM 500

Query: 303 DV-----VSWTSI-------IVGTAQHGQAEET----LALYDEMVSAGVKP 337
           D+      SW  I       +V    H +A+E     + + D++  AG +P
Sbjct: 501 DIRKDPGCSWIDIDGVLHEFLVEDDSHPRAKEINSMLVEISDKLRLAGYRP 551


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/633 (36%), Positives = 352/633 (55%), Gaps = 76/633 (12%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   ++ GL +   + N ++D Y KC +++ A+ + E M  +D VSW +++T Y+Q 
Sbjct: 270 KQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQI 329

Query: 83  NLPQKTISIFSTML--------------------------ALDKL--------QPDHFVF 108
                 + +F  +                           ALD          +P+    
Sbjct: 330 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTL 389

Query: 109 ASLVKACGSLGATRLGKQVHACFVLSPFC--------DDDVVKSSLVDMYAKCGLPNNAR 160
            SL+  C S G    GK+ H C  +            DD +V ++L+DMY+KC  P  AR
Sbjct: 390 VSLLSGCASAGTLLHGKETH-CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAAR 448

Query: 161 AVFDSI--KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A+FD I  K ++ V+WT ++   A+ G   +A+E+F Q               ++Q  N 
Sbjct: 449 AMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQ---------------MLQPDNF 493

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC-LFISN 277
           +               + +   +S  + ACA    L  G+QIH  V+   +ES  LF++N
Sbjct: 494 V---------------MPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVAN 538

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
            ++DMY+K  D+ AA+ +F  M +++ VSWTS++ G   HG+ EE L ++ EM    + P
Sbjct: 539 CLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVP 598

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           + VTFV ++YACSH G+V +G   F  M +D+G+ P  +HY C++DLLSR+G LDEA  L
Sbjct: 599 DGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMEL 658

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           I+ MP +P    W ALLSAC+ + N E+G   AN LL L+  +  SY LLSN+YA+A  W
Sbjct: 659 IRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCW 718

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
           + V+++R LM    +KK PG S+++  KG+  F+AG+ SHP+  +I++LL +L   +K  
Sbjct: 719 KDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKAL 778

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GYVPD    LHD++ +EK   L  HSE+LA+AYG+L + PG  +R+ KNLR CGDCH   
Sbjct: 779 GYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAF 838

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             IS I + EI+VRD++R+HHFK+G CSC  +W
Sbjct: 839 TYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 871



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 135/433 (31%), Positives = 222/433 (51%), Gaps = 20/433 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR-- 67
           L+ C          ++HA +   G      + N L+  YG+C   + A  + +EM +R  
Sbjct: 152 LKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGV 211

Query: 68  -DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
            D VSW SI+ AY Q     + + +F  M     ++PD     +++ AC S+GA   GKQ
Sbjct: 212 GDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQ 271

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           VH   + S   +D  V +++VDMYAKCG+   A  VF+ +K+K+ VSW AM++ Y++ GR
Sbjct: 272 VHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGR 331

Query: 187 KKDAMEIFEQAPVR----NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
             DA+ +FE+        N+  W+A+++G  Q     +A   F +M   G +  + + L 
Sbjct: 332 FDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSE-PNVVTLV 390

Query: 243 SIVGACANFAVLELGKQIHGLVIA--LGYESC-----LFISNAIVDMYAKCSDIIAAKDI 295
           S++  CA+   L  GK+ H   I   L  +       L + NA++DMY+KC    AA+ +
Sbjct: 391 SLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAM 450

Query: 296 FGRMRRKD--VVSWTSIIVGTAQHGQAEETLALYDEMVSAG--VKPNEVTFVGLIYACSH 351
           F  +  KD  VV+WT +I G AQHG+A E L L+ +M+     V PN  T    + AC+ 
Sbjct: 451 FDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACAR 510

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
           +G +  GR++   ++ +   +  L    CL+D+ S+SG +D A  +   M  + +  +W 
Sbjct: 511 LGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAARVVFDNM-HQRNGVSWT 569

Query: 412 ALLSACKHHRNTE 424
           +L++    H   E
Sbjct: 570 SLMTGYGMHGRGE 582



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 150/293 (51%), Gaps = 35/293 (11%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PDH+ F  ++KACG + + R G  VHA    S F  +  V + LV MY +CG   NAR 
Sbjct: 142 RPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQ 201

Query: 162 VFDSIK---LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           VFD ++   + + VSW ++++AY + G    AM++FE+                      
Sbjct: 202 VFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKMFER---------------------- 239

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
                  + +R + V +V+      ++ ACA+      GKQ+HG  +  G    +F+ NA
Sbjct: 240 ---MTEDLGIRPDAVSLVN------VLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNA 290

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           +VDMYAKC  +  A  +F RM+ KDVVSW +++ G +Q G+ ++ L L++++    ++ N
Sbjct: 291 VVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELN 350

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
            VT+  +I   +  GL  +   +F+ M+   G  P++     LL   + +G L
Sbjct: 351 VVTWSAVIAGYAQRGLGFEALDVFRQMLL-CGSEPNVVTLVSLLSGCASAGTL 402



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 105/220 (47%), Gaps = 7/220 (3%)

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
            +F W  L+   V      D    +  M+R G    D      ++ AC        G  +
Sbjct: 109 TVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWR-PDHYTFPFVLKACGEIPSFRCGASV 167

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK---DVVSWTSIIVGTAQH 317
           H +V A G+E  +F+ N +V MY +C     A+ +F  MR +   D+VSW SI+    Q 
Sbjct: 168 HAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQG 227

Query: 318 GQAEETLALYDEMV-SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           G +   + +++ M    G++P+ V+ V ++ AC+ VG   +G+++    +   G+   + 
Sbjct: 228 GDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRS-GLFEDVF 286

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
               ++D+ ++ G ++EA  + + M  + D  +W A+++ 
Sbjct: 287 VGNAVVDMYAKCGMMEEANKVFERMKVK-DVVSWNAMVTG 325


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 231/633 (36%), Positives = 352/633 (55%), Gaps = 76/633 (12%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   ++ GL +   + N ++D Y KC +++ A+ + E M  +D VSW +++T Y+Q 
Sbjct: 251 KQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQI 310

Query: 83  NLPQKTISIFSTML--------------------------ALDKL--------QPDHFVF 108
                 + +F  +                           ALD          +P+    
Sbjct: 311 GRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTL 370

Query: 109 ASLVKACGSLGATRLGKQVHACFVLSPFC--------DDDVVKSSLVDMYAKCGLPNNAR 160
            SL+  C   G    GK+ H C  +            DD +V ++L+DMY+KC  P  AR
Sbjct: 371 VSLLSGCALAGTLLHGKETH-CHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAAR 429

Query: 161 AVFDSI--KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A+FD I  K ++ V+WT ++   A+ G   +A+E+F Q               ++Q  N 
Sbjct: 430 AMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQ---------------MLQPDNF 474

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC-LFISN 277
           +               + +   +S  + ACA    L  G+QIH  V+   +ES  LF++N
Sbjct: 475 V---------------MPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVAN 519

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
            ++DMY+K  D+ AA+ +F  M +++ VSWTS++ G   HG+ EE L ++ EM   G+ P
Sbjct: 520 CLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVP 579

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           + VTFV ++YACSH G+V +G   F  M +D+G+ P  +HY C++DLLSR+G LDEA  L
Sbjct: 580 DGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMEL 639

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           I+ MP +P    W ALLSAC+ + N E+G   AN LL L+  +  SY LLSN+YA+A  W
Sbjct: 640 IRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLSNIYANARCW 699

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
           + V+++R LM    +KK PG S+++  KG+  F+AG+ SHP+  +I++LL +L   +K  
Sbjct: 700 KDVARIRYLMKNTGIKKRPGCSWVQGRKGTATFFAGDWSHPMSQQIYDLLRDLMQRIKAL 759

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GYVPD    LHD++ +EK   L  HSE+LA+AYG+L + PG  +R+ KNLR CGDCH   
Sbjct: 760 GYVPDNRFALHDVDDEEKGDLLSEHSEKLALAYGILTTAPGAPIRITKNLRACGDCHSAF 819

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             IS I + EI+VRD++R+HHFK+G CSC  +W
Sbjct: 820 TYISIIIEHEIIVRDSSRFHHFKNGSCSCRGYW 852



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 160/347 (46%), Gaps = 34/347 (9%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVS--WASILTA 78
           + + +H Q++  GL      P  +I  Y   +    A  +L  +    H    W  ++  
Sbjct: 44  SAELIHQQLLVQGLPHD---PTHIISMYLTFNSPAKALSVLRRLHPSSHTVFWWNQLIRR 100

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
                  +  + ++  M  L   +PDH+ F  ++KACG + + R G  VHA    S F  
Sbjct: 101 SVHLGFLEDVLQLYRRMQRLG-WRPDHYTFPFVLKACGEIPSFRCGASVHAVVFASGFEW 159

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           +  V + LV MY +CG   NAR VFD ++ +                             
Sbjct: 160 NVFVGNGLVSMYGRCGAWENARQVFDEMRERG---------------------------- 191

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
           V +L  W ++V+  +Q  + I A   F  M  +     D + L +++ ACA+      GK
Sbjct: 192 VGDLVSWNSIVAAYMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGK 251

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           Q+HG  +  G    +F+ NA+VDMYAKC  +  A  +F RM+ KDVVSW +++ G +Q G
Sbjct: 252 QVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIG 311

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           + ++ L L++++    ++ N VT+  +I   +  GL  +   +F+ M
Sbjct: 312 RFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM 358


>gi|115434844|ref|NP_001042180.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|11034538|dbj|BAB17062.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113531711|dbj|BAF04094.1| Os01g0176300 [Oryza sativa Japonica Group]
 gi|125569234|gb|EAZ10749.1| hypothetical protein OsJ_00586 [Oryza sativa Japonica Group]
          Length = 665

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/541 (39%), Positives = 335/541 (61%), Gaps = 2/541 (0%)

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V W ++++ +N++   + +   F  M+    +      + S++ ACG      LG QVH 
Sbjct: 127 VMWNALISGHNRSGRFELSCCSFVDMVRASAMAT-AVTYVSVLSACGKGKDLLLGMQVHK 185

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + S    D  V+++LVDMYA+CG  + A  +F+ +++++  SWT+++S   RSG+   
Sbjct: 186 RVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDR 245

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A ++F+  P R+   WTA++ G VQ     DA  +F  M+   V   D   + S+V ACA
Sbjct: 246 ARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVR-ADEFTMVSVVTACA 304

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LE G+     +  LG +  +F+ NA++DMY+KC  I  A D+F  M  +D  +WT+
Sbjct: 305 QLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCGSIERALDVFKDMHNRDKFTWTA 364

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           II+G A +G+ EE + ++  M+ A   P+EVTFVG++ AC+H GLV KGR+ F SM E Y
Sbjct: 365 IILGLAVNGRGEEAIDMFYRMLRALQTPDEVTFVGVLTACTHAGLVDKGREFFLSMTEAY 424

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            I+P++ HY CL+D+L R+G L EA + I  MP +P+   W  LL++C+ + N+E+G   
Sbjct: 425 NISPTVVHYGCLIDVLGRAGKLKEALDTIDKMPMKPNSTIWGTLLASCRVYGNSEIGELA 484

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  LL L P++ ++YILLSN+YA +  W+ V ++R+++    +KKEPG S IE     H 
Sbjct: 485 AERLLELDPDNSTAYILLSNMYAKSNRWKDVRRIRQIIMEKGIKKEPGCSMIEMNGIIHE 544

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F A + SHP+  EI+  L  +  +++  GYVPD + VL ++ ++EK++ L+WHSE+LAV 
Sbjct: 545 FVAADRSHPMNKEIYSKLENVLTDLRNAGYVPDVTEVLVEVTEEEKQKVLYWHSEKLAVT 604

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + LL S    ++R+VKNLR+C DCH  +K+IS++  RE++VRD TR+HHF+ G CSC D+
Sbjct: 605 FALLTSESNVIIRIVKNLRMCLDCHNAIKLISKLYGREVIVRDRTRFHHFRHGSCSCKDY 664

Query: 610 W 610
           W
Sbjct: 665 W 665



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 98/220 (44%), Gaps = 32/220 (14%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-DL----------- 53
           Y+  L  C + +  L    +H ++++ G+     + N L+D Y +C D+           
Sbjct: 164 YVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECGDMDAAWVLFEGMQ 223

Query: 54  -------------------VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFST 94
                              V  A  L + MP+RD ++W +++  Y Q    +  +  F  
Sbjct: 224 MRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQVGRFRDALETFRY 283

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
           M  + K++ D F   S+V AC  LGA   G+             D  V ++L+DMY+KCG
Sbjct: 284 M-QICKVRADEFTMVSVVTACAQLGALETGEWARIYMGRLGIKMDVFVGNALIDMYSKCG 342

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
               A  VF  +  ++  +WTA++   A +GR ++A+++F
Sbjct: 343 SIERALDVFKDMHNRDKFTWTAIILGLAVNGRGEEAIDMF 382



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 180/430 (41%), Gaps = 80/430 (18%)

Query: 57  AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116
           A  LL+ +P R   + +S ++ +      ++ ++ +  MLA    +PD + F SL+KA  
Sbjct: 8   ARSLLDGIPHRRGRAASSSVSGHG----AEEAVAGYVRMLA-GGARPDAYTFPSLLKAAA 62

Query: 117 SLGATRLGKQ-----VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           +     +        +HA  V      +    SSL+ MYA  G    ARAV ++  L   
Sbjct: 63  AARGAAVAAASVGGAIHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATG 122

Query: 172 ----VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
               V W A++S + RSGR       FE +                          SF++
Sbjct: 123 GGAPVMWNALISGHNRSGR-------FELSCC------------------------SFVD 151

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M R    +   +   S++ AC     L LG Q+H  V+  G      + NA+VDMYA+C 
Sbjct: 152 MVRASA-MATAVTYVSVLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMYAECG 210

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEM---------------VS 332
           D+ AA  +F  M+ + + SWTS+I G  + GQ +    L+D M               V 
Sbjct: 211 DMDAAWVLFEGMQMRSMASWTSVISGLVRSGQVDRARDLFDHMPERDTIAWTAMIDGYVQ 270

Query: 333 AG----------------VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
            G                V+ +E T V ++ AC+ +G +  G +  +  +   GI   + 
Sbjct: 271 VGRFRDALETFRYMQICKVRADEFTMVSVVTACAQLGALETG-EWARIYMGRLGIKMDVF 329

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA-LLSACKHHRNTEMGTRVANHLLS 435
               L+D+ S+ G ++ A ++ K M    D+ TW A +L    + R  E        L +
Sbjct: 330 VGNALIDMYSKCGSIERALDVFKDM-HNRDKFTWTAIILGLAVNGRGEEAIDMFYRMLRA 388

Query: 436 LKPEDPSSYI 445
           L+  D  +++
Sbjct: 389 LQTPDEVTFV 398



 Score = 45.8 bits (107), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 49/226 (21%), Positives = 97/226 (42%), Gaps = 21/226 (9%)

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM----RRKDVVSWTSIIVGTA 315
           IH  V+  G ES    +++++ MYA   D  AA+ +             V W ++I G  
Sbjct: 78  IHAHVVKFGMESNAHAASSLIVMYAARGDGAAARAVLEAACLATGGGAPVMWNALISGHN 137

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM-----IEDYG 370
           + G+ E +   + +MV A      VT+V ++ AC      GKG+ L   M     + + G
Sbjct: 138 RSGRFELSCCSFVDMVRASAMATAVTYVSVLSAC------GKGKDLLLGMQVHKRVLESG 191

Query: 371 ITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVA 430
           + P  +    L+D+ +  G +D A  L + M       +W +++S        +    + 
Sbjct: 192 VLPDQRVENALVDMYAECGDMDAAWVLFEGMQMRS-MASWTSVISGLVRSGQVDRARDLF 250

Query: 431 NHLLSLKPE-DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKE 475
           +H+    PE D  ++  + + Y     ++   +  + M + +V+ +
Sbjct: 251 DHM----PERDTIAWTAMIDGYVQVGRFRDALETFRYMQICKVRAD 292


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 212/560 (37%), Positives = 335/560 (59%), Gaps = 3/560 (0%)

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
           +L+ YA  +  ++   +   + +++   + +  P+ +   +   L    L PD+     L
Sbjct: 65  NLLHYAIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFG-LLPDNITHPFL 123

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           VKAC  L    +G Q H   +   F  D  V++SLV MYA  G  N AR+VF  +   + 
Sbjct: 124 VKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDV 183

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           VSWT M++ Y R G  K A E+F++ P RNL  W+ ++SG  ++     A  +F  ++ E
Sbjct: 184 VSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAE 243

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
           GV + +  V+  ++ +CA+   L +G++ H  V+       L +  A+VDMYA+C ++  
Sbjct: 244 GV-VANETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEK 302

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           A  +F ++  KDV+ WT++I G A HG AE+ L  + EM   G  P ++TF  ++ ACSH
Sbjct: 303 AVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSH 362

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
            G+V +G ++F+SM  D+G+ P L+HY C++DLL R+G L +AE  +  MP +P+ P W 
Sbjct: 363 AGMVERGLEIFESMKRDHGVEPRLEHYGCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWR 422

Query: 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
           ALL AC+ H+N E+G RV   LL ++PE    Y+LLSN+YA A  W+ V+ +R++M    
Sbjct: 423 ALLGACRIHKNVEVGERVGKILLEMQPEYSGHYVLLSNIYARANKWKDVTVMRQMMKDKG 482

Query: 472 VKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELD-AEMKRRGYVPDTSSVLHDM 530
           V+K PGYS IE     H F  G+ +HP  ++I  +  ++   ++K  GYV +T+  + D+
Sbjct: 483 VRKPPGYSLIEIDGKVHEFTIGDKTHPEIEKIERIWEDIILPKIKLAGYVGNTAETMFDI 542

Query: 531 EQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVV 590
           +++EKE  L  HSE+LA+AYG++K    T +R+VKNLRVC DCH   K+IS++ + E++V
Sbjct: 543 DEEEKEGALHRHSEKLAIAYGIMKIRAPTPIRIVKNLRVCEDCHTATKLISKVFEVELIV 602

Query: 591 RDATRYHHFKDGKCSCNDFW 610
           RD  R+HHFK+G CSC D+W
Sbjct: 603 RDRNRFHHFKEGTCSCMDYW 622



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/286 (22%), Positives = 129/286 (45%), Gaps = 47/286 (16%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           +I  Y +C   + A  L + MP+R+ V+W+++++ Y + N  +K +  F  + A + +  
Sbjct: 189 MIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQA-EGVVA 247

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           +  V   ++ +C  LGA  +G++ H   + +    + ++ +++VDMYA+CG    A  VF
Sbjct: 248 NETVMVGVISSCAHLGALAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVF 307

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           + +  K+ + WTA+++  A  G  + A             LW                  
Sbjct: 308 EQLPEKDVLCWTALIAGLAMHGYAEKA-------------LWY----------------- 337

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI-------HGLVIALGYESCLFIS 276
            F EM ++G    D +  ++++ AC++  ++E G +I       HG+   L +  C+   
Sbjct: 338 -FSEMAKKGFVPRD-ITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHYGCM--- 392

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRK-DVVSWTSIIVGTAQHGQAE 321
              VD+  +   +  A+    +M  K +   W +++     H   E
Sbjct: 393 ---VDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVE 435



 Score = 45.8 bits (107), Expect = 0.060,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 61/148 (41%), Gaps = 13/148 (8%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   ++D Y +C  V+ A  + E++P++D + W +++         +K +  FS M A  
Sbjct: 286 LGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEM-AKK 344

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSL------VDMYAKC 153
              P    F +++ AC   G    G +     +      D  V+  L      VD+  + 
Sbjct: 345 GFVPRDITFTAVLTACSHAGMVERGLE-----IFESMKRDHGVEPRLEHYGCMVDLLGRA 399

Query: 154 GLPNNARAVFDSIKLK-NSVSWTAMLSA 180
           G    A      + +K N+  W A+L A
Sbjct: 400 GKLRKAEKFVLKMPVKPNAPIWRALLGA 427


>gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 705

 Score =  429 bits (1104), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/598 (37%), Positives = 342/598 (57%), Gaps = 45/598 (7%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGK-CDLVQYAHHLL------EEMPQRDHVSWASILT 77
           +H+ I+KLGLH + PL  T   A     + V YA  +L         P  D   + +++ 
Sbjct: 141 IHSLILKLGLH-HNPLVLTKFAATSSHFNAVHYASSVLFPNDQTTPPPSHDAFLFNTLIR 199

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
           A+ Q    +     F   +    + P+ F F  ++KAC  +    LG  VHA  V   F 
Sbjct: 200 AFAQTTHSKPHALRFYNTMRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFE 259

Query: 138 DDDVVKSSLVDMYAKC-----GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
           +D  V+++LV MY  C       P +A+ VFD   +K+SV+W+AM+  YAR+G    A+ 
Sbjct: 260 EDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSARAVT 319

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F                                EM+  GV   D + + S++ ACA+  
Sbjct: 320 LFR-------------------------------EMQVTGV-CPDEITMVSVLSACADLG 347

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
            LELGK +   +        + + NA++DM+AKC D+  A  +F  M+ + +VSWTS+IV
Sbjct: 348 ALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIV 407

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G A HG+  E + ++DEM+  GV P++V F+G++ ACSH GLV KG   F +M   + I 
Sbjct: 408 GLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYFNTMENMFSIV 467

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
           P ++HY C++D+LSR+G ++EA   ++AMP EP++  W ++++AC      ++G  VA  
Sbjct: 468 PKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESVAKE 527

Query: 433 LLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYA 492
           L+  +P   S+Y+LLSN+YA    W+  +KVR++M V  ++K PG + IE     + F A
Sbjct: 528 LIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVA 587

Query: 493 GETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGL 552
           G+ SH    EI+E++ E+  E+KR GYVP TS VL D+++++KE  L+ HSE+LA+A+ L
Sbjct: 588 GDKSHDQYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFAL 647

Query: 553 LKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           L + PGT +R+VKNLRVC DCH   K IS++  REIVVRD  R+HHFK+G CSC DFW
Sbjct: 648 LSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 705



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 142/329 (43%), Gaps = 54/329 (16%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-----DLVQYAHHLLEEM 64
           L+ CA          +HA ++K G  +   + NTL+  Y  C          A  + +E 
Sbjct: 234 LKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHMYCCCCQDGSSGPVSAKKVFDES 293

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           P +D V+W++++  Y +A    + +++F  M  +  + PD     S++ AC  LGA  LG
Sbjct: 294 PVKDSVTWSAMIGGYARAGNSARAVTLFREM-QVTGVCPDEITMVSVLSACADLGALELG 352

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           K + +            + ++L+DM+AKCG  + A  VF  +K++  VSWT+M+   A  
Sbjct: 353 KWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVRTIVSWTSMIVGLAMH 412

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           GR  +A+ +F+                               EM  +GVD  D +    +
Sbjct: 413 GRGLEAVLVFD-------------------------------EMMEQGVD-PDDVAFIGV 440

Query: 245 VGACANFAVLELG-------KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297
           + AC++  +++ G       + +  +V  + +  C+      VDM ++   +  A +   
Sbjct: 441 LSACSHSGLVDKGHYYFNTMENMFSIVPKIEHYGCM------VDMLSRAGRVNEALEFVR 494

Query: 298 RMR-RKDVVSWTSIIVGTAQHGQAEETLA 325
            M    + V W SI+  TA H + E  L 
Sbjct: 495 AMPVEPNQVIWRSIV--TACHARGELKLG 521


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/588 (36%), Positives = 335/588 (56%), Gaps = 32/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LH   ++        +   L+D Y KC  + YA  + + M  R+ VSW++++  Y  +
Sbjct: 230 KALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXS 289

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           +  ++ + +F  M+  D + P      S+++AC  L     G+++H   +      D ++
Sbjct: 290 DCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILL 349

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+ MYAKC                               G   DA+  F+    ++ 
Sbjct: 350 GNTLLSMYAKC-------------------------------GVIDDAIRFFDXMNPKDS 378

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             ++A+VSG VQ+ N   A   F  M+  G+D  D   +  ++ AC++ A L+ G   HG
Sbjct: 379 VSFSAIVSGCVQNGNAAVALSIFRMMQLSGID-PDLTTMLGVLPACSHLAALQHGFCSHG 437

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +I  G+ +   I NA++DMY+KC  I  A+++F RM R D+VSW ++I+G   HG   E
Sbjct: 438 YLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGME 497

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L+ ++++ G+KP+++TF+ L+ +CSH GLV +GR  F +M  D+ I P ++H  C++
Sbjct: 498 ALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMV 557

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+L R+G +DEA + I+ MPFEPD   W+ALLSAC+ H+N E+G  V+  + SL PE   
Sbjct: 558 DILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPESTG 617

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +++LLSN+Y++A  W   + +R       +KK PG S+IE     H F  G+ SH    +
Sbjct: 618 NFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIEINGIVHAFVGGDQSHLQLSQ 677

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I   L EL  EMKR GY  + S V  D+E++EKE+ L +HSE+LA+A+G+L    G  + 
Sbjct: 678 INRKLEELLVEMKRLGYQAECSFVFQDVEEEEKEQILLYHSEKLAIAFGILNLKAGRPIL 737

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V KNLRVCGDCH  +K ++ ITKREI VRDA R+HHFK+G C+C DFW
Sbjct: 738 VTKNLRVCGDCHAAIKFMTVITKREITVRDANRFHHFKNGTCNCGDFW 785



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/459 (24%), Positives = 210/459 (45%), Gaps = 39/459 (8%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           ++YLH L  C + +     K +H   +K   +    + + L   Y  C+ V  A  L +E
Sbjct: 9   NNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDE 68

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           +P    + W  I+ AY         I ++ +ML L  ++P+ + +  ++KAC  L A   
Sbjct: 69  IPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLG-VRPNKYTYPFVLKACSGLLAIED 127

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G ++H+   +     D  V ++LVD YAKCG+   A+ +F S+  ++ V+W AM++  + 
Sbjct: 128 GVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSL 187

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            G   DA+++  Q     +   ++ + G++ +  E  A                      
Sbjct: 188 YGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKA---------------------- 225

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
                     L  GK +HG  +   +++ + +   ++DMYAKC  ++ A+ IF  M  ++
Sbjct: 226 ----------LGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRN 275

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMV-SAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
            VSW+++I G       +E L L+D+M+    + P  VT   ++ AC+ +  + +GRKL 
Sbjct: 276 EVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLH 335

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
             +I+  G    +     LL + ++ G +D+A      M    D  +++A++S C  + N
Sbjct: 336 CYIIK-LGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMN-PKDSVSFSAIVSGCVQNGN 393

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASA--AMWQH 459
             +   +   ++ L   DP    +L  + A +  A  QH
Sbjct: 394 AAVALSIF-RMMQLSGIDPDLTTMLGVLPACSHLAALQH 431



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 190/437 (43%), Gaps = 46/437 (10%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H+     GL     +   L+D Y KC ++  A  L   M  RD V+W +++   +   L
Sbjct: 131 IHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGL 190

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
               + +   M   + + P+      ++   G   A   GK +H   V   F +  VV +
Sbjct: 191 CDDAVQLIMQMQE-EGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNGVVVGT 249

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
            L+DMYAKC                       +L  YAR        +IF+   VRN   
Sbjct: 250 GLLDMYAKC---------------------QCLL--YAR--------KIFDVMGVRNEVS 278

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W+A++ G V S    +A   F +M  +      P+ L S++ ACA    L  G+++H  +
Sbjct: 279 WSAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYI 338

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           I LG    + + N ++ MYAKC  I  A   F  M  KD VS+++I+ G  Q+G A   L
Sbjct: 339 IKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVAL 398

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHV-----GLVGKGRKLFKSMIEDYGITPSLQHYT 379
           +++  M  +G+ P+  T +G++ ACSH+     G    G  + +    D  I  +     
Sbjct: 399 SIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTLICNA----- 453

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS--LK 437
            L+D+ S+ G +  A  +   M    D  +W A++     H        + + LL+  LK
Sbjct: 454 -LIDMYSKCGKISFAREVFNRMD-RHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLK 511

Query: 438 PEDPSSYILLSNVYASA 454
           P+D +   LLS+   S 
Sbjct: 512 PDDITFICLLSSCSHSG 528



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 155/362 (42%), Gaps = 41/362 (11%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           +  L++AC    +    K++H  F+ +    D  V   L  +Y  C     AR +FD I 
Sbjct: 11  YLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIP 70

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
             + + W  ++ AYA +G        F+ A                     ID ++S + 
Sbjct: 71  NPSVILWNQIIRAYAWNGP-------FDGA---------------------IDLYHSMLH 102

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           +         P VL     AC+    +E G +IH      G ES +F+  A+VD YAKC 
Sbjct: 103 LGVRPNKYTYPFVLK----ACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCG 158

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            ++ A+ +F  M  +DVV+W ++I G + +G  ++ + L  +M   G+ PN  T VG++ 
Sbjct: 159 ILVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLP 218

Query: 348 ACSHVGLVGKGRKLFKSMIE---DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE 404
                  +G G+ L    +    D G+       T LLD+ ++   L  A  +   M   
Sbjct: 219 TVGEAKALGHGKALHGYCVRRSFDNGVVVG----TGLLDMYAKCQCLLYARKIFDVMGVR 274

Query: 405 PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVR 464
            +E +W+A++         +    + + ++     DP+  + L +V  + A    +S+ R
Sbjct: 275 -NEVSWSAMIGGYVXSDCMKEALELFDQMILKDAMDPTP-VTLGSVLRACAKLTDLSRGR 332

Query: 465 KL 466
           KL
Sbjct: 333 KL 334



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 133/298 (44%), Gaps = 37/298 (12%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR CA+       + LH  IIKLG      L NTL+  Y KC ++  A    + M  +D 
Sbjct: 319 LRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDS 378

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS+++I++   Q       +SIF  M+ L  + PD      ++ AC  L A + G   H 
Sbjct: 379 VSFSAIVSGCVQNGNAAVALSIFR-MMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHG 437

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             ++  F  D ++ ++L+DMY+KCG  + AR VF+ +   + VSW AM+  Y   G   +
Sbjct: 438 YLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGME 497

Query: 190 AMEIFEQAPVRNL---------FLWTALVSGLV-QSRNEIDAF---YSFIEMRREGVDIV 236
           A+ +F       L          L +   SGLV + R   DA    +S +      + +V
Sbjct: 498 ALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMV 557

Query: 237 DPL-----------------------VLSSIVGACANFAVLELGKQIHGLVIALGYES 271
           D L                       + S+++ AC     +ELG+++   + +LG ES
Sbjct: 558 DILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKNIELGEEVSKKIQSLGPES 615


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/576 (37%), Positives = 344/576 (59%), Gaps = 43/576 (7%)

Query: 42  NTLIDAYGKCDL-VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDK 100
           NTL+ A G+    +  A  L + MP+RDH SW++I++A+ +   P+  ++I+  ML    
Sbjct: 96  NTLVAALGRSPRGLASARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRMLR--- 152

Query: 101 LQP------DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
            +P      + F  +S + A  +    R G+++H C V+    D D              
Sbjct: 153 -EPGGSGADNEFTASSALAAATAARCARAGRELH-CHVVRRGIDAD-------------- 196

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
                           +V W+A+   YA+ GR  DA  +F++ PVR++  WTA++     
Sbjct: 197 ----------------AVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFD 240

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF 274
           +  + + F  F+ M R G+ + +    + ++ ACA F   +LGKQ+HG +         F
Sbjct: 241 AGRDGEGFRLFVRMMRSGI-LPNEFTYAGVLRACAEFTSEKLGKQVHGRMAKSRTGDSCF 299

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
             +A+V MY+K  D+  A  +F  M + D+VSWT++I G AQ+GQ +E L  +D ++S+G
Sbjct: 300 AGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDMLLSSG 359

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
            +P+ VTFVG++ AC+H GLV KG  +F S+ + YGI  +  HY C++DLLSRSG  + A
Sbjct: 360 FRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSGLFERA 419

Query: 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454
           E++I  MP +P++  WA+LL  C+ H+N  +    A  L  ++PE+P++Y+ L+N+YAS 
Sbjct: 420 EDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEPENPATYVTLANIYASV 479

Query: 455 AMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEM 514
            ++  V  +R+ M +  + K P  S+IE G   H+F  G+ SHP  +EI+ LL +L  +M
Sbjct: 480 GLFDEVENMRRTMELRGITKMPASSWIEVGTRVHVFLVGDKSHPQAEEIYALLKKLYVKM 539

Query: 515 KRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCH 574
           +  GYV DT  VLHD+E ++K++ + +HSERLAVA+G++ +  G+ ++V KNLR+CGDCH
Sbjct: 540 REEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGSPIKVFKNLRICGDCH 599

Query: 575 IVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             +K+IS+I +REI+VRD+ R+HHFK+G CSC D+W
Sbjct: 600 TTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/609 (36%), Positives = 350/609 (57%), Gaps = 40/609 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ C+      + K  H Q    G      + + LI  Y  C  ++ A  + +E+P+RD 
Sbjct: 83  IKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDI 142

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVF------ASLVKACGSLGATRL 123
           VSW S++  Y+        +S+F  +L +D+   D  +F       S++ AC  + A  L
Sbjct: 143 VSWTSMIRGYDLNGNALDAVSLFKDLL-VDENDDDDAMFLDSMGLVSVISACSRVPAKGL 201

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN--NARAVFDSIKLKNSVSWTAMLSAY 181
            + +H+  +   F     V ++L+D YAK G      AR +FD I  K+ VS+ +++S Y
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVY 261

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
           A+SG   +A E+F +           LV      +N++  F              + + L
Sbjct: 262 AQSGMSNEAFEVFRR-----------LV------KNKVVTF--------------NAITL 290

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           S+++ A ++   L +GK IH  VI +G E  + +  +I+DMY KC  +  A+  F RM+ 
Sbjct: 291 STVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKN 350

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           K+V SWT++I G   HG A + L L+  M+ +GV+PN +TFV ++ ACSH GL  +G + 
Sbjct: 351 KNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRW 410

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F +M   +G+ P L+HY C++DLL R+G L +A +LI+ M  +PD   W++LL+AC+ H+
Sbjct: 411 FNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHK 470

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           N E+       L  L   +   Y+LLS++YA A  W+ V +VR +M    + K PG+S +
Sbjct: 471 NVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLL 530

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E     H+F  G+  HP +++I+E L EL+ ++   GYV +TSSV HD++++EKE  L  
Sbjct: 531 ELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRV 590

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSE+LA+A+G++ +VPG+ + VVKNLRVC DCH V+K+IS+I  RE VVRDA R+HHFKD
Sbjct: 591 HSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKD 650

Query: 602 GKCSCNDFW 610
           G CSC D+W
Sbjct: 651 GGCSCGDYW 659



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 166/360 (46%), Gaps = 32/360 (8%)

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           + + D  SW S++    ++    + +  FS+M  L  L P    F   +KAC SL     
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKL-SLYPTRSSFPCAIKACSSLFDIFS 94

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           GKQ H    +  +  D  V S+L+ MY+ CG   +AR VFD I  ++ VSWT+M+  Y  
Sbjct: 95  GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDL 154

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           +G   DA+ +F+                LV   ++ DA +            +D + L S
Sbjct: 155 NGNALDAVSLFKDL--------------LVDENDDDDAMF------------LDSMGLVS 188

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD--IIAAKDIFGRMRR 301
           ++ AC+      L + IH  VI  G++  + + N ++D YAK  +  +  A+ IF ++  
Sbjct: 189 VISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD 248

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRK 360
           KD VS+ SI+   AQ G + E   ++  +V   V   N +T   ++ A SH G +  G+ 
Sbjct: 249 KDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKC 308

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           +   +I   G+   +   T ++D+  + G ++ A      M    +  +W A+++    H
Sbjct: 309 IHDQVIR-MGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMH 366



 Score = 45.4 bits (106), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 3/155 (1%)

Query: 295 IFGR-MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
           +F R + + DV SW S+I   A+ G + E L  +  M    + P   +F   I ACS + 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
            +  G++  +     +G    +   + L+ + S  G L++A  +   +P + D  +W ++
Sbjct: 91  DIFSGKQTHQQAFV-FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRDIVSWTSM 148

Query: 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
           +     + N      +   LL  + +D  +  L S
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDS 183


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/634 (35%), Positives = 351/634 (55%), Gaps = 66/634 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLH--------------QYGPLPN------------- 42
           L+ CA+ +     + +H  ++KLG                Q G L +             
Sbjct: 73  LKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDV 132

Query: 43  ----TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                LI  Y     ++ A  + +E+P +D VSW ++++ Y +    ++ + +F  M+  
Sbjct: 133 VSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKT 192

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           + ++PD     +++ AC    +  LG+QVH+      F  +  + ++L+D+Y+KCG    
Sbjct: 193 N-VRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVET 251

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A  +F+ +  K+ VSW  ++  Y      K+A+ +F+                       
Sbjct: 252 ACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQ----------------------- 288

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA--LGYESCLFIS 276
                   EM R G    D + + SI+ ACA+   +++G+ IH  +        +   + 
Sbjct: 289 --------EMLRSGESPND-VTIVSILPACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLR 339

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
            +++DMYAKC DI AA  +F  M  K + SW ++I G A HG+A     L+  M   G++
Sbjct: 340 TSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIFGFAMHGRANAGFDLFSRMRKNGIE 399

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
           P+++TFVGL+ ACSH G +  GR +FKSM +DY ITP L+HY C++DLL  SG   EA+ 
Sbjct: 400 PDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDITPKLEHYGCMIDLLGHSGLFKEAKE 459

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           +IK MP EPD   W +LL AC+ H N E+    A +L+ ++PE+P SY+LLSN+YA+A  
Sbjct: 460 MIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARNLMKVEPENPGSYVLLSNIYATAGE 519

Query: 457 WQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKR 516
           W  V+KVR L++   +KK PG S IE     H F  G+  HP   EI+ +L E++A ++ 
Sbjct: 520 WDEVAKVRALLNGKGMKKVPGCSSIEIDSEVHEFIVGDKLHPRNREIYGMLEEMEALLEE 579

Query: 517 RGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIV 576
            G+VPDTS VL +ME++ KE  L  HSE+LA+A+GL+ + PGT L +VKNLRVC +CH  
Sbjct: 580 AGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEA 639

Query: 577 MKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            K++S+I KREI+ RD TR+HHF+DG CSCNDFW
Sbjct: 640 TKLVSKIYKREIIARDRTRFHHFRDGVCSCNDFW 673



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/415 (28%), Positives = 211/415 (50%), Gaps = 41/415 (9%)

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
           D   YA  +   + + + + W ++L  Y  ++ P   + ++  M++L  L P+ + F  L
Sbjct: 14  DGFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLG-LLPNSYTFPFL 72

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           +K+C    A   G+Q+H   +   +  D  V +SL+ MYA+ G   +A  VFD    ++ 
Sbjct: 73  LKSCAKSKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDV 132

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           VS+TA+++ YA SG  + A E+F++ PV+++  W A++SG  ++ +  +A   F EM + 
Sbjct: 133 VSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKT 192

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
            V   D   + +++ ACA    +ELG+Q+H  +   G+ S L I NA++D+Y+KC  +  
Sbjct: 193 NVR-PDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVET 251

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           A  +F  +  KDVVSW ++I G       +E L L+ EM+ +G  PN+VT V ++ AC+H
Sbjct: 252 ACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAH 311

Query: 352 VGLVGKGRKL---FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM------- 401
           +G +  GR +       ++D    PSL+  T L+D+ ++ G ++ A  +  +M       
Sbjct: 312 LGAIDIGRWIHVYIDKKLKDVTNAPSLR--TSLIDMYAKCGDIEAAHQVFNSMLHKSLSS 369

Query: 402 ---------------------------PFEPDEPTWAALLSACKHHRNTEMGTRV 429
                                        EPD+ T+  LLSAC H    ++G  +
Sbjct: 370 WNAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHI 424


>gi|326532272|dbj|BAK05065.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 889

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/606 (36%), Positives = 343/606 (56%), Gaps = 14/606 (2%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEM 64
           Y   L  CA+       K LHAQ+I+  L    P + + +++ Y KC   + A  +   +
Sbjct: 297 YTSSLTACAKLSSLGWGKQLHAQVIR-SLPCIDPYVASAMVELYAKCGCFKEARRVFSSL 355

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
             R+ VSW  ++  + Q     +++ +F+ M A + +  D F  A+++  C +     L 
Sbjct: 356 RDRNTVSWTVLIGGFLQYGCFSESLELFNQMRA-ELMTVDQFALATIISGCSNRMDMCLA 414

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           +Q+H+  + S      V+ +SL+ MYAKCG   NA ++F S++ ++ VSWT ML+AY++ 
Sbjct: 415 RQLHSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFSSMEERDIVSWTGMLTAYSQV 474

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G    A E F+    RN+  W A++   +Q   E D    +  M  E   I D +   ++
Sbjct: 475 GNIGKAREFFDGMSTRNVITWNAMLGAYIQHGAEEDGLKMYSAMLTEKDVIPDWVTYVTL 534

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
              CA+    +LG QI G  + +G      + NA++ MY+KC  I  A+ IF  + RKD+
Sbjct: 535 FRGCADMGANKLGDQITGHTVKVGLILDTSVMNAVITMYSKCGRISEARKIFDFLSRKDL 594

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           VSW ++I G +QHG  ++ + ++D+M+  G KP+ +++V ++ +CSH GLV +G+  F  
Sbjct: 595 VSWNAMITGYSQHGMGKQAIEIFDDMLKKGAKPDYISYVAVLSSCSHSGLVQEGKFYFDM 654

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           +  D+ ++P L+H++C++DLL+R+G+L EA+NLI  MP +P    W ALLSACK H N E
Sbjct: 655 LKRDHNVSPGLEHFSCMVDLLARAGNLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNE 714

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +    A HL  L   D   Y+LL+ +YA A      ++VRKLM    +KK PGYS++E  
Sbjct: 715 LAELAAKHLFDLDSPDSGGYMLLAKIYADAGKSVDSAQVRKLMRDKGIKKNPGYSWMEVK 774

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
              H+F A + SHP    I E L EL  ++ + GYV           + E  R    HSE
Sbjct: 775 NKVHVFKAEDVSHPQVIAIREKLDELMEKIAQLGYV-----------RTESLRSEIHHSE 823

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           +LAVA+G++       + ++KNLR+CGDCH V+K+IS +T RE V+RDA R+HHFK G C
Sbjct: 824 KLAVAFGIMNLPAWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFKGGSC 883

Query: 605 SCNDFW 610
           SC D+W
Sbjct: 884 SCGDYW 889



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 190/377 (50%), Gaps = 7/377 (1%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +++ Y K   +  A  L   MP+RD  SW ++++ Y Q+      +  F +M      
Sbjct: 99  NIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFVSMRRSGDS 158

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P+ F F   +K+CG+LG   +  Q+        F  D  V + +VDM+ +CG  + A  
Sbjct: 159 LPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRCGAVDFASK 218

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
            F  I+        +ML+ YA+S     A+E+FE  P R++  W  +VS L QS    +A
Sbjct: 219 QFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALSQSGRAREA 278

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL--FISNAI 279
               ++M   GV + D    +S + ACA  + L  GKQ+H  VI      C+  ++++A+
Sbjct: 279 LSVAVDMHNRGVRL-DSTTYTSSLTACAKLSSLGWGKQLHAQVIR--SLPCIDPYVASAM 335

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           V++YAKC     A+ +F  +R ++ VSWT +I G  Q+G   E+L L+++M +  +  ++
Sbjct: 336 VELYAKCGCFKEARRVFSSLRDRNTVSWTVLIGGFLQYGCFSESLELFNQMRAELMTVDQ 395

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
                +I  CS+   +   R+L  S+    G T ++     L+ + ++ G+L  AE++  
Sbjct: 396 FALATIISGCSNRMDMCLARQL-HSLSLKSGHTRAVVISNSLISMYAKCGNLQNAESIFS 454

Query: 400 AMPFEPDEPTWAALLSA 416
           +M  E D  +W  +L+A
Sbjct: 455 SME-ERDIVSWTGMLTA 470



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 155/343 (45%), Gaps = 38/343 (11%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF-DSI 166
            A  +++CG+ GA    + +H   V         ++++L+  Y  CG   +AR +    I
Sbjct: 31  LADALRSCGARGALAGARALHGRLVSVGLASAVFLQNTLLHAYLSCGALPDARGLLRGDI 90

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
              N ++   M++ YA+ G   DA E+F + P R++  W  L+SG  QS   +DA  SF+
Sbjct: 91  TEPNVITHNIMMNGYAKLGSLSDAEELFGRMPRRDVTSWNTLMSGYYQSGRFLDAMESFV 150

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            MRR G  + +       + +C      E+  Q+ GL+   G++    ++  IVDM+ +C
Sbjct: 151 SMRRSGDSLPNAFTFGCAMKSCGALGWHEVALQLLGLLTKFGFQGDPDVATGIVDMFVRC 210

Query: 287 SDIIAAKDIFGRMRR-------------------------------KDVVSWTSIIVGTA 315
             +  A   F ++ R                               +DVVSW  ++   +
Sbjct: 211 GAVDFASKQFSQIERPTVFCRNSMLAGYAKSYGVDHALELFESMPERDVVSWNMMVSALS 270

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
           Q G+A E L++  +M + GV+ +  T+   + AC+ +  +G G++L   +I      P +
Sbjct: 271 QSGRAREALSVAVDMHNRGVRLDSTTYTSSLTACAKLSSLGWGKQLHAQVIRSL---PCI 327

Query: 376 QHY--TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             Y  + +++L ++ G   EA  +  ++  + +  +W  L+  
Sbjct: 328 DPYVASAMVELYAKCGCFKEARRVFSSLR-DRNTVSWTVLIGG 369


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 236/602 (39%), Positives = 333/602 (55%), Gaps = 26/602 (4%)

Query: 22  VKTLHAQIIKLGLHQYGPL------------PNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +K +HAQII    H   P             P     AY K       HHL    P    
Sbjct: 83  LKQVHAQIIT---HHNSPFQLSALASLSALSPFPTFLAYAKTIF----HHLQNPPPSL-- 133

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
             + S++ A + +  P + + ++ TML    L+PDH  +  ++KAC     T  G  VH 
Sbjct: 134 --YNSLIRALSSSKTPLEALPLYHTMLQ-SGLKPDHMTYPFVIKACNESSVTWFGLLVHT 190

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V S F  D  + SSL+ +YA       A+ +F+    ++ VSW AM+  Y +      
Sbjct: 191 HVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGH 250

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F++   R++  W  +++G        +A   F +MR  GV   +  V+S ++ ACA
Sbjct: 251 ARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMRAVGVKPTEATVVS-LLSACA 309

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +   L+ G  +H  +     E    +  A+VDMYAKC  I  A  +F  M  KDV++W +
Sbjct: 310 HLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAWNT 369

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           II G A HG  +E   L+ EM  AGV+PN++TFV ++ ACSH G+V +G+KL   M   Y
Sbjct: 370 IIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSSSY 429

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI P ++HY C++DLL+R+G L+EA  LI  MP EP+     ALL  C+ H N E+G  V
Sbjct: 430 GIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGEMV 489

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
              L++L+P     YILLSN+YA+A  W    KVR LM V  + K PG S IE     H 
Sbjct: 490 GKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMVHR 549

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRR-GYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
           F AG+ SHP  ++I+E L E+   +K   GY  DT +VL DME+++KE  L  HSE+LA+
Sbjct: 550 FVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKLAI 609

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           AYGLL       +R+VKNLRVC DCH V+K+IS++  REI+VRD  R+HHF+DG+CSC D
Sbjct: 610 AYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSCLD 669

Query: 609 FW 610
           FW
Sbjct: 670 FW 671



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 71/349 (20%), Positives = 141/349 (40%), Gaps = 66/349 (18%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   ++ C    +      +H  ++K G      + ++LI  Y     +  A  L     
Sbjct: 169 YPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCS 228

Query: 66  QRDHVSWASILTAYNQ-------------------------------ANLPQKTISIFST 94
            RD VSW +++  Y +                                  P + +++F  
Sbjct: 229 ARDVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQ 288

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
           M A+  ++P      SL+ AC  LGA   G  +H     +    + +V ++LVDMYAKCG
Sbjct: 289 MRAVG-VKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCG 347

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
             + A  VF++++ K+ ++W  +++  A  G  K+A ++F+                   
Sbjct: 348 KISLATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFK------------------- 388

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ-IHGLVIALGYESCL 273
                       EM+  GV+  D +   +I+ AC++  +++ G++ +  +  + G E  +
Sbjct: 389 ------------EMKEAGVEPND-ITFVAILSACSHAGMVDEGQKLLDCMSSSYGIEPKV 435

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ-HGQAE 321
                ++D+ A+   +  A ++ G M  +   S    ++G  + HG  E
Sbjct: 436 EHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFE 484


>gi|255545098|ref|XP_002513610.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547518|gb|EEF49013.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 660

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/628 (35%), Positives = 351/628 (55%), Gaps = 41/628 (6%)

Query: 21  TVKTLHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           T+K LH +++     ++ P +   L+  Y  C     A H+ +E+  ++ V +  ++ +Y
Sbjct: 36  TLKKLHGKVLNDQYLRWNPSVGIKLMRVYAACGEPGLARHIFDEITDKNVVFFNVMIRSY 95

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
              +L +  + ++ TM       PD + +  ++KA     +  +G Q+H   +      +
Sbjct: 96  VNNHLYKDALLVYKTMYT-QGFVPDMYTYPCVLKASSRSDSLWVGLQIHGAVLKIGLDLN 154

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP- 198
             V + L+ MY KC     A+ V D I  ++ VSW +M+S YA++GR  DA+E+  +   
Sbjct: 155 LYVGNGLIAMYGKCKSLKEAQQVLDEIPCRDVVSWNSMVSVYAQNGRFNDALELCREMEA 214

Query: 199 ---------------------------VRNLFL---------WTALVSGLVQSRNEIDAF 222
                                      V+ +FL         W  +++  V +    +A 
Sbjct: 215 LNLKPNDCTMASLLPAVTNTTSDNVLYVKEMFLKLTKKSVISWNVMIAMYVNNSMPKEAV 274

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
             + +M   GV+  D + + S++ A  + + L LG+++H           L + NA++DM
Sbjct: 275 VLYSQMEANGVE-PDVVSIVSVLPAYGDLSALSLGRRVHKFAERKKLLPNLLLENALIDM 333

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           YAKC  +  A+ +F +M+ +DVVSWTSII    + GQ  + +A++ EM ++G+ P+ + F
Sbjct: 334 YAKCGCLRDARAVFNQMQFRDVVSWTSIISAYGKCGQGRDAVAVFAEMRNSGLNPDSIAF 393

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
           V ++ ACSH GL+  GR  F  M E  GITP L+H+ C++DLL R+G +DEA   I+ MP
Sbjct: 394 VSVLAACSHAGLLDDGRYYFNLMAE-CGITPKLEHFACVVDLLGRAGKIDEAYGFIRQMP 452

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462
            EPDE  W  LLSAC+ + N  +G   A+ LL L PE    Y+LLSN+YA A  W  V+ 
Sbjct: 453 LEPDERVWGPLLSACRVYSNMNIGILAADKLLMLNPEHSGYYVLLSNIYAKAGRWADVAA 512

Query: 463 VRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPD 522
           +R +M    +KK PG S +E   G H F AG+ SHP   +I+E L  L  +MK  GY+P+
Sbjct: 513 IRSIMERKGIKKLPGISNVELNDGVHTFLAGDHSHPQSKKIYEELDVLVGKMKELGYMPE 572

Query: 523 TSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISR 582
           T S LHD+E+++KE  L  HSE+LAVA+ ++ + PGT +RV KNLRVCGDCH+  K+IS+
Sbjct: 573 TDSALHDVEEEDKEYHLAVHSEKLAVAFAIINTKPGTPIRVTKNLRVCGDCHVAAKLISK 632

Query: 583 ITKREIVVRDATRYHHFKDGKCSCNDFW 610
           I +REI++RD  R+HHF++G CSC D+W
Sbjct: 633 IAEREIIIRDTHRFHHFQEGCCSCGDYW 660


>gi|356565095|ref|XP_003550780.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Glycine max]
          Length = 640

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 237/626 (37%), Positives = 345/626 (55%), Gaps = 40/626 (6%)

Query: 22  VKTLHAQIIKLGLHQ----YGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILT 77
            K +HAQI K GLH     +G L   L  A    D + YA  L    P  D     +++ 
Sbjct: 18  TKQIHAQICKTGLHTDPLVFGKL--LLHCAITISDALHYALRLFHHFPNPDTFMHNTLIR 75

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
           + + +  P  ++  F  +     L PD F FA  +KA  +    R G Q+H+      F 
Sbjct: 76  SLSLSQTPLSSLHPFIQLRRQPTLSPDSFTFAFALKAVANSRHLRPGIQLHSQAFRHGFD 135

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
               V ++L+ MYA+CG   +AR VFD +   N V+W A+L+A  R G  + A ++F   
Sbjct: 136 AHIFVGTTLISMYAECGDSGSARRVFDEMSEPNVVTWNAVLTAAFRCGDVEGAQDVFGCM 195

Query: 198 PVRNLFLWTALVSGLVQS---------------RNEI----------------DAFYSFI 226
           PVRNL  W  +++G  ++               R+E+                +AF  F 
Sbjct: 196 PVRNLTSWNGMLAGYAKAGELGLARRVFYEMPLRDEVSWSTMIVGFAHNGCFDEAFGFFR 255

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           E+ RE +   + + L+ ++ ACA     E GK +HG V   G+     ++NA++D Y+KC
Sbjct: 256 ELLREEIR-TNEVSLTGVLSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKC 314

Query: 287 SDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGL 345
            ++  A+ +F  M   + +VSWTSII G A HG  EE + L+ EM  +GV+P+ +TF+ L
Sbjct: 315 GNVAMARLVFQNMPVARSIVSWTSIIAGLAMHGCGEEAIQLFHEMEESGVRPDGITFISL 374

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP 405
           +YACSH GLV +G  LF  M   YGI P+++HY C++DL  R+  L +A   I  MP  P
Sbjct: 375 LYACSHSGLVEEGCGLFSKMKNLYGIEPAIEHYGCMVDLYGRAARLQKAYEFICEMPVSP 434

Query: 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRK 465
           +   W  LL AC  H N EM   V   L  + P++   ++LLSNVYA A  W+ VS +R+
Sbjct: 435 NAIIWRTLLGACSIHGNIEMAELVKARLAEMDPDNSGDHVLLSNVYAVAGKWKDVSSIRR 494

Query: 466 LMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR-GYVPDTS 524
            M+   +KK PG+S IE  K  + F AGE  + + +E  E L E+   ++   GY P   
Sbjct: 495 TMTEHSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHEKLREIMLRLRTEAGYAPQLR 554

Query: 525 SVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRIT 584
           SVLHD+E++EKE  +  HSE+LA A+G+ K   G +LR+VKNLRVCGDCH VMK+IS++ 
Sbjct: 555 SVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRILRIVKNLRVCGDCHTVMKLISKVY 614

Query: 585 KREIVVRDATRYHHFKDGKCSCNDFW 610
           + EI+VRD +R+H FKDG CSC D+W
Sbjct: 615 QVEIIVRDRSRFHSFKDGFCSCRDYW 640



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 79/204 (38%), Gaps = 35/204 (17%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP-QRD 68
           L  CA+       K LH  + K G    G + N LID Y KC  V  A  + + MP  R 
Sbjct: 273 LSACAQAGAFEFGKILHGFVEKAGFLYVGSVNNALIDTYSKCGNVAMARLVFQNMPVARS 332

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW SI+         ++ I +F  M     ++PD   F SL+ AC   G    G    
Sbjct: 333 IVSWTSIIAGLAMHGCGEEAIQLFHEM-EESGVRPDGITFISLLYACSHSGLVEEG---- 387

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGRK 187
                                   CGL +  + ++    ++ ++  +  M+  Y R+ R 
Sbjct: 388 ------------------------CGLFSKMKNLYG---IEPAIEHYGCMVDLYGRAARL 420

Query: 188 KDAMEIFEQAPVR-NLFLWTALVS 210
           + A E   + PV  N  +W  L+ 
Sbjct: 421 QKAYEFICEMPVSPNAIIWRTLLG 444


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/588 (36%), Positives = 330/588 (56%), Gaps = 34/588 (5%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            + LH Q +K    +     NTL+D Y KC  +  A    E+M Q+  VSW S++ AY + 
Sbjct: 674  RALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVRE 733

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             L    I +F  M +   + PD +   S++ AC    +   G+ VH     +       V
Sbjct: 734  GLYDDAIRLFYEMES-KGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPV 792

Query: 143  KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
             ++L+DMYAKC                               G  ++A  +F Q PV+++
Sbjct: 793  SNALMDMYAKC-------------------------------GSMEEAYLVFSQIPVKDI 821

Query: 203  FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
              W  ++ G  ++    +A   F EM++E     D + ++ ++ AC + A LE+G+ IHG
Sbjct: 822  VSWNTMIGGYSKNSLPNEALKLFAEMQKESRP--DGITMACLLPACGSLAALEIGRGIHG 879

Query: 263  LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             ++  GY S L ++NA++DMY KC  ++ A+ +F  +  KD+++WT +I G   HG   E
Sbjct: 880  CILRNGYSSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNE 939

Query: 323  TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
             +A + +M  AG+KP+E+TF  ++YACSH GL+ +G   F SMI +  + P L+HY C++
Sbjct: 940  AIATFQKMRIAGIKPDEITFTSILYACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMV 999

Query: 383  DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
            DLL+R+G+L +A NLI+ MP +PD   W ALL  C+ H + E+  +VA H+  L+P++  
Sbjct: 1000 DLLARTGNLSKAYNLIETMPIKPDATIWGALLCGCRIHHDVELAEKVAEHVFELEPDNAG 1059

Query: 443  SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
             Y+LL+N+YA A  W+ V K+R+ +    +KK PG S+IE       F + +T+HP    
Sbjct: 1060 YYVLLANIYAEAEKWEEVKKLRERIGKRGLKKSPGCSWIEVQGKFTTFVSADTAHPQAKS 1119

Query: 503  IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
            IF LL  L  +MK  G+ P     L +    EKE  L  HSE+LA+A+G+L    G  +R
Sbjct: 1120 IFSLLNNLRIKMKNEGHSPKMRYALINAGDMEKEVALCGHSEKLAMAFGILNLPSGRTIR 1179

Query: 563  VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            V KNLRVC DCH + K +S+ T+REI++RD+ R+HHFKDG CSC DFW
Sbjct: 1180 VAKNLRVCDDCHEMAKFMSKTTRREIILRDSNRFHHFKDGFCSCRDFW 1227



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/419 (23%), Positives = 193/419 (46%), Gaps = 40/419 (9%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           + ++ Y   L++CA H+     K +H+ I   G+   G L   L+  Y  C  ++    +
Sbjct: 449 LDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRI 508

Query: 61  LEEMPQRDHVS-WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
            + +   + V  W  +++ Y +    +++I +F  M  L  +  + + F+ ++K   +LG
Sbjct: 509 FDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLG-ITGNSYTFSCILKCFATLG 567

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
                K++H C     F   + V +SL+                               +
Sbjct: 568 RVGECKRIHGCVYKLGFGSYNTVVNSLI-------------------------------A 596

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM--RREGVDIVD 237
            Y +SG    A ++F++   R++  W +++SG V +     A   F++M   R GVD+  
Sbjct: 597 TYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLA- 655

Query: 238 PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297
              L + V ACAN   L LG+ +HG  +   +   +  +N ++DMY+KC ++  A   F 
Sbjct: 656 --TLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFE 713

Query: 298 RMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357
           +M +K VVSWTS+I    + G  ++ + L+ EM S GV P+  +   +++AC+    + K
Sbjct: 714 KMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDK 773

Query: 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           GR +  + I    +   L     L+D+ ++ G ++EA  +   +P + D  +W  ++  
Sbjct: 774 GRDV-HNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVK-DIVSWNTMIGG 830



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 143/318 (44%), Gaps = 35/318 (11%)

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           K + D   ++S+++ C      + GK VH+    +    + V+ + LV MY  CG     
Sbjct: 446 KSELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREG 505

Query: 160 RAVFDSIKLKNSVS-WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           R +FD I   N V  W  M+S YA+ G  ++++                           
Sbjct: 506 RRIFDHILSDNKVFLWNLMMSEYAKIGDYRESI--------------------------- 538

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
               Y F +M++ G+   +    S I+   A    +   K+IHG V  LG+ S   + N+
Sbjct: 539 ----YLFKKMQKLGI-TGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNS 593

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++  Y K  ++ +A  +F  +  +DVVSW S+I G   +G +   L  + +M+   V  +
Sbjct: 594 LIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVD 653

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
             T V  + AC++VG +  GR L    ++    +  +     LLD+ S+ G+L++A    
Sbjct: 654 LATLVNSVAACANVGSLSLGRALHGQGVKAC-FSREVMFNNTLLDMYSKCGNLNDAIQAF 712

Query: 399 KAMPFEPDEPTWAALLSA 416
           + M  +    +W +L++A
Sbjct: 713 EKMG-QKTVVSWTSLIAA 729



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/245 (22%), Positives = 101/245 (41%), Gaps = 24/245 (9%)

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR-----------REGVDIV----- 236
           IF Q P R  FL + L   + +S   + AF    E             R  V+++     
Sbjct: 389 IFFQQPSRKYFLSSYL--DVPRSSTRVGAFAKLDENTKICKFCEVGDLRNAVELLRMSQK 446

Query: 237 ---DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
              D    SSI+  CA    L+ GK +H ++ + G      +   +V MY  C  +   +
Sbjct: 447 SELDLNAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGR 506

Query: 294 DIFGRMRRKD-VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
            IF  +   + V  W  ++   A+ G   E++ L+ +M   G+  N  TF  ++   + +
Sbjct: 507 RIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATL 566

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           G VG+ +++    +   G          L+    +SG +D A  L   +  + D  +W +
Sbjct: 567 GRVGECKRI-HGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELG-DRDVVSWNS 624

Query: 413 LLSAC 417
           ++S C
Sbjct: 625 MISGC 629


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  429 bits (1103), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/586 (37%), Positives = 338/586 (57%), Gaps = 6/586 (1%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA + + GL  +  L   L  +Y     + Y+  L           W +I+  +    L
Sbjct: 49  IHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGL 108

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            ++ ++ ++ ML    ++P+ F F+S++K C        GK +H+  V   F  D  V++
Sbjct: 109 HEQALNFYAQMLT-QGVEPNAFTFSSILKLC----PIEPGKALHSQAVKLGFDSDLYVRT 163

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
            L+D+YA+ G   +A+ +FD++  K+ VS TAML+ YA+ G    A  +F+    R+   
Sbjct: 164 GLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVC 223

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W  ++ G  Q+    +A   F  M +      +  VLS ++ AC     LE G+ +H  +
Sbjct: 224 WNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLS-VLSACGQLGALESGRWVHSYI 282

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
              G +  + +  A+VDMY+KC  +  A+ +F ++  KDVV+W S+IVG A HG ++E L
Sbjct: 283 ENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEAL 342

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            L+  M   G+ P  +TF+G++ AC H G V +G  +F  M ++YGI P ++HY C+++L
Sbjct: 343 QLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNL 402

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
           L R+GH+++A  L+K M  EPD   W  LL AC+ H    +G ++   L+     +  +Y
Sbjct: 403 LGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTY 462

Query: 445 ILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIF 504
           ILLSN+YA+   W  V+++R +M    VKKEPG S IE     H F AG  +HP + EI+
Sbjct: 463 ILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIY 522

Query: 505 ELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVV 564
            +L E++  +K  GY P T  VLHD+ + EKER L  HSE+LA+A+GL+ + PGT +++V
Sbjct: 523 MMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIV 582

Query: 565 KNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           KNLRVC DCH V K+IS+IT R+IVVRD  R+HHF +G CSC D+W
Sbjct: 583 KNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 628



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/161 (28%), Positives = 73/161 (45%), Gaps = 5/161 (3%)

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           QIH ++   G +    ++  +   YA    +  +  +FGR +   V  WT+II G A  G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
             E+ L  Y +M++ GV+PN  TF  ++  C     +  G+ L    ++  G    L   
Sbjct: 108 LHEQALNFYAQMLTQGVEPNAFTFSSILKLCP----IEPGKALHSQAVK-LGFDSDLYVR 162

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           T LLD+ +R G +  A+ L   MP +      A L    KH
Sbjct: 163 TGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKH 203



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/198 (20%), Positives = 85/198 (42%), Gaps = 9/198 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C +     + + +H+ I   G+     +   L+D Y KC  ++ A  + +++  +D 
Sbjct: 263 LSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDV 322

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
           V+W S++  Y      Q+ + +F +M  +  L P +  F  ++ ACG  G    G     
Sbjct: 323 VAWNSMIVGYAMHGFSQEALQLFKSMCRMG-LHPTNITFIGILSACGHSGWVTEGWDIFN 381

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARS 184
           ++   + + P  +       +V++  + G    A  +  ++ ++ + V W  +L A    
Sbjct: 382 KMKDEYGIEPKIEH---YGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLH 438

Query: 185 GRKKDAMEIFEQAPVRNL 202
           G+     +I E    +NL
Sbjct: 439 GKIALGEKIVELLVDQNL 456


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/602 (36%), Positives = 326/602 (54%), Gaps = 34/602 (5%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L  CA   +    K++H   +K  +         L+  Y KC     A      M  RD 
Sbjct: 437  LPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDI 496

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            V+W S++  Y Q   P   I +F   L L  + PD      +V AC  L     G  +H 
Sbjct: 497  VTWNSLINGYAQIGDPYNAIDMFYK-LRLSAINPDAGTMVGVVPACALLNDLDQGTCIHG 555

Query: 130  CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARSGRKK 188
              V   F  D  VK++L+DMYAKCG   +A  +F+     K+ V+W  +++AY ++G  K
Sbjct: 556  LIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAK 615

Query: 189  DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            +A+                                SF +MR E     + +   S++ A 
Sbjct: 616  EAIS-------------------------------SFHQMRLENFH-PNSVTFVSVLPAA 643

Query: 249  ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
            A  A    G   H  +I +G+ S   + N+++DMYAKC  +  ++ +F  M  KD VSW 
Sbjct: 644  AYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWN 703

Query: 309  SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            +++ G A HG  +  +AL+  M  + V+ + V+FV ++ AC H GLV +GRK+F SM + 
Sbjct: 704  AMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDK 763

Query: 369  YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
            Y I P L+HY C++DLL R+G  DE    IK MP EPD   W ALL +C+ H N ++G  
Sbjct: 764  YHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEV 823

Query: 429  VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
              +HL+ L+P +P+ +++LS++YA +  W    K R  M+ + +KK PG S++E     H
Sbjct: 824  ALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVH 883

Query: 489  IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
             F  G+ SHP  + +  L   L  +M++ GYVPD S VL ++E+++KE  L+ HSERLA+
Sbjct: 884  AFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAI 943

Query: 549  AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
             + LL + PG+ +++VKNLRVC DCH   K IS+IT R I+VRDATR+HHF+DG CSCND
Sbjct: 944  TFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCND 1003

Query: 609  FW 610
            +W
Sbjct: 1004 YW 1005



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 201/444 (45%), Gaps = 40/444 (9%)

Query: 12  VCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVS 71
           +C    I L  +++H  + +        + N LID Y KC  V  A  + ++M  +D VS
Sbjct: 240 ICKLSNIEL-CRSIHGYVFRRDFSS--AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVS 296

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
           W +++  Y       + + +F  M  L  ++ +     S   A         GK++H C 
Sbjct: 297 WGTMMAGYAHNGCFVEVLELFDKM-KLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCA 355

Query: 132 VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
           +      D +V + L+ MYAKC                               G  + A 
Sbjct: 356 LQQRIDSDILVATPLMVMYAKC-------------------------------GETEKAK 384

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
           ++F     R+L  W+A+++ LVQ+    +A   F EM+ + +   + + L SI+ ACA+ 
Sbjct: 385 QLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMK-PNRVTLMSILPACADL 443

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
           ++L+LGK IH   +    +S L    A+V MYAKC    AA   F RM  +D+V+W S+I
Sbjct: 444 SLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLI 503

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G AQ G     + ++ ++  + + P+  T VG++ AC+ +  + +G      +I   G 
Sbjct: 504 NGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGF 562

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
                    L+D+ ++ G L  AE L     F  DE TW  +++A  + +N      +++
Sbjct: 563 ESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA--YMQNGHAKEAISS 620

Query: 432 -HLLSLKPEDPSSYILLSNVYASA 454
            H + L+   P+S   +S + A+A
Sbjct: 621 FHQMRLENFHPNSVTFVSVLPAAA 644



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 188/392 (47%), Gaps = 37/392 (9%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
            H +I + GL +   +   L+D Y K   ++ A  + ++MP+RD V+W +++   +Q+  
Sbjct: 151 FHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSED 210

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P + +  F +M  L  ++P      +L      L    L + +H       F     V +
Sbjct: 211 PCEAVDFFRSM-QLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF--SSAVSN 267

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
            L+D+Y+KCG  + AR VFD +  ++ VSW  M++ YA +G   + +E+F++  + N+ +
Sbjct: 268 GLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRI 327

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                       N++ A  +F+                    A A    LE GK+IHG  
Sbjct: 328 ------------NKVSAVSAFL--------------------AAAETIDLEKGKEIHGCA 355

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           +    +S + ++  ++ MYAKC +   AK +F  ++ +D+V+W++II    Q G  EE L
Sbjct: 356 LQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEAL 415

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
           +L+ EM +  +KPN VT + ++ AC+ + L+  G+ +    ++   +   L   T L+ +
Sbjct: 416 SLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVK-ADMDSDLSTGTALVSM 474

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            ++ G    A      M    D  TW +L++ 
Sbjct: 475 YAKCGFFTAALTTFNRMS-SRDIVTWNSLING 505



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 194/416 (46%), Gaps = 44/416 (10%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYG---KCDLVQYAHHL 60
           ++YLH  R+ +  +    +  +HAQII  G   +  + + LI+ Y    KCDL   A  +
Sbjct: 30  TNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDL---ARSV 85

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
            +  P    + W S++ AY ++    + + ++  M+    L+PD + F  ++KAC     
Sbjct: 86  FDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVE-KGLEPDKYTFTFVLKACTGALN 144

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
            + G   H          D  + + LVDMY+K G    AR VFD +  ++ V+W AM   
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAM--- 201

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
                                       ++GL QS +  +A   F  M+  GV+     +
Sbjct: 202 ----------------------------IAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSL 233

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           L+   G C   + +EL + IHG V    + S   +SN ++D+Y+KC D+  A+ +F +M 
Sbjct: 234 LNLFPGIC-KLSNIELCRSIHGYVFRRDFSSA--VSNGLIDLYSKCGDVDVARRVFDQMV 290

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            +D VSW +++ G A +G   E L L+D+M    V+ N+V+ V    A +    + KG++
Sbjct: 291 DQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKE 350

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +    ++   I   +   T L+ + ++ G  ++A+ L   +    D   W+A+++A
Sbjct: 351 IHGCALQQR-IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGR-DLVAWSAIIAA 404



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 121/254 (47%), Gaps = 7/254 (2%)

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            K+  S T +++ Y+   +   A  +F+  P  +  LW +++    +S+   +A   +  
Sbjct: 60  FKHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYC 119

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M  +G++  D    + ++ AC     L+ G   HG +   G E  +FI   +VDMY+K  
Sbjct: 120 MVEKGLE-PDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMG 178

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
           D+  A+++F +M ++DVV+W ++I G +Q     E +  +  M   GV+P+ V+ + L  
Sbjct: 179 DLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFP 238

Query: 348 ACSHVGLVGKGRKLFKSMI-EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
               +  +   R +   +   D+    S      L+DL S+ G +D A  +   M  + D
Sbjct: 239 GICKLSNIELCRSIHGYVFRRDFSSAVS----NGLIDLYSKCGDVDVARRVFDQM-VDQD 293

Query: 407 EPTWAALLSACKHH 420
           + +W  +++   H+
Sbjct: 294 DVSWGTMMAGYAHN 307


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 232/678 (34%), Positives = 359/678 (52%), Gaps = 73/678 (10%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
           + ++ + L+VC  +      K +H Q+I  G          +++ Y KC LV+ A+ + +
Sbjct: 175 VYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFD 234

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
            MP+RD V W +I++ Y Q    +  + +   M    K +PD     S++ A   +G+ R
Sbjct: 235 RMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGK-RPDSITIVSILPAVADVGSLR 293

Query: 123 LGKQVH------------------------------ACFVLSPFCDDDVVK-SSLVDMYA 151
           +G+ +H                              A  +        VV  +S++D Y 
Sbjct: 294 IGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYV 353

Query: 152 KCGLPNNARAVF--------------------------------------DSIKLKNSVS 173
           + G P  A  +F                                      D ++L + VS
Sbjct: 354 QNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVS 413

Query: 174 -WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
              +++S Y++  R   A EIFE    + L  W A++ G  Q+    +A   F +M+ + 
Sbjct: 414 VMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQN 473

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
           +   D   + S++ A A  +VL   K IHGLVI    +  +F++ A+VDMYAKC  +  A
Sbjct: 474 IK-PDSFTMVSVIPALAELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTA 532

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
           + +F  M  + V +W ++I G   HG  +  L L+++M    +KPNEVTF+ ++ ACSH 
Sbjct: 533 RKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHS 592

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           GLV +G + F SM +DYG+ P++ HY  ++DLL R+  L+EA + I+ MP EP    + A
Sbjct: 593 GLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGA 652

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
           +L AC+ H+N E+G + AN +  L P+D   ++LL+N+YA+A+MW  V++VR  M    +
Sbjct: 653 MLGACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGI 712

Query: 473 KKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQ 532
           +K PG+S +E     H FY+G TSHP   +I+  L  L   +K  GY+PDT+SV HD+E 
Sbjct: 713 QKTPGWSVVELQNEVHTFYSGTTSHPQAKKIYAFLETLGNRIKAAGYMPDTNSV-HDVED 771

Query: 533 KEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRD 592
             KE+ L  HSE+LA+A+ LL + PGT + + KNLRVCGDCH   K IS +TKREI+VRD
Sbjct: 772 VVKEQLLNSHSEKLAIAFSLLNTSPGTTIHLRKNLRVCGDCHNATKYISLVTKREIIVRD 831

Query: 593 ATRYHHFKDGKCSCNDFW 610
             R+HHFKDG CSC D+W
Sbjct: 832 MRRFHHFKDGTCSCGDYW 849



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 210/444 (47%), Gaps = 41/444 (9%)

Query: 17  QIALTVKTLH---AQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWA 73
           ++  ++K LH     IIK GL+        L+  + K   +  A  + + +  +    + 
Sbjct: 85  ELCTSMKELHQFIPLIIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYH 144

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           ++L  Y + +     +S F  M   D ++P  + F  L+K CG     R GK++H   ++
Sbjct: 145 TMLKGYARNSSLDDAVSFFCRM-RYDGVRPVVYNFTYLLKVCGDNADLRKGKEIHCQLIV 203

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
           + F  +    + +V+MYAKC L   A  +FD +  ++ V W  ++S YA++G  K A+E+
Sbjct: 204 NGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALEL 263

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
                                           + M+ EG    D + + SI+ A A+   
Sbjct: 264 -------------------------------VLRMQEEG-KRPDSITIVSILPAVADVGS 291

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L +G+ IHG  +  G+ES + +S A+VDMY+KC  +  A+ IF RM  K VVSW S+I G
Sbjct: 292 LRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDG 351

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
             Q+G     + ++ +M+   V+   VT +G ++AC+ +G V +GR + K +++   +  
Sbjct: 352 YVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHK-LLDQLELGS 410

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR-NTEMGTRVANH 432
            +     L+ + S+   +D A  + + +  +      A +L   ++ R N  +       
Sbjct: 411 DVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQ 470

Query: 433 LLSLKPEDPSSYILLSNVYASAAM 456
           L ++KP+   S+ ++S + A A +
Sbjct: 471 LQNIKPD---SFTMVSVIPALAEL 491


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 208/589 (35%), Positives = 344/589 (58%), Gaps = 34/589 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HA  I+        L   L+D Y KC L+ YA  +   + +++ V W++++  Y   
Sbjct: 230 KAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLH 289

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           +     ++++  ML +  L P     A++++AC  L   + GK++H   + S    D  V
Sbjct: 290 DSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTV 349

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SL+ MYAKCG+ +                               +A+   ++   ++ 
Sbjct: 350 GNSLISMYAKCGIMD-------------------------------NAVGFLDEMIAKDT 378

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGV-DIVDPLVLSSIVGACANFAVLELGKQIH 261
             ++A++SG VQ+     A   F +M+  G+   ++ ++  +++ AC++ A L+ G   H
Sbjct: 379 VSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMI--ALLPACSHLAALQHGTCCH 436

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           G  +  G+ +   I NAI+DMY+KC  I  +++IF RM+ +D++SW ++I+G   HG   
Sbjct: 437 GYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCV 496

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L+L+ E+ + G+KP++VT + ++ ACSH GLV +G+  F SM +++ I P + HY C+
Sbjct: 497 EALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICM 556

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL+R+G+LDEA   I+ MPF P+   W ALL+AC+ H+N EMG +V+  +  L PE  
Sbjct: 557 VDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAACRTHKNIEMGEQVSKKIQLLGPEGT 616

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            +++L+SN+Y+S   W   + +R +      KK PG S++E     H+F  G  SHP   
Sbjct: 617 GNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSPGCSWVEISGVIHVFIGGHQSHPQSA 676

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            I + L EL  +MK+ GY  D+S VLHD+E++EKE+ L +HSE++A+A+G+L + P + +
Sbjct: 677 SINKKLQELLVQMKKLGYRADSSFVLHDVEEEEKEQILLYHSEKVAIAFGILNTSPSSRI 736

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            V KNLR+C DCH  +K I+ +T+REI VRDA+R+HHFKDG C+C DFW
Sbjct: 737 LVTKNLRICVDCHSAIKFITLLTEREITVRDASRFHHFKDGICNCQDFW 785



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 178/367 (48%), Gaps = 38/367 (10%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           +Q A H+ +++P+   V W  ++  Y  +   Q++I ++  ML L  + P +F F  L+K
Sbjct: 57  IQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLG-VTPTNFTFPFLLK 115

Query: 114 ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI--KLKNS 171
           AC SL A +LG+ +H    +     D  V ++L+ MYAKCG    A+ +F+SI  + ++ 
Sbjct: 116 ACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDI 175

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           V+W AM++A++                      + AL              +S  +M++ 
Sbjct: 176 VAWNAMIAAFS----------------------FHAL---------HAQTIHSVAQMQQA 204

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
           GV   +   L SI+        L  GK IH   I   +   + +  A++DMYAKC  +  
Sbjct: 205 GVT-PNSSTLVSILPTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFY 263

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA-GVKPNEVTFVGLIYACS 350
           A+ IF  + +K+ V W+++I G   H    + LALYD+M+   G+ P   T   ++ AC+
Sbjct: 264 ARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACA 323

Query: 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTW 410
            +  + +G+KL   MI+  G+         L+ + ++ G +D A   +  M    D  ++
Sbjct: 324 QLTDLKRGKKLHCHMIKS-GMDLDTTVGNSLISMYAKCGIMDNAVGFLDEM-IAKDTVSY 381

Query: 411 AALLSAC 417
           +A++S C
Sbjct: 382 SAIISGC 388



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 98/187 (52%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR CA+       K LH  +IK G+     + N+LI  Y KC ++  A   L+EM  +D 
Sbjct: 319 LRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDT 378

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS+++I++   Q    +K + IF  M +   + P      +L+ AC  L A + G   H 
Sbjct: 379 VSYSAIISGCVQNGYAEKALLIFRQMQS-SGIAPYLETMIALLPACSHLAALQHGTCCHG 437

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V+  F +D  + ++++DMY+KCG    +R +FD ++ ++ +SW  M+  Y   G   +
Sbjct: 438 YTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVE 497

Query: 190 AMEIFEQ 196
           A+ +F++
Sbjct: 498 ALSLFQE 504



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 125/269 (46%), Gaps = 5/269 (1%)

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F+Q P  ++ LW  ++     S     + Y ++ M + GV   +      ++ AC+
Sbjct: 60  ARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTN-FTFPFLLKACS 118

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM--RRKDVVSW 307
           +   L+LG+ IH     LG    L++S A++ MYAKC  +  A+ +F  +  + +D+V+W
Sbjct: 119 SLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAW 178

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            ++I   + H    +T+    +M  AGV PN  T V ++        + +G+ +    I 
Sbjct: 179 NAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYYIR 238

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
           ++     +   T LLD+ ++   L  A  +   +  + ++  W+A++     H +     
Sbjct: 239 NFFFDNVVLQ-TALLDMYAKCHLLFYARKIFNTVN-KKNDVCWSAMIGGYVLHDSISDAL 296

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAM 456
            + + +L +   +P+   L + + A A +
Sbjct: 297 ALYDDMLCIYGLNPTPATLATMLRACAQL 325


>gi|356528130|ref|XP_003532658.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Glycine max]
          Length = 674

 Score =  429 bits (1102), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 228/569 (40%), Positives = 335/569 (58%), Gaps = 33/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +I AY     ++ A +L +EMP R+  +W +++T   +  + ++ + +FS M  L   
Sbjct: 139 NIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEMNEEALLLFSRMNELS-F 197

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            PD +   S+++ C  LGA   G+QVHA  +   F  + VV  SL  MY K G  ++   
Sbjct: 198 MPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGCSLAHMYMKAGSMHDGER 257

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           V         ++W                       P  +L  W  L+SG  Q       
Sbjct: 258 V---------INWM----------------------PDCSLVAWNTLMSGKAQKGYFEGV 286

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              +  M+  G    D +   S++ +C+  A+L  GKQIH   +  G  S + + +++V 
Sbjct: 287 LDQYCMMKMAGFR-PDKITFVSVISSCSELAILCQGKQIHAEAVKAGASSEVSVVSSLVS 345

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY++C  +  +   F   + +DVV W+S+I     HGQ EE + L++EM    +  NE+T
Sbjct: 346 MYSRCGCLQDSIKTFLECKERDVVLWSSMIAAYGFHGQGEEAIKLFNEMEQENLPGNEIT 405

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+ L+YACSH GL  KG  LF  M++ YG+   LQHYTCL+DLL RSG L+EAE +I++M
Sbjct: 406 FLSLLYACSHCGLKDKGLGLFDMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSM 465

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P + D   W  LLSACK H+N E+  RVA+ +L + P+D +SY+LL+N+Y+SA  WQ+VS
Sbjct: 466 PVKADAIIWKTLLSACKIHKNAEIARRVADEVLRIDPQDSASYVLLANIYSSANRWQNVS 525

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           +VR+ M    VKKEPG S++E     H F+ G+  HP   EI + L EL +E+KR+GYVP
Sbjct: 526 EVRRAMKDKMVKKEPGISWVEVKNQVHQFHMGDECHPKHVEINQYLEELTSEIKRQGYVP 585

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           DTSSVLHDM+ +EKE+ L  HSE+LA+A+ L+ +  G  +RV+KNLRVC DCH+ +K IS
Sbjct: 586 DTSSVLHDMDNEEKEQILRHHSEKLAIAFALMNTPEGVPIRVMKNLRVCSDCHVAIKYIS 645

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
            I K EI+VRD++R+HHFK+G CSC D+W
Sbjct: 646 EIKKLEIIVRDSSRFHHFKNGTCSCGDYW 674



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 173/337 (51%), Gaps = 5/337 (1%)

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
           L ++  +  +F++L++AC  L +  LGKQ+H+    S    D  + + L+++Y+K G   
Sbjct: 62  LSEIWAEPRLFSNLLQACIPLKSVSLGKQLHSLIFTSGCSSDKFISNHLLNLYSKFGELQ 121

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
            A A+FD +  +N +S   M+ AY   G  + A  +F++ P RN+  W A+V+GL +   
Sbjct: 122 AAVALFDRMPRRNIMSCNIMIKAYLGMGNLESAKNLFDEMPDRNVATWNAMVTGLTKFEM 181

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             +A   F  M  E   + D   L S++  CA+   L  G+Q+H  V+  G+E  L +  
Sbjct: 182 NEEALLLFSRM-NELSFMPDEYSLGSVLRGCAHLGALLAGQQVHAYVMKCGFECNLVVGC 240

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           ++  MY K   +   + +   M    +V+W +++ G AQ G  E  L  Y  M  AG +P
Sbjct: 241 SLAHMYMKAGSMHDGERVINWMPDCSLVAWNTLMSGKAQKGYFEGVLDQYCMMKMAGFRP 300

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL-DEAEN 396
           +++TFV +I +CS + ++ +G+++    ++  G +  +   + L+ + SR G L D  + 
Sbjct: 301 DKITFVSVISSCSELAILCQGKQIHAEAVKA-GASSEVSVVSSLVSMYSRCGCLQDSIKT 359

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
            ++    E D   W+++++A   H   E   ++ N +
Sbjct: 360 FLECK--ERDVVLWSSMIAAYGFHGQGEEAIKLFNEM 394



 Score = 48.1 bits (113), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 23/180 (12%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           C+   I    K +HA+ +K G      + ++L+  Y +C  +Q +     E  +RD V W
Sbjct: 312 CSELAILCQGKQIHAEAVKAGASSEVSVVSSLVSMYSRCGCLQDSIKTFLECKERDVVLW 371

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
           +S++ AY      ++ I +F+ M   + L  +   F SL+ AC   G    G        
Sbjct: 372 SSMIAAYGFHGQGEEAIKLFNEM-EQENLPGNEITFLSLLYACSHCGLKDKG-------- 422

Query: 133 LSPFCDDDVVK-----------SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
           L  F  D +VK           + LVD+  + G    A A+  S+ +K +++ W  +LSA
Sbjct: 423 LGLF--DMMVKKYGLKARLQHYTCLVDLLGRSGCLEEAEAMIRSMPVKADAIIWKTLLSA 480


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 227/603 (37%), Positives = 329/603 (54%), Gaps = 36/603 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+VCA    A+  + +H Q+++ G      +   L+D Y KC  +  AH + + M  RD 
Sbjct: 139 LKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDV 198

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V W +++T Y QA  P K + +F  M   +    D     S+  A G LG  R+   VH 
Sbjct: 199 VCWTAMITLYEQAERPLKALMLFRKMQE-EGFLGDEITAISVASAVGQLGDGRMAISVHG 257

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             VL+ F  D  V +S+V MYAKCG    AR V                           
Sbjct: 258 YAVLNGFIGDVSVGNSIVGMYAKCGNVERARLV--------------------------- 290

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
               F++   RN   W +++SG  Q+    DA   F +M+    D  +P+    +V AC+
Sbjct: 291 ----FDRMEERNGISWNSMLSGYTQNGRPTDALSLFNQMQASECD-PNPVTALIMVSACS 345

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR--MRRKDVVSW 307
                 LG+++H  VI+   +    + NAI+DMY KC D+  A ++F    +  +DV SW
Sbjct: 346 YLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSW 405

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
             +I G   HG  +E L L+  M   GV+PN++TF  ++ ACSH GL+ +GRK F  M +
Sbjct: 406 NVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTK 465

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
              + P ++HY C++D+L R+G L+EA  LIK +P  P +  W ALL AC+ H NTE+G 
Sbjct: 466 -LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGE 524

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
             AN+L  L+PE    Y+L+SN+YA++  W+ V  VR+ M    +KK   +S IEFG   
Sbjct: 525 IAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEV 584

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
           H F+  + S P   E++  +  L  EMK  GYVPD S VLHD+E ++KE  L +HSE+LA
Sbjct: 585 HGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLA 644

Query: 548 VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
           VA+G++K   G  ++V KNLRVC DCH   K IS I  R+I+VRD  R+HHF+ G+CSC 
Sbjct: 645 VAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCG 704

Query: 608 DFW 610
           D+W
Sbjct: 705 DYW 707



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 170/345 (49%), Gaps = 37/345 (10%)

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           ++L AY  A    + I ++  M  +  +  ++F +  ++K C S      G+ VH   V 
Sbjct: 102 TMLRAYANAGRSYEAIDLYIYMQRMG-VGVNNFTYPFVLKVCASELGAVFGEVVHGQVVR 160

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
           + F  D  V+++LVDMYAKCG   +A  VFD + +++ V WTAM++ Y ++ R       
Sbjct: 161 TGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAER------- 213

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
               P++ L L                    F +M+ EG  + D +   S+  A      
Sbjct: 214 ----PLKALML--------------------FRKMQEEGF-LGDEITAISVASAVGQLGD 248

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
             +   +HG  +  G+   + + N+IV MYAKC ++  A+ +F RM  ++ +SW S++ G
Sbjct: 249 GRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSG 308

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED-YGIT 372
             Q+G+  + L+L+++M ++   PN VT + ++ ACS++G    GRKL   +I     I 
Sbjct: 309 YTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDID 368

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPF-EPDEPTWAALLSA 416
            +L++   ++D+  + G LD A  +       E D  +W  L+S 
Sbjct: 369 TTLRN--AIMDMYMKCGDLDTAVEMFNNCELGERDVSSWNVLISG 411



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 165/390 (42%), Gaps = 90/390 (23%)

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC-DDDVVKSSLVDMYAKC 153
           +LAL  L   H  +  L++ C SL   +L   +H+      F        + L+ +Y+K 
Sbjct: 18  VLALPSL---HHFYDHLLQCCTSLTTLKL---IHSSLSTRGFLLHTPHFLARLIILYSKL 71

Query: 154 GLPNNARAVFDS--------IKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLW 205
           G  ++AR +FD          +  NS     ML AYA +GR  +A++++           
Sbjct: 72  GDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLY----------- 120

Query: 206 TALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265
                               I M+R GV  V+      ++  CA+      G+ +HG V+
Sbjct: 121 --------------------IYMQRMGVG-VNNFTYPFVLKVCASELGAVFGEVVHGQVV 159

Query: 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA 325
             G+ S LF+  A+VDMYAKC +I  A ++F RM  +DVV WT++I    Q  +  + L 
Sbjct: 160 RTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALM 219

Query: 326 LYDEMVSAGVKPNEVTFVGLIYACSHVG--------------------------LVG--- 356
           L+ +M   G   +E+T + +  A   +G                          +VG   
Sbjct: 220 LFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYA 279

Query: 357 ------KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDE 407
                 + R +F  M E  GI+     +  +L   +++G   +A +L   M     +P+ 
Sbjct: 280 KCGNVERARLVFDRMEERNGIS-----WNSMLSGYTQNGRPTDALSLFNQMQASECDPNP 334

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLK 437
            T   ++SAC +  +  +G ++ N ++S K
Sbjct: 335 VTALIMVSACSYLGSKHLGRKLHNFVISSK 364


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/609 (36%), Positives = 348/609 (57%), Gaps = 41/609 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C++ ++    K +H  + KLG      + N++ID Y KC +V  A  +   +P R+ 
Sbjct: 11  LNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVRNV 70

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW +++  Y      ++ +++F  M    ++ PD + ++S +KAC    A   G Q+HA
Sbjct: 71  ISWNAMIAGYTNERNGEEALNLFREMREKGEV-PDGYTYSSSLKACSCADAAGEGMQIHA 129

Query: 130 CFVLS--PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
             +    P+     V  +LVD+Y KC     AR VFD I+ K+ +SW+ ++  YA+    
Sbjct: 130 ALIRHGFPYLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNL 189

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
           K+AM++F +               L +SR+ +D F                 VLSSI+G 
Sbjct: 190 KEAMDLFRE---------------LRESRHRMDGF-----------------VLSSIIGV 217

Query: 248 CANFAVLELGKQIHGLVIALGYESC-LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
            A+FA+LE GKQ+H   I + Y    + ++N+++DMY KC   + A  +F  M  ++VVS
Sbjct: 218 FADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMKCGLTVEADALFREMLERNVVS 277

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           WT +I G  +HG   + + L++EM   G++P+ VT++ ++ ACSH GL+ +G+K F  + 
Sbjct: 278 WTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAVLSACSHSGLIKEGKKYFSILC 337

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
            +  I P ++HY C++DLL R G L EA+NLI+ MP +P+   W  LLS C+ H + EMG
Sbjct: 338 SNQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKPNVGIWQTLLSVCRMHGDVEMG 397

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
            +V   LL  +  +P++Y+++SN+YA A  W+   K+R+ +    +KKE G S++E  K 
Sbjct: 398 KQVGEILLRREGNNPANYVMVSNMYAHAGYWKESEKIRETLKRKGLKKEAGRSWVEMDKE 457

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRR-GYVPDTSSVLHDMEQKEKERQLFWHSER 545
            HIFY G+  HPL +EI E+L E++  +K   GYV   +  LHD+E++ K   L  HSE+
Sbjct: 458 IHIFYNGDGMHPLIEEIHEVLKEMEKRVKEEMGYVHSINFSLHDVEEESKMESLRVHSEK 517

Query: 546 LAVAYGL----LKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           LA+   L    LK     V+R+ KNLRVCGDCH  +K +S++ K   VVRDA R+H F++
Sbjct: 518 LAIGLVLVRRGLKLKGERVIRIFKNLRVCGDCHAFIKGLSKVLKIAFVVRDANRFHRFEN 577

Query: 602 GKCSCNDFW 610
           G CSC D+W
Sbjct: 578 GLCSCGDYW 586



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 92/178 (51%), Gaps = 6/178 (3%)

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
           +L+ I+  C+   +L+ GKQ+HG+V  LG++    + N+++DMY+KC  +  A  +F  +
Sbjct: 6   LLNKILNKCSKRRLLDQGKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTL 65

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
             ++V+SW ++I G       EE L L+ EM   G  P+  T+   + ACS     G+G 
Sbjct: 66  PVRNVISWNAMIAGYTNERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGEGM 125

Query: 360 KLFKSMIEDYGITPSLQHYT---CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           ++  ++I  +G  P L        L+DL  +   + EA  +   +  E    +W+ L+
Sbjct: 126 QIHAALIR-HGF-PYLAQSAVAGALVDLYVKCRRMAEARKVFDRIE-EKSVMSWSTLI 180


>gi|302763761|ref|XP_002965302.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
 gi|300167535|gb|EFJ34140.1| hypothetical protein SELMODRAFT_83034 [Selaginella moellendorffii]
          Length = 600

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 229/611 (37%), Positives = 338/611 (55%), Gaps = 35/611 (5%)

Query: 2   QISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
           +IS Y+  L+ CA  +  L  K +H+ ++K G      + N LI+ YGKC  +  A  + 
Sbjct: 23  EISTYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIAEARSVF 82

Query: 62  EEMPQR--DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
           +++ ++  D +SW  I+ AY Q  L ++ + +F TM  L+ +  +     + + AC SL 
Sbjct: 83  DQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKTM-DLEGVIANQVTLINAIDACASLP 141

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
           +   G+ VHA  V      D +V +SLV+M+ KC   + ARAVFDS+             
Sbjct: 142 SEEEGRIVHAIAVDKRLESDTMVGTSLVNMFGKCKNVDAARAVFDSL------------- 188

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
                             P +NL  W  +V+   Q+     A   F  M  EGV   D +
Sbjct: 189 ------------------PRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGVQ-PDAV 229

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
              +I+ ACA  A    G+ +H  + A G    + +  A++  Y KC  +  A+ IF  +
Sbjct: 230 TFLTIIDACAALAAHTEGRMVHDDITASGIPMDVALGTAVMHFYGKCGRLDNARAIFDSL 289

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
            +K+ V+W++I+   AQ+G   E + LY EMV  G++ N +TF+GL++ACSH G    G 
Sbjct: 290 GKKNTVTWSAILAAYAQNGYETEAIELYHEMVQGGLEVNGITFLGLLFACSHAGRSMDGV 349

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
             F SMI D+G+ P  +HY  L+DLL RSG L  +E+LI +MP+EPD   W ALL AC+ 
Sbjct: 350 DYFVSMIRDFGVVPVFEHYLNLIDLLGRSGQLQLSEDLINSMPYEPDSSAWLALLGACRM 409

Query: 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
           H + + G R+A  +  L PED   YILLSN+Y+S        + RK M +  + K+PG S
Sbjct: 410 HGDVDRGARIAELIYELDPEDSGPYILLSNLYSSTGRMDEARRTRKAMRLRGITKQPGLS 469

Query: 480 YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL 539
            IE     H F A +  HP    I   +  L A +K  GYV D  +VL D+E++EKE+ L
Sbjct: 470 SIEVKDRVHEFMAAQKLHPQLGRIHAEIERLKARVKEAGYVADVRAVLRDVEEEEKEQLL 529

Query: 540 FWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
           ++HSERLA+A+GL+ + PGT L +VKNLRVC DCH  +K IS++  R+IVVRDA R+HHF
Sbjct: 530 WYHSERLAIAFGLISTPPGTALHIVKNLRVCFDCHAAVKAISKVVGRKIVVRDAIRFHHF 589

Query: 600 KDGKCSCNDFW 610
           ++G CSC D+W
Sbjct: 590 ENGACSCGDYW 600



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 164/321 (51%), Gaps = 36/321 (11%)

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
           +D+ + +   +  L+K C    A   GK+VH+C V   +  D ++ + L++MY KCG   
Sbjct: 17  VDERREEISTYVLLLKKCADSKALLEGKRVHSCLVKDGYASDRLIANLLIEMYGKCGGIA 76

Query: 158 NARAVFDSIKLKNS--VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
            AR+VFD I+ KN+  +SW  ++ AY ++G  K+A+ +F+                    
Sbjct: 77  EARSVFDQIQEKNADVISWNGIIGAYTQNGLGKEALHLFKT------------------- 117

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI 275
                       M  EGV I + + L + + ACA+    E G+ +H + +    ES   +
Sbjct: 118 ------------MDLEGV-IANQVTLINAIDACASLPSEEEGRIVHAIAVDKRLESDTMV 164

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
             ++V+M+ KC ++ AA+ +F  + RK++V+W +++   +Q+ Q ++ + ++  M   GV
Sbjct: 165 GTSLVNMFGKCKNVDAARAVFDSLPRKNLVTWNNMVAVYSQNWQCKKAIQVFRFMDLEGV 224

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
           +P+ VTF+ +I AC+ +    +GR +    I   GI   +   T ++    + G LD A 
Sbjct: 225 QPDAVTFLTIIDACAALAAHTEGRMVHDD-ITASGIPMDVALGTAVMHFYGKCGRLDNAR 283

Query: 396 NLIKAMPFEPDEPTWAALLSA 416
            +  ++  + +  TW+A+L+A
Sbjct: 284 AIFDSLG-KKNTVTWSAILAA 303


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/632 (35%), Positives = 354/632 (56%), Gaps = 64/632 (10%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           + LID   +   +  A  + + + ++  V W  +++ Y Q    ++ + IF   L  D  
Sbjct: 192 SALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLE-DGF 250

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP---NN 158
           +PD +  +S++ AC  LG+ RLG Q+H+  +   F  D  V   LVDMYAK  +    + 
Sbjct: 251 EPDRYTMSSMISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDY 310

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM-----EIFEQAPVRNLFLWT------- 206
           A  VF+ ++  + +SWTA++S Y +SG +++ +     E+  ++   N   ++       
Sbjct: 311 ANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACA 370

Query: 207 ----------------------------ALVSGLVQS------RNEIDAFY--SFIEMRR 230
                                       ALVS   +S      R   +  Y  S I    
Sbjct: 371 NISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERSMISCIT 430

Query: 231 EGVDI------------VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
           EG D             +     +S++ A A+  +L  G+Q+H + +  G+ S  F+SN+
Sbjct: 431 EGRDAPLDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVSNS 490

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           +V MY++C  +  A   F  ++ ++V+SWTS+I G A+HG AE  L+L+ +M+  GVKPN
Sbjct: 491 LVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPN 550

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           +VT++ ++ ACSHVGLV +G++ F+SM  D+G+ P ++HY C++DLL+RSG + EA   I
Sbjct: 551 DVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFI 610

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
             MP + D   W  LL AC+ H N E+G   A +++ L+P DP+ Y+LLSN+YA A +W 
Sbjct: 611 NEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGLWD 670

Query: 459 HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
            V+++R  M    + KE G S++E    +H F AG+TSHP   +I+  L  L  E+K  G
Sbjct: 671 EVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVGEIKGMG 730

Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
           YVPDTS VLHDM  + KE+ L  HSE++AVA+GL+ +     +R+ KNLRVC DCH  +K
Sbjct: 731 YVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIK 790

Query: 579 MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +S+ T+REI++RD+ R+H  KDG+CSC ++W
Sbjct: 791 YMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 129/526 (24%), Positives = 242/526 (46%), Gaps = 69/526 (13%)

Query: 23  KTLHAQIIKLGL-HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ-RDHVSWASILTAYN 80
           + LH ++++  L  +   + N+L+  Y +C  V  A ++ + M   RD VSW ++ +   
Sbjct: 68  RALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLA 127

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC--GSLGATRLGKQVHACFVLSPFCD 138
           +    ++++ +   ML    L P+ +   ++  AC    L     G  +     +  +  
Sbjct: 128 RNGAERESLLLIGEMLE-SGLLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGT 186

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  V S+L+DM A+ G   +AR VFD +  K  V WT ++S Y +    ++A+EI     
Sbjct: 187 DIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEI----- 241

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
                                  F  F+E   +G +  D   +SS++ AC     + LG 
Sbjct: 242 -----------------------FLDFLE---DGFE-PDRYTMSSMISACTELGSVRLGL 274

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD----IFGRMRRKDVVSWTSIIVGT 314
           Q+H L + +G+ S   +S  +VDMYAK S+I  A D    +F RMR+ DV+SWT++I G 
Sbjct: 275 QLHSLALRMGFASDACVSCGLVDMYAK-SNIEQAMDYANKVFERMRKNDVISWTALISGY 333

Query: 315 AQHG-QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
            Q G Q  + + L+ EM++  +KPN +T+  ++ AC+++     GR++   +I+      
Sbjct: 334 VQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHVIKS---NQ 390

Query: 374 SLQHY--TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
           +  H     L+ + + SG ++EA  +   + +E       +++S     R+  +  R+  
Sbjct: 391 AAAHTVGNALVSMYAESGCMEEARRVFNQL-YE------RSMISCITEGRDAPLDHRIGR 443

Query: 432 HLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI-------EFG 484
             + +     S++  L +  AS  M   ++K ++L + M +K   G            + 
Sbjct: 444 MDMGIS---SSTFASLISAAASVGM---LTKGQQLHA-MTLKAGFGSDRFVSNSLVSMYS 496

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDM 530
           +  ++  A  + + LKD      T + + + + GY     S+ HDM
Sbjct: 497 RCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDM 542



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 73/320 (22%), Positives = 134/320 (41%), Gaps = 57/320 (17%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA      + + +HA +IK        + N L+  Y +   ++ A  +  ++ +R  
Sbjct: 366 LKACANISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYER-- 423

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            S  S +T    A L  +        +    +      FASL+ A  S+G    G+Q+HA
Sbjct: 424 -SMISCITEGRDAPLDHR--------IGRMDMGISSSTFASLISAAASVGMLTKGQQLHA 474

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + + F  D  V +SLV MY++CG   +A   F+ +K +N +SWT+M+S  A+ G  + 
Sbjct: 475 MTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAER 534

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +F                                +M   GV   D   + +++ AC+
Sbjct: 535 ALSLFH-------------------------------DMILTGVKPNDVTYI-AVLSACS 562

Query: 250 NFAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           +  ++  GK+        HGL+  + + +C+      VD+ A+   +  A +    M  K
Sbjct: 563 HVGLVREGKEYFRSMQRDHGLIPRMEHYACM------VDLLARSGLVKEALEFINEMPLK 616

Query: 303 -DVVSWTSIIVGTAQHGQAE 321
            D + W +++     H   E
Sbjct: 617 ADALVWKTLLGACRSHDNIE 636



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 137/307 (44%), Gaps = 45/307 (14%)

Query: 119 GATRLGKQVHACFVLSPFCDDD-VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAM 177
           G  RLG+ +H   +     D D VV +SL+ +Y++CG   +AR VF              
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVF-------------- 107

Query: 178 LSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD 237
                      D M       +R++  WTA+ S L ++  E ++     EM   G+ + +
Sbjct: 108 -----------DGMR-----GLRDIVSWTAMASCLARNGAERESLLLIGEMLESGL-LPN 150

Query: 238 PLVLSSIVGACANFAV-----LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
              L ++  AC    +       +   +H + +   + + + + +A++DM A+  D+ +A
Sbjct: 151 AYTLCAVAHACFPHELYCLVGGVVLGLVHKMGL---WGTDIAVGSALIDMLARNGDLASA 207

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
           + +F  +  K VV WT +I    Q   AEE + ++ + +  G +P+  T   +I AC+ +
Sbjct: 208 RKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTEL 267

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG---HLDEAENLIKAMPFEPDEPT 409
           G V  G +L  S+    G          L+D+ ++S     +D A  + + M  + D  +
Sbjct: 268 GSVRLGLQL-HSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMR-KNDVIS 325

Query: 410 WAALLSA 416
           W AL+S 
Sbjct: 326 WTALISG 332



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 88/181 (48%), Gaps = 15/181 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHA  +K G      + N+L+  Y +C  ++ A     E+  R+ +SW S+++   + 
Sbjct: 470 QQLHAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKH 529

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ +S+F  M+ L  ++P+   + +++ AC  +G  R GK+    +  S   D  ++
Sbjct: 530 GYAERALSLFHDMI-LTGVKPNDVTYIAVLSACSHVGLVREGKE----YFRSMQRDHGLI 584

Query: 143 K-----SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKKDAMEIFEQ 196
                 + +VD+ A+ GL   A    + + LK +++ W  +L A     R  D +E+ E 
Sbjct: 585 PRMEHYACMVDLLARSGLVKEALEFINEMPLKADALVWKTLLGAC----RSHDNIEVGEI 640

Query: 197 A 197
           A
Sbjct: 641 A 641


>gi|449496903|ref|XP_004160258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 583

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/556 (38%), Positives = 325/556 (58%), Gaps = 36/556 (6%)

Query: 55  QYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA 114
            YA  + + +   +   W + L ++ + + P   IS+F  +   D + PDH+  + ++KA
Sbjct: 64  SYAKLIFQLLDASEVTHWNTCLRSFAEGDSPADAISLFYRLREFD-ISPDHYTCSFVLKA 122

Query: 115 CGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSW 174
           C  L   R GK VH          +  +++ +V +YA CG    AR VFD +  ++ ++W
Sbjct: 123 CSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITW 182

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
             M++   + G  + A ++F + P RN+  WT+++ G  Q     +A   F+EM   G+ 
Sbjct: 183 NIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGL- 241

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
           + + + + +++ ACA+   L LG++IH      GYE  + + N ++DMY KC  +  A  
Sbjct: 242 LPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACR 301

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL 354
           IF  M  + VVSW+++I G A HG+AE+ LAL+++M++ GVKPN VTF+G+++ACSH+G+
Sbjct: 302 IFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGM 361

Query: 355 VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           V KGRK F SM  DYGI P ++HY C++DL SR+G L EA   I  MP  P+   W ALL
Sbjct: 362 VEKGRKYFASMTRDYGIVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALL 421

Query: 415 SACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKK 474
             CK H+N ++      HL  L P +   Y++LSN+YA A  W+ V++VRKLM       
Sbjct: 422 GGCKVHKNVKLAEEATRHLSKLDPLNDGYYVVLSNIYAEAGRWEDVARVRKLMR------ 475

Query: 475 EPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE 534
                     +G+                     +L   MK +GYVP+TS VL DME+ +
Sbjct: 476 ---------DRGT-------------------WEKLLQRMKLKGYVPNTSVVLLDMEEDQ 507

Query: 535 KERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDAT 594
           KE+ L+ HSE+LAV +GL+K+ PGTV+R++KNLRVC DCH  +K+IS ++ REIVVRD  
Sbjct: 508 KEKFLYRHSEKLAVVFGLIKTTPGTVIRIMKNLRVCEDCHAALKIISVVSTREIVVRDRN 567

Query: 595 RYHHFKDGKCSCNDFW 610
           R+H FK+G CSC D+W
Sbjct: 568 RFHCFKNGSCSCGDYW 583



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 107/217 (49%), Gaps = 30/217 (13%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+R       K +H  + KLGL     L N ++  Y  C  +  A  + ++MPQRD 
Sbjct: 120 LKACSRLLDVRNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDV 179

Query: 70  VSWASILT----------AYNQ-ANLPQKTISIFSTML-----------ALD-------- 99
           ++W  ++           AY   A +P++ +  +++M+           A+D        
Sbjct: 180 ITWNIMIARLVKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDA 239

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            L P+     +++ AC  +G   LG+++H     S +  +  V ++L+DMY KCG   +A
Sbjct: 240 GLLPNEVTVVAVLVACADMGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDA 299

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             +FD+++ +  VSW+AM++  A  GR +DA+ +F +
Sbjct: 300 CRIFDNMEERTVVSWSAMIAGLAAHGRAEDALALFNK 336


>gi|224124638|ref|XP_002330073.1| predicted protein [Populus trichocarpa]
 gi|222871498|gb|EEF08629.1| predicted protein [Populus trichocarpa]
          Length = 793

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/569 (38%), Positives = 332/569 (58%), Gaps = 2/569 (0%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N++I  +GK   V+ A  L  EM Q+D VSW+++++ Y Q  + ++ + +F  M A + +
Sbjct: 227 NSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEALILFKEMNA-NGI 285

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             D  V  S++ AC  L     GK VH   V         ++++L+ MY+ C     A+ 
Sbjct: 286 MVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQK 345

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F      + +SW +M+S Y + G  + A  +F+  P ++   W+A++SG  Q     + 
Sbjct: 346 LFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTET 405

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F EM+ EG    D  +L S++ AC + A L+ GK IH  +   G +  + +   +++
Sbjct: 406 LVLFQEMQIEGTK-PDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLIN 464

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY K   +  A ++F  +  K V +W ++I+G A +G  +++L  + EM   GV PNE+T
Sbjct: 465 MYMKLGCVEDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEIT 524

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           FV ++ AC H+GLV +G + F SMI+++ I P+++HY C++DLL R+G L EAE LI++M
Sbjct: 525 FVAVLGACRHMGLVDEGHRHFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESM 584

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P  PD  TW ALL ACK + + E G R+   L+ L P+     +LLSN+YAS   W  V 
Sbjct: 585 PMAPDVSTWGALLGACKKYGDNETGERIGRKLVELHPDHDGFNVLLSNIYASKGNWVDVL 644

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           +VR +M    V K PG S IE     H F AG+ +HP  + I  +L E+  ++K  GY P
Sbjct: 645 EVRGMMRQHGVVKTPGCSMIEAHGRVHEFLAGDKTHPQNEHIEHMLDEMAKKLKLEGYAP 704

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           DT  V  D++++EKE  LF HSE+LA+A+GL+   P T +R+VKNLR+C DCH   K+IS
Sbjct: 705 DTREVSLDIDEEEKETTLFRHSEKLAIAFGLIAIDPPTPIRIVKNLRICNDCHTAAKLIS 764

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +   REIVVRD  R+HHFK G CSC D+W
Sbjct: 765 KAFNREIVVRDRHRFHHFKQGSCSCMDYW 793



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 110/403 (27%), Positives = 193/403 (47%), Gaps = 66/403 (16%)

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           +++  Y Q N P K I ++  ML    +  D++ +  L ++C    A   GK +    + 
Sbjct: 96  TMMKGYMQRNSPCKAIWVYKFMLE-SNVAADNYTYPILFQSCSIRLAEFDGKCIQDHVLK 154

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
             F  D  ++++L++MYA CG  ++AR VFD   + + VSW +ML+ Y   G  ++A ++
Sbjct: 155 VGFDSDVYIQNTLINMYAVCGNLSDARKVFDGSSVLDMVSWNSMLAGYVLVGNVEEAKDV 214

Query: 194 FEQAPVRN-------------------------------LFLWTALVSGLVQSRNEIDAF 222
           +++ P RN                               L  W+AL+S   Q+    +A 
Sbjct: 215 YDRMPERNVIASNSMIVLFGKKGNVEEACKLFNEMKQKDLVSWSALISCYEQNEMYEEAL 274

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
             F EM   G+ +VD +V+ S++ AC+   V+  GK +HGLV+ +G E+ + + NA++ M
Sbjct: 275 ILFKEMNANGI-MVDEVVVLSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHM 333

Query: 283 YAKCSDIIAAKDIFGR-------------------------------MRRKDVVSWTSII 311
           Y+ C +++ A+ +F                                 M  KD VSW+++I
Sbjct: 334 YSSCEEVVTAQKLFSESCCLDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMI 393

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G AQ  +  ETL L+ EM   G KP+E   V +I AC+H+  + +G K   + I   G+
Sbjct: 394 SGYAQQDRFTETLVLFQEMQIEGTKPDETILVSVISACTHLAALDQG-KWIHAYIRKNGL 452

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
             ++   T L+++  + G +++A  + K +  E    TW AL+
Sbjct: 453 KINIILGTTLINMYMKLGCVEDALEVFKGLE-EKGVSTWNALI 494



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 162/387 (41%), Gaps = 72/387 (18%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L  L  C+R  + +T K +H  ++K+G+  Y  L N LI  Y  C+ V  A  L  E   
Sbjct: 293 LSVLSACSRLLVVITGKLVHGLVVKVGIETYVNLQNALIHMYSSCEEVVTAQKLFSESCC 352

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTM------------------------------L 96
            D +SW S+++ Y +    +K  ++F +M                              +
Sbjct: 353 LDQISWNSMISGYVKCGEIEKARALFDSMPDKDNVSWSAMISGYAQQDRFTETLVLFQEM 412

Query: 97  ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP 156
            ++  +PD  +  S++ AC  L A   GK +HA    +    + ++ ++L++MY K G  
Sbjct: 413 QIEGTKPDETILVSVISACTHLAALDQGKWIHAYIRKNGLKINIILGTTLINMYMKLGCV 472

Query: 157 NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF----EQAPVRNLFLWTALVS-- 210
            +A  VF  ++ K   +W A++   A +G    +++ F    E     N   + A++   
Sbjct: 473 EDALEVFKGLEEKGVSTWNALILGLAMNGLVDKSLKTFSEMKEHGVTPNEITFVAVLGAC 532

Query: 211 ---GLVQSRNEIDAFYSFIE----------------------MRREGVDIVDPLVLS--- 242
              GLV   +    F S I+                      M +E  ++++ + ++   
Sbjct: 533 RHMGLVDEGHR--HFNSMIQEHKIGPNIKHYGCMVDLLGRAGMLKEAEELIESMPMAPDV 590

Query: 243 ----SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
               +++GAC  +   E G++I   ++ L  +   F +  + ++YA   + +   ++ G 
Sbjct: 591 STWGALLGACKKYGDNETGERIGRKLVELHPDHDGF-NVLLSNIYASKGNWVDVLEVRGM 649

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLA 325
           MR+  VV      +  A HG+  E LA
Sbjct: 650 MRQHGVVKTPGCSMIEA-HGRVHEFLA 675


>gi|302800064|ref|XP_002981790.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
 gi|300150622|gb|EFJ17272.1| hypothetical protein SELMODRAFT_444974 [Selaginella moellendorffii]
          Length = 611

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 240/591 (40%), Positives = 349/591 (59%), Gaps = 46/591 (7%)

Query: 34  LHQY----GPLPN-----TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H+Y    G LPN      +I  YGKC  +  A    EE+  ++ V+W +++T Y     
Sbjct: 53  IHRYARISGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGR 112

Query: 85  PQKTISIFSTMLALDK-LQPDHFVFASLVKACGSLGATRLGKQVHACFVLS--PFCDDDV 141
            ++ + +F  M    +  +PD F F+  ++AC +L     G+++H            D V
Sbjct: 113 DREALELFREMCERSRSARPDKFSFSIAIEACSNLEDLEQGREIHEMLRREGKELHKDVV 172

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           V ++L++MY+KCG    AR VFDSI+   +SV W AM++AYA+ GR K A++++     R
Sbjct: 173 VGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAYAQHGRGKQALDLY-----R 227

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           ++   T L                     ++G  +       +++  CA  + L+ G+ I
Sbjct: 228 SMHDTTDLAP-------------------KQGTFV-------TVIDVCAELSALKQGRAI 261

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H  V A  +++ L +SNA+V MY KC  +  A D+F  M+ KD +SW +II   A HG +
Sbjct: 262 HARVRATNFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHS 321

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           ++ L LY EM   GVKP EVTFVGL+ ACSH GLV  G   F  M +D+ I PS+ H+ C
Sbjct: 322 DQALLLYQEMDLQGVKPTEVTFVGLLSACSHGGLVADGLDYFYRMQDDHRIKPSVPHFGC 381

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DLL R G L EAE ++K+MP + +   W +LL ACK H + + G R A+ ++   P  
Sbjct: 382 IIDLLGRGGRLAEAELVLKSMPIQANAVQWMSLLGACKTHGDLKRGVRAADQVVDRVPWT 441

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
              Y+LLSN+YA+A  W+ V K+RK+M+   VKK PG S+IE G   H F +G+ SHP  
Sbjct: 442 SGGYVLLSNIYAAAGRWKDVEKIRKIMAARGVKKSPGKSWIEIGDVVHEFVSGDRSHPQG 501

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG-T 559
           +EI+  L ++  EMK  GYVPDTSSV HD+E++EKE  L  HSE+LA+ YG +  VPG +
Sbjct: 502 EEIYVELGKMVEEMKGLGYVPDTSSVFHDLEEEEKEDLLVCHSEKLAIVYGNM-VVPGKS 560

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +LR+VKNLRVC DCH   K +SRIT R+IVVRDA R+H F++G CSC D+W
Sbjct: 561 MLRIVKNLRVCLDCHTATKFMSRITGRKIVVRDAARFHLFENGSCSCRDYW 611



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/381 (26%), Positives = 188/381 (49%), Gaps = 41/381 (10%)

Query: 76  LTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL--GKQVHACFVL 133
           + A++      + +  F  M    + +PD   F+ ++ A   +GA  +  G+++H    +
Sbjct: 1   MAAFSHNGCHSEALVFFRRMYQSGE-RPDRVTFSVILAAIAQMGAAAIDQGREIHRYARI 59

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
           S    + VV ++++ MY KCG  ++ARA F+ ++ KNSV+W AM++ Y   GR ++A+E+
Sbjct: 60  SGLLPNVVVGTAVISMYGKCGRLDDARAAFEELQWKNSVTWNAMMTNYKLDGRDREALEL 119

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
           F +   R              SR+     +SF                S  + AC+N   
Sbjct: 120 FREMCER--------------SRSARPDKFSF----------------SIAIEACSNLED 149

Query: 254 LELGKQIHGLVIALGYE--SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-DVVSWTSI 310
           LE G++IH ++   G E    + +  A+++MY+KC D+  A+ +F  +R   D V W ++
Sbjct: 150 LEQGREIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAM 209

Query: 311 IVGTAQHGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           I   AQHG+ ++ L LY  M  +  + P + TFV +I  C+ +  + +GR +  + +   
Sbjct: 210 IAAYAQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAI-HARVRAT 268

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
               +L     L+ +  + G LDEA ++  +M  + DE +W  ++S+  +H +++    +
Sbjct: 269 NFDANLLVSNALVHMYGKCGCLDEALDVFHSMKLK-DEISWNTIISSYAYHGHSDQALLL 327

Query: 430 ANH--LLSLKPEDPSSYILLS 448
                L  +KP + +   LLS
Sbjct: 328 YQEMDLQGVKPTEVTFVGLLS 348



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 96/183 (52%), Gaps = 3/183 (1%)

Query: 23  KTLHAQIIKLG--LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR-DHVSWASILTAY 79
           + +H  + + G  LH+   +   L++ Y KC  ++ A  + + +    D V W +++ AY
Sbjct: 154 REIHEMLRREGKELHKDVVVGTALLNMYSKCGDLEEARKVFDSIRHDADSVCWNAMIAAY 213

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            Q    ++ + ++ +M     L P    F +++  C  L A + G+ +HA    + F  +
Sbjct: 214 AQHGRGKQALDLYRSMHDTTDLAPKQGTFVTVIDVCAELSALKQGRAIHARVRATNFDAN 273

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
            +V ++LV MY KCG  + A  VF S+KLK+ +SW  ++S+YA  G    A+ ++++  +
Sbjct: 274 LLVSNALVHMYGKCGCLDEALDVFHSMKLKDEISWNTIISSYAYHGHSDQALLLYQEMDL 333

Query: 200 RNL 202
           + +
Sbjct: 334 QGV 336


>gi|225454494|ref|XP_002276948.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Vitis vinifera]
          Length = 913

 Score =  428 bits (1101), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/675 (33%), Positives = 364/675 (53%), Gaps = 76/675 (11%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C +       K +H  + + GL     L N LI  Y K   ++ A  + + M  R+ 
Sbjct: 241 LQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNT 300

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPD----------HFV------------ 107
            SW S++++Y          S+F  + + D ++PD          HF+            
Sbjct: 301 SSWNSMISSYAALGFLNDAWSLFYELESSD-MKPDIVTWNCLLSGHFLHGYKEEVLNILQ 359

Query: 108 -------------FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
                          S+++A   LG   +GK+ H   + + F  D  V +SL+DMY K  
Sbjct: 360 RMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNH 419

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP---------------- 198
              +A+AVFD++K +N  +W +++S Y+  G  +DA+ +  Q                  
Sbjct: 420 SLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMIS 479

Query: 199 -----------------------VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
                                    N+  WTAL+SG  Q+ N  D+   F +M++EGV +
Sbjct: 480 GYAMWGCGKEALAVLHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGV-M 538

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
            +   ++ ++ ACA+ ++L+ GK+IH L I  G+   +F++ A++DMY+K S +  A  +
Sbjct: 539 PNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKV 598

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
           F R++ K + SW  +I+G A  G  +E +++++EM   GV P+ +TF  L+ AC + GL+
Sbjct: 599 FRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLI 658

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
           G+G K F SMI DY I P L+HY C++DLL R+G+LDEA +LI  MP +PD   W ALL 
Sbjct: 659 GEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLG 718

Query: 416 ACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKE 475
           +C+ H+N +     A +L  L+P + ++YIL+ N+Y+    W+ +  +R+LM    V+  
Sbjct: 719 SCRIHKNLKFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNR 778

Query: 476 PGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEK 535
             +S+I+  +  H+F + E  HP   +I+  L +L +EMK+ GYVPD + V  +M++ EK
Sbjct: 779 QVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEK 838

Query: 536 ERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATR 595
           ++ L  H+E+LA+ YGL+K   G  +RV+KN R+C DCH   K IS +  RE+ +RD  R
Sbjct: 839 QKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVR 898

Query: 596 YHHFKDGKCSCNDFW 610
           +HHF++GKCSCNDFW
Sbjct: 899 FHHFREGKCSCNDFW 913



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 232/467 (49%), Gaps = 21/467 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C R         +H  +IK G      L   L++ YG+C  ++ A+ +  EMP  + 
Sbjct: 140 LKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEA 199

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           + W   +    Q+   QK + +F  M     L+ +      +++ACG +GA    KQ+H 
Sbjct: 200 LLWNEAIILNLQSEKLQKGVELFRKM-QFSFLKAETATIVRVLQACGKMGALNAAKQIHG 258

Query: 130 CFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
            +V     D DV + + L+ MY+K G    AR VFDS++ +N+ SW +M+S+YA  G   
Sbjct: 259 -YVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLN 317

Query: 189 DAMEIF---EQAPVR-NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           DA  +F   E + ++ ++  W  L+SG      + +       M+ EG    +   ++S+
Sbjct: 318 DAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFK-PNSSSMTSV 376

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + A +    L +GK+ HG V+  G++  +++  +++DMY K   + +A+ +F  M+ +++
Sbjct: 377 LQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNI 436

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
            +W S++ G +  G  E+ L L ++M   G+KP+ VT+ G+I   S   + G G++    
Sbjct: 437 FAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMI---SGYAMWGCGKEALAV 493

Query: 365 M--IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE---PDEPTWAALLSACKH 419
           +   +  G+TP++  +T L+   S++G+  ++      M  E   P+  +   LL AC  
Sbjct: 494 LHQTKSLGLTPNVVSWTALISGSSQAGNNRDSLKFFAQMQQEGVMPNSASITCLLRACAS 553

Query: 420 HRNTEMGTRVANHLLSLKP---EDPSSYILLSNVYASAAMWQHVSKV 463
               + G  +  H LS++    ED      L ++Y+ ++  ++  KV
Sbjct: 554 LSLLQKGKEI--HCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKV 598



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 115/552 (20%), Positives = 217/552 (39%), Gaps = 101/552 (18%)

Query: 21  TVKTLHAQIIKLGLHQYGP--LPNTLIDAY-GKCDLVQYAHHLLEEMPQRDHVSWASILT 77
           +VK +HAQ+IKL   ++ P      LI +Y G  D    A      +P R+++ W S + 
Sbjct: 48  SVKMMHAQMIKLP-QKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLP-RNYLKWNSFVE 105

Query: 78  AY-NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
            + + A      + +F  +     +  D  V++  +K C  +    LG ++H C +   F
Sbjct: 106 EFKSSAGSLHIVLEVFKELHG-KGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGF 164

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             D  ++ +L++ Y +C     A  VF  +    ++ W   +    +S + +  +E+F +
Sbjct: 165 DLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRK 224

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
                                     +SF  ++ E   IV       ++ AC     L  
Sbjct: 225 MQ------------------------FSF--LKAETATIV------RVLQACGKMGALNA 252

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-------------- 302
            KQIHG V   G +S + + N ++ MY+K   +  A+ +F  M  +              
Sbjct: 253 AKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAA 312

Query: 303 ---------------------DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
                                D+V+W  ++ G   HG  EE L +   M   G KPN  +
Sbjct: 313 LGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSS 372

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
              ++ A S +G +  G++    ++ + G    +   T L+D+  ++  L  A+ +   M
Sbjct: 373 MTSVLQAISELGFLNMGKETHGYVLRN-GFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNM 431

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHL--LSLKPEDPSSYILLSNVYASAAMWQH 459
               +   W +L+S        E   R+ N +    +KP+     +  + + +  AMW  
Sbjct: 432 K-NRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPD----LVTWNGMISGYAMW-- 484

Query: 460 VSKVRKLMSVMEVKKEPGY-----SYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEM 514
               ++ ++V+   K  G      S+     GS    AG     LK           A+M
Sbjct: 485 -GCGKEALAVLHQTKSLGLTPNVVSWTALISGSS--QAGNNRDSLK---------FFAQM 532

Query: 515 KRRGYVPDTSSV 526
           ++ G +P+++S+
Sbjct: 533 QQEGVMPNSASI 544


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein At2g39620-like
            [Vitis vinifera]
          Length = 1005

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 219/602 (36%), Positives = 326/602 (54%), Gaps = 34/602 (5%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L  CA   +    K++H   +K  +         L+  Y KC     A      M  RD 
Sbjct: 437  LPACADLSLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDI 496

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            V+W S++  Y Q   P   I +F   L L  + PD      +V AC  L     G  +H 
Sbjct: 497  VTWNSLINGYAQIGDPYNAIDMFYK-LRLSAINPDAGTMVGVVPACALLNDLDQGTCIHG 555

Query: 130  CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARSGRKK 188
              V   F  D  VK++L+DMYAKCG   +A  +F+     K+ V+W  +++AY ++G  K
Sbjct: 556  LIVKLGFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAK 615

Query: 189  DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            +A+                                SF +MR E     + +   S++ A 
Sbjct: 616  EAIS-------------------------------SFHQMRLENFH-PNSVTFVSVLPAA 643

Query: 249  ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
            A  A    G   H  +I +G+ S   + N+++DMYAKC  +  ++ +F  M  KD VSW 
Sbjct: 644  AYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWN 703

Query: 309  SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            +++ G A HG  +  +AL+  M  + V+ + V+FV ++ AC H GLV +GRK+F SM + 
Sbjct: 704  AMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDK 763

Query: 369  YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
            Y I P L+HY C++DLL R+G  DE    IK MP EPD   W ALL +C+ H N ++G  
Sbjct: 764  YHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEV 823

Query: 429  VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
              +HL+ L+P +P+ +++LS++YA +  W    K R  M+ + +KK PG S++E     H
Sbjct: 824  ALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWVELKNKVH 883

Query: 489  IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
             F  G+ SHP  + +  L   L  +M++ GYVPD S VL ++E+++KE  L+ HSERLA+
Sbjct: 884  AFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYSHSERLAI 943

Query: 549  AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
             + LL + PG+ +++VKNLRVC DCH   K IS+IT R I+VRDATR+HHF+DG CSCND
Sbjct: 944  TFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFEDGICSCND 1003

Query: 609  FW 610
            +W
Sbjct: 1004 YW 1005



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 115/444 (25%), Positives = 201/444 (45%), Gaps = 40/444 (9%)

Query: 12  VCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVS 71
           +C    I L  +++H  + +        + N LID Y KC  V  A  + ++M  +D VS
Sbjct: 240 ICKLSNIEL-CRSIHGYVFRRDFSS--AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVS 296

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
           W +++  Y       + + +F  M  L  ++ +     S   A         GK++H C 
Sbjct: 297 WGTMMAGYAHNGCFVEVLELFDKM-KLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCA 355

Query: 132 VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
           +      D +V + L+ MYAKC                               G  + A 
Sbjct: 356 LQQRIDSDILVATPLMVMYAKC-------------------------------GETEKAK 384

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
           ++F     R+L  W+A+++ LVQ+    +A   F EM+ + +   + + L SI+ ACA+ 
Sbjct: 385 QLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMK-PNRVTLMSILPACADL 443

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
           ++L+LGK IH   +    +S L    A+V MYAKC    AA   F RM  +D+V+W S+I
Sbjct: 444 SLLKLGKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLI 503

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G AQ G     + ++ ++  + + P+  T VG++ AC+ +  + +G      +I   G 
Sbjct: 504 NGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQG-TCIHGLIVKLGF 562

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
                    L+D+ ++ G L  AE L     F  DE TW  +++A  + +N      +++
Sbjct: 563 ESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAA--YMQNGHAKEAISS 620

Query: 432 -HLLSLKPEDPSSYILLSNVYASA 454
            H + L+   P+S   +S + A+A
Sbjct: 621 FHQMRLENFHPNSVTFVSVLPAAA 644



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 188/392 (47%), Gaps = 37/392 (9%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
            H +I + GL +   +   L+D Y K   ++ A  + ++MP+RD V+W +++   +Q+  
Sbjct: 151 FHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSED 210

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P + +  F +M  L  ++P      +L      L    L + +H       F     V +
Sbjct: 211 PCEAVDFFRSM-QLVGVEPSSVSLLNLFPGICKLSNIELCRSIHGYVFRRDF--SSAVSN 267

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
            L+D+Y+KCG  + AR VFD +  ++ VSW  M++ YA +G   + +E+F++  + N+ +
Sbjct: 268 GLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRI 327

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                       N++ A  +F+                    A A    LE GK+IHG  
Sbjct: 328 ------------NKVSAVSAFL--------------------AAAETIDLEKGKEIHGCA 355

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           +    +S + ++  ++ MYAKC +   AK +F  ++ +D+V+W++II    Q G  EE L
Sbjct: 356 LQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEAL 415

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
           +L+ EM +  +KPN VT + ++ AC+ + L+  G+ +    ++   +   L   T L+ +
Sbjct: 416 SLFQEMQNQKMKPNRVTLMSILPACADLSLLKLGKSIHCFTVK-ADMDSDLSTGTALVSM 474

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            ++ G    A      M    D  TW +L++ 
Sbjct: 475 YAKCGFFTAALTTFNRMS-SRDIVTWNSLING 505



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 194/416 (46%), Gaps = 44/416 (10%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYG---KCDLVQYAHHL 60
           ++YLH  R+ +  +    +  +HAQII  G   +  + + LI+ Y    KCDL   A  +
Sbjct: 30  TNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSITH-LINLYSLFHKCDL---ARSV 85

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
            +  P    + W S++ AY ++    + + ++  M+    L+PD + F  ++KAC     
Sbjct: 86  FDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVE-KGLEPDKYTFTFVLKACTGALN 144

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
            + G   H          D  + + LVDMY+K G    AR VFD +  ++ V+W AM   
Sbjct: 145 LQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAM--- 201

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
                                       ++GL QS +  +A   F  M+  GV+     +
Sbjct: 202 ----------------------------IAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSL 233

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           L+   G C   + +EL + IHG V    + S   +SN ++D+Y+KC D+  A+ +F +M 
Sbjct: 234 LNLFPGIC-KLSNIELCRSIHGYVFRRDFSSA--VSNGLIDLYSKCGDVDVARRVFDQMV 290

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            +D VSW +++ G A +G   E L L+D+M    V+ N+V+ V    A +    + KG++
Sbjct: 291 DQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKE 350

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +    ++   I   +   T L+ + ++ G  ++A+ L   +    D   W+A+++A
Sbjct: 351 IHGCALQQR-IDSDILVATPLMVMYAKCGETEKAKQLFWGLQGR-DLVAWSAIIAA 404



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 121/254 (47%), Gaps = 7/254 (2%)

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            K+  S T +++ Y+   +   A  +F+  P  +  LW +++    +S+   +A   +  
Sbjct: 60  FKHHHSITHLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYC 119

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M  +G++  D    + ++ AC     L+ G   HG +   G E  +FI   +VDMY+K  
Sbjct: 120 MVEKGLE-PDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMG 178

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
           D+  A+++F +M ++DVV+W ++I G +Q     E +  +  M   GV+P+ V+ + L  
Sbjct: 179 DLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFP 238

Query: 348 ACSHVGLVGKGRKLFKSMI-EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
               +  +   R +   +   D+    S      L+DL S+ G +D A  +   M  + D
Sbjct: 239 GICKLSNIELCRSIHGYVFRRDFSSAVS----NGLIDLYSKCGDVDVARRVFDQM-VDQD 293

Query: 407 EPTWAALLSACKHH 420
           + +W  +++   H+
Sbjct: 294 DVSWGTMMAGYAHN 307


>gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
 gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Cucumis sativus]
          Length = 604

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/612 (38%), Positives = 347/612 (56%), Gaps = 45/612 (7%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL------VQYAHHL 60
           LH L + ++      +K + A  IK  L     +   LI+    C L      + +AHHL
Sbjct: 30  LHPLSLLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINF---CTLNPTTSYMDHAHHL 86

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
            +++  +D + +  +   Y ++N P    S+F  +L    L PD + F+SL+KAC S  A
Sbjct: 87  FDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLC-SGLLPDDYTFSSLLKACASSKA 145

Query: 121 TRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
            R G  +H CF +    + ++ +  +L++MYA+C   N AR VFD ++    VS+ A+++
Sbjct: 146 LREGMGLH-CFAVKLGLNHNIYICPTLINMYAECNDMNAARGVFDEMEQPCIVSYNAIIT 204

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
            YARS +  +A+ +F +    N+                            E  D+    
Sbjct: 205 GYARSSQPNEALSLFRELQASNI----------------------------EPTDV---- 232

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
            + S++ +CA    L+LGK IH  V   G++  + ++ A++DM+AKC  +  A  IF  M
Sbjct: 233 TMLSVIMSCALLGALDLGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGM 292

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
           R +D  +W+++IV  A HG   + +++++EM   GV+P+E+TF+GL+YACSH GLV +GR
Sbjct: 293 RVRDTQAWSAMIVAFATHGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGR 352

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
             F SM + YGITP ++HY C++DLL R+GHLDEA N +  +  +     W  LLSAC  
Sbjct: 353 GYFYSMSKTYGITPGIKHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACST 412

Query: 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
           H N EM  RV   +  L       Y++LSN+YA    W+ V+ +RKLM    V K PG S
Sbjct: 413 HGNVEMAKRVIERIFELDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCS 472

Query: 480 YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH-DMEQKEKERQ 538
            +E     H F++G+  H +  E+   L EL  E+K  GYVPDTS V H DME++ KE  
Sbjct: 473 SVEVNNVVHEFFSGDGVHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELV 532

Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
           L +HSE+LA+A+GLL + PGT +RV KNLR+CGDCH   K+IS I  R+IV+RD  R+H 
Sbjct: 533 LRYHSEKLAMAFGLLNTPPGTTIRVAKNLRICGDCHNAAKLISFIFGRKIVIRDVQRFHR 592

Query: 599 FKDGKCSCNDFW 610
           F+DGKCSC DFW
Sbjct: 593 FEDGKCSCGDFW 604


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/588 (37%), Positives = 331/588 (56%), Gaps = 33/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +++HA + K G      + N L+  Y K   V     L E M  RD +SW + L+  +  
Sbjct: 435 QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDC 494

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            +  + ++IF  ML  +   P+ + F S++ +C  L     G+QVHA  + +   D++ V
Sbjct: 495 GMYDRPLTIFYHMLE-EGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFV 553

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+DMY                               A+    +DA   F +  VR+L
Sbjct: 554 CTALIDMY-------------------------------AKCMYLEDADVAFNRLSVRDL 582

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
           F WT +++   Q+     A   F +M++EGV   +   L+  +  C++ A LE G+Q+H 
Sbjct: 583 FTWTVIITNYAQTNQGEKALNYFRQMQQEGVK-PNEFTLAGCLSGCSSLASLEGGQQLHS 641

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           +V   G+ S +F+ +A+VDMYAKC  +  A+ +F  + R+D ++W +II G AQ+GQ  +
Sbjct: 642 MVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNK 701

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L  +  M+  G+ P+ VTF G++ ACSH GLV +G++ F SM  D+GI+P++ H  C++
Sbjct: 702 ALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMV 761

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+L R G  DE E+ I+ M    +   W  +L A K H N  +G + AN L  L+PE+ S
Sbjct: 762 DILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEES 821

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           SYILLSN++A+   W  V +VR LMS   VKKEPG S++E     H F + + SHP   E
Sbjct: 822 SYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQE 881

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I   L ELD E+    YVP T  VLH++ + EK+  L +HSERLA+ + L+ +     +R
Sbjct: 882 IHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIR 941

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + KNLR+C DCH VMK IS IT +EIVVRD  R+HHFK+G CSCNDFW
Sbjct: 942 IFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSCNDFW 989



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 200/415 (48%), Gaps = 35/415 (8%)

Query: 2   QISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
           ++ +Y   LR CA  +     K +H  I+K  ++    L  +L++ Y KC    YA  +L
Sbjct: 111 KLKYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVL 170

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
            +MP RD VSW +++           +I +F  M   + + P+ F  A+ +KAC    A 
Sbjct: 171 AKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQN-EGIMPNEFTLATGLKACSLCMAL 229

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
            LGKQ+HA         D  V S+LVD+YAKCG    A  +F  +  +N V+W  +L+ Y
Sbjct: 230 DLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGY 289

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
           A+ G                       V+G+++       F S +E+  +     +   L
Sbjct: 290 AQRGD----------------------VTGVLK------LFCSMMELDVK----CNEFTL 317

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           ++++  CAN   L+ G+ IH L+I  GYE   FI   +VDMY+KC   I A  +F  +++
Sbjct: 318 TTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKK 377

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
            D+V W+++I    Q GQ+EE++ L+  M      PN+ T   L+ A ++ G +  G+ +
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSI 437

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             + +  YG    +     L+ +  ++G + +   L ++M  + D  +W A LS 
Sbjct: 438 -HACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSG 490



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 205/430 (47%), Gaps = 48/430 (11%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HAQ  KLGL     + + L+D Y KC  ++ A  +   MP+++ V+W  +L  Y Q 
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQR 292

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 + +F +M+ LD ++ + F   +++K C +    + G+ +H+  +   +  ++ +
Sbjct: 293 GDVTGVLKLFCSMMELD-VKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFI 351

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
              LVDMY+KCGL  +A  VF +IK  + V W+A+++   + G+ ++++++F        
Sbjct: 352 GCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFH------- 404

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                    + R G  + +   + S++ A  N   L+ G+ IH 
Sbjct: 405 -------------------------LMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHA 439

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            V   G+E+ + +SNA+V MY K   +     ++  M  +D++SW + + G    G  + 
Sbjct: 440 CVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDR 499

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK----LFKSMIEDYGITPSLQHY 378
            L ++  M+  G  PN  TF+ ++ +CS +  V  GR+    + K+ ++D          
Sbjct: 500 PLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC----- 554

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
           T L+D+ ++  +L++A+     +    D  TW  +++   ++  T  G +  N+   ++ 
Sbjct: 555 TALIDMYAKCMYLEDADVAFNRLSVR-DLFTWTVIIT---NYAQTNQGEKALNYFRQMQQ 610

Query: 439 E--DPSSYIL 446
           E   P+ + L
Sbjct: 611 EGVKPNEFTL 620



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 165/347 (47%), Gaps = 35/347 (10%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           ++S+++ C S  +  + K +H   V      D  +  SLV++YAKC              
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKC-------------- 160

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
                      SAYAR         +  + P R++  WTAL+ GLV      D+ Y F E
Sbjct: 161 ---------RYSAYARL--------VLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQE 203

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M+ EG+ + +   L++ + AC+    L+LGKQ+H     LG    LF+ +A+VD+YAKC 
Sbjct: 204 MQNEGI-MPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCG 262

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
           +I  A  +F  M  ++ V+W  ++ G AQ G     L L+  M+   VK NE T   ++ 
Sbjct: 263 EIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLK 322

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
            C++   + +G ++  S+I   G   +      L+D+ S+ G   +A  + K +  +PD 
Sbjct: 323 GCANSKNLKQG-QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDI 380

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454
             W+AL++       +E   ++  HL+ L    P+ Y + S + A+ 
Sbjct: 381 VVWSALITCLDQQGQSEESIKLF-HLMRLGDTLPNQYTICSLLSAAT 426


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 209/601 (34%), Positives = 337/601 (56%), Gaps = 34/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CA+ +     + +HA + +  L     L N+LI  Y KC  V  A H+ ++MP RD 
Sbjct: 67  IAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDV 126

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW  ++  Y Q  +P + I +   ML   + +P+ F F SL+KA G+ G   +G+Q+HA
Sbjct: 127 VSWTYLIAGYAQNYMPAEAIGLLPDMLRA-RFRPNGFTFTSLLKATGACGGCSIGEQMHA 185

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V   + +D  V S+L+DMYA                               R  +   
Sbjct: 186 LAVKYNWDEDVYVGSALLDMYA-------------------------------RCEQMDM 214

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +F++   +N   W AL++G  +  +       F EM+R G         SS+  A A
Sbjct: 215 AIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATH-FTYSSMFSAFA 273

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LE G+ +H  +I  G +   F+ N ++ MYAK   ++ A+ +F RM ++D+V+W +
Sbjct: 274 RIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNT 333

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           ++   AQ+G  +E +A ++E+   G++ N++TF+ ++ ACSH GLV +G+  F  M++DY
Sbjct: 334 MLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYF-DMMKDY 392

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            + P + HY   +DLL R+G L EA   +  MP EP    W ALL AC+ H+N +MG   
Sbjct: 393 NVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYA 452

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A+H+  L P+D    +LL N+YAS   W   ++VRK+M    VKKEP  S+++     H+
Sbjct: 453 ADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSVHM 512

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F A + +HP   +I+ +  E++  +K+ GYVP+T+ VL  + ++E+E +L +HSE++A+A
Sbjct: 513 FVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVLLHINEQERETKLKYHSEKIALA 572

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + L+    G  +R++KN+R+CGDCH   K +S++ KREIVVRD  R+HHF +G CSC D+
Sbjct: 573 FALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKREIVVRDTNRFHHFSEGSCSCGDY 632

Query: 610 W 610
           W
Sbjct: 633 W 633



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 150/322 (46%), Gaps = 34/322 (10%)

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
           +L   +L P   ++ S++ AC         + +HA    S    D  + +SL+ MY KCG
Sbjct: 50  LLHAGELAPTPRLYHSIIAACAQFKNLAGARAIHAHLSRSCLAGDAFLLNSLIHMYCKCG 109

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
             ++AR VFD +  ++ VSWT +++ YA++    +A+                L+  +++
Sbjct: 110 AVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAI---------------GLLPDMLR 154

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF 274
           +R            R  G      L  +   G C+      +G+Q+H L +   ++  ++
Sbjct: 155 AR-----------FRPNGFTFTSLLKATGACGGCS------IGEQMHALAVKYNWDEDVY 197

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
           + +A++DMYA+C  +  A  +F R+  K+ VSW ++I G A+    E TL  + EM   G
Sbjct: 198 VGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNG 257

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
                 T+  +  A + +G + +GR +   +I+      +    T +L + ++SG + +A
Sbjct: 258 FGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNT-MLGMYAKSGSMVDA 316

Query: 395 ENLIKAMPFEPDEPTWAALLSA 416
             +   M  + D  TW  +L+A
Sbjct: 317 RKVFDRMD-KRDLVTWNTMLTA 337


>gi|224137994|ref|XP_002322703.1| predicted protein [Populus trichocarpa]
 gi|222867333|gb|EEF04464.1| predicted protein [Populus trichocarpa]
          Length = 627

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/597 (37%), Positives = 342/597 (57%), Gaps = 36/597 (6%)

Query: 15  RHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWAS 74
           R +  L  + +HA IIK GL     + + LI+ Y K  L   +  + EE  ++   +W+S
Sbjct: 66  RSRSLLKGQQIHAHIIKSGLQVIPLVCHYLINFYSKTQLPLLSSQVFEESERKSSTTWSS 125

Query: 75  ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134
           +++++ Q   P   I  F  M+  + L PD  +F S  KAC  LG   +GK VH C V+ 
Sbjct: 126 VISSFAQNEEPVLAIQYFCRMIG-ENLCPDDHIFPSATKACAILGRCDVGKSVH-CLVIK 183

Query: 135 PFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
              D DV V SSLVDMYAKCG                                 K+A  +
Sbjct: 184 TGYDVDVFVGSSLVDMYAKCG-------------------------------DIKEARNV 212

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
           F++ P RN+  W+ ++ G  Q     +A   F E   EG+D+ D   LSS++  C +  +
Sbjct: 213 FDEMPHRNVVSWSGMIYGYTQLGEHEEAMRLFKEALLEGLDVND-FTLSSVIRVCGSATL 271

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           LELGKQIHGL     Y+   F+ ++++ +Y+KC  I  A  +F  +  K++  W ++++ 
Sbjct: 272 LELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNLGMWNAMLIA 331

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
            AQH   +E   L+ +M +AG++PN +TF+ ++YACSH GLV +G+K F ++++ Y I P
Sbjct: 332 CAQHAHTKEAFDLFTKMENAGMRPNFITFLCVLYACSHAGLVEEGKKYF-ALMKKYEIEP 390

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
             QHY  ++DLL R+G L EA ++IK MP EP E  W A ++ C+ H NT++    A+ +
Sbjct: 391 GTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITGCRIHGNTDLAAFAADKV 450

Query: 434 LSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAG 493
             L       +++LSN YA+A  ++  +K RK++    VKKE G S+IE G   H F AG
Sbjct: 451 FELGAVSSGLHVMLSNAYAAAGRYEDAAKARKMLRDRGVKKETGLSWIEEGNRVHKFAAG 510

Query: 494 ETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLL 553
           +  H    EI++ L +L  EM+R GYV DTS VL ++  +EK + + +HSERLA+A+GL+
Sbjct: 511 DRFHVRMKEIYQKLEDLGEEMERAGYVADTSFVLREVGSEEKNQTIRYHSERLAIAFGLI 570

Query: 554 KSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
               G  +R++KNLRVCGDCH  +K IS+++ R I+VRD  R+H F+DGKCSC D+W
Sbjct: 571 SIPLGRPIRIMKNLRVCGDCHNAIKFISKLSGRVIIVRDNNRFHRFEDGKCSCADYW 627



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 2/172 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +RVC    +    K +H    K      G + ++LI  Y KC L++ A+ + +E+P ++ 
Sbjct: 263 IRVCGSATLLELGKQIHGLCFKTSYDLSGFVGSSLISLYSKCGLIEGAYRVFDEVPIKNL 322

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
             W ++L A  Q    ++   +F+ M     ++P+   F  ++ AC   G    GK+  A
Sbjct: 323 GMWNAMLIACAQHAHTKEAFDLFTKMENAG-MRPNFITFLCVLYACSHAGLVEEGKKYFA 381

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSA 180
                         +S+VD+  + G    A +V   +  + + S W A ++ 
Sbjct: 382 LMKKYEIEPGTQHYASMVDLLGRAGKLQEALSVIKGMPTEPTESVWGAFITG 433


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/620 (36%), Positives = 336/620 (54%), Gaps = 52/620 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLG-----------LHQYGPLPNT--------LIDAYGK 50
           L+ CA   ++    +LHA  I+ G           L+ Y  +P +        ++D  G 
Sbjct: 57  LKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGS 116

Query: 51  CDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFAS 110
               +    + +EM +RD VSW +++    +     + +  F   +  +  +PD F  ++
Sbjct: 117 STAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALG-FVRKMCREGFRPDSFTLST 175

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN 170
           ++         + G +VH     + F  D  V SSL+DMYA C                 
Sbjct: 176 VLPIFAECADVKRGLEVHGFAFRNGFDSDVFVGSSLIDMYANCT---------------- 219

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
                          R   ++++F+  PVR+  LW +L++G  Q+ +  +A   F  M +
Sbjct: 220 ---------------RTDYSVKVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQ 264

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290
            GV  V P+  SS++  C N A L  GKQ+H  VI  G+E  +FIS++++DMY KC +I 
Sbjct: 265 AGVRPV-PVTFSSLIPVCGNLASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEIS 323

Query: 291 AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350
            A  IF +M   DVVSWT++I+G A HG A E L L++ M     KPN +TF+ ++ ACS
Sbjct: 324 IAHCIFDKMSSPDVVSWTAMIMGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACS 383

Query: 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTW 410
           H GLV KG K FKSM   YGI P+L+H+  L D L R+G LDEA N I  M  +P    W
Sbjct: 384 HAGLVDKGWKYFKSMSNHYGIVPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVW 443

Query: 411 AALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470
           + LL AC+ H+NT +   VA  ++ L+P    S+++LSN+Y+++  W   + +R+ M   
Sbjct: 444 STLLRACRVHKNTMLAEEVAKKIMELEPRSIGSHVVLSNMYSASGRWNEAAHLRESMRKK 503

Query: 471 EVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDM 530
            +KK+P  S+IE     H+F A + SHP  D I + L     +M R G+VP+T  V  D+
Sbjct: 504 GMKKDPACSWIEVKSKLHVFVAHDRSHPWYDRIIDALNAFSEQMAREGHVPNTEDVFQDI 563

Query: 531 EQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVV 590
           E++ K   L  HSE+LA+ +G++ +  GT +RV+KNLRVC DCH V K IS++  REIVV
Sbjct: 564 EEEHKSYVLCGHSEKLAIVFGIISTPAGTKIRVMKNLRVCIDCHTVTKFISKLADREIVV 623

Query: 591 RDATRYHHFKDGKCSCNDFW 610
           RDA R+HHFKDG CSC DFW
Sbjct: 624 RDANRFHHFKDGNCSCGDFW 643



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 54/250 (21%), Positives = 103/250 (41%), Gaps = 22/250 (8%)

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD-PLVLSSIVGACANFAVLELGKQIHGL 263
           W   +       +  DA   F+ MR         P  L + + +CA   +  LG  +H L
Sbjct: 16  WAQQIRAAAAEGHFCDAVSLFLRMRASAAPRSSVPASLPAALKSCAALGLSALGASLHAL 75

Query: 264 VIALGYESCLFISNAIVDMYAK--CS----------DIIAA-------KDIFGRMRRKDV 304
            I  G  +  F +NA++++Y K  CS          D+  +       + +F  M  +DV
Sbjct: 76  AIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAIVDVPGSSTAFESVRKVFDEMIERDV 135

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           VSW ++++G A+ G+  E L    +M   G +P+  T   ++   +    V +G ++   
Sbjct: 136 VSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDSFTLSTVLPIFAECADVKRGLEVHGF 195

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
              + G    +   + L+D+ +     D +  +   +P   D   W +LL+ C  + + E
Sbjct: 196 AFRN-GFDSDVFVGSSLIDMYANCTRTDYSVKVFDNLPVR-DHILWNSLLAGCAQNGSVE 253

Query: 425 MGTRVANHLL 434
               +   +L
Sbjct: 254 EALGIFRRML 263


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 233/635 (36%), Positives = 351/635 (55%), Gaps = 68/635 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNT-------------------------- 43
            + C + +     K LHA  +KL LH + P  +T                          
Sbjct: 138 FKSCTKAKATHEGKQLHAHALKLALH-FNPHVHTSVIHMYASVGEMDFARLVFDKSSLRD 196

Query: 44  ------LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLA 97
                 LI  Y     +  A  L +E+P +D VSW ++++ Y Q+   ++ I  F  M  
Sbjct: 197 AVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQE 256

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
            + L P+      ++ ACG   +  LGK + +    + F  +  + ++L+DMY KCG  +
Sbjct: 257 ANVL-PNKSTMVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETD 315

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
            AR +FD I+ K+ +SW  M+  Y+     ++A+ +FE                      
Sbjct: 316 IARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEV--------------------- 354

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA-LGYESCLFIS 276
                     M R  V   D   L  I+ ACA    L+LGK +H  +   L   S   + 
Sbjct: 355 ----------MLRSNVKPNDVTFLG-ILHACACLGALDLGKWVHAYIDKNLRNSSNASLW 403

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV- 335
            +++DMYAKC  I AA+ +F  M  +++ SW +++ G A HG AE  LAL+ EMV+ G+ 
Sbjct: 404 TSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLF 463

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
           +P+++TFVG++ AC+  GLV  G + F+SMI+DYGI+P LQHY C++DLL+R+   +EAE
Sbjct: 464 RPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQHYGCMIDLLARAEKFEEAE 523

Query: 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
            L+K M  EPD   W +LLSACK H   E G  VA  L  L+PE+  +++LLSN+YA A 
Sbjct: 524 ILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQLEPENAGAFVLLSNIYAGAG 583

Query: 456 MWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK 515
            W  V+++R  ++   +KK PG + IE     H F  G+  HP  + I+++L E+D  ++
Sbjct: 584 RWDDVARIRTRLNDKGMKKVPGCTSIEIDGDVHEFLVGDKFHPECNNIYKMLNEVDKLLE 643

Query: 516 RRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHI 575
             G+VP+TS VL+DM+++ KE  L  HSE+LA+++GL+K+ PGT +R+VKNLRVCG+CH 
Sbjct: 644 ENGFVPNTSEVLYDMDEEWKEGALSQHSEKLAISFGLIKTKPGTTIRIVKNLRVCGNCHS 703

Query: 576 VMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             K+IS+I  REI+ RD  R+HHFKDG CSCND W
Sbjct: 704 ATKLISKIFNREIIARDRNRFHHFKDGFCSCNDCW 738



 Score =  201 bits (511), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 139/451 (30%), Positives = 244/451 (54%), Gaps = 14/451 (3%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLID--AYGKCDLVQYAHHLLEE 63
           YL+ L  C       T K +H+ IIK GL+    + + LI   A      + YA  L EE
Sbjct: 31  YLNLLEKCKNIN---TFKQIHSLIIKTGLNNTVFVQSKLIHFCAVSPSGDLSYALSLFEE 87

Query: 64  MPQR---DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
             Q    +   W S++  Y+ ++ P  ++ +FS ML    +QP+   F  L K+C    A
Sbjct: 88  NQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSRMLYYG-VQPNSHTFPFLFKSCTKAKA 146

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
           T  GKQ+HA  +      +  V +S++ MYA  G  + AR VFD   L+++VS+TA+++ 
Sbjct: 147 THEGKQLHAHALKLALHFNPHVHTSVIHMYASVGEMDFARLVFDKSSLRDAVSFTALITG 206

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           Y   G   DA  +F++ PV+++  W A++SG VQS    +A   F EM+   V + +   
Sbjct: 207 YVSQGCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANV-LPNKST 265

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           +  ++ AC +    ELGK I   V   G+ S L ++NA++DMY KC +   A+++F  + 
Sbjct: 266 MVVVLSACGHTRSGELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIE 325

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            KDV+SW ++I G +     EE LAL++ M+ + VKPN+VTF+G+++AC+ +G +  G+ 
Sbjct: 326 EKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACACLGALDLGKW 385

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           +   + ++   + +   +T L+D+ ++ G ++ AE + ++M    +  +W A+LS    H
Sbjct: 386 VHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSM-HSRNLASWNAMLSGFAMH 444

Query: 421 RNTEMGTRVANHLLS---LKPEDPSSYILLS 448
            + E    + + +++    +P+D +   +LS
Sbjct: 445 GHAERALALFSEMVNKGLFRPDDITFVGVLS 475


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 223/589 (37%), Positives = 340/589 (57%), Gaps = 37/589 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA I          L N +++ Y KC  ++ A  L ++MP +D VSW  +++ Y+Q+
Sbjct: 125 RAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQS 184

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV- 141
               + +++F  ML L   QP+ F  +SL+KA G+  +   G+Q+HA F L    D +V 
Sbjct: 185 GQASEALALFPKMLHLG-FQPNEFTLSSLLKASGTGPSDHHGRQLHA-FSLKYGYDMNVH 242

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V SSL+DMYA+                     W  M          ++A  IF     +N
Sbjct: 243 VGSSLLDMYAR---------------------WAHM----------REAKVIFNSLAAKN 271

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           +  W AL++G  +          F +M R+G +       SS++ ACA+   LE GK +H
Sbjct: 272 VVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTH-FTYSSVL-ACASSGSLEQGKWVH 329

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             VI  G +   +I N ++DMYAK   I  AK +F R+ ++D+VSW SII G AQHG   
Sbjct: 330 AHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGA 389

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L L+++M+ A V+PNE+TF+ ++ ACSH GL+ +G+  F+ +++ + I   + H+  +
Sbjct: 390 EALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDEGQYYFE-LMKKHKIEAQVAHHVTV 448

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL R+G L+EA   I+ MP +P    W ALL AC+ H+N ++G   A  +  L P D 
Sbjct: 449 VDLLGRAGRLNEANKFIEEMPIKPTAAVWGALLGACRMHKNMDLGVYAAEQIFELDPHDS 508

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
             ++LLSN+YASA      +KVRK+M    VKKEP  S++E     H+F A + SHP+++
Sbjct: 509 GPHVLLSNIYASAGRLSDAAKVRKMMKESGVKKEPACSWVEIENEVHVFVANDDSHPMRE 568

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           EI  +  ++  ++K  GYVPDTS VL  M Q+++E +L +HSE+LA+A+ +LK+ PG  +
Sbjct: 569 EIQRMWEKISGKIKEIGYVPDTSHVLFFMNQQDRELKLQYHSEKLALAFAVLKTPPGLTI 628

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+ KN+R+CGDCH   K  SR+  REI+VRD  R+HHF  G CSC D+W
Sbjct: 629 RIKKNIRICGDCHSAFKFASRVLGREIIVRDTNRFHHFLHGMCSCRDYW 677



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 174/352 (49%), Gaps = 36/352 (10%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           L+P+  +++ ++  C  L   + G+ +HA    S F DD V+ + +++MYAKCG    A+
Sbjct: 101 LEPERTLYSKMLNKCTYLRKLKQGRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQ 160

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            +FD +  K+ VSWT ++S Y++SG+  +A+ +F +                        
Sbjct: 161 DLFDKMPTKDMVSWTVLISGYSQSGQASEALALFPK------------------------ 196

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
                  M   G    +   LSS++ A         G+Q+H   +  GY+  + + ++++
Sbjct: 197 -------MLHLGFQ-PNEFTLSSLLKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLL 248

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           DMYA+ + +  AK IF  +  K+VVSW ++I G A+ G+ E  + L+ +M+  G +P   
Sbjct: 249 DMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHF 308

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           T+  ++ AC+  G + +G+ +   +I+  G  P       L+D+ ++SG + +A+ + + 
Sbjct: 309 TYSSVL-ACASSGSLEQGKWVHAHVIKSGG-QPIAYIGNTLIDMYAKSGSIKDAKKVFRR 366

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           +  + D  +W +++S    H       ++   +L  K + P+    LS + A
Sbjct: 367 L-VKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQ-PNEITFLSVLTA 416


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 215/589 (36%), Positives = 339/589 (57%), Gaps = 33/589 (5%)

Query: 22   VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
            V+ +H Q    G+ Q   + N L+  Y     +  A+ L + M  RD VSW+ ++  + +
Sbjct: 754  VRQVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAK 813

Query: 82   ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
                      F  ++     +PD++    +++AC  L   ++G+ +H          D  
Sbjct: 814  VGDYMNCFGTFRELIRCGA-RPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHF 872

Query: 142  VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
            V ++LVDMY KC      R +                         +DA  +F++   R+
Sbjct: 873  VCAALVDMYGKC------REI-------------------------EDARFLFDKMXERD 901

Query: 202  LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
            L  WT ++ G  +  N  ++   F +MR EGV + D + + ++V ACA    +   + I 
Sbjct: 902  LVTWTVMIGGYAECGNANESLVLFDKMREEGV-VPDKVAMVTVVFACAKLGAMHKARTID 960

Query: 262  GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
              +    ++  + +  A++DM+AKC  + +A++IF RM  K+V+SW+++I     HGQ  
Sbjct: 961  DYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGR 1020

Query: 322  ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
            + L L+  M+ +G+ PN++T V L+YACSH GLV +G + F  M EDY +   ++HYTC+
Sbjct: 1021 KALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSXMWEDYSVRXDVKHYTCV 1080

Query: 382  LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
            +DLL R+G LDEA  LI +M  E DE  W A L AC+ H++  +  + A  LL L+P++P
Sbjct: 1081 VDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACRTHKDVXLAEKAATSLLELQPQNP 1140

Query: 442  SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
              YILLSN+YA+A  W+ V+K+R LMS   +KK PG+++IE    SH F  G+T+HP   
Sbjct: 1141 GHYILLSNIYANAGRWEDVAKIRDLMSQRRLKKIPGWTWIEVDNKSHQFSVGDTTHPRSK 1200

Query: 502  EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            EI+E+L  L  +++  GYVPDT+ VLHD++++ K   L+ HSE+LA+A+GL+ +   T +
Sbjct: 1201 EIYEMLKSLGNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHTPI 1260

Query: 562  RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            R++KNLRVCGDCH   K++S IT R I+VRDA R+HHFK+G CSC D+W
Sbjct: 1261 RIIKNLRVCGDCHTFCKLVSAITGRVIIVRDANRFHHFKEGACSCGDYW 1309



 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 191/549 (34%), Positives = 310/549 (56%), Gaps = 37/549 (6%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           V+ +HAQ    G+ +   + N LI  Y     +  A+ L + M  RD VSW+ ++  + +
Sbjct: 78  VRQVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAK 137

Query: 82  ANLPQKTISIFSTMLALDKL--QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
                  I+ F T   L +   +PD++    +++AC  L   ++G+ +H          D
Sbjct: 138 VG---DYINCFGTFRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLD 194

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             V ++LVDMY KC      R +                         +DA  +F++   
Sbjct: 195 HFVCAALVDMYVKC------REI-------------------------EDARFLFDKMQE 223

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
           R+L  WT ++ G  +     ++   F +MR EGV + D + + ++V ACA    +   + 
Sbjct: 224 RDLVTWTVMIGGYAECGKANESLVLFEKMREEGV-VPDKVAMVTVVFACAKLGAMHKARI 282

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           I   +    ++  + +  A++DMYAKC  + +A++IF RM  K+V+SW+++I     HGQ
Sbjct: 283 IDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ 342

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
             + L L+  M+S+G+ P+++T   L+YACSH GLV +G + F SM EDY +   ++HYT
Sbjct: 343 GRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEGLRFFSSMWEDYSVRTDVKHYT 402

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++DLL R+G LDEA  LIK+M  E DE  W A L AC+ H++  +  + A  LL L+ +
Sbjct: 403 CVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQSQ 462

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           +P  Y+LLSN+YA+A  W+ V+K+R LMS   +KK PG+++IE    SH F  G+T+HP 
Sbjct: 463 NPGHYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQFSVGDTTHPR 522

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
             EI+E+L  L  +++  GYVPDT+ VLHD++++ K   L+ HSE+LA+A+GL+ +   T
Sbjct: 523 SKEIYEMLKSLSNKLELVGYVPDTNFVLHDVDEELKIGILYTHSEKLAIAFGLIATPEHT 582

Query: 560 VLRVVKNLR 568
            +R++KNLR
Sbjct: 583 PIRIIKNLR 591



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 53/185 (28%), Positives = 99/185 (53%), Gaps = 1/185 (0%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            +R C   +     + +H  + K GL     +   L+D YGKC  ++ A  L ++M +RD 
Sbjct: 843  IRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDL 902

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            V+W  ++  Y +     +++ +F  M   + + PD     ++V AC  LGA    + +  
Sbjct: 903  VTWTVMIGGYAECGNANESLVLFDKMRE-EGVVPDKVAMVTVVFACAKLGAMHKARTIDD 961

Query: 130  CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                  F  D ++ ++++DM+AKCG   +AR +FD ++ KN +SW+AM++AY   G+ + 
Sbjct: 962  YIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRK 1021

Query: 190  AMEIF 194
            A+++F
Sbjct: 1022 ALDLF 1026



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/414 (22%), Positives = 171/414 (41%), Gaps = 70/414 (16%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +R C   +     + +H  + K GL     +   L+D Y KC  ++ A  L ++M +RD 
Sbjct: 167 IRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDL 226

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W  ++  Y +     +++ +F  M   + + PD     ++V AC  LGA    + +  
Sbjct: 227 VTWTVMIGGYAECGKANESLVLFEKMRE-EGVVPDKVAMVTVVFACAKLGAMHKARIIDD 285

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 F  D ++ ++++DMYAKCG   +AR +FD ++ KN +SW+AM++AY   G+ + 
Sbjct: 286 YIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRK 345

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+++F             L SG++                       D + L+S++ AC+
Sbjct: 346 ALDLFPM----------MLSSGMLP----------------------DKITLASLLYACS 373

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +  ++E G +              F S+   D                   R DV  +T 
Sbjct: 374 HAGLVEEGLR--------------FFSSMWEDYSV----------------RTDVKHYTC 403

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           ++    + G+ +E L L   M    ++ +E  +   + AC     V    K   S++E  
Sbjct: 404 VVDLLGRAGRLDEALKLIKSMT---IEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQ 460

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE--PDEPTWAALLSACKHHR 421
              P   HY  L ++ + +G  ++   +   M        P W  +    K H+
Sbjct: 461 SQNPG--HYVLLSNIYANAGRWEDVAKIRDLMSQRRLKKTPGWTWIEVDNKSHQ 512


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 224/634 (35%), Positives = 348/634 (54%), Gaps = 66/634 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLH--------------QYGPLPNT------------ 43
           L+ CA+       + LH Q++K G                Q G L +             
Sbjct: 110 LKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDV 169

Query: 44  -----LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                LI  Y     ++ AH + +E+P +D VSW + ++ Y +    ++ + +F  M+  
Sbjct: 170 VSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKT 229

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           + ++PD     +++ AC   G+  LG+QVH+      F  +  + ++L+D+Y+KCG    
Sbjct: 230 N-VRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELET 288

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A  +F  +  K+ +SW  ++  Y      K+A+ +F+                       
Sbjct: 289 ACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQ----------------------- 325

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL--GYESCLFIS 276
                   +M R G    D  +LS I+ ACA+   +++G+ IH  +     G  +   + 
Sbjct: 326 --------DMLRSGEKPNDVTMLS-ILSACAHLGAIDIGRWIHVYIDKRLKGVTNASSLR 376

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
            +++DMYAKC DI AA+ +F  M  + + SW ++I G A HG+A     ++  M   G++
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIE 436

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
           P+++TFVGL+ ACSH G++  GR +F+SM  DY + P L+HY C++DL   SG   EAE 
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKLMPKLEHYGCMIDLXGHSGLFKEAEK 496

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           +I  M  EPD   W +LL ACK H N E+G   A +L+ ++PE+P SY+LLSN+YA+A  
Sbjct: 497 MINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPENPGSYVLLSNIYATAER 556

Query: 457 WQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKR 516
           W  V+K R L++   +KK PG S IE     H F  G+  HP   EI+ +L E++  ++ 
Sbjct: 557 WNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEE 616

Query: 517 RGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIV 576
            G+VPDTS VL +ME++ KE  L  HSE+LA+A+GL+ + PGT L +VKNLRVC +CH  
Sbjct: 617 AGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEA 676

Query: 577 MKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            K+IS+I KREI+ RD TR+HHF+DG+CSCND+W
Sbjct: 677 TKLISKIYKREIIARDRTRFHHFRDGECSCNDYW 710



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 118/447 (26%), Positives = 227/447 (50%), Gaps = 40/447 (8%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDA---YGKCDLVQYAHHLLEEMPQRDHVSWASILT 77
           +++ +HAQ+IK GLH      + L++        D + YA  + + + +   + W ++  
Sbjct: 17  SLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTMFR 76

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
            +  ++ P   + ++  M++L  L P+ + F  L+K+C    A + G+Q+H   +   F 
Sbjct: 77  GHALSSDPVSALKLYVCMVSLG-LLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFD 135

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D  + +SL+ MY + G   +A+ V D    ++ VS+TA+++ YA  G  + A ++F++ 
Sbjct: 136 LDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEI 195

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           PV+++  W A +SG  ++ N  +A   F +M +  V   D   + +++ ACA    +ELG
Sbjct: 196 PVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVR-PDESTMVTVLSACAQSGSIELG 254

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           +Q+H  +   G+   L I NA++D+Y+KC ++  A  +F  +  KDV+SW ++I G    
Sbjct: 255 RQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHM 314

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY-GITPSLQ 376
              +E L L+ +M+ +G KPN+VT + ++ AC+H+G +  GR +   + +   G+T +  
Sbjct: 315 NLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASS 374

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAM----------------------------------P 402
             T L+D+ ++ G ++ A+ +  +M                                   
Sbjct: 375 LRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNG 434

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRV 429
            EPD+ T+  LLSAC H    ++G  +
Sbjct: 435 IEPDDITFVGLLSACSHSGMLDLGRHI 461


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/598 (35%), Positives = 339/598 (56%), Gaps = 20/598 (3%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKC---------DLVQYAHHLLEEMPQRDHVSW 72
           +K +HA +I+          +T+ D +            +L+ YA  +  ++   +   +
Sbjct: 31  LKIIHAHLIR---------AHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFIY 81

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            S +  ++ +  P K+   F      + L PD+  +  LVKAC   G+  +G Q H   +
Sbjct: 82  NSFIRGFSGSKDPDKSFH-FYVQSKRNGLVPDNLTYPFLVKACTQKGSLDMGIQAHGQII 140

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
              F  D  V++SLV MY+  G   +A  VF  I   + VSWT+M++ Y +SG    A +
Sbjct: 141 RHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDVTSARK 200

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F++ P +NL  W+ ++SG  ++     A   +  ++ EGV   +  V+ S++ +CA+  
Sbjct: 201 LFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVH-ANETVMVSVIASCAHLG 259

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
            LELG++ H  ++       L +  A+VDMYA+C  I  A  +F ++  +D +SWT++I 
Sbjct: 260 ALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWTTLIA 319

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G A HG AE+ L  +  M  AG+ P E+TF  ++ ACSH GLV +G +LF+SM  DY I 
Sbjct: 320 GFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRDYRIE 379

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
           P L+HY C++DLL R+G L EAE  +  MP +P+ P W ALL AC+ H+N+E+  R    
Sbjct: 380 PRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAERAGKT 439

Query: 433 LLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYA 492
           L+ LKPE    Y+LLSN+YA    W++V  +R++M    V K PGY+  E     H F  
Sbjct: 440 LIELKPEHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPGYTLFEMDGKVHKFTI 499

Query: 493 GETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGL 552
           G+ +HP   +I  +  E+  +++  GY  +    L D++++EKE  +  HSE+LA+AY +
Sbjct: 500 GDKTHPEIQQIERMWEEILGKIRLAGYTGNNDDALFDIDEEEKESNIHRHSEKLAIAYAI 559

Query: 553 LKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +++     +R+VKNLRVC DCH   K+IS++ +RE++VRD  R+HHFK G CSC D+W
Sbjct: 560 MRTKGHDPIRIVKNLRVCEDCHTATKLISKVYERELIVRDRNRFHHFKGGACSCMDYW 617


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 222/609 (36%), Positives = 350/609 (57%), Gaps = 40/609 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ C+      + K  H Q    G      + + LI  Y  C  ++ A  + +E+P+R+ 
Sbjct: 83  IKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNI 142

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVF------ASLVKACGSLGATRL 123
           VSW S++  Y+        +S+F  +L +D+   D  +F       S++ AC  + A  L
Sbjct: 143 VSWTSMIRGYDLNGNALDAVSLFKDLL-VDENDDDDAMFLDSMGLVSVISACSRVPAKGL 201

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN--NARAVFDSIKLKNSVSWTAMLSAY 181
            + +H+  +   F     V ++L+D YAK G      AR +FD I  K+ VS+ +++S Y
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVY 261

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
           A+SG   +A E+F +           LV      +N++  F              + + L
Sbjct: 262 AQSGMSNEAFEVFRR-----------LV------KNKVVTF--------------NAITL 290

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           S+++ A ++   L +GK IH  VI +G E  + +  +I+DMY KC  +  A+  F RM+ 
Sbjct: 291 STVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKN 350

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           K+V SWT++I G   HG A + L L+  M+ +GV+PN +TFV ++ ACSH GL  +G + 
Sbjct: 351 KNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRW 410

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F +M   +G+ P L+HY C++DLL R+G L +A +LI+ M  +PD   W++LL+AC+ H+
Sbjct: 411 FNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHK 470

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           N E+       L  L   +   Y+LLS++YA A  W+ V +VR +M    + K PG+S +
Sbjct: 471 NVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFSLL 530

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E     H+F  G+  HP +++I+E L EL+ ++   GYV +TSSV HD++++EKE  L  
Sbjct: 531 ELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRV 590

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSE+LA+A+G++ +VPG+ + VVKNLRVC DCH V+K+IS+I  RE VVRDA R+HHFKD
Sbjct: 591 HSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKD 650

Query: 602 GKCSCNDFW 610
           G CSC D+W
Sbjct: 651 GGCSCGDYW 659



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/360 (26%), Positives = 166/360 (46%), Gaps = 32/360 (8%)

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           + + D  SW S++    ++    + +  FS+M  L  L P    F   +KAC SL     
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKL-SLYPTRSSFPCAIKACSSLFDIFS 94

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           GKQ H    +  +  D  V S+L+ MY+ CG   +AR VFD I  +N VSWT+M+  Y  
Sbjct: 95  GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDL 154

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           +G   DA+ +F+                LV   ++ DA +            +D + L S
Sbjct: 155 NGNALDAVSLFKDL--------------LVDENDDDDAMF------------LDSMGLVS 188

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD--IIAAKDIFGRMRR 301
           ++ AC+      L + IH  VI  G++  + + N ++D YAK  +  +  A+ IF ++  
Sbjct: 189 VISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD 248

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRK 360
           KD VS+ SI+   AQ G + E   ++  +V   V   N +T   ++ A SH G +  G+ 
Sbjct: 249 KDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKC 308

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           +   +I   G+   +   T ++D+  + G ++ A      M    +  +W A+++    H
Sbjct: 309 IHDQVIR-MGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMK-NKNVRSWTAMIAGYGMH 366



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 68/155 (43%), Gaps = 3/155 (1%)

Query: 295 IFGR-MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
           +F R + + DV SW S+I   A+ G + E L  +  M    + P   +F   I ACS + 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
            +  G++  +     +G    +   + L+ + S  G L++A  +   +P + +  +W ++
Sbjct: 91  DIFSGKQTHQQAFV-FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRNIVSWTSM 148

Query: 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
           +     + N      +   LL  + +D  +  L S
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDS 183


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/601 (37%), Positives = 333/601 (55%), Gaps = 46/601 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C         + +H Q++K G      + + LID Y K   + +A  +   + + D 
Sbjct: 445 LKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDV 504

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++  Y Q +   + +++F  M     ++ D+  FAS + AC  + A   G+Q+HA
Sbjct: 505 VSWTAMIAGYTQHDKFTEALNLFKEMQD-QGIKSDNIGFASAISACAGIQALDQGRQIHA 563

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
              LS + DD  + ++LV                               S YAR G+ ++
Sbjct: 564 QSCLSGYSDDLSIGNALV-------------------------------SLYARCGKVRE 592

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A   F+Q   ++   W +LVSG  QS    +A   F +M + G++I +     S V A A
Sbjct: 593 AYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEI-NSFTFGSAVSAAA 651

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           N A + +GKQIHG++   GY+S   +SNA++ +YAKC  I             D +SW S
Sbjct: 652 NIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTI-------------DDISWNS 698

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G +QHG   E L L+++M    V PN VTFVG++ ACSHVGLV +G   F+SM E +
Sbjct: 699 MITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMSEAH 758

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            + P  +HY C++DLL RSG L  A+  ++ MP +PD   W  LLSAC  H+N ++G   
Sbjct: 759 NLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIGEFA 818

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A+HLL L+P+D ++Y+L+SN+YA +  W    + R++M    VKKEPG S++E     H 
Sbjct: 819 ASHLLELEPKDSATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDNSVHA 878

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F+AG+ +HP  D I+E L  LD      GYVP  +S+L D E ++K+     HSERLA+A
Sbjct: 879 FFAGDQNHPRADMIYEYLRGLDFRAAENGYVPRCNSLLSDAEIRQKDPTEIIHSERLAIA 938

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GLL     T L V KNLRVC DCH  +K +S+IT R I+VRD+ R+HHFK G CSC D+
Sbjct: 939 FGLLSLTSSTPLYVFKNLRVCEDCHNWIKHVSKITDRVIIVRDSYRFHHFKVGSCSCKDY 998

Query: 610 W 610
           W
Sbjct: 999 W 999



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/408 (27%), Positives = 189/408 (46%), Gaps = 52/408 (12%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C + +     K LH  ++K G      + N L+  Y +   +  A  +   M QRD 
Sbjct: 258 LSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDR 317

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS+ S+++   Q     + +++F  M  LD  +PD    ASL+ AC S+GA   GKQ H+
Sbjct: 318 VSYNSLISGLAQQGYINRALALFKKM-NLDCQKPDCVTVASLLSACASVGALPNGKQFHS 376

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +    D VV+ SL+D+Y KC                                  K 
Sbjct: 377 YAIKAGMTSDIVVEGSLLDLYVKCS-------------------------------DIKT 405

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A E F             L  G + + N+  +F  F +M+ EG+ + +     SI+  C 
Sbjct: 406 AHEFF-------------LCYGQLDNLNK--SFQIFTQMQIEGI-VPNQFTYPSILKTCT 449

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
                +LG+QIH  V+  G++  +++S+ ++DMYAK   +  A  IF R++  DVVSWT+
Sbjct: 450 TLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTA 509

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF-KSMIED 368
           +I G  QH +  E L L+ EM   G+K + + F   I AC+ +  + +GR++  +S +  
Sbjct: 510 MIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSG 569

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           Y    S+ +   L+ L +R G + EA      + +  D  +W +L+S 
Sbjct: 570 YSDDLSIGN--ALVSLYARCGKVREAYAAFDQI-YAKDNVSWNSLVSG 614



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/449 (25%), Positives = 199/449 (44%), Gaps = 76/449 (16%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           LID Y     +  A ++ +EMP R    W  I   +    L  +   +F  ML    ++ 
Sbjct: 103 LIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLT-KNVEF 161

Query: 104 DHFVFASLVKAC-GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162
           D  +FA +++ C G+  + R  +Q+HA  + S F     + + L+D+Y K G  ++A+  
Sbjct: 162 DERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAK-- 219

Query: 163 FDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
                                        ++FE    R+   W A++SGL Q+  E +A 
Sbjct: 220 -----------------------------KVFENLKARDSVSWVAMISGLSQNGYEEEAM 250

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
             F ++               ++ AC      E GKQ+HGLV+  G+ S  ++ NA+V +
Sbjct: 251 LLFCQI---------------VLSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTL 295

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           Y++  ++ +A+ IF  M ++D VS+ S+I G AQ G     LAL+ +M     KP+ VT 
Sbjct: 296 YSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTV 355

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA-------- 394
             L+ AC+ VG +  G++ F S     G+T  +     LLDL  +   +  A        
Sbjct: 356 ASLLSACASVGALPNGKQ-FHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTAHEFFLCYG 414

Query: 395 --ENLIKA------MPFE---PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
             +NL K+      M  E   P++ T+ ++L  C     T++G ++   +L    +    
Sbjct: 415 QLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQ---- 470

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEV 472
                NVY S+ +    +K  KL   +++
Sbjct: 471 ----FNVYVSSVLIDMYAKHGKLDHALKI 495



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 123/260 (47%), Gaps = 27/260 (10%)

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
           N+R+ +D +KL         +  Y   G    A+ +F++ P+R+L  W  + +  +  R 
Sbjct: 93  NSRSFYDGLKL---------IDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERL 143

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV-LELGKQIHGLVIALGYESCLFIS 276
                  F  M  + V+  D  + + ++  C+  AV     +QIH   I  G+ES  FI 
Sbjct: 144 MGRVPGLFRRMLTKNVEF-DERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFIC 202

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
           N ++D+Y K   + +AK +F  ++ +D VSW ++I G +Q+G  EE + L+ ++V     
Sbjct: 203 NPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIV----- 257

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
                    + AC+ V     G++L   ++   G +        L+ L SRSG+L  AE 
Sbjct: 258 ---------LSACTKVEFFEFGKQL-HGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQ 307

Query: 397 LIKAMPFEPDEPTWAALLSA 416
           +   M  + D  ++ +L+S 
Sbjct: 308 IFHCMS-QRDRVSYNSLISG 326


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/543 (38%), Positives = 327/543 (60%), Gaps = 4/543 (0%)

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW  +++ +N++      + +F  M  L+ L+PD    +S++ A G L    +G Q+H 
Sbjct: 176 VSWNGMISGFNRSGSYLDAVLMFQNM-HLEGLKPDGTSVSSVLPAVGDLDMPLMGIQIHC 234

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +      D  V S+L+DMY KC   +    VF+ +   +  +  A+++  +R+G   +
Sbjct: 235 YVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDN 294

Query: 190 AMEIFEQAPVR--NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
           A+E+F+Q      N+  WT++++   Q+  +++A   F EM+ EGV   + + +  ++ A
Sbjct: 295 ALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQIEGVK-PNSVTIPCLLPA 353

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
           C N A L  GK  H   +  G  + +++ +A++DMYAKC  ++A++  F  M  +++VSW
Sbjct: 354 CGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNLVSW 413

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            S++ G A HG+  E + +++ M   G KP+ V+F  ++ AC+  GL  +G   F SM  
Sbjct: 414 NSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQGGLTEEGWFYFDSMSR 473

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
           ++G+   ++HY+C++ LL RSG L+EA  +IK MPFEPD   W ALLS+C+ H   ++G 
Sbjct: 474 NHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWGALLSSCRVHNRVDLGE 533

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
             A  +  L+P +P +YILLSN+YAS AMW  V  VR +M    +KK PGYS+IE     
Sbjct: 534 IAAKRVFELEPRNPGNYILLSNIYASKAMWVEVDMVRDMMRSRGLKKNPGYSWIEIKNKV 593

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
           H+  AG++SHP   +I E L +L  EMK+ GYVP T  VL D+E+++KE+ L  HSE+LA
Sbjct: 594 HMLLAGDSSHPQMPQIIEKLAKLTVEMKKSGYVPHTDFVLQDVEEQDKEQILCGHSEKLA 653

Query: 548 VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
           V  GLL + PG  L+V+KNLR+C DCH V+K IS   KREI VRD  R+H FK G CSC 
Sbjct: 654 VVLGLLNTKPGFPLQVIKNLRICRDCHAVIKFISDFEKREIFVRDTNRFHQFKGGVCSCG 713

Query: 608 DFW 610
           D+W
Sbjct: 714 DYW 716



 Score =  151 bits (382), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 188/411 (45%), Gaps = 46/411 (11%)

Query: 50  KCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFA 109
           K  L Q   H+L     +  +S    +  +++ N     I +FS ML    + PD  V  
Sbjct: 25  KASLSQAHAHIL-----KTGISLPETIQIFSKLNHFGHVIRVFSYMLT-QGIVPDSRVLP 78

Query: 110 SLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           +++K C +L A + GKQ+H   ++S    D VV SSL+ MY +     +AR VFD +   
Sbjct: 79  TVIKTCAALSALQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQP 138

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQ----APVRNLFLWTALVSGLVQSRNEIDAFYSF 225
             V+ +A++S +AR GR K+  E+F Q        NL  W  ++SG  +S + +DA   F
Sbjct: 139 GVVTSSALISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMF 198

Query: 226 IEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK 285
             M  EG+   D   +SS++ A  +  +  +G QIH  VI  G     F+ +A++DMY K
Sbjct: 199 QNMHLEGLK-PDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGK 257

Query: 286 CSDIIAAKDIFGRMRRKD---------------------------------VVSWTSIIV 312
           C+       +F  M   D                                 VVSWTS+I 
Sbjct: 258 CACASEMSGVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIA 317

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
             +Q+G+  E L L+ EM   GVKPN VT   L+ AC ++  +  G+      + + GI 
Sbjct: 318 SCSQNGKDMEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRN-GIF 376

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
             +   + L+D+ ++ G +  +      MP   +  +W +L++    H  T
Sbjct: 377 NDVYVGSALIDMYAKCGRMLASRLCFDMMP-NRNLVSWNSLMAGYAMHGKT 426



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 108/247 (43%), Gaps = 44/247 (17%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD---------------- 68
           +H  +IK GL     + + LID YGKC        +  EM + D                
Sbjct: 232 IHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVGACNALVTGLSRNGL 291

Query: 69  -----------------HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
                             VSW S++ + +Q     + + +F  M  ++ ++P+      L
Sbjct: 292 VDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREM-QIEGVKPNSVTIPCL 350

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKN 170
           + ACG++ A   GK  H CF L     +DV V S+L+DMYAKCG    +R  FD +  +N
Sbjct: 351 LPACGNIAALLHGKAAH-CFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRN 409

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFE------QAPVRNLFLWTALVSGLVQSRNEIDAFYS 224
            VSW ++++ YA  G+  +A+ IFE      Q P    F  T ++S   Q     + ++ 
Sbjct: 410 LVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSF--TCVLSACTQGGLTEEGWFY 467

Query: 225 FIEMRRE 231
           F  M R 
Sbjct: 468 FDSMSRN 474



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 83/217 (38%), Gaps = 43/217 (19%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C      L  K  H   ++ G+     + + LID Y KC  +  +    + MP R+ 
Sbjct: 351 LPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLASRLCFDMMPNRNL 410

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S++  Y       + I+IF  M    + +PDH  F  ++ AC              
Sbjct: 411 VSWNSLMAGYAMHGKTFEAINIFELMQRCGQ-KPDHVSFTCVLSAC-------------- 455

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-----WTAMLSAYARS 184
                                 + GL       FDS+   + V      ++ M++   RS
Sbjct: 456 ---------------------TQGGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRS 494

Query: 185 GRKKDAMEIFEQAPVR-NLFLWTALVSGLVQSRNEID 220
           GR ++A  + +Q P   +  +W AL+S   +  N +D
Sbjct: 495 GRLEEAYAMIKQMPFEPDSCVWGALLSS-CRVHNRVD 530


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/609 (35%), Positives = 351/609 (57%), Gaps = 11/609 (1%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPN--TLIDAYGKCDLVQYAHHLL 61
           ++YLH  R+ +  +    +  +HAQII  G   +  + +   L   + KCDL   A  + 
Sbjct: 50  TNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSITHLINLYSLFHKCDL---ARSVF 106

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
           +  P    + W S++ AY ++    + + ++  M+    L+ D F+ A LV     +G  
Sbjct: 107 DSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGGLERDVFIGAGLVDMYSKMGDL 166

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
           +  ++V   F   P   D V  ++++   ++   P  AR VFD +  ++ VSW  M++ Y
Sbjct: 167 KRAREV---FDKMP-KRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGY 222

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
           A +G   + +E+F++  + N+  W  +++  +Q+ +  +A  SF +MR E     + +  
Sbjct: 223 AHNGCFVEVLELFDKMKLGNV-TWNVIIAAYMQNGHAKEAISSFHQMRLENFH-PNSVTF 280

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
            S++ A A  A    G   H  +I +G+ S   + N+++DMYAKC  +  ++ +F  M  
Sbjct: 281 VSVLPAAAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDH 340

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           KD VSW +++ G A HG  +  +AL+  M  + V+ + V+FV ++ AC H GLV +GRK+
Sbjct: 341 KDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKI 400

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F SM + Y I P L+HY C++DLL R+G  DE    IK MP EPD   W ALL +C+ H 
Sbjct: 401 FHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHS 460

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           N ++G    +HL+ L+P +P+ +++LS++YA +  W    K R  M+ + +KK PG S++
Sbjct: 461 NVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWV 520

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E     H F  G+ SHP  + +  L   L  +M++ GYVPD S VL ++E+++KE  L+ 
Sbjct: 521 ELKNKVHAFRVGDKSHPQLESMHLLWNTLLEKMEKIGYVPDRSCVLQNVEEEDKEMFLYS 580

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSERLA+ + LL + PG+ +++VKNLRVC DCH   K IS+IT R I+VRDATR+HHF+D
Sbjct: 581 HSERLAITFALLNTPPGSTIQIVKNLRVCADCHTTTKFISKITTRRIIVRDATRFHHFED 640

Query: 602 GKCSCNDFW 610
           G CSCND+W
Sbjct: 641 GICSCNDYW 649


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/601 (35%), Positives = 343/601 (57%), Gaps = 32/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C+   +    + +HA I   G      L N L+  Y +C  +  A  + + +P+RD 
Sbjct: 228 LSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDV 287

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW++++ A+ + +L  + I  +S M  L+ ++P+++ FAS++ AC S+G  R G+ VH 
Sbjct: 288 VSWSAMIAAFAETDLFDEAIEFYSKM-QLEGVRPNYYTFASVLLACASVGDLRAGRAVHD 346

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + + +    V  ++LVD+Y   G  + AR+                            
Sbjct: 347 QILGNGYKITLVNGTALVDLYTSYGSLDEARS---------------------------- 378

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
              +F+Q   R+  LWT L+ G  +  +       + EM+         ++ S ++ ACA
Sbjct: 379 ---LFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACA 435

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +       +Q H  + A G  S   ++ ++V+MY++  ++ +A+ +F +M  +D ++WT+
Sbjct: 436 SLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTT 495

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G A+HG+    L LY EM   G +P+E+TF+ ++YACSH GL  +G++LF S+  DY
Sbjct: 496 LIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDY 555

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            + P++ HY+C++DLLSR+G L +AE LI AMP EP++ TW++LL A + H++ +  T  
Sbjct: 556 AMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHA 615

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  +  L P DP+SY+LLSNV+A       ++ VR  M    VKK  G S+IE     H 
Sbjct: 616 AGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHE 675

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F  G+ SHP   EIF  L  L  ++K  GYVP++  VLHD+ +KEKE  L  HSE+LA+A
Sbjct: 676 FNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIA 735

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GL+ + PGT LR+   LR+C DCH  +K IS I +REI+VRD++R+H F+DG+CSC D+
Sbjct: 736 FGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDY 795

Query: 610 W 610
           W
Sbjct: 796 W 796



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 128/416 (30%), Positives = 214/416 (51%), Gaps = 51/416 (12%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           HY   LR C   Q   +V+ +H +I          L N ++ AYGKC  V  A    + +
Sbjct: 29  HYRDALRQC---QDLESVRQIHDRISGAASANV-FLGNEIVRAYGKCGSVASARVAFDAI 84

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
            +++  SW S+LTAY Q    +  + ++  M     LQP+  V+ +++ AC S+ A   G
Sbjct: 85  ARKNDYSWGSMLTAYAQNGHYRAALDLYKRM----DLQPNPVVYTTVLGACASIEALEEG 140

Query: 125 KQVHACFVLSPFCDDDVV-KSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYA 182
           K +H+    +     DV+ ++SL+ MYAKCG   +A+ +F+ +  + SVS W AM++AYA
Sbjct: 141 KAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYA 200

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV-- 240
           +SG  ++A+ ++E                      ++D               V+P V  
Sbjct: 201 QSGHFEEAIRLYE----------------------DMD---------------VEPSVRT 223

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
            +S++ AC+N  +L+ G++IH L+ + G E  L + NA++ MYA+C  +  A  IF R+ 
Sbjct: 224 FTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLP 283

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
           R+DVVSW+++I   A+    +E +  Y +M   GV+PN  TF  ++ AC+ VG +  GR 
Sbjct: 284 RRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRA 343

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +   ++ + G   +L + T L+DL +  G LDEA +L   +    DE  W  L+  
Sbjct: 344 VHDQILGN-GYKITLVNGTALVDLYTSYGSLDEARSLFDQIE-NRDEGLWTVLIGG 397



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 116/452 (25%), Positives = 205/452 (45%), Gaps = 46/452 (10%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKL-GLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           Y   L  CA  +     K +H++I    GL     L N+L+  Y KC  ++ A  L E M
Sbjct: 124 YTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERM 183

Query: 65  PQRDHVS-WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
             R  VS W +++ AY Q+   ++ I ++  M     ++P    F S++ AC +LG    
Sbjct: 184 SGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM----DVEPSVRTFTSVLSACSNLGLLDQ 239

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G+++HA                            ++R     + L+N     A+L+ YAR
Sbjct: 240 GRKIHALI--------------------------SSRGTELDLSLQN-----ALLTMYAR 268

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR--NEIDAFYSFIEMRREGVDIVDPLVL 241
                DA +IF++ P R++  W+A+++   ++   +E   FYS  +M+ EGV   +    
Sbjct: 269 CKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYS--KMQLEGVR-PNYYTF 325

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           +S++ ACA+   L  G+ +H  ++  GY+  L    A+VD+Y     +  A+ +F ++  
Sbjct: 326 ASVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIEN 385

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRK 360
           +D   WT +I G ++ G     L LY EM +    P  ++ +  +I AC+ +G     R+
Sbjct: 386 RDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQ 445

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
              S IE  G+       T L+++ SR G+L+ A  +   M    D   W  L++    H
Sbjct: 446 A-HSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMS-SRDTLAWTTLIAGYAKH 503

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
               +   +    + L+  +PS    +  +YA
Sbjct: 504 GEHGLALGLYKE-MELEGAEPSELTFMVVLYA 534



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 86/176 (48%), Gaps = 4/176 (2%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           LE  +QIH   I+    + +F+ N IV  Y KC  + +A+  F  + RK+  SW S++  
Sbjct: 40  LESVRQIHDR-ISGAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTA 98

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
            AQ+G     L LY  M    ++PN V +  ++ AC+ +  + +G+ +   +    G+  
Sbjct: 99  YAQNGHYRAALDLYKRM---DLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKL 155

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            +     LL + ++ G L++A+ L + M       +W A+++A     + E   R+
Sbjct: 156 DVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRL 211


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/588 (37%), Positives = 335/588 (56%), Gaps = 35/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +++H    + G      + N L+D Y KC   + A  + + M  +  VSW +++    Q 
Sbjct: 266 RSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQN 325

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++  + F  ML   ++ P       ++ AC +LG    G  VH          +  V
Sbjct: 326 GESEEAFATFLKMLDEGEV-PTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSV 384

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SL+ MY+KC   + A ++F++++ K +V+W AM+  YA++G  K+A+ +         
Sbjct: 385 MNSLISMYSKCKRVDIAASIFNNLE-KTNVTWNAMILGYAQNGCVKEALNL--------- 434

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                 F  M+ +G+ + D   L  ++ A A+F+V    K IHG
Sbjct: 435 ----------------------FCMMQSQGIKL-DCFTLVGVITALADFSVNRQAKWIHG 471

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L +    ++ +F+S A+VDMYAKC  I  A+ +F  M+ + V++W ++I G   HG  +E
Sbjct: 472 LAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKE 531

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
           TL L++EM    VKPN++TF+ +I ACSH G V +G  LFKSM EDY + P++ HY+ ++
Sbjct: 532 TLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMV 591

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G LD+A N I+ MP +P      A+L ACK H+N E+G + A  L  L P++  
Sbjct: 592 DLLGRAGQLDDAWNFIQEMPIKPGISVLGAMLGACKIHKNVELGEKAAQKLFKLDPDEGG 651

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            ++LL+N+YAS +MW  V+KVR  M    + K PG S++E     H FY+G T+HP   +
Sbjct: 652 YHVLLANIYASNSMWDKVAKVRTAMEDKGLHKTPGCSWVELRNEIHTFYSGSTNHPESKK 711

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L  L  E+K  GYVPD  S+ HD+E+  K++ L  HSERLA+A+GLL + PGT L 
Sbjct: 712 IYAFLETLGDEIKAAGYVPDPDSI-HDVEEDVKKQLLSSHSERLAIAFGLLNTSPGTTLH 770

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + KNLRVCGDCH   K IS +T REI+VRD  R+HHFK+G CSC D+W
Sbjct: 771 IRKNLRVCGDCHDTTKYISLVTGREIIVRDLRRFHHFKNGSCSCGDYW 818



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 115/462 (24%), Positives = 199/462 (43%), Gaps = 77/462 (16%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
           +  Y   L++C  +      + +H  II  G      +   ++  Y KC  +  A+ + E
Sbjct: 145 VGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFE 204

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
            M  +D VSW +++  Y Q    ++ + +   M    + +PD     S++ A   + A R
Sbjct: 205 RMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQ-KPDSVTLVSILPAVADMKALR 263

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           +G+ +H     S F     V ++L+DMY KCG    AR VF  ++ K  VSW  M+   A
Sbjct: 264 IGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCA 323

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           ++G  +                               +AF +F++M  EG ++   + + 
Sbjct: 324 QNGESE-------------------------------EAFATFLKMLDEG-EVPTRVTMM 351

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            ++ ACAN   LE G  +H L+  L  +S + + N+++ MY+KC  +  A  IF  + + 
Sbjct: 352 GVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKT 411

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC------------- 349
           + V+W ++I+G AQ+G  +E L L+  M S G+K +  T VG+I A              
Sbjct: 412 N-VTWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIH 470

Query: 350 ----------------------SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
                                 +  G +   RKLF  M E + IT     +  ++D    
Sbjct: 471 GLAVRACMDNNVFVSTALVDMYAKCGAIKTARKLFDMMQERHVIT-----WNAMIDGYGT 525

Query: 388 SGHLDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMG 426
            G   E  +L   M     +P++ T+ +++SAC H    E G
Sbjct: 526 HGVGKETLDLFNEMQKGAVKPNDITFLSVISACSHSGFVEEG 567



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 186/386 (48%), Gaps = 36/386 (9%)

Query: 29  IIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKT 88
           IIK G +        +I  + K      A  + E +  +  V +  +L  Y + +     
Sbjct: 70  IIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDA 129

Query: 89  ISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVD 148
           +  F  M+  D+++     +A L++ CG     + G+++H   + + F      +S+L  
Sbjct: 130 LCFFLRMMC-DEVRLVVGDYACLLQLCGENLDLKKGREIHGLIITNGF------ESNLFV 182

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           M                         TA++S YA+  +  +A ++FE+   ++L  WT L
Sbjct: 183 M-------------------------TAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTL 217

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
           V+G  Q+ +   A    ++M+  G    D + L SI+ A A+   L +G+ IHG     G
Sbjct: 218 VAGYAQNGHAKRALQLVLQMQEAGQK-PDSVTLVSILPAVADMKALRIGRSIHGYAFRSG 276

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
           +ES + ++NA++DMY KC     A+ +F  MR K VVSW ++I G AQ+G++EE  A + 
Sbjct: 277 FESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFL 336

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
           +M+  G  P  VT +G++ AC+++G + +G  + K +++   +  ++     L+ + S+ 
Sbjct: 337 KMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHK-LLDKLKLDSNVSVMNSLISMYSKC 395

Query: 389 GHLDEAENLIKAMPFEPDEPTWAALL 414
             +D A ++   +  E    TW A++
Sbjct: 396 KRVDIAASIFNNL--EKTNVTWNAMI 419



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 132/255 (51%), Gaps = 13/255 (5%)

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
           T ++S + + G   +A  +FE   ++   L+  ++ G  ++ +  DA   F+ M  + V 
Sbjct: 83  TKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVR 142

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
           +V     + ++  C     L+ G++IHGL+I  G+ES LF+  A++ +YAKC  I  A  
Sbjct: 143 LVVG-DYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYK 201

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL 354
           +F RM+ KD+VSWT+++ G AQ+G A+  L L  +M  AG KP+ VT V ++ A + +  
Sbjct: 202 MFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKA 261

Query: 355 VGKGRKL----FKSMIEDYGITPSLQHYT-CLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
           +  GR +    F+S  E      SL + T  LLD+  + G    A  + K M       +
Sbjct: 262 LRIGRSIHGYAFRSGFE------SLVNVTNALLDMYFKCGSARIARLVFKGMR-SKTVVS 314

Query: 410 WAALLSACKHHRNTE 424
           W  ++  C  +  +E
Sbjct: 315 WNTMIDGCAQNGESE 329


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 217/601 (36%), Positives = 334/601 (55%), Gaps = 34/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C   ++    + +H  +I+        + NTL++ Y KC  ++ A  + ++MP+RD 
Sbjct: 58  LKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDF 117

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W ++++ Y+Q + P   + +F+ ML      P+ F  +S++KA  +      G Q+H 
Sbjct: 118 VTWTTLISGYSQHDRPFDALVLFNQMLRFG-FSPNEFTLSSVIKAAAAERRGCCGHQLHG 176

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 FC              KCG  +N                +A+L  Y R G   D
Sbjct: 177 ------FC-------------VKCGFDSNVHVG------------SALLDLYTRYGLMDD 205

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F+    RN   W AL++G  +      A   F  M REG         +S+ GAC+
Sbjct: 206 AQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFR-PSHFSYASLFGACS 264

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +   LE GK +H  +I  G +   F  N ++DMYAK   I  A+ IF R+ ++DVVSW S
Sbjct: 265 STGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNS 324

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           ++   AQHG   E +  ++EM   G++PNE++F+ ++ ACSH GL+ +G   ++ M +D 
Sbjct: 325 LLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD- 383

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI     HY  ++DLL R+G L+ A   I+ MP EP    W ALL+AC+ H+NTE+G   
Sbjct: 384 GIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYA 443

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A H+  L P+DP  +++L N+YAS   W   ++VRK M    VKKEP  S++E     H+
Sbjct: 444 AEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHM 503

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F A +  HP ++EI     E+ A++K  GYVPDTS V+  ++Q+E+E  L +HSE++A+A
Sbjct: 504 FVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALA 563

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + LL + PG+ + + KN+RVCGDCH  +K+ S+   REI+VRD  R+HHFKDG CSC D+
Sbjct: 564 FALLNTPPGSTIHIKKNIRVCGDCHSAIKLASKAVGREIIVRDTNRFHHFKDGACSCKDY 623

Query: 610 W 610
           W
Sbjct: 624 W 624



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 152/317 (47%), Gaps = 34/317 (10%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D   + +L+K C        G+ VH   + S F  D V+ ++L++MYAKCG    AR VF
Sbjct: 50  DRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVF 109

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           D +  ++ V+WT ++S Y++  R  DA+ +F Q                           
Sbjct: 110 DKMPERDFVTWTTLISGYSQHDRPFDALVLFNQ--------------------------- 142

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
               M R G    +   LSS++ A A       G Q+HG  +  G++S + + +A++D+Y
Sbjct: 143 ----MLRFGFS-PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLY 197

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
            +   +  A+ +F  +  ++ VSW ++I G A+    E+ L L+  M+  G +P+  ++ 
Sbjct: 198 TRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALELFQGMLREGFRPSHFSYA 257

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            L  ACS  G + +G+ +   MI+      +    T LLD+ ++SG + +A  +   +  
Sbjct: 258 SLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT-LLDMYAKSGSIHDARKIFDRLA- 315

Query: 404 EPDEPTWAALLSACKHH 420
           + D  +W +LL+A   H
Sbjct: 316 KRDVVSWNSLLTAYAQH 332



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/189 (29%), Positives = 101/189 (53%), Gaps = 2/189 (1%)

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
           VD    ++++  C  F +L  G+ +HG +I   +   L ++N +++MYAKC  +  A+ +
Sbjct: 49  VDRRFYNTLLKKCTVFKLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKV 108

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
           F +M  +D V+WT++I G +QH +  + L L+++M+  G  PNE T   +I A +     
Sbjct: 109 FDKMPERDFVTWTTLISGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRG 168

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
             G +L    ++  G   ++   + LLDL +R G +D+A+ +  A+    D  +W AL++
Sbjct: 169 CCGHQLHGFCVK-CGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRND-VSWNALIA 226

Query: 416 ACKHHRNTE 424
                  TE
Sbjct: 227 GHARRCGTE 235


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  427 bits (1098), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 214/601 (35%), Positives = 343/601 (57%), Gaps = 32/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C+   +    + +HA I   G      L N L+  Y +C  +  A  + + +P+RD 
Sbjct: 227 LSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDV 286

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW++++ A+ + +L  + I  +S M  L+ ++P+++ FAS++ AC S+G  R G+ VH 
Sbjct: 287 VSWSAMIAAFAETDLFDEAIEFYSKM-QLEGVRPNYYTFASVLLACASVGDLRAGRAVHD 345

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + + +    V  ++LVD+Y   G  + AR+                            
Sbjct: 346 QILGNGYKITLVNGTALVDLYTSYGSLDEARS---------------------------- 377

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
              +F+Q   R+  LWT L+ G  +  +       + EM+         ++ S ++ ACA
Sbjct: 378 ---LFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACA 434

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +       +Q H  + A G  S   ++ ++V+MY++  ++ +A+ +F +M  +D ++WT+
Sbjct: 435 SLGAFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTT 494

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G A+HG+    L LY EM   G +P+E+TF+ ++YACSH GL  +G++LF S+  DY
Sbjct: 495 LIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDY 554

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            + P++ HY+C++DLLSR+G L +AE LI AMP EP++ TW++LL A + H++ +  T  
Sbjct: 555 AMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHA 614

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  +  L P DP+SY+LLSNV+A       ++ VR  M    VKK  G S+IE     H 
Sbjct: 615 AGQITKLDPVDPASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWIEVADQIHE 674

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F  G+ SHP   EIF  L  L  ++K  GYVP++  VLHD+ +KEKE  L  HSE+LA+A
Sbjct: 675 FNVGDNSHPRFQEIFAELQRLSPKIKEAGYVPESEEVLHDVGEKEKELLLRLHSEKLAIA 734

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GL+ + PGT LR+   LR+C DCH  +K IS I +REI+VRD++R+H F+DG+CSC D+
Sbjct: 735 FGLIATAPGTTLRIFNTLRICHDCHSAVKFISAIARREIIVRDSSRFHKFRDGQCSCGDY 794

Query: 610 W 610
           W
Sbjct: 795 W 795



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 123/415 (29%), Positives = 205/415 (49%), Gaps = 50/415 (12%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           HY   LR C   Q   +V+ +H +I          L N ++ AYGKC  V  A    + +
Sbjct: 29  HYRDALRQC---QDLESVRQIHDRISGAASANV-FLGNEIVRAYGKCGSVASARAAFDAI 84

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
            +++  SW S+LTAY Q    +  + ++  M     LQP+  V+ +++ AC S+ A   G
Sbjct: 85  ARKNDYSWGSMLTAYAQNGHYRAALDLYKRM----DLQPNPVVYTTVLGACASIKALEEG 140

Query: 125 KQVHACFVLSPFCDDDVV-KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           K +H+    +     DV+ ++SL+ MYAKC                              
Sbjct: 141 KAIHSRISGTKGLKLDVILENSLLTMYAKC------------------------------ 170

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV--L 241
            G  +DA  +FE+   R++  W A+++   QS +  +A   + +M       V+P V   
Sbjct: 171 -GSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMD------VEPSVRTF 223

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           +S++ AC+N  +L+ G++IH L+ + G E  L + NA++ MYA+C  +  A  IF R+ R
Sbjct: 224 TSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPR 283

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           +DVVSW+++I   A+    +E +  Y +M   GV+PN  TF  ++ AC+ VG +  GR +
Sbjct: 284 RDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAV 343

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
              ++ + G   +L + T L+DL +  G LDEA +L   +    DE  W  L+  
Sbjct: 344 HDQILGN-GYKITLVNGTALVDLYTSYGSLDEARSLFDQIE-NRDEGLWTVLIGG 396



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 115/451 (25%), Positives = 204/451 (45%), Gaps = 45/451 (9%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKL-GLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           Y   L  CA  +     K +H++I    GL     L N+L+  Y KC  ++ A  L E M
Sbjct: 124 YTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERM 183

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
             R   SW +++ AY Q+   ++ I ++  M     ++P    F S++ AC +LG    G
Sbjct: 184 SGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM----DVEPSVRTFTSVLSACSNLGLLDQG 239

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           +++HA                            ++R     + L+N     A+L+ YAR 
Sbjct: 240 RKIHALI--------------------------SSRGTELDLSLQN-----ALLTMYARC 268

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR--NEIDAFYSFIEMRREGVDIVDPLVLS 242
               DA +IF++ P R++  W+A+++   ++   +E   FYS  +M+ EGV   +    +
Sbjct: 269 KCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYS--KMQLEGVR-PNYYTFA 325

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           S++ ACA+   L  G+ +H  ++  GY+  L    A+VD+Y     +  A+ +F ++  +
Sbjct: 326 SVLLACASVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSLFDQIENR 385

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKL 361
           D   WT +I G ++ G     L LY EM +    P  ++ +  +I AC+ +G     R+ 
Sbjct: 386 DEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACASLGAFADARQA 445

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
             S IE  G+       T L+++ SR G+L+ A  +   M    D   W  L++    H 
Sbjct: 446 -HSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMS-SRDTLAWTTLIAGYAKHG 503

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
              +   +    + L+  +PS    +  +YA
Sbjct: 504 EHGLALGLYKE-MELEGAEPSELTFMVVLYA 533


>gi|357521373|ref|XP_003630975.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524997|gb|AET05451.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 701

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 220/605 (36%), Positives = 347/605 (57%), Gaps = 52/605 (8%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKC---------------DLVQYAHHLLEEMPQRD 68
           +LHA  ++LGL     + N LI+ Y K                  +     + + MP RD
Sbjct: 131 SLHACTVRLGLDSDLYIANALINTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRD 190

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW +++  + Q  +  + + +   M    KL+PD F  +S++           GK++H
Sbjct: 191 VVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIH 250

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              V + F  D  + SSL+DMYAKC                                R +
Sbjct: 251 GYAVRNGFDGDVFIGSSLIDMYAKCN-------------------------------RLE 279

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS--SIVG 246
            ++  F   P ++   W ++++G VQ+  E D    F   RR   + V P+ +S  S++ 
Sbjct: 280 CSLRAFYILPRKDAISWNSIIAGCVQN-GEFDRGLGF--FRRMLKENVKPMAVSFSSVIP 336

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           ACA+   L LG+Q+HG ++ LG++   FI++++VDMYAKC +I  A+ +F R+ ++D+V+
Sbjct: 337 ACAHLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVA 396

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           WT+II+G A HG A + ++L++ M+  GV+P  V F+ ++ ACSH GLV +G + F SM 
Sbjct: 397 WTAIIMGCAMHGHALDAVSLFENMLEDGVRPCYVAFMAVLTACSHAGLVDEGWRYFNSME 456

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHRNTEM 425
            D+GI P L+HY  + DLL R+G L+EA + I  M   +P    W+ LL+AC+ H++ E+
Sbjct: 457 RDFGIAPGLEHYAAVADLLGRAGRLEEAYDFISNMRGVQPTGSVWSILLAACRAHKSVEL 516

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
             +V + LLS+  E+  +Y+L+SN+Y++A  W+  +++R  M    +KK P  S+IE G 
Sbjct: 517 AEKVLDKLLSVDSENMGAYVLMSNIYSAAQRWKDAARLRIHMRKKGLKKTPACSWIEVGN 576

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H F AG+ SHP  D+I + L  L  +M++ GYV DT+ VLHD++++ K   L  HSER
Sbjct: 577 QVHTFMAGDKSHPYYDKINKALDVLLEQMEKEGYVIDTNQVLHDVDEELKRELLHNHSER 636

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+AYG++ +  GT +RV+KN+RVC DCH  +K I++I  REI VRD +R+HHFK+G CS
Sbjct: 637 LAIAYGIISTTAGTTIRVIKNIRVCADCHTAIKFITKIVGREITVRDNSRFHHFKNGSCS 696

Query: 606 CNDFW 610
           C D+W
Sbjct: 697 CGDYW 701



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 174/350 (49%), Gaps = 19/350 (5%)

Query: 71  SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC 130
           +W+SI+  Y   +L   + S F++M +L  + P+  VF SL+KA   L   +L   +HAC
Sbjct: 77  AWSSIIKCYTSHSLLHLSFSSFNSMRSL-SVPPNRHVFPSLLKASTLLKHHKLAHSLHAC 135

Query: 131 FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
            V      D  + ++L++ YAK    +NA  VFD    +       +             
Sbjct: 136 TVRLGLDSDLYIANALINTYAKF---HNAGKVFDVFPKRGESGIDCV------------- 179

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
            ++F+  PVR++  W  +++G  Q+   ++A     EM + G    D   LSSI+   A 
Sbjct: 180 KKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALDMVREMGKNGKLKPDSFTLSSILPIFAE 239

Query: 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
              +  GK+IHG  +  G++  +FI ++++DMYAKC+ +  +   F  + RKD +SW SI
Sbjct: 240 HVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDAISWNSI 299

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370
           I G  Q+G+ +  L  +  M+   VKP  V+F  +I AC+H+  +  GR+L   ++   G
Sbjct: 300 IAGCVQNGEFDRGLGFFRRMLKENVKPMAVSFSSVIPACAHLTALSLGRQLHGCIVR-LG 358

Query: 371 ITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
              +    + L+D+ ++ G++  A  +   +  + D   W A++  C  H
Sbjct: 359 FDDNEFIASSLVDMYAKCGNIKMARYVFDRID-KRDMVAWTAIIMGCAMH 407



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L + A H      K +H   ++ G      + ++LID Y KC+ ++ +      +P++D 
Sbjct: 234 LPIFAEHVDVNKGKEIHGYAVRNGFDGDVFIGSSLIDMYAKCNRLECSLRAFYILPRKDA 293

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW SI+    Q     + +  F  ML  + ++P    F+S++ AC  L A  LG+Q+H 
Sbjct: 294 ISWNSIIAGCVQNGEFDRGLGFFRRMLK-ENVKPMAVSFSSVIPACAHLTALSLGRQLHG 352

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
           C V   F D++ + SSLVDMYAKCG    AR VFD I  ++ V+WTA++   A  G   D
Sbjct: 353 CIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVAWTAIIMGCAMHGHALD 412

Query: 190 AMEIFEQ 196
           A+ +FE 
Sbjct: 413 AVSLFEN 419



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/236 (25%), Positives = 107/236 (45%), Gaps = 21/236 (8%)

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
           +F SF  MR   V   +  V  S++ A       +L   +H   + LG +S L+I+NA++
Sbjct: 94  SFSSFNSMRSLSVP-PNRHVFPSLLKASTLLKHHKLAHSLHACTVRLGLDSDLYIANALI 152

Query: 281 DMYAKC---------------SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA 325
           + YAK                S I   K +F  M  +DVVSW ++I G AQ+G   E L 
Sbjct: 153 NTYAKFHNAGKVFDVFPKRGESGIDCVKKVFDMMPVRDVVSWNTVIAGFAQNGMYVEALD 212

Query: 326 LYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
           +  EM   G +KP+  T   ++   +    V KG+++    + + G    +   + L+D+
Sbjct: 213 MVREMGKNGKLKPDSFTLSSILPIFAEHVDVNKGKEIHGYAVRN-GFDGDVFIGSSLIDM 271

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKP 438
            ++   L+ +      +P   D  +W ++++ C  +   + G      +L  ++KP
Sbjct: 272 YAKCNRLECSLRAFYILP-RKDAISWNSIIAGCVQNGEFDRGLGFFRRMLKENVKP 326



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 3/108 (2%)

Query: 13  CARHQIALTV-KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVS 71
           CA H  AL++ + LH  I++LG      + ++L+D Y KC  ++ A ++ + + +RD V+
Sbjct: 338 CA-HLTALSLGRQLHGCIVRLGFDDNEFIASSLVDMYAKCGNIKMARYVFDRIDKRDMVA 396

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
           W +I+            +S+F  ML  D ++P +  F +++ AC   G
Sbjct: 397 WTAIIMGCAMHGHALDAVSLFENMLE-DGVRPCYVAFMAVLTACSHAG 443


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 228/636 (35%), Positives = 348/636 (54%), Gaps = 68/636 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC----------------DL 53
            + CA+ +     K LHA  +KL LH +  +  +LI  Y +                 D 
Sbjct: 134 FKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDA 193

Query: 54  VQY---------------AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
           V +               A  L +E+P +D VSW +++  Y Q+   ++ ++ F+ M   
Sbjct: 194 VSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEA 253

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           D + P+     S++ ACG L +  LGK + +      F  +  + ++LVDMY+KCG    
Sbjct: 254 D-VSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGT 312

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           AR +FD ++ K+ + W  M+  Y      ++A+ +FE                       
Sbjct: 313 ARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEV---------------------- 350

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV----IALGYESCLF 274
                    M RE V   D   L+ ++ ACA+   L+LGK +H  +       G  + + 
Sbjct: 351 ---------MLRENVTPNDVTFLA-VLPACASLGALDLGKWVHAYIDKNLKGTGNVNNVS 400

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
           +  +I+ MYAKC  +  A+ +F  M  + + SW ++I G A +G AE  L L++EM++ G
Sbjct: 401 LWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMINEG 460

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
            +P+++TFVG++ AC+  G V  G + F SM +DYGI+P LQHY C++DLL+RSG  DEA
Sbjct: 461 FQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKFDEA 520

Query: 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454
           + L+  M  EPD   W +LL+AC+ H   E G  VA  L  L+PE+  +Y+LLSN+YA A
Sbjct: 521 KVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIYAGA 580

Query: 455 AMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEM 514
             W  V+K+R  ++   +KK PG + IE     H F  G+  HP  + IF +L E+D  +
Sbjct: 581 GRWDDVAKIRTKLNDKGMKKVPGCTSIEIDGVVHEFLVGDKFHPQSENIFRMLDEVDRLL 640

Query: 515 KRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCH 574
           +  G+VPDTS VL+DM+++ KE  L  HSE+LA+A+GL+ + PG+ +R+VKNLRVC +CH
Sbjct: 641 EETGFVPDTSEVLYDMDEEWKEGALTQHSEKLAIAFGLISTKPGSTIRIVKNLRVCRNCH 700

Query: 575 IVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
              K+IS+I  REI+ RD  R+HHFKDG CSCND W
Sbjct: 701 SATKLISKIFNREIIARDRNRFHHFKDGFCSCNDRW 736



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 135/450 (30%), Positives = 220/450 (48%), Gaps = 45/450 (10%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLID--AYGKCDLVQYA---HHLLEEMPQRDHVSWASI 75
           ++K +H+ IIK GLH      + LI+  A      + YA    H +   P    + W ++
Sbjct: 40  SLKQIHSLIIKSGLHNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFI-WNTL 98

Query: 76  LTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP 135
           + A++    P  ++ +FS ML    L P+   F SL K+C    AT   KQ+HA  +   
Sbjct: 99  IRAHSLTPTPTSSLHLFSQMLH-SGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLA 157

Query: 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
                 V +SL+ MY++ G   +AR VFD   L+++VS+TA+++ Y   G   DA  +F+
Sbjct: 158 LHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFD 217

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
           + P +++  W A+++G VQS    +A   F  M+   V   +   + S++ AC +   LE
Sbjct: 218 EIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVS-PNQSTMVSVLSACGHLRSLE 276

Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
           LGK I   V   G+   L + NA+VDMY+KC +I  A+ +F  M  KDV+ W ++I G  
Sbjct: 277 LGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYC 336

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR---------------- 359
                EE L L++ M+   V PN+VTF+ ++ AC+ +G +  G+                
Sbjct: 337 HLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNV 396

Query: 360 ---KLFKSMIEDYGI---------------TPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
               L+ S+I  Y                 + SL  +  ++  L+ +GH + A  L + M
Sbjct: 397 NNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEM 456

Query: 402 ---PFEPDEPTWAALLSACKHHRNTEMGTR 428
               F+PD+ T+  +LSAC      E+G R
Sbjct: 457 INEGFQPDDITFVGVLSACTQAGFVELGHR 486


>gi|359485813|ref|XP_003633340.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 679

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/668 (35%), Positives = 364/668 (54%), Gaps = 72/668 (10%)

Query: 8   HRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYG--KCDLVQYAHHLLEEMP 65
            R+ +CA  +    V+ LHA  +K  +  +  + + L+  Y   K + + YA  + + + 
Sbjct: 19  QRMGLCAPQE----VEQLHAFSLKTAIFNHPFVSSRLLALYSDPKINDLGYARSIFDRIQ 74

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +R  + W +I+  Y +       I +F  ++   +  PD+F    ++K C  LG  + GK
Sbjct: 75  RRSLIHWNTIIKCYVENQFSHDGIVLFHELV--HEYLPDNFTLPCVIKGCARLGVVQEGK 132

Query: 126 QVH------------------------------ACFVLSPFCDDDVVK-SSLVDMYAKCG 154
           Q+H                              A  V     D DVV  +SL+D YA+CG
Sbjct: 133 QIHGLALKIGFGSDVFVQGSLVNMYSKCGEIDCARKVFDGMIDKDVVLWNSLIDGYARCG 192

Query: 155 -----------LPN--------------------NARAVFDSIKLKNSVSWTAMLSAYAR 183
                      +P                     +AR +FD +  +N VSW AM++ Y +
Sbjct: 193 EIDIALQLFEEMPERDAFSWTVLVDGLSKCGKVESARKLFDQMPCRNLVSWNAMINGYMK 252

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           SG    A+E+F Q P+ +L  W  +++G   +   +DA   F  M + G        L S
Sbjct: 253 SGDFDSALELFYQMPIWDLVTWNLMIAGYELNGQFMDAVKMFFMMLKLGSR-PSHATLVS 311

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++ A +  AVL  G+ IH  +   G+E    +  ++++MYAKC  I +A  +F  +++K 
Sbjct: 312 VLSAVSGLAVLGKGRWIHSYMEKNGFELDGILGTSLIEMYAKCGCIESALTVFRAIQKKK 371

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           V  WT+IIVG   HG A   LAL+ EM   G+KPN + F+G++ AC+H GLV  GR+ F 
Sbjct: 372 VGHWTAIIVGLGIHGMANHALALFLEMCKTGLKPNAIIFIGVLNACNHAGLVDDGRQYFD 431

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
            M+ +Y I P+L+HY CL+D+L R+GHL+EA+N I+ MP  P++  W +LL   ++H   
Sbjct: 432 MMMNEYKIEPTLEHYGCLVDILCRAGHLEEAKNTIENMPISPNKVIWMSLLGGSRNHGKI 491

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           ++G   A  ++ + PE    YILLSN+YA++ MW+ VS VR++M     +K+PG S +E 
Sbjct: 492 DIGEYAAQRVIEVAPETIGCYILLSNMYAASGMWEKVSHVREMMYKRGFRKDPGCSSVEH 551

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDME-QKEKERQLFWH 542
               H F  G+ SHP   EI+  ++E+  ++K  G+VPDT+ VL  +E +KEKE +L  H
Sbjct: 552 KGTLHEFIVGDISHPQTKEIYAKMSEMKEKLKCVGHVPDTTQVLLCIEGEKEKEAELENH 611

Query: 543 SERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           SERLA+A+GL+   PG  +R++KNLRVC DCH V K++S+I  REI+VRD  R+HHFK+G
Sbjct: 612 SERLAIAFGLINVKPGIPIRIMKNLRVCNDCHSVTKLLSKIYSREIIVRDNCRFHHFKNG 671

Query: 603 KCSCNDFW 610
            CSC D+W
Sbjct: 672 SCSCMDYW 679


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/569 (38%), Positives = 324/569 (56%), Gaps = 33/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N LI+ Y +   ++ A  L +EM +R+  +W +++    Q    ++ +S+F  M  L  L
Sbjct: 132 NILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFL 191

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            PD F   S+++ C  L +   G++VHAC +   F    VV SSL  MY K         
Sbjct: 192 -PDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIK--------- 241

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
                                 SG   D  ++ +  P+R +  W  L++G  Q+    + 
Sbjct: 242 ----------------------SGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEV 279

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              +  M+  G    D +   S++ AC+  A L  G+QIH  VI  G  S L + ++++ 
Sbjct: 280 LNQYNMMKMAGFR-PDKITFVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLIS 338

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY++   +  +   F      DVV W+S+I     HG+ EE L L+ +M    ++ NEVT
Sbjct: 339 MYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVT 398

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+ L+YACSH GL  KG + F  M++ Y + P ++HYTC++DLL R+G L+EAE +I++M
Sbjct: 399 FLSLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSM 458

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P +PD   W  LL+ACK H+  EM  R++  ++ L P D +SY+LLSN++ASA  W +VS
Sbjct: 459 PVQPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLDAASYVLLSNIHASARNWLNVS 518

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           ++RK M    V+KEPG S++E     H F  G+ SHP   EI   L EL +E+K+ GYVP
Sbjct: 519 QIRKAMRDRSVRKEPGISWLELKNLVHQFSMGDKSHPQYFEIDLYLKELMSELKQHGYVP 578

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           +  SVLHDM+ +EKE  L  HSE+ A+A+ L+ +     +RV+KNLRVC DCH  +K IS
Sbjct: 579 ELGSVLHDMDNEEKEYNLAHHSEKFAIAFALMNTSENVPIRVMKNLRVCDDCHNAIKCIS 638

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           RI  REI+VRDA+R+HHFKDG+CSC ++W
Sbjct: 639 RIRNREIIVRDASRFHHFKDGECSCGNYW 667



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 185/351 (52%), Gaps = 8/351 (2%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D  +F+ L+++C  LG+   GKQVH+  + S    D  + + L++ Y+K G   ++  +F
Sbjct: 61  DPSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNFYSKLGQFKSSLVLF 120

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
            ++  +N +S+  +++ Y + G  + A ++F++   RN+  W A+++GL Q      A  
Sbjct: 121 SNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMIAGLTQFEFNKQALS 180

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            F EM   G  + D   L S++  CA    L  G+++H  ++  G+E    + +++  MY
Sbjct: 181 LFKEMYGLGF-LPDEFTLGSVLRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMY 239

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
            K   +   + +   M  + VV+W ++I G AQ+G  EE L  Y+ M  AG +P+++TFV
Sbjct: 240 IKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLNQYNMMKMAGFRPDKITFV 299

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            ++ ACS +  +G+G+++   +I+  G +  L   + L+ + SRSG L+++   IKA   
Sbjct: 300 SVLSACSELATLGQGQQIHAEVIKA-GASSVLAVVSSLISMYSRSGCLEDS---IKAFVD 355

Query: 404 EP--DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
               D   W+++++A   H   E    + + +  LK E  +    LS +YA
Sbjct: 356 RENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKME-ANEVTFLSLLYA 405



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 96/187 (51%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR CA  +  L  + +HA ++K G      + ++L   Y K   +     L++ MP R  
Sbjct: 201 LRGCAGLRSLLAGQEVHACLLKCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTV 260

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W +++    Q   P++ ++ ++ M+ +   +PD   F S++ AC  L     G+Q+HA
Sbjct: 261 VAWNTLIAGKAQNGCPEEVLNQYN-MMKMAGFRPDKITFVSVLSACSELATLGQGQQIHA 319

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +       V SSL+ MY++ G   ++   F   +  + V W++M++AY   GR ++
Sbjct: 320 EVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEE 379

Query: 190 AMEIFEQ 196
           A+E+F Q
Sbjct: 380 ALELFHQ 386



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 78/180 (43%), Gaps = 9/180 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L  C+        + +HA++IK G      + ++LI  Y +   ++ +     +  
Sbjct: 298 FVSVLSACSELATLGQGQQIHAEVIKAGASSVLAVVSSLISMYSRSGCLEDSIKAFVDRE 357

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
             D V W+S++ AY      ++ + +F  M  L K++ +   F SL+ AC   G    G 
Sbjct: 358 NFDVVLWSSMIAAYGFHGRGEEALELFHQMEDL-KMEANEVTFLSLLYACSHSGLKEKGT 416

Query: 126 QVHACFV----LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
           +     V    L P  +     + +VD+  + G    A  +  S+ ++ + + W  +L+A
Sbjct: 417 EYFDLMVKKYKLKPRIEH---YTCVVDLLGRAGRLEEAEGMIRSMPVQPDGIIWKTLLAA 473


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/589 (38%), Positives = 329/589 (55%), Gaps = 34/589 (5%)

Query: 22   VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
            V  +H   ++ GL     + +  I  Y +C  +  A  L +++  R   +W +++    Q
Sbjct: 543  VNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQ 602

Query: 82   ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
                ++ +S+F  M   +   PD   F +++ A     A    K+VH+            
Sbjct: 603  QRCGREALSLFLQM-QREGFIPDATTFINILSANVDEEALEWVKEVHS----------HA 651

Query: 142  VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
              + LVD+                 ++ N     A++  Y++ G  K A ++F+    RN
Sbjct: 652  TDAGLVDL-----------------RVGN-----ALVHTYSKCGNVKYAKQVFDDMVERN 689

Query: 202  LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
            +  WT ++ GL Q     DAF  F++M REG+ + D     SI+ ACA+   LE  K++H
Sbjct: 690  VTTWTMMIGGLAQHGCGHDAFSHFLQMLREGI-VPDATTYVSILSACASTGALEWVKEVH 748

Query: 262  GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
               ++ G  S L + NA+V MYAKC  I  A+ +F  M  +DV SWT +I G AQHG+  
Sbjct: 749  NHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGL 808

Query: 322  ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
            E L  + +M S G KPN  ++V ++ ACSH GLV +GR+ F SM +DYGI P+++HYTC+
Sbjct: 809  EALDFFVKMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCM 868

Query: 382  LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
            +DLL R+G L+EAE  I  MP EPD+  W ALL AC  + N EM    A   L LKP+  
Sbjct: 869  VDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSA 928

Query: 442  SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            S+Y+LLSN+YA+   W+    VR +M    ++KEPG S+IE     H F  G+TSHP   
Sbjct: 929  STYVLLSNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWIEVDNRIHSFVVGDTSHPESK 988

Query: 502  EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            EI+  L +L   +K +GYVPDT  VL + +Q+ KE+ L  HSE+LA+ YGL+ +     +
Sbjct: 989  EIYAQLNDLIERLKAKGYVPDTRLVLRNTDQEHKEQALCSHSEKLAIVYGLMHTQSKDPI 1048

Query: 562  RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            RV KNLRVC DCH   K IS+IT REIV RDA R+HHFKDG CSC D+W
Sbjct: 1049 RVYKNLRVCSDCHTATKFISKITGREIVARDAKRFHHFKDGVCSCGDYW 1097



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 149/615 (24%), Positives = 268/615 (43%), Gaps = 73/615 (11%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y++ L+ C + +  L  K +H  IIK G+ Q   + N L+  Y +C  +Q A  + +++ 
Sbjct: 121 YVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLL 180

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +++   W +++  Y +    +  + ++  M   +  QP+   + S++KAC      + GK
Sbjct: 181 KKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQ-ECGQPNEITYLSILKACCCPVNLKWGK 239

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++HA  + S F  D  V+++LV+MY KCG   +A+ +FD +  +N +SWT M+   A  G
Sbjct: 240 KIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYG 299

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
           R +                               +AF+ F++M+REG  I +     SI+
Sbjct: 300 RGQ-------------------------------EAFHLFLQMQREGF-IPNSYTYVSIL 327

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            A A+   LE  K++H   +  G    L + NA+V MYAK   I  A+ +F  M  +D+ 
Sbjct: 328 NANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIF 387

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG-KGRKLFKS 364
           SWT +I G AQHG+ +E  +L+ +M   G  PN  T++ ++ A +       +  K+   
Sbjct: 388 SWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHK 447

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
             E+ G    L+    L+ + ++ G +D+A  +   M  + D  +W A++     +    
Sbjct: 448 HAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMC-DRDVISWNAMMGGLAQN---G 503

Query: 425 MGTRVANHLLSLKPE----DPSSYILLSNVYASAAMWQHVSKVRK------LMSVMEVKK 474
            G       L ++ E    D ++Y+ L N + S    + V++V K      L+S   V  
Sbjct: 504 CGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGS 563

Query: 475 EPGYSYIEFGKGS-----------------HIFYAGETSHPLKDEIFELLTELDAEMKRR 517
              + YI  G                    +    G        E   L      +M+R 
Sbjct: 564 AFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFL----QMQRE 619

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSE--RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHI 575
           G++PD ++ ++ +     E  L W  E    A   GL+    G  L  V     CG+   
Sbjct: 620 GFIPDATTFINILSANVDEEALEWVKEVHSHATDAGLVDLRVGNAL--VHTYSKCGNVKY 677

Query: 576 VMKMISRITKREIVV 590
             ++   + +R +  
Sbjct: 678 AKQVFDDMVERNVTT 692



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 151/317 (47%), Gaps = 34/317 (10%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D F + ++++ C       L KQVH C + S    +  V + L+ +Y +CG    AR VF
Sbjct: 117 DSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVF 176

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           D +  KN   WT M+  YA  G  +DAM ++++                           
Sbjct: 177 DKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDK--------------------------- 209

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
               MR+E     + +   SI+ AC     L+ GK+IH  +I  G++S + +  A+V+MY
Sbjct: 210 ----MRQE-CGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMY 264

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
            KC  I  A+ IF +M  ++V+SWT +I G A +G+ +E   L+ +M   G  PN  T+V
Sbjct: 265 VKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYV 324

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            ++ A +  G +   +++    + + G+   L+    L+ + ++SG +D+A  +   M  
Sbjct: 325 SILNANASAGALEWVKEVHSHAV-NAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMT- 382

Query: 404 EPDEPTWAALLSACKHH 420
           E D  +W  ++     H
Sbjct: 383 ERDIFSWTVMIGGLAQH 399



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 133/256 (51%), Gaps = 11/256 (4%)

Query: 214 QSRNEIDA--FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271
           Q+ N I A    + +++R +    +D     +I+  C     + L KQ+H  +I  G E 
Sbjct: 92  QTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAKQVHVCIIKSGMEQ 151

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
            L+++N ++ +Y +C  +  A+ +F ++ +K++  WT++I G A++G AE+ + +YD+M 
Sbjct: 152 NLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMR 211

Query: 332 SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
               +PNE+T++ ++ AC     +  G+K+   +I+  G    ++  T L+++  + G +
Sbjct: 212 QECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQS-GFQSDVRVETALVNMYVKCGSI 270

Query: 392 DEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED--PSSYILLS- 448
           ++A+ +   M  E +  +W  ++    H+     G    +  L ++ E   P+SY  +S 
Sbjct: 271 EDAQLIFDKM-VERNVISWTVMIGGLAHYGR---GQEAFHLFLQMQREGFIPNSYTYVSI 326

Query: 449 -NVYASAAMWQHVSKV 463
            N  ASA   + V +V
Sbjct: 327 LNANASAGALEWVKEV 342



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/185 (21%), Positives = 78/185 (42%), Gaps = 9/185 (4%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  L  CA       VK +H   +  GL     + N L+  Y KC  +  A  + ++M 
Sbjct: 728 YVSILSACASTGALEWVKEVHNHAVSAGLVSDLRVGNALVHMYAKCGSIDDARSVFDDMV 787

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +RD  SW  ++    Q     + +  F  M + +  +P+ + + +++ AC   G    G+
Sbjct: 788 ERDVFSWTVMIGGLAQHGRGLEALDFFVKMKS-EGFKPNGYSYVAVLTACSHAGLVDEGR 846

Query: 126 Q----VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
           +    +   + + P  +     + +VD+  + GL   A     ++ ++ +   W A+L A
Sbjct: 847 RQFLSMTQDYGIEPTMEH---YTCMVDLLGRAGLLEEAELFILNMPIEPDDAPWGALLGA 903

Query: 181 YARSG 185
               G
Sbjct: 904 CVTYG 908


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/508 (41%), Positives = 313/508 (61%), Gaps = 4/508 (0%)

Query: 106 FVFASLVK-ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFD 164
           F F++L K A  S              ++  F     V++SL+  Y  CG    AR VFD
Sbjct: 142 FAFSTLAKSATASRSLPAAAAAHAVSVLVGGFDRHRFVENSLIGAYVACGDVGAARKVFD 201

Query: 165 SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS 224
            +  K+ +SWT+++ AY RSG  + A E+F + PV+++  WTA+V+G  Q+   + A   
Sbjct: 202 EMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEV 261

Query: 225 FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284
           F  M   G+ ++D + L+  + ACA    L     +  +    G+ + + + + +VDMYA
Sbjct: 262 FDRMAELGM-VIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYA 320

Query: 285 KCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS-AGVKPNEVTFV 343
           KC  I  A  +F  M+ K+V +++S+I G A HG+A E +AL+ EMV+ A V+PN VTF+
Sbjct: 321 KCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHVTFI 380

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
           G++ ACSH G+VG+GR  F  M + YGI PS  HY C++DLL R+G +DEA +L+++M  
Sbjct: 381 GVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRSMSV 440

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
            P    W ALL AC+ H  +E+   VA HL  L+PE   +Y+LLSN+ ASA  W+ VSKV
Sbjct: 441 TPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEPESIGNYVLLSNILASAGKWEEVSKV 500

Query: 464 RKLMSVMEVKKEPGYSYIEFGKG-SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPD 522
           R LM    +KK+P  S  E   G  H F+AG+ +HP   EI + L EL A++K  GYVP 
Sbjct: 501 RILMRKQRLKKDPAVSLFEGRDGLVHQFFAGDNAHPRTHEIKKALLELVAKLKLEGYVPI 560

Query: 523 TSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISR 582
            SS+++D+  +EKER L  HSE+LA+++GLL    G  +R++KNLR+C DCH+ M+++SR
Sbjct: 561 LSSIVYDVNDEEKERLLMGHSEKLALSFGLLTLGSGCTIRIIKNLRICDDCHLFMQLVSR 620

Query: 583 ITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +   EI+VRD  R+HHFK+G+CSC  FW
Sbjct: 621 VESVEIIVRDNMRFHHFKNGECSCGGFW 648



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 1/155 (0%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
            +++ AY +   ++ A  +    P +D V+W +++T Y Q  +P K + +F  M  L  +
Sbjct: 212 TSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVKALEVFDRMAELG-M 270

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             D       + AC  LGA R    V      + F ++ VV S LVDMYAKCGL + A  
Sbjct: 271 VIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASK 330

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           VF  ++ KN  ++++M++  A  GR  +A+ +F++
Sbjct: 331 VFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKE 365



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/158 (22%), Positives = 72/158 (45%), Gaps = 8/158 (5%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           L+D Y KC L+  A  +   M +++  +++S++          + I++F  M+    ++P
Sbjct: 315 LVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEP 374

Query: 104 DHFVFASLVKACGSLGATRLGK----QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           +H  F  ++ AC   G    G+    Q+   + + P  D     + +VD+  + GL + A
Sbjct: 375 NHVTFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADH---YACMVDLLGRAGLVDEA 431

Query: 160 RAVFDSIKLK-NSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             +  S+ +  +   W A+L A    G+ + A  + E 
Sbjct: 432 LDLVRSMSVTPHGGVWGALLGACRIHGKSEIAKVVAEH 469


>gi|297745420|emb|CBI40500.3| unnamed protein product [Vitis vinifera]
          Length = 1133

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/606 (35%), Positives = 354/606 (58%), Gaps = 7/606 (1%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L+ C R         +H  +IK G      L   L++ YG+C  ++ A+ +  EMP  + 
Sbjct: 530  LKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEA 589

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGS-LGATRLGKQVH 128
            + W   +    Q+   QK + +F  M     L+ +      +++A  S LG   +GK+ H
Sbjct: 590  LLWNEAIILNLQSEKLQKGVELFRKM-QFSFLKAETATIVRVLQASISELGFLNMGKETH 648

Query: 129  ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
               + + F  D  V +SL+DMY K     +A+AVFD++K +N  +W +++S Y+  G  +
Sbjct: 649  GYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFE 708

Query: 189  DAMEIFEQAPVR----NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
            DA+ +  Q        +L  W  ++SG        +A   F +M++EGV + +   ++ +
Sbjct: 709  DALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCGKEALAFFAQMQQEGV-MPNSASITCL 767

Query: 245  VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
            + ACA+ ++L+ GK+IH L I  G+   +F++ A++DMY+K S +  A  +F R++ K +
Sbjct: 768  LRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTL 827

Query: 305  VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
             SW  +I+G A  G  +E +++++EM   GV P+ +TF  L+ AC + GL+G+G K F S
Sbjct: 828  ASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGEGWKYFDS 887

Query: 365  MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
            MI DY I P L+HY C++DLL R+G+LDEA +LI  MP +PD   W ALL +C+ H+N +
Sbjct: 888  MITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLK 947

Query: 425  MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
                 A +L  L+P + ++YIL+ N+Y+    W+ +  +R+LM    V+    +S+I+  
Sbjct: 948  FAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQIN 1007

Query: 485  KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
            +  H+F + E  HP   +I+  L +L +EMK+ GYVPD + V  +M++ EK++ L  H+E
Sbjct: 1008 QRVHVFSSDEKPHPDAGKIYFELYQLVSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTE 1067

Query: 545  RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
            +LA+ YGL+K   G  +RV+KN R+C DCH   K IS +  RE+ +RD  R+HHF++GKC
Sbjct: 1068 KLAITYGLIKMKAGEPIRVIKNTRICSDCHSAAKYISLVKARELFLRDGVRFHHFREGKC 1127

Query: 605  SCNDFW 610
            SCNDFW
Sbjct: 1128 SCNDFW 1133



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/365 (22%), Positives = 165/365 (45%), Gaps = 39/365 (10%)

Query: 22  VKTLHAQIIKLGLHQYGP--LPNTLIDAY-GKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           +K +HAQ+IKL   ++ P      LI +Y G  D    A      +P R+++ W S +  
Sbjct: 439 IKMMHAQMIKLP-QKWNPDAAAKNLISSYLGFGDFWSAAMVFYVGLP-RNYLKWNSFVEE 496

Query: 79  Y-NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
           + + A      + +F  +     +  D  V++  +K C  +    LG ++H C +   F 
Sbjct: 497 FKSSAGSLHIVLEVFKELHG-KGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFD 555

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D  ++ +L++ Y +C     A  VF  +    ++ W   +    +S + +  +E+F + 
Sbjct: 556 LDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKM 615

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
               L   TA +  ++Q+                               + +    L +G
Sbjct: 616 QFSFLKAETATIVRVLQA-------------------------------SISELGFLNMG 644

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           K+ HG V+  G++  +++  +++DMY K   + +A+ +F  M+ +++ +W S++ G +  
Sbjct: 645 KETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMKNRNIFAWNSLVSGYSFK 704

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G  E+ L L ++M   G+KP+ VT+ G+I   +  G  GK    F + ++  G+ P+   
Sbjct: 705 GMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWG-CGKEALAFFAQMQQEGVMPNSAS 763

Query: 378 YTCLL 382
            TCLL
Sbjct: 764 ITCLL 768



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 123/285 (43%), Gaps = 11/285 (3%)

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS-FIEMRREGVDI 235
           ++S+Y   G    A  +F     RN   W + V     S   +      F E+  +GV +
Sbjct: 462 LISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGV-V 520

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
            D  V S  +  C     + LG +IHG +I  G++  +++  A+++ Y +C  +  A  +
Sbjct: 521 FDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQV 580

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC-SHVGL 354
           F  M   + + W   I+   Q  + ++ + L+ +M  + +K    T V ++ A  S +G 
Sbjct: 581 FHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQASISELGF 640

Query: 355 VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           +  G++    ++ + G    +   T L+D+  ++  L  A+ +   M    +   W +L+
Sbjct: 641 LNMGKETHGYVLRN-GFDCDVYVGTSLIDMYVKNHSLTSAQAVFDNMK-NRNIFAWNSLV 698

Query: 415 SACKHHRNTEMGTRVANHL--LSLKPEDPSSYILLSNVYASAAMW 457
           S        E   R+ N +    +KP+     +  + + +  AMW
Sbjct: 699 SGYSFKGMFEDALRLLNQMEKEGIKPD----LVTWNGMISGYAMW 739


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/592 (36%), Positives = 344/592 (58%), Gaps = 35/592 (5%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
             V+ +HAQI   G  +   + N L+  Y +   ++ A  L + M +R   SW+ I+  Y
Sbjct: 67  FQVRQVHAQIATNGAFRNLAVANKLLYMYVERGALEDAQELFDGMSKRHPYSWSVIVGGY 126

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD- 138
            +         +F  +L       D +    +++AC  L   + G+ +H C  L    D 
Sbjct: 127 AKVGNFFSCFWMFRELLR-SGAPLDDYSAPVVIRACRDLKDLKCGRLIH-CITLKCGLDY 184

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
              V ++LVDMYA+C +                                +DA +IF +  
Sbjct: 185 GHFVCATLVDMYARCKVV-------------------------------EDAHQIFVKMW 213

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            R+L  WT ++  L +S   +++   F  MR +G+ + D + L ++V ACA    +   K
Sbjct: 214 KRDLATWTVMIGALAESGVPVESLVFFDRMRNQGI-VPDKVALVTVVYACAKLGAMNKAK 272

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
            IH  +   GY   + +  A++DMYAKC  + +A+ IF RM+ ++V++W+++I     HG
Sbjct: 273 AIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHG 332

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
           Q E+ L L+  M+ +G+ PN +TFV L+YACSH GL+ +G++ F SM ++YG+TP ++HY
Sbjct: 333 QGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTPDVKHY 392

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
           TC++DLL R+G LDEA  +I+ MP E DE  W ALL AC+ HR+ ++  RVA  LL L+ 
Sbjct: 393 TCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSLLKLQS 452

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
           + P  Y+LLSN+YA+A  W+ ++K R LM+   ++K PG ++IE G+  + F  G+ +HP
Sbjct: 453 QKPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWIEVGEKLYQFGVGDKTHP 512

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
             +EI+++L  L  +++  GY PDT+ VL+D++++ K+  L+ HSE+LA+A+GLL    G
Sbjct: 513 RSNEIYKMLKRLGEKLEVAGYHPDTNDVLYDVDEEVKQGLLYSHSEKLAIAFGLLVLPQG 572

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             +R+ KNLRVCGDCH   K +S I ++ I+VRDA R+HHFK+G CSC D+W
Sbjct: 573 HPIRITKNLRVCGDCHTFCKFVSLIEQKTIIVRDAKRFHHFKEGVCSCRDYW 624



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 104/185 (56%), Gaps = 1/185 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +R C   +     + +H   +K GL     +  TL+D Y +C +V+ AH +  +M +RD 
Sbjct: 158 IRACRDLKDLKCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQIFVKMWKRDL 217

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            +W  ++ A  ++ +P +++  F  M     + PD     ++V AC  LGA    K +HA
Sbjct: 218 ATWTVMIGALAESGVPVESLVFFDRMRN-QGIVPDKVALVTVVYACAKLGAMNKAKAIHA 276

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               + +  D ++ ++++DMYAKCG   +AR +FD ++++N ++W+AM++AY   G+ + 
Sbjct: 277 YINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAAYGYHGQGEK 336

Query: 190 AMEIF 194
           A+E+F
Sbjct: 337 ALELF 341



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 32/199 (16%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA+       K +HA I   G      L   +ID Y KC  V+ A  + + M  R+ ++W
Sbjct: 262 CAKLGAMNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITW 321

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
           ++++ AY      +K + +F  ML    + P+   F SL+ AC   G    G++      
Sbjct: 322 SAMIAAYGYHGQGEKALELFPMMLR-SGILPNRITFVSLLYACSHAGLIEEGQRFF---- 376

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
                      SS+ D Y           V   +K      +T M+    R+GR  +A+E
Sbjct: 377 -----------SSMWDEY----------GVTPDVK-----HYTCMVDLLGRAGRLDEALE 410

Query: 193 IFEQAPV-RNLFLWTALVS 210
           + E  PV ++  LW AL+ 
Sbjct: 411 MIEGMPVEKDEVLWGALLG 429


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  426 bits (1096), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/590 (38%), Positives = 332/590 (56%), Gaps = 36/590 (6%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           T+H+  IK GL     + N LID Y +   ++    + + M  RD +SW SI+ AY    
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNE 327

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP--FCDDDV 141
            P + I +F  M  L ++QPD     SL      LG  R  + V   F L    F +D  
Sbjct: 328 QPLRAILLFQEM-RLSRIQPDCLTLISLASILSQLGEIRACRSVQG-FTLRKGWFLEDIT 385

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           + +++V MYAK GL ++ARAVF+ +                               P ++
Sbjct: 386 IGNAVVVMYAKLGLVDSARAVFNWL-------------------------------PNKD 414

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLSSIVGACANFAVLELGKQI 260
           +  W  ++SG  Q+    +A   +  M  EG +I  +     S++ AC+    L  G ++
Sbjct: 415 VISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACSQAGALRQGMKL 474

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG ++  G    +F+  ++ DMY KC  +  A  +F ++ R + V W ++I     HG  
Sbjct: 475 HGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHG 534

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           E+ + L+ EM+  GVKP+ +TFV L+ ACSH GLV +G   F+ M  DYGITPSL+HY C
Sbjct: 535 EKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGC 594

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DL  R+G L+ A N IK+MP +PD   W ALLSAC+ H N ++G   + HL  ++PE 
Sbjct: 595 MVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEH 654

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
              ++LLSN+YASA  W+ V ++R + S   ++K PG+S +E      +FY G  +HP+ 
Sbjct: 655 VGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMY 714

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
           +E++  LT L  ++K  GYVPD   VL D+E  EKE  L  HSERLA+A+ L+ +   T 
Sbjct: 715 EEMYRELTALHEKLKMVGYVPDHRFVLQDVEDDEKEHILMSHSERLAMAFALITTPAKTT 774

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +R+ KNLRVCGDCH V K IS+IT+REI+VRD+ R+HHFK+G CSC D+W
Sbjct: 775 IRIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 824



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 179/407 (43%), Gaps = 43/407 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            R C   Q A   K LHA+++     Q   +   L++ Y     V  A +  + +  RD 
Sbjct: 61  FRYCTNLQSA---KCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDV 117

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            +W  +++ Y +A    + I  FS  +    LQPD+  F S++KAC ++     G ++H 
Sbjct: 118 YAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNVTD---GNKIHC 174

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +   F  D  V +SL+ +Y + G   NAR +FD +  ++  SW AM+S Y +SG  K+
Sbjct: 175 LALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKE 234

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +                                     +G+  +D + + S++ AC 
Sbjct: 235 ALTL------------------------------------SDGLRAMDSVTVVSLLSACT 258

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
                  G  IH   I  G ES LF+SN ++D+YA+   +   + +F RM  +D++SW S
Sbjct: 259 EAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNS 318

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           II     + Q    + L+ EM  + ++P+ +T + L    S +G +   R +    +   
Sbjct: 319 IIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKG 378

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
                +     ++ + ++ G +D A  +   +P   D  +W  ++S 
Sbjct: 379 WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP-NKDVISWNTIISG 424


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/588 (37%), Positives = 331/588 (56%), Gaps = 34/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +++H    + G      +   ++D Y KC  V+ A  + + M  R+ VSW +++  Y Q 
Sbjct: 263 RSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQN 322

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++  + F  ML  + ++P +      + AC +LG    G+ VH          D  V
Sbjct: 323 GESEEAFATFLKMLD-EGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSV 381

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SL+ MY+KC   + A +VF ++K K  V+W AM+  YA++G   +A+ +         
Sbjct: 382 MNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNL--------- 432

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                 F EM+   +   D   L S++ A A+ +V    K IHG
Sbjct: 433 ----------------------FCEMQSHDIK-PDSFTLVSVITALADLSVTRQAKWIHG 469

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L I    +  +F+  A++D +AKC  I  A+ +F  M+ + V++W ++I G   +G   E
Sbjct: 470 LAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGRE 529

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L++EM +  VKPNE+TF+ +I ACSH GLV +G   F+SM E+YG+ P++ HY  ++
Sbjct: 530 ALDLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMV 589

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G LD+A   I+ MP +P      A+L AC+ H+N E+G + A+ L  L P+D  
Sbjct: 590 DLLGRAGRLDDAWKFIQDMPVKPGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGG 649

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            ++LL+N+YASA+MW  V++VR  M    ++K PG S +E     H FY+G T+HP    
Sbjct: 650 YHVLLANMYASASMWDKVARVRTAMEKKGIQKTPGCSLVELRNEVHTFYSGSTNHPQSKR 709

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L  L  EMK  GYVPDT+S+ HD+E+  KE+ L  HSERLA+A+GLL +  GT + 
Sbjct: 710 IYAYLETLGDEMKAAGYVPDTNSI-HDVEEDVKEQLLSSHSERLAIAFGLLNTRHGTAIH 768

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + KNLRVCGDCH   K IS +T REI+VRD  R+HHFK+G CSC D+W
Sbjct: 769 IRKNLRVCGDCHEATKYISLVTGREIIVRDLRRFHHFKNGICSCGDYW 816



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 204/444 (45%), Gaps = 80/444 (18%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  +I  G          +++ Y KC  ++ A+ + E MPQRD VSW +++  Y Q 
Sbjct: 162 REIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQN 221

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ + +   M    + +PD     S++ A   L A R+G+ +H     + F     V
Sbjct: 222 GFARRAVQVVLQMQEAGQ-KPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNV 280

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++++D Y KCG   +AR VF  +  +N VSW  M+  YA++G  +              
Sbjct: 281 ATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESE-------------- 326

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                            +AF +F++M  EGV+  +  ++ ++  ACAN   LE G+ +H 
Sbjct: 327 -----------------EAFATFLKMLDEGVEPTNVSMMGAL-HACANLGDLERGRYVHR 368

Query: 263 LV--IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           L+    +G++  + + N+++ MY+KC  +  A  +FG ++ K VV+W ++I+G AQ+G  
Sbjct: 369 LLDEKKIGFD--VSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCV 426

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHV---------------------------- 352
            E L L+ EM S  +KP+  T V +I A + +                            
Sbjct: 427 NEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLMDKNVFVCTAL 486

Query: 353 -------GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---P 402
                  G +   RKLF  M E + IT     +  ++D    +GH  EA +L   M    
Sbjct: 487 IDTHAKCGAIQTARKLFDLMQERHVIT-----WNAMIDGYGTNGHGREALDLFNEMQNGS 541

Query: 403 FEPDEPTWAALLSACKHHRNTEMG 426
            +P+E T+ ++++AC H    E G
Sbjct: 542 VKPNEITFLSVIAACSHSGLVEEG 565



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 111/463 (23%), Positives = 218/463 (47%), Gaps = 50/463 (10%)

Query: 17  QIALTVKTLHA---QIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWA 73
           ++  ++K LH     IIK G +        LI  + K + +  A  + E +  +  V + 
Sbjct: 52  ELCTSLKELHQILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYH 111

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           ++L  Y + +  +  +  +  M   D++ P  + F  L++  G     R G+++H   + 
Sbjct: 112 TMLKGYAKNSTLRDAVRFYERMRC-DEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVIT 170

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
           + F      +S+L  M                         TA+++ YA+  + +DA ++
Sbjct: 171 NGF------QSNLFAM-------------------------TAVVNLYAKCRQIEDAYKM 199

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
           FE+ P R+L  W  +V+G  Q+     A    ++M+  G    D + L S++ A A+   
Sbjct: 200 FERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQK-PDSITLVSVLPAVADLKA 258

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L +G+ IHG     G+E  + ++ A++D Y KC  + +A+ +F  M  ++VVSW ++I G
Sbjct: 259 LRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDG 318

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
            AQ+G++EE  A + +M+  GV+P  V+ +G ++AC+++G + +GR + + ++++  I  
Sbjct: 319 YAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHR-LLDEKKIGF 377

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
            +     L+ + S+   +D A ++   +  +    TW A++     +          N  
Sbjct: 378 DVSVMNSLISMYSKCKRVDIAASVFGNLKHKT-VVTWNAMILG---YAQNGCVNEALNLF 433

Query: 434 LSLKPED--PSSYILLSNVYASA-------AMWQHVSKVRKLM 467
             ++  D  P S+ L+S + A A       A W H   +R LM
Sbjct: 434 CEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRTLM 476


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 230/594 (38%), Positives = 329/594 (55%), Gaps = 42/594 (7%)

Query: 23  KTLHAQIIKLGLHQYGPLP----NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           +  HAQIIK       PLP    N L++ Y K D    A  LL   P R  V+W +++  
Sbjct: 26  RAAHAQIIKT---LDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAG 82

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
             Q       +  FS M   D +QP+ F F    KA GSL +  +GKQVHA  V +    
Sbjct: 83  SVQNGRFTSALFHFSNMRR-DSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQIS 141

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  V  S  DMY+K GL   AR                               ++F++ P
Sbjct: 142 DVFVGCSAFDMYSKAGLTEEAR-------------------------------KMFDEMP 170

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            RN+  W A +S  V      DA  +FIE R+EG++  D +V SS++ ACA  +VLE+GK
Sbjct: 171 ERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMV-SSVLSACAGLSVLEVGK 229

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
            +H L +       +F+ +A+VDMY KC  I  A+  F  M  +++V+W ++I G A  G
Sbjct: 230 SVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQG 289

Query: 319 QAEETLALYDEMVSAG--VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           QA+  + L+DEM      V PN VTFV ++ ACS  G V  G ++F+SM   YGI P  +
Sbjct: 290 QADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAE 349

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
           HY C++DLL R+G +++A   IK MP  P    W ALL A K    +E+G   A++L  L
Sbjct: 350 HYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFEL 409

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETS 496
            P D  +++LLSN++A+A  W+  + VRK M  + +KK  G S+I  G   H+F A +TS
Sbjct: 410 DPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNAVHVFQAKDTS 469

Query: 497 HPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSV 556
           H    EI  +L +L  EM+  GY+PDTS  L D+E++EK  ++++HSE++A+A+GL+   
Sbjct: 470 HERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKIALAFGLISIP 529

Query: 557 PGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            G  +R+ KNLR+CGDCH  +K IS I  REI+VRD   +H F+D +CSC D+W
Sbjct: 530 AGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSCRDYW 583



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 147/336 (43%), Gaps = 41/336 (12%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLS---PFCDDDVVKSSLVDMYAKCGLPN 157
           L P+    ASLV++  S   +RLG+  HA  + +   P      + + LV+MY+K   PN
Sbjct: 4   LSPNSL--ASLVESAVSTQCSRLGRAAHAQIIKTLDNPL--PSFIYNHLVNMYSKLDRPN 59

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
           +A+ +      ++ V+WT                               AL++G VQ+  
Sbjct: 60  SAQLLLSLTPNRSVVTWT-------------------------------ALIAGSVQNGR 88

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
              A + F  MRR+ +   D         A  +     +GKQ+H L +  G  S +F+  
Sbjct: 89  FTSALFHFSNMRRDSIQPND-FTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGC 147

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           +  DMY+K      A+ +F  M  +++ +W + +  +   G+ ++ L  + E    G++P
Sbjct: 148 SAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEARKEGIEP 207

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
            +     ++ AC+ + ++  G+ +    ++   +  ++   + L+D+  + G +++AE  
Sbjct: 208 TDFMVSSVLSACAGLSVLEVGKSVHTLAVKAC-VVGNIFVGSALVDMYGKCGSIEDAERA 266

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
              MP E +  TW A++    H    +M   + + +
Sbjct: 267 FDEMP-ERNLVTWNAMIGGYAHQGQADMAVTLFDEM 301


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  426 bits (1095), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/592 (36%), Positives = 346/592 (58%), Gaps = 11/592 (1%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA +++ GLH +  L   L  +Y     + ++  L    P  +   W  I+ A+   +L
Sbjct: 42  IHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFDL 101

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
               +S +S ML    +QP+ F  +SL+KAC         + VH+  +         V +
Sbjct: 102 FHHALSYYSQMLT-HPIQPNAFTLSSLLKAC----TLHPARAVHSHAIKFGLSSHLYVST 156

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
            LVD YA+ G   +A+ +FD++  ++ VS+TAML+ YA+ G   +A  +FE   ++++  
Sbjct: 157 GLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVC 216

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIV------DPLVLSSIVGACANFAVLELGK 258
           W  ++ G  Q     +A   F +M              + + + +++ +C     LE GK
Sbjct: 217 WNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAVLSSCGQVGALECGK 276

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
            +H  V   G +  + +  A+VDMY KC  +  A+ +F  M  KDVV+W S+I+G   HG
Sbjct: 277 WVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHG 336

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
            ++E L L+ EM   GVKP+++TFV ++ AC+H GLV KG ++F SM + YG+ P ++HY
Sbjct: 337 FSDEALQLFHEMCCIGVKPSDITFVAVLTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHY 396

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
            C+++LL R+G + EA +L+++M  EPD   W  LL AC+ H N  +G  +A  L+S   
Sbjct: 397 GCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSNVSLGEEIAEILVSNGL 456

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
               +Y+LLSN+YA+A  W  V+KVR +M    V+KEPG S IE     H F AG+  HP
Sbjct: 457 ASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCSSIEVKNRVHEFVAGDRRHP 516

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
              +I+ +L +++  +K R Y P T +VLHD+ ++EKE+ L  HSE+LA+A+GL+ + PG
Sbjct: 517 RSKDIYSMLEKMNGWLKERHYTPKTDAVLHDIGEQEKEQSLEVHSEKLALAFGLISTSPG 576

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             +++VKNLRVC DCH VMK++S+I+ R+I++RD  R+HHF++G CSC D+W
Sbjct: 577 AAIKIVKNLRVCLDCHAVMKIMSKISGRKIIMRDRNRFHHFENGSCSCRDYW 628



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 155/371 (41%), Gaps = 84/371 (22%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C  H      + +H+  IK GL  +  +   L+DAY +   V  A  L + MP+R  
Sbjct: 128 LKACTLH----PARAVHSHAIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSL 183

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALD------------------------------ 99
           VS+ ++LT Y +  +  +   +F  M   D                              
Sbjct: 184 VSYTAMLTCYAKHGMLPEARVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMM 243

Query: 100 -------KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK 152
                  K++P+     +++ +CG +GA   GK VH+    +    +  V ++LVDMY K
Sbjct: 244 MGGNGNGKVRPNEITVVAVLSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCK 303

Query: 153 CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ--------APVRNLFL 204
           CG   +AR VFD ++ K+ V+W +M+  Y   G   +A+++F +        + +  + +
Sbjct: 304 CGSLEDARKVFDVMEGKDVVAWNSMIMGYGIHGFSDEALQLFHEMCCIGVKPSDITFVAV 363

Query: 205 WTALV-SGLVQSRNEI-DAFYSFIEMR-------------------REGVDIV------- 236
            TA   +GLV    E+ D+      M                    +E  D+V       
Sbjct: 364 LTACAHAGLVSKGWEVFDSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEP 423

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC---LFISNAIVDMYAKCSDIIAAK 293
           DP++  +++ AC   + + LG++I  ++++ G  S    + +SN    MYA   + +   
Sbjct: 424 DPVLWGTLLWACRIHSNVSLGEEIAEILVSNGLASSGTYVLLSN----MYAAARNWVGVA 479

Query: 294 DIFGRMRRKDV 304
            +   M+   V
Sbjct: 480 KVRSMMKGSGV 490



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 72/162 (44%), Gaps = 6/162 (3%)

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           QIH  ++  G      ++  +   YA    +  +  +F R    +V  WT II   A   
Sbjct: 41  QIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTHIINAHAHFD 100

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
                L+ Y +M++  ++PN  T   L+ AC+    +   R +    I+ +G++  L   
Sbjct: 101 LFHHALSYYSQMLTHPIQPNAFTLSSLLKACT----LHPARAVHSHAIK-FGLSSHLYVS 155

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           T L+D  +R G +  A+ L  AMP E    ++ A+L+    H
Sbjct: 156 TGLVDAYARGGDVASAQKLFDAMP-ERSLVSYTAMLTCYAKH 196


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/592 (36%), Positives = 343/592 (57%), Gaps = 35/592 (5%)

Query: 23  KTLHAQIIKLGLHQYGPL-PNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           + LH   I+ GL    P   + L+  Y  C     A    +E+P  + V   ++ + Y +
Sbjct: 109 RQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYVR 168

Query: 82  ANLPQKTISIFSTMLALDKLQP-DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
            NL   ++++F  ++A       D         A   +    +   +HA  V +    D 
Sbjct: 169 NNLVYPSLALFRKLIASGSATAVDEAAALVAFSASARIPDCGITSSLHALVVKTGLDGDA 228

Query: 141 VVKSSLVDMYAKCGLPN--NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
            V ++++D YAK G  +   AR VFD+++ K+ VSW +M++ YA++G   DA+ ++ +  
Sbjct: 229 GVVNTMLDAYAKGGRRDLGAARKVFDTME-KDVVSWNSMIALYAQNGMSADALGLYRK-- 285

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
                     VSG ++                      + + LS+I+ ACA+   ++ GK
Sbjct: 286 -------MLNVSGSIK---------------------CNAVTLSAILLACAHAGTIQTGK 317

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
            IH  V+ +G E  +++  ++VDMY+KC  +  A+  F +++ K+++SW+++I G   HG
Sbjct: 318 CIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHG 377

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
             +E L +++EM  +G  PN +TF+ ++ ACSH GL+ KGR  + +M + +GI P ++HY
Sbjct: 378 HGQEALDIFNEMCRSGQNPNYITFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHY 437

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
            C++DLL R+G LDEA  LIK M  +PD   W ALLSAC+ H+N E+    A  L  L  
Sbjct: 438 GCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSACRIHKNVELAEISAKRLFELDA 497

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
            +   Y+LLSN+YA A MW+ V ++R L+    ++K PGYS +E    +H+FY G+ SHP
Sbjct: 498 TNCGYYVLLSNIYAEAGMWKDVERMRVLVKTRGIEKPPGYSSVELKGRTHLFYVGDKSHP 557

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
              EI+  L +L  +M+  GYVP+T SVLHD++++EK   L  HSE+LA+A+ L+ SVPG
Sbjct: 558 QHKEIYSYLGKLLEKMQEAGYVPNTGSVLHDLDEEEKASALHIHSEKLAIAFALMNSVPG 617

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +V+ V+KNLRVC DCH  +K+I++I +REI+VRD  R+HHFKDG CSC D+W
Sbjct: 618 SVIHVIKNLRVCTDCHTAIKLITKIAQREIIVRDLQRFHHFKDGSCSCGDYW 669



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 9/176 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA      T K +H Q++++GL +   +  +++D Y KC  V+ A    +++ +++ 
Sbjct: 304 LLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQKIKEKNI 363

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW++++T Y      Q+ + IF+ M    +  P++  F S++ AC   G    G+  + 
Sbjct: 364 LSWSAMITGYGMHGHGQEALDIFNEMCRSGQ-NPNYITFISVLAACSHAGLLDKGRYWYN 422

Query: 130 C----FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
                F + P  +       +VD+  + G  + A  +   +K+K ++  W A+LSA
Sbjct: 423 AMKKRFGIEPGVEH---YGCMVDLLGRAGCLDEAYGLIKEMKVKPDAAIWGALLSA 475


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 217/589 (36%), Positives = 355/589 (60%), Gaps = 3/589 (0%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           V  +HAQ+I+ G  Q   +   L+ +  KC  + YA  + +     +   + +++  +  
Sbjct: 65  VLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVS 124

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
           +      I ++S ML  D + PD+++ AS++KACGS  A R G++VH+  +      + +
Sbjct: 125 SGNYFDAIQLYSRMLH-DSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRL 183

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V+  ++++Y KCG   +AR VF+ +  ++ V+ T M+S+Y+  G  ++A  +F +   ++
Sbjct: 184 VRLRIMELYGKCGELGDARRVFEEMP-EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKD 242

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
              WTA++ G V++     A  +F  M+ E V   +   +  ++ AC+    LE+G+ +H
Sbjct: 243 TVCWTAMIDGFVRNEEMNRALEAFRGMQGENVR-PNEFTIVCVLSACSQLGALEIGRWVH 301

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             +     E  LF+ NA+++MY++C  I  A+ +F  M+ +DV+++ ++I G + +G++ 
Sbjct: 302 SYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSR 361

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           + + L+  M+   ++P  VTFVG++ ACSH GLV  G K+F SM  DYG+ P ++HY C+
Sbjct: 362 QAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCM 421

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL R G L+EA +LI+ M   PD      LLSACK H+N E+G +VA  L      D 
Sbjct: 422 VDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADS 481

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            +Y+LLS+VYAS+  W+  ++VR  M    ++KEPG S IE     H F  G+  HP K+
Sbjct: 482 GTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKE 541

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            I+E L EL+  ++  GY P+   VL D+E  EKE  L  HSERLA+ YGL+ + P TV+
Sbjct: 542 RIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVI 601

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           RV+KNLRVC DCH  +K+I++IT+R++VVRD  R+H+F++G CSC D+W
Sbjct: 602 RVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 650



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 133/317 (41%), Gaps = 67/317 (21%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--- 66
           L+ C         + +H++ +KLGL     +   +++ YGKC  +  A  + EEMP+   
Sbjct: 154 LKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVV 213

Query: 67  ---------------------------RDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
                                      +D V W +++  + +     + +  F  M   +
Sbjct: 214 ASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEEMNRALEAFRGMQG-E 272

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            ++P+ F    ++ AC  LGA  +G+ VH+         +  V ++L++MY++CG  + A
Sbjct: 273 NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEA 332

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE- 218
           + VFD +K ++ +++  M+S  + +G+ + A+E+F     R L        G++ + +  
Sbjct: 333 QTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHG 392

Query: 219 --ID-AFYSFIEMRR-------------------------EGVDIV-------DPLVLSS 243
             +D  F  F  M R                         E  D++       D ++L +
Sbjct: 393 GLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGT 452

Query: 244 IVGACANFAVLELGKQI 260
           ++ AC     LELG+Q+
Sbjct: 453 LLSACKMHKNLELGEQV 469


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/614 (37%), Positives = 345/614 (56%), Gaps = 43/614 (7%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL------VQYA 57
           S+  H L +  +      +K L A  IK  LH    +    I+    C L      +Q+A
Sbjct: 18  SNTTHPLSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINF---CSLNPTTTSMQHA 74

Query: 58  HHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGS 117
           HHL +++PQ D V + ++   Y + + P +  ++F+ +L    L PD + F SL+KAC S
Sbjct: 75  HHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQIL-FSGLFPDDYTFPSLLKACAS 133

Query: 118 LGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAM 177
             A   G+Q+H   +     ++  V  +L++MY  C   + AR VFD I     V++ AM
Sbjct: 134 CKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWEPCVVTYNAM 193

Query: 178 LSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD 237
           ++ YAR  R  +A+ +F +                +Q+RN          ++   V ++ 
Sbjct: 194 ITGYARGSRPNEALSLFRE----------------LQARN----------LKPTDVTML- 226

Query: 238 PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297
                S++ +CA    L+LGK +H  V   G+   + +  A++DMYAKC  +  A  +F 
Sbjct: 227 -----SVLSSCALLGALDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFE 281

Query: 298 RMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357
            M  +D  +W+++I+  A HG   + ++L+ EM  AG +P+E+TF+GL+YACSH GLV +
Sbjct: 282 NMAVRDTQAWSAMIMAYAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEE 341

Query: 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417
           G + F  M + YG+ P ++HY C++DLL R+G L+EA   I  +P  P    W  LLSAC
Sbjct: 342 GFEYFYGMRDKYGVIPGIKHYGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSAC 401

Query: 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPG 477
             H N E+G RV   +  L       YI+LSN+ A A  W+ V+ VRKLM+   V K PG
Sbjct: 402 GSHGNVELGKRVIEQIFELDDSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPG 461

Query: 478 YSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH-DMEQKEKE 536
            S +E     H F++G+  H +  ++ + L EL  E+K  GYVP+TS V H DME +EKE
Sbjct: 462 CSSVEVNNVVHEFFSGDGVHSVSTKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKE 521

Query: 537 RQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRY 596
             L +HSE+LA+ +GLL + PGT +RVVKNLRVCGDCH   K+IS I  R+I++RD  R+
Sbjct: 522 VTLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCGDCHSAAKLISLIFDRQIILRDVQRF 581

Query: 597 HHFKDGKCSCNDFW 610
           HHFKDGKCSC D+W
Sbjct: 582 HHFKDGKCSCEDYW 595


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 232/602 (38%), Positives = 338/602 (56%), Gaps = 34/602 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VCA+     T   +H  +IK GL     + N LI+ Y K   +  A  + ++M  RD 
Sbjct: 280 LPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDV 339

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW SI+ AY Q + P      F  M  L+ L+PD     SL          +  + VH 
Sbjct: 340 VSWNSIIAAYEQNDDPVTARGFFFKM-QLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHG 398

Query: 130 CFVLSPFCDDDVV-KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
             +   +  + VV  ++++DMYAK G+ ++A  VF+ I +K+ VSW  ++S Y ++G   
Sbjct: 399 FIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLAS 458

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A+E++                 +++   EI                ++     SI+ A 
Sbjct: 459 EAIEVYR----------------MMEECREIK---------------LNQGTWVSILAAY 487

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A+   L+ G +IHG +I       +F+   ++D+Y KC  ++ A  +F ++ R+  V W 
Sbjct: 488 AHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWN 547

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           +II     HG  E+ L L+ EM   GVKP+ VTF+ L+ ACSH GLV +G+  F  ++++
Sbjct: 548 AIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFH-LMQE 606

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YGI PSL+HY C++DLL R+G L+ A + IK MP  PD   W ALL AC+ H N E+G  
Sbjct: 607 YGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKF 666

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            ++ L  +  E+   Y+LLSN+YA+   W+ V KVR L     +KK PG+S IE  +   
Sbjct: 667 ASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVD 726

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
           IFY G  SHP   EI+  L  L A+MK  GY+PD S VL D+E+ EKE  L  HSERLA+
Sbjct: 727 IFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAI 786

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+G++ + P + +R+ KNLRVCGDCH   K ISRIT+REIVVRD+ R+HHFK+G CSC D
Sbjct: 787 AFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGD 846

Query: 609 FW 610
           +W
Sbjct: 847 YW 848



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 189/399 (47%), Gaps = 38/399 (9%)

Query: 19  ALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
            L  K LHA ++  G  Q   +   L++ Y     V  +    +++ ++D  +W S+++A
Sbjct: 89  TLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISA 148

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS-PFC 137
           Y +    ++ I  F  +L + K Q D + F  ++KAC +L     G+++H C+V    F 
Sbjct: 149 YVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVD---GRKIH-CWVFKLGFQ 204

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D  V +SL+ MY++ G    AR++FD +                               
Sbjct: 205 WDVFVAASLIHMYSRFGFVGIARSLFDDM------------------------------- 233

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P R++  W A++SGL+Q+ N   A     EMR EG+++ D + ++SI+  CA    +   
Sbjct: 234 PFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINM-DSVTVASILPVCAQLGDISTA 292

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
             IH  VI  G E  LF+SNA+++MYAK  ++  A+ +F +M  +DVVSW SII    Q+
Sbjct: 293 TLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQN 352

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
                    + +M   G++P+ +T V L    +        R +   ++    +  ++  
Sbjct: 353 DDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVI 412

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
              ++D+ ++ G +D A  +   +P + D  +W  L+S 
Sbjct: 413 GNAVMDMYAKLGVIDSAHKVFNLIPVK-DVVSWNTLISG 450



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 167/334 (50%), Gaps = 41/334 (12%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           F SL  +C     T L K++HA  V+S     + +   LV++YA  G  + +R  FD I+
Sbjct: 79  FNSLFDSCTK---TLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQ 135

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            K+  +W +M+SAY R+G  ++A++ F Q               L+ ++ + D FY+F  
Sbjct: 136 RKDVYTWNSMISAYVRNGHFREAIDCFYQL--------------LLVTKFQAD-FYTF-- 178

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
                     P VL     AC     L  G++IH  V  LG++  +F++ +++ MY++  
Sbjct: 179 ----------PPVLK----AC---QTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFG 221

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            +  A+ +F  M  +D+ SW ++I G  Q+G A + L + DEM   G+  + VT   ++ 
Sbjct: 222 FVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILP 281

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
            C+ +G +     +   +I+ +G+   L     L+++ ++ G+L +A+ + + M F  D 
Sbjct: 282 VCAQLGDISTATLIHLYVIK-HGLEFELFVSNALINMYAKFGNLGDAQKVFQQM-FLRDV 339

Query: 408 PTWAALLSACKHHRN--TEMGTRVANHLLSLKPE 439
            +W ++++A + + +  T  G      L  L+P+
Sbjct: 340 VSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPD 373


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/617 (36%), Positives = 351/617 (56%), Gaps = 64/617 (10%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA I KLG      +   LIDAY  C  V  A  + + +  +D VSW  ++T + + + 
Sbjct: 161 IHACIFKLGHESNAFVGTALIDAYSVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDC 220

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            ++ + +FS M  +   +P++F FAS+ KAC  L A  +GK VH C + S +  D  V  
Sbjct: 221 FKEALKLFSQMRMVG-FKPNNFTFASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGV 279

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +L+D+Y K                               SG   DA   FE+ P +++  
Sbjct: 280 ALLDLYTK-------------------------------SGDIDDARRAFEEIPKKDVIP 308

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W+ +++   QS    +A   F +MR+  V + +    +S++ ACA    L LG QIH  V
Sbjct: 309 WSFMIARYAQSDQSKEAVEMFFQMRQALV-LPNQFTFASVLQACATMEGLNLGNQIHCHV 367

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           I +G  S +F+SNA++D+YAKC  +  + ++F     ++ V+W ++IVG  Q G  E+ L
Sbjct: 368 IKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKAL 427

Query: 325 ALYDEMV-------------------------------SAGVKPNEVTFVGLIYACSHVG 353
            L+  M+                               S  VKP+++TFVG++ AC++ G
Sbjct: 428 RLFLNMLEYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANAG 487

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
           L+ +G+  F SMI+D+GI P ++HYTC++ LL R GHLD+A  LI  +PF+P    W AL
Sbjct: 488 LLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRAL 547

Query: 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473
           L AC  H + E+G   A  +L ++P+D ++++LLSN+YA+A  W +V+ VRK M    VK
Sbjct: 548 LGACVIHNDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVK 607

Query: 474 KEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQK 533
           KEPG S+IE     H F  G+TSHP    I  +L  L  + K+ GY+P+ + VL D+E +
Sbjct: 608 KEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIPNYNVVLLDVEDE 667

Query: 534 EKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDA 593
           EKER L+ HSERLA+++G++++  G+ +R++KNLR+C DCH  +K IS++ +REIVVRD 
Sbjct: 668 EKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCISKVVQREIVVRDI 727

Query: 594 TRYHHFKDGKCSCNDFW 610
            R+HHF++G CSC D+W
Sbjct: 728 NRFHHFQEGLCSCGDYW 744



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/413 (24%), Positives = 191/413 (46%), Gaps = 43/413 (10%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLP----NTLIDAYGKCDLVQYAHHLL 61
           Y + L+ C +       K LH +I+K G    G L     N L++ Y K D +  A  L 
Sbjct: 41  YANALQDCIQKDEPSRGKGLHCEILKRG----GCLDLFAWNILLNMYVKSDFLCDASKLF 96

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
           +EMP+R+ +S+ +++  Y ++    + I +F   L  +  + + FVF +++K   S    
Sbjct: 97  DEMPERNTISFVTLIQGYAESVRFLEAIELF-VRLHREGHELNPFVFTTILKLLVSTDCG 155

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
            LG  +HAC                               +F      N+   TA++ AY
Sbjct: 156 ELGWGIHAC-------------------------------IFKLGHESNAFVGTALIDAY 184

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
           +  GR   A E+F+    +++  WT +V+   ++    +A   F +MR  G    +    
Sbjct: 185 SVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFK-PNNFTF 243

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           +S+  AC      ++GK +HG  +   YE  L++  A++D+Y K  DI  A+  F  + +
Sbjct: 244 ASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARRAFEEIPK 303

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           KDV+ W+ +I   AQ  Q++E + ++ +M  A V PN+ TF  ++ AC+ +  +  G ++
Sbjct: 304 KDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQI 363

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
              +I+  G+   +     L+D+ ++ G ++ +  L    P   D  TW  ++
Sbjct: 364 HCHVIK-IGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRND-VTWNTVI 414



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 158/337 (46%), Gaps = 44/337 (13%)

Query: 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
           +W  +L+ Y +S    DA ++F++ P RN   +  L+ G  +S   ++A   F+ + REG
Sbjct: 75  AWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREG 134

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
            ++ +P V ++I+    +    ELG  IH  +  LG+ES  F+  A++D Y+ C  +  A
Sbjct: 135 HEL-NPFVFTTILKLLVSTDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVA 193

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
           +++F  +  KD+VSWT ++   A++   +E L L+ +M   G KPN  TF  +  AC  +
Sbjct: 194 REVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGL 253

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP---------- 402
                G+ +    ++       L     LLDL ++SG +D+A    + +P          
Sbjct: 254 EAFDVGKSVHGCALKSR-YELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFM 312

Query: 403 -----------------FE-------PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
                            F+       P++ T+A++L AC       +G ++  H++ +  
Sbjct: 313 IARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIG- 371

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKE 475
                  L S+V+ S A+    +K  ++ + ME+  E
Sbjct: 372 -------LHSDVFVSNALMDVYAKCGRMENSMELFAE 401



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 102/210 (48%), Gaps = 11/210 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA  +       +H  +IK+GLH    + N L+D Y KC  ++ +  L  E P R+ 
Sbjct: 348 LQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRND 407

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W +++  + Q    +K + +F  ML   ++Q     ++S ++AC SL A   G Q+H+
Sbjct: 408 VTWNTVIVGHVQLGDGEKALRLFLNMLEY-RVQATEVTYSSALRACASLAALEPGLQIHS 466

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-----WTAMLSAYARS 184
              + P   D +    ++   A  GL +  +A F S+   + +      +T M+    R 
Sbjct: 467 -LTVKP---DKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRG 522

Query: 185 GRKKDAMEIFEQAPVR-NLFLWTALVSGLV 213
           G    A+++ ++ P + ++ +W AL+   V
Sbjct: 523 GHLDKAVKLIDEIPFQPSVMVWRALLGACV 552


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/551 (39%), Positives = 322/551 (58%), Gaps = 33/551 (5%)

Query: 60  LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
           + E MP+RD VSW ++++   Q  + +  + +   M   D L+PD F  +S++       
Sbjct: 192 VFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNAD-LRPDSFTLSSVLPIFAEYV 250

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
               GK++H   + + +  D  + SSL+DMYAKC   +++  VF  +   + +SW ++++
Sbjct: 251 NLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIA 310

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
              ++G   + ++ F+Q  +  +              N +                    
Sbjct: 311 GCVQNGMFDEGLKFFQQMLIAKI------------KPNHVS------------------- 339

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
             SSI+ ACA+   L LGKQ+HG +I   ++  +FI++A+VDMYAKC +I  A+ IF +M
Sbjct: 340 -FSSIMPACAHLTTLHLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKM 398

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
              D+VSWT++I+G A HG A + ++L+  M   GVKPN V F+ ++ ACSH GLV +  
Sbjct: 399 ELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAW 458

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           K F SM +DY I P L+HY  + DLL R G L+EA   I  M  EP    W+ LL+AC+ 
Sbjct: 459 KYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRV 518

Query: 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
           H+N E+  +V+  L ++ P++  +Y+LLSN+Y++A  W+   K+R  M    +KK+P  S
Sbjct: 519 HKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACS 578

Query: 480 YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL 539
           +IE     H F AG+ SHP  D I E L  L  +M+R GYV DT+ VLHD+E+++K   L
Sbjct: 579 WIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGYVLDTTEVLHDVEEEQKRYLL 638

Query: 540 FWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
             HSERLA+ +G++ +  GT +RV KNLRVC DCH   K IS+I  REIVVRD +R+HHF
Sbjct: 639 CSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKFISKIVGREIVVRDNSRFHHF 698

Query: 600 KDGKCSCNDFW 610
           KDGKCSC DFW
Sbjct: 699 KDGKCSCGDFW 709



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 201/399 (50%), Gaps = 20/399 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPN---TLIDAYGKCDLVQYAHHLLEEMPQR-DHVSWASILTA 78
           K LHAQI++  L    P P+   T++  Y   +L+  +  +   +P     ++W SI+  
Sbjct: 25  KQLHAQILRTSL----PSPSLLSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRC 80

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
           Y    L   ++S F  MLA  K  PDH VF S++K+C  +   R G+ VH C +      
Sbjct: 81  YTSHGLFLHSLSFFIQMLASGKY-PDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGF 139

Query: 139 DDVVKSSLVDMYAK---CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
           D    ++L++MY+K       N  + VFD  K  +  S     S Y  S RK     +FE
Sbjct: 140 DLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRK-----VFE 194

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
             P R++  W  ++SG  Q+    DA     EM    +   D   LSS++   A +  L 
Sbjct: 195 MMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLR-PDSFTLSSVLPIFAEYVNLL 253

Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
            GK+IHG  I  GY++ +FI ++++DMYAKC+ +  +  +F  + + D +SW SII G  
Sbjct: 254 KGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCV 313

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
           Q+G  +E L  + +M+ A +KPN V+F  ++ AC+H+  +  G++L   +I       ++
Sbjct: 314 QNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRSR-FDGNV 372

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
              + L+D+ ++ G++  A  +   M    D  +W A++
Sbjct: 373 FIASALVDMYAKCGNIRTARWIFDKMELY-DMVSWTAMI 410



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 68/193 (35%), Positives = 105/193 (54%), Gaps = 1/193 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L + A +   L  K +H   I+ G      + ++LID Y KC  V  +  +   +PQ D 
Sbjct: 243 LPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDG 302

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW SI+    Q  +  + +  F  ML + K++P+H  F+S++ AC  L    LGKQ+H 
Sbjct: 303 ISWNSIIAGCVQNGMFDEGLKFFQQML-IAKIKPNHVSFSSIMPACAHLTTLHLGKQLHG 361

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + S F  +  + S+LVDMYAKCG    AR +FD ++L + VSWTAM+  YA  G   D
Sbjct: 362 YIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYD 421

Query: 190 AMEIFEQAPVRNL 202
           A+ +F++  V  +
Sbjct: 422 AISLFKRMEVEGV 434


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/588 (36%), Positives = 329/588 (55%), Gaps = 33/588 (5%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            K +H +I + GL     L N LI+ Y +C  +Q A ++   +  RD +SW +++      
Sbjct: 552  KQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQ 611

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                K I +F  M   +  +P    F+S++K C S      GK+V A  + S +  D  V
Sbjct: 612  GEDMKAIELFWQMQN-EGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYELDTGV 670

Query: 143  KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
             ++L+                               SAY++SG   DA E+F++ P R++
Sbjct: 671  GNALI-------------------------------SAYSKSGSMTDAREVFDKMPSRDI 699

Query: 203  FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
              W  +++G  Q+     A     +M+ + V + +     S++ AC++F+ LE GK++H 
Sbjct: 700  VSWNKIIAGYAQNGLGQTAVEFAYQMQEQDV-VPNKFSFVSLLNACSSFSALEEGKRVHA 758

Query: 263  LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             ++    +  + +  A++ MYAKC     A+++F  +  K+VV+W ++I   AQHG A +
Sbjct: 759  EIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASK 818

Query: 323  TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
             L  ++ M   G+KP+  TF  ++ AC+H GLV +G ++F SM  +YG+ P+++HY CL+
Sbjct: 819  ALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLV 878

Query: 383  DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
             LL R+    EAE LI  MPF PD   W  LL AC+ H N  +    AN+ L L   +P+
Sbjct: 879  GLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAANNALKLNARNPA 938

Query: 443  SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
             YILLSNVYA+A  W  V+K+R++M    ++KEPG S+IE     H F A + SHP   E
Sbjct: 939  VYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDNIIHEFIAADRSHPETAE 998

Query: 503  IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
            I+  L  L  EM+  GY PDT  VLHD+ +  +E  L  HSERLA+AYGL+K+ PGT +R
Sbjct: 999  IYAELKRLSVEMEEAGYFPDTQHVLHDLGKAHQETSLCTHSERLAIAYGLIKTPPGTPIR 1058

Query: 563  VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            + KNLR+CGDCH   K IS++  REI+ RD+ R+H FK+GKCSC D+W
Sbjct: 1059 IFKNLRICGDCHTASKFISKLVGREIIARDSNRFHSFKNGKCSCEDYW 1106



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 131/455 (28%), Positives = 214/455 (47%), Gaps = 43/455 (9%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP---LPNTLIDAYGKCDLVQYAHHLLE 62
           Y+  L+ C R ++    K +HAQ+++  +   GP   L N LI+ Y KC  V  AH + +
Sbjct: 30  YVALLQNCTRKRLLPEAKRIHAQMVEAWV---GPDIFLSNLLINMYVKCRSVLDAHQVFK 86

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
           EMP+RD +SW S+++ Y Q    +K   +F  M     + P+   + S++ AC S     
Sbjct: 87  EMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI-PNKITYISILTACYSPAELE 145

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
            GK++H+  + + +  D  V++SL+ MY KCG    AR VF  I  ++ VS+  ML  YA
Sbjct: 146 NGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYA 205

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           +    K+ + +F Q                               M  EG+   D +   
Sbjct: 206 QKAYVKECLGLFGQ-------------------------------MSSEGIS-PDKVTYI 233

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           +++ A    ++L+ GK+IH L +  G  S + +  A+V M  +C D+ +AK  F     +
Sbjct: 234 NLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGTADR 293

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           DVV + ++I   AQHG   E    Y  M S GV  N  T++ ++ ACS    +  G KL 
Sbjct: 294 DVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAG-KLI 352

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
            S I + G +  +Q    L+ + +R G L +A  L   MP + D  +W A+++      +
Sbjct: 353 HSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP-KRDLISWNAIIAGYARRED 411

Query: 423 TEMGTRVANHLLS--LKPEDPSSYILLSNVYASAA 455
                R+   + S  +KP   +   LLS    S+A
Sbjct: 412 RGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSA 446



 Score =  179 bits (453), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 118/441 (26%), Positives = 206/441 (46%), Gaps = 68/441 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H+QIIK G  +   + N+L+  YGKC  +  A  +   +  RD VS+ ++L  Y Q 
Sbjct: 148 KKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQK 207

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ + +F  M + + + PD   + +L+ A  +      GK++H   V      D  V
Sbjct: 208 AYVKECLGLFGQMSS-EGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRV 266

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LV M  +CG  ++A+                               + F+    R++
Sbjct: 267 GTALVTMCVRCGDVDSAK-------------------------------QAFKGTADRDV 295

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
            ++ AL++ L Q  + ++AF  +  MR +GV +     LS I+ AC+    LE GK IH 
Sbjct: 296 VVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLS-ILNACSTSKALEAGKLIHS 354

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +   G+ S + I NA++ MYA+C D+  A+++F  M ++D++SW +II G A+     E
Sbjct: 355 HISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGE 414

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + LY +M S GVKP  VTF+ L+ AC++      G+ + + ++   GI  +      L+
Sbjct: 415 AMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS-GIKSNGHLANALM 473

Query: 383 DLLSRSGHLDEAENLIKAM----------------------------------PFEPDEP 408
           ++  R G L EA+N+ +                                      EPD  
Sbjct: 474 NMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNI 533

Query: 409 TWAALLSACKHHRNTEMGTRV 429
           T+A++LS CK+    E+G ++
Sbjct: 534 TFASVLSGCKNPEALELGKQI 554



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 120/508 (23%), Positives = 231/508 (45%), Gaps = 47/508 (9%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           YL  L  C+  +     K +H+ I + G      + N LI  Y +C  +  A  L   MP
Sbjct: 333 YLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMP 392

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +RD +SW +I+  Y +     + + ++  M + + ++P    F  L+ AC +  A   GK
Sbjct: 393 KRDLISWNAIIAGYARREDRGEAMRLYKQMQS-EGVKPGRVTFLHLLSACANSSAYADGK 451

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            +H          +D+++S         G+ +N                 A+++ Y R G
Sbjct: 452 MIH----------EDILRS---------GIKSNGHLA------------NALMNMYRRCG 480

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
              +A  +FE    R++  W ++++G  Q  +   A+  F EM+ E ++  D +  +S++
Sbjct: 481 SLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELE-PDNITFASVL 539

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
             C N   LELGKQIHG +   G +  + + NA+++MY +C  +  A+++F  ++ +DV+
Sbjct: 540 SGCKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVM 599

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SWT++I G A  G+  + + L+ +M + G +P + TF  ++  C+    + +G+K+  + 
Sbjct: 600 SWTAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVI-AY 658

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
           I + G          L+   S+SG + +A  +   MP   D  +W  +++    +    +
Sbjct: 659 ILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMP-SRDIVSWNKIIAG---YAQNGL 714

Query: 426 GTRVANHLLSLKPED--PS--SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           G         ++ +D  P+  S++ L N  +S +  +   +V       E+ K      +
Sbjct: 715 GQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHA-----EIVKRKLQGDV 769

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTE 509
             G      YA   S     E+F+ + E
Sbjct: 770 RVGAALISMYAKCGSQGEAQEVFDNIIE 797



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 159/319 (49%), Gaps = 34/319 (10%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           + +   + +L++ C         K++HA  V +    D  + + L++MY KC    +A  
Sbjct: 24  ETERATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQ 83

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF  +  ++ +SW +++S YA+ G KK A ++FE                          
Sbjct: 84  VFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFE-------------------------- 117

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
                EM+  G  I + +   SI+ AC + A LE GK+IH  +I  GY+    + N+++ 
Sbjct: 118 -----EMQNAGF-IPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLS 171

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC D+  A+ +F  +  +DVVS+ +++   AQ    +E L L+ +M S G+ P++VT
Sbjct: 172 MYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVT 231

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           ++ L+ A +   ++ +G+++ K  +E+ G+   ++  T L+ +  R G +D A+   K  
Sbjct: 232 YINLLDAFTTPSMLDEGKRIHKLTVEE-GLNSDIRVGTALVTMCVRCGDVDSAKQAFKGT 290

Query: 402 PFEPDEPTWAALLSACKHH 420
             + D   + AL++A   H
Sbjct: 291 A-DRDVVVYNALIAALAQH 308



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/185 (36%), Positives = 94/185 (50%), Gaps = 1/185 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+VC         K + A I+  G      + N LI AY K   +  A  + ++MP RD 
Sbjct: 640 LKVCTSSACLDEGKKVIAYILNSGYELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDI 699

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW  I+  Y Q  L Q  +  F+  +    + P+ F F SL+ AC S  A   GK+VHA
Sbjct: 700 VSWNKIIAGYAQNGLGQTAVE-FAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHA 758

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V      D  V ++L+ MYAKCG    A+ VFD+I  KN V+W AM++AYA+ G    
Sbjct: 759 EIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASK 818

Query: 190 AMEIF 194
           A+  F
Sbjct: 819 ALGFF 823



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 1/122 (0%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L  C+        K +HA+I+K  L     +   LI  Y KC     A  + + + 
Sbjct: 737 FVSLLNACSSFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNII 796

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +++ V+W +++ AY Q  L  K +  F+ M   + ++PD   F S++ AC   G    G 
Sbjct: 797 EKNVVTWNAMINAYAQHGLASKALGFFNCM-EKEGIKPDGSTFTSILSACNHAGLVLEGY 855

Query: 126 QV 127
           Q+
Sbjct: 856 QI 857


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/601 (38%), Positives = 338/601 (56%), Gaps = 33/601 (5%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            LR C         + +H  +IK G      + + LID Y K   +  A  +L  +P+ D 
Sbjct: 470  LRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDV 529

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            VSW +++  Y Q ++  + + +F  M     +Q D+  FAS + AC  + A R G+Q+HA
Sbjct: 530  VSWTAMIAGYVQHDMFSEALQLFEEM-EYRGIQFDNIGFASAISACAGIRALRQGQQIHA 588

Query: 130  CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                + F  D  +              NNA                 ++S YAR GR ++
Sbjct: 589  QSYAAGFGADLSI--------------NNA-----------------LISLYARCGRIQE 617

Query: 190  AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            A   FE+   +N   W +LVSGL QS    +A   F+ M R   + V+     S + A A
Sbjct: 618  AYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAE-VNMFTYGSAISAAA 676

Query: 250  NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
            + A ++ G+QIH +V+  GY+S   +SN+++ +YAK   I  A   F  M  ++V+SW +
Sbjct: 677  SLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNA 736

Query: 310  IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
            +I G +QHG   E L L++EM   G+ PN VTFVG++ ACSH+GLV +G   F+SM + +
Sbjct: 737  MITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIH 796

Query: 370  GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
             + P  +HY C++DLL R+G LD A   IK MP   D   W  LLSAC  H+N E+G R 
Sbjct: 797  DLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERA 856

Query: 430  ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
            A+HLL L+PED ++Y+L+SN+YA +  W H    RKLM    VKKEPG S+IE     H 
Sbjct: 857  AHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDXGVKKEPGRSWIEVKNAVHA 916

Query: 490  FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
            FYAG+  HPL ++I+E +  L+      GYV D+ S+L++ EQ +K+     HSE+LA+A
Sbjct: 917  FYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIA 976

Query: 550  YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
            +GLL       +RV+KNLRVC DCH  +K +S+I+ R I+VRDA R+HHF  G CSC DF
Sbjct: 977  FGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDF 1036

Query: 610  W 610
            W
Sbjct: 1037 W 1037



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 195/418 (46%), Gaps = 37/418 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH  +IK G H    + N L+  Y +   +  A  +   M  RD VS+ S+++   Q 
Sbjct: 281 EQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQ 340

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + +F+ M   D L+PD    ASL+ AC S+GA   G Q+H+  + +    D ++
Sbjct: 341 GFSDRALELFTKM-QRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIIL 399

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           + SL+D+Y+KC                                  + A + F      N+
Sbjct: 400 EGSLLDLYSKCA-------------------------------DVETAHKFFLXTETENI 428

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
            LW  ++    Q  N  D+F  F +M+ EG+ I +     SI+  C +   L LG+QIH 
Sbjct: 429 VLWNVMLVAYGQLDNLSDSFEIFRQMQMEGM-IPNQFTYPSILRTCTSLGALYLGEQIHT 487

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            VI  G++  +++ + ++DMYAK   +  A  I  R+   DVVSWT++I G  QH    E
Sbjct: 488 HVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSE 547

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF-KSMIEDYGITPSLQHYTCL 381
            L L++EM   G++ + + F   I AC+ +  + +G+++  +S    +G   S+ +   L
Sbjct: 548 ALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINN--AL 605

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           + L +R G + EA    + +  + +  +W +L+S        E   +V   +L  + E
Sbjct: 606 ISLYARCGRIQEAYLAFEKIG-DKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 132/543 (24%), Positives = 234/543 (43%), Gaps = 82/543 (15%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           +YL  L  C           LH +I K G      L ++L+D Y +      A  + +E 
Sbjct: 60  NYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDEN 119

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC-GSLGATRL 123
             R   SW  ++  +       +   +F  MLA + + P+ + FA ++KAC G   A   
Sbjct: 120 SNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLA-EGITPNGYTFAGVLKACVGGDIAFNY 178

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
            KQVH+      F    +V + L+D+Y+K G                          Y  
Sbjct: 179 VKQVHSRTFYYGFDSSPLVANLLIDLYSKNG--------------------------YIE 212

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           S +K     +F    ++++  W A++SGL Q+  E +A   F +M    +    P VLSS
Sbjct: 213 SAKK-----VFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEI-FPTPYVLSS 266

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++ A     + ELG+Q+H LVI  G+ S  ++ N +V +Y++   +I+A+ IF  M  +D
Sbjct: 267 VLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRD 326

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
            VS+ S+I G  Q G ++  L L+ +M    +KP+ +T   L+ AC+ VG + KG +L  
Sbjct: 327 GVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHS 386

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLD---------EAENLI---------------- 398
             I+  G++  +     LLDL S+   ++         E EN++                
Sbjct: 387 HAIKA-GMSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLS 445

Query: 399 ------KAMPFE---PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSN 449
                 + M  E   P++ T+ ++L  C       +G ++  H++       + + L  N
Sbjct: 446 DSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI------KTGFQL--N 497

Query: 450 VYASAAMWQHVSKVRKLMSVMEV-KKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLT 508
           VY  + +    +K  +L   + + ++ P    + +        AG   H +  E  +L  
Sbjct: 498 VYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTA----MIAGYVQHDMFSEALQLFE 553

Query: 509 ELD 511
           E++
Sbjct: 554 EME 556


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 229/638 (35%), Positives = 350/638 (54%), Gaps = 70/638 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLG--LHQY------------GPLPNT------------ 43
           L+ CA+ +     + +HAQ++KLG  L +Y            G L +             
Sbjct: 71  LKSCAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDV 130

Query: 44  -----LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                LI  Y      + A  + +E+ +RD VSW +++T Y +    ++ + +F  M+  
Sbjct: 131 VSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRT 190

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP----FCDDDVVKSSLVDMYAKCG 154
           + ++PD     S+V AC   G+  LG+QVH+          F     + ++L+D+Y+KCG
Sbjct: 191 N-VRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCG 249

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
                                            + A  +FE    +++  W  L+ G   
Sbjct: 250 -------------------------------DVETAFGLFEGLSCKDVVSWNTLIGGYTH 278

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL--GYESC 272
           +    +A   F EM R G +  + + L S++ ACA+   +++G+ IH  +     G  + 
Sbjct: 279 TNLYKEALLLFQEMLRSG-ECPNDVTLLSVLPACAHLGAIDIGRWIHVYIDKKLKGVTNE 337

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
             +  +++DMYAKC DI AA  +F  M  + + SW ++I G A HG+A     L+  M  
Sbjct: 338 TSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNAMIFGFAMHGRANAAFDLFSRMRG 397

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
             V+P+++TFVGL+ ACSH GL+  GR++FKSM +DY +TP L+HY C++DLL  SG   
Sbjct: 398 NRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLFK 457

Query: 393 EAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           EAE +I  MP EPD   W +LL ACK H N E+    A  L+ ++PE+  SY+LLSN+YA
Sbjct: 458 EAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESFAQKLIKIEPENSGSYVLLSNIYA 517

Query: 453 SAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDA 512
           +A  W+ V++VR +++   +KK PG S IE     H F  G+  HP + EI+ +L E+D 
Sbjct: 518 TAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDSVVHEFIIGDKLHPRRREIYHMLEEMDV 577

Query: 513 EMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGD 572
           +++  G+ PDTS VL +ME++ KE  L  HSE+LA+A+GL+ + PGT L +VKNLRVC +
Sbjct: 578 QLEEAGFAPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRN 637

Query: 573 CHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           CH   K+IS+I KREIV RD TR+HHF+DG CSC D+W
Sbjct: 638 CHEATKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 675



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 125/418 (29%), Positives = 214/418 (51%), Gaps = 43/418 (10%)

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
           D + YA  + E + + + + W ++L  +  ++ P   + ++  M++L  L P+ + F  L
Sbjct: 12  DGLPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHL-PNSYSFPFL 70

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCD-DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN 170
           +K+C    A   G+Q+HA  VL   C  D  V +SL+ MYA+ G   +AR VFD+   ++
Sbjct: 71  LKSCAKSKAFEEGRQIHA-QVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRD 129

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
            VS TA+++ YA  G  + A ++F++   R++  W A+++G V++    +A   F EM R
Sbjct: 130 VVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMR 189

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL----GYESCLFISNAIVDMYAKC 286
             V   D   L S+V ACA    +ELG+Q+H  V       G+ S L I NA++D+Y+KC
Sbjct: 190 TNVR-PDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKC 248

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
            D+  A  +F  +  KDVVSW ++I G       +E L L+ EM+ +G  PN+VT + ++
Sbjct: 249 GDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVL 308

Query: 347 YACSHVGLVGKGRKLFKSMIEDY-GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF-- 403
            AC+H+G +  GR +   + +   G+T      T L+D+ ++ G ++ A  +  +M +  
Sbjct: 309 PACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRS 368

Query: 404 --------------------------------EPDEPTWAALLSACKHHRNTEMGTRV 429
                                           EPD+ T+  LLSAC H    ++G ++
Sbjct: 369 LSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQI 426



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 145/321 (45%), Gaps = 44/321 (13%)

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +FE     NL +W  ++ G   S + + A   ++ M   G  + +      ++ +CA
Sbjct: 17  AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLG-HLPNSYSFPFLLKSCA 75

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK---------------------CSD 288
                E G+QIH  V+ LG     ++  +++ MYA+                     C+ 
Sbjct: 76  KSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTA 135

Query: 289 II----------AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           +I          +A+ +F  +  +DVVSW ++I G  ++G+ EE L L+ EM+   V+P+
Sbjct: 136 LITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPD 195

Query: 339 EVTFVGLIYACSHVGLVGKGRKL---FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
           E T V ++ AC+  G +  GR++        +D+G + SL+    L+DL S+ G ++ A 
Sbjct: 196 EGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAF 255

Query: 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
            L + +  + D  +W  L+    H    +    +   +L    E P+   LLS + A A 
Sbjct: 256 GLFEGLSCK-DVVSWNTLIGGYTHTNLYKEALLLFQEMLR-SGECPNDVTLLSVLPACAH 313

Query: 456 M-------WQHVSKVRKLMSV 469
           +       W HV   +KL  V
Sbjct: 314 LGAIDIGRWIHVYIDKKLKGV 334


>gi|302820671|ref|XP_002992002.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
 gi|300140244|gb|EFJ06970.1| hypothetical protein SELMODRAFT_134463 [Selaginella moellendorffii]
          Length = 620

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 239/622 (38%), Positives = 350/622 (56%), Gaps = 65/622 (10%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKC----------------DLVQY---------- 56
           + +H+ ++  GL     + N+L++ YGKC                D+V +          
Sbjct: 30  RQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQN 89

Query: 57  -----AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
                A H+ E MP++D VSW +++ A    +  Q  + +F  M  L+ L+ + F   SL
Sbjct: 90  GCWSQALHVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGM-ELEGLRSNEFTLLSL 148

Query: 112 VKACGSLGATRLGKQVHACFVLSPFC-DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN 170
           ++ACG L   +L +Q+HA      F  +   V +S+V+MYA+CG   + +  FDS++ K 
Sbjct: 149 LEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDTKKAFDSLEEKG 208

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
            V+W+ ML+AYA+S   KD                    SG         AF  F EM  
Sbjct: 209 LVAWSIMLAAYAQS---KDG-------------------SGR-------RAFKFFQEMEA 239

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY-ESCLFISNAIVDMYAKCSDI 289
           EG+   +   +S++  ACA  A LE G+ +H    A G+ E+ L + N I++MY KC   
Sbjct: 240 EGIKPGEVTFVSAL-DACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSP 298

Query: 290 IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349
             AK +F +M  K ++SW S+IV  A +G A E L+   EM+  G  P+  T V ++Y  
Sbjct: 299 SDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFDPDSGTSVSILYGL 358

Query: 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF-EPDEP 408
           SH GL+ +G + F+S I+D+G+ PS     CL+DLL+R G LD AE LI A P  + D  
Sbjct: 359 SHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEELILASPACQADTI 418

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
            W  LL+ACK + + + G R A  +  L+P+   S+++L+N+YAS   W   S++RK+M 
Sbjct: 419 AWMTLLAACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVGRWSDASRIRKMME 478

Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH 528
            M VKKEPG S+IE     H F +GE+ HP   EI E L +L   M+  GYVPDT++V+H
Sbjct: 479 RMSVKKEPGCSWIELSGSVHEFISGESKHPKIREICEELEKLTLRMREAGYVPDTTNVVH 538

Query: 529 DMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREI 588
           D+E+ +KE  L  HSERLA+ +GL+ + PG  +RVVKNLRVC DCH   K+IS +  REI
Sbjct: 539 DVEEGDKEEILSRHSERLAIVFGLMSTRPGETIRVVKNLRVCSDCHAATKIISSVVGREI 598

Query: 589 VVRDATRYHHFKDGKCSCNDFW 610
           VVRD++R+HHFK G+CSC DFW
Sbjct: 599 VVRDSSRFHHFKHGQCSCGDFW 620



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 174/354 (49%), Gaps = 6/354 (1%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PD  VF   + AC + G    G+Q+H+  V S    + ++ +SLV+MY KC     A  
Sbjct: 7   RPDKVVFVIALDACAASGELDHGRQIHSSVVDSGLTSNIIISNSLVNMYGKCQDVPCAEK 66

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VFD + L++ VSWTAML+ YA++G    A+ +FE  P ++   W A+++  V +    DA
Sbjct: 67  VFDGMLLRDVVSWTAMLAVYAQNGCWSQALHVFEAMPRKDDVSWNAVINASVGNSKFQDA 126

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH-GLVIALGYESCLFISNAIV 280
              F  M  EG+   +   L S++ AC     L+L +QIH          +   + N++V
Sbjct: 127 LELFHGMELEGLR-SNEFTLLSLLEACGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVV 185

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH--GQAEETLALYDEMVSAGVKPN 338
           +MYA+C  ++  K  F  +  K +V+W+ ++   AQ   G        + EM + G+KP 
Sbjct: 186 NMYARCGSLLDTKKAFDSLEEKGLVAWSIMLAAYAQSKDGSGRRAFKFFQEMEAEGIKPG 245

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           EVTFV  + AC+ +  +  GR + +       +  SL     ++++  + G   +A+ + 
Sbjct: 246 EVTFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVF 305

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
             MP E    +W +L+ A  H+ +          +L L+  DP S   +S +Y 
Sbjct: 306 DQMP-EKCLISWNSLIVAYAHNGHALEALSSLQEML-LQGFDPDSGTSVSILYG 357


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Cucumis sativus]
          Length = 1037

 Score =  425 bits (1093), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 234/601 (38%), Positives = 338/601 (56%), Gaps = 33/601 (5%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            LR C         + +H  +IK G      + + LID Y K   +  A  +L  +P+ D 
Sbjct: 470  LRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDV 529

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            VSW +++  Y Q ++  + + +F  M     +Q D+  FAS + AC  + A R G+Q+HA
Sbjct: 530  VSWTAMIAGYVQHDMFSEALQLFEEM-EYRGIQFDNIGFASAISACAGIRALRQGQQIHA 588

Query: 130  CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                + F  D  +              NNA                 ++S YAR GR ++
Sbjct: 589  QSYAAGFGADLSI--------------NNA-----------------LISLYARCGRIQE 617

Query: 190  AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            A   FE+   +N   W +LVSGL QS    +A   F+ M R   + V+     S + A A
Sbjct: 618  AYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAE-VNMFTYGSAISAAA 676

Query: 250  NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
            + A ++ G+QIH +V+  GY+S   +SN+++ +YAK   I  A   F  M  ++V+SW +
Sbjct: 677  SLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNA 736

Query: 310  IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
            +I G +QHG   E L L++EM   G+ PN VTFVG++ ACSH+GLV +G   F+SM + +
Sbjct: 737  MITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIH 796

Query: 370  GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
             + P  +HY C++DLL R+G LD A   IK MP   D   W  LLSAC  H+N E+G R 
Sbjct: 797  DLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERA 856

Query: 430  ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
            A+HLL L+PED ++Y+L+SN+YA +  W H    RKLM    VKKEPG S+IE     H 
Sbjct: 857  AHHLLELEPEDSATYVLISNIYAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAVHA 916

Query: 490  FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
            FYAG+  HPL ++I+E +  L+      GYV D+ S+L++ EQ +K+     HSE+LA+A
Sbjct: 917  FYAGDKLHPLTNQIYEYIGHLNRRTSEIGYVQDSFSLLNESEQGQKDPITHVHSEKLAIA 976

Query: 550  YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
            +GLL       +RV+KNLRVC DCH  +K +S+I+ R I+VRDA R+HHF  G CSC DF
Sbjct: 977  FGLLSLGNNIPIRVMKNLRVCNDCHNWIKYVSKISNRSIIVRDAHRFHHFDGGVCSCKDF 1036

Query: 610  W 610
            W
Sbjct: 1037 W 1037



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 112/418 (26%), Positives = 195/418 (46%), Gaps = 37/418 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH  +IK G H    + N L+  Y +   +  A  +   M  RD VS+ S+++   Q 
Sbjct: 281 EQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQ 340

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + +F+ M   D L+PD    ASL+ AC S+GA   G Q+H+  + +    D ++
Sbjct: 341 GFSDRALELFTKM-QRDCLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIIL 399

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           + SL+D+Y+KC                                  + A + F      N+
Sbjct: 400 EGSLLDLYSKCA-------------------------------DVETAHKFFLTTETENI 428

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
            LW  ++    Q  N  D+F  F +M+ EG+ I +     SI+  C +   L LG+QIH 
Sbjct: 429 VLWNVMLVAYGQLDNLSDSFEIFRQMQMEGM-IPNQFTYPSILRTCTSLGALYLGEQIHT 487

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            VI  G++  +++ + ++DMYAK   +  A  I  R+   DVVSWT++I G  QH    E
Sbjct: 488 HVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSE 547

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF-KSMIEDYGITPSLQHYTCL 381
            L L++EM   G++ + + F   I AC+ +  + +G+++  +S    +G   S+ +   L
Sbjct: 548 ALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGFGADLSINN--AL 605

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           + L +R G + EA    + +  + +  +W +L+S        E   +V   +L  + E
Sbjct: 606 ISLYARCGRIQEAYLAFEKIG-DKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAE 662



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 132/543 (24%), Positives = 235/543 (43%), Gaps = 82/543 (15%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           +YL  L  C           LH +I K G      L ++L+D Y +      A  + +E 
Sbjct: 60  NYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDEN 119

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC-GSLGATRL 123
             R   SW  ++  +       +   +F  MLA + + P+ + FA ++KAC G   A   
Sbjct: 120 SNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLA-EGITPNGYTFAGVLKACVGGDIAFNY 178

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
            KQVH+      F    +V + L+D+Y+K G   +A+ VF+ I +               
Sbjct: 179 VKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICM--------------- 223

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
                           +++  W A++SGL Q+  E +A   F +M    +    P VLSS
Sbjct: 224 ----------------KDIVTWVAMISGLSQNGLEEEAILLFCDMHASEI-FPTPYVLSS 266

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++ A     + ELG+Q+H LVI  G+ S  ++ N +V +Y++   +I+A+ IF  M  +D
Sbjct: 267 VLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRD 326

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
            VS+ S+I G  Q G ++  L L+ +M    +KP+ +T   L+ AC+ VG + KG +L  
Sbjct: 327 GVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKGMQLHS 386

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLD---------EAENLI---------------- 398
             I+  G++  +     LLDL S+   ++         E EN++                
Sbjct: 387 HAIKA-GMSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLS 445

Query: 399 ------KAMPFE---PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSN 449
                 + M  E   P++ T+ ++L  C       +G ++  H++       + + L  N
Sbjct: 446 DSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVI------KTGFQL--N 497

Query: 450 VYASAAMWQHVSKVRKLMSVMEV-KKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLT 508
           VY  + +    +K  +L   + + ++ P    + +        AG   H +  E  +L  
Sbjct: 498 VYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTA----MIAGYVQHDMFSEALQLFE 553

Query: 509 ELD 511
           E++
Sbjct: 554 EME 556


>gi|242041629|ref|XP_002468209.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
 gi|241922063|gb|EER95207.1| hypothetical protein SORBIDRAFT_01g041740 [Sorghum bicolor]
          Length = 635

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/577 (36%), Positives = 344/577 (59%), Gaps = 45/577 (7%)

Query: 42  NTLIDAYGKCDL-VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDK 100
           NTL+ A G+    +  A  L + MP+RDH SW++I++A+ +   P+  ++I+  ML    
Sbjct: 96  NTLVAALGRSPRGLASARALFDRMPRRDHFSWSAIVSAHARHGQPRAALAIYRRMLR--- 152

Query: 101 LQP------DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
            +P      + F  +S + A  +    R G+++H C V+    D D              
Sbjct: 153 -EPGSAGVDNEFTASSALAAATAARCARAGRELH-CHVVRRGIDAD-------------- 196

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
                           +V W+A+   YA+ GR  DA  +F++ PVR++  WTA+V     
Sbjct: 197 ----------------AVVWSALADMYAKCGRVDDARSVFDRMPVRDVVSWTAMVERYFD 240

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG-LVIALGYESCL 273
           +R + + F  F+ M R G+   +    + ++ ACA F   +LGKQ+HG +  +   +SC 
Sbjct: 241 ARRDGEGFRLFVRMLRSGIQ-PNEFTYAGVLRACAEFTSEKLGKQVHGRMTKSRAGDSC- 298

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
           F  +A+V MY+K  D+  A  +F  M + D+VSWT++I G AQ+GQ +E L  +D ++ +
Sbjct: 299 FAESALVHMYSKYGDMGTAVRVFRGMPKLDLVSWTAMISGYAQNGQPDEALRYFDMLLRS 358

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
           G +P+ VTFVG++ AC+H GLV KG  +F S+ ++YGI  +  HY C++DLLSRSG  + 
Sbjct: 359 GCRPDHVTFVGVLSACAHAGLVDKGLSIFHSIKDEYGIEHTADHYACVIDLLSRSGLFER 418

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453
           AE +I  M  +P++  WA+LL  C+ H+N  +    A  L  ++PE+P++Y+ L+N+YAS
Sbjct: 419 AEEMINTMSVKPNKFLWASLLGGCRIHKNVRLARWAAEALFEIEPENPATYVTLANIYAS 478

Query: 454 AAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAE 513
             ++  V   R++M +  + K P  S+IE G   H+F  G+  HP  ++++ LL +L  +
Sbjct: 479 VGLFDEVENTRRIMELKGITKMPASSWIEVGTRMHVFLVGDKLHPQAEQVYALLKKLYVK 538

Query: 514 MKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDC 573
           M+  GYV DT  VLHD+E ++K++ + +HSERLAVA+G++ +  G  ++V KNLR+CGDC
Sbjct: 539 MREEGYVADTGFVLHDVEDEQKQQDIGYHSERLAVAFGIIATPKGAPIKVFKNLRICGDC 598

Query: 574 HIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           H  +K+IS+I +REI+VRD+ R+HHFK+G CSC D+W
Sbjct: 599 HTTIKLISKIVQREIIVRDSNRFHHFKNGSCSCRDYW 635


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/569 (37%), Positives = 330/569 (57%), Gaps = 35/569 (6%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           LI  Y     +  A  + +E+P +D VSW ++++ Y +    ++ + +F  M+  + ++P
Sbjct: 160 LITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTN-VRP 218

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D     S+V AC    +  LG+QVH+      F  +  + ++L+D+Y KCG    A  +F
Sbjct: 219 DESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLF 278

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           + +  K+ +SW  ++  Y      K+A+ +F+                            
Sbjct: 279 EGLSYKDVISWNTLIGGYTHMNLYKEALLLFQ---------------------------- 310

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL--GYESCLFISNAIVD 281
              EM R G    D  +LS I+ ACA+   +E+G+ IH  +     G  +      +++D
Sbjct: 311 ---EMLRSGESPNDVTMLS-ILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLID 366

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MYAKC DI AA+ +F  +  + + SW ++I G A HG+A     ++  M    ++P+++T
Sbjct: 367 MYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDIT 426

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           FVGL+ ACSH G++  GR +F+SM EDY ITP L+HY C++DLL  SG   EAE +I  M
Sbjct: 427 FVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTM 486

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
             EPD   W +LL ACK H N E+G   A +L+ ++P++P SY+LLSN+YA+A  W  V+
Sbjct: 487 EMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVA 546

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           K+R L++   +KK PG S IE     H F  G+  HP   EI+ +L E++  ++  G+VP
Sbjct: 547 KIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVP 606

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           DTS VL +ME++ KE  L  HSE+LA+A+GL+ + PGT L +VKNLRVC +CH   K+IS
Sbjct: 607 DTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLIS 666

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I KREI+ RD TR+HHF+DG CSCND+W
Sbjct: 667 KIYKREIIARDRTRFHHFRDGVCSCNDYW 695



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 230/447 (51%), Gaps = 40/447 (8%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLID---AYGKCDLVQYAHHLLEEMPQRDHVSWASILT 77
           +++ +HAQ+IK GLH      + LI+        D + YA  + E + + + + W ++  
Sbjct: 2   SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 61

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
            +  ++ P   + ++  M++L  L P+ + F  L+K+C    A R G+Q+H   +   + 
Sbjct: 62  GHALSSDPVSALYLYVCMISLG-LLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYD 120

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D  V +SL+ MY + G   +AR VFD    ++ VS+TA+++ YA  G    A ++F++ 
Sbjct: 121 LDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEI 180

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P++++  W A++SG  ++ N  +A   F EM +  V   D   + S+V ACA  A +ELG
Sbjct: 181 PIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR-PDESTMVSVVSACAQSASIELG 239

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           +Q+H  +   G+ S L I NA++D+Y KC ++  A  +F  +  KDV+SW ++I G    
Sbjct: 240 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHM 299

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY-GITPSLQ 376
              +E L L+ EM+ +G  PN+VT + ++ AC+H+G +  GR +   + +   G+  +  
Sbjct: 300 NLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASS 359

Query: 377 HYTCLLDLLSRSGHLDEAENLI-----------KAMPF---------------------- 403
           H T L+D+ ++ G ++ A+ +             AM F                      
Sbjct: 360 HRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNE 419

Query: 404 -EPDEPTWAALLSACKHHRNTEMGTRV 429
            EPD+ T+  LLSAC H    ++G  +
Sbjct: 420 IEPDDITFVGLLSACSHSGMLDLGRHI 446



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 148/349 (42%), Gaps = 50/349 (14%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA+       + +H+ I   G      + N LID Y KC  V+ A  L E +  +D +SW
Sbjct: 230 CAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISW 289

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF- 131
            +++  Y   NL ++ + +F  ML   +  P+     S++ AC  LGA  +G+ +H    
Sbjct: 290 NTLIGGYTHMNLYKEALLLFQEMLRSGE-SPNDVTMLSILPACAHLGAIEIGRWIHVYIN 348

Query: 132 -VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
             L    +    ++SL+DMYAKCG    A+ VFDSI  ++  SW AM+  +A  GR   A
Sbjct: 349 KRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAA 408

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
            +IF +                   +NEI+                D +    ++ AC++
Sbjct: 409 FDIFSR-----------------MRKNEIEP---------------DDITFVGLLSACSH 436

Query: 251 FAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK- 302
             +L+LG+ I       + +   L +  C+      +D+         A+++   M  + 
Sbjct: 437 SGMLDLGRHIFRSMKEDYKITPKLEHYGCM------IDLLGHSGLFKEAEEMINTMEMEP 490

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK-PNEVTFVGLIYACS 350
           D V W S++     HG  E   +    ++    K P     +  IYA +
Sbjct: 491 DGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATA 539


>gi|359484088|ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 762

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 248/664 (37%), Positives = 346/664 (52%), Gaps = 88/664 (13%)

Query: 22  VKTLHAQIIKLGLHQYGPL------------PNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +K +HAQII    H   P             P     AY K       HHL    P    
Sbjct: 112 LKQVHAQIIT---HHNSPFQLSALASLSALSPFPTFLAYAKTIF----HHLQNPPPSL-- 162

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
             + S++ A + +  P + + ++ TML    L+PDH  +  ++KAC     T  G  VH 
Sbjct: 163 --YNSLIRALSSSKTPLEALPLYHTMLQ-SGLKPDHMTYPFVIKACNESSVTWFGLLVHT 219

Query: 130 CFVLSPF-CDDDVVKS------------------------------SLVDMYAKCGLPNN 158
             V S F CD  +V S                              +++D Y K     +
Sbjct: 220 HVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSARDVVSWNAMIDGYVKHVEMGH 279

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           AR VFD +  ++ +SW  M++ YA  G+  +A  +F++ P RNL  W ++++G V+  N 
Sbjct: 280 ARMVFDRMVCRDVISWNTMINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLAGFVKCGNV 339

Query: 219 IDAFYSFIEM-------------------------------RREGVDIVDPLVLSSIVGA 247
            DAF  F EM                               R  GV   +  V+S ++ A
Sbjct: 340 EDAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVS-LLSA 398

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
           CA+   L+ G  +H  +     E    +  A+VDMYAKC  I  A  +F  M  KDV++W
Sbjct: 399 CAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVLAW 458

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            +II G A HG  +E   L+ EM  AGV+PN++TFV ++ ACSH G+V +G+KL   M  
Sbjct: 459 NTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACSHAGMVDEGQKLLDCMSS 518

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
            YGI P ++HY C++DLL+R+G L+EA  LI  MP EP+     ALL  C+ H N E+G 
Sbjct: 519 SYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFELGE 578

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
            V   L++L+P     YILLSN+YA+A  W    KVR LM V  + K PG S IE     
Sbjct: 579 MVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKGMV 638

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRR-GYVPDTSSVLHDMEQKEKERQLFWHSERL 546
           H F AG+ SHP  ++I+E L E+   +K   GY  DT +VL DME+++KE  L  HSE+L
Sbjct: 639 HRFVAGDWSHPESNKIYEKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSEKL 698

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+AYGLL       +R+VKNLRVC DCH V+K+IS++  REI+VRD  R+HHF+DG+CSC
Sbjct: 699 AIAYGLLHLDSKEAIRIVKNLRVCRDCHHVIKLISKVYGREIIVRDRNRFHHFEDGECSC 758

Query: 607 NDFW 610
            DFW
Sbjct: 759 LDFW 762


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/602 (37%), Positives = 335/602 (55%), Gaps = 34/602 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C   +     K ++  ++K G      + N LID Y KC  +  A  +   M  +D 
Sbjct: 314 LRACGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDT 373

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW SI++ Y Q+    + + +F  M+ +++ Q DH  +  L+     L   + GK +H+
Sbjct: 374 VSWNSIISGYIQSGDLMEAMKLFKMMMIMEE-QADHITYLMLISVSTRLADLKFGKGLHS 432

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + S  C D  V ++L+DMYAKC                               G   D
Sbjct: 433 NGIKSGICIDLSVSNALIDMYAKC-------------------------------GEVGD 461

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           +++IF      +   W  ++S  V+  +         +MR+  V + D       +  CA
Sbjct: 462 SLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEV-VPDMATFLVTLPMCA 520

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           + A   LGK+IH  ++  GYES L I NA+++MY+KC  +  +  +F RM R+DVV+WT 
Sbjct: 521 SLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTG 580

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I     +G+ E+ L  + +M  +G+ P+ V F+ +IYACSH GLV +G   F+ M   Y
Sbjct: 581 MIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFEKMKTHY 640

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            I P ++HY C++DLLSRS  + +AE  I+AMP +PD   WA++L AC+   + E   RV
Sbjct: 641 KIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDMETAERV 700

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           +  ++ L P+DP   IL SN YA+   W  VS +RK +    + K PGYS+IE GK  H+
Sbjct: 701 SRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHV 760

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLF-WHSERLAV 548
           F +G+ S P  + I++ L  L + M + GY+PD   V  ++E++E++R+L   HSERLA+
Sbjct: 761 FSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAI 820

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+GLL + PGT L+V+KNLRVCGDCH V K+IS+I  REI+VRDA R+H FKDG CSC D
Sbjct: 821 AFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKD 880

Query: 609 FW 610
            W
Sbjct: 881 RW 882



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/426 (26%), Positives = 202/426 (47%), Gaps = 40/426 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ CA    A     ++ QI+ +G      + N L+D Y +  L+  A  + +EMP RD 
Sbjct: 113 IKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDL 172

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S+++ Y+     ++ + I+   L    + PD F  +S++ A G+L   + G+ +H 
Sbjct: 173 VSWNSLISGYSSHGYYEEALEIYHE-LKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHG 231

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + S      VV + LV MY K   P +AR VFD + +++SVS+  M+  Y +      
Sbjct: 232 FALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLK------ 285

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP--LVLSSIVGA 247
            +E+ E++                            + M  E +D   P  L +SS++ A
Sbjct: 286 -LEMVEES----------------------------VRMFLENLDQFKPDLLTVSSVLRA 316

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
           C +   L L K I+  ++  G+     + N ++D+YAKC D+I A+D+F  M  KD VSW
Sbjct: 317 CGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSW 376

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            SII G  Q G   E + L+  M+    + + +T++ LI   + +  +  G+ L  + I+
Sbjct: 377 NSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIK 436

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
             GI   L     L+D+ ++ G + ++  +  +M    D  TW  ++SAC    +   G 
Sbjct: 437 S-GICIDLSVSNALIDMYAKCGEVGDSLKIFSSMG-TGDTVTWNTVISACVRFGDFATGL 494

Query: 428 RVANHL 433
           +V   +
Sbjct: 495 QVTTQM 500



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 182/396 (45%), Gaps = 37/396 (9%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM-PQRDHVSWASILTAYN 80
           ++ +HA +I LGL         LID Y        +  +   + P ++   W SI+ A++
Sbjct: 23  LRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFS 82

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           +  L  + +  +   L   K+ PD + F S++KAC  L    +G  V+   +   F  D 
Sbjct: 83  KNGLFPEALEFYGK-LRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDL 141

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V ++LVDMY++ GL   AR                               ++F++ PVR
Sbjct: 142 FVGNALVDMYSRMGLLTRAR-------------------------------QVFDEMPVR 170

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           +L  W +L+SG        +A   + E++   + + D   +SS++ A  N  V++ G+ +
Sbjct: 171 DLVSWNSLISGYSSHGYYEEALEIYHELKNSWI-VPDSFTVSSVLPAFGNLLVVKQGQGL 229

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG  +  G  S + ++N +V MY K      A+ +F  M  +D VS+ ++I G  +    
Sbjct: 230 HGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMV 289

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           EE++ ++ E +    KP+ +T   ++ AC H+  +   + ++  M++  G          
Sbjct: 290 EESVRMFLENLDQ-FKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLK-AGFVLESTVRNI 347

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           L+D+ ++ G +  A ++  +M  + D  +W +++S 
Sbjct: 348 LIDVYAKCGDMITARDVFNSMECK-DTVSWNSIISG 382



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 142/324 (43%), Gaps = 47/324 (14%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           YL  + V  R       K LH+  IK G+     + N LID Y KC  V  +  +   M 
Sbjct: 411 YLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMYAKCGEVGDSLKIFSSMG 470

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
             D V+W ++++A  +       + + +T +   ++ PD   F   +  C SL A RLGK
Sbjct: 471 TGDTVTWNTVISACVRFGDFATGLQV-TTQMRKSEVVPDMATFLVTLPMCASLAAKRLGK 529

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++H C +   +  +  + ++L++MY+KCG   N+  VF+ +  ++ V+WT M+ AY   G
Sbjct: 530 EIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRDVVTWTGMIYAYGMYG 589

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             + A+E                               +F +M + G+ + D +V  +I+
Sbjct: 590 EGEKALE-------------------------------TFADMEKSGI-VPDSVVFIAII 617

Query: 246 GACANFAVLELG-------KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
            AC++  +++ G       K  + +   + + +C      +VD+ ++   I  A++    
Sbjct: 618 YACSHSGLVDEGLACFEKMKTHYKIDPMIEHYAC------VVDLLSRSQKISKAEEFIQA 671

Query: 299 MRRK-DVVSWTSIIVGTAQHGQAE 321
           M  K D   W S++      G  E
Sbjct: 672 MPIKPDASIWASVLRACRTSGDME 695



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 47/197 (23%), Positives = 91/197 (46%), Gaps = 9/197 (4%)

Query: 2   QISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
            ++ +L  L +CA        K +H  +++ G      + N LI+ Y KC  ++ +  + 
Sbjct: 508 DMATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVF 567

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
           E M +RD V+W  ++ AY      +K +  F+ M     + PD  VF +++ AC   G  
Sbjct: 568 ERMSRRDVVTWTGMIYAYGMYGEGEKALETFADM-EKSGIVPDSVVFIAIIYACSHSGLV 626

Query: 122 RLGKQVHACF--VLSPFCDDDVVK--SSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTA 176
             G    ACF  + + +  D +++  + +VD+ ++    + A     ++ +K   S W +
Sbjct: 627 DEG---LACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWAS 683

Query: 177 MLSAYARSGRKKDAMEI 193
           +L A   SG  + A  +
Sbjct: 684 VLRACRTSGDMETAERV 700


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/587 (37%), Positives = 343/587 (58%), Gaps = 6/587 (1%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LHA  ++ G+     +   L  AY   D +     LL   P    V + S + A++   L
Sbjct: 54  LHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGL 113

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
               +++ S ML    L P     +S + AC  L    LG+ +HA         D  V +
Sbjct: 114 HLAALALLSEMLG-RGLIPTSHTLSSSLPACHGLA---LGRALHAYAFKLALAGDSYVAT 169

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +L+ MYA+ G  + ARA+FD +   + V  TAML+ YA+ G   DA E+F+  P ++   
Sbjct: 170 ALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFIC 229

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W A++ G  Q     +A   F  M R GVD  D + +   + A A     E G+ +H  V
Sbjct: 230 WNAMIDGYTQHGRPNEALRLFRWMLRSGVD-PDEVAIILALSAVAQLGTAESGRWLHSYV 288

Query: 265 I-ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
             +   +    +  A++DMY KC  +  A  +F  +  KD+V W ++I G A HG + + 
Sbjct: 289 KNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKA 348

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           L ++ ++ S G+ P ++TF+GL+ ACSH GLV +G + F+SM E+Y I P ++HY C++D
Sbjct: 349 LEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVD 408

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           LL R+G ++EA +L+++M   PD   W +LL+AC+ H+N  +G ++A++L++    +   
Sbjct: 409 LLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGM 468

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
           YILLSN+YA+   W+ V++VR +M    ++KEPG S IE G+  + F AG+ SHP  DEI
Sbjct: 469 YILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEI 528

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
           + +L +++  +K +G+VP T  VLHD+++  KE+ L  HSE+LAVA+GL+ + PG  +++
Sbjct: 529 YAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKI 588

Query: 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           VKNLR C DCH V+K+IS+IT R+IV RD  R+HHF DG C+C D+W
Sbjct: 589 VKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 635



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 144/349 (41%), Gaps = 82/349 (23%)

Query: 14  ARHQIALTVKTLHAQIIK-------------LGLHQYG-------------PLPN----- 42
           A H +AL  + LHA   K             LG++  G             P P+     
Sbjct: 142 ACHGLALG-RALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVT 200

Query: 43  TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQ 102
            ++  Y K   +  A  L + MP +D + W +++  Y Q   P + + +F  ML    + 
Sbjct: 201 AMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLR-SGVD 259

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARA 161
           PD       + A   LG    G+ +H+    S     +  V ++L+DMY KCG   +A +
Sbjct: 260 PDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVS 319

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALV-----------S 210
           VF+SI  K+ V W AM++ YA  G  + A+E+F Q  +R+  LW   +           S
Sbjct: 320 VFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQ--LRSQGLWPTDITFIGLLNACSHS 377

Query: 211 GLV-------QSRNEIDAFYSFIEMRREGVDIV--------------------DPLVLSS 243
           GLV       QS  E  A    IE     VD++                    D ++  S
Sbjct: 378 GLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVS 437

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
           ++ AC     + LG+QI   ++A G      ++N+   MY   S+I AA
Sbjct: 438 LLAACRLHKNMALGQQIADYLVAGG------LANS--GMYILLSNIYAA 478


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/587 (37%), Positives = 343/587 (58%), Gaps = 6/587 (1%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LHA  ++ G+     +   L  AY   D +     LL   P    V + S + A++   L
Sbjct: 53  LHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRGL 112

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
               +++ S ML    L P     +S + AC  L    LG+ +HA         D  V +
Sbjct: 113 HLAALALLSEMLG-RGLIPTSHTLSSSLPACHGLA---LGRALHAYAFKLALAGDSYVAT 168

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +L+ MYA+ G  + ARA+FD +   + V  TAML+ YA+ G   DA E+F+  P ++   
Sbjct: 169 ALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFIC 228

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W A++ G  Q     +A   F  M R GVD  D + +   + A A     E G+ +H  V
Sbjct: 229 WNAMIDGYTQHGRPNEALRLFRWMLRSGVD-PDEVAIILALSAVAQLGTAESGRWLHSYV 287

Query: 265 I-ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
             +   +    +  A++DMY KC  +  A  +F  +  KD+V W ++I G A HG + + 
Sbjct: 288 KNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGDSRKA 347

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           L ++ ++ S G+ P ++TF+GL+ ACSH GLV +G + F+SM E+Y I P ++HY C++D
Sbjct: 348 LEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYGCMVD 407

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           LL R+G ++EA +L+++M   PD   W +LL+AC+ H+N  +G ++A++L++    +   
Sbjct: 408 LLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLANSGM 467

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
           YILLSN+YA+   W+ V++VR +M    ++KEPG S IE G+  + F AG+ SHP  DEI
Sbjct: 468 YILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCSAIEVGRKVYEFVAGDMSHPRTDEI 527

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
           + +L +++  +K +G+VP T  VLHD+++  KE+ L  HSE+LAVA+GL+ + PG  +++
Sbjct: 528 YAMLEKMNGIVKEQGHVPQTELVLHDLDEVTKEKALAVHSEKLAVAFGLISTAPGETIKI 587

Query: 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           VKNLR C DCH V+K+IS+IT R+IV RD  R+HHF DG C+C D+W
Sbjct: 588 VKNLRACADCHAVLKLISKITGRKIVFRDRNRFHHFVDGSCTCGDYW 634



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 144/349 (41%), Gaps = 82/349 (23%)

Query: 14  ARHQIALTVKTLHAQIIK-------------LGLHQYG-------------PLPN----- 42
           A H +AL  + LHA   K             LG++  G             P P+     
Sbjct: 141 ACHGLALG-RALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPDPHVVPVT 199

Query: 43  TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQ 102
            ++  Y K   +  A  L + MP +D + W +++  Y Q   P + + +F  ML    + 
Sbjct: 200 AMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWMLR-SGVD 258

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARA 161
           PD       + A   LG    G+ +H+    S     +  V ++L+DMY KCG   +A +
Sbjct: 259 PDEVAIILALSAVAQLGTAESGRWLHSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVS 318

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALV-----------S 210
           VF+SI  K+ V W AM++ YA  G  + A+E+F Q  +R+  LW   +           S
Sbjct: 319 VFNSIGDKDIVVWNAMINGYAMHGDSRKALEMFSQ--LRSQGLWPTDITFIGLLNACSHS 376

Query: 211 GLV-------QSRNEIDAFYSFIEMRREGVDIV--------------------DPLVLSS 243
           GLV       QS  E  A    IE     VD++                    D ++  S
Sbjct: 377 GLVDEGHQFFQSMEEEYAIVPKIEHYGCMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVS 436

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
           ++ AC     + LG+QI   ++A G      ++N+   MY   S+I AA
Sbjct: 437 LLAACRLHKNMALGQQIADYLVAGG------LANS--GMYILLSNIYAA 477


>gi|449451667|ref|XP_004143583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449504924|ref|XP_004162332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 595

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 220/595 (36%), Positives = 350/595 (58%), Gaps = 9/595 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPN---TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           +K + AQ+IK  +     L     TL  +    DL+ YA  +   +   +   W +I+ A
Sbjct: 4   LKQIQAQMIKTAIITEPKLATKFLTLCTSPHVGDLL-YAQRVFNGITSPNTFMWNAIIRA 62

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
           Y+ ++ P+     +  ML+   +  + + F  L++AC +L A     QVH   +   F  
Sbjct: 63  YSNSDEPELAFLSYQQMLS-SSVPHNSYTFPFLLRACRNLLAMGEALQVHGLVIKLGFGS 121

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D    ++L+ +YA CG  + AR +FD+I  +++VSW  M+  Y +SG  K A  +F   P
Sbjct: 122 DVFALNALLHVYALCGEIHCARQLFDNIPERDAVSWNIMIDGYIKSGDVKTAYGVFLDMP 181

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
           ++N+  WT+L+SGLV++   ++A     EM+  G ++ D + ++S++ ACAN   L+ G+
Sbjct: 182 LKNVVSWTSLISGLVEAGQSVEALSLCYEMQNAGFEL-DGVAIASLLTACANLGALDQGR 240

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR--RKDVVSWTSIIVGTAQ 316
            +H  V+  G +    I  A+V+MY KC D+  A  +FG+++  +KDV  WT++I G A 
Sbjct: 241 WLHFYVLNNGVDVDRVIGCALVNMYVKCGDMEEALSVFGKLKGNQKDVYIWTAMIDGFAI 300

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           HG+  E L  ++ M   G++PN +TF  ++ ACS+ GLV +G++LFKSM   Y + PS++
Sbjct: 301 HGRGVEALEWFNRMRREGIRPNSITFTAVLRACSYGGLVEEGKELFKSMKCFYNVNPSIE 360

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
           HY C++DLL RSG LDEA+ LIK MP +P    W ALL AC  HR+  +G++V  HL+ +
Sbjct: 361 HYGCMVDLLGRSGRLDEAKELIKKMPMKPSAVIWGALLKACWIHRDFLLGSQVGAHLVEV 420

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETS 496
             +    YI L+ + A+   W+  ++VR  M  + V   PG S +      H F AG   
Sbjct: 421 DSDHSGRYIQLATILAAEGKWKEAAEVRLKMKSLGVPISPGKSSVTLNGIVHEFLAGHQD 480

Query: 497 HPLKDEIFELLTELDAEMKR-RGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKS 555
           HP  ++I   L ++   +++  GY P T  +L D+E +EKE  +  HSE+LA+A+GL+ +
Sbjct: 481 HPQMEQIQLKLKQIAERLRQDEGYEPATKDLLLDLENEEKETAMAQHSEKLAIAFGLINT 540

Query: 556 VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            PGT +RV+KNLR+C DCH V K++S+I  REI++RD  R+HHF+DG CSC D+W
Sbjct: 541 KPGTTIRVIKNLRICRDCHTVAKLVSQIYSREIIMRDRVRFHHFRDGSCSCKDYW 595


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 219/609 (35%), Positives = 345/609 (56%), Gaps = 40/609 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ C+      + K  H Q    G      + + LI  Y  C  ++ A  + +E+P+R+ 
Sbjct: 83  IKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNI 142

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVF------ASLVKACGSLGATRL 123
           VSW S++  Y+        +S+F  +L +++   D  +F       S++ AC  + A  L
Sbjct: 143 VSWTSMIRGYDLNGNALDAVSLFKDLL-IEENDDDATMFLDSMGMVSVISACSRVAAKGL 201

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN--NARAVFDSIKLKNSVSWTAMLSAY 181
            + +H+  +   F     V ++L+D YAK G      AR +FD I  K+ VS+ +++S Y
Sbjct: 202 TESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVY 261

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
           A+SG   +A ++F +                               + +E V   + + L
Sbjct: 262 AQSGMSNEAFDVFRR-------------------------------LIKEKVVTFNCITL 290

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           S+++ A ++   L +GK IH  VI +G E  + +  +I+DMY KC  +  A+  F RM+ 
Sbjct: 291 STVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKN 350

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           K+V SWT++I G   HG A + L L+  M+ +GV+PN +TFV ++ ACSH GL   G   
Sbjct: 351 KNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHW 410

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F +M   +G+ P L+HY C++DLL R+G L +A +LI+ M  EPD   W++LL+AC+ H+
Sbjct: 411 FNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHK 470

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           N E+       L  L P +   Y+LLS++YA +  W+ V +VR  M    + K PG+S +
Sbjct: 471 NVELAEISVARLFELDPSNCGYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFSLL 530

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E     H+F  G+  HP +++I+E L EL+ ++   GYV +TSSV HD++++EKE  L  
Sbjct: 531 ELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVSNTSSVCHDVDEEEKEMTLRV 590

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSE+LA+A+G++ +VPG+ + VVKNLRVC DCH V+K+IS+I  RE VVRDA R+HHFKD
Sbjct: 591 HSEKLAIAFGIMNTVPGSTVNVVKNLRVCSDCHNVIKLISKIVDREFVVRDAKRFHHFKD 650

Query: 602 GKCSCNDFW 610
           G CSC D+W
Sbjct: 651 GFCSCGDYW 659



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 96/360 (26%), Positives = 166/360 (46%), Gaps = 32/360 (8%)

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           + + D  SW S++    ++    + +  FS+M  L  L P    F   +KAC SL     
Sbjct: 36  VDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKL-SLYPTRSSFPCAIKACSSLLDIFS 94

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           GKQ H    +  +  D  V S+L+ MY+ CG   +AR VFD I  +N VSWT+M+  Y  
Sbjct: 95  GKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDL 154

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           +G   DA+ +F+                L+   N+ DA              +D + + S
Sbjct: 155 NGNALDAVSLFKD---------------LLIEENDDDATM-----------FLDSMGMVS 188

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD--IIAAKDIFGRMRR 301
           ++ AC+  A   L + IH  VI  G++  + + N ++D YAK  +  +  A+ IF ++  
Sbjct: 189 VISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVD 248

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRK 360
           KD VS+ SI+   AQ G + E   ++  ++   V   N +T   ++ A SH G +  G+ 
Sbjct: 249 KDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKC 308

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           +   +I   G+   +   T ++D+  + G ++ A      M    +  +W A+++    H
Sbjct: 309 IHDQVIR-MGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMK-NKNVRSWTAMIAGYGMH 366



 Score = 43.9 bits (102), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 34/155 (21%), Positives = 69/155 (44%), Gaps = 3/155 (1%)

Query: 295 IFGR-MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
           +F R + + DV SW S+I   A+ G + E L  +  M    + P   +F   I ACS + 
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLL 90

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
            +  G++  +     +G    +   + L+ + S  G L++A  +   +P + +  +W ++
Sbjct: 91  DIFSGKQTHQQAFV-FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRNIVSWTSM 148

Query: 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
           +     + N      +   LL  + +D ++  L S
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDS 183


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 222/590 (37%), Positives = 334/590 (56%), Gaps = 36/590 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K++H QI+K        +   L+  Y +   +  A  +  EMP+ D V W+ ++  + Q 
Sbjct: 267 KSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQN 326

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               K + IF  M     + P+ F  +S++  C     + LG+Q+H   V   F  D  V
Sbjct: 327 GFCNKAVDIFIRMRE-GFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDVYV 385

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+D+YAKC   + A  +F  +  KN VSW  ++  Y   G    A+ +F +A     
Sbjct: 386 SNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREAL---- 441

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                        RN++                V  +  SS +GACA+ A +ELG Q+HG
Sbjct: 442 -------------RNQVS---------------VTEVTFSSALGACASLASMELGVQVHG 473

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L I       + +SN+++DMYAKC DI  A+ +F  M   DV SW ++I G + HG   +
Sbjct: 474 LAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQ 533

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L ++D M  +  KPN +TF+G++  CS+ GL+ +G+  F+SMI D+GI P L+HYTC++
Sbjct: 534 ALRIFDIMKGSDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMV 593

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
            L  RSG LD+A NLI+ +P+EP    W A+LSA  +  N E   R A  +L + P+D +
Sbjct: 594 RLFGRSGQLDKAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDEA 653

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y+LLSN+YA A  W +V+ +RK M    VKKEPG S+IE     H F  G + HP    
Sbjct: 654 TYVLLSNMYAGAKQWANVASIRKSMKEKGVKKEPGLSWIEHQGDVHFFSVGSSDHPDMKL 713

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I  +L  L+ +  R GYVPD ++VL DM+ +EK+++L+ HSERLA+AYGL++ +P +  R
Sbjct: 714 INGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVR-MPSSRNR 772

Query: 563 VV--KNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++  KNLR+C DCH  MK+IS I +R++V+RD  R+HHF  G CSC+D W
Sbjct: 773 ILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCDDHW 822



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 186/401 (46%), Gaps = 45/401 (11%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LH+ I+KLG      +   LI+AY  C  V  A  + E +  +D V WA I++ Y +   
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGC 227

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA-----CFVLSPFCDD 139
            + ++ + S M  +D   P+++ F + +KA   LGA    K VH      C+ L P    
Sbjct: 228 FEDSLQLLSRM-GMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDP---- 282

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
                       + G+                     +L  Y + G   DA ++F + P 
Sbjct: 283 ------------RVGV--------------------GLLQLYTQLGDMSDAFKVFNEMPK 310

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
            ++  W+ +++   Q+     A   FI MR EG  + +   LSSI+  CA      LG+Q
Sbjct: 311 NDVVPWSFMIARFCQNGFCNKAVDIFIRMR-EGFVVPNEFTLSSILNGCAIGKCSGLGEQ 369

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           +HGLV+ +G++  +++SNA++D+YAKC  +  A  +F  +  K+VVSW ++IVG    G+
Sbjct: 370 LHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGE 429

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
             + L ++ E +   V   EVTF   + AC+ +  +  G ++    I+       +    
Sbjct: 430 GGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNN-AKRVAVSN 488

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            L+D+ ++ G +  A+ +   M    D  +W AL+S    H
Sbjct: 489 SLIDMYAKCGDIKVAQTVFNEME-TIDVASWNALISGYSTH 528



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 96/186 (51%), Gaps = 1/186 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA  + +   + LH  ++K+G      + N LID Y KC+ +  A  L  E+  ++ 
Sbjct: 355 LNGCAIGKCSGLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNV 414

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++  Y       K +++F   L  +++      F+S + AC SL +  LG QVH 
Sbjct: 415 VSWNTVIVGYENLGEGGKALNMFREALR-NQVSVTEVTFSSALGACASLASMELGVQVHG 473

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +       V +SL+DMYAKCG    A+ VF+ ++  +  SW A++S Y+  G  + 
Sbjct: 474 LAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQ 533

Query: 190 AMEIFE 195
           A+ IF+
Sbjct: 534 ALRIFD 539



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 117/240 (48%), Gaps = 9/240 (3%)

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
           +L+AY ++G  KDA+ +F++ P RN   +  L  G        D    +  + REG ++ 
Sbjct: 90  LLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYACQ----DPVGLYSRLHREGHEL- 144

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           +P V +S +    +    E+   +H  ++ LGY+S  F+  A+++ Y+ C  + +A+ +F
Sbjct: 145 NPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARSVF 204

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
             +  KD+V W  I+    ++G  E++L L   M   G  PN  TF   + A   +G   
Sbjct: 205 EGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFH 264

Query: 357 KGRKLFKSMIED-YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
             + +   +++  Y + P +     LL L ++ G + +A  +   MP + D   W+ +++
Sbjct: 265 FAKSVHGQILKTCYELDPRVG--VGLLQLYTQLGDMSDAFKVFNEMP-KNDVVPWSFMIA 321



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 34/221 (15%)

Query: 7   LHRLRVCARHQIALTVKTLHAQI--------IKLGLHQYG-----------PLPNTLIDA 47
           L+  R   R+Q+++T  T  + +        ++LG+  +G            + N+LID 
Sbjct: 434 LNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDM 493

Query: 48  YGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV 107
           Y KC  ++ A  +  EM   D  SW ++++ Y+   L ++ + IF  M   D  +P+   
Sbjct: 494 YAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSD-CKPNGLT 552

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-----SSLVDMYAKCGLPNNARAV 162
           F  ++  C + G    G+    CF  S  CD  +       + +V ++ + G  + A  +
Sbjct: 553 FLGVLSGCSNAGLIDQGQD---CFE-SMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNL 608

Query: 163 FDSIKLKNSVS-WTAMLSA----YARSGRKKDAMEIFEQAP 198
            + I  + SV  W AMLSA    Y     ++ A EI +  P
Sbjct: 609 IEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINP 649


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/569 (36%), Positives = 328/569 (57%), Gaps = 35/569 (6%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           L+  Y     ++ A ++ +E+P +D VSW ++++ Y +    ++ + +F  M+  + ++P
Sbjct: 135 LVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTN-VRP 193

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D     +++ A    G+  LG+QVH+      F  +  + ++L+D Y+KCG    A  +F
Sbjct: 194 DESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLF 253

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
             +  K+ +SW  ++  Y      K+A+ +F+                            
Sbjct: 254 LGLSYKDVISWNILIGGYTHLNLYKEALLLFQ---------------------------- 285

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL--GYESCLFISNAIVD 281
              EM R G    D  +LS I+ ACA+   +++G+ IH  +     G  +   +  +++D
Sbjct: 286 ---EMLRSGESPNDVTMLS-ILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLID 341

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY+KC DI AA  +F  M  K + +W ++I G A HG+A     ++  M    +KP+++T
Sbjct: 342 MYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDIT 401

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           FVGL+ ACSH G++  GR +F+SM  +Y ITP L+HY C++DLL  SG   EAE +I  M
Sbjct: 402 FVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKEAEEMISTM 461

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
             EPD   W +LL ACK H N E+G + A +L  ++P +P SY+LLSN+YA+A  W  V+
Sbjct: 462 TMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYATAGRWNEVA 521

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           ++R L++   +KK PG S IE     H F  G+  HP   EI+ +L E++  ++  G+VP
Sbjct: 522 RIRGLLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLQEAGFVP 581

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           DTS VL +ME++ KE  L  HSE+LA+A+GL+ + P T L +VKNLRVC +CH   K+IS
Sbjct: 582 DTSEVLQEMEEEFKEGALRHHSEKLAIAFGLISTKPETKLTIVKNLRVCRNCHEATKLIS 641

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I KREI+ RD TR+HHF+DG CSCND+W
Sbjct: 642 KIYKREIIARDRTRFHHFRDGVCSCNDYW 670



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 208/396 (52%), Gaps = 6/396 (1%)

Query: 56  YAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115
           YA  + E + + + + W ++   +  +  P   + ++  M++L  L P+ + F  L+K+C
Sbjct: 15  YAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLG-LLPNSYTFPFLLKSC 73

Query: 116 GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWT 175
             L A++ G Q+H   +   +  D  V +SL+ MY +     +A  VFD    ++ VS+T
Sbjct: 74  AKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYT 133

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
           A+++ YA  G  + A  +F++ PV+++  W A++SG V++ N  +A   F EM +  V  
Sbjct: 134 ALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVR- 192

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
            D   + +++ A A    +ELG+Q+H  +   G+ S L I NA++D Y+KC ++  A  +
Sbjct: 193 PDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGL 252

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
           F  +  KDV+SW  +I G       +E L L+ EM+ +G  PN+VT + +++AC+H+G +
Sbjct: 253 FLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAI 312

Query: 356 GKGRKLFKSMIEDY-GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
             GR +   + +   G+T +    T L+D+ S+ G ++ A  +  +M      P W A++
Sbjct: 313 DIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSM-LHKSLPAWNAMI 371

Query: 415 SACKHHRNTEMGTRVANHLL--SLKPEDPSSYILLS 448
                H        + + +    +KP+D +   LLS
Sbjct: 372 FGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLS 407


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/589 (36%), Positives = 356/589 (60%), Gaps = 3/589 (0%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           V  +HAQ+I+ G  Q   +   L+ +  KC  + YA  + +     +   + +++  +  
Sbjct: 65  VLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVS 124

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
           +    + I ++S ML  + + PD+++ AS++KACGS  A R G++VH+  +   F  + +
Sbjct: 125 SGNYLEAIQLYSRMLH-ESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRL 183

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V+  ++++Y KCG   +AR VF+ +  ++ V+ T M+S+Y+  G  ++A  +F +   ++
Sbjct: 184 VRLRIMELYGKCGELGDARRVFEEMP-EDVVASTVMISSYSDQGLVEEAGAVFSRVRRKD 242

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
              WTA++ G V++     A  +F  M+ E V   +   +  ++ AC+    LE+G+ +H
Sbjct: 243 TVCWTAMIDGFVRNEETNRALEAFRGMQGENVR-PNEFTIVCVLSACSQLGALEIGRWVH 301

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             +     E  LF+ NA+++MY++C  I  A+ +F  M+ +DV+++ ++I G + +G++ 
Sbjct: 302 SYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSR 361

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           + + L+  MV   ++P  VTFVG++ ACSH GLV  G ++F SM  DY + P ++HY C+
Sbjct: 362 QAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCM 421

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL R G L+EA +LI+ M   PD      LLSACK H+N E+G +VA  L      D 
Sbjct: 422 VDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADS 481

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            +Y+LLS+VYAS+  W+  ++VR  M    ++KEPG S IE     H F  G+  HP K+
Sbjct: 482 GTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKE 541

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            I+E L EL+  ++  GY P+   VL D+E  EKE  L  HSERLA+ YGL+ + P T++
Sbjct: 542 RIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMI 601

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           RV+KNLRVC DCH  +K+I++IT+R+IVVRD  R+H+F++G CSC D+W
Sbjct: 602 RVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 650



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 132/317 (41%), Gaps = 67/317 (21%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--- 66
           L+ C         + +H++ +KLG      +   +++ YGKC  +  A  + EEMP+   
Sbjct: 154 LKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVV 213

Query: 67  ---------------------------RDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
                                      +D V W +++  + +     + +  F  M   +
Sbjct: 214 ASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALEAFRGMQG-E 272

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            ++P+ F    ++ AC  LGA  +G+ VH+         +  V ++L++MY++CG  + A
Sbjct: 273 NVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEA 332

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE- 218
           + VFD +K ++ +++  M+S  + +G+ + A+E+F     R L        G++ + +  
Sbjct: 333 QTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHG 392

Query: 219 --ID-AFYSFIEMRR-------------------------EGVDIV-------DPLVLSS 243
             +D  F  F  M R                         E  D++       D ++L +
Sbjct: 393 GLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGT 452

Query: 244 IVGACANFAVLELGKQI 260
           ++ AC     LELG+Q+
Sbjct: 453 LLSACKMHKNLELGEQV 469


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/609 (36%), Positives = 358/609 (58%), Gaps = 39/609 (6%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S Y   +++CA  +     + LH+ ++K G H YG +   L+DAY K   +  A  +   
Sbjct: 307 STYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLL 366

Query: 64  MP-QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
           M   ++ VSW +++    Q        ++FS M   D + P+ F +++++ A        
Sbjct: 367 MSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMRE-DGVAPNDFTYSTILTA----SVAS 421

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           L  Q+HA           V+K++      +C                 S+  TA+L++Y+
Sbjct: 422 LPPQIHA----------QVIKTNY-----EC----------------TSIVGTALLASYS 450

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           +    ++A+ IF+    +++  W+A+++   Q+ +   A   FI+M   G+   +   +S
Sbjct: 451 KLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLK-PNEFTIS 509

Query: 243 SIVGACAN-FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           S++ ACA+  A ++LG+Q H + I       L +S+A+V MYA+   I +A+ IF R   
Sbjct: 510 SVIDACASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIFERQTD 569

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           +D+VSW S++ G AQHG +++ L ++ +M + G++ + VTF+ +I  C+H GLV +G++ 
Sbjct: 570 RDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQRY 629

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F SM  DYGITP+++HY C++DL SR+G LDEA +LI+ M F      W  LL ACK H+
Sbjct: 630 FDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMVWRTLLGACKVHK 689

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           N E+G   A  LLSL+P D ++Y+LLSN+Y++A  W+   +VRKLM   +VKKE G S+I
Sbjct: 690 NVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVKKEAGCSWI 749

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           +     H F A + SHPL ++I+  L  +  ++K+ GY PDTS  LH++ +++KE  L  
Sbjct: 750 QIKNKVHSFIASDKSHPLSEQIYAKLRAMTTKLKQEGYCPDTSFALHEVAEEQKEAMLAM 809

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSERLA+A+GL+ + PG  L + KNLRVCGDCH V+KM+S+I  REIV+RD +R+HHF  
Sbjct: 810 HSERLALAFGLIATPPGAPLHIFKNLRVCGDCHTVIKMVSKIEDREIVMRDCSRFHHFNS 869

Query: 602 GKCSCNDFW 610
           G CSC DFW
Sbjct: 870 GVCSCGDFW 878



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/436 (27%), Positives = 200/436 (45%), Gaps = 45/436 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLP--NTLIDAYGKCDLVQYAHHLLEEMPQR 67
           L+VC      +  K LH   I+ G H  G +    +L+D Y K   V     + E MP+R
Sbjct: 110 LKVCGSVPDRVLGKQLHGLCIRCG-HDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKR 168

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           + V+W S+LT Y Q       + +F  M A + + P+   FAS++    S G   LG++V
Sbjct: 169 NVVTWTSLLTGYIQDGALSDVMELFFRMRA-EGVWPNSVTFASVLSVVASQGMVDLGRRV 227

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           HA  V    C    V +SL++MYAKCGL   AR VF  ++ ++ VSW  +++    +G  
Sbjct: 228 HAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHD 287

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
            +A+++F  +                                R  + ++     ++++  
Sbjct: 288 LEALQLFHDS--------------------------------RSSITMLTQSTYATVIKL 315

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVS 306
           CAN   L L +Q+H  V+  G+ S   +  A++D Y+K   +  A DIF  M   ++VVS
Sbjct: 316 CANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVS 375

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           WT++I G  Q+G      AL+  M   GV PN+ T+  ++ A           ++ K+  
Sbjct: 376 WTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVASLPPQIHAQVIKTNY 435

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
           E   I       T LL   S+  + +EA ++ K M  + D  +W+A+L+      +++  
Sbjct: 436 ECTSIVG-----TALLASYSKLCNTEEALSIFK-MIDQKDVVSWSAMLTCYAQAGDSDGA 489

Query: 427 TRVANHLL--SLKPED 440
           T +   +    LKP +
Sbjct: 490 TNIFIKMTMHGLKPNE 505



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 167/349 (47%), Gaps = 36/349 (10%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSI 166
              ++K CGS+    LGKQ+H   +       DV V +SLVDMY K              
Sbjct: 106 LVGVLKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMK-------------- 151

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
                  W +++          D  ++FE  P RN+  WT+L++G +Q     D    F 
Sbjct: 152 -------WHSVV----------DGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFF 194

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            MR EGV   + +  +S++   A+  +++LG+++H   +  G  S +F+ N++++MYAKC
Sbjct: 195 RMRAEGV-WPNSVTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKC 253

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             +  A+ +F  M  +D+VSW +++ G   +G   E L L+ +  S+     + T+  +I
Sbjct: 254 GLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVI 313

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
             C+++  +G  R+L  S+++  G        T L+D  S++G L  A ++   M    +
Sbjct: 314 KLCANIKQLGLARQLHSSVLK-RGFHSYGNVMTALMDAYSKAGQLGNALDIFLLMSGSQN 372

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLL--SLKPEDPSSYILLSNVYAS 453
             +W A+++ C  + +  +   + + +    + P D +   +L+   AS
Sbjct: 373 VVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVAS 421



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 113/231 (48%), Gaps = 11/231 (4%)

Query: 190 AMEIFEQAPVRNLF---LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
           A + F++ P RN     L+     G V       A   F+++ R     V    L  ++ 
Sbjct: 57  ARQAFDEIPHRNTLDHALFDHARRGSVH-----QALDHFLDVHRCHGGRVGGGALVGVLK 111

Query: 247 ACANFAVLELGKQIHGLVIALGYESC-LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            C +     LGKQ+HGL I  G++   + +  ++VDMY K   ++  + +F  M +++VV
Sbjct: 112 VCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRNVV 171

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +WTS++ G  Q G   + + L+  M + GV PN VTF  ++   +  G+V  GR++    
Sbjct: 172 TWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHAQS 231

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           ++ +G   ++     L+++ ++ G ++EA  +   M    D  +W  L++ 
Sbjct: 232 VK-FGCCSTVFVCNSLMNMYAKCGLVEEARVVFCGMETR-DMVSWNTLMAG 280


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  424 bits (1090), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/618 (38%), Positives = 338/618 (54%), Gaps = 43/618 (6%)

Query: 1   MQISH-------YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL 53
           MQIS        +L+ L+ C    +    K +H Q  K G      + N+L+  Y K   
Sbjct: 76  MQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQ 135

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           + YA  + +++  R  VSW SI++ Y Q   P + +++F  M   + ++PD     S++ 
Sbjct: 136 ISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCN-VKPDWIALVSVMT 194

Query: 114 ACGSLGATRLGKQVHACFV-LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSV 172
           A  ++     GK +H     L    + D+V  SL  MYAK GL   AR  F+ +      
Sbjct: 195 AYTNVEDLGQGKSIHGLVTKLGLEFEPDIV-ISLTTMYAKRGLVEVARFFFNRM------ 247

Query: 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
                                  + P  NL LW A++SG   +    +A   F EM  + 
Sbjct: 248 -----------------------EKP--NLILWNAMISGYANNGYGEEAIKLFREMITKN 282

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
           +  VD + + S V A A    LEL + + G +    Y    F++  ++DMYAKC  I  A
Sbjct: 283 IR-VDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLA 341

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
           + +F R+  KDVV W+ +I+G   HG  +E + LY+EM  AGV PN+ TF+GL+ AC + 
Sbjct: 342 RCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNS 401

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           GLV +G +LF  ++ D+GI P  QHY+C++DLL R+G+L++A + I +MP +P    W A
Sbjct: 402 GLVKEGWELFH-LMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGA 460

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
           LLSACK HR   +G   A  L  L P +   Y+ LSN+YASA +W  V+ VR +M+   +
Sbjct: 461 LLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGL 520

Query: 473 KKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQ 532
            K+ G+S IE       F  G+ SHP   EIFE L  L+  +K  GYVP   SVLHD+  
Sbjct: 521 NKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNH 580

Query: 533 KEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRD 592
           +E E  L  HSERLAVAYG++ + PGT LR+ KNLR C +CH  +K+IS++  REI++RD
Sbjct: 581 EEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRD 640

Query: 593 ATRYHHFKDGKCSCNDFW 610
           A R+HHFKDG CSC DFW
Sbjct: 641 AKRFHHFKDGVCSCGDFW 658



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 193/428 (45%), Gaps = 66/428 (15%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           ++ Q+I  GLH+   L    I+A      V YAH    E+ + D + W +I+  Y Q N+
Sbjct: 6   VYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNI 65

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
               I ++  M  + ++ P+ F F  ++KACG      +GKQ+H       F  +  V++
Sbjct: 66  VDAPIRMYMDM-QISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQN 124

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SLV MYAK G  + AR VFD +  +  VSWT+++S Y ++G   +A+ +F+         
Sbjct: 125 SLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFK--------- 175

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                                 EMR+  V   D + L S++ A  N   L  GK IHGLV
Sbjct: 176 ----------------------EMRQCNVK-PDWIALVSVMTAYTNVEDLGQGKSIHGLV 212

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
             LG E    I  ++  MYAK   +  A+  F RM + +++ W ++I G A +G  EE +
Sbjct: 213 TKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAI 272

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL---------------FKSMIEDY 369
            L+ EM++  ++ + +T    + A + VG +   R L                  +I+ Y
Sbjct: 273 KLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMY 332

Query: 370 GITPSLQHYTCLLDLLSRS---------------GHLDEA---ENLIKAMPFEPDEPTWA 411
               S+    C+ D ++                 GH  EA    N +K     P++ T+ 
Sbjct: 333 AKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFI 392

Query: 412 ALLSACKH 419
            LL+ACK+
Sbjct: 393 GLLTACKN 400



 Score = 53.1 bits (126), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 37/247 (14%)

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           Q++  +I  G   C F+    ++      D+  A   F  +   D++ W +II G  Q  
Sbjct: 5   QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 64

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL----FK----------- 363
             +  + +Y +M  + V PN  TF+ ++ AC    + G G+++    FK           
Sbjct: 65  IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQN 124

Query: 364 ---SMIEDYGITP------------SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
              SM   +G               ++  +T ++    ++G   EA N+ K M     +P
Sbjct: 125 SLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVKP 184

Query: 409 TWAALLSACKHHRNTE-MGTRVANHLLSLK---PEDPSSYILLSNVYASAAMWQHVSKVR 464
            W AL+S    + N E +G   + H L  K     +P   I L+ +YA   +   V   R
Sbjct: 185 DWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGL---VEVAR 241

Query: 465 KLMSVME 471
              + ME
Sbjct: 242 FFFNRME 248


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 227/607 (37%), Positives = 339/607 (55%), Gaps = 34/607 (5%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S Y   L+ C R     + +    Q +  G      +   +++ Y KC  +  A  + ++
Sbjct: 106 STYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDVFVGAAVLNLYAKCGKMDEAMRVFDK 165

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           M +RD V W +++T   Q    ++ + I+  M    +++ D  V   L++AC +LG +++
Sbjct: 166 MGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHK-KRVEGDGVVMLGLIQACTTLGHSKM 224

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G  +H   +      D +V++SLVDMYAK                               
Sbjct: 225 GLSIHGYMIRKDIIMDVIVQTSLVDMYAK------------------------------- 253

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           +G  + A  +F +   +N+  W+AL+SG  Q+    +A    ++M+  G    D + L S
Sbjct: 254 NGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYK-PDSVSLVS 312

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++ AC+    L+LGK +HG ++   +  C+  S A++DMY+KC  +  A+ +F ++  +D
Sbjct: 313 VLLACSQVGFLKLGKSVHGYIVRRLHFDCVS-STAVIDMYSKCGSLSFARTVFDQISFRD 371

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
            +SW +II     HG  EE L+L+ +M    VKP+  TF  L+ A SH GLV KGR  F 
Sbjct: 372 SISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFS 431

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
            M+ +Y I PS +HY C++DLLSR+G ++EA+ LI++M  EP    W ALLS C +H   
Sbjct: 432 IMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLNHGKF 491

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
            +G   A  +L L P+DP  Y L+SN +A+A  W  V++VRK+M    +KK PGYS +E 
Sbjct: 492 LIGEMAAKKVLELNPDDPGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGYSVMEV 551

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
               H F   + SH   +EI ++L +LD EMK  GYVP T  VLH++E++ KER L  HS
Sbjct: 552 NGKLHAFLMEDKSHHQYEEIMQVLGKLDYEMKAMGYVPKTEFVLHNLEEEVKERMLCNHS 611

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           ERLA+A+GLL + PGT L + KNLRVCGDCH   K IS+I  REIVVRD  R+HHFKDG 
Sbjct: 612 ERLAIAFGLLNTGPGTRLLITKNLRVCGDCHEATKFISKIVNREIVVRDVKRFHHFKDGV 671

Query: 604 CSCNDFW 610
           CSC D+W
Sbjct: 672 CSCGDYW 678



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 229/465 (49%), Gaps = 54/465 (11%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           T+  +HA +I  G+  +G     LI +Y +   ++ A  + ++ PQ    +W +++ AY+
Sbjct: 22  TIAKIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYS 81

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           +     + +S++  M A + ++PD   +  ++KAC      R G++     V   + DD 
Sbjct: 82  RRGAMFEALSLYHRM-ASEGVRPDSSTYTVVLKACTRSLDLRSGEETWRQAVDQGYGDDV 140

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V ++++++YAKCG  + A  VFD +  ++ V WT M++  A++G+ ++A++I+ Q   +
Sbjct: 141 FVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHKK 200

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
                                       R EG    D +V+  ++ AC      ++G  I
Sbjct: 201 ----------------------------RVEG----DGVVMLGLIQACTTLGHSKMGLSI 228

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG +I       + +  ++VDMYAK   +  A  +F RM  K+V+SW+++I G AQ+G A
Sbjct: 229 HGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFA 288

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
              L L  +M S G KP+ V+ V ++ ACS VG +    KL KS+   +G      H+ C
Sbjct: 289 GNALQLVVDMQSFGYKPDSVSLVSVLLACSQVGFL----KLGKSV---HGYIVRRLHFDC 341

Query: 381 -----LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL-- 433
                ++D+ S+ G L  A  +   + F  D  +W A++++   H + E    +   +  
Sbjct: 342 VSSTAVIDMYSKCGSLSFARTVFDQISFR-DSISWNAIIASYGIHGSGEEALSLFLQMRE 400

Query: 434 LSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM--EVKKEP 476
            ++KP D +++  L + ++ + +   V K R   S+M  E K +P
Sbjct: 401 TNVKP-DHATFASLLSAFSHSGL---VEKGRYWFSIMVNEYKIQP 441


>gi|296083568|emb|CBI23560.3| unnamed protein product [Vitis vinifera]
          Length = 497

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 209/498 (41%), Positives = 308/498 (61%), Gaps = 37/498 (7%)

Query: 149 MYAKC---GLPNNARAVFDSIKLKNSVSWTAMLSAY------------------------ 181
           MYAKC   G  +++R VF+ +   N +SWTA+++AY                        
Sbjct: 1   MYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELFCKMISASVNC 60

Query: 182 ---------ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
                    ARSGR +DA + F+    +NL  + A+V G  ++    +AF  F E+   G
Sbjct: 61  VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTG 120

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
           + I      +S++   A+   +  G+QIHG ++  GY+S   I NA++ MY++C +I AA
Sbjct: 121 IGI-SAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAA 179

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
             +F  M  ++V+SWTS+I G A+HG A   L ++ +M+  G KPNE+T+V ++ ACSHV
Sbjct: 180 FQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHV 239

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           G++ +G+K F SM +++GI P ++HY C++DLL RSG L EA   I +MP   D   W  
Sbjct: 240 GMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRT 299

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
           LL AC+ H NTE+G   A  +L  +P+DP++YILLSN++ASA  W+ V K+RK M    +
Sbjct: 300 LLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNL 359

Query: 473 KKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQ 532
            KE G S+IE     H F+ GETSHP   +I++ L +L +++K  GY+PDT  VLHD+E+
Sbjct: 360 IKEAGCSWIEVENRVHRFHVGETSHPQAWQIYQELDQLASKIKEMGYIPDTDFVLHDIEE 419

Query: 533 KEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRD 592
           ++KE+ LF HSE++AVA+GL+ +     +R+ KNLRVCGDCH  +K IS  T REIVVRD
Sbjct: 420 EQKEQFLFQHSEKIAVAFGLISTSQSKPIRIFKNLRVCGDCHTAIKYISMATGREIVVRD 479

Query: 593 ATRYHHFKDGKCSCNDFW 610
           + R+HH K+G CSCND+W
Sbjct: 480 SNRFHHIKNGVCSCNDYW 497



 Score = 82.0 bits (201), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 68/317 (21%), Positives = 138/317 (43%), Gaps = 55/317 (17%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           C +  I L  K + A +  +G        N+LI  Y +   ++ A    + + +++ VS+
Sbjct: 42  CDKEAIELFCKMISASVNCVG--------NSLISMYARSGRMEDARKAFDILFEKNLVSY 93

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            +I+  Y + NL  +   +    +A   +    F FASL+    S+GA   G+Q+H   +
Sbjct: 94  NAIVDGYAK-NLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLL 152

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
              +  +  + ++L+ MY++CG    A  VF+ ++ +N +SWT+M++ +A+ G    A+E
Sbjct: 153 KGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALE 212

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +                            F+  +E   +  +I    VLS    AC++  
Sbjct: 213 M----------------------------FHKMLETGTKPNEITYVAVLS----ACSHVG 240

Query: 253 VLELGK-------QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDV 304
           ++  G+       + HG+V  + + +C+      VD+  +   ++ A +    M    D 
Sbjct: 241 MISEGQKHFNSMYKEHGIVPRMEHYACM------VDLLGRSGLLVEAMEFINSMPLMADA 294

Query: 305 VSWTSIIVGTAQHGQAE 321
           + W +++     HG  E
Sbjct: 295 LVWRTLLGACRVHGNTE 311



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 15/186 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H +++K G      + N LI  Y +C  ++ A  +  EM  R+ +SW S++T + + 
Sbjct: 145 EQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKH 204

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + +F  ML     +P+   + +++ AC  +G    G++       S + +  +V
Sbjct: 205 GFATRALEMFHKMLETGT-KPNEITYVAVLSACSHVGMISEGQK----HFNSMYKEHGIV 259

Query: 143 K-----SSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARSGR----KKDAME 192
                 + +VD+  + GL   A    +S+ L  +++ W  +L A    G     +  A  
Sbjct: 260 PRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNTELGRHAAEM 319

Query: 193 IFEQAP 198
           I EQ P
Sbjct: 320 ILEQEP 325


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 235/618 (38%), Positives = 338/618 (54%), Gaps = 43/618 (6%)

Query: 1   MQISH-------YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL 53
           MQIS        +L+ L+ C    +    K +H Q  K G      + N+L+  Y K   
Sbjct: 91  MQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQ 150

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           + YA  + +++  R  VSW SI++ Y Q   P + +++F  M   + ++PD     S++ 
Sbjct: 151 ISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCN-VKPDWIALVSVMT 209

Query: 114 ACGSLGATRLGKQVHACFV-LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSV 172
           A  ++     GK +H     L    + D+V  SL  MYAK GL   AR  F+ +      
Sbjct: 210 AYTNVEDLGQGKSIHGLVTKLGLEFEPDIV-ISLTTMYAKRGLVEVARFFFNRM------ 262

Query: 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
                                  + P  NL LW A++SG   +    +A   F EM  + 
Sbjct: 263 -----------------------EKP--NLILWNAMISGYANNGYGEEAIKLFREMITKN 297

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
           +  VD + + S V A A    LEL + + G +    Y    F++  ++DMYAKC  I  A
Sbjct: 298 IR-VDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLA 356

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
           + +F R+  KDVV W+ +I+G   HG  +E + LY+EM  AGV PN+ TF+GL+ AC + 
Sbjct: 357 RCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNS 416

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           GLV +G +LF  ++ D+GI P  QHY+C++DLL R+G+L++A + I +MP +P    W A
Sbjct: 417 GLVKEGWELFH-LMPDHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGA 475

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
           LLSACK HR   +G   A  L  L P +   Y+ LSN+YASA +W  V+ VR +M+   +
Sbjct: 476 LLSACKIHRKVRLGEIAAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGL 535

Query: 473 KKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQ 532
            K+ G+S IE       F  G+ SHP   EIFE L  L+  +K  GYVP   SVLHD+  
Sbjct: 536 NKDLGHSSIEINGNLETFQVGDRSHPKSKEIFEELDRLEKRLKAAGYVPHMESVLHDLNH 595

Query: 533 KEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRD 592
           +E E  L  HSERLAVAYG++ + PGT LR+ KNLR C +CH  +K+IS++  REI++RD
Sbjct: 596 EEIEETLCHHSERLAVAYGIISTAPGTTLRITKNLRACINCHSAIKLISKLVDREIIIRD 655

Query: 593 ATRYHHFKDGKCSCNDFW 610
           A R+HHFKDG CSC DFW
Sbjct: 656 AKRFHHFKDGVCSCGDFW 673



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 119/428 (27%), Positives = 193/428 (45%), Gaps = 66/428 (15%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           ++ Q+I  GLH+   L    I+A      V YAH    E+ + D + W +I+  Y Q N+
Sbjct: 21  VYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKNI 80

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
               I ++  M  + ++ P+ F F  ++KACG      +GKQ+H       F  +  V++
Sbjct: 81  VDAPIRMYMDM-QISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGFGSNVFVQN 139

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SLV MYAK G  + AR VFD +  +  VSWT+++S Y ++G   +A+ +F+         
Sbjct: 140 SLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFK--------- 190

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                                 EMR+  V   D + L S++ A  N   L  GK IHGLV
Sbjct: 191 ----------------------EMRQCNVK-PDWIALVSVMTAYTNVEDLGQGKSIHGLV 227

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
             LG E    I  ++  MYAK   +  A+  F RM + +++ W ++I G A +G  EE +
Sbjct: 228 TKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAI 287

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL---------------FKSMIEDY 369
            L+ EM++  ++ + +T    + A + VG +   R L                  +I+ Y
Sbjct: 288 KLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMY 347

Query: 370 GITPSLQHYTCLLDLLSRS---------------GHLDEA---ENLIKAMPFEPDEPTWA 411
               S+    C+ D ++                 GH  EA    N +K     P++ T+ 
Sbjct: 348 AKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFI 407

Query: 412 ALLSACKH 419
            LL+ACK+
Sbjct: 408 GLLTACKN 415



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/260 (23%), Positives = 105/260 (40%), Gaps = 37/260 (14%)

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
           G+   F +L+   Q++  +I  G   C F+    ++      D+  A   F  +   D++
Sbjct: 7   GSSWMFMLLKHLDQVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDIL 66

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL---- 361
            W +II G  Q    +  + +Y +M  + V PN  TF+ ++ AC    + G G+++    
Sbjct: 67  LWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQT 126

Query: 362 FK--------------SMIEDYGITP------------SLQHYTCLLDLLSRSGHLDEAE 395
           FK              SM   +G               ++  +T ++    ++G   EA 
Sbjct: 127 FKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEAL 186

Query: 396 NLIKAMPFEPDEPTWAALLSACKHHRNTE-MGTRVANHLLSLK---PEDPSSYILLSNVY 451
           N+ K M     +P W AL+S    + N E +G   + H L  K     +P   I L+ +Y
Sbjct: 187 NVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMY 246

Query: 452 ASAAMWQHVSKVRKLMSVME 471
           A   +   V   R   + ME
Sbjct: 247 AKRGL---VEVARFFFNRME 263


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 204/561 (36%), Positives = 336/561 (59%), Gaps = 3/561 (0%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTM-LALDKLQ 102
            I  +  C LV YA  + +     + V+W  +L+ YN+    +++  +F  M    + + 
Sbjct: 177 FIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVS 236

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV-KSSLVDMYAKCGLPNNARA 161
           P+      ++ AC  L     GK ++  ++     + +++ +++L+DM+A CG  + AR 
Sbjct: 237 PNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARG 296

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VFD +K ++ +SWT++++ +A + R   A + F+Q P R+   WTA++ G ++     + 
Sbjct: 297 VFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEV 356

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F +M+   V   D   + SI+ ACA+   LELG+     +     ++  FI NA++D
Sbjct: 357 LTLFRDMQMSNVK-PDEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALID 415

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC ++  AK IF  M++KD  +WT++IVG A +G  EE L ++  M+ A V P+E+T
Sbjct: 416 MYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEIT 475

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           ++G++ AC+HVGLV KG+  F +M   +GI P+L HY C++DLL R+GHL EA  +I  M
Sbjct: 476 YIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNM 535

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P +P+   W +LL AC+ H+N ++    AN +L L+PE+ + Y+LL N+YA+   W+++ 
Sbjct: 536 PVKPNSIVWGSLLGACRVHKNVQLAEMAANEILELEPENGAVYVLLCNIYAACKKWKNLH 595

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
            VRK+M    +KK PG S +E     + F AG+ SHP   EI+  L  +  ++   GY P
Sbjct: 596 NVRKMMMERGIKKIPGCSLMEMNGIVYEFVAGDKSHPQSKEIYAKLENMKQDLSNAGYSP 655

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           DTS V  D+ +++KE  L+ HSE+LA+AY L+ S  G  +R+VKNLR+C DCH +  ++S
Sbjct: 656 DTSEVFLDVGEEDKETALYMHSEKLAIAYALISSGKGVTIRIVKNLRMCVDCHHMAMVVS 715

Query: 582 RITKREIVVRDATRYHHFKDG 602
           ++  RE++VRD TR+HHF+ G
Sbjct: 716 KVYNRELIVRDKTRFHHFRHG 736



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/463 (25%), Positives = 214/463 (46%), Gaps = 75/463 (16%)

Query: 22  VKTLHAQIIKLGLH-QYGPLPNTLIDAYGK-CDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           +  +H+Q IK GL   +  L   +I    K    V YA  + +E+PQ     W +++  Y
Sbjct: 51  INQIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGY 110

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
           ++ N  +  +S++  ML +  ++PD F F  L+K      A + GK +    V+  F D 
Sbjct: 111 SRINCSESGVSLYKLML-VHNIKPDGFTFPFLLKGFTKDMALKYGKVLLNHAVIHGFLDS 169

Query: 140 DV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           ++ V+   + +++ CGL N AR +FD       V+W  +LS Y R  R +++  +     
Sbjct: 170 NLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRL----- 224

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP--LVLSSIVGACANFAVLEL 256
                                     FIEM ++  + V P  + L  ++ AC+    L  
Sbjct: 225 --------------------------FIEMEKK-CECVSPNSVTLVLMLSACSKLKDLVG 257

Query: 257 GKQIHGLVIALG-YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
           GK I+   I  G  E  L + NA++DM+A C ++ AA+ +F  M+ +DV+SWTSI+ G A
Sbjct: 258 GKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWTSIVTGFA 317

Query: 316 -------------------------------QHGQAEETLALYDEMVSAGVKPNEVTFVG 344
                                          +  + +E L L+ +M  + VKP+E T V 
Sbjct: 318 NTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKPDEFTMVS 377

Query: 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE 404
           ++ AC+H+G +  G +  K+ I+   I         L+D+  + G++++A+ +   M  +
Sbjct: 378 ILTACAHLGALELG-EWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIFNEMQ-K 435

Query: 405 PDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPEDPSSYI 445
            D+ TW A++    ++ + E    + +++L  S+ P D  +YI
Sbjct: 436 KDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTP-DEITYI 477



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/143 (24%), Positives = 67/143 (46%), Gaps = 3/143 (2%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           + N LID Y KC  V+ A  +  EM ++D  +W +++         ++ +++FS ML   
Sbjct: 409 IGNALIDMYFKCGNVEKAKKIFNEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEAS 468

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNN 158
            + PD   +  ++ AC  +G    GK   +   +      ++     +VD+  + G    
Sbjct: 469 -VTPDEITYIGVMCACTHVGLVAKGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKE 527

Query: 159 ARAVFDSIKLK-NSVSWTAMLSA 180
           A  V  ++ +K NS+ W ++L A
Sbjct: 528 ALEVIMNMPVKPNSIVWGSLLGA 550


>gi|297743264|emb|CBI36131.3| unnamed protein product [Vitis vinifera]
          Length = 550

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 215/513 (41%), Positives = 307/513 (59%), Gaps = 36/513 (7%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           L P +  +ASL+++C +  A + GKQ+HA   L+ F  D V+ + LV++Y  C   ++AR
Sbjct: 71  LTPTYSNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSAR 130

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            +FD I                               P  N+FLW  L+ G   +     
Sbjct: 131 LLFDRI-------------------------------PKHNIFLWNVLIRGYAWNGPYEA 159

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
           A   + +M   G+ + D      ++ ACA  + +E G++IH  V+  G+E  +F+  A++
Sbjct: 160 AVQLYYQMFDYGL-VPDNFTFPFVLKACAALSAIEHGREIHEHVVQTGWEKDVFVGAALI 218

Query: 281 DMYAKCSDIIAAKDIFGRMRRKD---VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           DMYAKC  + +A+++F ++  +D   VVSW ++I G A HG A E L L++EM     KP
Sbjct: 219 DMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITGYAMHGHATEALDLFEEMNRVA-KP 277

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           + +TFVG++ ACSH GL+ +G   F++MI DY I P++QHYTC++DLL  SG LDEA NL
Sbjct: 278 DHITFVGVLSACSHGGLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNL 337

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           I  M   PD   W ALL++CK H N E+G      L+ L+P+D  +Y++LSN+YA A  W
Sbjct: 338 IMQMKVLPDSGVWGALLNSCKIHANVELGEIALERLIELEPDDAGNYVILSNIYAQAGKW 397

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
           + V+K+RKLM+   +KK    S+IE     H F +G+TSHPL DEI+  L  +   MK  
Sbjct: 398 EGVAKLRKLMTDRRLKKSIACSWIEVKNKVHAFLSGDTSHPLSDEIYSELERVGGLMKEA 457

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GY P T SV HD+E  EK   +  HSERLA+A+GL+ + PGT L + KNLR+C DCH+ +
Sbjct: 458 GYSPSTGSVFHDVEDDEKANMVCSHSERLAIAFGLISTPPGTRLLITKNLRICEDCHVAI 517

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K IS+IT+REI VRD  RYHHFKDG CSC D+W
Sbjct: 518 KFISKITEREITVRDVNRYHHFKDGVCSCGDYW 550



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 102/196 (52%), Gaps = 4/196 (2%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S+Y   L+ C   +     K LHAQ+   G      +   L++ Y  CD +  A  L + 
Sbjct: 76  SNYASLLQSCIARKAIKPGKQLHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDR 135

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           +P+ +   W  ++  Y      +  + ++  M     L PD+F F  ++KAC +L A   
Sbjct: 136 IPKHNIFLWNVLIRGYAWNGPYEAAVQLYYQMFDYG-LVPDNFTFPFVLKACAALSAIEH 194

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS---VSWTAMLSA 180
           G+++H   V + +  D  V ++L+DMYAKCG   +AR VFD I ++++   VSW AM++ 
Sbjct: 195 GREIHEHVVQTGWEKDVFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLVVSWNAMITG 254

Query: 181 YARSGRKKDAMEIFEQ 196
           YA  G   +A+++FE+
Sbjct: 255 YAMHGHATEALDLFEE 270


>gi|297598748|ref|NP_001046155.2| Os02g0191200 [Oryza sativa Japonica Group]
 gi|46390971|dbj|BAD16484.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50726401|dbj|BAD34012.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|255670678|dbj|BAF08069.2| Os02g0191200 [Oryza sativa Japonica Group]
          Length = 744

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/568 (36%), Positives = 335/568 (58%), Gaps = 3/568 (0%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           LI    K  ++     LL + P RD +SW S++ AY++AN  ++ +  F TML+   + P
Sbjct: 179 LISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLS-HGIAP 237

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D     +++ AC  L    LG+ +H           + +  +L+DMYAKCG   +A+ VF
Sbjct: 238 DEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVF 297

Query: 164 DSI-KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
           D++ +     SW A++  Y + G    A  +F++  VR++  + ++++G + S    +A 
Sbjct: 298 DALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREAL 357

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
             F+ MRR  +  VD   + +++ ACA+   L+ G+ +H  +     E+ +++  A++DM
Sbjct: 358 LLFMSMRRHDLR-VDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDM 416

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           Y KC  +  A  +F RM ++DV +WT++I G A +G  +  L  + +M   G +PN V++
Sbjct: 417 YMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSY 476

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
           + ++ ACSH  L+ +GR  F  M   Y I P ++HY C++DLL RSG LDEA +L+K MP
Sbjct: 477 IAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMP 536

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462
            +P+   WA++LSAC+ H++ ++    A HLL L+P++   Y+ L N+Y  +  W++ SK
Sbjct: 537 IQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASK 596

Query: 463 VRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPD 522
           +R LM   +VKK  GYS I      H F   + SHP   EI  +L E+   +K  GY P 
Sbjct: 597 IRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPL 656

Query: 523 TSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISR 582
           TS +  D++++EKE+ L  HSE+LA+A+GL+   P   + + KNLRVC DCH  +K+ISR
Sbjct: 657 TSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISR 716

Query: 583 ITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +  REI+VRD +R+HHF++G CSCNDFW
Sbjct: 717 LWNREIIVRDRSRFHHFREGTCSCNDFW 744



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 200/442 (45%), Gaps = 62/442 (14%)

Query: 25  LHAQIIKLGLHQYGP-----LPNTLIDAYGKCDL-VQYAHHLLEEMPQRDHVSWASILTA 78
           LHA++   G     P     L N+L++      L ++YA HL + MP    +   ++   
Sbjct: 18  LHARLTTSGHLLLHPPSARHLLNSLVNCLEPHPLHLRYALHLFDRMPPSTFLFDTALRAC 77

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA------------CGSLGATRLGKQ 126
               + P +   +F  M     ++PD F F  L K             C  L A  L   
Sbjct: 78  SRAGSDPHRPFLLFRRMRRAG-VRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTM 136

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           + +    +PF     V +SL+ MY + GL  +AR  FD I +K++V+WT ++S  A+ G 
Sbjct: 137 LPSA---APF-----VSNSLIHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGM 188

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
             D   +  QAPVR++  WT+L++   ++    +A   F  M   G+   D + + +++ 
Sbjct: 189 LCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLSHGI-APDEVTVIAVLS 247

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD------------------ 288
           ACA    LELG+ +H LV   G  +   +  A++DMYAKC D                  
Sbjct: 248 ACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQ 307

Query: 289 --------------IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
                         +  A+ +F  M  +D++++ S++ G    GQ  E L L+  M    
Sbjct: 308 SWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHD 367

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
           ++ +  T V L+ AC+ +G + +GR L  + IE   +   +   T LLD+  + G +DEA
Sbjct: 368 LRVDNFTVVNLLTACASLGALQQGRAL-HACIEQRLVEADIYLGTALLDMYMKCGRVDEA 426

Query: 395 ENLIKAMPFEPDEPTWAALLSA 416
             + + M  + D  TW A+++ 
Sbjct: 427 TIVFQRMG-KRDVHTWTAMIAG 447



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 33/219 (15%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-DL--------------- 53
           L  CA+ +     ++LH  + + G+     L   LID Y KC D                
Sbjct: 246 LSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPR 305

Query: 54  ----------------VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLA 97
                           V  A  L +EM  RD +++ S++T Y  +   ++ + +F +M  
Sbjct: 306 PQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRR 365

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
            D L+ D+F   +L+ AC SLGA + G+ +HAC        D  + ++L+DMY KCG  +
Sbjct: 366 HD-LRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVD 424

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
            A  VF  +  ++  +WTAM++  A +G  K A+E F Q
Sbjct: 425 EATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQ 463



 Score = 43.5 bits (101), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 77/195 (39%), Gaps = 42/195 (21%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHA I +  +     L   L+D Y KC  V  A  + + M +RD  +W +++      
Sbjct: 392 RALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFN 451

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            + +  +  F  M   D  QP+   + +++ AC            H+C +          
Sbjct: 452 GMGKAALEHFYQMRC-DGFQPNSVSYIAVLTACS-----------HSCLL---------- 489

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSV-----SWTAMLSAYARSGRKKDAMEIFEQA 197
                         N  R  FD +++  ++      +  M+    RSG   +AM++ +  
Sbjct: 490 --------------NEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTM 535

Query: 198 PVR-NLFLWTALVSG 211
           P++ N  +W +++S 
Sbjct: 536 PIQPNAVIWASILSA 550


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  424 bits (1089), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/602 (37%), Positives = 343/602 (56%), Gaps = 44/602 (7%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
            +L+  Y +  L+  A  L ++MP+R+HVS+  +L     A    +   +F  M      
Sbjct: 116 TSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEM------ 169

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNAR 160
            PD  V A      G   A R+  +  A F   P    +VV  ++++  YA+ G  N AR
Sbjct: 170 -PDRDVVAWTAMLSGYCQAGRI-TEARALFDEMP--KRNVVSWTAMISGYAQNGEVNLAR 225

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP---------------------- 198
            +F+ +  +N VSWTAML  Y ++G  +DA E+F   P                      
Sbjct: 226 KLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDA 285

Query: 199 VRNLF---------LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            + +F          W+A++    Q+   ++A  +F EM   GV    P V+S I+  CA
Sbjct: 286 AKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVIS-ILTVCA 344

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
             AVL+ G+++H  ++   ++  +F  +A++ MY KC ++  AK +F     KD+V W S
Sbjct: 345 ALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNS 404

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G AQHG  E+ L ++ +M  AG+ P+ +T++G + ACS+ G V +GR++F SM  + 
Sbjct: 405 MITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNS 464

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            I P  +HY+C++DLL RSG ++EA +LIK MP EPD   W AL+ AC+ HRN E+    
Sbjct: 465 SIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFA 524

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  LL L+P +   Y+LLS++Y S   W+  SK+RK +S   + K PG S+IE+ K  H+
Sbjct: 525 AKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHL 584

Query: 490 FYAGET-SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
           F +G+  +HP    I  +L +LD  +   GY  D S VLHD+++++K   L +HSER AV
Sbjct: 585 FTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAV 644

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           AYGLLK   G  +RV+KNLRVCGDCH  +K+I++IT REI++RDA R+HHFKDG CSC D
Sbjct: 645 AYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRD 704

Query: 609 FW 610
           +W
Sbjct: 705 YW 706



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 175/403 (43%), Gaps = 35/403 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N  I    +   ++ A    E MP R   S+ ++L  Y +  LP   + +F  M + D  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRD-- 78

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLS-PFCDDDVVKSSLVDMYAKCGLPNNAR 160
                  AS       L   R      A  + S PF    V  +SL+  Y + GL  +A 
Sbjct: 79  ------LASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAI 132

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            +F  +  +N VS+T +L     +GR  +A  +F++ P R++  WTA++SG  Q+    +
Sbjct: 133 RLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITE 192

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACAN-----FAVLELGKQIHGLVIALGY------ 269
           A   F EM +  V     ++         N     F V+    ++    + +GY      
Sbjct: 193 ARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHV 252

Query: 270 -----------ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
                      E  +   NA++  + +   + AAK +F +M  +D  +W+++I    Q+ 
Sbjct: 253 EDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNE 312

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
              E L+ + EM+  GV+PN  + + ++  C+ + ++  GR++  +M+        +   
Sbjct: 313 FLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-CSFDMDVFAV 371

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEP-DEPTWAALLSACKHH 420
           + L+ +  + G+LD+A+ +     FEP D   W ++++    H
Sbjct: 372 SALITMYIKCGNLDKAKRVFHT--FEPKDIVMWNSMITGYAQH 412


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/602 (38%), Positives = 343/602 (56%), Gaps = 44/602 (7%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
            +L+  Y +  L+  A  L ++MP+R+HVS+  +L     A    +   +F  M      
Sbjct: 116 TSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEM------ 169

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNAR 160
            PD  V A      G   A R+  +  A F   P    +VV  ++++  YA+ G  N AR
Sbjct: 170 -PDRDVVAWTAMLSGYCQAGRI-TEARALFDEMP--KRNVVSWTAMISGYAQNGEVNLAR 225

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP---------------------- 198
            +F+ +  +N VSWTAML  Y ++G  +DA E+F   P                      
Sbjct: 226 KLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDA 285

Query: 199 VRNLF---------LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            + +F          W+A++    Q+   ++A  +F EM   GV    P V+S I+  CA
Sbjct: 286 AKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVIS-ILTVCA 344

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
             AVL+ G+++H  ++   ++  +F  +A++ MY KC ++  AK +F     KD+V W S
Sbjct: 345 ALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNS 404

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G AQHG  E+ L ++ +M  AG+ P+ +T++G + ACS+ G V +GR++F SM  + 
Sbjct: 405 MITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNS 464

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            I P  +HY+C++DLL RSG ++EA +LIK MP EPD   W AL+ AC+ HRN E+    
Sbjct: 465 SIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVA 524

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  LL L+P +   Y+LLS++Y S   W+  SK+RK +S   + K PG S+IE+ K  H+
Sbjct: 525 AKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHL 584

Query: 490 FYAGET-SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
           F +G+  +HP    I  +L +LD  +   GY  D S VLHD+++++K   L +HSER AV
Sbjct: 585 FTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAV 644

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           AYGLLK   G  +RV+KNLRVCGDCH  +K+I++IT REIV+RDA R+HHFKDG CSC D
Sbjct: 645 AYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIVLRDANRFHHFKDGFCSCRD 704

Query: 609 FW 610
           +W
Sbjct: 705 YW 706



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 176/403 (43%), Gaps = 35/403 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N  I    +   ++ A    E MP R   S+ ++L  Y +  LP   + +F  M + D  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRD-- 78

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLS-PFCDDDVVKSSLVDMYAKCGLPNNAR 160
                  AS       L   R      A  + S PF    V  +SL+  Y + GL  +A 
Sbjct: 79  ------LASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAI 132

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            +F  +  +N VS+T +L     +GR  +A  +F++ P R++  WTA++SG  Q+    +
Sbjct: 133 RLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITE 192

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACAN-----FAVLELGKQIHGLVIALGY------ 269
           A   F EM +  V     ++         N     F V+    ++    + +GY      
Sbjct: 193 ARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHV 252

Query: 270 -----------ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
                      E  +   NA++  + +   + AAK +F +MR +D  +W+++I    Q+ 
Sbjct: 253 EDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNE 312

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
              E L+ + EM+  GV+PN  + + ++  C+ + ++  GR++  +M+        +   
Sbjct: 313 FLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-CSFDMDVFAV 371

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEP-DEPTWAALLSACKHH 420
           + L+ +  + G+LD+A+ +     FEP D   W ++++    H
Sbjct: 372 SALITMYIKCGNLDKAKRVFHT--FEPKDIVMWNSMITGYAQH 412


>gi|302776474|ref|XP_002971398.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
 gi|300160530|gb|EFJ27147.1| hypothetical protein SELMODRAFT_95698 [Selaginella moellendorffii]
          Length = 562

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/588 (36%), Positives = 331/588 (56%), Gaps = 30/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H+++   G H+     N L+  Y KC  +  A  +   + +R  VSW++++ AY   
Sbjct: 5   RRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGAYALH 64

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              Q+ + +F  M    +++P+   F  +  ACG +     G+++HA  + S        
Sbjct: 65  GRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMAS-------- 116

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
                                  +K  N++   A+L+ Y R G  ++A ++F+     + 
Sbjct: 117 ---------------------GELKSSNAILENALLNMYVRCGSLEEARKVFDTMDHPDA 155

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
           F WT++++   ++   ++A   F  M  EG+     + L+S++ ACA    L++GKQIH 
Sbjct: 156 FSWTSMITACTENCELLEALELFHRMNLEGIPPTS-VTLASVLNACACSGALKVGKQIHS 214

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            + A G+ S +    A++DMYAKC  +  +  +F  M  ++ VSWT++I   AQHGQ +E
Sbjct: 215 RLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDE 274

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L+ EM   G+  +  TF+ ++ ACSH GL+ +  + F SM+EDY I P+  HY   L
Sbjct: 275 ALELFKEMNLEGMVADATTFICVLRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRAL 334

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D + R+G L +AE LI +MPF P+  TW  LL+AC+ H   E  T+VA  L  L PED  
Sbjct: 335 DTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQAERATKVAELLSKLAPEDSM 394

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y LL NVYA+   +    +VRK M+   +KK PG S+IE     H F AG+ +HP +DE
Sbjct: 395 AYTLLGNVYAATGRYGDQMRVRKGMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDE 454

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I   L +L   M+  GYVP+T  VLH + ++EKE+ +  HSE+LA+A+GL+ + PGT L 
Sbjct: 455 ILLELEKLGGRMREAGYVPNTKDVLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLL 514

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +VKNLRVC DCH   K+I++I +R IVVRD  R+HHF+DG+CSC D+W
Sbjct: 515 IVKNLRVCSDCHAATKVIAKIMRRRIVVRDTHRFHHFEDGQCSCKDYW 562



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 6/204 (2%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           +E G++IH  +   G+       N +V MYAKC  +  A+ IF  +  + VVSW+++I  
Sbjct: 1   MEEGRRIHSRLSLCGFHRATIAQNGLVSMYAKCGCLDEARAIFNGILERTVVSWSAMIGA 60

Query: 314 TAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFK-SMIEDYGI 371
            A HG+ +E L L+  M + G V+PN +TF G+  AC  +  + +GR++   +M      
Sbjct: 61  YALHGRGQEALLLFHRMRNDGRVEPNAMTFTGVFNACGVIEDLEQGREIHALAMASGELK 120

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVA- 430
           + +      LL++  R G L+EA  +   M   PD  +W ++++AC    N E+   +  
Sbjct: 121 SSNAILENALLNMYVRCGSLEEARKVFDTMD-HPDAFSWTSMITACT--ENCELLEALEL 177

Query: 431 NHLLSLKPEDPSSYILLSNVYASA 454
            H ++L+   P+S  L S + A A
Sbjct: 178 FHRMNLEGIPPTSVTLASVLNACA 201



 Score = 47.4 bits (111), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 43/229 (18%), Positives = 87/229 (37%), Gaps = 37/229 (16%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K +H+++   G H        L+D Y KC  ++ +  +   M  R+ 
Sbjct: 197 LNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNS 256

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----- 124
           VSW +++ A  Q     + + +F  M  L+ +  D   F  +++AC   G  +       
Sbjct: 257 VSWTAMIAALAQHGQGDEALELFKEM-NLEGMVADATTFICVLRACSHAGLIKESLEFFH 315

Query: 125 ----------KQVHACFVLS------------------PFCDDDVVKSSLVD---MYAKC 153
                      + H C  L                   PF  + +   +L++   ++++ 
Sbjct: 316 SMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETLTWKTLLNACRIHSQA 375

Query: 154 GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
                   +   +  ++S+++T + + YA +GR  D M + +    R L
Sbjct: 376 ERATKVAELLSKLAPEDSMAYTLLGNVYAATGRYGDQMRVRKGMTDRGL 424


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/622 (36%), Positives = 345/622 (55%), Gaps = 35/622 (5%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL--VQYAHHLLEEMPQRDHVSWASILTAY 79
           +K +HA  ++ G  Q   +  TL+  Y       + +A  + E +P  +   +  I+   
Sbjct: 46  LKQVHAVALRTGHFQDHYVSGTLVKCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGC 105

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            Q N P K I  +  M+ +   +P+ F + +L KAC +  A   G QVHA  +      D
Sbjct: 106 LQNNEPCKAICCYYKMM-IAHARPNKFTYPTLFKACTAAEAAEEGVQVHAHVIKQGLSGD 164

Query: 140 DVVKSS-------------------------------LVDMYAKCGLPNNARAVFDSIKL 168
             ++S+                               ++D Y KCG    A+ +F S++ 
Sbjct: 165 VHIRSAGIQMYGSFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMED 224

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228
           KN  SW  M+S  A+ G  ++A E+F +   +N   W+A++ G ++     +A   F  M
Sbjct: 225 KNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEISWSAMIDGYIKGGYYKEALEVFNVM 284

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
           +RE +      VLSS++ ACAN   L+ G+ IH  V          +  A+VDMYAKC  
Sbjct: 285 QREEIR-PRKFVLSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGR 343

Query: 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
           +  A D+F +M +K+V +W ++I G   HG+AE+ + L+ +M     +PN +T +G++ A
Sbjct: 344 LDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSA 403

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           C+H G+V +G ++F SM E YGI P ++HY C++DLL R+G L EAE ++ +MP EP   
Sbjct: 404 CAHSGMVDEGLRIFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAA 463

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
            W ALL AC+ H + E+G RV   LL L+P++   Y LLSN+YA A  W  V+ VRKLM 
Sbjct: 464 VWGALLGACRKHGDVELGERVGKILLELEPQNSGRYALLSNIYARAGRWDDVANVRKLMK 523

Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH 528
              VK   G S I+F    H F  G+ SHP    I+ +L  +   +K  G+ P+TS VL 
Sbjct: 524 ERGVKTSTGISMIDFDGVVHEFKMGDGSHPQMKNIYLMLKNMIKRLKMEGFSPNTSQVLF 583

Query: 529 DMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREI 588
           D+E++EKE +L +HSE+LA+A+GL+ + PGT + VVKNLR+C DCH   K+IS++  REI
Sbjct: 584 DIEEEEKEAELQYHSEKLAIAFGLINTKPGTTIHVVKNLRMCEDCHSAFKLISQVYDREI 643

Query: 589 VVRDATRYHHFKDGKCSCNDFW 610
           +VRD  RYHHFK G CSC DFW
Sbjct: 644 IVRDRARYHHFKTGTCSCKDFW 665


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/605 (37%), Positives = 356/605 (58%), Gaps = 43/605 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L++C++ +     K LH  ++K G      +   L+  Y KC  V  A  L   M    H
Sbjct: 313 LKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFS-MADAAH 371

Query: 70  --VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
             V+W +++  + Q N  +K + +F  M + + ++P+HF +++++        + L  Q+
Sbjct: 372 NVVTWTAMIGGFVQNNNNEKAVDLFCQM-SREGVRPNHFTYSTVLAG----KPSSLLSQL 426

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           HA           ++K+     Y K  +P+ A               TA+L AY ++G  
Sbjct: 427 HA----------QIIKA----YYEK--VPSVA---------------TALLDAYVKTGNV 455

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
            ++  +F   P +++  W+A+++GL Q+R+   A   FI++ +EGV   +    SS++ A
Sbjct: 456 VESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVK-PNEYTFSSVINA 514

Query: 248 CAN-FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           C++  A +E GKQIH   +  G  + L +S+A++ MY+K  +I +A+ +F R   +D+VS
Sbjct: 515 CSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVS 574

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W S+I G  QHG A++ L ++  M + G+  ++VTF+G++ AC+H GLV +G K F  MI
Sbjct: 575 WNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMI 634

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT-WAALLSACKHHRNTEM 425
           +DY I   ++HY+C++DL SR+G  D+A ++I  MPF P  PT W  LL+AC+ HRN E+
Sbjct: 635 KDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPF-PASPTIWRTLLAACRVHRNLEL 693

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G   A  L+SL+P D   Y+LLSN++A A  W+  + VRKLM   +VKKE G S+IE   
Sbjct: 694 GKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKN 753

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
               F AG+ SHP  D ++  L EL  ++K  GY PDT+ V HD+E++ KE  L  HSER
Sbjct: 754 RIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSER 813

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+AYGL+   PG  +++ KNLR+CGDCH V+++IS I +R ++VRD+ R+HHFK G CS
Sbjct: 814 LAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCS 873

Query: 606 CNDFW 610
           C  +W
Sbjct: 874 CGGYW 878



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 118/462 (25%), Positives = 211/462 (45%), Gaps = 52/462 (11%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+VC      +  + +H Q +K G  +   +  +L+D Y K +  +    + +EM  ++ 
Sbjct: 111 LKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNV 170

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S+L+ Y +  L  + I + + M  ++ + P+ F FA+++ A         G QVHA
Sbjct: 171 VSWTSLLSGYARNGLNDEVIHLINQM-QMEGVNPNGFTFATVLGALADESIIEGGVQVHA 229

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V + F     V ++L+ MY K  +  +A AVFDS+ +++SV+W  M+  YA  G   +
Sbjct: 230 MIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLE 289

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
             ++F +                               MR  GV +    V  + +  C+
Sbjct: 290 GFQMFHR-------------------------------MRLAGVKL-SRTVFCTALKLCS 317

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-DVVSWT 308
               L   KQ+H  V+  GYE    I  A++  Y+KCS +  A  +F       +VV+WT
Sbjct: 318 QQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWT 377

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++I G  Q+   E+ + L+ +M   GV+PN  T+  +        L GK   L   +   
Sbjct: 378 AMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTV--------LAGKPSSLLSQLHAQ 429

Query: 369 -----YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
                Y   PS+   T LLD   ++G++ E+  +  ++P   D   W+A+L+     R++
Sbjct: 430 IIKAYYEKVPSVA--TALLDAYVKTGNVVESARVFYSIP-AKDIVAWSAMLTGLAQTRDS 486

Query: 424 EMGTRVANHLL--SLKPEDPSSYILLSNVYASAAMWQHVSKV 463
           E    V   L+   +KP + +   +++   +SAA  +H  ++
Sbjct: 487 EKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQI 528



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 185/407 (45%), Gaps = 41/407 (10%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA I+K G      + N LI  Y K ++V  A  + + M  RD V+W  ++  Y     
Sbjct: 227 VHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGF 286

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
             +   +F  M  L  ++    VF + +K C         KQ+H                
Sbjct: 287 YLEGFQMFHRM-RLAGVKLSRTVFCTALKLCSQQRELNFTKQLH---------------- 329

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA-PVRNLF 203
                   CG+  N       I+       TA++  Y++     +A ++F  A    N+ 
Sbjct: 330 --------CGVVKNGYEFAQDIR-------TALMVTYSKCSSVDEAFKLFSMADAAHNVV 374

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            WTA++ G VQ+ N   A   F +M REGV   +    S+++    +     L  Q+H  
Sbjct: 375 TWTAMIGGFVQNNNNEKAVDLFCQMSREGVR-PNHFTYSTVLAGKPS----SLLSQLHAQ 429

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           +I   YE    ++ A++D Y K  +++ +  +F  +  KD+V+W++++ G AQ   +E+ 
Sbjct: 430 IIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKA 489

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYAC-SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
           + ++ ++V  GVKPNE TF  +I AC S    V  G+++  + ++  G + +L   + LL
Sbjct: 490 MEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKS-GKSNALCVSSALL 548

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            + S+ G+++ AE +      E D  +W ++++    H + +    V
Sbjct: 549 TMYSKKGNIESAEKVFTRQE-ERDIVSWNSMITGYGQHGDAKKALEV 594



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/395 (24%), Positives = 180/395 (45%), Gaps = 34/395 (8%)

Query: 30  IKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTI 89
           IK  LH +G L +  +         +YAH L +E P +D   +  +L  +++ N  ++ +
Sbjct: 30  IKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREAL 89

Query: 90  SIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM 149
            +F  + +   L  D    +  +K CG L    +G+QVH   + S F +D  V +SLVDM
Sbjct: 90  HLFKDLHS-SGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDM 148

Query: 150 YAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALV 209
           Y K                               +   +D   IF++  ++N+  WT+L+
Sbjct: 149 YMK-------------------------------TEDFEDGRGIFDEMGIKNVVSWTSLL 177

Query: 210 SGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY 269
           SG  ++    +  +   +M+ EGV+  +    ++++GA A+ +++E G Q+H +++  G+
Sbjct: 178 SGYARNGLNDEVIHLINQMQMEGVN-PNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDE 329
           E   F+ NA++ MY K   +  A+ +F  M  +D V+W  +I G A  G   E   ++  
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389
           M  AGVK +   F   +  CS    +   ++L   ++++ G   +    T L+   S+  
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKN-GYEFAQDIRTALMVTYSKCS 355

Query: 390 HLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
            +DEA  L        +  TW A++     + N E
Sbjct: 356 SVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNE 390


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  423 bits (1088), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/604 (35%), Positives = 339/604 (56%), Gaps = 33/604 (5%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L+ L VC       ++K LH    + GL     + N  I AY +C  +  +  + + M  
Sbjct: 311 LNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDT 370

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           +   SW ++L  Y Q + P+K + ++  M     L PD F   SL+ AC  + +   G++
Sbjct: 371 KTVSSWNALLCGYAQNSDPRKALDLYLQMTD-SGLDPDWFTIGSLLLACSRMKSLHYGEE 429

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +H   + +    D  +  SL+ +Y  CG P  A+ +FD ++                   
Sbjct: 430 IHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEH------------------ 471

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
                        R+L  W  +++G  Q+    +A   F +M  +G+   + + +  + G
Sbjct: 472 -------------RSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYE-IAIMCVCG 517

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           AC+  + L LGK++H   +       +F+S++I+DMYAK   I  ++ IF R+R KDV S
Sbjct: 518 ACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVAS 577

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W  II G   HG+ +E L L+++M+  G+KP++ TF G++ ACSH GLV  G + F  M+
Sbjct: 578 WNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQML 637

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             + I P L+HYTC++D+L R+G +D+A  LI+ MP +PD   W++LLS+C+ H N  +G
Sbjct: 638 NLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLG 697

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
            +VAN LL L+PE P +Y+L+SN++A +  W  V +VR  M  + ++K+ G S+IE G  
Sbjct: 698 EKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGK 757

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            H F  G+   P  +E+ E    L+ ++   GY PDT SVLHD+E+++K   L  HSE+L
Sbjct: 758 VHNFLIGDEMLPELEEVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKL 817

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+++GLL +  G  +RV KNLR+CGDCH   K IS++  R+IVVRD  R+HHF+DG CSC
Sbjct: 818 AISFGLLNTAKGLPVRVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSC 877

Query: 607 NDFW 610
            D+W
Sbjct: 878 GDYW 881



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 131/535 (24%), Positives = 219/535 (40%), Gaps = 81/535 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H    K+ L     + N LI  YGKC LV+ A  + E MP+R+ VSW SI+  +++ 
Sbjct: 121 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSEN 180

Query: 83  NLPQKTISIFSTML-ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
              Q++ + F  ML   +   PD     +++  C        G  VH   V     ++ +
Sbjct: 181 GFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELM 240

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V +SL+DMY+KC   + A+ +FD    KN VS                            
Sbjct: 241 VNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVS---------------------------- 272

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLSSIVGACANFAVLELGKQI 260
              W +++ G  +  +    FY   +M+ E   +  D   + +++  C   + L+  K++
Sbjct: 273 ---WNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKEL 329

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG     G +S   ++NA +  Y +C  + +++ +F  M  K V SW +++ G AQ+   
Sbjct: 330 HGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDP 389

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACS-----HVGLVGKGRKLFKSMIEDYGITPS- 374
            + L LY +M  +G+ P+  T   L+ ACS     H G    G  L   +  D  I  S 
Sbjct: 390 RKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISL 449

Query: 375 LQHYTC---------LLDLL---------------SRSGHLDEAENLIKAMPFEPDEPTW 410
           L  Y C         L D +               S++G  DEA NL + M  +  +P  
Sbjct: 450 LSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYE 509

Query: 411 AALL---SACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
            A++    AC       +G  +  H  +LK        + S++    A    +   +++ 
Sbjct: 510 IAIMCVCGACSQLSALRLGKEL--HCFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIF 567

Query: 468 SVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPD 522
             +  K    ++ I  G G H    G     L  E+FE       +M R G  PD
Sbjct: 568 DRLREKDVASWNVIIAGYGIH----GRGKEAL--ELFE-------KMLRLGLKPD 609



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 183/393 (46%), Gaps = 48/393 (12%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   +I  Y  C     +  + +++ +++   W +I++AY +  L +  +SIFS ++++ 
Sbjct: 36  LNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVT 95

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           + +PD+F    ++KAC  L    LG+ +H          D  V ++L+ MY KCGL   A
Sbjct: 96  EHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEA 155

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
             VF+ +  +N VSW +++  ++ +G  +++   F +  V                    
Sbjct: 156 VKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGE------------------ 197

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
               SF+          D   L +++  CA    +E G  +HGL + LG    L ++N++
Sbjct: 198 ---ESFVP---------DVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSL 245

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS--AGVKP 337
           +DMY+KC  +  A+ +F +  +K++VSW S+I G A+      T  L  +M +  A +K 
Sbjct: 246 IDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKA 305

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT--PSLQHYTCLLDLL----SRSGHL 391
           +E T + ++  C         R   +S+ E +G +    LQ    + +      +R G L
Sbjct: 306 DEFTILNVLPVCLE-------RSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGAL 358

Query: 392 DEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
             +E +   M  +    +W ALL  C + +N++
Sbjct: 359 CSSERVFDLMDTKT-VSSWNALL--CGYAQNSD 388



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 137/293 (46%), Gaps = 39/293 (13%)

Query: 111 LVKACGSLGATRLGKQVHACFVLSP-FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           L++ACG      +G+++H     S  FC+D V+ + ++ MY+ CG P+++R V       
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMV------- 56

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI--DAFYSFIE 227
                                   F++   +NLF W A+VS    +RNE+  DA   F E
Sbjct: 57  ------------------------FDKLRRKNLFQWNAIVSAY--TRNELFEDAMSIFSE 90

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           +        D   L  ++ ACA    L LG+ IHG+   +   S +F+ NA++ MY KC 
Sbjct: 91  LISVTEHKPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCG 150

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV--SAGVKPNEVTFVGL 345
            +  A  +F  M  +++VSW SII G +++G  +E+   + EM+       P+  T V +
Sbjct: 151 LVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTV 210

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           +  C+    + KG  +    ++  G+   L     L+D+ S+   L EA+ L 
Sbjct: 211 LPVCAGEEDIEKGMAVHGLAVK-LGLNEELMVNNSLIDMYSKCRFLSEAQLLF 262



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 102/239 (42%), Gaps = 49/239 (20%)

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA-IVDMYAKCSDIIAAKDIFGRM 299
           +  ++ AC     +E+G+++H +V A       F+ N  I+ MY+ C     ++ +F ++
Sbjct: 1   MGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKL 60

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV-KPNEVTFVGLIYACSHV------ 352
           RRK++  W +I+    ++   E+ ++++ E++S    KP+  T   +I AC+ +      
Sbjct: 61  RRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLG 120

Query: 353 -----------------------------GLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
                                        GLV +  K+F+ M E      +L  +  ++ 
Sbjct: 121 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPE-----RNLVSWNSIIC 175

Query: 384 LLSRSGHLDEAENLIKAM-----PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
             S +G L E+ N  + M      F PD  T   +L  C    + E G  V  H L++K
Sbjct: 176 GFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAV--HGLAVK 232


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/618 (34%), Positives = 341/618 (55%), Gaps = 35/618 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDL--VQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           LHA +++ G  Q   +   L+  Y         +A  +   +P  +   W  ++    + 
Sbjct: 52  LHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLEN 111

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           N   K I  +  M+     +P+ F + +L KAC    A + G+Q+H   V      D  +
Sbjct: 112 NKLFKAIYFYGRMVI--DARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHI 169

Query: 143 KSSLVDMYA------------------------------KCGLPNNARAVFDSIKLKNSV 172
           KS+ + MYA                              KCG+   A+ +F  + +KN  
Sbjct: 170 KSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIG 229

Query: 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
           SW  M++  A+ G   DA ++F++   R+   W+++V G + +    +A   F +M+RE 
Sbjct: 230 SWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREE 289

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
                  +LSS++ AC+N   ++ G+ +H  +     +    +  A++DMYAKC  +   
Sbjct: 290 TR-PGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMG 348

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
            ++F  M+ +++ +W ++I G A HG+AE+ L L+ ++    +KPN +T VG++ AC+H 
Sbjct: 349 WEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHA 408

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           G V KG ++F++M E YG+ P L+HY C++DLL RSG   EAE+LI +MP +P+   W A
Sbjct: 409 GFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGA 468

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
           LL AC+ H N ++  RV   LL L+P++   Y+LLSN+YA    +  VSK+RKLM    +
Sbjct: 469 LLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKNRGI 528

Query: 473 KKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQ 532
           K  PG S ++     H F  G+ SHP   EI+  L  +   ++  G+ PDTS VL D+++
Sbjct: 529 KTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDE 588

Query: 533 KEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRD 592
           +EKE  + +HSE+LA+A+GL+ ++PG  + +VKNLRVC DCH   K+IS+I  REI+VRD
Sbjct: 589 EEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRD 648

Query: 593 ATRYHHFKDGKCSCNDFW 610
             RYHHFK+G CSC DFW
Sbjct: 649 RVRYHHFKNGTCSCKDFW 666


>gi|449439619|ref|XP_004137583.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
 gi|449487109|ref|XP_004157499.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Cucumis sativus]
          Length = 642

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/642 (35%), Positives = 354/642 (55%), Gaps = 37/642 (5%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLI--DAYGKCDLVQYAHHLL 61
           S  LH L + ++ +   TVK + A I K  L+ Y  +   L+   A    D + YA  L 
Sbjct: 3   SRELHCLALFSKCKSLRTVKQIQALIFKTCLNSYPLVSGKLLLHCAVTLPDSLHYARRLF 62

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
            ++   D   + +++   + ++ P   + +F  M       PD F FA L+KA  +  A 
Sbjct: 63  LDIRNPDVFMYNTLIRGLSDSDTPSNALQLFVEMRRKSVALPDSFSFAFLLKAAANCRAL 122

Query: 122 RLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
             G Q+H C  +    D  + V ++L+ MYA+C     AR VFD +   N V+W A+++A
Sbjct: 123 TNGLQLH-CLAVGYGLDSHLFVGTTLISMYAECACLVFARKVFDEMIEPNIVAWNAIVAA 181

Query: 181 YARSGRKKDAMEIFEQAPVRNL----------------------FL---------WTALV 209
             R    KDA ++F   P+RNL                      F+         W+ ++
Sbjct: 182 CFRCEGVKDAEQVFRCMPIRNLTSWNIMLAGYTKAGELQLAREVFMKMPLKDDVSWSTMI 241

Query: 210 SGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY 269
            G   + N  DAF  F E+RREG+   + + L+ ++ ACA     E G+ +HG V   G+
Sbjct: 242 VGFAHNGNFNDAFAFFREVRREGMR-PNEVSLTGVLSACAQAGAFEFGRILHGFVEKSGF 300

Query: 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDE 329
              + ++NA++D Y+KC ++  A+ +F  M R+  VSWT++I G A HG  EE + L++E
Sbjct: 301 LQIISVNNALIDTYSKCGNLDMARLVFDNMLRRSAVSWTAMIAGMAMHGYGEEAIRLFNE 360

Query: 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389
           M  + +KP+ +TF+ ++YACSH GLV  G   F  M+  YGI P ++HY C++DL  R+G
Sbjct: 361 MEESNIKPDSITFISILYACSHAGLVDLGCSYFSRMVNTYGIEPVIEHYGCMVDLYGRAG 420

Query: 390 HLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSN 449
            L +A + +  MP  P++  W  LL AC  H N  +  +V   L  L PE+   ++LLSN
Sbjct: 421 KLQQAYDFVCQMPISPNDIVWRTLLGACSIHGNLYLAGQVKRQLSELDPENSGDHVLLSN 480

Query: 450 VYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTE 509
           +YA A  W+ V+ +R+ M+   +KK PG+S IE  +  + F AGE  + +  E  + L E
Sbjct: 481 IYAVAGKWKDVAALRRSMTHQRLKKTPGWSMIEVNRIIYSFVAGEKQNDIAVEAHQKLRE 540

Query: 510 LDAEMK-RRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLR 568
           + + ++   GYVP+  SVLHD+E +EKE  +  HSE+LAVA+G+ K   G  +RVVKNLR
Sbjct: 541 IMSRLRIEGGYVPEVGSVLHDIEVEEKEDSVSQHSEKLAVAFGMAKLPRGRAIRVVKNLR 600

Query: 569 VCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +C DCH VMK+IS++ + EIVVRD +R+H F  G CSC D+W
Sbjct: 601 ICRDCHTVMKLISKVYEVEIVVRDRSRFHSFTHGSCSCRDYW 642


>gi|356511287|ref|XP_003524358.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 674

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 224/612 (36%), Positives = 351/612 (57%), Gaps = 57/612 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKC--------DLVQYAHH--------------L 60
           ++LHA +I+LG H      N L++ Y K         +  Q  H+              L
Sbjct: 96  QSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKL 155

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
            + MP RD VSW +++    Q  + ++ +++   M   + L+PD F  +S++        
Sbjct: 156 FDRMPVRDVVSWNTVIAGNAQNGMYEEALNMVKEM-GKENLRPDSFTLSSILPIFTEHAN 214

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
              GK++H   +   F  D  + SSL+DMYAKC             +++ SV    +LS 
Sbjct: 215 VTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKC------------TQVELSVCAFHLLS- 261

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
                  +DA+             W ++++G VQ+         F  M +E V  +  + 
Sbjct: 262 ------NRDAIS------------WNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQ-VS 302

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR-- 298
            SS++ ACA+   L LGKQ+H  +I LG++   FI+++++DMYAKC +I  A+ IF +  
Sbjct: 303 FSSVIPACAHLTALNLGKQLHAYIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIE 362

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
           M  +D+VSWT+II+G A HG A + ++L++EM+  GVKP  V F+ ++ ACSH GLV +G
Sbjct: 363 MCDRDMVSWTAIIMGCAMHGHALDAVSLFEEMLVDGVKPCYVAFMAVLTACSHAGLVDEG 422

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
            K F SM  D+G+ P L+HY  + DLL R+G L+EA + I  M  EP    W+ LL+AC+
Sbjct: 423 WKYFNSMQRDFGVAPGLEHYAAVADLLGRAGRLEEAYDFISNMGEEPTGSVWSTLLAACR 482

Query: 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGY 478
            H+N E+  +V N +L + P +  +++++SN+Y++A  W+  +K+R  M    +KK P  
Sbjct: 483 AHKNIELAEKVVNKILLVDPGNMGAHVIMSNIYSAAQRWRDAAKLRVRMRKTGLKKTPAC 542

Query: 479 SYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQ 538
           S+IE G   H F AG+ SHP  D+I E L  L  +M++ GYV DT+ VLHD++++ K   
Sbjct: 543 SWIEVGNKVHTFLAGDKSHPYYDKINEALNILLEQMEKEGYVLDTNEVLHDVDEEHKRDL 602

Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
           L  HSERLA+A+G++ +  GT +RV+KN+RVC DCH  +K +++I  REI+VRD +R+HH
Sbjct: 603 LRTHSERLAIAFGIISTTSGTTIRVIKNIRVCVDCHTAIKFMAKIVGREIIVRDNSRFHH 662

Query: 599 FKDGKCSCNDFW 610
           FK+G CSC D+W
Sbjct: 663 FKNGSCSCGDYW 674



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 187/382 (48%), Gaps = 17/382 (4%)

Query: 41  PNTLIDAYGKCDLVQYAHHLLEEMPQRDH-VSWASILTAYNQANLPQKTISIFSTMLALD 99
           PNT++     C + Q    +++      H ++W  I+  Y    L + +++ F+ + +  
Sbjct: 15  PNTVVPT---CHVKQLHAQIVKTTKATPHSLAWICIIKCYASHGLLRHSLASFNLLRSFG 71

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            + PD  +F SL++A        L + +HA  +   F  D    ++L++MY+K     + 
Sbjct: 72  -ISPDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMYSKFHPHLSP 130

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
              F   +  ++  ++  + +  +         +F++ PVR++  W  +++G  Q+    
Sbjct: 131 LHEFPQARHNHNNKYSVKIDSVRK---------LFDRMPVRDVVSWNTVIAGNAQNGMYE 181

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           +A     EM +E +   D   LSSI+      A +  GK+IHG  I  G++  +FI +++
Sbjct: 182 EALNMVKEMGKENLR-PDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSL 240

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           +DMYAKC+ +  +   F  +  +D +SW SII G  Q+G+ ++ L  +  M+   VKP +
Sbjct: 241 IDMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQ 300

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           V+F  +I AC+H+  +  G++L   +I   G   +    + LLD+ ++ G++  A  +  
Sbjct: 301 VSFSSVIPACAHLTALNLGKQLHAYIIR-LGFDDNKFIASSLLDMYAKCGNIKMARYIFN 359

Query: 400 AMPF-EPDEPTWAALLSACKHH 420
            +   + D  +W A++  C  H
Sbjct: 360 KIEMCDRDMVSWTAIIMGCAMH 381



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/192 (33%), Positives = 101/192 (52%), Gaps = 3/192 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L +   H      K +H   I+ G  +   + ++LID Y KC  V+ +      +  RD 
Sbjct: 206 LPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLIDMYAKCTQVELSVCAFHLLSNRDA 265

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW SI+    Q     + +  F  ML  +K++P    F+S++ AC  L A  LGKQ+HA
Sbjct: 266 ISWNSIIAGCVQNGRFDQGLGFFRRMLK-EKVKPMQVSFSSVIPACAHLTALNLGKQLHA 324

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL--KNSVSWTAMLSAYARSGRK 187
             +   F D+  + SSL+DMYAKCG    AR +F+ I++  ++ VSWTA++   A  G  
Sbjct: 325 YIIRLGFDDNKFIASSLLDMYAKCGNIKMARYIFNKIEMCDRDMVSWTAIIMGCAMHGHA 384

Query: 188 KDAMEIFEQAPV 199
            DA+ +FE+  V
Sbjct: 385 LDAVSLFEEMLV 396



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 115/272 (42%), Gaps = 56/272 (20%)

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
           SF  +R  G+   D  +  S++ A   F    L + +H  VI LG+   L+ +NA+++MY
Sbjct: 63  SFNLLRSFGIS-PDRHLFPSLLRASTLFKHFNLAQSLHAAVIRLGFHFDLYTANALMNMY 121

Query: 284 AK----------------------CSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           +K                         I + + +F RM  +DVVSW ++I G AQ+G  E
Sbjct: 122 SKFHPHLSPLHEFPQARHNHNNKYSVKIDSVRKLFDRMPVRDVVSWNTVIAGNAQNGMYE 181

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF---------------KSMI 366
           E L +  EM    ++P+  T   ++   +    V KG+++                 S+I
Sbjct: 182 EALNMVKEMGKENLRPDSFTLSSILPIFTEHANVTKGKEIHGYAIRHGFDKDVFIGSSLI 241

Query: 367 EDYGITPSLQHYTCLLDLLS---------------RSGHLDEAENLIKAMPFEPDEP--- 408
           + Y     ++   C   LLS               ++G  D+     + M  E  +P   
Sbjct: 242 DMYAKCTQVELSVCAFHLLSNRDAISWNSIIAGCVQNGRFDQGLGFFRRMLKEKVKPMQV 301

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++++++ AC H     +G ++  +++ L  +D
Sbjct: 302 SFSSVIPACAHLTALNLGKQLHAYIIRLGFDD 333


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/628 (34%), Positives = 346/628 (55%), Gaps = 44/628 (7%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           T++T+H++II   L     L   L+ AY     V  A  + +E+P+R+ +    ++ +Y 
Sbjct: 57  TLRTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYV 116

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
                 + + +F TM   + ++PDH+ F  ++KAC   G   +G+++H            
Sbjct: 117 NNGFYGEGVKVFGTMCGCN-VRPDHYTFPCVLKACSCSGTIVIGRKIHGSATKVGLSSTL 175

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP-- 198
            V + LV MY KCG  + AR V D +  ++ VSW +++  YA++ R  DA+E+  +    
Sbjct: 176 FVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESV 235

Query: 199 --------------------------VRNLFL---------WTALVSGLVQSRNEIDAFY 223
                                     V+++F          W  ++   +++   ++A  
Sbjct: 236 KISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVE 295

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            +  M  +G +  D + ++S++ AC + + L LGK+IHG +        L + NA++DMY
Sbjct: 296 LYSRMEADGFE-PDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMY 354

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           AKC  +  A+D+F  M+ +DVVSWT++I      G+  + +AL+ ++  +G+ P+ + FV
Sbjct: 355 AKCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFV 414

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
             + ACSH GL+ +GR  FK M + Y ITP L+H  C++DLL R+G + EA   I+ M  
Sbjct: 415 TTLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSM 474

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
           EP+E  W ALL AC+ H +T++G   A+ L  L PE    Y+LLSN+YA A  W+ V+ +
Sbjct: 475 EPNERVWGALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNI 534

Query: 464 RKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDT 523
           R +M    +KK PG S +E  +  H F  G+ SHP  DEI+  L  L  +MK  GYVPD+
Sbjct: 535 RNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDS 594

Query: 524 SSVLHDMEQKEKERQLFWHSERLAVAYGLLKSV-----PGTVLRVVKNLRVCGDCHIVMK 578
            S LHD+E+++KE  L  HSE+LA+ + L+ +          +R+ KNLR+CGDCH+  K
Sbjct: 595 ESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAK 654

Query: 579 MISRITKREIVVRDATRYHHFKDGKCSC 606
           +IS+IT REI++RD  R+H F+ G CSC
Sbjct: 655 LISQITSREIIIRDTNRFHVFRFGVCSC 682


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/601 (36%), Positives = 333/601 (55%), Gaps = 32/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +R CA        K +H   +K G+     + + L D Y KC  +  A  + EEMP +D 
Sbjct: 48  IRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDE 107

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++  Y++    ++ +  F  M+  +++  D  V  S + ACG+L A + G+ VH+
Sbjct: 108 VSWTAMIDGYSKIGEFEEALLAFKKMID-EEVTIDQHVLCSTLGACGALKACKFGRSVHS 166

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V   F  D  V ++L DMY+K G   +A  VF                          
Sbjct: 167 SVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGI------------------------ 202

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
                  +  RN+  +T L+ G V++         F+E+RR+G++  +    SS++ ACA
Sbjct: 203 ------DSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIE-PNEFTFSSLIKACA 255

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           N A LE G Q+H  V+ + ++   F+S+ +VDMY KC  +  A   F  +     ++W S
Sbjct: 256 NQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNS 315

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           ++    QHG  ++ + +++ MV  GVKPN +TF+ L+  CSH GLV +G   F SM + Y
Sbjct: 316 LVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTY 375

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G+ P  +HY+C++DLL R+G L EA+  I  MPFEP+   W + L AC+ H + EMG   
Sbjct: 376 GVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLA 435

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  L+ L+P++  + +LLSN+YA+   W+ V  VR  M    VKK PGYS+++ G  +H+
Sbjct: 436 AEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHV 495

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F A + SHP K  I+E L  L  ++K  GYVP T SV  DM+   KE+ L  HSER+AVA
Sbjct: 496 FGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVA 555

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + L+    G  + V KNLRVC DCH  +K IS++T R+I+VRD +R+HHF DG CSC D+
Sbjct: 556 FALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDY 615

Query: 610 W 610
           W
Sbjct: 616 W 616



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 112/359 (31%), Positives = 189/359 (52%), Gaps = 38/359 (10%)

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           MPQR+ VSW ++++  +Q +   + I  F  M    ++ P  F F+S ++AC SLG+  +
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLGSIEM 59

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           GKQ+H   +      +  V S+L DMY+KCG   +A  VF+ +  K+ VSWTAM+  Y++
Sbjct: 60  GKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK 119

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            G        FE+                        A  +F +M  E V I D  VL S
Sbjct: 120 IGE-------FEE------------------------ALLAFKKMIDEEVTI-DQHVLCS 147

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG-RMRRK 302
            +GAC      + G+ +H  V+ LG+ES +F+ NA+ DMY+K  D+ +A ++FG     +
Sbjct: 148 TLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECR 207

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           +VVS+T +I G  +  Q E+ L+++ E+   G++PNE TF  LI AC++   + +G +L 
Sbjct: 208 NVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLH 267

Query: 363 KSMIE-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
             +++ ++   P +   + L+D+  + G L++A      +  +P E  W +L+S    H
Sbjct: 268 AQVMKINFDEDPFVS--SILVDMYGKCGLLEQAIQAFDEIG-DPTEIAWNSLVSVFGQH 323



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 140/298 (46%), Gaps = 38/298 (12%)

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P RNL  WTA++SGL Q+    +A  +F  MR  G ++      SS + ACA+   +E+G
Sbjct: 2   PQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICG-EVPTQFAFSSAIRACASLGSIEMG 60

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           KQ+H L +  G  S LF+ + + DMY+KC  +  A  +F  M  KD VSWT++I G ++ 
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G+ EE L  + +M+   V  ++      + AC  +     GR +  S+++  G    +  
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVK-LGFESDIFV 179

Query: 378 YTCLLDLLSRSGHLDEAENL-----------------------------------IKAMP 402
              L D+ S++G ++ A N+                                   ++   
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG 239

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK-PEDPSSYILLSNVYASAAMWQH 459
            EP+E T+++L+ AC +    E GT++   ++ +   EDP    +L ++Y    + + 
Sbjct: 240 IEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQ 297


>gi|359476777|ref|XP_002278837.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g23330 [Vitis vinifera]
          Length = 1008

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/618 (37%), Positives = 347/618 (56%), Gaps = 47/618 (7%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            K +H  I++ GL     L N+++D Y KC    YA  L   M ++D VSW  ++++Y Q 
Sbjct: 408  KGIHGWILRNGLDLDAVLNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQI 467

Query: 83   NLPQKTISIF-----------STML-----------ALDKLQP--------DHFVFASLV 112
               QK++ +F           +TM+           AL+ L          +   F+  +
Sbjct: 468  GDMQKSVDLFRQLPGKDAASWNTMIDGLMRNGCERVALELLYKMVAAGPAFNKLTFSIAL 527

Query: 113  KACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSV 172
                SL    LGKQ+H   +     DD  V++SL+DMY KCG    A  +F  +  ++S+
Sbjct: 528  VLASSLSVLGLGKQIHTQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSM 587

Query: 173  SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
                            ++ E  + A V ++  W+++VSG VQ+    DA  +F  M    
Sbjct: 588  ---------------MNSEESCDDAVVESV-SWSSMVSGYVQNGRFEDALKTFSFMICSQ 631

Query: 233  VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
            V+ VD   L+S+V ACA+  VLELG+Q+HG +  +G+   +F+ ++I+DMY KC  +  A
Sbjct: 632  VE-VDKFTLTSVVSACASAGVLELGRQVHGYIQKIGHGLDVFLGSSIIDMYVKCGSLNDA 690

Query: 293  KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
              IF + + ++VV WTS+I G A HGQ  E + L++ M++ G+ PNEV+FVG++ ACSH 
Sbjct: 691  WLIFNQAKDRNVVLWTSMISGCALHGQGREAVRLFELMINEGITPNEVSFVGVLTACSHA 750

Query: 353  GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
            GL+ +G K F+ M E YGI P  +H+TC++DL  R+G L+E +  I           W +
Sbjct: 751  GLLEEGCKYFRLMREVYGIRPGAEHFTCMVDLYGRAGRLNEIKEFIHNNAISKLSSVWRS 810

Query: 413  LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
             LS+C+ H+N EMG  V   LL L+P D   YIL S++ A+   W+  +K+R LM    V
Sbjct: 811  FLSSCRVHKNIEMGIWVCKKLLELEPFDAGPYILFSSICATEHRWEEAAKIRSLMQQRGV 870

Query: 473  KKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQ 532
            KK P  S+I+     H F  G+ SHP   +I+  L EL   +K  GY  D + V+ D+EQ
Sbjct: 871  KKNPSQSWIQLKNQVHSFVMGDRSHPQDTKIYSYLDELIGRLKEIGYSTDVTPVMQDVEQ 930

Query: 533  KEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRD 592
            ++++  L +HSE+LA+AYG++ + PGT +RV+KNLRVC DCH  +K  S +  REI++RD
Sbjct: 931  EQRQVLLGYHSEKLAIAYGIISTAPGTPIRVMKNLRVCIDCHNFIKYASELLGREIIIRD 990

Query: 593  ATRYHHFKDGKCSCNDFW 610
              R+HHFK G CSC D+W
Sbjct: 991  IHRFHHFKHGHCSCADYW 1008



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 233/463 (50%), Gaps = 25/463 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHA++IK G    G   N L++ Y K   ++ AH + EE+PQ D  SW  +++ + + 
Sbjct: 308 EVLHAKLIKNGC--VGIRGNHLLNLYAKSQNLEQAHKMFEEIPQTDVFSWTVLISGFARI 365

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGS-LGATRLGKQVHACFVLSPFCDDDV 141
            L    + +F+ M     + P+ F  + ++K+C S +  +R+GK +H   + +    D V
Sbjct: 366 GLSADVLGLFTKMQD-QGVCPNQFTLSIVLKSCSSNVNDSRIGKGIHGWILRNGLDLDAV 424

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           + +S++D Y KC     A  +F  +  K++VSW  M+S+Y + G  + ++++F Q P ++
Sbjct: 425 LNNSILDYYVKCRCFGYAEKLFGLMAEKDTVSWNIMMSSYLQIGDMQKSVDLFRQLPGKD 484

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
              W  ++ GL+++  E  A     +M   G    + L  S  +   ++ +VL LGKQIH
Sbjct: 485 AASWNTMIDGLMRNGCERVALELLYKMVAAG-PAFNKLTFSIALVLASSLSVLGLGKQIH 543

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK---------------DVVS 306
             V+ +G     F+ N+++DMY KC ++  A  IF  + ++               + VS
Sbjct: 544 TQVLKVGVLDDGFVRNSLIDMYCKCGEMEKASVIFKHLPQESSMMNSEESCDDAVVESVS 603

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W+S++ G  Q+G+ E+ L  +  M+ + V+ ++ T   ++ AC+  G++  GR++    I
Sbjct: 604 WSSMVSGYVQNGRFEDALKTFSFMICSQVEVDKFTLTSVVSACASAGVLELGRQV-HGYI 662

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
           +  G    +   + ++D+  + G L++A  LI     + +   W +++S C  H      
Sbjct: 663 QKIGHGLDVFLGSSIIDMYVKCGSLNDAW-LIFNQAKDRNVVLWTSMISGCALHGQGREA 721

Query: 427 TRVANHLLS--LKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
            R+   +++  + P +  S++ +    + A + +   K  +LM
Sbjct: 722 VRLFELMINEGITPNEV-SFVGVLTACSHAGLLEEGCKYFRLM 763


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/594 (38%), Positives = 338/594 (56%), Gaps = 33/594 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VCA+    +    +H  ++K GL     + N LI+ Y K   +Q A  + ++M  RD 
Sbjct: 229 LPVCAQSDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDL 288

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW SI+ AY Q N P   +  F  M  L  ++PD     SL      L   R+ + +  
Sbjct: 289 VSWNSIIAAYEQNNDPSTALRFFKGM-QLGGIRPDLLTVVSLTSIFSQLSDQRISRSILG 347

Query: 130 CFVLSPFCDDDVV-KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
             +   + D DVV  ++LV+MYAK G  N A  VFD +  K+++SW  +++ Y ++G   
Sbjct: 348 FVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLAS 407

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A                            IDA Y+ +E  R+ +      V  SI+ A 
Sbjct: 408 EA----------------------------IDA-YNMMEECRDTIPNQGTWV--SIIPAY 436

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           ++   L+ G +IH  +I       +F++  ++D+Y KC  +  A  +F  + R   V W 
Sbjct: 437 SHVGALQQGMKIHAKLIKNSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWN 496

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           +II     HG+ EE L L+ +M++  VK + +TFV L+ ACSH GLV +G+K F  M ++
Sbjct: 497 AIIASLGIHGRGEEALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKE 556

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YGI PSL+HY C++DLL R+G+L++A  L++ MP +PD   W ALLSACK + N E+GT 
Sbjct: 557 YGIKPSLKHYGCMVDLLGRAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTL 616

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            ++ LL +  E+   Y+LLSN+YA+   W+ V KVR L     ++K PG+S +  G  + 
Sbjct: 617 ASDRLLEVDSENVGYYVLLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSVVVGSKAE 676

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
           +FY G  +HP   EI++ L  L A+MK  GYVPD S V  D+E+ EKE+ L  HSERLA+
Sbjct: 677 VFYTGNQTHPKYTEIYKELKVLSAKMKSLGYVPDYSFVYQDIEEDEKEQILNSHSERLAI 736

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           A+G++ + P + +R+ KNLRVCGDCH   K ISRI++REIVVRD+ R+HHFKDG
Sbjct: 737 AFGIISTPPRSPIRIFKNLRVCGDCHNATKYISRISEREIVVRDSNRFHHFKDG 790



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/397 (25%), Positives = 184/397 (46%), Gaps = 39/397 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LHA ++  G  Q   L   LI+ Y     +  +    + + +++  SW SI++AY + 
Sbjct: 39  KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRF 98

Query: 83  NLPQKTISIFSTMLAL---DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
               + ++  + + ++     L+PD + F  ++KAC SL     GK+VH C     F DD
Sbjct: 99  GKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKACVSLVD---GKKVHCCVFKMGFEDD 155

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             V +SLV +Y++ G+ + A  VF  +                               PV
Sbjct: 156 VFVAASLVHLYSRYGVLDVAHKVFVDM-------------------------------PV 184

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
           +++  W A++SG  Q+ N   A      M+ EGV + D + ++SI+  CA    +  G  
Sbjct: 185 KDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKM-DTITVASILPVCAQSDDVINGVL 243

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           IH  V+  G +S +F+SNA+++MY+K   +  A+ +F +M  +D+VSW SII    Q+  
Sbjct: 244 IHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNND 303

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
               L  +  M   G++P+ +T V L    S +      R +   +I    +   +    
Sbjct: 304 PSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGN 363

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            L+++ ++ G+++ A  +   +P   D  +W  L++ 
Sbjct: 364 ALVNMYAKLGYMNCAHTVFDQLP-RKDTISWNTLVTG 399



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/321 (24%), Positives = 152/321 (47%), Gaps = 36/321 (11%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           F +L  +C ++ AT   K++HA  ++     + V+ + L+++Y   G  + +R+ FD I 
Sbjct: 25  FNALFNSCVNVNAT---KKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            KN  SW +++SAY R G+  +AM    Q       L++    G ++       FY+F  
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQ-------LFSMCGGGHLRPD-----FYTFPP 129

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           + +  V +VD                   GK++H  V  +G+E  +F++ ++V +Y++  
Sbjct: 130 ILKACVSLVD-------------------GKKVHCCVFKMGFEDDVFVAASLVHLYSRYG 170

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            +  A  +F  M  KDV SW ++I G  Q+G A   L + + M   GVK + +T   ++ 
Sbjct: 171 VLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASILP 230

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
            C+    V  G  L    +  +G+   +     L+++ S+ G L +A+ +   M    D 
Sbjct: 231 VCAQSDDVING-VLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVR-DL 288

Query: 408 PTWAALLSACKHHRNTEMGTR 428
            +W ++++A + + +     R
Sbjct: 289 VSWNSIIAAYEQNNDPSTALR 309



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 95/202 (47%), Gaps = 22/202 (10%)

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
            +++  +C N   +   K++H L++  G    + +S  ++++Y    DI  ++  F  + 
Sbjct: 25  FNALFNSCVN---VNATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIH 81

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVS----AGVKPNEVTFVGLIYACSHVGLVG 356
           +K++ SW SII    + G+  E +   +++ S      ++P+  TF  ++ AC  V LV 
Sbjct: 82  KKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC--VSLV- 138

Query: 357 KGRK----LFKSMIE-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
            G+K    +FK   E D  +  SL H      L SR G LD A  +   MP + D  +W 
Sbjct: 139 DGKKVHCCVFKMGFEDDVFVAASLVH------LYSRYGVLDVAHKVFVDMPVK-DVGSWN 191

Query: 412 ALLSACKHHRNTEMGTRVANHL 433
           A++S    + N      V N +
Sbjct: 192 AMISGFCQNGNAAGALGVLNRM 213


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/569 (37%), Positives = 330/569 (57%), Gaps = 35/569 (6%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           LI  Y     +  A  + +E+P +D VSW ++++ Y +    ++ + +F  M+  + ++P
Sbjct: 175 LITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTN-VRP 233

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D     S+V AC    +  LG+QVH+      F  +  + ++L+D+Y KCG    A  +F
Sbjct: 234 DESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLF 293

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           + +  K+ +SW  ++  Y      K+A+ +F+                            
Sbjct: 294 EGLSYKDVISWNTLIGGYTHMNLYKEALLLFQ---------------------------- 325

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL--GYESCLFISNAIVD 281
              EM R G    D  +LS I+ ACA+   +E+G+ IH  +     G  +      +++D
Sbjct: 326 ---EMLRSGESPNDVTMLS-ILPACAHLGAIEIGRWIHVYINKRLKGVANASSHRTSLID 381

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MYAKC DI AA+ +F  +  + + SW ++I G A HG+A     ++  M    ++P+++T
Sbjct: 382 MYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDIT 441

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           FVGL+ ACSH G++  GR +F+SM EDY ITP L+HY C++DLL  SG   EAE +I  M
Sbjct: 442 FVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINTM 501

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
             EPD   W +LL ACK + N E+G   A +L+ ++P++P SY+LLSN+YA+A  W  V+
Sbjct: 502 EMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAGRWNEVA 561

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           K+R L++   +KK PG S IE     H F  G+  HP   EI+ +L E++  ++  G+VP
Sbjct: 562 KIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVP 621

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           DTS VL +ME++ KE  L  HSE+LA+A+GL+ + PGT L +VKNLRVC +CH   K+IS
Sbjct: 622 DTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLIS 681

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I KREI+ RD TR+HHF+DG CSCND+W
Sbjct: 682 KIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 129/447 (28%), Positives = 230/447 (51%), Gaps = 40/447 (8%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLID---AYGKCDLVQYAHHLLEEMPQRDHVSWASILT 77
           +++ +HAQ+IK GLH      + LI+        D + YA  + E + + + + W ++  
Sbjct: 17  SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 76

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
            +  ++ P   + ++  M++L  L P+ + F  L+K+C    A R G+Q+H   +   + 
Sbjct: 77  GHALSSDPVSALYLYVCMISLG-LLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYD 135

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D  V +SL+ MY + G   +AR VFD    ++ VS+TA+++ YA  G    A ++F++ 
Sbjct: 136 LDLYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEI 195

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P++++  W A++SG  ++ N  +A   F EM +  V   D   + S+V ACA  A +ELG
Sbjct: 196 PIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVR-PDESTMVSVVSACAQSASIELG 254

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           +Q+H  +   G+ S L I NA++D+Y KC ++  A  +F  +  KDV+SW ++I G    
Sbjct: 255 RQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHM 314

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY-GITPSLQ 376
              +E L L+ EM+ +G  PN+VT + ++ AC+H+G +  GR +   + +   G+  +  
Sbjct: 315 NLYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASS 374

Query: 377 HYTCLLDLLSRSGHLDEAENLI-----------KAMPF---------------------- 403
           H T L+D+ ++ G ++ A+ +             AM F                      
Sbjct: 375 HRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNE 434

Query: 404 -EPDEPTWAALLSACKHHRNTEMGTRV 429
            EPD+ T+  LLSAC H    ++G  +
Sbjct: 435 IEPDDITFVGLLSACSHSGMLDLGRHI 461



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 147/349 (42%), Gaps = 50/349 (14%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA+       + +H+ I   G      + N LID Y KC  V+ A  L E +  +D +SW
Sbjct: 245 CAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISW 304

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF- 131
            +++  Y   NL ++ + +F  ML   +  P+     S++ AC  LGA  +G+ +H    
Sbjct: 305 NTLIGGYTHMNLYKEALLLFQEMLRSGE-SPNDVTMLSILPACAHLGAIEIGRWIHVYIN 363

Query: 132 -VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
             L    +    ++SL+DMYAKCG    A+ VFDSI  ++  SW AM+  +A  GR   A
Sbjct: 364 KRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAA 423

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
            +IF +                   +NEI+                D +    ++ AC++
Sbjct: 424 FDIFSR-----------------MRKNEIEP---------------DDITFVGLLSACSH 451

Query: 251 FAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK- 302
             +L+LG+ I       + +   L +  C+      +D+         A+++   M  + 
Sbjct: 452 SGMLDLGRHIFRSMKEDYKITPKLEHYGCM------IDLLGHSGLFKEAEEMINTMEMEP 505

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK-PNEVTFVGLIYACS 350
           D V W S++     +   E   +    ++    K P     +  IYA +
Sbjct: 506 DGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATA 554


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/586 (38%), Positives = 327/586 (55%), Gaps = 34/586 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H QIIK G      + N L+  Y KC  +  A  + + +  R  VSW SI++ Y Q   
Sbjct: 176 IHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGK 235

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
             + + +FS M   + ++PD     S+++A   +     G+ +H   +     D+  +  
Sbjct: 236 AVEALRMFSQMRN-NGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLI 294

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SL   YAKCGL   A++ FD                               Q    N+ +
Sbjct: 295 SLTAFYAKCGLVTVAKSFFD-------------------------------QMKTTNVIM 323

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W A++SG  ++ +  +A   F  M    +   D + + S V A A    LEL + +   V
Sbjct: 324 WNAMISGYAKNGHAEEAVNLFHYMISRNIK-PDSVTVRSAVLASAQVGSLELAQWMDDYV 382

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
               Y S +F++ +++DMYAKC  +  A+ +F R   KDVV W+++I+G   HGQ  E +
Sbjct: 383 SKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAI 442

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            LY  M  AGV PN+VTF+GL+ AC+H GLV +G +LF  M +D+ I P  +HY+C++DL
Sbjct: 443 NLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCM-KDFEIVPRNEHYSCVVDL 501

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
           L R+G+L EA   I  +P EP    W ALLSACK +R   +G   AN L SL P +   Y
Sbjct: 502 LGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYNTGHY 561

Query: 445 ILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIF 504
           + LSN+YAS+ +W  V+ VR LM    + K+ GYS IE       F+ G+ SHP+  EIF
Sbjct: 562 VQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEINGKLQAFHVGDKSHPMAKEIF 621

Query: 505 ELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVV 564
           + L  L+  +K  G+VP T SVLHD+  +EKE  L +HSER+AVAYGL+ + PGT LR+ 
Sbjct: 622 DELQRLERRLKEVGFVPYTESVLHDLNYEEKEENLSFHSERIAVAYGLISTAPGTTLRIT 681

Query: 565 KNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           KNLR C +CH  +K+IS++ +REI+VRDA R+HHFKDG CSC D+W
Sbjct: 682 KNLRACVNCHSAIKLISKLVEREIIVRDANRFHHFKDGLCSCGDYW 727



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 194/428 (45%), Gaps = 66/428 (15%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H +++  GL   G L   L++       + YA  L +E    D   W +I+ +Y++ N+
Sbjct: 75  IHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNM 134

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            + T+ ++  M     + PD F F  ++KAC  L    L   +H   +   F  D  V++
Sbjct: 135 YRDTVEMYRWM-RWTGVHPDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGFGSDVFVQN 193

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
            LV +YAKCG    A+ VFD +  +  VSWT+++S YA++G+  +A+ +F Q        
Sbjct: 194 GLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQ-------- 245

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                                  MR  GV   D + L SI+ A  +   LE G+ IHG V
Sbjct: 246 -----------------------MRNNGVK-PDWIALVSILRAYTDVDDLEQGRSIHGFV 281

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           I +G E    +  ++   YAKC  +  AK  F +M+  +V+ W ++I G A++G AEE +
Sbjct: 282 IKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAV 341

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVG----------LVGK---GRKLF--KSMIEDY 369
            L+  M+S  +KP+ VT    + A + VG           V K   G  +F   S+I+ Y
Sbjct: 342 NLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMY 401

Query: 370 GITPSLQHYTCLLDLLSRS---------------GHLDEAENL---IKAMPFEPDEPTWA 411
               S++    + D  S                 G   EA NL   +K     P++ T+ 
Sbjct: 402 AKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFI 461

Query: 412 ALLSACKH 419
            LL+AC H
Sbjct: 462 GLLTACNH 469



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 162/365 (44%), Gaps = 49/365 (13%)

Query: 101 LQPDHFV-----------FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM 149
           L P+HFV           +ASL+    +    R   Q+H   V+S    +  + + LV+ 
Sbjct: 41  LHPEHFVNHDHCFNSDSFYASLID---NSTHKRHLDQIHNRLVISGLQHNGFLMTKLVNG 97

Query: 150 YAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALV 209
            +  G    AR +FD     +   W A++ +Y+R+   +D +E++          W    
Sbjct: 98  SSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYR---------W---- 144

Query: 210 SGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY 269
                             MR  GV   D      ++ AC       L   IHG +I  G+
Sbjct: 145 ------------------MRWTGVH-PDGFTFPYVLKACTELLDFGLSCIIHGQIIKYGF 185

Query: 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDE 329
            S +F+ N +V +YAKC  I  AK +F  +  + +VSWTSII G AQ+G+A E L ++ +
Sbjct: 186 GSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQ 245

Query: 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389
           M + GVKP+ +  V ++ A + V  + +GR +   +I+  G+         L    ++ G
Sbjct: 246 MRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFVIK-MGLEDEPALLISLTAFYAKCG 304

Query: 390 HLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSN 449
            +  A++    M    +   W A++S    + + E    + ++++S +   P S  + S 
Sbjct: 305 LVTVAKSFFDQMK-TTNVIMWNAMISGYAKNGHAEEAVNLFHYMIS-RNIKPDSVTVRSA 362

Query: 450 VYASA 454
           V ASA
Sbjct: 363 VLASA 367



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 97/195 (49%), Gaps = 1/195 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +++H  +IK+GL     L  +L   Y KC LV  A    ++M   + + W ++++ Y + 
Sbjct: 275 RSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKN 334

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ +++F  M++ + ++PD     S V A   +G+  L + +      S +  D  V
Sbjct: 335 GHAEEAVNLFHYMISRN-IKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFV 393

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SL+DMYAKCG    AR VFD    K+ V W+AM+  Y   G+  +A+ ++       +
Sbjct: 394 NTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGV 453

Query: 203 FLWTALVSGLVQSRN 217
           F       GL+ + N
Sbjct: 454 FPNDVTFIGLLTACN 468


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like
            [Glycine max]
          Length = 1047

 Score =  423 bits (1087), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/601 (37%), Positives = 344/601 (57%), Gaps = 33/601 (5%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            LR C+  +     + +H Q++K G      + + LID Y K   + +A  +   + ++D 
Sbjct: 480  LRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDV 539

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            VSW +++  Y Q     + +++F  M     +  D+  FAS + AC  + A   G+Q+HA
Sbjct: 540  VSWTAMIAGYAQHEKFAEALNLFKEMQD-QGIHSDNIGFASAISACAGIQALNQGQQIHA 598

Query: 130  CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               +S + DD  V ++LV                               S YAR G+ +D
Sbjct: 599  QACVSGYSDDLSVGNALV-------------------------------SLYARCGKVRD 627

Query: 190  AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            A   F++   ++   W +L+SG  QS +  +A   F +M + G +I +       V A A
Sbjct: 628  AYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEI-NSFTFGPAVSAAA 686

Query: 250  NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
            N A ++LGKQIH ++I  G++S   +SN ++ +YAKC +I  A+  F  M  K+ +SW +
Sbjct: 687  NVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNA 746

Query: 310  IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
            ++ G +QHG   + L+L+++M   GV PN VTFVG++ ACSHVGLV +G K F+SM E +
Sbjct: 747  MLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVH 806

Query: 370  GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            G+ P  +HY C++DLL RSG L  A   ++ MP +PD      LLSAC  H+N ++G   
Sbjct: 807  GLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNIDIGEFA 866

Query: 430  ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
            A+HLL L+P+D ++Y+LLSN+YA    W    + R++M    VKKEPG S+IE     H 
Sbjct: 867  ASHLLELEPKDSATYVLLSNMYAVTGKWGCRDRTRQMMKDRGVKKEPGRSWIEVNNSVHA 926

Query: 490  FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
            F+AG+  HP  D+I+E L +L+      GY+P T+S+L+D E+++K      HSE+LA+A
Sbjct: 927  FFAGDQKHPNVDKIYEYLRDLNELAAENGYIPQTNSLLNDAERRQKGPTQIIHSEKLAIA 986

Query: 550  YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
            +GLL     T + V KNLRVCGDCH  +K +S+I+ R IVVRD+ R+HHFK G CSC D+
Sbjct: 987  FGLLSLSSSTPIHVFKNLRVCGDCHNWIKYVSKISDRVIVVRDSYRFHHFKGGICSCKDY 1046

Query: 610  W 610
            W
Sbjct: 1047 W 1047



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 118/407 (28%), Positives = 198/407 (48%), Gaps = 35/407 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C + +     + LH  ++K G      + N L+  Y +      A  +   M QRD 
Sbjct: 278 LSACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDE 337

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS+ S+++  +Q     K + +F  M  LD L+PD    ASL+ AC S+GA  +GKQ H+
Sbjct: 338 VSYNSLISGLSQQGYSDKALELFKKM-CLDCLKPDCVTVASLLSACSSVGALLVGKQFHS 396

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +    D +++ +L+D+Y KC     A   F S + +N V W  ML AY        
Sbjct: 397 YAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAY-------- 448

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
                                GL+ + NE  +F  F +M+ EG++  +     SI+  C+
Sbjct: 449 ---------------------GLLDNLNE--SFKIFTQMQMEGIE-PNQFTYPSILRTCS 484

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +   ++LG+QIH  V+  G++  +++S+ ++DMYAK   +  A  IF R++ KDVVSWT+
Sbjct: 485 SLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTA 544

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G AQH +  E L L+ EM   G+  + + F   I AC+ +  + +G+++        
Sbjct: 545 MIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACVS- 603

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           G +  L     L+ L +R G + +A      + F  D  +W +L+S 
Sbjct: 604 GYSDDLSVGNALVSLYARCGKVRDAYFAFDKI-FSKDNISWNSLISG 649



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 121/483 (25%), Positives = 220/483 (45%), Gaps = 77/483 (15%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LH +I+K+G      L   L+D Y     +  A  + +EMP R    W  +L  +    +
Sbjct: 90  LHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKM 149

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT-RLGKQVHACFVLSPFCDDDVVK 143
             + + +F  ML  +K++PD   +A +++ CG         +++HA  +   + +   V 
Sbjct: 150 AGRVLGLFRRMLQ-EKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVC 208

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           + L+D+Y K G  N+A+ VFD ++ ++SVS                              
Sbjct: 209 NPLIDLYFKNGFLNSAKKVFDGLQKRDSVS------------------------------ 238

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            W A++SGL QS  E +A   F +M   GV    P + SS++ AC      ++G+Q+HGL
Sbjct: 239 -WVAMLSGLSQSGCEEEAVLLFCQMHTSGV-YPTPYIFSSVLSACTKVEFYKVGEQLHGL 296

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           V+  G+    ++ NA+V +Y++  + I A+ +F  M ++D VS+ S+I G +Q G +++ 
Sbjct: 297 VLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKA 356

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           L L+ +M    +KP+ VT   L+ ACS VG +  G++ F S     G++  +     LLD
Sbjct: 357 LELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQ-FHSYAIKAGMSSDIILEGALLD 415

Query: 384 LLSRSGHLD---------EAENLI-------------------------KAMPFEPDEPT 409
           L  +   +          E EN++                         +    EP++ T
Sbjct: 416 LYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFT 475

Query: 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469
           + ++L  C   R  ++G ++   +L    +         NVY S+ +    +K+ KL   
Sbjct: 476 YPSILRTCSSLRAVDLGEQIHTQVLKTGFQ--------FNVYVSSVLIDMYAKLGKLDHA 527

Query: 470 MEV 472
           +++
Sbjct: 528 LKI 530



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 200/419 (47%), Gaps = 40/419 (9%)

Query: 6   YLHRLRVCARHQIAL-TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           Y   LR C    +    V+ +HA+ I  G      + N LID Y K   +  A  + + +
Sbjct: 172 YAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGL 231

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
            +RD VSW ++L+  +Q+   ++ + +F  M     + P  ++F+S++ AC  +   ++G
Sbjct: 232 QKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHT-SGVYPTPYIFSSVLSACTKVEFYKVG 290

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           +Q+H   +   F  +  V ++LV +Y++ G    A  VF+++  ++ VS+ +++S  ++ 
Sbjct: 291 EQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQ 350

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP--LVLS 242
           G    A+E+F                                  ++  +D + P  + ++
Sbjct: 351 GYSDKALELF----------------------------------KKMCLDCLKPDCVTVA 376

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           S++ AC++   L +GKQ H   I  G  S + +  A++D+Y KCSDI  A + F     +
Sbjct: 377 SLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETE 436

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           +VV W  ++V         E+  ++ +M   G++PN+ T+  ++  CS +  V  G ++ 
Sbjct: 437 NVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIH 496

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
             +++  G   ++   + L+D+ ++ G LD A  + + +  E D  +W A+++    H 
Sbjct: 497 TQVLKT-GFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLK-EKDVVSWTAMIAGYAQHE 553



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/173 (21%), Positives = 78/173 (45%), Gaps = 1/173 (0%)

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++  C +      G ++HG ++ +G+ + + +   ++D+Y    D+  A  +F  M  + 
Sbjct: 74  LLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRP 133

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           +  W  ++        A   L L+  M+   VKP+E T+ G++  C    +     +   
Sbjct: 134 LSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIH 193

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +    +G   SL     L+DL  ++G L+ A+ +   +  + D  +W A+LS 
Sbjct: 194 ARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQ-KRDSVSWVAMLSG 245


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/589 (37%), Positives = 329/589 (55%), Gaps = 35/589 (5%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           T+H+  IK GL     + N LID Y +   ++    + + M  RD +SW SI+ AY    
Sbjct: 268 TIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNE 327

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP--FCDDDV 141
            P + IS+F  M  L ++QPD     SL      LG  R  + V   F L    F +D  
Sbjct: 328 QPLRAISLFQEM-RLSRIQPDCLTLISLASILSQLGDIRACRSVQG-FTLRKGWFLEDIT 385

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           + +++V MYAK GL ++ARAVF+ +                               P  +
Sbjct: 386 IGNAVVVMYAKLGLVDSARAVFNWL-------------------------------PNTD 414

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           +  W  ++SG  Q+    +A   +  M  EG    +     S++ AC+    L  G ++H
Sbjct: 415 VISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLH 474

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           G ++  G    +F+  ++ DMY KC  +  A  +F ++ R + V W ++I     HG  E
Sbjct: 475 GRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGE 534

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           + + L+ EM+  GVKP+ +TFV L+ ACSH GLV +G+  F+ M  DYGITPSL+HY C+
Sbjct: 535 KAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCM 594

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +D+  R+G L+ A   IK+M  +PD   W ALLSAC+ H N ++G   + HL  ++PE  
Sbjct: 595 VDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEPEHV 654

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
             ++LLSN+YASA  W+ V ++R +     ++K PG+S +E      +FY G  +HP+ +
Sbjct: 655 GYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDNKVEVFYTGNQTHPMYE 714

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           E++  LT L A++K  GYVPD   VL D+E  EKE  L  HSERLA+A+ L+ +   T +
Sbjct: 715 EMYRELTALQAKLKMIGYVPDHRFVLQDVEDDEKEHILMSHSERLAIAFALIATPAKTTI 774

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+ KNLRVCGDCH V K IS+IT+REI+VRD+ R+HHFK+G CSC D+W
Sbjct: 775 RIFKNLRVCGDCHSVTKFISKITEREIIVRDSNRFHHFKNGVCSCGDYW 823



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 179/407 (43%), Gaps = 43/407 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            R C   Q A   K LHA+++     Q   +   L++ Y     V  A H  + +  RD 
Sbjct: 61  FRYCTNLQSA---KCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDV 117

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            +W  +++ Y +A    + I  FS  +    L PD+  F S++KAC ++     G ++H 
Sbjct: 118 YAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVID---GNKIHC 174

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +   F  D  V +SL+ +Y++     NAR +FD + +++  SW AM+S Y +SG  K+
Sbjct: 175 LALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKE 234

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +                                      G+  +D + + S++ AC 
Sbjct: 235 ALTL------------------------------------SNGLRAMDSVTVVSLLSACT 258

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
                  G  IH   I  G ES LF+SN ++D+YA+   +   + +F RM  +D++SW S
Sbjct: 259 EAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNS 318

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           II     + Q    ++L+ EM  + ++P+ +T + L    S +G +   R +    +   
Sbjct: 319 IIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKG 378

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
                +     ++ + ++ G +D A  +   +P   D  +W  ++S 
Sbjct: 379 WFLEDITIGNAVVVMYAKLGLVDSARAVFNWLP-NTDVISWNTIISG 424


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 233/607 (38%), Positives = 346/607 (57%), Gaps = 43/607 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L +CA+    +    +H  +IK GL     + N LI+ Y K   +Q A  + + M  RD 
Sbjct: 255 LPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDL 314

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW SI+ AY Q + P   +  F  ML +  ++PD     SL    G L   R+G+ VH 
Sbjct: 315 VSWNSIIAAYEQNDDPVTALGFFKEMLFV-GMRPDLLTVVSLASIFGQLSDRRIGRAVHG 373

Query: 130 CFVLSPFCD-DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
             V   + + D V+ ++LV+MYAK G  + ARAVF+ +  ++ +SW  +++ YA++G   
Sbjct: 374 FVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLAS 433

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-DPLVLSSIVGA 247
           +A                            IDA+     M  EG  IV +     SI+ A
Sbjct: 434 EA----------------------------IDAY----NMMEEGRTIVPNQGTWVSILPA 461

Query: 248 CANFAVLELGKQIHGLVIALGYESCL----FISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
            ++   L+ G +IHG +I    ++CL    F++  ++DMY KC  +  A  +F  + ++ 
Sbjct: 462 YSHVGALQQGMKIHGRLI----KNCLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQET 517

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
            V W +II     HG  E+ L L+ +M + GVK + +TFV L+ ACSH GLV + +  F 
Sbjct: 518 SVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFD 577

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
           +M ++Y I P+L+HY C++DL  R+G+L++A NL+  MP + D   W  LL+AC+ H N 
Sbjct: 578 TMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLAACRIHGNA 637

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           E+GT  ++ LL +  E+   Y+LLSN+YA+   W+   KVR L     ++K PG+S +  
Sbjct: 638 ELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKTPGWSSVVV 697

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
           G    +FYAG  SHP   EI+E L  L+A+MK  GYVPD S VL D+E+ EKE  L  HS
Sbjct: 698 GSVVEVFYAGNQSHPQCAEIYEELRVLNAKMKSLGYVPDYSFVLQDVEEDEKEEILTSHS 757

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           ERLA+ +G++ + P + +R+ KNLRVCGDCH   K IS+IT+REI+VRD+ R+HHFKDG 
Sbjct: 758 ERLAIVFGIISTPPKSPIRIFKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGI 817

Query: 604 CSCNDFW 610
           CSC D+W
Sbjct: 818 CSCGDYW 824



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 207/407 (50%), Gaps = 43/407 (10%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  ++K+G      +  +LI  Y +   V+ AH +  +MP RD  SW ++++ + Q 
Sbjct: 167 EKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQN 226

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + +   M   ++++ D    +S++  C                       +DVV
Sbjct: 227 GNVAEALRVLDRM-KTEEVKMDTVTVSSMLPICAQ--------------------SNDVV 265

Query: 143 KSSLVDMYA-KCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
              LV +Y  K GL ++   VF S          A+++ Y++ GR +DA  +F+   VR+
Sbjct: 266 GGVLVHLYVIKHGLESD---VFVS---------NALINMYSKFGRLQDAQRVFDGMEVRD 313

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGV--DIVDPLVLSSIVGACANFAVLELGKQ 259
           L  W ++++   Q+ + + A   F EM   G+  D++  + L+SI G  ++     +G+ 
Sbjct: 314 LVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSD---RRIGRA 370

Query: 260 IHGLVIALGY-ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           +HG V+   + E  + I NA+V+MYAK   I  A+ +F ++  +DV+SW ++I G AQ+G
Sbjct: 371 VHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNG 430

Query: 319 QAEETLALYDEMVSA-GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
            A E +  Y+ M     + PN+ T+V ++ A SHVG + +G K+   +I++  +   +  
Sbjct: 431 LASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKN-CLFLDVFV 489

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
            TCL+D+  + G L++A +L   +P E   P W A++S+   H + E
Sbjct: 490 ATCLIDMYGKCGRLEDAMSLFYEIPQETSVP-WNAIISSLGIHGHGE 535



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/408 (24%), Positives = 194/408 (47%), Gaps = 41/408 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            R C    +A   K LHA ++ LG  Q   L   L+  Y     +  +    + + +++ 
Sbjct: 58  FRSCTNINVA---KQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNI 114

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW S+++AY +    + ++   + +L+L  ++PD + F  ++KAC SL     G+++H 
Sbjct: 115 FSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---GEKMH- 170

Query: 130 CFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           C+VL    + DV V +SL+ +Y++ G    A  VF  + +++  SW AM+S + ++G   
Sbjct: 171 CWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVA 230

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A+ + ++                               M+ E V + D + +SS++  C
Sbjct: 231 EALRVLDR-------------------------------MKTEEVKM-DTVTVSSMLPIC 258

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A    +  G  +H  VI  G ES +F+SNA+++MY+K   +  A+ +F  M  +D+VSW 
Sbjct: 259 AQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWN 318

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           SII    Q+      L  + EM+  G++P+ +T V L      +     GR +   ++  
Sbjct: 319 SIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRC 378

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             +   +     L+++ ++ G +D A  + + +P   D  +W  L++ 
Sbjct: 379 RWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLP-SRDVISWNTLITG 425



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           F  + ++C ++    + KQ+HA  ++     D V+ + LV +YA  G  + +   F  I+
Sbjct: 54  FNLVFRSCTNI---NVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQ 110

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            KN  SW +M+SAY R GR +D+M+                V+ L+        FY+F  
Sbjct: 111 RKNIFSWNSMVSAYVRRGRYRDSMDC---------------VTELLSLSGVRPDFYTF-- 153

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
                     P VL     AC + A    G+++H  V+ +G+E  ++++ +++ +Y++  
Sbjct: 154 ----------PPVLK----ACLSLAD---GEKMHCWVLKMGFEHDVYVAASLIHLYSRFG 196

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            +  A  +F  M  +DV SW ++I G  Q+G   E L + D M +  VK + VT   ++ 
Sbjct: 197 AVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLP 256

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
            C+    V  G  +   +I+ +G+   +     L+++ S+ G L +A+ +   M    D 
Sbjct: 257 ICAQSNDVVGGVLVHLYVIK-HGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVR-DL 314

Query: 408 PTWAALLSACKHHRN--TEMGTRVANHLLSLKPE 439
            +W ++++A + + +  T +G       + ++P+
Sbjct: 315 VSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPD 348


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/601 (36%), Positives = 333/601 (55%), Gaps = 32/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +R CA        K +H   +K G+     + + L D Y KC  +  A  + EEMP +D 
Sbjct: 113 IRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDE 172

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++  Y++    ++ +  F  M+  +++  D  V  S + ACG+L A + G+ VH+
Sbjct: 173 VSWTAMIDGYSKIGEFEEALLAFKKMID-EEVTIDQHVLCSTLGACGALKACKFGRSVHS 231

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V   F  D  V ++L DMY+K G   +A  VF                          
Sbjct: 232 SVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGI------------------------ 267

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
                  +  RN+  +T L+ G V++         F+E+RR+G++  +    SS++ ACA
Sbjct: 268 ------DSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIE-PNEFTFSSLIKACA 320

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           N A LE G Q+H  V+ + ++   F+S+ +VDMY KC  +  A   F  +     ++W S
Sbjct: 321 NQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNS 380

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           ++    QHG  ++ + +++ MV  GVKPN +TF+ L+  CSH GLV +G   F SM + Y
Sbjct: 381 LVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTY 440

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G+ P  +HY+C++DLL R+G L EA+  I  MPFEP+   W + L AC+ H + EMG   
Sbjct: 441 GVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLA 500

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  L+ L+P++  + +LLSN+YA+   W+ V  VR  M    VKK PGYS+++ G  +H+
Sbjct: 501 AEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHV 560

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F A + SHP K  I+E L  L  ++K  GYVP T SV  DM+   KE+ L  HSER+AVA
Sbjct: 561 FGAEDWSHPRKSAIYEKLDTLLDQIKAAGYVPRTDSVPLDMDDSMKEKLLHRHSERIAVA 620

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + L+    G  + V KNLRVC DCH  +K IS++T R+I+VRD +R+HHF DG CSC D+
Sbjct: 621 FALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDY 680

Query: 610 W 610
           W
Sbjct: 681 W 681



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 128/415 (30%), Positives = 215/415 (51%), Gaps = 38/415 (9%)

Query: 8   HRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR 67
           H ++  A+ +     K LHA +I  G      L N L++ Y KC  + +A  L + MPQR
Sbjct: 10  HVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQR 69

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           + VSW ++++  +Q +   + I  F  M    ++ P  F F+S ++AC SLG+  +GKQ+
Sbjct: 70  NLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLGSIEMGKQM 128

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           H   +      +  V S+L DMY+KCG   +A  VF+ +  K+ VSWTAM+  Y++ G  
Sbjct: 129 HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGE- 187

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
                 FE+                        A  +F +M  E V I D  VL S +GA
Sbjct: 188 ------FEE------------------------ALLAFKKMIDEEVTI-DQHVLCSTLGA 216

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG-RMRRKDVVS 306
           C      + G+ +H  V+ LG+ES +F+ NA+ DMY+K  D+ +A ++FG     ++VVS
Sbjct: 217 CGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVS 276

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           +T +I G  +  Q E+ L+++ E+   G++PNE TF  LI AC++   + +G +L   ++
Sbjct: 277 YTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVM 336

Query: 367 E-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           + ++   P +   + L+D+  + G L++A      +  +P E  W +L+S    H
Sbjct: 337 KINFDEDPFVS--SILVDMYGKCGLLEQAIQAFDEIG-DPTEIAWNSLVSVFGQH 388



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 169/374 (45%), Gaps = 69/374 (18%)

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
           R GKQ+HA  + + +     + + LV+MY+KCG  ++A                      
Sbjct: 22  RRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHA---------------------- 59

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
                    +++F+  P RNL  WTA++SGL Q+    +A  +F  MR  G ++      
Sbjct: 60  ---------LKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICG-EVPTQFAF 109

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           SS + ACA+   +E+GKQ+H L +  G  S LF+ + + DMY+KC  +  A  +F  M  
Sbjct: 110 SSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPC 169

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           KD VSWT++I G ++ G+ EE L  + +M+   V  ++      + AC  +     GR +
Sbjct: 170 KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSV 229

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL------------------------ 397
             S+++  G    +     L D+ S++G ++ A N+                        
Sbjct: 230 HSSVVK-LGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETE 288

Query: 398 -----------IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK-PEDPSSYI 445
                      ++    EP+E T+++L+ AC +    E GT++   ++ +   EDP    
Sbjct: 289 QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS 348

Query: 446 LLSNVYASAAMWQH 459
           +L ++Y    + + 
Sbjct: 349 ILVDMYGKCGLLEQ 362



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 98/180 (54%), Gaps = 2/180 (1%)

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           D   L+ ++   A    L  GKQ+H L+I  GY  C F++N +V+MY+KC ++  A  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
             M ++++VSWT++I G +Q+ +  E +  +  M   G  P +  F   I AC+ +G + 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G+++   +   +GI   L   + L D+ S+ G + +A  + + MP + DE +W A++  
Sbjct: 124 MGKQM-HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMIDG 181


>gi|212720716|ref|NP_001132746.1| uncharacterized protein LOC100194233 [Zea mays]
 gi|194695290|gb|ACF81729.1| unknown [Zea mays]
          Length = 539

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/569 (37%), Positives = 324/569 (56%), Gaps = 33/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N LI  Y K   ++ A  L +EMP R+  +W +++     + L ++++  F  M   + +
Sbjct: 4   NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRR-EGM 62

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           QPD +   SL + C  L     G+QVHA  V S    D  V SSL  MY +CG   +  A
Sbjct: 63  QPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEA 122

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
              ++   N VS    +S   ++G  + A+E                             
Sbjct: 123 ALRALPSLNIVSCNTTISGRTQNGDAEGALEF---------------------------- 154

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  MR  GV+  + +   S V +C++ A L  G+QIH L I  G +  + +  ++V 
Sbjct: 155 ---FCLMRGAGVE-ANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVH 210

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY++C  +  ++ +       D+V  +++I     HG  ++ + L+ +M++AG +PNEVT
Sbjct: 211 MYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVT 270

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+ L+YACSH GL  +G   F+ M + YG+ PS++HYTC++DLL RSG L+EAE+LI +M
Sbjct: 271 FLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSM 330

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P +PD   W  LLSACK  +  +M  R+A  ++ L P D +SY+LLSN+ A+++ W+ VS
Sbjct: 331 PVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSASYVLLSNIRATSSRWEDVS 390

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           KVR+ M    V+KEPG S++E     H F  G+ SH  + EI E L E+   +++ GY P
Sbjct: 391 KVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREIVECLEEMMTRIRQCGYAP 450

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           D S V HDME +EKE  L  HSE+LA+A+  L    G  +RV+KNLRVC DCH+ +K++S
Sbjct: 451 DMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMS 510

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++  REIVVRD +R+HHFKDGKCSC D+W
Sbjct: 511 KVIGREIVVRDVSRFHHFKDGKCSCGDYW 539



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 146/331 (44%), Gaps = 50/331 (15%)

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           +SW  ++  Y ++G  + A ++F++ P RN+  W A+V+GL  S    ++   F  MRRE
Sbjct: 1   MSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRRE 60

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
           G+   D   L S+   CA    +  G+Q+H  V+  G +  + + +++  MY +C  +  
Sbjct: 61  GMQ-PDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRD 119

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
            +     +   ++VS  + I G  Q+G AE  L  +  M  AGV+ N VTFV  + +CS 
Sbjct: 120 GEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAVTSCSD 179

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN--------------- 396
           +  + +G+++    I+  G+   +   T L+ + SR G L ++E                
Sbjct: 180 LAALAQGQQIHALAIKT-GVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSA 238

Query: 397 LIKAMPF-------------------EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
           +I A  F                   EP+E T+  LL AC H                LK
Sbjct: 239 MISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHS--------------GLK 284

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
            E  + + L++  Y      +H + +  L+ 
Sbjct: 285 DEGMNCFELMTKTYGLQPSVKHYTCIVDLLG 315



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            R CA  +  ++ + +HA +++ GL +   + ++L   Y +C  ++     L  +P  + 
Sbjct: 73  FRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNI 132

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS  + ++   Q    +  +  F  M     ++ +   F S V +C  L A   G+Q+HA
Sbjct: 133 VSCNTTISGRTQNGDAEGALEFFCLMRGAG-VEANAVTFVSAVTSCSDLAALAQGQQIHA 191

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +       V +SLV MY++CG   ++  V       + V  +AM+SAY   G  + 
Sbjct: 192 LAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQK 251

Query: 190 AMEIFEQ 196
           A+ +F+Q
Sbjct: 252 AVGLFKQ 258



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 10/175 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA  IK G+ +  P+  +L+  Y +C  +  +  +  E    D V  +++++AY   
Sbjct: 187 QQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFH 246

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL--SPFCDDD 140
              QK + +F  M+A    +P+   F +L+ AC   G    G     CF L    +    
Sbjct: 247 GHGQKAVGLFKQMMAAGA-EPNEVTFLTLLYACSHSGLKDEGMN---CFELMTKTYGLQP 302

Query: 141 VVK--SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKKDAME 192
            VK  + +VD+  + G  N A  +  S+ ++ + V W  +LSA  ++ +K D  E
Sbjct: 303 SVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSA-CKTQKKFDMAE 356


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/598 (36%), Positives = 333/598 (55%), Gaps = 35/598 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLG-LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           Y   L+ C R       + +HA ++    L  +  L N +++ Y KC  +  A  + +EM
Sbjct: 90  YSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           P +D V+W +++  ++Q N P+  + +F  ML L   QP+HF  +SL+KA GS      G
Sbjct: 150 PTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLG-FQPNHFTLSSLLKASGSEHGLDPG 208

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
            Q+HA  +   +     V S+LVDMYA+C                               
Sbjct: 209 TQLHAFCLKYGYQSSVYVGSALVDMYARC------------------------------- 237

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G    A   F+  P ++   W AL+SG  +      A +   +M+R+          SS+
Sbjct: 238 GHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTH-FTYSSV 296

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + ACA+   LE GK +H  +I  G +   FI N ++DMYAK   I  AK +F R+ + DV
Sbjct: 297 LSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDV 356

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           VSW +++ G AQHG  +ETL  +++M+  G++PNE++F+ ++ ACSH GL+ +G   F+ 
Sbjct: 357 VSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFE- 415

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           +++ Y + P + HY   +DLL R G LD AE  I+ MP EP    W ALL AC+ H+N E
Sbjct: 416 LMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNME 475

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +G   A     L P D    +LLSN+YASA  W+ V+KVRK+M    VKK+P  S++E  
Sbjct: 476 LGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIE 535

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
              H+F A + +HP   EI     E+  ++K  GYVPDTS VL  ++Q+E+E +L +HSE
Sbjct: 536 NAVHLFVANDETHPRIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSE 595

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           +LA+A+ LL +  G+ +R+ KN+RVCGDCH  +K +S++  REI+VRD  R+H F+DG
Sbjct: 596 KLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKVVDREIIVRDTNRFHRFRDG 653



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 180/355 (50%), Gaps = 41/355 (11%)

Query: 73  ASILTAYNQANLPQKTISIFSTML-ALDKLQ-----PDHFVFASLVKACGSLGATRLGKQ 126
           A+    +   +L +K+ S   T L ALD +Q     PD+ +++ L+K C  LG    G+ 
Sbjct: 49  AASFCVFQDKDLLRKSQSDGGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRI 108

Query: 127 VHACFVLSPFCDDDVV-KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           VHA  V S F D+ +V ++ +V+MYAKCG  ++AR                         
Sbjct: 109 VHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDAR------------------------- 143

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
                  +F++ P +++  WTAL++G  Q+    DA   F +M R G    +   LSS++
Sbjct: 144 ------RMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQ-PNHFTLSSLL 196

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            A  +   L+ G Q+H   +  GY+S +++ +A+VDMYA+C  + AA+  F  M  K  V
Sbjct: 197 KASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEV 256

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SW ++I G A+ G+ E  L L  +M     +P   T+  ++ AC+ +G + +G+ +   M
Sbjct: 257 SWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHM 316

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           I+  G+         LLD+ +++G +D+A+ +   +  +PD  +W  +L+ C  H
Sbjct: 317 IKS-GLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQH 369


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/607 (36%), Positives = 358/607 (58%), Gaps = 9/607 (1%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAY---GKCDLVQYAHHLLEE 63
           LH L+ C+  +    ++ +H Q++K GL     +P + + A+        + YA  + + 
Sbjct: 22  LHLLQRCSNME---ELRQIHGQMLKTGL-ILDEIPASKLLAFCASPNSGSLAYARTVFDR 77

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           + + +   W +++  Y+ +  P++ + ++  ML    +  + + F  L+KAC S+ A+  
Sbjct: 78  IFRPNTFMWNTMIRGYSNSKEPEEALLLYHHML-YHSVPHNAYTFPFLLKACSSMSASEE 136

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
            +Q+HA  +   F  +    +SL+++Y+K G   +AR +FD +  +++VSW +M+  Y +
Sbjct: 137 TQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTK 196

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            G  + A EIF   P RN+  WT+++SG V +    +A   F  M+  G+ + D + L S
Sbjct: 197 CGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKL-DNVALVS 255

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
            + ACA+  VL+ GK IH  +     E    +   ++DMYAKC D+  A ++F +M  K 
Sbjct: 256 TLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKG 315

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           V  WT++I G A HG+  E L  + +M +AGV+PN++TF G++ ACSH GLV + + LF+
Sbjct: 316 VSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFE 375

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
           SM   +G  PS++HY C++DLL R+G L EAE LI+ MP +P+   W ALL+AC  H N 
Sbjct: 376 SMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNL 435

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           E+G ++   L+ + P     YI L++++A+A  W   ++VR+ M    V K PG S I  
Sbjct: 436 ELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISV 495

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
              +H F AG+ SHP   EI  +L ++   ++  GY P    +L D+E KEKE  +  HS
Sbjct: 496 NGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHS 555

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           E+LAV +GL+ + PG  +R+VKNLRVC DCH V+K+IS++  REI++RD TR+H FKDG 
Sbjct: 556 EKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGN 615

Query: 604 CSCNDFW 610
           C+C D+W
Sbjct: 616 CTCGDYW 622


>gi|356507248|ref|XP_003522381.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Glycine max]
          Length = 635

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/592 (38%), Positives = 335/592 (56%), Gaps = 24/592 (4%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA------------NLPQKTI 89
           N LI +Y +C  +  A  + E+M  +  V+W SIL A+ +              +PQ   
Sbjct: 45  NKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQLFEKIPQPNT 104

Query: 90  SIFSTMLA-----LDKLQPDHFVFASLVKACGSLGA-----TRLGKQVHACFVLSPFCDD 139
             ++ MLA     L       F  +  +K   S         ++G    A  + S   + 
Sbjct: 105 VSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEARRLFSAMPEK 164

Query: 140 DVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           + V  S++V  Y  CG  + A   F +  +++ ++WTAM++ Y + GR + A  +F++  
Sbjct: 165 NCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVELAERLFQEMS 224

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
           +R L  W A+++G V++    D    F  M   GV   + L L+S++  C+N + L+LGK
Sbjct: 225 MRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVK-PNALSLTSVLLGCSNLSALQLGK 283

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           Q+H LV      S      ++V MY+KC D+  A ++F ++ RKDVV W ++I G AQHG
Sbjct: 284 QVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQHG 343

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
             ++ L L+DEM   G+KP+ +TFV ++ AC+H GLV  G + F +M  D+GI    +HY
Sbjct: 344 AGKKALRLFDEMKKEGLKPDWITFVAVLLACNHAGLVDLGVQYFNTMRRDFGIETKPEHY 403

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
            C++DLL R+G L EA +LIK+MPF+P    +  LL AC+ H+N  +    A +LL L P
Sbjct: 404 ACMVDLLGRAGKLSEAVDLIKSMPFKPHPAIYGTLLGACRIHKNLNLAEFAAKNLLELDP 463

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
              + Y+ L+NVYA+   W HV+ +R+ M    V K PGYS+IE     H F + +  HP
Sbjct: 464 TIATGYVQLANVYAAQNRWDHVASIRRSMKDNNVVKIPGYSWIEINSVVHGFRSSDRLHP 523

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
               I E L +L+ +MK  GYVPD   VLHD+ ++ KE+ L WHSE+LA+A+GLLK   G
Sbjct: 524 ELASIHEKLKDLEKKMKLAGYVPDLEFVLHDVGEELKEQLLLWHSEKLAIAFGLLKVPLG 583

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             +RV KNLRVCGDCH   K IS I  REI+VRD TR+HHFKDG CSC D+W
Sbjct: 584 VPIRVFKNLRVCGDCHSATKYISTIEGREIIVRDTTRFHHFKDGFCSCRDYW 635



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 157/330 (47%), Gaps = 28/330 (8%)

Query: 136 FCDDDVVKSS-LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS-GRKKDAMEI 193
           F +++V+ S+ L+  Y +CG  ++A  VF+ +K+K++V+W ++L+A+A+  G  + A ++
Sbjct: 36  FNNNNVIASNKLIASYVRCGDIDSAVRVFEDMKVKSTVTWNSILAAFAKKPGHFEYARQL 95

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV----DIVDPLVLSSIVGACA 249
           FE+ P  N   +  +++         DA   F  M  + V     ++  L    ++G   
Sbjct: 96  FEKIPQPNTVSYNIMLACHWHHLGVHDARGFFDSMPLKDVASWNTMISALAQVGLMGEAR 155

Query: 250 N-FAVLELGKQIHGLVIALGYESC-----------------LFISNAIVDMYAKCSDIIA 291
             F+ +     +    +  GY +C                 +    A++  Y K   +  
Sbjct: 156 RLFSAMPEKNCVSWSAMVSGYVACGDLDAAVECFYAAPMRSVITWTAMITGYMKFGRVEL 215

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           A+ +F  M  + +V+W ++I G  ++G+AE+ L L+  M+  GVKPN ++   ++  CS+
Sbjct: 216 AERLFQEMSMRTLVTWNAMIAGYVENGRAEDGLRLFRTMLETGVKPNALSLTSVLLGCSN 275

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
           +  +  G+++ + ++    ++      T L+ + S+ G L +A  L   +P   D   W 
Sbjct: 276 LSALQLGKQVHQ-LVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIP-RKDVVCWN 333

Query: 412 ALLSACKHHRNTEMGTRVANHLL--SLKPE 439
           A++S    H   +   R+ + +    LKP+
Sbjct: 334 AMISGYAQHGAGKKALRLFDEMKKEGLKPD 363



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 1/104 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  + K  L        +L+  Y KC  ++ A  L  ++P++D V W ++++ Y Q 
Sbjct: 283 KQVHQLVCKCPLSSDTTAGTSLVSMYSKCGDLKDAWELFIQIPRKDVVCWNAMISGYAQH 342

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
              +K + +F  M   + L+PD   F +++ AC   G   LG Q
Sbjct: 343 GAGKKALRLFDEM-KKEGLKPDWITFVAVLLACNHAGLVDLGVQ 385


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/602 (37%), Positives = 343/602 (56%), Gaps = 44/602 (7%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
            +L+  Y +  L+  A  L ++MP+R+HVS+  +L     A    +   +F  M      
Sbjct: 116 TSLLRGYVRHGLLADAIRLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEM------ 169

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNAR 160
            PD  V A      G   A R+  +  A F   P    +VV  ++++  YA+ G  N AR
Sbjct: 170 -PDRDVVAWTAMLSGYCQAGRI-TEARALFDEMP--KRNVVSWTAMISGYAQNGEVNLAR 225

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP---------------------- 198
            +F+ +  +N VSWTAML  Y ++G  +DA E+F   P                      
Sbjct: 226 KLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDA 285

Query: 199 VRNLF---------LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            + +F          W+A++    Q+   ++A  +F EM   GV    P V+S I+  CA
Sbjct: 286 AKTVFEKMCERDDGTWSAMIKAYEQNEFLMEALSTFREMLWRGVRPNYPSVIS-ILTVCA 344

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
             AVL+ G+++H  ++   ++  +F  +A++ MY KC ++  AK +F     KD+V W S
Sbjct: 345 ALAVLDYGREVHAAMLRCSFDMDVFAVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNS 404

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G AQHG  E+ L ++ +M  AG+ P+ +T++G + ACS+ G V +GR++F SM  + 
Sbjct: 405 MITGYAQHGLGEQALGIFHDMRLAGMSPDGITYIGALTACSYTGKVKEGREIFNSMTVNS 464

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            I P  +HY+C++DLL RSG ++EA +LIK MP EPD   W AL+ AC+ HRN E+    
Sbjct: 465 SIRPGAEHYSCMVDLLGRSGLVEEAFDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFA 524

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  LL L+P +   Y+LLS++Y S   W+  SK+RK +S   + K PG S+IE+ K  H+
Sbjct: 525 AKKLLELEPGNAGPYVLLSHIYTSVGRWEDASKMRKFISSRNLNKSPGCSWIEYDKRVHL 584

Query: 490 FYAGET-SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
           F +G+  +HP    I  +L +LD  +   GY  D S VLHD+++++K   L +HSER AV
Sbjct: 585 FTSGDVLAHPEHAAILRILEKLDGLLMESGYSADGSFVLHDIDEEQKSHSLRYHSERQAV 644

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           AYGLLK   G  +RV+KNLRVCGDCH  +K+I++IT REI++RDA R+HHFKDG CSC D
Sbjct: 645 AYGLLKIPEGMPIRVMKNLRVCGDCHSAIKLIAKITSREIILRDANRFHHFKDGFCSCRD 704

Query: 609 FW 610
           +W
Sbjct: 705 YW 706



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 175/403 (43%), Gaps = 35/403 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N  I    +   ++ A    E MP R   S+ ++L  Y +  LP   + +F  M + D  
Sbjct: 21  NARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRD-- 78

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLS-PFCDDDVVKSSLVDMYAKCGLPNNAR 160
                  AS       L   R      A  + S PF    V  +SL+  Y + GL  +A 
Sbjct: 79  ------LASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAI 132

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            +F  +  +N VS+T +L     +GR  +A  +F++ P R++  WTA++SG  Q+    +
Sbjct: 133 RLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITE 192

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACAN-----FAVLELGKQIHGLVIALGY------ 269
           A   F EM +  V     ++         N     F V+    ++    + +GY      
Sbjct: 193 ARALFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHV 252

Query: 270 -----------ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
                      E  +   NA++  + +   + AAK +F +M  +D  +W+++I    Q+ 
Sbjct: 253 EDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQNE 312

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
              E L+ + EM+  GV+PN  + + ++  C+ + ++  GR++  +M+        +   
Sbjct: 313 FLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-CSFDMDVFAV 371

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEP-DEPTWAALLSACKHH 420
           + L+ +  + G+LD+A+ +     FEP D   W ++++    H
Sbjct: 372 SALITMYIKCGNLDKAKRVFHT--FEPKDIVMWNSMITGYAQH 412


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 232/602 (38%), Positives = 336/602 (55%), Gaps = 34/602 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VC +     T   +H  +IK GL     + N LI+ Y K   ++ A    ++M   D 
Sbjct: 323 LPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDV 382

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW SI+ AY Q + P      F  M  L+  QPD     SL          +  + VH 
Sbjct: 383 VSWNSIIAAYEQNDDPVTAHGFFVKM-QLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHG 441

Query: 130 CFVLSPFCDDDVV-KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
             +   +  +DVV  +++VDMYAK GL ++A                             
Sbjct: 442 FIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAH---------------------------- 473

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
              ++FE  PV+++  W  L++G  Q+    +A   +  M      I +     SI+ A 
Sbjct: 474 ---KVFEIIPVKDVISWNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAY 530

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A+   L+ G +IHG VI       +F++  ++D+Y KC  ++ A  +F ++ ++  V+W 
Sbjct: 531 AHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWN 590

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           +II     HG AE+TL L+ EM+  GVKP+ VTFV L+ ACSH G V +G+  F+ ++++
Sbjct: 591 AIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFR-LMQE 649

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YGI PSL+HY C++DLL R+G+L+ A + IK MP +PD   W ALL AC+ H N E+G  
Sbjct: 650 YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKF 709

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            ++ L  +  ++   Y+LLSN+YA+   W+ V KVR L     +KK PG+S IE  +   
Sbjct: 710 ASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSTIEVNRKVD 769

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
           +FY G  SHP   EI+E L  L A+MK  GY+PD S VL D+E+ EKE  L  HSERLA+
Sbjct: 770 VFYTGNQSHPKCKEIYEELRVLTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAI 829

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+G++ + P + +R+ KNLRVCGDCH   K ISRIT+REIVVRD+ R+HHFKDG CSC D
Sbjct: 830 AFGIISTPPKSPIRIFKNLRVCGDCHNATKFISRITQREIVVRDSNRFHHFKDGICSCGD 889

Query: 609 FW 610
           +W
Sbjct: 890 YW 891



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 180/394 (45%), Gaps = 36/394 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LHA ++  G  Q   +   L++ Y     V  +    +++PQ+D  +W S+++AY   
Sbjct: 136 KCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHN 195

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + I  F  +L + +++PD + F  ++KACG+L     G+++H       F  +  V
Sbjct: 196 GHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKACGTLVD---GRKIHCWAFKLGFQWNVFV 252

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SL+ MY++ G    AR++FD +  ++  SW AM+S                       
Sbjct: 253 AASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMIS----------------------- 289

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                   GL+Q+ N   A     EMR EG+ + + + + SI+  C     +     IH 
Sbjct: 290 --------GLIQNGNAAQALDVLDEMRLEGIKM-NFVTVVSILPVCPQLGDISTAMLIHL 340

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            VI  G E  LF+SNA+++MYAK  ++  A+  F +M   DVVSW SII    Q+     
Sbjct: 341 YVIKHGLEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVT 400

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
               + +M   G +P+ +T V L    +        R +   ++    +   +     ++
Sbjct: 401 AHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVV 460

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           D+ ++ G LD A  + + +P + D  +W  L++ 
Sbjct: 461 DMYAKLGLLDSAHKVFEIIPVK-DVISWNTLITG 493



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 158/337 (46%), Gaps = 45/337 (13%)

Query: 105 HFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFD 164
           +F+F S  K       T   K +HA  V++       + + LV++YA  G  + +R  FD
Sbjct: 123 NFLFDSSTK-------TPFAKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFD 175

Query: 165 SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS 224
            I  K+  +W +M+SAY  +G   +A+  F Q               L+ S    D FY+
Sbjct: 176 QIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQL--------------LLVSEIRPD-FYT 220

Query: 225 FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284
           F            P VL     AC     L  G++IH     LG++  +F++ +++ MY+
Sbjct: 221 F------------PPVLK----ACG---TLVDGRKIHCWAFKLGFQWNVFVAASLIHMYS 261

Query: 285 KCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVG 344
           +      A+ +F  M  +D+ SW ++I G  Q+G A + L + DEM   G+K N VT V 
Sbjct: 262 RFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVS 321

Query: 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE 404
           ++  C  +G +     +   +I+ +G+   L     L+++ ++ G+L++A    + M F 
Sbjct: 322 ILPVCPQLGDISTAMLIHLYVIK-HGLEFDLFVSNALINMYAKFGNLEDARKAFQQM-FI 379

Query: 405 PDEPTWAALLSACKHHRN--TEMGTRVANHLLSLKPE 439
            D  +W ++++A + + +  T  G  V   L   +P+
Sbjct: 380 TDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPD 416


>gi|414872095|tpg|DAA50652.1| TPA: hypothetical protein ZEAMMB73_776700 [Zea mays]
          Length = 647

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/569 (37%), Positives = 324/569 (56%), Gaps = 33/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N LI  Y K   ++ A  L +EMP R+  +W +++     + L ++++  F  M   + +
Sbjct: 112 NILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFFAMRR-EGM 170

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           QPD +   SL + C  L     G+QVHA  V S    D  V SSL  MY +CG   +  A
Sbjct: 171 QPDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEA 230

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
              ++   N VS    +S   ++G  + A+E                             
Sbjct: 231 ALRALPSLNIVSCNTTISGRTQNGDAEGALEF---------------------------- 262

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  MR  GV+  + +   S V +C++ A L  G+QIH L I  G +  + +  ++V 
Sbjct: 263 ---FCLMRGAGVE-ANAVTFVSAVTSCSDLAALAQGQQIHALAIKTGVDKVVPVMTSLVH 318

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY++C  +  ++ +       D+V  +++I     HG  ++ + L+ +M++AG +PNEVT
Sbjct: 319 MYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVT 378

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+ L+YACSH GL  +G   F+ M + YG+ PS++HYTC++DLL RSG L+EAE+LI +M
Sbjct: 379 FLTLLYACSHSGLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLGRSGCLNEAEDLILSM 438

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P +PD   W  LLSACK  +  +M  R+A  ++ L P D +SY+LLSN+ A+++ W+ VS
Sbjct: 439 PVQPDGVIWKTLLSACKTQKKFDMAERIAERVIELDPHDSASYVLLSNIRATSSRWEDVS 498

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           KVR+ M    V+KEPG S++E     H F  G+ SH  + EI E L E+   +++ GY P
Sbjct: 499 KVRETMREQNVRKEPGVSWVELKGQIHQFCTGDESHSRQREIVECLEEMMTRIRQCGYAP 558

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           D S V HDME +EKE  L  HSE+LA+A+  L    G  +RV+KNLRVC DCH+ +K++S
Sbjct: 559 DMSMVFHDMEDEEKEVSLAHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHVAIKLMS 618

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++  REIVVRD +R+HHFKDGKCSC D+W
Sbjct: 619 KVIGREIVVRDVSRFHHFKDGKCSCGDYW 647



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 176/396 (44%), Gaps = 53/396 (13%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
           +F+ + +AC +L   R   Q+HA    S    D    + L+  YA  G    AR +F+ I
Sbjct: 47  LFSHIFRACQALPLLR---QLHAFAATSGAAADRFTANHLLLAYADLGDFPTARGLFERI 103

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
             +N +SW  ++  Y ++G  + A ++F++ P RN+  W A+V+GL  S    ++   F 
Sbjct: 104 PKRNVMSWNILIGGYVKNGDLETARKLFDEMPARNVATWNAMVAGLTNSGLNEESLGFFF 163

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            MRREG+   D   L S+   CA    +  G+Q+H  V+  G +  + + +++  MY +C
Sbjct: 164 AMRREGMQ-PDEYGLGSLFRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRC 222

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             +   +     +   ++VS  + I G  Q+G AE  L  +  M  AGV+ N VTFV  +
Sbjct: 223 GFLRDGEAALRALPSLNIVSCNTTISGRTQNGDAEGALEFFCLMRGAGVEANAVTFVSAV 282

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN---------- 396
            +CS +  + +G+++    I+  G+   +   T L+ + SR G L ++E           
Sbjct: 283 TSCSDLAALAQGQQIHALAIKT-GVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDL 341

Query: 397 -----LIKAMPF-------------------EPDEPTWAALLSACKHHRNTEMGTRVANH 432
                +I A  F                   EP+E T+  LL AC H             
Sbjct: 342 VLCSAMISAYGFHGHGQKAVGLFKQMMAAGAEPNEVTFLTLLYACSHS------------ 389

Query: 433 LLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
              LK E  + + L++  Y      +H + +  L+ 
Sbjct: 390 --GLKDEGMNCFELMTKTYGLQPSVKHYTCIVDLLG 423



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 46/187 (24%), Positives = 88/187 (47%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            R CA  +  ++ + +HA +++ GL +   + ++L   Y +C  ++     L  +P  + 
Sbjct: 181 FRCCAGLRDVVSGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGFLRDGEAALRALPSLNI 240

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS  + ++   Q    +  +  F  M     ++ +   F S V +C  L A   G+Q+HA
Sbjct: 241 VSCNTTISGRTQNGDAEGALEFFCLMRGAG-VEANAVTFVSAVTSCSDLAALAQGQQIHA 299

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +       V +SLV MY++CG   ++  V       + V  +AM+SAY   G  + 
Sbjct: 300 LAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFHGHGQK 359

Query: 190 AMEIFEQ 196
           A+ +F+Q
Sbjct: 360 AVGLFKQ 366



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 10/175 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA  IK G+ +  P+  +L+  Y +C  +  +  +  E    D V  +++++AY   
Sbjct: 295 QQIHALAIKTGVDKVVPVMTSLVHMYSRCGCLGDSERVCLEYSGTDLVLCSAMISAYGFH 354

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL--SPFCDDD 140
              QK + +F  M+A    +P+   F +L+ AC   G   L  +   CF L    +    
Sbjct: 355 GHGQKAVGLFKQMMAAGA-EPNEVTFLTLLYACSHSG---LKDEGMNCFELMTKTYGLQP 410

Query: 141 VVK--SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKKDAME 192
            VK  + +VD+  + G  N A  +  S+ ++ + V W  +LSA  ++ +K D  E
Sbjct: 411 SVKHYTCIVDLLGRSGCLNEAEDLILSMPVQPDGVIWKTLLSA-CKTQKKFDMAE 464


>gi|224131508|ref|XP_002328557.1| predicted protein [Populus trichocarpa]
 gi|222838272|gb|EEE76637.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/625 (35%), Positives = 348/625 (55%), Gaps = 36/625 (5%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLID--AYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           T K +HA ++KLGL     +   L+   A    D + YA  L    P  D     +++  
Sbjct: 20  TFKQIHANVLKLGLESDPFIAGKLLHHCAISLSDSLDYACRLFRYTPNPDVFMHNTLIRG 79

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
             +++ PQ ++  F  M       PD F FA +VKA  +L + R+G Q+H   ++     
Sbjct: 80  LYESDRPQDSLLKFIEMRRNSFSPPDSFSFAFIVKAAANLRSVRVGIQLHCQALVHGLDT 139

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
              V ++L+ MY +CG    AR VFD +   N+++W AM++A  R G  K   E+F+  P
Sbjct: 140 HLFVGTTLISMYGECGFVGFARKVFDEMPEPNAIAWNAMVTACCRGGDMKGGRELFDLMP 199

Query: 199 VRNLFLWTALVSGLVQS---------------RNEI----------------DAFYSFIE 227
           VRNL  W  +++G  ++               ++++                +AF  F E
Sbjct: 200 VRNLMSWNVMLAGYTKAGELELAREMFLEMPMKDDVSWSTMIVGFAHNGYFEEAFSFFRE 259

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           ++R+G+   +   L+ ++ ACA    LE GK +HG +   G    + ++NA++D Y+KC 
Sbjct: 260 LQRKGMR-PNETSLTGVLSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCG 318

Query: 288 DIIAAKDIFGR-MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
           +++ A+ +F R M  +++VSWTS++   A HG  EE + ++ +M  +G++P+E+ F+ L+
Sbjct: 319 NVLMAQLVFERIMNERNIVSWTSMMAALAMHGHGEEAIGIFHKMEESGIRPDEIAFISLL 378

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
           YACSH GLV +G + F  M   Y I PS++HY C++DL  R+G L +A   +  MP    
Sbjct: 379 YACSHAGLVEQGCEYFDKMKGMYNIEPSIEHYGCMVDLYGRAGQLQKAYEFVCQMPIPCT 438

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKL 466
              W  LL AC  H + ++  +V   L  L P + S ++LLSN YA A  W+  + VR+ 
Sbjct: 439 AIIWRTLLGACSMHGDVKLAEQVKERLSELDPNNSSDHVLLSNAYAVAGKWKDAASVRRS 498

Query: 467 MSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK-RRGYVPDTSS 525
           M+   + K PG+S IE  K  + F AG   + + +E ++ L E+   ++   GYVP+   
Sbjct: 499 MTEQRITKTPGWSMIEVDKIMYTFLAGTKQYKITEEAYKKLKEIIRRLRVEGGYVPEIGR 558

Query: 526 VLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITK 585
           VLHD+E++EKE  +  HSE+LAVA+G+ +   G  +R+VKNLR+C DCH VMK+IS+I K
Sbjct: 559 VLHDIEEEEKEGSVSVHSEKLAVAFGIARLCKGRTIRIVKNLRICRDCHAVMKLISQIYK 618

Query: 586 REIVVRDATRYHHFKDGKCSCNDFW 610
            EIVVRD +R+H FKDG CSC D+W
Sbjct: 619 VEIVVRDRSRFHSFKDGYCSCRDYW 643



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 82/193 (42%), Gaps = 10/193 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE-MPQRD 68
           L  CA+       K LH  I K GL     + N L+D Y KC  V  A  + E  M +R+
Sbjct: 276 LSACAQAGALEFGKILHGFIEKSGLAWIVSVNNALLDTYSKCGNVLMAQLVFERIMNERN 335

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG---- 124
            VSW S++ A       ++ I IF  M     ++PD   F SL+ AC   G    G    
Sbjct: 336 IVSWTSMMAALAMHGHGEEAIGIFHKM-EESGIRPDEIAFISLLYACSHAGLVEQGCEYF 394

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYAR 183
            ++   + + P  +       +VD+Y + G    A      + +   ++ W  +L A + 
Sbjct: 395 DKMKGMYNIEPSIEH---YGCMVDLYGRAGQLQKAYEFVCQMPIPCTAIIWRTLLGACSM 451

Query: 184 SGRKKDAMEIFEQ 196
            G  K A ++ E+
Sbjct: 452 HGDVKLAEQVKER 464


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/605 (35%), Positives = 339/605 (56%), Gaps = 34/605 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   +  CA+ +     + +HA +          L N+LI  Y KC  V  A ++ ++M 
Sbjct: 54  YRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMR 113

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           ++D VSW S++  Y Q ++P + I +   ML   + +P+ F FASL+KA G+   +  G+
Sbjct: 114 RKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLK-GRFKPNGFTFASLLKAAGAYADSGTGR 172

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q+HA  V   + +D  V S+L+DMYA                               R G
Sbjct: 173 QIHALAVKCGWHEDVYVGSALLDMYA-------------------------------RCG 201

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
           +   A  +F++   +N   W AL+SG  +  +   A  +F EM R G +       SS+ 
Sbjct: 202 KMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATH-FTYSSVF 260

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            + A    LE GK +H  VI    +   F+ N ++DMYAK   +I A+ +F R+  KD+V
Sbjct: 261 SSIARLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLV 320

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +W S++   AQ+G  +E ++ ++EM  +GV  N++TF+ ++ ACSH GLV +G++ F+ M
Sbjct: 321 TWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACSHGGLVKEGKRYFE-M 379

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
           +++Y + P + HY  ++ LL R+G L+ A   I  MP EP    W ALL+AC+ H+N ++
Sbjct: 380 MKEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKV 439

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G   A+H+  L P+D    +LL N+YAS   W   ++VR +M    VKKEP  S++E   
Sbjct: 440 GQFAADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRMMMKTTGVKKEPACSWVEMEN 499

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H+F A + +HP  +EI+++  E+  ++++ GYVPD   VL  ++ +EKE  L +HSE+
Sbjct: 500 SVHMFVANDDTHPQAEEIYKMWGEISKKIRKEGYVPDMDYVLLHVDDQEKEANLQYHSEK 559

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+A+ L++   G  +R++KN+R+CGDCH   K IS++  REIVVRD  R+HHF  G CS
Sbjct: 560 LALAFALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSSGSCS 619

Query: 606 CNDFW 610
           C D+W
Sbjct: 620 CGDYW 624



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 163/343 (47%), Gaps = 37/343 (10%)

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
           +L   +L P   V+ S + AC         +++HA    S F  D  + +SL+ MY KC 
Sbjct: 41  LLDAGELAPTPRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCR 100

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
              +AR VFD ++ K+ VSWT++++ YA++             PV  +     L+ G+++
Sbjct: 101 SVLDARNVFDQMRRKDMVSWTSLIAGYAQN-----------DMPVEAI----GLLPGMLK 145

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF 274
            R + + F                   +S++ A   +A    G+QIH L +  G+   ++
Sbjct: 146 GRFKPNGF-----------------TFASLLKAAGAYADSGTGRQIHALAVKCGWHEDVY 188

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
           + +A++DMYA+C  +  A  +F ++  K+ VSW ++I G A+ G  E  L  + EM+  G
Sbjct: 189 VGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNG 248

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
            +    T+  +  + + +G + +G+ +   +I+      +    T LLD+ ++SG + +A
Sbjct: 249 FEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLTAFVGNT-LLDMYAKSGSMIDA 307

Query: 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
             +   +    D  TW ++L+A   +    +G    +H   ++
Sbjct: 308 RKVFDRVD-NKDLVTWNSMLTAFAQY---GLGKEAVSHFEEMR 346



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/218 (29%), Positives = 108/218 (49%), Gaps = 4/218 (1%)

Query: 238 PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297
           P V  S + ACA    LE  ++IH  + +  +    F+ N+++ MY KC  ++ A+++F 
Sbjct: 51  PRVYRSFITACAQSKNLEDARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFD 110

Query: 298 RMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357
           +MRRKD+VSWTS+I G AQ+    E + L   M+    KPN  TF  L+ A       G 
Sbjct: 111 QMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGT 170

Query: 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417
           GR++    ++  G    +   + LLD+ +R G +D A  +   +    +  +W AL+S  
Sbjct: 171 GRQIHALAVK-CGWHEDVYVGSALLDMYARCGKMDMATAVFDKLD-SKNGVSWNALISGF 228

Query: 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
               + E        +L    E  +++   S+V++S A
Sbjct: 229 ARKGDGESALMTFAEMLRNGFE--ATHFTYSSVFSSIA 264


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/605 (35%), Positives = 334/605 (55%), Gaps = 12/605 (1%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   L  CAR       K LH Q+I+   H    + + +++ Y KC   + A  +   + 
Sbjct: 294 YTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKRVFSSLR 353

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            R+ VSW  ++  + Q     +++ +F+ M A + +  D F  A+L+  C +     LG 
Sbjct: 354 DRNSVSWTVLIGGFLQYGCFSESVELFNQMRA-ELMAVDQFALATLISGCCNTMDICLGS 412

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q+H+  + S      VV +SL+ MYAKCG   NA  +F+ +  ++ VSWT M++AY++ G
Sbjct: 413 QLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVG 472

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
               A E F+    RN+  W A++   +Q   E D    + +M  E   I D +   ++ 
Sbjct: 473 NIAKAREFFDDMSTRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLF 532

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
             CA+    +LG QI G  + +G      + NA++ MY+KC  I  A+  F  + RKD+V
Sbjct: 533 RGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEARKAFDFLSRKDLV 592

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SW ++I G +QHG  ++ + ++D++++ G KP+ +++V ++  CSH GLV +G+  F  M
Sbjct: 593 SWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHSGLVEEGKFYFDMM 652

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
             D+ I+P L+H++C++DLL R+GHL EA+NLI  MP +P    W ALLSACK H N ++
Sbjct: 653 KRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGALLSACKTHGNNDL 712

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
               A HL  L       Y+LL+ +YA A      ++VRKLM    +KK PGYS++E   
Sbjct: 713 AELAAKHLFDLDSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRDKGIKKSPGYSWMEVNN 772

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H+F A + SHP    I E L EL  ++   GYV           + E  R    HSE+
Sbjct: 773 RVHVFKAEDVSHPQVIAIREKLDELMEKIAHLGYV-----------RTESPRSEIHHSEK 821

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LAVA+G++       + ++KNLR+C DCH V+K+IS +T RE V+RD  R+HHFK G CS
Sbjct: 822 LAVAFGIMSLPAWMPIHIMKNLRICDDCHTVIKLISTVTDREFVIRDGVRFHHFKGGSCS 881

Query: 606 CNDFW 610
           C D+W
Sbjct: 882 CMDYW 886



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/441 (28%), Positives = 211/441 (47%), Gaps = 39/441 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE------ 63
           LR C         +TLH+++I +GL     L NTL+ AY  C  +  A +LL +      
Sbjct: 32  LRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPN 91

Query: 64  --------------------------MPQRDHVSWASILTAYNQANLPQKTISIFSTMLA 97
                                     MP RD  SW +I++ Y Q+      + IF +M  
Sbjct: 92  VITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQ 151

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF--CDDDVVKSSLVDMYAKCGL 155
                P+ F F  ++K+CG+LG   +  Q+    +LS F   DD  V+++LVDM  +CG 
Sbjct: 152 TGDSLPNAFTFGCVMKSCGALGWHEVALQLLG--LLSKFDSQDDPDVQTALVDMLVRCGA 209

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
            + A   F  IK    +   +ML  YA+S     A+EIF+  P R++  W  ++S L +S
Sbjct: 210 MDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKS 269

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI 275
               +A    ++M  +GV   D    +S + ACA  + LE GKQ+H  VI        ++
Sbjct: 270 GRVREALDMVVDMHGKGVR-PDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYV 328

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
           ++A+V++YAKC     AK +F  +R ++ VSWT +I G  Q+G   E++ L+++M +  +
Sbjct: 329 ASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELM 388

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
             ++     LI  C +   +  G +L  S+    G T ++     L+ + ++ G+L  AE
Sbjct: 389 AVDQFALATLISGCCNTMDICLGSQL-HSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAE 447

Query: 396 NLIKAMPFEPDEPTWAALLSA 416
            +   M  E D  +W  +++A
Sbjct: 448 LIFNFMA-ERDIVSWTGMITA 467



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 204/443 (46%), Gaps = 73/443 (16%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+++  Y K   V +A  + + MP+RD VSW  +++A +++   ++ + +   M     +
Sbjct: 229 NSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHG-KGV 287

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PD   + S + AC  L +   GKQ+H   + +    D  V S++V++YAKCG    A+ 
Sbjct: 288 RPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEAKR 347

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF S++ +NSVSWT ++  + + G   +++E+F Q                         
Sbjct: 348 VFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQ------------------------- 382

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
                 MR E +  VD   L++++  C N   + LG Q+H L +  G+   + +SN+++ 
Sbjct: 383 ------MRAE-LMAVDQFALATLISGCCNTMDICLGSQLHSLCLKSGHTRAVVVSNSLIS 435

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA-------------------------- 315
           MYAKC ++  A+ IF  M  +D+VSWT +I   +                          
Sbjct: 436 MYAKCGNLQNAELIFNFMAERDIVSWTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAM 495

Query: 316 -----QHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
                QHG  E+ L +Y +M++   V P+ VT+V L   C+ +G    G ++    ++  
Sbjct: 496 LGAYIQHGAEEDGLKMYSDMLTEKDVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVK-V 554

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF--EPDEPTWAALLSACKHHRNTEMGT 427
           G+         ++ + S+ G + EA    KA  F    D  +W A+++    H   +   
Sbjct: 555 GLILDTSVVNAVITMYSKCGRISEAR---KAFDFLSRKDLVSWNAMITGYSQHGMGKQAI 611

Query: 428 RVANHLLS--LKPEDPSSYILLS 448
            + + +L+   KP+  S   +LS
Sbjct: 612 EIFDDILNKGAKPDYISYVAVLS 634



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 155/343 (45%), Gaps = 38/343 (11%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF-DSI 166
            A  +++CG+  A    + +H+  +         ++++L+  Y  CG  ++AR +  D I
Sbjct: 28  LADALRSCGARSALTGARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEI 87

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
              N ++   M++ YA+ G   DA+E+F + P R++  W  ++SG  QS   ++A   F+
Sbjct: 88  TEPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFV 147

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM---- 282
            MR+ G  + +      ++ +C      E+  Q+ GL+     +    +  A+VDM    
Sbjct: 148 SMRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRC 207

Query: 283 ---------------------------YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
                                      YAK   +  A +IF  M  +DVVSW  +I   +
Sbjct: 208 GAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALS 267

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
           + G+  E L +  +M   GV+P+  T+   + AC+ +  +  G++L   +I +    P +
Sbjct: 268 KSGRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNL---PHI 324

Query: 376 QHY--TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             Y  + +++L ++ G   EA+ +  ++  + +  +W  L+  
Sbjct: 325 DPYVASAMVELYAKCGCFKEAKRVFSSLR-DRNSVSWTVLIGG 366


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/589 (36%), Positives = 339/589 (57%), Gaps = 34/589 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H+ ++K        + N L+D Y K D +  A  L  EMP+ D +S+  ++T     
Sbjct: 260 QQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWN 319

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++++ +F   L   +     F FA+L+    +     +G+Q+H+  +++    + +V
Sbjct: 320 GRVEESLELFRE-LQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLV 378

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SLVDMYAKC     A  +F  +  ++SV                              
Sbjct: 379 GNSLVDMYAKCDKFGEANRIFADLAHQSSVP----------------------------- 409

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WTAL+SG VQ     D    F+EM R  +   D    +SI+ ACAN A L LGKQ+H 
Sbjct: 410 --WTALISGYVQKGLHEDGLKLFVEMHRAKIG-ADSATYASILRACANLASLTLGKQLHS 466

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +I  G  S +F  +A+VDMYAKC  I  A  +F  M  ++ VSW ++I   AQ+G    
Sbjct: 467 RIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGH 526

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L  +++M+ +G++PN V+F+ ++ ACSH GLV +G + F SM + Y + P  +HY  ++
Sbjct: 527 ALRSFEQMIHSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMV 586

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP-EDP 441
           D+L RSG  DEAE L+  MPFEPDE  W+++L++C+ H+N E+  + A+ L ++K   D 
Sbjct: 587 DMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDA 646

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
           + Y+ +SN+YA+A  W  V KV+K +    ++K P YS++E  + +H+F A +TSHP   
Sbjct: 647 APYVSMSNIYAAAGEWDSVGKVKKALRERGIRKVPAYSWVEIKQKTHVFSANDTSHPQTK 706

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           EI   L EL+ +M+ +GY PD++  LH+++++ K   L +HSER+A+A+ L+ +  G+ +
Sbjct: 707 EITRKLDELEKQMEEQGYKPDSTCALHNVDEEVKVESLKYHSERIAIAFALISTPKGSPI 766

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            V+KNLR C DCH  +K+IS+I  REI VRD++R+HHF DG CSC D+W
Sbjct: 767 LVMKNLRACNDCHAAIKVISKIVNREITVRDSSRFHHFTDGSCSCKDYW 815



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 191/395 (48%), Gaps = 35/395 (8%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           V  +H  ++K+G      + N+L+D+Y K   +  A HL + M ++D+V++ ++LT Y++
Sbjct: 158 VAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSK 217

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
                  I++F  M  L   +P  F FA+++ A   +     G+QVH+  V   F  +  
Sbjct: 218 EGFNHDAINLFFKMQDLG-FRPSEFTFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVF 276

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V ++L+D Y+K      AR +F  +   + +S+  +++  A +GR ++++E+F +     
Sbjct: 277 VANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRE----- 331

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                                  F    R           ++++   AN   LE+G+QIH
Sbjct: 332 ---------------------LQFTRFDRR------QFPFATLLSIAANSLNLEMGRQIH 364

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
              I     S + + N++VDMYAKC     A  IF  +  +  V WT++I G  Q G  E
Sbjct: 365 SQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLHE 424

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           + L L+ EM  A +  +  T+  ++ AC+++  +  G++L   +I   G   ++   + L
Sbjct: 425 DGLKLFVEMHRAKIGADSATYASILRACANLASLTLGKQLHSRIIRS-GCLSNVFSGSAL 483

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +D+ ++ G + EA  + + MP   +  +W AL+SA
Sbjct: 484 VDMYAKCGSIKEALQMFQEMPVR-NSVSWNALISA 517



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 131/259 (50%), Gaps = 3/259 (1%)

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           AR +FD +  KN +S   M+  Y +SG    A  +F+    R++  WT L+ G  Q    
Sbjct: 61  ARKLFDEMPHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRF 120

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
           ++AF  F +M R G+ + D + L++++     F  +    Q+HG V+ +GY+S L + N+
Sbjct: 121 LEAFNLFADMCRHGM-VPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNS 179

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++D Y K   +  A  +F  M  KD V++ +++ G ++ G   + + L+ +M   G +P+
Sbjct: 180 LLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPS 239

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           E TF  ++ A   +  +  G+++  S +       ++     LLD  S+   + EA  L 
Sbjct: 240 EFTFAAVLTAGIQMDDIEFGQQV-HSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLF 298

Query: 399 KAMPFEPDEPTWAALLSAC 417
             MP E D  ++  L++ C
Sbjct: 299 YEMP-EVDGISYNVLITCC 316



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 85/180 (47%), Gaps = 9/180 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   LR CA        K LH++II+ G        + L+D Y KC  ++ A  + +EMP
Sbjct: 445 YASILRACANLASLTLGKQLHSRIIRSGCLSNVFSGSALVDMYAKCGSIKEALQMFQEMP 504

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            R+ VSW ++++AY Q       +  F  M+    LQP+   F S++ AC   G    G 
Sbjct: 505 VRNSVSWNALISAYAQNGDGGHALRSFEQMIH-SGLQPNSVSFLSILCACSHCGLVEEGL 563

Query: 126 Q----VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
           Q    +   + L P  +     +S+VDM  + G  + A  +   +  + + + W+++L++
Sbjct: 564 QYFNSMTQVYKLEPRREH---YASMVDMLCRSGRFDEAEKLMARMPFEPDEIMWSSILNS 620


>gi|359483597|ref|XP_002272690.2| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial [Vitis vinifera]
          Length = 676

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/570 (36%), Positives = 329/570 (57%), Gaps = 33/570 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD-K 100
           N++I  Y     V+    L +EMP R+ +SW S++   +Q    ++ + +F  M+    +
Sbjct: 139 NSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 198

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           ++P    +  ++ AC +  A   G Q+HA      +  D  + ++L+  YA C       
Sbjct: 199 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCK------ 252

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
                                    + +D++ +F      N+ +WTALV+G   +    D
Sbjct: 253 -------------------------QMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHED 287

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
           A   F EM REGV + +    +S + +C     L+ G++IH   + LG E+ +F+ N+++
Sbjct: 288 ALKVFGEMMREGV-LPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLI 346

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
            MY +C ++     IF R+ +K++VSW S+IVG AQHG     LA +++MV + V+P+E+
Sbjct: 347 VMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEI 406

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           TF GL+ ACSH G+  KGR LFK   E+      L HY C++D+L RSG L+EAE LI+ 
Sbjct: 407 TFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRN 466

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           MP + +   W  LLSAC  H   E+  R A  ++ L+P   S+Y+LLSN+YASA+ W  V
Sbjct: 467 MPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDV 526

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
           S++R+ M    + K+PG S+I      + F +G+ SHP  D I++ L  L  ++K  GYV
Sbjct: 527 SRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYV 586

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           PD    LHD+E ++KE  L +HSERLA+ +GL+ +V G+ + V+KNLRVCGDCH  +K+I
Sbjct: 587 PDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLI 646

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++I +R+I+VRD+TR+HHF DG+CSC D+W
Sbjct: 647 AKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 676



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 105/207 (50%), Gaps = 11/207 (5%)

Query: 157 NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
           + AR VFD +   +   +T M++ YAR+ R   A+++F + PV+++  W +++ G     
Sbjct: 28  DEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCA 87

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
           +   A   F EM    V     +  ++++     F  +E+ +   GL   + +   +   
Sbjct: 88  DLTMARKLFDEMPERSV-----VSWTTMINGFLQFGKIEVAE---GLFYKMPFRD-IAAW 138

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG-- 334
           N+++  Y     +     +F  M  ++V+SWTS+I G  QHG++EE L L+ +M+  G  
Sbjct: 139 NSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 198

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKL 361
           VKP   T+  +I AC++   + +G ++
Sbjct: 199 VKPTSSTYCCVITACANASALYQGVQI 225



 Score = 75.5 bits (184), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 1/193 (0%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S Y   +  CA          +HA + KLG      +   LI  Y  C  ++ +  +   
Sbjct: 204 STYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHG 263

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
               + V W +++T Y      +  + +F  M+  + + P+   F S + +C  L A   
Sbjct: 264 KLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMR-EGVLPNQSSFTSALNSCCGLEALDW 322

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G+++H   V      D  V +SL+ MY +CG  N+   +F  I  KN VSW +++   A+
Sbjct: 323 GREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQ 382

Query: 184 SGRKKDAMEIFEQ 196
            G    A+  F Q
Sbjct: 383 HGCGMWALAFFNQ 395



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 89/426 (20%), Positives = 167/426 (39%), Gaps = 72/426 (16%)

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
           + S+ +M++ + R+ R  +A  +F++    +++L+T +++G  ++     A   F EM  
Sbjct: 11  TFSYQSMITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEM-- 68

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290
               + D +  +S++  C +                                   C+D+ 
Sbjct: 69  ---PVKDVVSWNSMIKGCFD-----------------------------------CADLT 90

Query: 291 AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350
            A+ +F  M  + VVSWT++I G  Q G+ E    L+ +M    +        G  Y C+
Sbjct: 91  MARKLFDEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYG--YCCN 148

Query: 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-----PFEP 405
             G V  G +LF+ M        ++  +T ++  L + G  +EA  L + M       +P
Sbjct: 149 --GRVEDGLRLFQEM-----PCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKP 201

Query: 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRK 465
              T+  +++AC +      G ++  H+  L       Y    + Y SAA+    +  ++
Sbjct: 202 TSSTYCCVITACANASALYQGVQIHAHVFKL------GYSF--DAYISAALITFYANCKQ 253

Query: 466 LMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSS 525
           +   + V     +  +         Y     H    ++F        EM R G +P+ SS
Sbjct: 254 MEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHEDALKVF-------GEMMREGVLPNQSS 306

Query: 526 VLHDMEQKEKERQLFWHSE--RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRI 583
               +        L W  E    AV  GL   V      +V   R CG+ +  + +  RI
Sbjct: 307 FTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYR-CGNLNDGVVIFKRI 365

Query: 584 TKREIV 589
           +K+ IV
Sbjct: 366 SKKNIV 371



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H   +KLGL     + N+LI  Y +C  +     + + + +++ VSW S++    Q 
Sbjct: 324 REIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQH 383

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 ++ F+ M+    ++PD   F  L+ AC   G ++ G+ +   F  +   +  + 
Sbjct: 384 GCGMWALAFFNQMVR-SMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLD 442

Query: 143 K-SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
             + +VD+  + G    A  +  ++ +K NS+ W  +LSA
Sbjct: 443 HYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSA 482


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/601 (38%), Positives = 327/601 (54%), Gaps = 36/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA   +    + +HA I K        +   L+D Y KC  +  A ++ +EMP R+ 
Sbjct: 207 LPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNL 266

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S++  + +  L  + I +F  +L+L    PD    +S++ AC  L     GKQVH 
Sbjct: 267 VSWNSMIVGFVKNKLYGRAIGVFREVLSLG---PDQVSISSVLSACAGLVELDFGKQVHG 323

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V         VK+SLVDMY KCGL                                +D
Sbjct: 324 SIVKRGLVGLVYVKNSLVDMYCKCGL-------------------------------FED 352

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A ++F     R++  W  ++ G  + RN   A   F  M REGV+  D    SS+  A A
Sbjct: 353 ATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVE-PDEASYSSLFHASA 411

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           + A L  G  IH  V+  G+     IS+++V MY KC  ++ A  +F   +  +VV WT+
Sbjct: 412 SIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTA 471

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I    QHG A E + L++EM++ GV P  +TFV ++ ACSH G +  G K F SM   +
Sbjct: 472 MITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVH 531

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            I P L+HY C++DLL R G L+EA   I++MPFEPD   W ALL AC  H N EMG  V
Sbjct: 532 NIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREV 591

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  L  L+P++P +Y+LLSN+Y    M +   +VR+LM +  V+KE G S+I+    + +
Sbjct: 592 AERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKNRTFV 651

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F A + SH    EI+ +L +L   +KRRGYV +T    + +E  E E+ L+ HSE+LA+A
Sbjct: 652 FNANDRSHSRTQEIYGMLQKLKELIKRRGYVAETQFATNSVEGSE-EQSLWCHSEKLALA 710

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GLL   PG+ +R+ KNLR CGDCH VMK  S I +REI+VRD  R+H F +G CSC D+
Sbjct: 711 FGLLVLPPGSPVRIKKNLRTCGDCHTVMKFASEIFQREIIVRDINRFHRFTNGSCSCMDY 770

Query: 610 W 610
           W
Sbjct: 771 W 771



 Score =  161 bits (408), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 115/452 (25%), Positives = 204/452 (45%), Gaps = 70/452 (15%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--RDHVSWASILTAYNQA 82
           +H+Q++    H      NTL+  Y KC  + +   L    P    + V+W +++   +++
Sbjct: 119 IHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRS 178

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           N P + ++ F+ M     + P+HF F++++ AC        G+Q+HA      F +D  V
Sbjct: 179 NKPFQALTFFNRMRT-TGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFV 237

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+DMYAKCG    A  VFD +  +N VSW +M+  + ++     A+ +F        
Sbjct: 238 ATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFR------- 290

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                   E+   G D V    +SS++ ACA    L+ GKQ+HG
Sbjct: 291 ------------------------EVLSLGPDQVS---ISSVLSACAGLVELDFGKQVHG 323

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            ++  G    +++ N++VDMY KC     A  +F     +DVV+W  +I+G  +    E+
Sbjct: 324 SIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQ 383

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYAC-------------SHVGLVG--KGRKLFKSMIE 367
               +  M+  GV+P+E ++  L +A              SHV   G  K  ++  S++ 
Sbjct: 384 ACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVT 443

Query: 368 DYGITPSL-----------QH----YTCLLDLLSRSGHLDEAENLIKAMPFE---PDEPT 409
            YG   S+           +H    +T ++ +  + G  +EA  L + M  E   P+  T
Sbjct: 444 MYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYIT 503

Query: 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           + ++LSAC H    + G +  N + ++    P
Sbjct: 504 FVSVLSACSHTGKIDDGFKYFNSMANVHNIKP 535



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 143/284 (50%), Gaps = 8/284 (2%)

Query: 175 TAMLSAYARSGRKKDAMEIFEQAP--VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
             +L  YA+ G     + +F   P    N+  WT L++ L +S     A   F  MR  G
Sbjct: 136 NTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTG 195

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
           +   +    S+I+ ACA+ A+L  G+QIH L+    + +  F++ A++DMYAKC  ++ A
Sbjct: 196 I-YPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLA 254

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
           +++F  M  +++VSW S+IVG  ++      + ++ E++S G  P++V+   ++ AC+ +
Sbjct: 255 ENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACAGL 312

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
             +  G+++  S+++  G+   +     L+D+  + G  ++A  L      + D  TW  
Sbjct: 313 VELDFGKQVHGSIVKR-GLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGG-DRDVVTWNV 370

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPE-DPSSYILLSNVYASAA 455
           ++  C   RN E        ++    E D +SY  L +  AS A
Sbjct: 371 MIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASIA 414



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 99/210 (47%), Gaps = 4/210 (1%)

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           L  ++   A    L+   QIH  ++     + L   N ++ +YAKC  I     +F    
Sbjct: 100 LKHLLNNAAKLKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYP 159

Query: 301 R--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
               +VV+WT++I   ++  +  + L  ++ M + G+ PN  TF  ++ AC+H  L+ +G
Sbjct: 160 HPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEG 219

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
           +++  ++I  +         T LLD+ ++ G +  AEN+   MP   +  +W +++    
Sbjct: 220 QQI-HALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHR-NLVSWNSMIVGFV 277

Query: 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
            ++       V   +LSL P+  S   +LS
Sbjct: 278 KNKLYGRAIGVFREVLSLGPDQVSISSVLS 307


>gi|297740626|emb|CBI30808.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  422 bits (1085), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/570 (36%), Positives = 329/570 (57%), Gaps = 33/570 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD-K 100
           N++I  Y     V+    L +EMP R+ +SW S++   +Q    ++ + +F  M+    +
Sbjct: 123 NSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 182

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           ++P    +  ++ AC +  A   G Q+HA      +  D  + ++L+  YA C       
Sbjct: 183 VKPTSSTYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCK------ 236

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
                                    + +D++ +F      N+ +WTALV+G   +    D
Sbjct: 237 -------------------------QMEDSLRVFHGKLHMNVVIWTALVTGYGLNCKHED 271

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
           A   F EM REGV + +    +S + +C     L+ G++IH   + LG E+ +F+ N+++
Sbjct: 272 ALKVFGEMMREGV-LPNQSSFTSALNSCCGLEALDWGREIHTAAVKLGLETDVFVGNSLI 330

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
            MY +C ++     IF R+ +K++VSW S+IVG AQHG     LA +++MV + V+P+E+
Sbjct: 331 VMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQHGCGMWALAFFNQMVRSMVEPDEI 390

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           TF GL+ ACSH G+  KGR LFK   E+      L HY C++D+L RSG L+EAE LI+ 
Sbjct: 391 TFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLDHYACMVDILGRSGKLEEAEELIRN 450

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           MP + +   W  LLSAC  H   E+  R A  ++ L+P   S+Y+LLSN+YASA+ W  V
Sbjct: 451 MPVKANSMVWLVLLSACTMHSKLEVAERAAKCIIDLEPHCSSAYVLLSNLYASASRWSDV 510

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
           S++R+ M    + K+PG S+I      + F +G+ SHP  D I++ L  L  ++K  GYV
Sbjct: 511 SRIRREMKQRGITKQPGRSWITIKGWRNEFLSGDRSHPSSDRIYQKLEWLGGKLKELGYV 570

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           PD    LHD+E ++KE  L +HSERLA+ +GL+ +V G+ + V+KNLRVCGDCH  +K+I
Sbjct: 571 PDQRFALHDVEDEQKEVMLSYHSERLAIGFGLISTVEGSTITVMKNLRVCGDCHSAIKLI 630

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++I +R+I+VRD+TR+HHF DG+CSC D+W
Sbjct: 631 AKIVRRKIIVRDSTRFHHFMDGRCSCGDYW 660



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/207 (26%), Positives = 105/207 (50%), Gaps = 11/207 (5%)

Query: 157 NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
           + AR VFD +   +   +T M++ YAR+ R   A+++F + PV+++  W +++ G     
Sbjct: 12  DEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEMPVKDVVSWNSMIKGCFDCA 71

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
           +   A   F EM    V     +  ++++     F  +E+ +   GL   + +   +   
Sbjct: 72  DLTMARKLFDEMPERSV-----VSWTTMINGFLQFGKIEVAE---GLFYKMPFRD-IAAW 122

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG-- 334
           N+++  Y     +     +F  M  ++V+SWTS+I G  QHG++EE L L+ +M+  G  
Sbjct: 123 NSMIYGYCCNGRVEDGLRLFQEMPCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVE 182

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKL 361
           VKP   T+  +I AC++   + +G ++
Sbjct: 183 VKPTSSTYCCVITACANASALYQGVQI 209



 Score = 75.1 bits (183), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 49/193 (25%), Positives = 83/193 (43%), Gaps = 1/193 (0%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S Y   +  CA          +HA + KLG      +   LI  Y  C  ++ +  +   
Sbjct: 188 STYCCVITACANASALYQGVQIHAHVFKLGYSFDAYISAALITFYANCKQMEDSLRVFHG 247

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
               + V W +++T Y      +  + +F  M+  + + P+   F S + +C  L A   
Sbjct: 248 KLHMNVVIWTALVTGYGLNCKHEDALKVFGEMMR-EGVLPNQSSFTSALNSCCGLEALDW 306

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G+++H   V      D  V +SL+ MY +CG  N+   +F  I  KN VSW +++   A+
Sbjct: 307 GREIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQ 366

Query: 184 SGRKKDAMEIFEQ 196
            G    A+  F Q
Sbjct: 367 HGCGMWALAFFNQ 379



 Score = 68.6 bits (166), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 88/420 (20%), Positives = 163/420 (38%), Gaps = 72/420 (17%)

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
           M++ + R+ R  +A  +F++    +++L+T +++G  ++     A   F EM      + 
Sbjct: 1   MITDHLRNQRIDEARTVFDKVSFPDVYLYTMMITGYARNYRFDHALQLFYEM-----PVK 55

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           D +  +S++  C +                                   C+D+  A+ +F
Sbjct: 56  DVVSWNSMIKGCFD-----------------------------------CADLTMARKLF 80

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
             M  + VVSWT++I G  Q G+ E    L+ +M    +        G  Y C+  G V 
Sbjct: 81  DEMPERSVVSWTTMINGFLQFGKIEVAEGLFYKMPFRDIAAWNSMIYG--YCCN--GRVE 136

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-----PFEPDEPTWA 411
            G +LF+ M        ++  +T ++  L + G  +EA  L + M       +P   T+ 
Sbjct: 137 DGLRLFQEM-----PCRNVISWTSMIGGLDQHGRSEEALGLFRQMMGCGVEVKPTSSTYC 191

Query: 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
            +++AC +      G ++  H+  L       Y    + Y SAA+    +  +++   + 
Sbjct: 192 CVITACANASALYQGVQIHAHVFKL------GYSF--DAYISAALITFYANCKQMEDSLR 243

Query: 472 VKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDME 531
           V     +  +         Y     H    ++F        EM R G +P+ SS    + 
Sbjct: 244 VFHGKLHMNVVIWTALVTGYGLNCKHEDALKVF-------GEMMREGVLPNQSSFTSALN 296

Query: 532 QKEKERQLFWHSE--RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIV 589
                  L W  E    AV  GL   V      +V   R CG+ +  + +  RI+K+ IV
Sbjct: 297 SCCGLEALDWGREIHTAAVKLGLETDVFVGNSLIVMYYR-CGNLNDGVVIFKRISKKNIV 355



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 76/160 (47%), Gaps = 3/160 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H   +KLGL     + N+LI  Y +C  +     + + + +++ VSW S++    Q 
Sbjct: 308 REIHTAAVKLGLETDVFVGNSLIVMYYRCGNLNDGVVIFKRISKKNIVSWNSVIVGCAQH 367

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 ++ F+ M+    ++PD   F  L+ AC   G ++ G+ +   F  +   +  + 
Sbjct: 368 GCGMWALAFFNQMVR-SMVEPDEITFTGLLSACSHSGMSQKGRCLFKYFSENKSAEVKLD 426

Query: 143 K-SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
             + +VD+  + G    A  +  ++ +K NS+ W  +LSA
Sbjct: 427 HYACMVDILGRSGKLEEAEELIRNMPVKANSMVWLVLLSA 466


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/670 (33%), Positives = 356/670 (53%), Gaps = 72/670 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C           +H  I K+G+ +   + N L+  Y K + +     + ++M  RD 
Sbjct: 282 LRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDA 341

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++  Y+Q  L +++I +F  M+  ++ +PD     S+++ACG LG    GK VH 
Sbjct: 342 VSWNTMICGYSQVGLYEESIKLFMEMV--NQFKPDLLTITSILQACGHLGDLEFGKYVHD 399

Query: 130 CFVLSPF-------------------------------CDDDVVKSSLVDMYAKCGLPNN 158
             + S +                               C D V  +S++++Y + G  + 
Sbjct: 400 YMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDE 459

Query: 159 ARAVFDSIKLK---NSVSWTAMLSA----------------------------------- 180
           A  +F  +K     +SV++  +LS                                    
Sbjct: 460 AMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDM 519

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           YA+ G   D++++FE    R++  W  +++  V S +          MR EGV   D   
Sbjct: 520 YAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGV-TPDMAT 578

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           + SI+  C+  A    GK+IHG +  LG ES + + N +++MY+KC  +  +  +F  M+
Sbjct: 579 MLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK 638

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            KDVV+WT++I     +G+ ++ +  + EM +AG+ P+ V FV +I+ACSH GLV +G  
Sbjct: 639 TKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLN 698

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            F  M +DY I P ++HY C++DLLSRS  LD+AE+ I +MP +PD   W ALLSAC+  
Sbjct: 699 YFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMS 758

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
            +TE+  RV+  ++ L P+D   Y+L+SNVYA+   W  V  +RK +    +KK+PG S+
Sbjct: 759 GDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSW 818

Query: 481 IEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLF 540
           +E     ++F  G       +E+ +LL  L   M + GY+ +   VLHD+++ EK   L 
Sbjct: 819 MEIQNKVYVFGTGTKFSEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILC 878

Query: 541 WHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFK 600
            HSERLA+A+GLL + PGT L+V+KNLRVC DCH V K IS+I +RE++VRDA R+H FK
Sbjct: 879 GHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIXQRELLVRDANRFHVFK 938

Query: 601 DGKCSCNDFW 610
           DG CSC D+W
Sbjct: 939 DGACSCGDYW 948



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 203/411 (49%), Gaps = 37/411 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K++H +++ +G      + N LID Y + + +  A  + EEMP RD VSW S+++ YN  
Sbjct: 194 KSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 253

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + I+     L  + PD +  +S+++ACG LG+   G  +H          D +V
Sbjct: 254 GYWNEALEIYYRFRNLG-VVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIV 312

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            + L+ MY K          F+ +                      D   IF++  +R+ 
Sbjct: 313 NNGLLSMYCK----------FNGLI---------------------DGRRIFDKMVLRDA 341

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W  ++ G  Q     ++   F+EM  +     D L ++SI+ AC +   LE GK +H 
Sbjct: 342 VSWNTMICGYSQVGLYEESIKLFMEMVNQFKP--DLLTITSILQACGHLGDLEFGKYVHD 399

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +I  GYE     SN +++MYAKC +++A++++F  M+ KD VSW S+I    Q+G  +E
Sbjct: 400 YMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDE 459

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L+ +M+   VKP+ VT+V L+   + +G +  G++L   + +  G   ++     L+
Sbjct: 460 AMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAK-MGFNSNIVVSNTLV 517

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
           D+ ++ G + ++  + + M    D  TW  ++++C H  +  +G R+ + +
Sbjct: 518 DMYAKCGEMGDSLKVFENMK-ARDIITWNTIIASCVHSEDCNLGLRMISRM 567



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/324 (27%), Positives = 150/324 (46%), Gaps = 38/324 (11%)

Query: 165 SIKLKNSVSWTAMLSA-YARSGRKKDAMEIFEQA-PVRNLFLWTALVSGLVQSRNEIDAF 222
           ++ L +SV ++A L A YA       +  +F  A P  N++ W +++  L  +    +A 
Sbjct: 100 TLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEAL 159

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
             + E +R  +   D     S++ ACA     E+ K IH  V+ +G+ S L+I NA++DM
Sbjct: 160 SLYSETQRIRLQ-PDTYTFPSVINACAGLLDFEMAKSIHDRVLXMGFGSDLYIGNALIDM 218

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           Y + +D+  A+ +F  M  +DVVSW S+I G   +G   E L +Y    + GV P+  T 
Sbjct: 219 YCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTM 278

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL------------------ 384
             ++ AC  +G V +G  +   +IE  GI   +     LL +                  
Sbjct: 279 SSVLRACGGLGSVEEG-DIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMV 337

Query: 385 -------------LSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRV 429
                         S+ G  +E+  L   M   F+PD  T  ++L AC H  + E G  V
Sbjct: 338 LRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYV 397

Query: 430 ANHLLSLKPE-DPSSYILLSNVYA 452
            +++++   E D ++  +L N+YA
Sbjct: 398 HDYMITSGYECDTTASNILINMYA 421



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 5/179 (2%)

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
           + SSI  A A+ A      ++H L+I LG    +  S  ++  YA   D  ++  +F R+
Sbjct: 74  LFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVF-RL 132

Query: 300 R--RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357
                +V  W SII     +G   E L+LY E     ++P+  TF  +I AC+ + L  +
Sbjct: 133 ASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGL-LDFE 191

Query: 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             K     +   G    L     L+D+  R   LD+A  + + MP   D  +W +L+S 
Sbjct: 192 MAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSLISG 249


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/588 (37%), Positives = 322/588 (54%), Gaps = 34/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K++H   I+ G  +   +   L D Y KC  V+ A  + + M Q+  VSW S++  Y Q 
Sbjct: 268 KSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQN 327

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P+K I++F  ML  + + P        + AC  LG    GK VH          D  V
Sbjct: 328 GEPEKAIAVFEKMLE-EGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISV 386

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SL+ MY+KC                                R   A +IF     R  
Sbjct: 387 MNSLISMYSKCK-------------------------------RVDIASDIFNNLNGRTH 415

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W A++ G  Q+    +A   F EM+  G+   D   + S++ A A  +V    K IHG
Sbjct: 416 VSWNAMILGYAQNGRVSEALNCFSEMKSLGMK-PDSFTMVSVIPALAELSVTRHAKWIHG 474

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L+I    +  +F++ A+VDMY+KC  I  A+ +F  +  + V++W ++I G   HG    
Sbjct: 475 LIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRA 534

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L+D+M    V+PN++T++ +I ACSH GLV +G + FKSM +DYG+ PS+ HY  ++
Sbjct: 535 ALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMV 594

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G + EA + I+ MP  P    + A+L ACK H+N E+G + A  L  L P++  
Sbjct: 595 DLLGRAGRIKEAWDFIENMPISPGITVYGAMLGACKIHKNIEVGEKAAKKLFELNPDEGG 654

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            ++LL+N+YAS + W  V++VRK M    +KK PG S +E     H FY+G T+HP    
Sbjct: 655 YHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKR 714

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L EL  E+K  GYVPDT+ +L D+E   +E+ L  HSE+LA+A+GLL + PGT + 
Sbjct: 715 IYAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIH 773

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V KNLRVCGDCH   K IS +T REI+VRD  R+HHFK+G CSC D+W
Sbjct: 774 VRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 211/471 (44%), Gaps = 71/471 (15%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
           + ++ + L+VC  +      K +H Q+I             +++ Y KC  +  A+ + +
Sbjct: 147 VYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFD 206

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
            MP+RD VSW +I+  ++Q    +K + +   M   +  +PD     +++ A   +G   
Sbjct: 207 RMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQD-EGQRPDSITLVTVLPAAADVGLLM 265

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           +GK +H   + + F     + ++L DMY+KCG    AR +FD +  K  VSW +M+  Y 
Sbjct: 266 VGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYV 325

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           ++G  + A+ +FE+                               M  EG+D     ++ 
Sbjct: 326 QNGEPEKAIAVFEK-------------------------------MLEEGIDPTGVTIME 354

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           ++  ACA+   LE GK +H  V  L   S + + N+++ MY+KC  +  A DIF  +  +
Sbjct: 355 AL-HACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGR 413

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
             VSW ++I+G AQ+G+  E L  + EM S G+KP+  T V +I A + +  V +  K  
Sbjct: 414 THVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELS-VTRHAKWI 472

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL------------------------- 397
             +I    +  ++   T L+D+ S+ G +  A  L                         
Sbjct: 473 HGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLG 532

Query: 398 ---------IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
                    +K    EP++ T+ +++SAC H    + G R   H  S+K +
Sbjct: 533 RAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLR---HFKSMKQD 580



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 206/443 (46%), Gaps = 39/443 (8%)

Query: 17  QIALTVKTLHAQI---IKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWA 73
           ++  ++K LH  I   IK GL+        L+  + K   +  A  + E +  +    + 
Sbjct: 57  ELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYH 116

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           ++L  Y + N   +T   F   +  D ++P  + F  L+K CG     + GK++H   + 
Sbjct: 117 TMLKGYAK-NSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLIT 175

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
           + F  +    + +V+MYAKC      R +                          DA ++
Sbjct: 176 NSFAANVFAMTGVVNMYAKC------RQI-------------------------DDAYKM 204

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
           F++ P R+L  W  +++G  Q+     A    + M+ EG    D + L +++ A A+  +
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEG-QRPDSITLVTVLPAAADVGL 263

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L +GK IHG  I  G+   + IS A+ DMY+KC  +  A+ IF  M +K VVSW S++ G
Sbjct: 264 LMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDG 323

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
             Q+G+ E+ +A++++M+  G+ P  VT +  ++AC+ +G + +G+ + K  ++   +  
Sbjct: 324 YVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHK-FVDQLNLGS 382

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
            +     L+ + S+   +D A ++   +       +W A++     +          + +
Sbjct: 383 DISVMNSLISMYSKCKRVDIASDIFNNLNGRT-HVSWNAMILGYAQNGRVSEALNCFSEM 441

Query: 434 LSLKPEDPSSYILLSNVYASAAM 456
            SL  + P S+ ++S + A A +
Sbjct: 442 KSLGMK-PDSFTMVSVIPALAEL 463


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/589 (36%), Positives = 339/589 (57%), Gaps = 34/589 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  ++K        + N L+D Y K D V  A  L  EMP+ D +S+  ++T Y   
Sbjct: 319 QQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWN 378

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++++ +F   L        +F FA+L+          +G+Q+H+  +++    + +V
Sbjct: 379 GRVKESLELFKE-LQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILV 437

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SLVDMYAKCG                                  +A  IF    +++ 
Sbjct: 438 GNSLVDMYAKCG-------------------------------EFGEANRIFSDLAIQSS 466

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WTA++S  VQ     D    F+EM+R  +   D    +SIV ACA+ A L LGKQ+H 
Sbjct: 467 VPWTAMISSYVQKGLHEDGLKLFVEMQRAKIG-ADAATYASIVRACASLASLTLGKQLHS 525

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +I  GY S +F  +A+VDMYAKC  I  A  +F  M  ++ VSW ++I   AQ+G  + 
Sbjct: 526 HIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDC 585

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
           TL L++EMV +G++P+ V+ + ++ ACSH GLV +G + F SM   Y + P  +HY   +
Sbjct: 586 TLRLFEEMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTI 645

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP-EDP 441
           D+L R G  DEAE L+  MPFEPDE  W+++L++C  H+N E+  + AN L ++K   D 
Sbjct: 646 DMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDA 705

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
           + Y+ +SN+YA+A  W +V KV+K M    VKK P YS++E    +H+F A + +HP   
Sbjct: 706 APYVTMSNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWVEIKHKTHVFTANDKTHPQMR 765

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           EI + L EL+ +M ++GY PD+S  LH+++++ K   L +HSER+A+A+ L+ +  G+ +
Sbjct: 766 EIMKKLDELEEKMVKKGYKPDSSCALHNVDEEVKVESLKYHSERIAIAFALISTPEGSPI 825

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            V+KNLR C DCH  +K+IS+I +REI VRD++R+HHF+DG C+C D+W
Sbjct: 826 LVMKNLRACTDCHAAIKVISKIVRREITVRDSSRFHHFRDGFCTCRDYW 874



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 152/311 (48%), Gaps = 8/311 (2%)

Query: 110 SLVKACG-----SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFD 164
           +++K C      +L A +    V A  + + F  +    + LV  + + G  N AR +FD
Sbjct: 66  NIIKPCTRNLVTTLTAPKPHLHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFD 125

Query: 165 SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS 224
            +  KN  S   M+  Y +SG   +A  +F+    R    WT L+ G  Q+    +AF  
Sbjct: 126 EMPHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGL 185

Query: 225 FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284
           FIEM R G+D  D + L++++     F  +   +Q+H  VI LGY+S L +SN+++D Y 
Sbjct: 186 FIEMGRHGID-PDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYC 244

Query: 285 KCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVG 344
           K   +  A  +F  +  +D V++ +++ G ++ G   E + L+ +M   G +P E TF  
Sbjct: 245 KTRSLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAA 304

Query: 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE 404
           ++ A   +  +  G+++   +++      ++     LLD  S+   + EA  L   MP E
Sbjct: 305 ILTAGIQLDDIEFGQQVHGFVVK-CNFVWNVFVANALLDFYSKHDRVVEASKLFYEMP-E 362

Query: 405 PDEPTWAALLS 415
            D  ++  L++
Sbjct: 363 VDGISYNVLVT 373



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/375 (23%), Positives = 167/375 (44%), Gaps = 35/375 (9%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT+I  Y K   +  A  L + M QR  V+W  ++  Y Q N  ++   +F  M     +
Sbjct: 136 NTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEM-GRHGI 194

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            PDH   A+L+       +    +QVH+  +   +    VV +SL+D Y K      A  
Sbjct: 195 DPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQ 254

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F+ I  ++SV++ A+L+ Y++ G  ++A+ +                            
Sbjct: 255 LFNDIPERDSVTFNALLTGYSKEGFNREAINL---------------------------- 286

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F +M+  G    +    ++I+ A      +E G+Q+HG V+   +   +F++NA++D
Sbjct: 287 ---FFKMQEVGYRPTE-FTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLD 342

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
            Y+K   ++ A  +F  M   D +S+  ++   A +G+ +E+L L+ E+   G       
Sbjct: 343 FYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFP 402

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F  L+   +    +  GR++    I    I+  L   + L+D+ ++ G   EA  +   +
Sbjct: 403 FATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNS-LVDMYAKCGEFGEANRIFSDL 461

Query: 402 PFEPDEPTWAALLSA 416
             +   P W A++S+
Sbjct: 462 AIQSSVP-WTAMISS 475



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 7/202 (3%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   +R CA        K LH+ II  G        + L+D Y KC  ++ A  + +EMP
Sbjct: 504 YASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSALVDMYAKCGSIKDALQMFQEMP 563

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            R+ VSW ++++AY Q      T+ +F  M+    LQPD     S++ AC   G    G 
Sbjct: 564 VRNSVSWNALISAYAQNGDGDCTLRLFEEMVR-SGLQPDSVSLLSILCACSHCGLVEEGL 622

Query: 126 QVHACFV-LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYA- 182
           Q       +          +S +DM  + G  + A  +   +  + + + W+++L++   
Sbjct: 623 QYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKLMAQMPFEPDEIMWSSVLNSCGI 682

Query: 183 ---RSGRKKDAMEIFEQAPVRN 201
              +   KK A ++F    +R+
Sbjct: 683 HKNQELAKKAANQLFNMKVLRD 704


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 227/589 (38%), Positives = 334/589 (56%), Gaps = 34/589 (5%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           VK +H   +++GL     + +  +  Y +C  +  A  + +++  R+  +W +++    Q
Sbjct: 354 VKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQ 413

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
               ++ +S+F  M   +   PD   F +++ A     A    K+VH+ + +     D  
Sbjct: 414 QKCGREALSLFLQMRR-EGFFPDATTFVNILSANVGEEALEWVKEVHS-YAIDAGLVDLR 471

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V ++LV MYAKCG               N++        YA+        ++F+    RN
Sbjct: 472 VGNALVHMYAKCG---------------NTM--------YAK--------QVFDDMVERN 500

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           +  WT ++SGL Q     +AF  F++M REG+ + D     SI+ ACA+   LE  K++H
Sbjct: 501 VTTWTVMISGLAQHGCGHEAFSLFLQMLREGI-VPDATTYVSILSACASTGALEWVKEVH 559

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
              +  G  S L + NA+V MYAKC  +  A+ +F  M  +DV SWT +I G AQHG+  
Sbjct: 560 SHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGL 619

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           + L L+ +M   G KPN  +FV ++ ACSH GLV +GR+ F S+ +DYGI P+++HYTC+
Sbjct: 620 DALDLFVKMKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCM 679

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL R+G L+EA++ I  MP EP +  W ALL AC  + N EM    A   L LKP+  
Sbjct: 680 VDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSA 739

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
           S+Y+LLSN+YA+   W+    VR +M    ++KEPG S+IE     H F  G+TSHP   
Sbjct: 740 STYVLLSNIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWIEVDNQIHSFVVGDTSHPESK 799

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           EI+  L +L   +K  GYVPDT  VL + +Q+ KE+ L  HSE+LA+ YGL+ +     +
Sbjct: 800 EIYAKLKDLIKRLKAEGYVPDTRLVLRNTDQEYKEQALCSHSEKLAIVYGLMHTPYRNPI 859

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           RV KNLRVC DCH   K IS++T REIV RDA R+HHFKDG CSC D+W
Sbjct: 860 RVYKNLRVCSDCHTATKFISKVTGREIVARDAKRFHHFKDGVCSCGDYW 908



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 136/547 (24%), Positives = 239/547 (43%), Gaps = 75/547 (13%)

Query: 75  ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134
           ++  Y +    +  + ++S M   +  QP+   + S++KAC S  + + GK++HA  + S
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRR-EGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQS 59

Query: 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
            F  D  V+++LV+MY KCG  ++A+ +FD +  +N +SWT M+   A  GR +      
Sbjct: 60  GFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQ------ 113

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
                                    +AF+ F++M+REG  I +     SI+ A A+   L
Sbjct: 114 -------------------------EAFHRFLQMQREGF-IPNSYTYVSILNANASAGAL 147

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
           E  K++H   +  G    L + NA+V MYAK   I  A+ +F  M  +D+ SWT +I G 
Sbjct: 148 EWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGL 207

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC--SHVGLVGKGRKLFKSMIEDYGIT 372
           AQHG+ +E  +L+ +M   G  PN  T++ ++ A   +  G +   +++ K   +  G  
Sbjct: 208 AQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKA-GFI 266

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
             L+    L+ + ++ G +D+A  +   M  + D  +W A++     +     G      
Sbjct: 267 SDLRVGNALIHMYAKCGSIDDARLVFDGMC-DRDVISWNAMIGGLAQN---GCGHEAFTI 322

Query: 433 LLSLKPE----DPSSYILLSNVYASAAMWQHVSKVRK------LMSVMEVKKEPGYSYIE 482
            L ++ E    D ++Y+ L N + S   W+ V +V K      L+S + V     + YI 
Sbjct: 323 FLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIR 382

Query: 483 FGK---GSHIF--------------YAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSS 525
            G       IF                G        E   L      +M+R G+ PD ++
Sbjct: 383 CGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFL----QMRREGFFPDATT 438

Query: 526 VLHDMEQKEKERQLFWHSE--RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRI 583
            ++ +     E  L W  E    A+  GL+    G  L  V     CG+     ++   +
Sbjct: 439 FVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNAL--VHMYAKCGNTMYAKQVFDDM 496

Query: 584 TKREIVV 590
            +R +  
Sbjct: 497 VERNVTT 503



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 110/399 (27%), Positives = 179/399 (44%), Gaps = 36/399 (9%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           VK +H    K G      + N LI  Y KC  +  A  + + M  RD +SW +++    Q
Sbjct: 253 VKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQ 312

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
                +  +IF  M   +   PD   + SL+    S GA    K+VH   V      D  
Sbjct: 313 NGCGHEAFTIFLKM-QQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLR 371

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V S+ V MY +CG  ++A+ +FD + ++N  +W AM                        
Sbjct: 372 VGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAM------------------------ 407

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                  + G+ Q +   +A   F++MRREG    D     +I+ A      LE  K++H
Sbjct: 408 -------IGGVAQQKCGREALSLFLQMRREGF-FPDATTFVNILSANVGEEALEWVKEVH 459

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
              I  G    L + NA+V MYAKC + + AK +F  M  ++V +WT +I G AQHG   
Sbjct: 460 SYAIDAGLVD-LRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGH 518

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E  +L+ +M+  G+ P+  T+V ++ AC+  G + +  K   S   + G+   L+    L
Sbjct: 519 EAFSLFLQMLREGIVPDATTYVSILSACASTGAL-EWVKEVHSHAVNAGLVSDLRVGNAL 577

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           + + ++ G +D+A  +   M  E D  +W  ++     H
Sbjct: 578 VHMYAKCGSVDDARRVFDDM-LERDVYSWTVMIGGLAQH 615



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 136/567 (23%), Positives = 236/567 (41%), Gaps = 70/567 (12%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           YL  L+ C         K +HA II+ G      +   L++ Y KC  +  A  + ++M 
Sbjct: 33  YLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMV 92

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +R+ +SW  ++         Q+    F  M   +   P+ + + S++ A  S GA    K
Sbjct: 93  ERNVISWTVMIGGLAHYGRGQEAFHRFLQM-QREGFIPNSYTYVSILNANASAGALEWVK 151

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           +VH+  V +    D  V ++LV MYAK G  ++AR VFD +  ++  SWT M+   A+ G
Sbjct: 152 EVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHG 211

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
           R +                               +AF  F++M R G  + +     SI+
Sbjct: 212 RGQ-------------------------------EAFSLFLQMERGGC-LPNLTTYLSIL 239

Query: 246 GACA--NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
            A A  +   LE  K++H      G+ S L + NA++ MYAKC  I  A+ +F  M  +D
Sbjct: 240 NASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCGSIDDARLVFDGMCDRD 299

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           V+SW ++I G AQ+G   E   ++ +M   G  P+  T++ L+      G     +++ K
Sbjct: 300 VISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHK 359

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
             +E  G+   L+  +  + +  R G +D+A+ +   +    +  TW A++      +  
Sbjct: 360 HAVE-VGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVR-NVTTWNAMIGGVAQQK-- 415

Query: 424 EMGTRVANHLLSLKPE----DPSSY--ILLSNVYASAAMW---QHVSKVRKLMSVMEVKK 474
             G    +  L ++ E    D +++  IL +NV   A  W    H   +   +  + V  
Sbjct: 416 -CGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGN 474

Query: 475 EPGYSYIEFGKGSH-----------------IFYAGETSHPLKDEIFELLTELDAEMKRR 517
              + Y + G   +                 +  +G   H    E F L      +M R 
Sbjct: 475 ALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFL----QMLRE 530

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSE 544
           G VPD ++ +  +        L W  E
Sbjct: 531 GIVPDATTYVSILSACASTGALEWVKE 557



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 192/448 (42%), Gaps = 67/448 (14%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           VK +H+  +  GL     + N L+  Y K   +  A  + + M +RD  SW  ++    Q
Sbjct: 150 VKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQ 209

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG--SLGATRLGKQVHACFVLSPFCDD 139
               Q+  S+F  M     L P+   + S++ A    S GA    K+VH     + F  D
Sbjct: 210 HGRGQEAFSLFLQMERGGCL-PNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISD 268

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             V ++L+ MYAKCG  ++AR VFD +  ++ +SW AM+   A++G   +A  I      
Sbjct: 269 LRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTI------ 322

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                    F++M++EG  + D     S++    +    E  K+
Sbjct: 323 -------------------------FLKMQQEGF-VPDSTTYLSLLNTHVSTGAWEWVKE 356

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           +H   + +G  S L + +A V MY +C  I  A+ IF ++  ++V +W ++I G AQ   
Sbjct: 357 VHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKC 416

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYA----------------CSHVGLVGK------ 357
             E L+L+ +M   G  P+  TFV ++ A                    GLV        
Sbjct: 417 GREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYAIDAGLVDLRVGNAL 476

Query: 358 -------GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE---PDE 407
                  G  ++   + D  +  ++  +T ++  L++ G   EA +L   M  E   PD 
Sbjct: 477 VHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDA 536

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLS 435
            T+ ++LSAC      E    V +H ++
Sbjct: 537 TTYVSILSACASTGALEWVKEVHSHAVN 564



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 77/180 (42%), Gaps = 9/180 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  L  CA       VK +H+  +  GL     + N L+  Y KC  V  A  + ++M 
Sbjct: 539 YVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHMYAKCGSVDDARRVFDDML 598

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +RD  SW  ++    Q       + +F  M  L+  +P+ + F +++ AC   G    G+
Sbjct: 599 ERDVYSWTVMIGGLAQHGRGLDALDLFVKM-KLEGFKPNGYSFVAVLSACSHAGLVDEGR 657

Query: 126 Q----VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
           +    +   + + P  +     + +VD+  + G    A+    ++ ++     W A+L A
Sbjct: 658 RQFLSLTQDYGIEPTMEH---YTCMVDLLGRAGQLEEAKHFILNMPIEPGDAPWGALLGA 714


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 229/603 (37%), Positives = 333/603 (55%), Gaps = 35/603 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L +C +    ++   +H   IKLGL     + N LI+ Y K   ++ A  +  +M  RD 
Sbjct: 247 LPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDI 306

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S+L A+ Q   P   + +++ M ++  + PD     SL      LG     + +H 
Sbjct: 307 VSWNSLLAAFEQNKKPVIALGVYNKMHSIG-VVPDLLTLVSLASVAAELGNFLSSRSIHG 365

Query: 130 CFVLSP--FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
            FV     F  D  + ++++DMYAK G  ++AR                           
Sbjct: 366 -FVTRRCWFLHDIALGNAIIDMYAKLGFIDSAR--------------------------- 397

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
               ++FE  PV+++  W +L++G  Q+    +A   +  MR     + +     SI+ A
Sbjct: 398 ----KVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTA 453

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
            +    L+ G + HG +I       +F+S  +VDMY KC  +  A  +F  +  +  VSW
Sbjct: 454 HSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSW 513

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            +II     HG   + + L+ EM S GVKP+ +TFV L+ ACSH GLV +G+  F+ M E
Sbjct: 514 NAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQLMQE 573

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
            YGI PSL+HY C++DL  R+GHL++A N +K MP  PD   W ALL AC+ H N E+  
Sbjct: 574 TYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENVELVR 633

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
            V++HLL ++ E+   Y+LLSN+YA    W+ V +VR L     +KK PG+S IE  K  
Sbjct: 634 TVSDHLLKVESENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWSSIEVDKKI 693

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
            +FY G  +HP  +EI+  L  L A+MK  GYVPD + VL D+E  EKE  L  HSERLA
Sbjct: 694 DVFYTGNQTHPKCEEIYSELRNLTAKMKSIGYVPDYNFVLQDVEDDEKENILTSHSERLA 753

Query: 548 VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
           +A+G++ + P T L++ KNLRVCGDCH   K IS+IT+REI+VRD+ R+HHFKDG CSC 
Sbjct: 754 MAFGIISTPPKTTLQIFKNLRVCGDCHNATKFISKITEREIIVRDSNRFHHFKDGVCSCG 813

Query: 608 DFW 610
           D+W
Sbjct: 814 DYW 816



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 195/395 (49%), Gaps = 38/395 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LHA ++  G  Q   L   LI+ Y     + +A    +++  +D  +W S+++AY + 
Sbjct: 60  KQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARI 119

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV- 141
                 +  F+  L+   LQ DH+ F  +++ACG+L     G++VH C VL    + DV 
Sbjct: 120 GHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGNLDD---GRKVH-CLVLKLGFECDVY 175

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           + +S +  Y++ G  + A  +FD++ +++  +W AM+S +  +G+  +A+E+F+      
Sbjct: 176 IAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFD------ 229

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                                    EMR + V + D + +SS++  C     +  G  IH
Sbjct: 230 -------------------------EMRFKSVSM-DSVTISSLLPICVQLDDIISGVLIH 263

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
              I LG E  LF+ NA+++MYAK  ++ +A+ IF +M+ +D+VSW S++    Q+ +  
Sbjct: 264 VYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPV 323

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
             L +Y++M S GV P+ +T V L    + +G     R +   +         +     +
Sbjct: 324 IALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAI 383

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +D+ ++ G +D A  + + +P + D  +W +L++ 
Sbjct: 384 IDMYAKLGFIDSARKVFEGLPVK-DVISWNSLITG 417



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 148/318 (46%), Gaps = 44/318 (13%)

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           L KQ+HA  V+S       + + L++ YA  G   +AR  FD I+ K+  +W +M+SAYA
Sbjct: 58  LAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYA 117

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           R G    A++ F      N FL T+ +                           D     
Sbjct: 118 RIGHFHAAVDCF------NEFLSTSFLQS-------------------------DHYTFP 146

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            ++ AC N   L+ G+++H LV+ LG+E  ++I+ + +  Y++   +  A ++F  M  +
Sbjct: 147 PVIRACGN---LDDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIR 203

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           D+ +W ++I G   +G+  E L ++DEM    V  + VT   L+  C  +  +  G    
Sbjct: 204 DIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISG---- 259

Query: 363 KSMIEDYGITPSLQH--YTC--LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
             +I  Y I   L+   + C  L+++ ++ G L  AE +   M    D  +W +LL+A +
Sbjct: 260 -VLIHVYAIKLGLEFDLFVCNALINMYAKFGELRSAETIFNQMKVR-DIVSWNSLLAAFE 317

Query: 419 HHRNTEMGTRVANHLLSL 436
            ++   +   V N + S+
Sbjct: 318 QNKKPVIALGVYNKMHSI 335



 Score = 65.5 bits (158), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/164 (28%), Positives = 79/164 (48%), Gaps = 6/164 (3%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           + L KQ+H L++  G    +F+S  +++ YA   DI  A+  F +++ KDV +W S+I  
Sbjct: 56  VHLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISA 115

Query: 314 TAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
            A+ G     +  ++E +S   ++ +  TF  +I AC   G +  GRK+   ++   G  
Sbjct: 116 YARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRAC---GNLDDGRKV-HCLVLKLGFE 171

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             +      +   SR G +  A NL   M    D  TW A++S 
Sbjct: 172 CDVYIAASFIHFYSRFGFVSLACNLFDNMMIR-DIGTWNAMISG 214


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/607 (37%), Positives = 337/607 (55%), Gaps = 36/607 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE--E 63
           + H L+ C+        + +HAQ+ +LG      + N LI  Y KC  +  A  + E   
Sbjct: 122 FPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLP 181

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           +P+R  VSW +I++AY Q   P + + IFS M  +D ++PD     S++ A   L   + 
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD-VKPDWVALVSVLNAFTCLQDLKQ 240

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G+ +HA  V      +  +  SL  MYAKCG    A+ +FD +K                
Sbjct: 241 GRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMK---------------- 284

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
                        +P  NL LW A++SG  ++    +A   F EM  + V   D + ++S
Sbjct: 285 -------------SP--NLILWNAMISGYAKNGYAREAIDMFHEMINKDVR-PDTISITS 328

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
            + ACA    LE  + ++  V    Y   +FIS+A++DM+AKC  +  A+ +F R   +D
Sbjct: 329 AISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRD 388

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           VV W+++IVG   HG+A E ++LY  M   GV PN+VTF+GL+ AC+H G+V +G   F 
Sbjct: 389 VVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFN 448

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
            M  D+ I P  QHY C++DLL R+GHLD+A  +IK MP +P    W ALLSACK HR+ 
Sbjct: 449 RM-ADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHV 507

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           E+G   A  L S+ P +   Y+ LSN+YA+A +W  V++VR  M    + K+ G S++E 
Sbjct: 508 ELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEV 567

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
                 F  G+ SHP  +EI   +  +++ +K  G+V +  + LHD+  +E E  L  HS
Sbjct: 568 RGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHS 627

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           ER+A+AYGL+ +  GT LR+ KNLR C +CH   K+IS++  REIVVRD  R+HHFKDG 
Sbjct: 628 ERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGV 687

Query: 604 CSCNDFW 610
           CSC D+W
Sbjct: 688 CSCGDYW 694



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 75/160 (46%), Gaps = 2/160 (1%)

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           KQIH  ++ LG +   F+   ++   +   DI  A+ +F  + R  +  W +II G +++
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
              ++ L +Y  M  A V P+  TF  L+ ACS +  +  GR    + +   G    +  
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR-FVHAQVFRLGFDADVFV 156

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPF-EPDEPTWAALLSA 416
              L+ L ++   L  A  + + +P  E    +W A++SA
Sbjct: 157 QNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSA 196


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 225/605 (37%), Positives = 355/605 (58%), Gaps = 43/605 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L++C++ +     K LH  ++K G      +   L+  Y KC  V  A  L   M    H
Sbjct: 313 LKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFS-MADAAH 371

Query: 70  --VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
             V+W +++  + Q N  +K + +F  M + + ++P+HF +++++        + L  Q+
Sbjct: 372 NVVTWTAMIGGFVQNNNNKKAVDLFCQM-SREGVRPNHFTYSTVLAG----KPSSLLSQL 426

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           HA           ++K+     Y K  +P+ A               TA+L AY ++G  
Sbjct: 427 HA----------QIIKA----YYEK--VPSVA---------------TALLDAYVKTGNV 455

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
            ++  +F   P +++  W+A+++GL Q+R+   A   FI++ +EGV   +    SS++ A
Sbjct: 456 VESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVK-PNEYTFSSVINA 514

Query: 248 CAN-FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           C++  A +E GKQIH   +  G  + L +S+A++ MY+K  +I +A+ +F R   +D+VS
Sbjct: 515 CSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVS 574

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W S+I G  QHG A++ L ++  M + G+  ++VTF+G++ AC+H GLV +G K F  MI
Sbjct: 575 WNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMI 634

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT-WAALLSACKHHRNTEM 425
           +DY I    +HY+C++DL SR+G  D+A ++I  MPF P  PT W  LL+AC+ HRN E+
Sbjct: 635 KDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPF-PASPTIWRTLLAACRVHRNLEL 693

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G   A  L+SL+P D   Y+LLSN++A A  W+  + VRKLM   +VKKE G S+IE   
Sbjct: 694 GKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDERKVKKEAGCSWIEIKN 753

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
               F AG+ SHP  D ++  L EL  ++K  GY PDT+ V HD+E++ KE  L  HSER
Sbjct: 754 RIFSFLAGDVSHPFSDLVYAKLEELSIKLKDMGYQPDTNYVFHDVEEEHKEAILSQHSER 813

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+AYGL+   PG  +++ KNLR+CGDCH V+++IS I +R ++VRD+ R+HHFK G CS
Sbjct: 814 LAIAYGLIALPPGAPIQIEKNLRICGDCHNVIELISLIEERTLIVRDSNRFHHFKGGVCS 873

Query: 606 CNDFW 610
           C  +W
Sbjct: 874 CGGYW 878



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 118/462 (25%), Positives = 210/462 (45%), Gaps = 52/462 (11%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+VC      +  + +H Q +K G  +   +  +L+D Y K +  +    + +EM  ++ 
Sbjct: 111 LKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNV 170

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S+L+ Y +  L  + I + + M  ++ + P+ F FA+++ A         G QVHA
Sbjct: 171 VSWTSLLSGYARNGLNDEVIHLINQM-QMEGVNPNGFTFATVLGALADESIIEGGVQVHA 229

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V + F     V ++L+ MY K  +  +A AVFDS+ +++SV+W  M+  YA  G    
Sbjct: 230 MIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFY-- 287

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
                                        ++ F  F  MR  GV +    V  + +  C+
Sbjct: 288 -----------------------------LEGFQMFHRMRLAGVKL-SRTVFCTALKLCS 317

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-DVVSWT 308
               L   KQ+H  V+  GYE    I  A++  Y+KCS +  A  +F       +VV+WT
Sbjct: 318 QQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWT 377

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++I G  Q+   ++ + L+ +M   GV+PN  T+  +        L GK   L   +   
Sbjct: 378 AMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTV--------LAGKPSSLLSQLHAQ 429

Query: 369 -----YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
                Y   PS+   T LLD   ++G++ E+  +  ++P   D   W+A+L+     R++
Sbjct: 430 IIKAYYEKVPSVA--TALLDAYVKTGNVVESARVFYSIP-AKDIVAWSAMLTGLAQTRDS 486

Query: 424 EMGTRVANHLL--SLKPEDPSSYILLSNVYASAAMWQHVSKV 463
           E    V   L+   +KP + +   +++   +SAA  +H  ++
Sbjct: 487 EKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQI 528



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/407 (24%), Positives = 185/407 (45%), Gaps = 41/407 (10%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA I+K G      + N LI  Y K ++V  A  + + M  RD V+W  ++  Y     
Sbjct: 227 VHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGF 286

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
             +   +F  M  L  ++    VF + +K C         KQ+H                
Sbjct: 287 YLEGFQMFHRM-RLAGVKLSRTVFCTALKLCSQQRELNFTKQLH---------------- 329

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA-PVRNLF 203
                   CG+  N       I+       TA++  Y++     +A ++F  A    N+ 
Sbjct: 330 --------CGVVKNGYEFAQDIR-------TALMVTYSKCSSVDEAFKLFSMADAAHNVV 374

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            WTA++ G VQ+ N   A   F +M REGV   +    S+++    +     L  Q+H  
Sbjct: 375 TWTAMIGGFVQNNNNKKAVDLFCQMSREGVR-PNHFTYSTVLAGKPS----SLLSQLHAQ 429

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           +I   YE    ++ A++D Y K  +++ +  +F  +  KD+V+W++++ G AQ   +E+ 
Sbjct: 430 IIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKA 489

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYAC-SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
           + ++ ++V  GVKPNE TF  +I AC S    V  G+++  + ++  G + +L   + LL
Sbjct: 490 MEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKS-GKSNALCVSSALL 548

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            + S+ G+++ AE +      E D  +W ++++    H + +    V
Sbjct: 549 TMYSKKGNIESAEKVFTRQE-ERDIVSWNSMITGYGQHGDAKKALEV 594



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 180/395 (45%), Gaps = 34/395 (8%)

Query: 30  IKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTI 89
           IK  LH +G L +  +         +YAH L +E P +D   +  +L  +++ N  ++ +
Sbjct: 30  IKHFLHPHGFLYHQSLPFISLPSRPRYAHQLFDETPLKDISHYNRLLFDFSRNNHDREAL 89

Query: 90  SIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM 149
            +F  + +   L  D    +  +K CG L    +G+QVH   + S F +D  V +SLVDM
Sbjct: 90  HLFKDLHS-SGLGVDGLTLSCALKVCGVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDM 148

Query: 150 YAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALV 209
           Y K                               +   +D   IF++  ++N+  WT+L+
Sbjct: 149 YMK-------------------------------TEDFEDGRGIFDEMGIKNVVSWTSLL 177

Query: 210 SGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY 269
           SG  ++    +  +   +M+ EGV+  +    ++++GA A+ +++E G Q+H +++  G+
Sbjct: 178 SGYARNGLNDEVIHLINQMQMEGVN-PNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDE 329
           E   F+ NA++ MY K   +  A+ +F  M  +D V+W  +I G A  G   E   ++  
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389
           M  AGVK +   F   +  CS    +   ++L   ++++ G   +    T L+   S+  
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKN-GYEFAQDIRTALMVTYSKCS 355

Query: 390 HLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
            +DEA  L        +  TW A++     + N +
Sbjct: 356 SVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNK 390


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  422 bits (1084), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/608 (35%), Positives = 346/608 (56%), Gaps = 19/608 (3%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL--VQYAHHLLEEMPQRDHVSWASILTAY 79
           +K +HA ++K G      +   ++      D   + YA  + +++P+R+  +W +++ A 
Sbjct: 31  LKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIRAL 90

Query: 80  NQA-NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
            +  +     + +F  ML+   ++P+ F F S++KAC  +     GKQVH   +     D
Sbjct: 91  AETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQVHGLLLKFGLVD 150

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVF-------DSIKLK---------NSVSWTAMLSAYA 182
           D+ V ++L+ MY  CG   +A  +F       D ++           N V    M+  YA
Sbjct: 151 DEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYA 210

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           R G  K A E+F++   R++  W  ++SG  Q+    +A   F  M + G  + + + L 
Sbjct: 211 RVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLV 270

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           S++ A +   VLELGK +H             + +A+VDMYAKC  I  A  +F R+ + 
Sbjct: 271 SVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERLPQN 330

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           +V++W ++I G A HG+A +       M   G+ P++VT++ ++ ACSH GLV +GR  F
Sbjct: 331 NVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGRSFF 390

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
             M+   G+ P ++HY C++DLL R+G+L+EAE LI  MP +PD+  W ALL A K H+N
Sbjct: 391 NDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKN 450

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
            ++G R A  L+ + P D  +Y+ LSN+YAS+  W  V+ VR +M  M+++K+PG S+IE
Sbjct: 451 IKIGMRAAEVLMQMAPHDSGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGCSWIE 510

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWH 542
                H F   + SH    +I  +L E+  ++   G++PDT+ VL  M++K KE  L +H
Sbjct: 511 IDGVIHEFLVEDDSHSRAKDIHSMLEEISNKLSLEGHMPDTTQVLLKMDEKHKESVLHYH 570

Query: 543 SERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           SE++AVA+GL+ + P T L +VKNLR+C DCH  MK+IS++ +R+IV+RD  R+HHF+ G
Sbjct: 571 SEKIAVAFGLISTPPKTPLCIVKNLRICEDCHSSMKLISKMYERKIVIRDRKRFHHFEHG 630

Query: 603 KCSCNDFW 610
            CSC D+W
Sbjct: 631 SCSCMDYW 638


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/605 (36%), Positives = 347/605 (57%), Gaps = 35/605 (5%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L+ +    R    L    +HA  IK G+     + N+LID YGKC  V+Y     E MP+
Sbjct: 356 LNMIAASGRSANLLAGMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPE 415

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           +D +SW +I+  Y Q       +++    + L+K+  D  +  S++ AC  L + +L K+
Sbjct: 416 KDLISWTTIIAGYAQNECHLDALNLLRK-VQLEKMDVDPMMIGSILLACSGLKSEKLIKE 474

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +H  +VL     D ++++++V++Y +  L + AR VF+SI  K+ VSWT+M++    +G 
Sbjct: 475 IHG-YVLKGGLADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGL 533

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
             +A+E+F                             S IE   E     D + L S++ 
Sbjct: 534 AIEALELFN----------------------------SLIETNIEP----DLITLVSVLY 561

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           A A  + L+ GK+IHG +I  G+     I+N++VDMYA+C  +  A++IF  ++++D++ 
Sbjct: 562 AAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENARNIFNYVKQRDLIL 621

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           WTS+I     HG  ++ + L+ +M    V P+ +TF+ L+YACSH GLV +G++ F+ M 
Sbjct: 622 WTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYACSHSGLVVEGKQHFEIMK 681

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
            +Y + P  +HY CL+DLL+RS  L+EA + ++ MP EP    W ALL AC+ H N ++G
Sbjct: 682 NEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEVWCALLGACRIHSNNDLG 741

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
              A  LL L  E+  +Y+L+SN +A+   W  V +VR +M   ++KK+PG S+IE    
Sbjct: 742 EVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEEVRSIMKGNKLKKKPGCSWIEVENK 801

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRR-GYVPDTSSVLHDMEQKEKERQLFWHSER 545
            H F A + SHP  + I+  L +    +K + GY   T  V HD+ ++EK + L+ HSER
Sbjct: 802 IHTFMARDKSHPQCNNIYLKLAQFTKLLKEKGGYRAQTKLVFHDVCEEEKTQMLYGHSER 861

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+ YGLL +  GT LR+ KNLR+C DCH   K+ S I++R +VVRDA+R+HHF+ G CS
Sbjct: 862 LALGYGLLVTSKGTCLRITKNLRICDDCHAFFKIASEISQRTLVVRDASRFHHFERGLCS 921

Query: 606 CNDFW 610
           C DFW
Sbjct: 922 CGDFW 926



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 196/415 (47%), Gaps = 36/415 (8%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L+ C         + +HA I+K        + N LI  Y  C  ++ A  + + M 
Sbjct: 254 FVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSML 313

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            +D VSW ++L+   Q ++    I+ F  M    + +PD     +++ A G       G 
Sbjct: 314 FKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQ-KPDQVSVLNMIAASGRSANLLAGM 372

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           +VHA  +      +  + +SL+DMY KC       + F+ +  K+ +SWT +++ YA   
Sbjct: 373 EVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYA--- 429

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
                                       Q+   +DA     +++ E +D VDP+++ SI+
Sbjct: 430 ----------------------------QNECHLDALNLLRKVQLEKMD-VDPMMIGSIL 460

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            AC+     +L K+IHG V+  G    L I NAIV++Y + + +  A+ +F  +  KD+V
Sbjct: 461 LACSGLKSEKLIKEIHGYVLKGGLADIL-IQNAIVNVYGELALVDYARHVFESINSKDIV 519

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SWTS+I     +G A E L L++ ++   ++P+ +T V ++YA + +  + KG+++   +
Sbjct: 520 SWTSMITCCVHNGLAIEALELFNSLIETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFL 579

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           I        L   + L+D+ +R G ++ A N+   +  + D   W ++++A   H
Sbjct: 580 IRKGFFLEGLIANS-LVDMYARCGTMENARNIFNYVK-QRDLILWTSMINANGMH 632



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 177/392 (45%), Gaps = 49/392 (12%)

Query: 86  QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP-FCDDDVVKS 144
           Q     F+  L      P    ++  ++ C S  A   G+Q+HA F+ +  + D   + +
Sbjct: 27  QSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDT 86

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
             V MY KCG   +A  VFD +  +   +W AM+ A   +GR  +A+E+++         
Sbjct: 87  KFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYK--------- 137

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                                 EMR  GV + D      ++ AC  F    LG +IHG+ 
Sbjct: 138 ----------------------EMRVLGVSL-DAFTFPCVLKACGAFKERRLGCEIHGVA 174

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIF--GRMRRKDVVSWTSIIVGTAQHGQAEE 322
           +  GY   +F+ NA++ MYAKC D+  A+ +F  G M + D VSW SII      G++ E
Sbjct: 175 VKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLE 234

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L+L+  M   GV+ N  TFV  + AC     +  GR +   +++    T  +     L+
Sbjct: 235 ALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFT-DVYVSNALI 293

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP--ED 440
            + +  G +++AE + K+M F+ D  +W  LLS    +   +M +   NH   ++   + 
Sbjct: 294 AMYANCGQMEDAERVFKSMLFK-DCVSWNTLLSGMVQN---DMYSDAINHFQDMQDSGQK 349

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
           P    +L+ + AS        +   L++ MEV
Sbjct: 350 PDQVSVLNMIAASG-------RSANLLAGMEV 374



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 192/414 (46%), Gaps = 38/414 (9%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNT-LIDAYGKCDLVQYAHHLLEEM 64
           Y   L +CA H+     + LHA  +K   +      +T  +  YGKC     A  + ++M
Sbjct: 49  YSQALELCASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKM 108

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
            +R   +W +++ A   A    + I ++  M  L  +  D F F  ++KACG+    RLG
Sbjct: 109 SERTIFTWNAMIGACVSAGRYVEAIELYKEMRVLG-VSLDAFTFPCVLKACGAFKERRLG 167

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDS--IKLKNSVSWTAMLSAYA 182
            ++H   V   +     V ++L+ MYAKCG    AR +FDS  ++  + VSW +++SA+ 
Sbjct: 168 CEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHV 227

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
             G   +A+ +F +                               M+  GV+  +     
Sbjct: 228 GEGESLEALSLFRR-------------------------------MQEVGVE-SNTYTFV 255

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           S + AC     +++G+ IH +++   + + +++SNA++ MYA C  +  A+ +F  M  K
Sbjct: 256 SALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQMEDAERVFKSMLFK 315

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           D VSW +++ G  Q+    + +  + +M  +G KP++V+ + +I A      +  G ++ 
Sbjct: 316 DCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVH 375

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
              I+ +GI  ++     L+D+  +   +    +  + MP E D  +W  +++ 
Sbjct: 376 AYAIK-HGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMP-EKDLISWTTIIAG 427



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 197/442 (44%), Gaps = 55/442 (12%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE--MPQRDHVSWASILTAYNQA 82
           +H   +K G   +  + N LI  Y KC  +  A  L +   M + D VSW SI++A+   
Sbjct: 170 IHGVAVKCGYGGFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGE 229

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + +S+F  M  +  ++ + + F S ++AC      ++G+ +HA  + S    D  V
Sbjct: 230 GESLEALSLFRRMQEVG-VESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYV 288

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+ MYA C                               G+ +DA  +F+    ++ 
Sbjct: 289 SNALIAMYANC-------------------------------GQMEDAERVFKSMLFKDC 317

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W  L+SG+VQ+    DA   F +M+  G    D + + +++ A    A L  G ++H 
Sbjct: 318 VSWNTLLSGMVQNDMYSDAINHFQDMQDSGQK-PDQVSVLNMIAASGRSANLLAGMEVHA 376

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             I  G +S + I N+++DMY KC  +      F  M  KD++SWT+II G AQ+    +
Sbjct: 377 YAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLD 436

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM--------IEDYGITPS 374
            L L  ++    +  + +    ++ ACS  GL  K  KL K +        + D  I  +
Sbjct: 437 ALNLLRKVQLEKMDVDPMMIGSILLACS--GL--KSEKLIKEIHGYVLKGGLADILIQNA 492

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           + +    L L+  + H+ E+ N         D  +W ++++ C H+        + N L+
Sbjct: 493 IVNVYGELALVDYARHVFESIN-------SKDIVSWTSMITCCVHNGLAIEALELFNSLI 545

Query: 435 SLKPEDPSSYILLSNVYASAAM 456
               E P    L+S +YA+AA+
Sbjct: 546 ETNIE-PDLITLVSVLYAAAAL 566


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 235/676 (34%), Positives = 369/676 (54%), Gaps = 73/676 (10%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L  C  H++   +  +  QIIKLG      + NTL+D+Y K + +  A  L +EMP
Sbjct: 152 FVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMP 211

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           + D VS+ +++T Y++  L +K +++F  M     L+P  F FA+++ A   L    LG+
Sbjct: 212 EIDSVSYNAMITGYSKDGLDEKAVNLFVEMQN-SGLKPTEFTFAAVLCANIGLDDIVLGQ 270

Query: 126 QVHA----------CFVLSPFCD---------------------DDVVKSSLVDMYAKCG 154
           Q+H+           FV +   D                     D V  + ++  YA  G
Sbjct: 271 QIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDG 330

Query: 155 LPNNARAVFDSIKL-----------------KNSVSW----------------------T 175
               A  +F  ++                   N++ W                       
Sbjct: 331 KHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGN 390

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
           +++  YA+ G+ ++A  IF     R+   WTA++S  VQ     +    F +MR+  V I
Sbjct: 391 SLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASV-I 449

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
            D    +S++ A A+ A L LGKQ+H  +I  G+ S +F  +A++D+YAKC  I  A   
Sbjct: 450 ADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQT 509

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
           F  M  +++VSW ++I   AQ+G+AE TL  + EMV +G++P+ V+F+G++ ACSH GLV
Sbjct: 510 FQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLV 569

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
            +G   F SM + Y + P  +HY  ++D+L RSG  +EAE L+  MP +PDE  W+++L+
Sbjct: 570 EEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLN 629

Query: 416 ACKHHRNTEMGTRVANHLLSLKP-EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKK 474
           AC+ H+N E+  R A+ L +++   D + Y+ +SN+YA+A  W++VSKV K M    VKK
Sbjct: 630 ACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKK 689

Query: 475 EPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE 534
            P YS++E    +H+F A +  HP  +EI + +  L   M+  GY PDTS  LH+ ++K 
Sbjct: 690 LPAYSWVEIKHETHMFSANDRCHPQIEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKF 749

Query: 535 KERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDAT 594
           K   L +HSERLA+A+ L+ +  G+ + V+KNLR C DCH  +K+IS+I  REI VRD+T
Sbjct: 750 KVESLKYHSERLAIAFALISTPEGSPILVMKNLRACIDCHAAIKVISKIVGREITVRDST 809

Query: 595 RYHHFKDGKCSCNDFW 610
           R+HHF+DG CSC DFW
Sbjct: 810 RFHHFRDGFCSCGDFW 825



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 145/282 (51%), Gaps = 8/282 (2%)

Query: 138 DDDVVKSSL-VDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           D D  +S+  V  + K G  + AR +F+ +  KN+VS   M+S Y +SG   +A ++F+ 
Sbjct: 49  DPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDG 108

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
              R    WT L+ G  Q     +AF  F++M+R G +  D +   +++  C    +   
Sbjct: 109 MVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE-PDYVTFVTLLSGCNGHEMGNQ 167

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
             Q+   +I LGY+S L + N +VD Y K + +  A  +F  M   D VS+ ++I G ++
Sbjct: 168 ITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSK 227

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL--VGKGRKLFKSMIEDYGITPS 374
            G  E+ + L+ EM ++G+KP E TF  ++  C+++GL  +  G+++   +I+      +
Sbjct: 228 DGLDEKAVNLFVEMQNSGLKPTEFTFAAVL--CANIGLDDIVLGQQIHSFVIKT-NFVWN 284

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +     LLD  S+   + +A  L   MP E D  ++  ++S 
Sbjct: 285 VFVSNALLDFYSKHDSVIDARKLFDEMP-EQDGVSYNVIISG 325



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 172/408 (42%), Gaps = 39/408 (9%)

Query: 28  QIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQK 87
           Q+ +   H+     N +I  Y K   +  A  L + M +R  V+W  ++  Y+Q N  ++
Sbjct: 73  QLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKE 132

Query: 88  TISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLV 147
              +F  M      +PD+  F +L+  C          QV    +   +    +V ++LV
Sbjct: 133 AFELFVQMQRCGT-EPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLV 191

Query: 148 DMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTA 207
           D Y K    + A  +F  +   +SVS+ AM++ Y++ G  + A+ +F             
Sbjct: 192 DSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLF------------- 238

Query: 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV--LELGKQIHGLVI 265
                             +EM+  G+    P   +     CAN  +  + LG+QIH  VI
Sbjct: 239 ------------------VEMQNSGLK---PTEFTFAAVLCANIGLDDIVLGQQIHSFVI 277

Query: 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA 325
              +   +F+SNA++D Y+K   +I A+ +F  M  +D VS+  II G A  G+ +    
Sbjct: 278 KTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFD 337

Query: 326 LYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385
           L+ E+        +  F  ++   S+      GR++    I     +  L     L+D+ 
Sbjct: 338 LFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVG-NSLVDMY 396

Query: 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
           ++ G  +EAE +   +      P W A++SA       E G ++ N +
Sbjct: 397 AKCGKFEEAEMIFTNLTHRSAVP-WTAMISAYVQKGFYEEGLQLFNKM 443



 Score = 45.4 bits (106), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 68/186 (36%), Gaps = 43/186 (23%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L +   I   ++  G++     SN  V  + K  ++  A+ +F +M  K+ VS   +I G
Sbjct: 33  LNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISG 92

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
             + G                                    +G+ RKLF  M+E   +T 
Sbjct: 93  YVKSGN-----------------------------------LGEARKLFDGMVERTAVT- 116

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMP---FEPDEPTWAALLSACKHHRNTEMGTRVA 430
               +T L+   S+     EA  L   M     EPD  T+  LLS C  H      T+V 
Sbjct: 117 ----WTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQ 172

Query: 431 NHLLSL 436
             ++ L
Sbjct: 173 TQIIKL 178


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/670 (33%), Positives = 356/670 (53%), Gaps = 72/670 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C           +H  I K+G+ +   + N L+  Y K + +     + ++M  RD 
Sbjct: 223 LRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDA 282

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++  Y+Q  L +++I +F  M+  ++ +PD     S+++ACG LG    GK VH 
Sbjct: 283 VSWNTMICGYSQVGLYEESIKLFMEMV--NQFKPDLLTITSILQACGHLGDLEFGKYVHD 340

Query: 130 CFVLSPF-------------------------------CDDDVVKSSLVDMYAKCGLPNN 158
             + S +                               C D V  +S++++Y + G  + 
Sbjct: 341 YMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDE 400

Query: 159 ARAVFDSIKLK---NSVSWTAMLSA----------------------------------- 180
           A  +F  +K     +SV++  +LS                                    
Sbjct: 401 AMKLFKMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDM 460

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           YA+ G   D++++FE    R++  W  +++  V S +          MR EGV   D   
Sbjct: 461 YAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGV-TPDMAT 519

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           + SI+  C+  A    GK+IHG +  LG ES + + N +++MY+KC  +  +  +F  M+
Sbjct: 520 MLSILPVCSLLAAKRQGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK 579

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            KDVV+WT++I     +G+ ++ +  + EM +AG+ P+ V FV +I+ACSH GLV +G  
Sbjct: 580 TKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLN 639

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            F  M +DY I P ++HY C++DLLSRS  LD+AE+ I +MP +PD   W ALLSAC+  
Sbjct: 640 YFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMS 699

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
            +TE+  RV+  ++ L P+D   Y+L+SN+YA+   W  V  +RK +    +KK+PG S+
Sbjct: 700 GDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSW 759

Query: 481 IEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLF 540
           +E     ++F  G       +E+ +LL  L   M + GY+ +   VLHD+++ EK   L 
Sbjct: 760 MEIQNKVYVFGTGTKFFEQFEEVNKLLGMLAGLMAKEGYIANLQFVLHDIDEDEKRDILC 819

Query: 541 WHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFK 600
            HSERLA+A+GLL + PGT L+V+KNLRVC DCH V K IS+I +RE++VRDA R+H FK
Sbjct: 820 GHSERLAIAFGLLNTKPGTPLQVMKNLRVCEDCHTVTKYISKIVQRELLVRDANRFHVFK 879

Query: 601 DGKCSCNDFW 610
           DG CSC D+W
Sbjct: 880 DGACSCGDYW 889



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 203/411 (49%), Gaps = 37/411 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K++H +++ +G      + N LID Y + + +  A  + EEMP RD VSW S+++ YN  
Sbjct: 135 KSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNAN 194

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + I+     L  + PD +  +S+++ACG LG+   G  +H          D +V
Sbjct: 195 GYWNEALEIYYRFRNLG-VVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIV 253

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            + L+ MY K          F+ +                      D   IF++  +R+ 
Sbjct: 254 NNGLLSMYCK----------FNGLI---------------------DGRRIFDKMVLRDA 282

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W  ++ G  Q     ++   F+EM  +     D L ++SI+ AC +   LE GK +H 
Sbjct: 283 VSWNTMICGYSQVGLYEESIKLFMEMVNQFKP--DLLTITSILQACGHLGDLEFGKYVHD 340

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +I  GYE     SN +++MYAKC +++A++++F  M+ KD VSW S+I    Q+G  +E
Sbjct: 341 YMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDE 400

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L+ +M+   VKP+ VT+V L+   + +G +  G++L   + +  G   ++     L+
Sbjct: 401 AMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAK-MGFNSNIVVSNTLV 458

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
           D+ ++ G + ++  + + M    D  TW  ++++C H  +  +G R+ + +
Sbjct: 459 DMYAKCGEMGDSLKVFENMK-ARDIITWNTIIASCVHSEDCNLGLRMISRM 508



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 151/324 (46%), Gaps = 38/324 (11%)

Query: 165 SIKLKNSVSWTAMLSA-YARSGRKKDAMEIFEQA-PVRNLFLWTALVSGLVQSRNEIDAF 222
           ++ L +SV ++A L A YA       +  +F  A P  N++LW +++  L  +    +A 
Sbjct: 41  TLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRLASPSNNVYLWNSIIRALTHNGLFSEAL 100

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
             + E +R  +   D     S++ ACA     E+ K IH  V+ +G+ S L+I NA++DM
Sbjct: 101 SLYSETQRIRLQ-PDTYTFPSVINACAGLLDFEMAKSIHDRVLDMGFGSDLYIGNALIDM 159

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           Y + +D+  A+ +F  M  +DVVSW S+I G   +G   E L +Y    + GV P+  T 
Sbjct: 160 YCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTM 219

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL------------------ 384
             ++ AC  +G V +G  +   +IE  GI   +     LL +                  
Sbjct: 220 SSVLRACGGLGSVEEG-DIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMV 278

Query: 385 -------------LSRSGHLDEAENLIKAM--PFEPDEPTWAALLSACKHHRNTEMGTRV 429
                         S+ G  +E+  L   M   F+PD  T  ++L AC H  + E G  V
Sbjct: 279 LRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYV 338

Query: 430 ANHLLSLKPE-DPSSYILLSNVYA 452
            +++++   E D ++  +L N+YA
Sbjct: 339 HDYMITSGYECDTTASNILINMYA 362



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 82/179 (45%), Gaps = 5/179 (2%)

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
           + SSI  A A+ A      ++H L+I LG    +  S  ++  YA   D  ++  +F R+
Sbjct: 15  LFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVF-RL 73

Query: 300 R--RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357
                +V  W SII     +G   E L+LY E     ++P+  TF  +I AC+ + L  +
Sbjct: 74  ASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGL-LDFE 132

Query: 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             K     + D G    L     L+D+  R   LD+A  + + MP   D  +W +L+S 
Sbjct: 133 MAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR-DVVSWNSLISG 190


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/606 (36%), Positives = 341/606 (56%), Gaps = 34/606 (5%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           +Y   L  C   +     K LHA++ +LG+     L   L++ Y  C+ ++ AHHL +++
Sbjct: 60  YYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLATKLVNFYSVCNSLRNAHHLFDKI 119

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           P+ +   W  ++ AY      +  IS++  ML    L+PD+F    ++KAC +L     G
Sbjct: 120 PKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYG-LKPDNFTLPFVLKACSALSTIGEG 178

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           + +H   + S +  D  V ++LVDMYAKCG                              
Sbjct: 179 RVIHERVIRSGWERDVFVGAALVDMYAKCGCV---------------------------- 210

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
               DA  +F++   R+  LW ++++   Q+ +  ++     EM  +GV   +   L ++
Sbjct: 211 ---VDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEA-TLVTV 266

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + + A+ A L  G++IHG     G++    +  A++DMYAKC  +  A  +F R+R K V
Sbjct: 267 ISSSADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRV 326

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           VSW +II G A HG A E L L++ M+    +P+ +TFVG + ACS   L+ +GR L+  
Sbjct: 327 VSWNAIITGYAMHGLAVEALDLFERMMKEA-QPDHITFVGALAACSRGRLLDEGRALYNL 385

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           M+ D  I P+++HYTC++DLL   G LDEA +LI+ M   PD   W ALL++CK H N E
Sbjct: 386 MVRDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVE 445

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +       L+ L+P+D  +Y++L+N+YA +  W+ V+++R+LM    +KK    S+IE  
Sbjct: 446 LAEVALEKLIELEPDDSGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWIEVK 505

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
              + F +G+ SHP    I+  L  L+  M+  GYVPDT SV HD+E+ EK   +  HSE
Sbjct: 506 NKVYAFLSGDVSHPNSGAIYAELKRLEGLMREAGYVPDTGSVFHDVEEDEKTDMVCSHSE 565

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           RLA+A+GL+ ++PGT L + KNLR+C DCH+ +K IS+IT+REI VRD  RYHHF+ G C
Sbjct: 566 RLAIAFGLISTLPGTRLLITKNLRICEDCHVAIKFISKITEREITVRDVNRYHHFRHGLC 625

Query: 605 SCNDFW 610
           SC D+W
Sbjct: 626 SCGDYW 631



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 158/341 (46%), Gaps = 48/341 (14%)

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
           +PQ  +  F +         +H+ +ASL+++C S  A   GKQ+HA         +  + 
Sbjct: 43  IPQHKVDSFPSS------PSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLDLA 96

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           + LV+ Y+ C    NA  +FD I   N   W  ++ AYA +G  + A+ ++ Q       
Sbjct: 97  TKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQ------- 149

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
               L  GL                        D   L  ++ AC+  + +  G+ IH  
Sbjct: 150 ---MLEYGLKP----------------------DNFTLPFVLKACSALSTIGEGRVIHER 184

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           VI  G+E  +F+  A+VDMYAKC  ++ A+ +F ++  +D V W S++   AQ+G  +E+
Sbjct: 185 VIRSGWERDVFVGAALVDMYAKCGCVVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDES 244

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY----T 379
           L+L  EM + GV+P E T V +I + + +  +  GR+     I  +G     Q+     T
Sbjct: 245 LSLCCEMAAKGVRPTEATLVTVISSSADIACLPHGRE-----IHGFGWRHGFQYNDKVKT 299

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            L+D+ ++ G +  A  L + +  E    +W A+++    H
Sbjct: 300 ALIDMYAKCGSVKVACVLFERLR-EKRVVSWNAIITGYAMH 339


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/611 (35%), Positives = 335/611 (54%), Gaps = 52/611 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLP----------NTLIDAYGKCDLVQYAHH 59
           +++C RH  A      H ++I   +  +GPLP          N+L   Y K  L+  A  
Sbjct: 71  VKLCVRHGTAD-----HGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDDALR 125

Query: 60  LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
           + + MP R+ V+W +++ A   A+  ++    F   +  D + P+ + F+S++ AC + G
Sbjct: 126 MFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACTTPG 185

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
              +   VHA  V +    D  V+SSL+D Y K G  +  R                   
Sbjct: 186 ---MLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGR------------------- 223

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
                        +F++   R+L +W ++++G  QS + + A   F+ M+  G    +  
Sbjct: 224 ------------RVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFS-SNQG 270

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
            L+S++ AC    +LE G+Q+H  V  L Y+  L + NA++DMY KC  +  A  +F RM
Sbjct: 271 TLTSVLRACTGMVMLEAGRQVHAHV--LKYDRDLILHNALLDMYCKCGSLEDADALFHRM 328

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
            ++DV+SW++++ G AQ+G++ E L ++D M S GV PN VT VG+++ACSH GLV  G 
Sbjct: 329 PQRDVISWSTMVSGLAQNGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGW 388

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
             F+SM   +GI P  +H+ C++DLL R+G LDEA   I  M  EPD   W  LL AC+ 
Sbjct: 389 HYFRSMKRLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRM 448

Query: 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
           H+N  +    A  +L L+P+D  + +LLSN YA    W    K  K M    ++KEPG S
Sbjct: 449 HKNASLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRS 508

Query: 480 YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL 539
           +IE  K  H+F AG+ SHP  D I + L  L   +K  GYVP T  VL D+  ++KE  L
Sbjct: 509 WIELEKRVHVFIAGDLSHPCSDTIIQELNRLIGRIKSLGYVPQTEFVLQDLPTEQKEDLL 568

Query: 540 FWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
            +HSE++A+ +G + +V G  +R++KNLR+CGDCH   K++S+   R IV+RD  R+HHF
Sbjct: 569 KYHSEKMAIVFGTMHAVDGKPIRIMKNLRICGDCHAFAKLVSKSEGRVIVIRDPVRFHHF 628

Query: 600 KDGKCSCNDFW 610
           +DG CSC D+W
Sbjct: 629 QDGACSCGDYW 639



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 98/239 (41%), Gaps = 46/239 (19%)

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALG-----YESCLFISNAIVDMYAKCSDIIA 291
           DP+ L+ +V  C      + G+ IH  V A G         LF+SN++  MYAK   +  
Sbjct: 63  DPVSLTRLVKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFGLLDD 122

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQ-HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350
           A  +F  M  ++VV+WT+++   A   G+ +E L     M   GV PN  TF  ++ AC+
Sbjct: 123 ALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVLGACT 182

Query: 351 HVGL--------------------------------VGKGRKLFKSMIEDYGITPSLQHY 378
             G+                                +  GR++F  M     +T  L  +
Sbjct: 183 TPGMLTAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEM-----VTRDLVVW 237

Query: 379 TCLLDLLSRSGHLDEAENLIKAMP---FEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
             ++   ++SG    A  L   M    F  ++ T  ++L AC      E G +V  H+L
Sbjct: 238 NSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGRQVHAHVL 296


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 230/594 (38%), Positives = 339/594 (57%), Gaps = 6/594 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ-RDHVSWASILTAYN 80
           +K +HAQ++  GL Q   L   LI +Y  C  + +A  + ++ P     + W  ++ AY+
Sbjct: 71  IKQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYS 130

Query: 81  QANLPQKTISIFSTMLALDK-LQPDHFVFASLVKACGSLGATR-LGKQVHACFVLSPFCD 138
           +    Q+++ +F  MLA  +    D + F  +  AC      R  G+ VH   V   +  
Sbjct: 131 KTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYES 190

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  V +SLV+MY+      +A+ VFD +  ++ ++WT+++  YA  G    A E+F+  P
Sbjct: 191 DIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMP 250

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            RN   W  +V+G V  R   +A   F +M        +  VL SI+ ACA+   L+ GK
Sbjct: 251 GRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGK 310

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
            IH  +          IS A++DMYAKC  I  A+ +F  + ++D+++WTS+I G + HG
Sbjct: 311 WIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLSMHG 370

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
              E L  + EM++ G KP+++T +G++  CSH GLV +G  +F  MI  +GI P L+HY
Sbjct: 371 LGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKLEHY 430

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
            CL+DLL R+G L+ A   IK+MP EPD   W ALLSAC+ H + ++G R+ NH+  L P
Sbjct: 431 GCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAELCP 490

Query: 439 -EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
                 Y+LLSN+YAS   W+ V+KVRK MS    +  PG S+IE     H F A +  H
Sbjct: 491 GSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAADKLH 550

Query: 498 PLKDEIFELLTELDAEMK-RRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSV 556
           P   EI + L E+   +    GYVP T  VL D+ +++KE+ + WHSE+LAVA+GLL + 
Sbjct: 551 PRISEINKKLNEVLRRISIEGGYVPSTKQVLFDLNEEDKEQAVSWHSEKLAVAFGLLSTQ 610

Query: 557 PGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            GT+ R+ KNLR C DCH  MK IS +  REIVVRD +R+H F+ G CSC D+W
Sbjct: 611 EGTI-RITKNLRTCEDCHSAMKTISLVFNREIVVRDRSRFHTFRYGNCSCTDYW 663



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 3/173 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K +H  I K  +     +   LID Y KC  +  A  + + + +RD 
Sbjct: 297 LSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDL 356

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV-H 128
           ++W S+++  +   L  + +  FS MLA +  +PD      ++  C   G    G  + H
Sbjct: 357 LTWTSMISGLSMHGLGAECLWTFSEMLA-EGFKPDDITLLGVLNGCSHSGLVEEGLSIFH 415

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
               L            L+D+  + G   +A     S+ ++ + V+W A+LSA
Sbjct: 416 DMIPLWGIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSA 468


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/602 (36%), Positives = 338/602 (56%), Gaps = 34/602 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C +  +       H+ ++ LG+     +  +L+D Y        A  + + M  R  
Sbjct: 253 LKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSL 312

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW ++++ Y Q  +  ++ ++F  ++       D     SL++ C        G+ +H+
Sbjct: 313 ISWNAMISGYVQNGMIPESYALFRRLVQSGS-GFDSGTLVSLIRGCSQTSDLENGRILHS 371

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
           C +        V+ +++VDMY+KCG    A  V                  + R G+K  
Sbjct: 372 CIIRKELESHLVLSTAIVDMYSKCGAIKQATIV------------------FGRMGKK-- 411

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
                      N+  WTA++ GL Q+    DA   F +M+ E V   + + L S+V  CA
Sbjct: 412 -----------NVITWTAMLVGLSQNGYAEDALKLFCQMQEEKV-AANSVTLVSLVHCCA 459

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR-MRRKDVVSWT 308
           +   L  G+ +H   I  GY     I++A++DMYAKC  I +A+ +F      KDV+   
Sbjct: 460 HLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCN 519

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           S+I+G   HG     L +Y  M+   +KPN+ TFV L+ ACSH GLV +G+ LF SM  D
Sbjct: 520 SMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKALFHSMERD 579

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           + + P  +HY CL+DL SR+G L+EA+ L+K MPF+P      ALLS C+ H+NT MG +
Sbjct: 580 HDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQ 639

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
           +A+ L+SL   +   Y++LSN+YA A  W+ V+ +R LM +  +KK PGYS IE G   +
Sbjct: 640 IADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKKIPGYSLIEVGNKVY 699

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F+A + SHP   +I++LL  L  E++  GY+PDTS VL D+ +  K + L+ HSERLA+
Sbjct: 700 TFFASDDSHPSWADIYQLLENLRLEVEAEGYIPDTSCVLRDVNEPMKVKLLWGHSERLAI 759

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+GLL +  G+++++ KNLRVC DCH V K IS+I +REI+VRDA R+HHF +GKCSCND
Sbjct: 760 AFGLLSTPCGSLIKITKNLRVCVDCHNVTKYISKIVQREIIVRDANRFHHFVNGKCSCND 819

Query: 609 FW 610
           FW
Sbjct: 820 FW 821



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 178/402 (44%), Gaps = 38/402 (9%)

Query: 16  HQIALT---VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           HQ + T   VK++HAQIIK  +     L   LI  Y     + +A ++ ++    +    
Sbjct: 54  HQFSNTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFDQCSLPETAVC 113

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            +++  + +     +   +F  M + D ++ + +     +KAC  L    +G ++    V
Sbjct: 114 NAMIAGFLRNQQHMEVPRLFRMMGSCD-IEINSYTCMFALKACTDLLDDEVGMEIIRAAV 172

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
              F     V SS+V+   K                                G   DA +
Sbjct: 173 RRGFHLHLYVGSSMVNFLVK-------------------------------RGYLADAQK 201

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F+  P +++  W +++ G VQ     ++   F+EM   G+    P+ +++++ AC    
Sbjct: 202 VFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLEMIGGGLR-PSPVTMANLLKACGQSG 260

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
           + ++G   H  V+ALG  + +F+  ++VDMY+   D  +A  +F  M  + ++SW ++I 
Sbjct: 261 LKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMIS 320

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G  Q+G   E+ AL+  +V +G   +  T V LI  CS    +  GR L   +I    + 
Sbjct: 321 GYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKE-LE 379

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
             L   T ++D+ S+ G + +A  +   M  + +  TW A+L
Sbjct: 380 SHLVLSTAIVDMYSKCGAIKQATIVFGRMG-KKNVITWTAML 420


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/605 (36%), Positives = 334/605 (55%), Gaps = 42/605 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA        + +H   +K  +H      NTL+D Y KC ++  A  + + M  R  
Sbjct: 5   LQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVRTV 64

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W S++ AY +  L  + I +F  M   + + PD F   +++ AC   G+   GK VH 
Sbjct: 65  VTWTSLIAAYAREGLSDEAIRLFHEM-DREGVSPDIFTITTVLHACACNGSLENGKDVHN 123

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               +    +  V ++L+DMYAKC                               G  +D
Sbjct: 124 YIRENDMQSNIFVCNALMDMYAKC-------------------------------GSMED 152

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSF----IEMRREGVDIVDPLVLSSIV 245
           A  +F + PV+++  W  ++ G  ++    +A   F    +EM+ +G        L+ I+
Sbjct: 153 ANSVFLEMPVKDIISWNTMIGGYSKNSLPNEALSLFGDMVLEMKPDGT------TLACIL 206

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            ACA+ A L+ GK++HG ++  G+ S   ++NA+VDMY KC   + A+ +F  +  KD++
Sbjct: 207 PACASLASLDRGKEVHGHILRNGFFSDQQVANALVDMYVKCGVPVLARLLFDMIPTKDLI 266

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +WT +I G   HG     +  ++EM  AG++P+EV+F+ ++YACSH GL+ +G + F  M
Sbjct: 267 TWTVMIAGYGMHGFGNNAITTFNEMRQAGIEPDEVSFISILYACSHSGLLDEGWRFFNVM 326

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
            ++  + P L+HY C++DLL+RSG L  A   IK+MP EPD   W ALLS C+ H + ++
Sbjct: 327 QDECNVKPKLEHYACIVDLLARSGKLAMAYKFIKSMPIEPDATIWGALLSGCRIHHDVKL 386

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
             +VA H+  L+PE+   Y+LL+N YA A  W+ V K+R+ +    +KK PG S+IE   
Sbjct: 387 AEKVAEHVFELEPENTGYYVLLANTYAEAEKWEEVKKLRQKIGRRGLKKNPGCSWIEVKS 446

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             HIF AG +SHP   +I  LL  L ++MK  GY P T   L + +  +KE  L  HSE+
Sbjct: 447 KVHIFLAGNSSHPQAKKIEVLLKRLRSKMKEEGYFPKTRYALINADSLQKETALCGHSEK 506

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+A+G+L   P   +RV KNLRVCGDCH + K IS+   REIV+RD+ R+HHFKDG C 
Sbjct: 507 LAMAFGILNLPPARTIRVSKNLRVCGDCHEMAKFISKTLGREIVLRDSNRFHHFKDGVCC 566

Query: 606 CNDFW 610
           C  FW
Sbjct: 567 CRGFW 571



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 115/221 (52%), Gaps = 11/221 (4%)

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLF----ISNAIVDMYAKCSDIIAAKDIF 296
           + SI+ ACAN   + LG+ +HG     G ++C+       N ++DMYAKC  +  A  +F
Sbjct: 1   MVSILQACANCGDVSLGRAVHG----SGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVF 56

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
             M  + VV+WTS+I   A+ G ++E + L+ EM   GV P+  T   +++AC+  G + 
Sbjct: 57  DLMSVRTVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACACNGSLE 116

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G+ +  + I +  +  ++     L+D+ ++ G +++A ++   MP + D  +W  ++  
Sbjct: 117 NGKDV-HNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVK-DIISWNTMIGG 174

Query: 417 -CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
             K+    E  +   + +L +KP+  +   +L    + A++
Sbjct: 175 YSKNSLPNEALSLFGDMVLEMKPDGTTLACILPACASLASL 215


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 216/569 (37%), Positives = 333/569 (58%), Gaps = 35/569 (6%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           LI  Y     ++ A  L +E+P +D VSW ++++ Y +    ++ + +F  M+  + ++P
Sbjct: 206 LIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTN-VRP 264

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D     ++V AC   G+  LG+QVH       F  +  + ++L+D+Y+KCG         
Sbjct: 265 DESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCG--------- 315

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
                                   + A  +FE+ P +++  W  L+ G        +A  
Sbjct: 316 ----------------------ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALL 353

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL--GYESCLFISNAIVD 281
            F EM R G +  + + + SI+ ACA+   +++G+ IH  +     G  +   +  +++D
Sbjct: 354 LFQEMLRSG-ETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLID 412

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MYAKC DI AA  +F  +  K + SW ++I G A HG+A+ +  L+  M   G++P+++T
Sbjct: 413 MYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDIT 472

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           FVGL+ ACSH G++  GR +F++M +DY +TP L+HY C++DLL  SG   EAE +I  M
Sbjct: 473 FVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMM 532

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
             EPD   W +LL ACK H N E+G   A +L+ ++PE+P SY+LLSN+YASA  W  V+
Sbjct: 533 EMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVA 592

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           K R L++   +KK PG S IE     H F  G+  HP   EI+ +L E++  +++ G+VP
Sbjct: 593 KTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVP 652

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           DTS VL +ME++ KE  L  HSE+LA+A+GL+ + PGT L +VKNLRVC +CH   K+IS
Sbjct: 653 DTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLIS 712

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I KREI+ RD TR+HHF+DG CSCND+W
Sbjct: 713 KIYKREIIARDRTRFHHFRDGVCSCNDYW 741



 Score =  202 bits (513), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 128/451 (28%), Positives = 235/451 (52%), Gaps = 48/451 (10%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL------VQYAHHLLEEMPQRDHVSWAS 74
           +++ +HAQ+IK+GLH      + LI+    C L      + YA  + + + + + + W +
Sbjct: 48  SLRIIHAQMIKIGLHNTNYALSKLIEF---CILSPHFEGLPYAISVFKTIQEPNLLIWNT 104

Query: 75  ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134
           +   +  ++ P   + ++  M++L  L P+ + F  ++K+C    A + G+Q+H   VL 
Sbjct: 105 MFRGHALSSDPVSALKLYVCMISLG-LLPNSYTFPFVLKSCAKSKAFKEGQQIHG-HVLK 162

Query: 135 PFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
             CD D+ V +SL+ MY + G   +A  VFD    ++ VS+TA++  YA  G  ++A ++
Sbjct: 163 LGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKL 222

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
           F++ PV+++  W A++SG  ++ N  +A   F +M +  V   D   + ++V ACA    
Sbjct: 223 FDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVR-PDESTMVTVVSACAQSGS 281

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           +ELG+Q+H  +   G+ S L I NA++D+Y+KC ++  A  +F R+  KDV+SW ++I G
Sbjct: 282 IELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGG 341

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY-GIT 372
                  +E L L+ EM+ +G  PN+VT + ++ AC+H+G +  GR +   + +   G+T
Sbjct: 342 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVT 401

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLI-----------KAMPF------------------ 403
            +    T L+D+ ++ G ++ A  +             AM F                  
Sbjct: 402 NASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRM 461

Query: 404 -----EPDEPTWAALLSACKHHRNTEMGTRV 429
                +PD+ T+  LLSAC H    ++G  +
Sbjct: 462 RKIGIQPDDITFVGLLSACSHSGMLDLGRHI 492


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 213/618 (34%), Positives = 340/618 (55%), Gaps = 35/618 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDL--VQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           LH  +++ G  Q   +   L+  Y         +A  +   +P  +   W  ++    + 
Sbjct: 52  LHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVFIWNIVIKGCLEN 111

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           N   K I  +  M+     +P+ F + +L KAC    A + G+Q+H   V      D  +
Sbjct: 112 NKLFKAIYFYGRMVI--DARPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHGIGSDVHI 169

Query: 143 KSSLVDMYA------------------------------KCGLPNNARAVFDSIKLKNSV 172
           KS+ + MYA                              KCG+   A+ +F  + +KN  
Sbjct: 170 KSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQMPVKNIG 229

Query: 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
           SW  M++  A+ G   DA ++F++   R+   W+++V G + +    +A   F +M+RE 
Sbjct: 230 SWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGYISAGRYKEALEIFQQMQREE 289

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
                  +LSS++ AC+N   ++ G+ +H  +     +    +  A++DMYAKC  +   
Sbjct: 290 TR-PGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAKCGRLDMG 348

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
            ++F  M+ +++ +W ++I G A HG+AE+ L L+ ++    +KPN +T VG++ AC+H 
Sbjct: 349 WEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGVLTACAHA 408

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           G V KG ++F++M E YG+ P L+HY C++DLL RSG   EAE+LI +MP +P+   W A
Sbjct: 409 GFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKPNAAVWGA 468

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
           LL AC+ H N ++  RV   LL L+P++   Y+LLSN+YA    +  VSK+RKLM    +
Sbjct: 469 LLGACRIHGNFDLAERVGKILLELEPQNSGRYVLLSNIYAKVGRFDDVSKIRKLMKDRGI 528

Query: 473 KKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQ 532
           K  PG S ++     H F  G+ SHP   EI+  L  +   ++  G+ PDTS VL D+++
Sbjct: 529 KTVPGVSIVDLNGTVHEFKMGDGSHPQMKEIYRKLKIIKERLQMAGHSPDTSQVLFDIDE 588

Query: 533 KEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRD 592
           +EKE  + +HSE+LA+A+GL+ ++PG  + +VKNLRVC DCH   K+IS+I  REI+VRD
Sbjct: 589 EEKETAVNYHSEKLAIAFGLINTLPGKRIHIVKNLRVCDDCHSATKLISQIFDREIIVRD 648

Query: 593 ATRYHHFKDGKCSCNDFW 610
             RYHHFK+G CSC DFW
Sbjct: 649 RVRYHHFKNGTCSCKDFW 666


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 226/603 (37%), Positives = 346/603 (57%), Gaps = 43/603 (7%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQY---AHHLLEEMPQRDH 69
           CA    A   + LH+ +++LGL     +   L+D Y K  + Q    A  + + MP  + 
Sbjct: 259 CAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNV 318

Query: 70  VSWASILTAYNQ-ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
           +SW ++++ Y Q        + +   ML  + ++P+H  ++SL+KAC +L     G+Q+H
Sbjct: 319 MSWTALISGYVQCGGQENNAVELLCEMLN-ESIEPNHLTYSSLLKACANLSDQDSGRQIH 377

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           A  + +   + +VV ++LV MY                               A SG  +
Sbjct: 378 ARVMKTSIGNVNVVGNALVSMY-------------------------------AESGCME 406

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A + F+Q   RNL    +  S + ++     ++ S IE    GV        +S++ A 
Sbjct: 407 EARKAFDQLYERNLL---STSSDIGETGRSNASWSSQIESMDVGVST---FTFASLLSAA 460

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-DVVSW 307
           A   +   G+Q+H L I  G+ES   ISN++V MY++C  +  A   F  M    +V+SW
Sbjct: 461 ATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISW 520

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           TSII   A+HG AE  L+L+ +M+ +GVKPN+VT++ ++ ACSHVGLV +G++ F+SM +
Sbjct: 521 TSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLSACSHVGLVKEGKEYFRSMQK 580

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
           D+ + P ++HY C++DLL+RSG + EA   I  MP + D   W  LL AC+ + N E+G 
Sbjct: 581 DHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADALVWKTLLGACRTYENIEIGE 640

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
             A H++ L+P+DP+ Y+LLSN+YA   +W  V+++R LM    + KE G S++  G   
Sbjct: 641 IAARHVIDLEPQDPAPYVLLSNLYAHGGLWDEVARIRSLMRHRNLSKETGLSWMHVGNTI 700

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
           H F AG+TSHP   EI+  L  L  E+K  GYVPDTS VLHDM  K KE+ L  HSE++A
Sbjct: 701 HEFRAGDTSHPRAQEIYAKLAVLIREIKDIGYVPDTSIVLHDMSDKLKEQCLLQHSEKIA 760

Query: 548 VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
           VA+GL+ ++P   +R+ KNLRVC DCH  +K IS+ T REI++RD+ R+H  KDGKCSC 
Sbjct: 761 VAFGLITTLPTKPIRIFKNLRVCADCHSAIKYISKSTGREIILRDSNRFHRMKDGKCSCG 820

Query: 608 DFW 610
           ++W
Sbjct: 821 EYW 823



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 195/416 (46%), Gaps = 55/416 (13%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           LID + +   +  A  +   + +R  V W  ++T Y Q     K + +F  ML  D  +P
Sbjct: 189 LIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLE-DGFEP 247

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN---AR 160
           D +  +S+V AC   G+  LG+Q+H+  +      D  V   LVDMY K  +  +   AR
Sbjct: 248 DGYTMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECAR 307

Query: 161 AVFDSIKLKNSVSWTAMLSAYAR-SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
            VF  +   N +SWTA++S Y +  G++ +A+E+                          
Sbjct: 308 KVFKRMPTHNVMSWTALISGYVQCGGQENNAVEL-------------------------- 341

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
                  EM  E ++  + L  SS++ ACAN +  + G+QIH  V+     +   + NA+
Sbjct: 342 -----LCEMLNESIE-PNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNAL 395

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           V MYA+   +  A+  F ++  ++++S +S I    + G++  + +   E +  GV  + 
Sbjct: 396 VSMYAESGCMEEARKAFDQLYERNLLSTSSDI---GETGRSNASWSSQIESMDVGV--ST 450

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIE-----DYGITPSLQHYTCLLDLLSRSGHLDEA 394
            TF  L+ A + VGL  KG++L    I+     D GI+ S      L+ + SR G+LD+A
Sbjct: 451 FTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISNS------LVSMYSRCGYLDDA 504

Query: 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPEDPSSYILLS 448
                 M  + +  +W +++SA   H + E    + + ++   +KP D +   +LS
Sbjct: 505 CRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLS 560



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 172/370 (46%), Gaps = 57/370 (15%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQ-RDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
           + N+L+  Y KC  V+ A  + + M   RD VSW ++     +    Q+ + +   ML  
Sbjct: 81  VANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLLGEMLE- 139

Query: 99  DKLQPDHFVFASLVKAC--GSL----GATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK 152
             L+P+ F   +   AC  G L    G T LG  +   F    +  D  V  +L+DM+A+
Sbjct: 140 SGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGF----WGTDVSVGCALIDMFAR 195

Query: 153 CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGL 212
            G    AR VF+ +  +  V WT M++ Y + G    A+E+F                G+
Sbjct: 196 NGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELF---------------LGM 240

Query: 213 VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC 272
           ++   E D +                  +SS+V ACA      LG+Q+H LV+ LG  S 
Sbjct: 241 LEDGFEPDGY-----------------TMSSMVSACAEQGSAGLGQQLHSLVLRLGLVSD 283

Query: 273 LFISNAIVDMYAKC---SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ-HGQAEETLALYD 328
             +S  +VDMY K      +  A+ +F RM   +V+SWT++I G  Q  GQ    + L  
Sbjct: 284 TCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLC 343

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGR----KLFKSMIEDYGITPSLQHYTCLLDL 384
           EM++  ++PN +T+  L+ AC+++     GR    ++ K+ I +  +  +      L+ +
Sbjct: 344 EMLNESIEPNHLTYSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGN-----ALVSM 398

Query: 385 LSRSGHLDEA 394
            + SG ++EA
Sbjct: 399 YAESGCMEEA 408



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 141/301 (46%), Gaps = 41/301 (13%)

Query: 123 LGKQVHACFVLSPFCDDD-VVKSSLVDMYAKCGLPNNARAVFDSIK-LKNSVSWTAMLSA 180
           LG+ +H   + +   D D +V +SL+ MY+KCG    AR VFD ++ L++ VSWTAM   
Sbjct: 61  LGRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFC 120

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
             R+G +++A+          + L   L SGL       +AF                  
Sbjct: 121 LTRNGAEQEAL----------VLLGEMLESGL-----RPNAF-----------------T 148

Query: 241 LSSIVGACANFAVLE-LGKQIHGLVIALGYESC-LFISNAIVDMYAKCSDIIAAKDIFGR 298
           L +   AC    +    G  + G  I  G+    + +  A++DM+A+  D++AA+ +F  
Sbjct: 149 LCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFARNGDLVAARKVFNG 208

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
           +  + VV WT +I    Q G A + + L+  M+  G +P+  T   ++ AC+  G  G G
Sbjct: 209 LVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSACAEQGSAGLG 268

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSR---SGHLDEAENLIKAMPFEPDEPTWAALLS 415
           ++L  S++   G+         L+D+ ++      ++ A  + K MP   +  +W AL+S
Sbjct: 269 QQL-HSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTH-NVMSWTALIS 326

Query: 416 A 416
            
Sbjct: 327 G 327



 Score = 82.8 bits (203), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 49/190 (25%), Positives = 100/190 (52%), Gaps = 7/190 (3%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   L+ CA      + + +HA+++K  +     + N L+  Y +   ++ A    +++ 
Sbjct: 357 YSSLLKACANLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEARKAFDQLY 416

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +R+ +S +S +    ++N      + +S+ +    +    F FASL+ A  ++G    G+
Sbjct: 417 ERNLLSTSSDIGETGRSN------ASWSSQIESMDVGVSTFTFASLLSAAATVGLPTKGQ 470

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARS 184
           Q+HA  + + F  D  + +SLV MY++CG  ++A   FD ++   N +SWT+++SA A+ 
Sbjct: 471 QLHALSIKTGFESDKGISNSLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKH 530

Query: 185 GRKKDAMEIF 194
           G  + A+ +F
Sbjct: 531 GHAERALSLF 540



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 102/239 (42%), Gaps = 47/239 (19%)

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRR-KDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
            ++N+++ MY+KC  + AA+ +F  MR  +D+VSWT++     ++G  +E L L  EM+ 
Sbjct: 80  LVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLLGEMLE 139

Query: 333 AGVKPNEVTFVGLIYAC-------------------------------------SHVGLV 355
           +G++PN  T     +AC                                     +  G +
Sbjct: 140 SGLRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFARNGDL 199

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAA 412
              RK+F  ++E   +      +T ++    + G   +A  L   M    FEPD  T ++
Sbjct: 200 VAARKVFNGLVERTVVV-----WTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSS 254

Query: 413 LLSACKHHRNTEMGTRVANHLLSLK-PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470
           ++SAC    +  +G ++ + +L L    D      L ++Y    M Q +   RK+   M
Sbjct: 255 MVSACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRM 313


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/568 (38%), Positives = 335/568 (58%), Gaps = 7/568 (1%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           ++  Y K   ++ A    + MP+R  VSW ++L+ Y Q  L ++ + +F  M+    ++P
Sbjct: 200 MVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAG-IEP 258

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D   + +++ AC S G   L   +           +  V+++L+DMYAKCG    AR +F
Sbjct: 259 DETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCFVRTALLDMYAKCGSIGAARRIF 318

Query: 164 DSI-KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
           D +   +NSV+W AM+SAY R G    A E+F   P RN+  W ++++G  Q+     A 
Sbjct: 319 DELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAI 378

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
             F EM        D + + S++ AC +   LELG  +   +     +  +   NA++ M
Sbjct: 379 ELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFM 438

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           Y++C  +  AK +F  M  +DVVS+ ++I G A HG   E + L   M   G++P+ VTF
Sbjct: 439 YSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTF 498

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
           +G++ ACSH GL+ +GRK+F+S I+D    P++ HY C++DLL R G L++A+  ++ MP
Sbjct: 499 IGVLTACSHAGLLEEGRKVFES-IKD----PAIDHYACMVDLLGRVGELEDAKRTMERMP 553

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462
            EP    + +LL+A + H+  E+G   AN L  L+P++  ++ILLSN+YASA  W+ V +
Sbjct: 554 MEPHAGVYGSLLNASRIHKQVELGELAANKLFELEPDNSGNFILLSNIYASAGRWKDVER 613

Query: 463 VRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPD 522
           +R+ M    VKK  G+S++E+G   H F   + SH   D+I++LL EL  +M+  GY+ D
Sbjct: 614 IREAMKKGGVKKTTGWSWVEYGGKLHKFIVADRSHERSDDIYQLLIELRKKMREAGYIAD 673

Query: 523 TSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISR 582
            S VL D+E++EKE  +  HSE+LA+ Y LL S  G V+RVVKNLRVC DCH  +KMIS+
Sbjct: 674 KSCVLRDVEEEEKEEIVGTHSEKLAICYALLVSEAGAVIRVVKNLRVCWDCHTAIKMISK 733

Query: 583 ITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +  R I+VRD  R+H F DG CSC D+W
Sbjct: 734 LEGRVIIVRDNNRFHCFNDGLCSCKDYW 761



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 109/472 (23%), Positives = 184/472 (38%), Gaps = 126/472 (26%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQ----YAHHLLEEMPQRDHVSWASILT 77
           ++ LHAQII   LH +      LI+    C  ++    Y H L       +   + S+L 
Sbjct: 17  LRQLHAQIIHNSLHHHNYWVALLIN---HCTRLRAPPHYTHLLFNSTLNPNVFVFTSMLR 73

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
            Y+      K + +F  M     ++PD FV+  L+K+ G+ G        HA  +     
Sbjct: 74  FYSHLQDHAKVVLMFEHMQGCG-VRPDAFVYPILIKSAGNGGIG-----FHAHVLKLGHG 127

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D  V+++++DMYA+ G   +AR                               ++F++ 
Sbjct: 128 SDAFVRNAVIDMYARLGPIGHAR-------------------------------KVFDEI 156

Query: 198 P--VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
           P   R +  W A+VSG  +  +E  A + F  M    V                      
Sbjct: 157 PDYERKVADWNAMVSGYWKWESEGQAQWLFDVMPERNV---------------------- 194

Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
                                 A+V  YAK  D+ AA+  F  M  + VVSW +++ G A
Sbjct: 195 ------------------ITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYA 236

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS------------------------- 350
           Q+G AEE L L+DEMV+AG++P+E T+V +I ACS                         
Sbjct: 237 QNGLAEEVLRLFDEMVNAGIEPDETTWVTVISACSSRGDPCLAASLVRTLHQKQIQLNCF 296

Query: 351 ----------HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
                       G +G  R++F    ++ G   +   +  ++   +R G+LD A  L   
Sbjct: 297 VRTALLDMYAKCGSIGAARRIF----DELGAYRNSVTWNAMISAYTRVGNLDSARELFNT 352

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           MP   +  TW ++++    +  + M   +   +++ K   P    ++S + A
Sbjct: 353 MPGR-NVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISA 403



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 64/277 (23%), Positives = 120/277 (43%), Gaps = 52/277 (18%)

Query: 31  KLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTIS 90
           +LG ++     N +I AY +   +  A  L   MP R+ V+W S++  Y Q       I 
Sbjct: 320 ELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVTWNSMIAGYAQNGQSAMAIE 379

Query: 91  IFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK------S 144
           +F  M+   KL PD     S++ ACG LGA  LG  V        F  ++ +K      +
Sbjct: 380 LFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWV------VRFLTENQIKLSISGHN 433

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +++ MY++CG   +A+ VF  +  ++ VS+  ++S +A  G   +A+ +           
Sbjct: 434 AMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAINLMST-------- 485

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                                  M+  G++  D +    ++ AC++  +LE G+++   +
Sbjct: 486 -----------------------MKEGGIE-PDRVTFIGVLTACSHAGLLEEGRKVFESI 521

Query: 265 I--ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
              A+ + +C+      VD+  +  ++  AK    RM
Sbjct: 522 KDPAIDHYACM------VDLLGRVGELEDAKRTMERM 552



 Score = 47.4 bits (111), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 34/148 (22%), Positives = 69/148 (46%), Gaps = 9/148 (6%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           V+ L    IKL +  +    N +I  Y +C  ++ A  + +EM  RD VS+ ++++ +  
Sbjct: 417 VRFLTENQIKLSISGH----NAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAA 472

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
                + I++ STM     ++PD   F  ++ AC   G    G++V    +  P  D   
Sbjct: 473 HGHGVEAINLMSTMKE-GGIEPDRVTFIGVLTACSHAGLLEEGRKVFES-IKDPAIDH-- 528

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLK 169
             + +VD+  + G   +A+   + + ++
Sbjct: 529 -YACMVDLLGRVGELEDAKRTMERMPME 555


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 222/607 (36%), Positives = 357/607 (58%), Gaps = 9/607 (1%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAY---GKCDLVQYAHHLLEE 63
           LH L+ C+  +    ++ +H Q++K GL     +P + + A+        + YA  + + 
Sbjct: 22  LHLLQRCSNME---ELRQIHGQMLKTGL-ILDEIPASKLLAFCASPNSGSLAYARTVFDR 77

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           + + +   W +++  Y+ +  P++ + ++  ML    +  + + F  L+KAC S+ A   
Sbjct: 78  IFRPNTFMWNTMIRGYSNSKEPEEALLLYHHML-YHSVPHNAYTFPFLLKACSSMSALEE 136

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
            +Q+HA  +   F  +    +SL+++Y+K G   +AR +FD +  +++VSW +M+  Y +
Sbjct: 137 TQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTK 196

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            G  + A EIF   P RN+  WT+++SG V +    +A   F  M+  G+ + D + L S
Sbjct: 197 CGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKL-DNVALVS 255

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
            + ACA+  VL+ GK IH  +     E    +   ++DMYAKC D+  A ++F +M  K 
Sbjct: 256 TLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKG 315

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           V  WT++I G A HG+  E L  + +M +AGV+PN++TF G++ ACSH GLV + + LF+
Sbjct: 316 VSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFE 375

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
           SM   +G  PS++HY C++DLL R+G L EAE LI+ MP +P+   W ALL+AC  H N 
Sbjct: 376 SMERIHGFKPSIEHYGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNL 435

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           E+G ++   L+ + P     YI L++++A+A  W   ++VR+ M    V K PG S I  
Sbjct: 436 ELGKQIGKILIQVDPGHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISV 495

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
              +H F AG+ SHP   EI  +L ++   ++  GY P    +L D+E KEKE  +  HS
Sbjct: 496 NGTAHEFLAGDESHPQIKEIDHMLEQIVERLREEGYKPKLGDLLLDLEDKEKETAIHHHS 555

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           E+LAV +GL+ + PG  +R+VKNLRVC DCH V+K+IS++  REI++RD TR+H FKDG 
Sbjct: 556 EKLAVTFGLISTKPGMTIRIVKNLRVCEDCHTVIKLISKVYAREILMRDRTRFHLFKDGN 615

Query: 604 CSCNDFW 610
           C+C D+W
Sbjct: 616 CTCGDYW 622


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 215/588 (36%), Positives = 333/588 (56%), Gaps = 32/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LH Q++K  LH    +  TL++ Y  C  ++ A  L E M  R+ V W S+++ Y + 
Sbjct: 99  KVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKN 158

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           + P + + ++  M   D   PD    A+LV AC  L    +G ++H+           V+
Sbjct: 159 HCPNEALLLYKKMEE-DGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVL 217

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            S+LV+MYAKC                               G  K A ++F+Q   +++
Sbjct: 218 GSALVNMYAKC-------------------------------GDLKTARQVFDQLSDKDV 246

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
           + W+AL+ G V++    +A   F E+        + + + +++ ACA    LE G+ +H 
Sbjct: 247 YAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHD 306

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +        + ++N+++DM++KC DI AAK IF  M  KD++SW S++ G A HG   E
Sbjct: 307 YITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGRE 366

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            LA +  M +  ++P+E+TF+G++ ACSH GLV +G+KLF  +   YG+    +HY C++
Sbjct: 367 ALAQFHLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMV 426

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G L EA   I+ MP +PD   W ++L AC+ + N E+G   A  LL L+P +  
Sbjct: 427 DLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARCLLELEPTNDG 486

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            YILLSN+YA   MW  V KVR+LM+   ++K PG S +     +H F AG+ SHP   E
Sbjct: 487 VYILLSNIYARRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAE 546

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I  +L ++  ++K  GYV DTS VL +++  +KE  +  HSE+LA+ YGLLKS  G  + 
Sbjct: 547 ISIMLRQVREKLKLVGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIV 606

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++KNLRVC DCH ++K++S+I +R+I +RD  R+HHFKDG CSC D+W
Sbjct: 607 ILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 70/237 (29%), Positives = 119/237 (50%), Gaps = 5/237 (2%)

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F    V ++  W +++   V S     A  S+ EM     ++ D     S++  CA
Sbjct: 31  AYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
                ++GK +HG V+     S L+I   +++MYA C D+ +A+ +F RM  ++ V WTS
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-D 368
           +I G  ++    E L LY +M   G  P+EVT   L+ AC+ +  +G G KL   + E D
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA-CKHHRNTE 424
             I   L   + L+++ ++ G L  A  +   +  + D   W+AL+    K++R+TE
Sbjct: 211 MKICAVLG--SALVNMYAKCGDLKTARQVFDQLS-DKDVYAWSALIFGYVKNNRSTE 264



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 13/193 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CA+     T + +H  I +        L N+LID + KC  +  A  + + M  +D 
Sbjct: 289 ISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDL 348

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK---- 125
           +SW S++       L ++ ++ F  M   D LQPD   F  ++ AC   G  + GK    
Sbjct: 349 ISWNSMVNGLALHGLGREALAQFHLMQTTD-LQPDEITFIGVLTACSHAGLVQEGKKLFY 407

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARS 184
           ++ A + +    +       +VD+  + GL   AR     + L+ +   W +ML A    
Sbjct: 408 EIEALYGVRLKSEH---YGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGAC--- 461

Query: 185 GRKKDAMEIFEQA 197
            R  + +E+ E+A
Sbjct: 462 -RVYNNLELGEEA 473


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/569 (37%), Positives = 328/569 (57%), Gaps = 35/569 (6%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           LI  Y     ++ A  + +E+P +D VSW +I++ Y      ++ + +F  M+  + ++P
Sbjct: 175 LITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTN-VKP 233

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D     ++V AC   G+ +LG+QVH+         +  + ++L+D+Y+KCG    A  +F
Sbjct: 234 DESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLF 293

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
             +  K+ +SW  M+  Y      K+A+ +F+                            
Sbjct: 294 QGLSNKDVISWNTMIGGYTHLNLYKEALLLFQ---------------------------- 325

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL--GYESCLFISNAIVD 281
              EM R G +  D  +LS I+ ACA    ++ G+ IH  +     G  +   +  +++D
Sbjct: 326 ---EMLRSGENPNDVTMLS-ILPACAQLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLID 381

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MYAKC DI AA  +F  M  + + +  ++I G A HG+A     ++  M   G++P+++T
Sbjct: 382 MYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDIT 441

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           FVGL+ ACSH G++  GR++F+SM ++Y ITP L+HY C++DLL   G   EAE +I  M
Sbjct: 442 FVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTM 501

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
             EPD   W +LL ACK H N E+G   A  L+ ++PE+P SY+LLSN+YA+A  W  V+
Sbjct: 502 TMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVA 561

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
            +R L++   +KK PG S IE     H F  G+  HP   EI+ +L E++  ++  G+VP
Sbjct: 562 NIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEVLLEEAGFVP 621

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           DTS VL +ME++ K+  L  HSE+LA+A+GL+ + PGT L +VKNLRVC +CH   K+IS
Sbjct: 622 DTSEVLQEMEEEFKQGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLIS 681

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I KREI+ RD TR+HHF+DG CSCND+W
Sbjct: 682 KIYKREIIARDRTRFHHFRDGVCSCNDYW 710



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 124/447 (27%), Positives = 227/447 (50%), Gaps = 40/447 (8%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLID---AYGKCDLVQYAHHLLEEMPQRDHVSWASILT 77
           +++ +HAQ+IK GLH      + L++        D + YA  + E + + + + W ++  
Sbjct: 17  SLRIIHAQMIKTGLHNTNYALSRLLEFCILSPNFDGLPYAISVFETIQEPNLLIWNTMFR 76

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
            +  ++ P   I ++  M++L  L P+ + F  L+K+C  L  ++ G+Q+H   +   + 
Sbjct: 77  GHALSSDPVSAIKLYVCMISLG-LLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYE 135

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D  V +SL+ MY K G   +A  VFD    ++ VS+TA+++ YA  G  + A ++F++ 
Sbjct: 136 LDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEI 195

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           PV+++  W A++SG   + N  +A   F EM +  V   D   + ++V ACA    ++LG
Sbjct: 196 PVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVK-PDESTMVTVVSACAQSGSIQLG 254

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           +Q+H  +   G  S L I NA++D+Y+KC ++  A  +F  +  KDV+SW ++I G    
Sbjct: 255 RQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHL 314

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY-GITPSLQ 376
              +E L L+ EM+ +G  PN+VT + ++ AC+ +G +  GR +   + +   G+T +  
Sbjct: 315 NLYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFGRWIHVYIDKRIKGVTNASS 374

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAM----------------------------------P 402
             T L+D+ ++ G ++ A  +  +M                                   
Sbjct: 375 LRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKNG 434

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRV 429
            EPD+ T+  LLSAC H    ++G R+
Sbjct: 435 IEPDDITFVGLLSACSHSGMLDLGRRI 461



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 149/349 (42%), Gaps = 50/349 (14%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA+       + +H+ I   GL     + N LID Y KC  V+ A  L + +  +D +SW
Sbjct: 245 CAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISW 304

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF- 131
            +++  Y   NL ++ + +F  ML   +  P+     S++ AC  LGA   G+ +H    
Sbjct: 305 NTMIGGYTHLNLYKEALLLFQEMLRSGE-NPNDVTMLSILPACAQLGAIDFGRWIHVYID 363

Query: 132 -VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
             +    +   +++SL+DMYAKCG    A  VF+S+  +   +  AM+  +A  GR   A
Sbjct: 364 KRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAA 423

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
            +IF +                               MR+ G++  D +    ++ AC++
Sbjct: 424 FDIFSR-------------------------------MRKNGIE-PDDITFVGLLSACSH 451

Query: 251 FAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK- 302
             +L+LG++I       + +   L +  C+      +D+         A+++   M  + 
Sbjct: 452 SGMLDLGRRIFRSMTQNYKITPKLEHYGCM------IDLLGHLGLFKEAEEMINTMTMEP 505

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK-PNEVTFVGLIYACS 350
           D V W S++     HG  E   +   +++    + P     +  IYA +
Sbjct: 506 DGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYATA 554


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 194/436 (44%), Positives = 289/436 (66%), Gaps = 1/436 (0%)

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
            A++  YA+ G    A ++FE+   +++  WT+LV+G V + +  +A   F EMR  G+ 
Sbjct: 6   NALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIH 65

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
             D +V+++++ ACA   VLE GKQ+H   +  G  S L + N++V MYAKC  I  A  
Sbjct: 66  -PDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANK 124

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL 354
           +F  M  +DV++WT++IVG AQ+G+  E+L  Y++M+++GVKP+ +TF+GL++ACSH GL
Sbjct: 125 VFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACSHAGL 184

Query: 355 VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           V  GR  F+SM E YGI P  +HY C++DLL RSG L EA+ L+  M  +PD   W ALL
Sbjct: 185 VEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALL 244

Query: 415 SACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKK 474
           +AC+ H N E+G R AN+L  L+P++   Y+LLSN+Y++A  W+  +K R+LM +  V K
Sbjct: 245 AACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEEAAKTRRLMKLRGVSK 304

Query: 475 EPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE 534
           EPG S+IE     H F + + SHP   EI+  + E+   +K  GYVPD +  LHDM+++ 
Sbjct: 305 EPGCSWIEMSSKVHRFMSEDRSHPRTAEIYSKVDEIMILIKEAGYVPDMNFALHDMDEEG 364

Query: 535 KERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDAT 594
           KE  L +HSE+LAVA+GLL   PG  +R+ KNLR+CGDCH  MK +S +  R +++RD+ 
Sbjct: 365 KELGLAYHSEKLAVAFGLLTMPPGAPIRIFKNLRICGDCHTAMKYVSGVFHRHVILRDSN 424

Query: 595 RYHHFKDGKCSCNDFW 610
            +HHF++G CSC+D+W
Sbjct: 425 CFHHFREGACSCSDYW 440



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 137/288 (47%), Gaps = 47/288 (16%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+D Y K     YA  + E+M  +D +SW S++T        ++ + +F  M  +  +
Sbjct: 6   NALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMG-I 64

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            PD  V A+++ AC  L     GKQVHA F+ S       V +SLV MYAKCG   +A  
Sbjct: 65  HPDQIVIAAVLSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANK 124

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VFDS+++++ ++WTA++  YA++GR ++++  +             + SG+         
Sbjct: 125 VFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNB----------MIASGVKPD------ 168

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK-------QIHGLVIALGYESCLF 274
           F +FI                 ++ AC++  ++E G+       +++G+     + +C+ 
Sbjct: 169 FITFI----------------GLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYACM- 211

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAE 321
                +D+  +   ++ AK++  +M  + D   W +++     HG  E
Sbjct: 212 -----IDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVE 254



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 56/206 (27%), Positives = 107/206 (51%), Gaps = 6/206 (2%)

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
            ++NA+VDMYAK      A D+F +M  KDV+SWTS++ G   +G  EE L L+ EM   
Sbjct: 3   LVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIM 62

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
           G+ P+++    ++ AC+ + ++  G+++  + ++  G+  SL     L+ + ++ G +++
Sbjct: 63  GIHPDQIVIAAVLSACAELTVLEFGKQVHANFLKS-GLGSSLSVDNSLVSMYAKCGCIED 121

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS--LKPEDPSSYILLSNVY 451
           A  +  +M  + D  TW AL+     +          N +++  +KP D  ++I L    
Sbjct: 122 ANKVFDSMEIQ-DVITWTALIVGYAQNGRGRESLNFYNBMIASGVKP-DFITFIGLLFAC 179

Query: 452 ASAAMWQH-VSKVRKLMSVMEVKKEP 476
           + A + +H  S  + +  V  +K  P
Sbjct: 180 SHAGLVEHGRSYFQSMEEVYGIKPGP 205



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 94/198 (47%), Gaps = 13/198 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA   +    K +HA  +K GL     + N+L+  Y KC  ++ A+ + + M  +D 
Sbjct: 75  LSACAELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDV 134

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK---- 125
           ++W +++  Y Q    +++++ ++ M+A   ++PD   F  L+ AC   G    G+    
Sbjct: 135 ITWTALIVGYAQNGRGRESLNFYNBMIA-SGVKPDFITFIGLLFACSHAGLVEHGRSYFQ 193

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARS 184
            +   + + P  +     + ++D+  + G    A+ + + + ++ ++  W A+L+A    
Sbjct: 194 SMEEVYGIKPGPEH---YACMIDLLGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVH 250

Query: 185 GR----KKDAMEIFEQAP 198
           G     ++ A  +FE  P
Sbjct: 251 GNVELGERAANNLFELEP 268


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/628 (35%), Positives = 349/628 (55%), Gaps = 66/628 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHH---------- 59
            + CA+ + A   K +HAQI+K GL     +  +LI  Y +  +V+ AH           
Sbjct: 85  FKSCAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDV 144

Query: 60  ---------------------LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                                + +E+P +D VSW ++++ Y +    ++ + +F+ M+ +
Sbjct: 145 VSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKM 204

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           D ++PD    A+++  C   G   LG+Q+H+      F  +  + ++L+D+Y+KCG    
Sbjct: 205 D-VKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEMER 263

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A                                 +FE    +++  W  L+ G     + 
Sbjct: 264 AHG-------------------------------LFEGLQYKDVISWNTLIGGYAYINHH 292

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL--GYESCLFIS 276
            +A   F EM + G +  + + + SI+ ACA+   +++G+ IH  +     G  +   + 
Sbjct: 293 KEALLVFQEMLKLG-ETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQ 351

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
            +++DMYAKC +I AA  +F  +  K + S  ++I G A HG+A+    L   M   G++
Sbjct: 352 TSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIE 411

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
           P+++TFVGL+ ACSH GL   GRK+FKSM  DY I P L+HY C++DLL RSG   EAE 
Sbjct: 412 PDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIEPKLEHYGCMIDLLGRSGLFKEAEE 471

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           LI +M  EPD   W +LL ACK H+N E+G  +A  L+ ++P++P SY+LLSN+YA++A 
Sbjct: 472 LINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQKLMKIEPKNPGSYVLLSNIYATSAR 531

Query: 457 WQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKR 516
           W  V++VR L++   +KK PG S IE     H F  G+  HP   EI+++L E+D+ +  
Sbjct: 532 WDDVARVRTLLNDKGLKKVPGCSSIEIDSMVHEFLIGDKFHPQNKEIYKMLEEIDSLLAE 591

Query: 517 RGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIV 576
            G+V DTS VL +ME++ KE  L +HSE+LA+A+GL+ + PGT LR+VKNLRVC +CH  
Sbjct: 592 TGFVSDTSEVLQEMEEELKEGALSYHSEKLAIAFGLISTKPGTKLRIVKNLRVCRNCHEA 651

Query: 577 MKMISRITKREIVVRDATRYHHFKDGKC 604
            K+IS+I KREI+ RD +R+HHFKDG C
Sbjct: 652 TKLISKIYKREIIARDRSRFHHFKDGMC 679



 Score =  202 bits (514), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 124/441 (28%), Positives = 227/441 (51%), Gaps = 46/441 (10%)

Query: 30  IKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL------LEEMPQRDHVSWASILTAYNQAN 83
           IK+GLH      + L+D    C L  Y H L       + + + + +SW +++  +  ++
Sbjct: 1   IKIGLHNTNYALSKLLDF---CILTPYFHGLPYAISVFKSIQEPNQLSWNTMIRGHALSS 57

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
            P   ++++  M++L  L P+ + F  L K+C    A + GKQ+HA  +      D  V 
Sbjct: 58  DPISALNLYVYMISLG-LSPNSYTFPFLFKSCAKSKAAQEGKQIHAQILKYGLTVDLHVH 116

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           +SL+ MYA+ G+  +A  VFD+   ++ VS+TAM++ YA  G    A ++F++ P++++ 
Sbjct: 117 TSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVV 176

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            W A++SG  +     +A   F EM +  V   D   +++++  C +   +ELG+QIH  
Sbjct: 177 SWNAMISGYAEIGRYKEALELFNEMMKMDVK-PDESTMATVLSTCTHSGNVELGRQIHSW 235

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           +   G+ S L + NA++D+Y+KC ++  A  +F  ++ KDV+SW ++I G A     +E 
Sbjct: 236 IDNHGFGSNLKLVNALIDLYSKCGEMERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEA 295

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY-GITPSLQHYTCLL 382
           L ++ EM+  G  PN+VT + ++ AC+H+G +  GR +   + +   GI  +    T L+
Sbjct: 296 LLVFQEMLKLGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLI 355

Query: 383 DLLSRSGHLDEAENLI-----------KAMPF-----------------------EPDEP 408
           D+ ++ G+++ A  +             AM F                       EPD+ 
Sbjct: 356 DMYAKCGNIEAANQVFDTILNKSLSSCNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDI 415

Query: 409 TWAALLSACKHHRNTEMGTRV 429
           T+  LLSAC H   +++G ++
Sbjct: 416 TFVGLLSACSHAGLSDLGRKI 436


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 228/611 (37%), Positives = 371/611 (60%), Gaps = 43/611 (7%)

Query: 4   SHYLHRLRVCAR-HQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
           S Y   +++CA   Q+AL  + LH+ ++K G H  G +   ++DAY KC  +  A ++  
Sbjct: 303 STYSTVIKLCANLKQLALA-RQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFL 361

Query: 63  EMP-QRDHVSWASILTAYNQ-ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
            MP  ++ VSW +++    Q A++P    ++FS M   D ++P+ F +++++ A   +  
Sbjct: 362 LMPGSQNVVSWTAMIGGCIQNADIPLAA-ALFSRMRE-DNVKPNEFTYSTVLTASIPI-- 417

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
             L  Q+HA           ++K++            +A +V            TA+L++
Sbjct: 418 --LLPQIHA----------QIIKTNY----------QHAPSV-----------GTALLAS 444

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           Y++ G  ++A+ IF+    +++  W+A++S   Q+ +   A   FI+M  +G+   +   
Sbjct: 445 YSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMSMQGMK-PNEFT 503

Query: 241 LSSIVGACAN-FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
           +SS + ACA+  A ++ G+Q H + I   Y+  + + +A+V MYA+   I +A+ +F R 
Sbjct: 504 ISSAIDACASPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGSIDSARIVFERQ 563

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
             +D+VSW S+I G AQHG ++E L  + +M + G++ +  TF+ +I  C+H GLV +G+
Sbjct: 564 TDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQ 623

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           + F SM+ D+ I+P+++HY+C++DL SR+G LDE  NLI+ MPF      W  LL AC+ 
Sbjct: 624 QYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAMVWRTLLGACRV 683

Query: 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
           H+N E+G   A  LL L+P+D ++Y+LLSN+YA+A  W+   +VRKLM   +VKKE G S
Sbjct: 684 HKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMDSKKVKKEAGCS 743

Query: 480 YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL 539
           +I+     H F A + SHPL ++I+  L  +   +K+ GY P+TS VLHD+ +++KE  L
Sbjct: 744 WIQIKNKVHSFIACDKSHPLSEQIYAKLKAMTTRLKQEGYCPNTSVVLHDIAEEQKETML 803

Query: 540 FWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
             HSERLA+A+GL+ + P T L++VKNLRVCGDCH+VMKM+S I  REI++RD +R+HHF
Sbjct: 804 VMHSERLALAFGLIATPPRTPLQIVKNLRVCGDCHMVMKMVSLIEDREIIMRDCSRFHHF 863

Query: 600 KDGKCSCNDFW 610
             G CSC DFW
Sbjct: 864 NAGACSCGDFW 874



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 141/507 (27%), Positives = 240/507 (47%), Gaps = 50/507 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYG-PLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L+VC      ++ + LH   +K G  +    +   L+D Y KC  V+    + E MP+R+
Sbjct: 106 LKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVEDGRVVFEGMPKRN 165

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            V+W S+LT Y Q       +++F  M A + + P+ F F S++ A  S GA  LG++VH
Sbjct: 166 VVTWTSLLTGYVQGRACSDVMALFFRMRA-EGVWPNPFTFTSVLSAVASQGAVDLGRRVH 224

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           A  V         V +SL++MY+KCGL   A+AVF  ++ ++ VSW  +++    +  + 
Sbjct: 225 AQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQL 284

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A+++F  +         A ++ L QS                          S+++  C
Sbjct: 285 EALQLFHDS--------RASMAKLSQS------------------------TYSTVIKLC 312

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSW 307
           AN   L L +Q+H  V+  G+ S   +  AI+D Y+KC ++  A +IF  M   ++VVSW
Sbjct: 313 ANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSW 372

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           T++I G  Q+       AL+  M    VKPNE T+  ++ A   + L     ++ K+   
Sbjct: 373 TAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTASIPILLPQIHAQIIKT--- 429

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
           +Y   PS+   T LL   S+ G+ +EA ++ K M    D   W+A+LS      + +  T
Sbjct: 430 NYQHAPSVG--TALLASYSKLGNTEEALSIFK-MIDHKDVVAWSAMLSCYSQAGDCDGAT 486

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY---IEFG 484
            V    +S++   P+ + + S + A A+    + + R+  ++  +K    Y Y   I  G
Sbjct: 487 NVFIK-MSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAI-SIK----YRYQDAICVG 540

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELD 511
                 YA + S      +FE  T+ D
Sbjct: 541 SALVTMYARKGSIDSARIVFERQTDRD 567



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 158/314 (50%), Gaps = 20/314 (6%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           DHFV    V  CG +    + + +  C ++     D V    L  +  KCG        F
Sbjct: 86  DHFVD---VHRCGRVQGAAVSRVLKVCGLIP----DRVSGEQLHCLCVKCG--------F 130

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           D  ++      TA++  Y + G  +D   +FE  P RN+  WT+L++G VQ R   D   
Sbjct: 131 DRAEVGVG---TALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMA 187

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            F  MR EGV   +P   +S++ A A+   ++LG+++H   +  G  S +F+ N++++MY
Sbjct: 188 LFFRMRAEGV-WPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMY 246

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           +KC  +  AK +F +M  +D+VSW +++ G   +    E L L+ +  ++  K ++ T+ 
Sbjct: 247 SKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYS 306

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            +I  C+++  +   R+L   +++ +G        T ++D  S+ G LD+A N+   MP 
Sbjct: 307 TVIKLCANLKQLALARQLHSCVLK-HGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPG 365

Query: 404 EPDEPTWAALLSAC 417
             +  +W A++  C
Sbjct: 366 SQNVVSWTAMIGGC 379



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 186/401 (46%), Gaps = 43/401 (10%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HAQ +K G      + N+LI+ Y KC LV+ A  +  +M  RD VSW +++      
Sbjct: 221 RRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLN 280

Query: 83  NLPQKTISIF-STMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
               + + +F  +  ++ KL      +++++K C +L    L +Q+H+C +   F  D  
Sbjct: 281 EHQLEALQLFHDSRASMAKLSQS--TYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGN 338

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIK-LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           V ++++D Y+KCG  ++A  +F  +   +N VSWTAM                       
Sbjct: 339 VMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAM----------------------- 375

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
                   + G +Q+ +   A   F  MR + V   +    S+++ A    ++  L  QI
Sbjct: 376 --------IGGCIQNADIPLAAALFSRMREDNVK-PNEFTYSTVLTA----SIPILLPQI 422

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H  +I   Y+    +  A++  Y+K  +   A  IF  +  KDVV+W++++   +Q G  
Sbjct: 423 HAQIIKTNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDC 482

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYAC-SHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
           +    ++ +M   G+KPNE T    I AC S    + +GR+ F ++   Y    ++   +
Sbjct: 483 DGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQ-FHAISIKYRYQDAICVGS 541

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            L+ + +R G +D A  ++     + D  +W +++S    H
Sbjct: 542 ALVTMYARKGSIDSAR-IVFERQTDRDLVSWNSMISGYAQH 581


>gi|297798134|ref|XP_002866951.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312787|gb|EFH43210.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 630

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/593 (36%), Positives = 348/593 (58%), Gaps = 9/593 (1%)

Query: 22  VKTLHAQIIK--LGLHQYGPLPN-TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           V  +HA I++  L +H   P+ N  L  AY     ++++  L  +    D   + + +  
Sbjct: 43  VLQIHAAILRHNLLIHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINT 102

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
            +   L  +   ++  +L+  ++ P+ F F+S++K+C    +T+ GK +H   +      
Sbjct: 103 ASINGLKDQAFLLYVQLLS-SQINPNEFTFSSILKSC----STKSGKLIHTHVLKFGLGL 157

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  V + LVD+YAK G   +A+ VFD +  ++ VS TAM++ YA+ G  + A  +F++  
Sbjct: 158 DPYVATGLVDIYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDRMC 217

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            R++  W  ++ G  Q     DA   F ++  +G    D + + + + AC+    LE G+
Sbjct: 218 ERDIVSWNVMIDGYSQHGFPSDALMLFQKLLADGKPKPDEITVVAALSACSQIGALETGR 277

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
            IH  V +      + +  A++DMY+KC  +  A  +F    RKD+V+W ++I G A HG
Sbjct: 278 WIHVFVNSSRIRLNVKVCTALIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMITGYAMHG 337

Query: 319 QAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
            +++ L L+DEM    G++P ++TF+G + AC+H GLV +G ++F+SM ++YGI P ++H
Sbjct: 338 YSQDALRLFDEMQGITGLQPTDITFIGTLQACAHAGLVNEGIQIFESMGQEYGIKPKIEH 397

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
           Y CL+ LL R+G L  A  +IK M  E D   W+++L +CK H    +G  +A +L+   
Sbjct: 398 YGCLVSLLGRAGQLKRAYEIIKNMNMEADSVLWSSVLGSCKLHGEFMLGKEIAEYLIGQN 457

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
             +   Y+LLSN+YA    ++ V+KVR LM    + KEPG S IE     H F AG+  H
Sbjct: 458 ISNSGIYVLLSNIYALVGDYEGVAKVRNLMKEKGIVKEPGISTIEIDNKVHEFRAGDREH 517

Query: 498 PLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVP 557
               EI+ +L ++   +K  GYVP+T++VLHD+E+ EKER L  HSERLA+AYGL+ + P
Sbjct: 518 LKSKEIYTMLRKMSERIKSHGYVPNTNTVLHDLEETEKERSLQVHSERLAIAYGLISTKP 577

Query: 558 GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           G+ L++ KNLRVC DCH V K+IS+IT R+IV+RD  R+HHF DG CSC+DFW
Sbjct: 578 GSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFSDGSCSCDDFW 630


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/589 (36%), Positives = 335/589 (56%), Gaps = 34/589 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYA-HHLLEEMPQRDHVSWASILTAYNQ 81
           + +H    K+ L     + N LI  YGKC LV+ A   + + M  +   SW ++L  Y Q
Sbjct: 228 QIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQ 287

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
            + P+K + ++  M     L PD F   SL+ AC  + +   G+++H   + +    D  
Sbjct: 288 NSDPRKALDLYLQMTD-SGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPF 346

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           +  SL+ +Y  CG P  A+ +FD ++                                R+
Sbjct: 347 IGISLLSLYICCGKPFAAQVLFDGMEH-------------------------------RS 375

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           L  W  +++G  Q+    +A   F +M  +G+   + + +  + GAC+  + L LGK++H
Sbjct: 376 LVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYE-IAIMCVCGACSQLSALRLGKELH 434

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
              +       +F+S++I+DMYAK   I  ++ IF R+R KDV SW  II G   HG+ +
Sbjct: 435 CFALKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGK 494

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L L+++M+  G+KP++ TF G++ ACSH GLV  G + F  M+  + I P L+HYTC+
Sbjct: 495 EALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCV 554

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +D+L R+G +D+A  LI+ MP +PD   W++LLS+C+ H N  +G +VAN LL L+PE P
Sbjct: 555 VDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKP 614

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            +Y+L+SN++A +  W  V +VR  M  + ++K+ G S+IE G   H F  G+   P  +
Sbjct: 615 ENYVLISNLFAGSGKWDDVRRVRGRMKDIGLQKDAGCSWIEVGGKVHNFLIGDEMLPELE 674

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           E+ E    L+ ++   GY PDT SVLHD+E+++K   L  HSE+LA+++GLL +  G  +
Sbjct: 675 EVRETWRRLEVKISSIGYTPDTGSVLHDLEEEDKIGILRGHSEKLAISFGLLNTAKGLPV 734

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           RV KNLR+CGDCH   K IS++  R+IVVRD  R+HHF+DG CSC D+W
Sbjct: 735 RVYKNLRICGDCHNAAKFISKVVNRDIVVRDNKRFHHFRDGICSCGDYW 783



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 121/447 (27%), Positives = 189/447 (42%), Gaps = 81/447 (18%)

Query: 111 LVKACGSLGATRLGKQVHACFVLSP-FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           L++ACG      +G+++H     S  FC+D V+ + ++ MY+ CG P+++R VFD ++ K
Sbjct: 111 LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 170

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
           N   W A++SAY R+   +DAM IF +                           S  E +
Sbjct: 171 NLFQWNAIVSAYTRNELFEDAMSIFSE-------------------------LISVTEHK 205

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289
                  D   L  ++ ACA    L LG+ IHG+   +   S +F+ NA++ MY KC  +
Sbjct: 206 ------PDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLV 259

Query: 290 -IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
             A K +F  M  K V SW +++ G AQ+    + L LY +M  +G+ P+  T   L+ A
Sbjct: 260 EEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLA 319

Query: 349 CS-----HVGLVGKGRKLFKSMIEDYGITPS-LQHYTC---------LLDLL-------- 385
           CS     H G    G  L   +  D  I  S L  Y C         L D +        
Sbjct: 320 CSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSW 379

Query: 386 -------SRSGHLDEAENLIKAMPFEPDEPTWAALL---SACKHHRNTEMGTRVANHLLS 435
                  S++G  DEA NL + M  +  +P   A++    AC       +G  +  H  +
Sbjct: 380 NVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKEL--HCFA 437

Query: 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGET 495
           LK        + S++    A    +   +++   +  K    ++ I  G G H    G  
Sbjct: 438 LKAHLTEDIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIH----GRG 493

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPD 522
              L  E+FE       +M R G  PD
Sbjct: 494 KEAL--ELFE-------KMLRLGLKPD 511


>gi|334185551|ref|NP_001189950.1| uncharacterized protein [Arabidopsis thaliana]
 gi|75274240|sp|Q9LUJ2.1|PP249_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g22690
 gi|9279687|dbj|BAB01244.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643145|gb|AEE76666.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 842

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 221/602 (36%), Positives = 345/602 (57%), Gaps = 3/602 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CA+ +   T + ++A I   G+     + + L+D Y KC+ +  A  L +E    + 
Sbjct: 243 ISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNL 302

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
               ++ + Y +  L ++ + +F+ M+    ++PD     S + +C  L     GK  H 
Sbjct: 303 DLCNAMASNYVRQGLTREALGVFNLMMD-SGVRPDRISMLSAISSCSQLRNILWGKSCHG 361

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + + F   D + ++L+DMY KC   + A  +FD +  K  V+W ++++ Y  +G    
Sbjct: 362 YVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDA 421

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR-REGVDIVDPLVLSSIVGAC 248
           A E FE  P +N+  W  ++SGLVQ     +A   F  M+ +EGV+  D + + SI  AC
Sbjct: 422 AWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVN-ADGVTMMSIASAC 480

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
            +   L+L K I+  +   G +  + +   +VDM+++C D  +A  IF  +  +DV +WT
Sbjct: 481 GHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWT 540

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           + I   A  G AE  + L+D+M+  G+KP+ V FVG + ACSH GLV +G+++F SM++ 
Sbjct: 541 AAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKL 600

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           +G++P   HY C++DLL R+G L+EA  LI+ MP EP++  W +LL+AC+   N EM   
Sbjct: 601 HGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAY 660

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            A  +  L PE   SY+LLSNVYASA  W  ++KVR  M    ++K PG S I+    +H
Sbjct: 661 AAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTH 720

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F +G+ SHP    I  +L E+       G+VPD S+VL D+++KEK   L  HSE+LA+
Sbjct: 721 EFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAM 780

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           AYGL+ S  GT +R+VKNLRVC DCH   K  S++  REI++RD  R+H+ + GKCSC D
Sbjct: 781 AYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGD 840

Query: 609 FW 610
           FW
Sbjct: 841 FW 842



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 120/464 (25%), Positives = 207/464 (44%), Gaps = 68/464 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA+ +       +H  I+K+G  +   + N+L+  Y +C  +  A  + +EM +R+ 
Sbjct: 141 LSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNV 200

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S++  Y + +  +  + +F  M+  +++ P+      ++ AC  L     G++V+A
Sbjct: 201 VSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYA 260

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               S    +D++ S+LVDMY KC   + A+ +FD     N     AM S Y R G  ++
Sbjct: 261 FIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTRE 320

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +F      NL                         M   GV   D + + S + +C+
Sbjct: 321 ALGVF------NL-------------------------MMDSGVR-PDRISMLSAISSCS 348

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               +  GK  HG V+  G+ES   I NA++DMY KC     A  IF RM  K VV+W S
Sbjct: 349 QLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNS 408

Query: 310 IIVGTAQHGQAE------ETL------------------ALYDEMVSA--------GVKP 337
           I+ G  ++G+ +      ET+                  +L++E +          GV  
Sbjct: 409 IVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNA 468

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           + VT + +  AC H+G +   + ++   IE  GI   ++  T L+D+ SR G  + A ++
Sbjct: 469 DGVTMMSIASACGHLGALDLAKWIYY-YIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSI 527

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPE 439
             ++    D   W A + A     N E    + + ++   LKP+
Sbjct: 528 FNSLT-NRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPD 570



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 133/281 (47%), Gaps = 32/281 (11%)

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
           + S++  Y  + L  + I +F  M+    + PD + F   + AC    A   G Q+H   
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMN-SGISPDKYTFPFGLSACAKSRAKGNGIQIHGLI 160

Query: 132 VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
           V   +  D  V++SLV  YA+CG  ++AR VFD +  +N VSWT+M+  YAR    KDA+
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAV 220

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
           ++F                              F  +R E V   + + +  ++ ACA  
Sbjct: 221 DLF------------------------------FRMVRDEEV-TPNSVTMVCVISACAKL 249

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
             LE G++++  +   G E    + +A+VDMY KC+ I  AK +F      ++    ++ 
Sbjct: 250 EDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMA 309

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
               + G   E L +++ M+ +GV+P+ ++ +  I +CS +
Sbjct: 310 SNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL 350



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 111/211 (52%), Gaps = 4/211 (1%)

Query: 190 AMEIFEQA-PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           A E+FE +      F++ +L+ G   S    +A   F+ M   G+   D       + AC
Sbjct: 86  AKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGIS-PDKYTFPFGLSAC 144

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A       G QIHGL++ +GY   LF+ N++V  YA+C ++ +A+ +F  M  ++VVSWT
Sbjct: 145 AKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWT 204

Query: 309 SIIVGTAQHGQAEETLALYDEMV-SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           S+I G A+   A++ + L+  MV    V PN VT V +I AC+ +  +  G K++ + I 
Sbjct: 205 SMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY-AFIR 263

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           + GI  +    + L+D+  +   +D A+ L 
Sbjct: 264 NSGIEVNDLMVSALVDMYMKCNAIDVAKRLF 294



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 122/262 (46%), Gaps = 42/262 (16%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC--------------- 51
           L  +  C++ +  L  K+ H  +++ G   +  + N LID Y KC               
Sbjct: 341 LSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSN 400

Query: 52  ----------------DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTM 95
                             V  A    E MP+++ VSW +I++   Q +L ++ I +F +M
Sbjct: 401 KTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSM 460

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
            + + +  D     S+  ACG LGA  L K ++     +    D  + ++LVDM+++CG 
Sbjct: 461 QSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGD 520

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL-----FLWTALVS 210
           P +A ++F+S+  ++  +WTA + A A +G  + A+E+F+    + L         AL +
Sbjct: 521 PESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTA 580

Query: 211 ----GLVQSRNEIDAFYSFIEM 228
               GLVQ   EI  FYS +++
Sbjct: 581 CSHGGLVQQGKEI--FYSMLKL 600


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 217/585 (37%), Positives = 333/585 (56%), Gaps = 34/585 (5%)

Query: 26  HAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLP 85
           HA  I+ GL +   +   ++DAY KC  ++ A  + + MP ++ VSW +++  Y Q    
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 86  QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS 145
           ++ +++F+ M+       D  V A+L +ACG LG    G +VH   V      +  V ++
Sbjct: 244 REALALFNRMVEEGVDVTDVSVLAAL-QACGELGCLDEGMRVHELLVRIGLDSNVSVMNA 302

Query: 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLW 205
           L+ MY+KC   + A  VFD +  +  VS                               W
Sbjct: 303 LITMYSKCKRVDLASHVFDELDRRTQVS-------------------------------W 331

Query: 206 TALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265
            A++ G  Q+    DA   F  M+ E V   D   L S++ A A+ +     + IHG  I
Sbjct: 332 NAMILGCAQNGCSEDAVRLFTRMQLENVK-PDSFTLVSVIPALADISDPLQARWIHGYSI 390

Query: 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA 325
            L  +  +++  A++DMYAKC  +  A+ +F   R + V++W ++I G   HG  +  + 
Sbjct: 391 RLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVE 450

Query: 326 LYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385
           L++EM S G+ PNE TF+ ++ ACSH GLV +GR+ F SM EDYG+ P ++HY  ++DLL
Sbjct: 451 LFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLL 510

Query: 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYI 445
            R+G LDEA   I+ MP +P    + A+L ACK H+N E+    A  +  L P++   ++
Sbjct: 511 GRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHV 570

Query: 446 LLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFE 505
           LL+N+YA+A+MW+ V++VR  M    ++K PG+S I+     H FY+G T+H    EI+ 
Sbjct: 571 LLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYS 630

Query: 506 LLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVK 565
            L +L  E+K  GYVPDT S+ HD+E   K + L  HSE+LA+A+GL+++ PGT +++ K
Sbjct: 631 RLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKK 689

Query: 566 NLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           NLRVC DCH   K+IS +T REI++RD  R+HHFKDGKCSC D+W
Sbjct: 690 NLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 196/442 (44%), Gaps = 55/442 (12%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
            F SL+K C + G    G+ VHA         + +  ++L +MYAKC  P          
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCRRP---------- 110

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
                                 DA  +F++ PVR+   W ALV+G  ++     A    +
Sbjct: 111 ---------------------ADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVV 149

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            M+ E  +  D + L S++ ACAN   L   ++ H   I  G E  + ++ AI+D Y KC
Sbjct: 150 RMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKC 209

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
            DI AA+ +F  M  K+ VSW ++I G AQ+G + E LAL++ MV  GV   +V+ +  +
Sbjct: 210 GDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAAL 269

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            AC  +G + +G ++ + ++   G+  ++     L+ + S+   +D A ++   +     
Sbjct: 270 QACGELGCLDEGMRVHELLVR-IGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRT- 327

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA-------AMWQH 459
           + +W A++  C  +  +E   R+    + L+   P S+ L+S + A A       A W H
Sbjct: 328 QVSWNAMILGCAQNGCSEDAVRLFTR-MQLENVKPDSFTLVSVIPALADISDPLQARWIH 386

Query: 460 VSKVR--------KLMSVMEVKKEPGYSYI-----EFGKGSHIFYAGETSHPLKDEIF-E 505
              +R         L +++++  + G   I        +  H+       H      F +
Sbjct: 387 GYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGK 446

Query: 506 LLTELDAEMKRRGYVPDTSSVL 527
              EL  EMK  G VP+ ++ L
Sbjct: 447 AAVELFEEMKSIGIVPNETTFL 468


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 220/632 (34%), Positives = 352/632 (55%), Gaps = 64/632 (10%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           + LID   +   +  A  + + + ++  V W  +++ Y Q    ++ + +F   L  D  
Sbjct: 192 SALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLE-DGF 250

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP---NN 158
           +PD +  +S++ AC  LG+ RLG Q+H+  +      D  V   LVDMYAK  +    + 
Sbjct: 251 EPDRYTMSSMISACTELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDY 310

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM-----EIFEQAPVRNLFLWT------- 206
           A  VF+ +   + +SWTA++S Y +SG +++ +     E+  ++   N   ++       
Sbjct: 311 ANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCA 370

Query: 207 ----------------------------ALVSGLVQS------RNEIDAFY--SFIEMRR 230
                                       ALVS   +S      R   +  Y  S I    
Sbjct: 371 SISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCIT 430

Query: 231 EGVDI------------VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
           EG D             +     +S++ A A+  +L  G+Q+H + +  G+ S  F+SN+
Sbjct: 431 EGRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVSNS 490

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           +V MY++C  +  A   F  ++ ++V+SWTS+I G A+HG AE  L+L+ +M+  GVKPN
Sbjct: 491 LVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPN 550

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           +VT++ ++ ACSHVGLV +G++ F+SM  D+G+ P ++HY C++DLL+RSG + EA   I
Sbjct: 551 DVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFI 610

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
             MP + D   W  LL AC+ H N E+G   A +++ L+P DP+ Y+LLSN+YA A +W 
Sbjct: 611 NEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGLWD 670

Query: 459 HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
            V+++R  M    + KE G S++E    +H F AG+TSHP   +I+  L  L  ++K  G
Sbjct: 671 EVARIRSAMRDNNLNKETGLSWMEVENTTHEFRAGDTSHPRAQDIYGKLDTLVRQIKGMG 730

Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
           YVPDTS VLHDM  + KE+ L  HSE++AVA+GL+ +     +R+ KNLRVC DCH  +K
Sbjct: 731 YVPDTSIVLHDMSDELKEQYLLQHSEKIAVAFGLITTSAPKPIRIFKNLRVCADCHSAIK 790

Query: 579 MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +S+ T+REI++RD+ R+H  KDG+CSC ++W
Sbjct: 791 YMSKATRREIILRDSNRFHRMKDGECSCGEYW 822



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 183/386 (47%), Gaps = 40/386 (10%)

Query: 23  KTLHAQIIKLGL-HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ-RDHVSWASILTAYN 80
           + LH ++++  L  +   + N+L+  Y +C  V  A ++ + M   RD VSW ++ +   
Sbjct: 68  RALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLA 127

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           +    + ++ +   ML    L P+ +   +                 HACF    +C   
Sbjct: 128 RNGAERGSLLLIGEMLE-SGLLPNAYTLCA---------------AAHACFPHELYC--- 168

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           +V   ++ +  K GL     AV            +A++   AR+G    A ++F+    +
Sbjct: 169 LVGGVVLGLVHKMGLWGTDVAV-----------GSALIDMLARNGDLASARKVFDGLIEK 217

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
            + +WT L+S  VQ     +A   F++   +G +  D   +SS++ AC     + LG Q+
Sbjct: 218 TVVVWTLLISRYVQGECAEEAVELFLDFLEDGFE-PDRYTMSSMISACTELGSVRLGLQL 276

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD----IFGRMRRKDVVSWTSIIVGTAQ 316
           H L + +G  S   +S  +VDMYAK S+I  A D    +F RM + DV+SWT++I G  Q
Sbjct: 277 HSLALRMGLASDACVSCGLVDMYAK-SNIGQAMDYANKVFERMPKNDVISWTALISGYVQ 335

Query: 317 HG-QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
            G Q  + +AL+ EM++  +KPN +T+  ++ +C+ +     GR++   +I+    +   
Sbjct: 336 SGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHT 395

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAM 401
                L+ + + SG ++EA  +   +
Sbjct: 396 VG-NALVSMYAESGCMEEARRVFNQL 420



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 147/303 (48%), Gaps = 37/303 (12%)

Query: 119 GATRLGKQVHACFVLSPFCDDD-VVKSSLVDMYAKCGLPNNARAVFDSIK-LKNSVSWTA 176
           G  RLG+ +H   +     D D VV +SL+ +Y++CG   +AR VFD ++ L++ VSWTA
Sbjct: 62  GDLRLGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTA 121

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
           M S  AR+G ++ ++          L +   L SGL+ +   + A               
Sbjct: 122 MASCLARNGAERGSL----------LLIGEMLESGLLPNAYTLCA----------AAHAC 161

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
            P  L  +VG      V ++G  + G  +A+G        +A++DM A+  D+ +A+ +F
Sbjct: 162 FPHELYCLVGGVVLGLVHKMG--LWGTDVAVG--------SALIDMLARNGDLASARKVF 211

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
             +  K VV WT +I    Q   AEE + L+ + +  G +P+  T   +I AC+ +G V 
Sbjct: 212 DGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTELGSVR 271

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG---HLDEAENLIKAMPFEPDEPTWAAL 413
            G +L  S+    G+         L+D+ ++S     +D A  + + MP + D  +W AL
Sbjct: 272 LGLQL-HSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMP-KNDVISWTAL 329

Query: 414 LSA 416
           +S 
Sbjct: 330 ISG 332



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 71/320 (22%), Positives = 133/320 (41%), Gaps = 57/320 (17%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA      + + +HA +IK        + N L+  Y +   ++ A  +  ++ +R  
Sbjct: 366 LKSCASISDHDSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYER-- 423

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            S    +T      L  + + +         +      FASL+ A  S+G    G+Q+HA
Sbjct: 424 -SMIPCITEGRDFPLDHRIVRM--------DVGISSSTFASLISAAASVGMLTKGQQLHA 474

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + + F  D  V +SLV MY++CG   +A   F+ +K +N +SWT+M+S  A+ G  + 
Sbjct: 475 MSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAER 534

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +F                                +M   GV   D   + +++ AC+
Sbjct: 535 ALSLFH-------------------------------DMILTGVKPNDVTYI-AVLSACS 562

Query: 250 NFAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           +  ++  GK+        HGL+  + + +C+      VD+ A+   +  A +    M  K
Sbjct: 563 HVGLVREGKEYFRSMQRDHGLIPRMEHYACM------VDLLARSGIVKEALEFINEMPLK 616

Query: 303 -DVVSWTSIIVGTAQHGQAE 321
            D + W +++     H   E
Sbjct: 617 ADALVWKTLLGACRSHDNIE 636



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 42/179 (23%), Positives = 87/179 (48%), Gaps = 15/179 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHA  +K G      + N+L+  Y +C  ++ A     E+  R+ +SW S+++   + 
Sbjct: 470 QQLHAMSLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKH 529

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ +S+F  M+ L  ++P+   + +++ AC  +G  R GK+    +  S   D  ++
Sbjct: 530 GYAERALSLFHDMI-LTGVKPNDVTYIAVLSACSHVGLVREGKE----YFRSMQRDHGLI 584

Query: 143 K-----SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKKDAMEIFE 195
                 + +VD+ A+ G+   A    + + LK +++ W  +L A     R  D +E+ E
Sbjct: 585 PRMEHYACMVDLLARSGIVKEALEFINEMPLKADALVWKTLLGAC----RSHDNIEVGE 639


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/588 (36%), Positives = 333/588 (56%), Gaps = 32/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LH Q++K  LH    +  TL++ Y  C  ++ A  L E M  R+ V W S+++ Y + 
Sbjct: 99  KVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKN 158

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           + P + + ++  M   D   PD    A+LV AC  L    +G ++H+           V+
Sbjct: 159 HCPNEALLLYKKMEE-DGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVL 217

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            S+LV+MYAKC                               G  K A ++F++   +++
Sbjct: 218 GSALVNMYAKC-------------------------------GDLKTARQVFDKLSDKDV 246

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
           + W+AL+ G V++    +A   F E+        + + + +++ ACA    LE G+ +H 
Sbjct: 247 YAWSALIFGYVKNNRSTEALQLFREVAGGSNMRPNEVTILAVISACAQLGDLETGRWVHD 306

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +        + ++N+++DM++KC DI AAK IF  M  KD++SW S++ G A HG   E
Sbjct: 307 YITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGRE 366

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            LA +  M +  ++P+E+TF+G++ ACSH GLV +G+KLF  +   YG+    +HY C++
Sbjct: 367 ALAQFRLMQTTDLQPDEITFIGVLTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMV 426

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G L EA   I+ MP +PD   W ++L AC+ + N E+G   A  LL L+P +  
Sbjct: 427 DLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTNDG 486

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            YILLSN+YA   MW  V KVR+LM+   ++K PG S +     +H F AG+ SHP   E
Sbjct: 487 VYILLSNIYAKRKMWNEVKKVRELMNEKGIQKTPGCSSVVIDNIAHSFLAGDCSHPEIAE 546

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I  +L ++  ++K  GYV DTS VL +++  +KE  +  HSE+LA+ YGLLKS  G  + 
Sbjct: 547 ISIMLRQVREKLKLAGYVADTSEVLLNIDDNKKEESVSQHSEKLALCYGLLKSEIGGRIV 606

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++KNLRVC DCH ++K++S+I +R+I +RD  R+HHFKDG CSC D+W
Sbjct: 607 ILKNLRVCSDCHTLIKLVSKIYQRQITLRDRNRFHHFKDGSCSCRDYW 654



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 69/237 (29%), Positives = 118/237 (49%), Gaps = 5/237 (2%)

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F      ++  W +++   V S     A  S+ EM     ++ D     S++  CA
Sbjct: 31  AYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSYTEMLERSRNVPDRFTFPSLLKGCA 90

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
                ++GK +HG V+     S L+I   +++MYA C D+ +A+ +F RM  ++ V WTS
Sbjct: 91  LLLEFKVGKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTS 150

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-D 368
           +I G  ++    E L LY +M   G  P+EVT   L+ AC+ +  +G G KL   + E D
Sbjct: 151 MISGYMKNHCPNEALLLYKKMEEDGFSPDEVTMATLVSACAELKDLGVGMKLHSHIREMD 210

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA-CKHHRNTE 424
             I   L   + L+++ ++ G L  A  +   +  + D   W+AL+    K++R+TE
Sbjct: 211 MKICAVLG--SALVNMYAKCGDLKTARQVFDKLS-DKDVYAWSALIFGYVKNNRSTE 264



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 86/193 (44%), Gaps = 13/193 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CA+     T + +H  I +        L N+LID + KC  +  A  + + M  +D 
Sbjct: 289 ISACAQLGDLETGRWVHDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYKDL 348

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK---- 125
           +SW S++  +    L ++ ++ F  M   D LQPD   F  ++ AC   G  + GK    
Sbjct: 349 ISWNSMVNGFALHGLGREALAQFRLMQTTD-LQPDEITFIGVLTACSHAGLVQEGKKLFY 407

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARS 184
           ++ A + +    +       +VD+  + GL   AR     + L+ +   W +ML A    
Sbjct: 408 EIEALYGVRLKSEH---YGCMVDLLCRAGLLAEAREFIRVMPLQPDGAIWGSMLGAC--- 461

Query: 185 GRKKDAMEIFEQA 197
            R  + +E+ E+A
Sbjct: 462 -RVYNNLELGEEA 473


>gi|15235537|ref|NP_195454.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
 gi|75213666|sp|Q9SZT8.1|PP354_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g37380, chloroplastic; Flags: Precursor
 gi|4468804|emb|CAB38205.1| putative protein [Arabidopsis thaliana]
 gi|7270720|emb|CAB80403.1| putative protein [Arabidopsis thaliana]
 gi|332661386|gb|AEE86786.1| Tetratricopeptide repeat (TPR)-like superfamily protein
           [Arabidopsis thaliana]
          Length = 632

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 219/593 (36%), Positives = 347/593 (58%), Gaps = 9/593 (1%)

Query: 22  VKTLHAQIIK--LGLHQYGPLPN-TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           V  +HA I++  L LH   P+ N  L  AY     ++++  L  +    D   + + +  
Sbjct: 45  VLQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINT 104

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
            +   L  +   ++  +L+  ++ P+ F F+SL+K+C    +T+ GK +H   +      
Sbjct: 105 ASINGLKDQAFLLYVQLLS-SEINPNEFTFSSLLKSC----STKSGKLIHTHVLKFGLGI 159

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  V + LVD+YAK G   +A+ VFD +  ++ VS TAM++ YA+ G  + A  +F+   
Sbjct: 160 DPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMC 219

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            R++  W  ++ G  Q     DA   F ++  EG    D + + + + AC+    LE G+
Sbjct: 220 ERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGR 279

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
            IH  V +      + +   ++DMY+KC  +  A  +F    RKD+V+W ++I G A HG
Sbjct: 280 WIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHG 339

Query: 319 QAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
            +++ L L++EM    G++P ++TF+G + AC+H GLV +G ++F+SM ++YGI P ++H
Sbjct: 340 YSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEH 399

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
           Y CL+ LL R+G L  A   IK M  + D   W+++L +CK H +  +G  +A +L+ L 
Sbjct: 400 YGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLN 459

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
            ++   Y+LLSN+YAS   ++ V+KVR LM    + KEPG S IE     H F AG+  H
Sbjct: 460 IKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREH 519

Query: 498 PLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVP 557
               EI+ +L ++   +K  GYVP+T++VL D+E+ EKE+ L  HSERLA+AYGL+ + P
Sbjct: 520 SKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKP 579

Query: 558 GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           G+ L++ KNLRVC DCH V K+IS+IT R+IV+RD  R+HHF DG CSC DFW
Sbjct: 580 GSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGDFW 632


>gi|449445401|ref|XP_004140461.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Cucumis sativus]
          Length = 697

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/596 (36%), Positives = 350/596 (58%), Gaps = 37/596 (6%)

Query: 17  QIALTVKTLHAQIIKLGL--HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWAS 74
           Q+ +  K  H   +K GL  HQY  + N LI  Y KC  V  A  +L  +P  D   +  
Sbjct: 137 QMYVEGKQCHGYALKSGLEFHQY--VKNALIQLYSKCSDVGAAIQILYTVPGNDIFCYNL 194

Query: 75  ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134
           ++    Q     + + +   +++ + ++ ++  + ++ + C SL    LGKQVHA  + S
Sbjct: 195 VVNGLLQHTHMAEAVDVLKLIIS-EGIEWNNATYVTIFRLCASLKDITLGKQVHAQMLKS 253

Query: 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
               D  + SS++DMY KCG   + R  FD ++ +N VSWT++++AY ++       E F
Sbjct: 254 DIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQN-------EFF 306

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
           E+A   NLF           S+ EID                +   ++ +  + A  + L
Sbjct: 307 EEA--LNLF-----------SKMEIDCIPP------------NEYTMAVLFNSAAGLSAL 341

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
            LG Q+H      G +  + + NA++ MY K  DI+AA+ +F  M   ++++W +II G 
Sbjct: 342 CLGDQLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGH 401

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
           + HG  +E L+++ +M++ G +PN VTF+G+I AC+H+ LV +G   F  +++ + I P 
Sbjct: 402 SHHGLGKEALSMFQDMMATGERPNYVTFIGVILACAHLKLVDEGFYYFNHLMKQFRIVPG 461

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           L+HYTC++ LLSRSG LDEAEN +++     D  +W  LL+AC  H++ + G ++A +LL
Sbjct: 462 LEHYTCIVGLLSRSGRLDEAENFMRSHQINWDVVSWRTLLNACYVHKHYDKGRKIAEYLL 521

Query: 435 SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGE 494
            L+P D  +YILLSN++A    W HV ++RKLM    VKKEPG S++E    +H+F + +
Sbjct: 522 QLEPRDVGTYILLSNMHARVRRWDHVVEIRKLMRERNVKKEPGVSWLEIRNVAHVFTSED 581

Query: 495 TSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLK 554
             HP  + I+E + +L ++++  GYVPD  +VLHD+E ++K   L +HSE+LAVAYGL+K
Sbjct: 582 IKHPEANLIYENVKDLLSKIRPLGYVPDIDNVLHDIEDEQKVDNLSYHSEKLAVAYGLMK 641

Query: 555 SVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +  G  + V+KNLR+C DCH  +K+IS++  R IVVRDA R+HHF++G CSC D+W
Sbjct: 642 TPSGAPITVIKNLRMCDDCHTAIKLISKVANRVIVVRDANRFHHFQNGCCSCGDYW 697



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 183/379 (48%), Gaps = 35/379 (9%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+LI+ Y KCD V  A  L + MP+R+ VSW++++  Y Q   P +   +F  M+  D +
Sbjct: 61  NSLINLYVKCDEVSIARKLFDSMPRRNVVSWSALMAGYMQNGNPLEVFELFKKMVVKDNI 120

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P+ +V A+ + +C S      GKQ H   + S       VK++L+ +Y+KC        
Sbjct: 121 FPNEYVIATAISSCDSQMYVE-GKQCHGYALKSGLEFHQYVKNALIQLYSKCS------- 172

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
                                       A++I    P  ++F +  +V+GL+Q  +  +A
Sbjct: 173 ------------------------DVGAAIQILYTVPGNDIFCYNLVVNGLLQHTHMAEA 208

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
                 +  EG++  +   ++ I   CA+   + LGKQ+H  ++    +  ++I ++I+D
Sbjct: 209 VDVLKLIISEGIEWNNATYVT-IFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIID 267

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC ++++ +  F R++ ++VVSWTSII    Q+   EE L L+ +M    + PNE T
Sbjct: 268 MYGKCGNVLSGRTFFDRLQSRNVVSWTSIIAAYFQNEFFEEALNLFSKMEIDCIPPNEYT 327

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
              L  + + +  +  G +L  +  E  G+  ++     L+ +  +SG +  A+++   M
Sbjct: 328 MAVLFNSAAGLSALCLGDQL-HARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNM 386

Query: 402 PFEPDEPTWAALLSACKHH 420
               +  TW A+++   HH
Sbjct: 387 TC-CNIITWNAIITGHSHH 404



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 56/190 (29%), Positives = 102/190 (53%), Gaps = 1/190 (0%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+   R+CA  +     K +HAQ++K  +     + +++ID YGKC  V       + + 
Sbjct: 227 YVTIFRLCASLKDITLGKQVHAQMLKSDIDCDVYIGSSIIDMYGKCGNVLSGRTFFDRLQ 286

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            R+ VSW SI+ AY Q    ++ +++FS M  +D + P+ +  A L  +   L A  LG 
Sbjct: 287 SRNVVSWTSIIAAYFQNEFFEEALNLFSKM-EIDCIPPNEYTMAVLFNSAAGLSALCLGD 345

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q+HA    S    + +V ++L+ MY K G    A++VF ++   N ++W A+++ ++  G
Sbjct: 346 QLHARAEKSGLKGNVMVGNALIIMYFKSGDILAAQSVFSNMTCCNIITWNAIITGHSHHG 405

Query: 186 RKKDAMEIFE 195
             K+A+ +F+
Sbjct: 406 LGKEALSMFQ 415


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/598 (35%), Positives = 340/598 (56%), Gaps = 32/598 (5%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA  ++    + +H   +K    +     NTL+D Y KC  +  A  +  EM  R  VS+
Sbjct: 306 CADSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSY 365

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            S++  Y +  L  + + +F  M   + + PD +   +++  C        GK+VH    
Sbjct: 366 TSMIAGYAREGLAGEAVKLFEEMEE-EGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIK 424

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
            +    D  V ++L+DMYAKCG    A  VF  +++K+ +SW  ++  Y+++    +A+ 
Sbjct: 425 ENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALS 484

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F      NL L                     +E R       D   ++ ++ ACA+ +
Sbjct: 485 LF------NLLL---------------------VEKRFS----PDERTVACVLPACASLS 513

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
             + G++IHG ++  GY S   ++N++VDMYAKC  ++ A+ +F  +  KD+VSWT +I 
Sbjct: 514 AFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIA 573

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G   HG  +E +AL+++M  AG++P+E++FV L+YACSH GLV +G + F  M  +  I 
Sbjct: 574 GYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIE 633

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
           P+++HY C++D+L+R+G+L +A   I+ MP  PD   W ALL  C+ H + ++  RVA  
Sbjct: 634 PTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAERVAEK 693

Query: 433 LLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYA 492
           +  L+PE+   Y+L++N+YA A  W+ V ++RK +    ++K PG S+IE     +IF A
Sbjct: 694 VFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVA 753

Query: 493 GETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGL 552
           G++S+P  ++I   L  + A M   GY P T   L D E+ EKE  L  HSE+LA+A G+
Sbjct: 754 GDSSNPETEKIEAFLRGVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGI 813

Query: 553 LKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + S  G ++RV KNLRVCGDCH + K +S++T+REIV+RD+ R+H FKDG CSC  FW
Sbjct: 814 ISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/408 (23%), Positives = 190/408 (46%), Gaps = 37/408 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L++CA  +     K +   I   G      L + L   Y  C  ++ A  + +++     
Sbjct: 101 LQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQVKIEKA 160

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           + W  ++    ++     +I +F  M++   ++ D + F+ + K+  SL +   G+Q+H 
Sbjct: 161 LFWNILMNELAKSGDFSGSIGLFKKMMS-SGVEMDSYTFSCVSKSFSSLRSVNGGEQLHG 219

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + S F + + V +SLV  Y K    ++AR VFD +  ++ +SW ++++ Y  +G  + 
Sbjct: 220 YILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEK 279

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            + +F Q                          +S IE        +D   + S+   CA
Sbjct: 280 GLSVFVQ------------------------MLFSGIE--------IDLATIVSVFAGCA 307

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +  ++ LG+ +H   +   +       N ++DMY+KC D+ +AK +F  M  + VVS+TS
Sbjct: 308 DSRLISLGRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTS 367

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-D 368
           +I G A+ G A E + L++EM   G+ P+  T   ++  C+   L+ +G+++ + + E D
Sbjct: 368 MIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKEND 427

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G    + +   L+D+ ++ G + EAE +   M  + D  +W  ++  
Sbjct: 428 MGFDIFVSN--ALMDMYAKCGSMREAELVFSEMRVK-DIISWNTVIGG 472



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/187 (33%), Positives = 102/187 (54%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CAR+++    K +H  I +  +     + N L+D Y KC  ++ A  +  EM  +D 
Sbjct: 404 LNCCARNRLLDEGKRVHEWIKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDI 463

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW +++  Y++     + +S+F+ +L   +  PD    A ++ AC SL A   G+++H 
Sbjct: 464 ISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACASLSAFDKGREIHG 523

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + + +  D  V +SLVDMYAKCG    AR +FD I  K+ VSWT M++ Y   G  K+
Sbjct: 524 YIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKE 583

Query: 190 AMEIFEQ 196
           A+ +F Q
Sbjct: 584 AIALFNQ 590



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 172/415 (41%), Gaps = 82/415 (19%)

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           K   D     S+++ C    + + GK+V      + F  D  + S L  MY  CG    A
Sbjct: 89  KWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEA 148

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
             VFD +K++ ++ W  +++  A+SG    ++ +F++                       
Sbjct: 149 SRVFDQVKIEKALFWNILMNELAKSGDFSGSIGLFKK----------------------- 185

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
                   M   GV++ D    S +  + ++   +  G+Q+HG ++  G+     + N++
Sbjct: 186 --------MMSSGVEM-DSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERNSVGNSL 236

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           V  Y K   + +A+ +F  M  +DV+SW SII G   +G AE+ L+++ +M+ +G++ + 
Sbjct: 237 VAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGIEIDL 296

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP--SLQHYTC--LLDLLSRSGHLDEAE 395
            T V +   C+   L+  GR      +  +G+    S +   C  LLD+ S+ G LD A+
Sbjct: 297 ATIVSVFAGCADSRLISLGRA-----VHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAK 351

Query: 396 NLIKAMP--------------------------FE--------PDEPTWAALLSACKHHR 421
            + + M                           FE        PD  T  A+L+ C  +R
Sbjct: 352 VVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARNR 411

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSN----VYASAAMWQHVSKVRKLMSVMEV 472
             + G RV      +K  D    I +SN    +YA     +    V   M V ++
Sbjct: 412 LLDEGKRVHEW---IKENDMGFDIFVSNALMDMYAKCGSMREAELVFSEMRVKDI 463


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/601 (36%), Positives = 340/601 (56%), Gaps = 2/601 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CA+ +     K + + I +LG+     + N L+D Y KC  +  A  + +E   ++ 
Sbjct: 238 ISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNL 297

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V + +I++ Y         + I   ML     +PD     S + AC  LG   +GK  HA
Sbjct: 298 VMYNTIMSNYVHHEWASDVLVILDEMLQKGP-RPDKVTMLSTIAACAQLGDLSVGKSSHA 356

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +     D + ++++DMY KCG    A  VF+ +  K  V+W ++++   R G  + 
Sbjct: 357 YVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMEL 416

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  IF++   R+L  W  ++  LVQ     +A   F EM+ +G+   D + +  I  AC 
Sbjct: 417 AWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIP-GDRVTMVGIASACG 475

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               L+L K +   +        L +  A+VDM+++C D  +A  +F RM ++DV +WT+
Sbjct: 476 YLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTA 535

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
            I   A  G  E  + L++EM+   VKP++V FV L+ ACSH G V +GR+LF SM + +
Sbjct: 536 AIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAH 595

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI P + HY C++DLL R+G L+EA +LI++MP EP++  W +LL+AC+ H+N E+    
Sbjct: 596 GIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYA 655

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  L  L PE    ++LLSN+YASA  W  V++VR  M    V+K PG S IE     H 
Sbjct: 656 AEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQGLIHE 715

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F +G+ SH     I  +L E++  +   GYVPDT++VL D++++EKE  L  HSE+LA+A
Sbjct: 716 FTSGDESHAENTHIGLMLEEINCRLSEAGYVPDTTNVLLDVDEQEKEHLLSRHSEKLAMA 775

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           YGL+ +  G  +RVVKNLR+C DCH   K++S++  REI VRD  RYH FK+G CSC D+
Sbjct: 776 YGLITTGQGIPIRVVKNLRMCSDCHSFAKLVSKLYNREITVRDNNRYHFFKEGFCSCRDY 835

Query: 610 W 610
           W
Sbjct: 836 W 836



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 135/537 (25%), Positives = 232/537 (43%), Gaps = 61/537 (11%)

Query: 22  VKTLHAQIIKLGLHQYGPLPN--TLIDA---YGKCDLVQYAHHLL--EEMPQRDHVSWAS 74
           +K LH  ++K GL  + P  N   LI +    G  + + YA +    ++        +  
Sbjct: 41  LKQLHCDMMKKGLLCHKPASNLNKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNC 100

Query: 75  ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134
           ++  Y  A L  + I ++  ML +  + PD + F  L+ AC  + A   G QVH   +  
Sbjct: 101 LIRGYASAGLGDQAILLYVQMLVMG-IVPDKYTFPFLLSACSKILALSEGVQVHGAVLKM 159

Query: 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
               D  V +SL+  YA+CG  +  R +FD            ML                
Sbjct: 160 GLEGDIFVSNSLIHFYAECGKVDLGRKLFD-----------GMLE--------------- 193

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
                RN+  WT+L++G        +A   F +M   GV+  +P+ +  ++ ACA    L
Sbjct: 194 -----RNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVE-PNPVTMVCVISACAKLKDL 247

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
           ELGK++   +  LG E    + NA+VDMY KC DI AA+ IF     K++V + +I+   
Sbjct: 248 ELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYNTIMSNY 307

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
             H  A + L + DEM+  G +P++VT +  I AC+ +G +  G+     ++ + G+   
Sbjct: 308 VHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRN-GLEGW 366

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
                 ++D+  + G  + A  + + MP      TW +L++      + E+  R+ + +L
Sbjct: 367 DNISNAIIDMYMKCGKREAACKVFEHMP-NKTVVTWNSLIAGLVRDGDMELAWRIFDEML 425

Query: 435 SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGE 494
                D  S+  +       +M++   +  +L   M+ +  PG      G  S   Y G 
Sbjct: 426 E---RDLVSWNTMIGALVQVSMFE---EAIELFREMQNQGIPGDRVTMVGIASACGYLGA 479

Query: 495 -------TSHPLKDEI---FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
                   ++  K++I    +L T L     R G   D SS +H  ++ EK     W
Sbjct: 480 LDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCG---DPSSAMHVFKRMEKRDVSAW 533



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 81/355 (22%), Positives = 143/355 (40%), Gaps = 80/355 (22%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP- 65
           L  +  CA+       K+ HA +++ GL  +  + N +ID Y KC   + A  + E MP 
Sbjct: 336 LSTIAACAQLGDLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPN 395

Query: 66  ------------------------------QRDHVSWASILTAYNQANLPQKTISIFSTM 95
                                         +RD VSW +++ A  Q ++ ++ I +F  M
Sbjct: 396 KTVVTWNSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREM 455

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
                +  D      +  ACG LGA  L K V      +    D  + ++LVDM+++CG 
Sbjct: 456 QN-QGIPGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGD 514

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
           P++A  VF  ++ ++  +WTA +   A  G  + A+E+F                     
Sbjct: 515 PSSAMHVFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFN-------------------- 554

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI-------HGLVIALG 268
                      EM  + V   D +V  +++ AC++   ++ G+Q+       HG+   + 
Sbjct: 555 -----------EMLEQKVK-PDDVVFVALLTACSHGGSVDQGRQLFWSMEKAHGIRPHIV 602

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRM--RRKDVVSWTSIIVGTAQHGQAE 321
           +  C+      VD+  +   +  A D+   M     DVV W S++    +H   E
Sbjct: 603 HYGCM------VDLLGRAGLLEEAVDLIQSMPIEPNDVV-WGSLLAACRKHKNVE 650


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/609 (36%), Positives = 344/609 (56%), Gaps = 34/609 (5%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           ++Y   LR C   +     + LHA+++  GL     L   L+D Y  C LV  A  L +E
Sbjct: 64  NNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDE 123

Query: 64  MPQRDHVS-WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
           MP + +V  W  ++ AY +    +  I ++  MLA   ++PD+F +  ++KAC +L    
Sbjct: 124 MPNQGNVFLWNVLIRAYARDGPREAAIELYREMLACGSMEPDNFTYPPVLKACAALLDLG 183

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
            G++VH   + + +  D  V + L+DMYAKCG  + A AV                    
Sbjct: 184 AGREVHDRVMRTSWAADVFVCAGLIDMYAKCGCVDEAWAV-------------------- 223

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
                      F+   VR+  +W ++++   Q+    +A      M  EG+     + L 
Sbjct: 224 -----------FDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPT-IVTLV 271

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           S + A A+   L  G+++HG     G+ S   +  +++DMYAK   +  A+ +F ++  +
Sbjct: 272 SAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVTVARVLFDQLFHR 331

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           +++SW ++I G   HG A+    L+  M + A V P+ +TFVG++ AC+H G+V + +++
Sbjct: 332 ELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEAKEV 391

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F  M+  Y I P +QHYTCL+D+L  SG   EA ++IK M  +PD   W ALL+ CK H+
Sbjct: 392 FDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHK 451

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           N E+     + L+ L+PED  +Y+LLSN+YA +  W+  ++VRKLM+   +KK    S+I
Sbjct: 452 NVELAELALHKLIELEPEDAGNYVLLSNIYAQSGKWEEAARVRKLMTNRGLKKIIACSWI 511

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E    SH F  G+ SHP  DEI+E L  L+  + + GYVPDT+SV H++E  EK   +  
Sbjct: 512 ELKGKSHGFLVGDASHPRSDEIYEELERLEGLISQTGYVPDTTSVFHNVEDDEKRNMVRG 571

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSERLA+A+GL+ + PGT L V KNLRVC DCH+V+K+IS+I +REI++RD  RYHHF +
Sbjct: 572 HSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHFVN 631

Query: 602 GKCSCNDFW 610
           G+CSC D W
Sbjct: 632 GECSCKDHW 640



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 108/405 (26%), Positives = 176/405 (43%), Gaps = 72/405 (17%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           +H  +A+++++C    A R G+Q+HA  ++S    D V+ + LVD+YA CGL + AR +F
Sbjct: 62  NHNNYATILRSCVLSRAVRPGRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLF 121

Query: 164 DSIKLKNSVS-WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
           D +  + +V  W  ++ AYAR G ++ A+E++                            
Sbjct: 122 DEMPNQGNVFLWNVLIRAYARDGPREAAIELYR--------------------------- 154

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
               EM   G    D      ++ ACA    L  G+++H  V+   + + +F+   ++DM
Sbjct: 155 ----EMLACGSMEPDNFTYPPVLKACAALLDLGAGREVHDRVMRTSWAADVFVCAGLIDM 210

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           YAKC  +  A  +F     +D V W S+I    Q+G+  E LAL   M + G+ P  VT 
Sbjct: 211 YAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCRNMAAEGIAPTIVTL 270

Query: 343 VGLIYACSHVGLVGKGRKLFK-SMIEDYGITPSLQHYTCLLDLLSRS------------- 388
           V  I A +  G + +GR+L        +G    L+  T LLD+ ++S             
Sbjct: 271 VSAISAAADAGALPRGRELHGYGWRRGFGSQDKLK--TSLLDMYAKSGWVTVARVLFDQL 328

Query: 389 ------------------GHLDEAENLIKAMPFE----PDEPTWAALLSACKHHRNTEMG 426
                             GH D A  L + M  E    PD  T+  +LSAC H    +  
Sbjct: 329 FHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVLSACNHGGMVQEA 388

Query: 427 TRVANHLLSLKPEDP--SSYILLSNVYASAAMWQHVSKVRKLMSV 469
             V + ++++    P    Y  L +V   +  ++  S V K M V
Sbjct: 389 KEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLV 433


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  420 bits (1080), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/587 (36%), Positives = 338/587 (57%), Gaps = 38/587 (6%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H+   K G + +  +    I  Y KC  ++    L  E  + D V++ +++  Y     
Sbjct: 243 IHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGE 302

Query: 85  PQKTISIFST-MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
            + ++S+F   ML+  +L+    V  SLV   G L    L   +H   + S F     V 
Sbjct: 303 TELSLSLFKELMLSGARLRSSTLV--SLVPVSGHL---MLIYAIHGYCLKSNFLSHASVS 357

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           ++L  +Y+K     +AR                               ++F+++P ++L 
Sbjct: 358 TALTTVYSKLNEIESAR-------------------------------KLFDESPEKSLP 386

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            W A++SG  Q+    DA   F EM++      +P+ ++ I+ ACA    L LGK +H L
Sbjct: 387 SWNAMISGYTQNGLTEDAISLFREMQKSEFS-PNPVTITCILSACAQLGALSLGKWVHDL 445

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           V +  +ES +++S A++ MYAKC  I  A+ +F  M +K+ V+W ++I G   HGQ +E 
Sbjct: 446 VRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEA 505

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           L ++ EM+++G+ P  VTF+ ++YACSH GLV +G ++F SMI  YG  PS++HY C++D
Sbjct: 506 LNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVD 565

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           +L R+GHL  A   I+AM  EP    W  LL AC+ H++T +   V+  L  L P++   
Sbjct: 566 ILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFELDPDNVGY 625

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
           ++LLSN++++   +   + VR+     ++ K PGY+ IE G+  H+F +G+ SHP   EI
Sbjct: 626 HVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKEI 685

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
           +E L +L+ +M+  GY P+T   LHD+E++E+E  +  HSERLA+A+GL+ + PGT +R+
Sbjct: 686 YEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRI 745

Query: 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +KNLRVC DCH V K+IS+IT+R IVVRDA R+HHFKDG CSC D+W
Sbjct: 746 IKNLRVCLDCHTVTKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 174/398 (43%), Gaps = 37/398 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H Q +  G      L + ++  Y K   V+ A  + + MP++D + W ++++ Y + 
Sbjct: 139 RVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKN 198

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            +  ++I +F  ++     + D      ++ A   L   RLG Q+H+    +     D V
Sbjct: 199 EMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYV 258

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +  + +Y+KCG      A+F   +  + V++ AM+  Y  +G  + ++ +F++  +   
Sbjct: 259 LTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGA 318

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
            L ++ +  LV     +   Y+                                   IHG
Sbjct: 319 RLRSSTLVSLVPVSGHLMLIYA-----------------------------------IHG 343

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             +   + S   +S A+  +Y+K ++I +A+ +F     K + SW ++I G  Q+G  E+
Sbjct: 344 YCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTED 403

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            ++L+ EM  +   PN VT   ++ AC+ +G +  G K    ++       S+   T L+
Sbjct: 404 AISLFREMQKSEFSPNPVTITCILSACAQLGALSLG-KWVHDLVRSTDFESSIYVSTALI 462

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            + ++ G + EA  L   M  + +E TW  ++S    H
Sbjct: 463 GMYAKCGSIAEARRLFDLMT-KKNEVTWNTMISGYGLH 499



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 109/499 (21%), Positives = 202/499 (40%), Gaps = 75/499 (15%)

Query: 26  HAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLP 85
           HAQII  G      L   L         + YA  +   + + D   +  ++  ++    P
Sbjct: 40  HAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESP 99

Query: 86  QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV-KS 144
             ++S+F+ +     L+P+   +A  + A       R G+ +H   V+   CD +++  S
Sbjct: 100 HSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVDG-CDSELLLGS 158

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           ++V MY K                     W           R +DA ++F++ P ++  L
Sbjct: 159 NIVKMYFKF--------------------W-----------RVEDARKVFDRMPEKDTIL 187

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W  ++SG  ++   +++   F ++  E    +D   L  I+ A A    L LG QIH L 
Sbjct: 188 WNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLA 247

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
              G  S  ++    + +Y+KC  I     +F   R+ D+V++ ++I G   +G+ E +L
Sbjct: 248 TKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSL 307

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGL------------------------------ 354
           +L+ E++ +G +    T V L+    H+ L                              
Sbjct: 308 SLFKELMLSGARLRSSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKL 367

Query: 355 --VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPT 409
             +   RKLF     D     SL  +  ++   +++G  ++A +L + M    F P+  T
Sbjct: 368 NEIESARKLF-----DESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVT 422

Query: 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469
              +LSAC       +G  V  H L    +  SS  + + +    A    +++ R+L  +
Sbjct: 423 ITCILSACAQLGALSLGKWV--HDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDL 480

Query: 470 MEVKKEPGYSYIEFGKGSH 488
           M  K E  ++ +  G G H
Sbjct: 481 MTKKNEVTWNTMISGYGLH 499



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 10/209 (4%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           + +  +H   +K     +  +   L   Y K + ++ A  L +E P++   SW ++++ Y
Sbjct: 336 MLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGY 395

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            Q  L +  IS+F  M    +  P+      ++ AC  LGA  LGK VH     + F   
Sbjct: 396 TQNGLTEDAISLFREMQK-SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESS 454

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ--- 196
             V ++L+ MYAKCG    AR +FD +  KN V+W  M+S Y   G+ ++A+ IF +   
Sbjct: 455 IYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLN 514

Query: 197 -----APVRNL-FLWTALVSGLVQSRNEI 219
                 PV  L  L+    +GLV+  +EI
Sbjct: 515 SGITPTPVTFLCVLYACSHAGLVKEGDEI 543



 Score = 39.7 bits (91), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 73/168 (43%), Gaps = 6/168 (3%)

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           Q H  +I  G+ + + +   +    +    I  A+DIF  ++R DV  +  ++ G + + 
Sbjct: 38  QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 319 QAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
               +L+++  +  S  +KPN  T+   I A S       GR +    + D G    L  
Sbjct: 98  SPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGRVIHGQAVVD-GCDSELLL 156

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
            + ++ +  +   +++A  +   MP E D   W  ++S    +R  EM
Sbjct: 157 GSNIVKMYFKFWRVEDARKVFDRMP-EKDTILWNTMISG---YRKNEM 200


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/606 (36%), Positives = 334/606 (55%), Gaps = 43/606 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CAR  +      +H+ + K G      +   ++  Y KC  ++ A  + ++M  ++ 
Sbjct: 111 LKACARLNLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNV 170

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW  ++    +    ++ + +F  +L    L+PD FV   +++AC  LG    G+ +  
Sbjct: 171 VSWTGMICGCIEFGKFREAVDLFRGLLE-SGLRPDGFVIVRVLRACARLGDLESGRWIDR 229

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
           C        +  V +SLVDMY KCG    AR VFD +  K+ V W+AM+  YA +G  ++
Sbjct: 230 CMRECGLSRNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPRE 289

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+E+                               F EMR+  V   D   +   + +CA
Sbjct: 290 AIEL-------------------------------FFEMRKVNVR-PDCYAMVGALSSCA 317

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISN-----AIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           +   LELG    GL   + YE   F+SN     +++D YAKC  +  A  ++  M+ KD 
Sbjct: 318 SLGALELGNWAKGL---MNYEE--FLSNPVLGTSLIDFYAKCGSMEEALGVYKMMKEKDR 372

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           V + ++I G A +GQ      ++ +M   G+ PNE TFVGL+  C+H GLV  GR  F S
Sbjct: 373 VVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCTHAGLVDDGRHYFNS 432

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           M  D+ +TP+++HY C++DLL+R+G LDEA NLIK MP + +   W +LL  C+ HR T+
Sbjct: 433 MSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKANVIVWGSLLGGCRLHRETQ 492

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +   V   L+ L+P +   Y+LLSN+Y+++  W    K+R  ++   ++K PGYS++E  
Sbjct: 493 LAEHVLKQLIELEPWNSGHYVLLSNIYSASRRWDEAEKIRSTVNEKGMQKLPGYSWVEVD 552

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
              H F  G+TSHPL  +I+E L  L  ++K  GY P T  VL D+E++EKE  L  HSE
Sbjct: 553 GVVHEFLVGDTSHPLSQKIYEKLESLFKDLKEAGYNPTTEFVLFDVEEEEKEHFLGCHSE 612

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           +LAVA+ L+ +    V+RVVKNLRVCGDCH  +K IS++T REIV+RD  R+H F DG C
Sbjct: 613 KLAVAFALISTGAKYVIRVVKNLRVCGDCHEAIKHISKVTGREIVIRDNNRFHCFSDGAC 672

Query: 605 SCNDFW 610
           SC D+W
Sbjct: 673 SCRDYW 678



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 118/225 (52%), Gaps = 4/225 (1%)

Query: 193 IFEQAPVR-NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
           +F + P   N FL+  ++ G+V      +A + +  M +  + + D    S ++ ACA  
Sbjct: 59  VFHKTPTNSNTFLYNTMIRGMVSKDRFNNAVHLYASMHKAAI-VPDSFTFSFVLKACARL 117

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
            +  LG  IH LV   G++  +F+   +V  Y+KC  +  A  +F  M  K+VVSWT +I
Sbjct: 118 NLFHLGVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMI 177

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G  + G+  E + L+  ++ +G++P+    V ++ AC+ +G +  GR + + M E  G+
Sbjct: 178 CGCIEFGKFREAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRE-CGL 236

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           + ++   T L+D+ ++ G ++EA  +   M  E D   W+A++  
Sbjct: 237 SRNVFVATSLVDMYTKCGSMEEARFVFDGM-VEKDIVCWSAMIQG 280


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/539 (38%), Positives = 321/539 (59%), Gaps = 6/539 (1%)

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
           W +I+  +    L ++ ++ ++ ML    ++P+ F F+S++K C        GK +H+  
Sbjct: 43  WTAIIHGHALRGLHEQALNFYAQMLT-QGVEPNAFTFSSILKLC----PIEPGKALHSQA 97

Query: 132 VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
           V   F  D  V++ L+D+YA+ G   +A+ +FD++  K+ VS TAML+ YA+ G    A 
Sbjct: 98  VKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAAR 157

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
            +F+    R+   W  ++ G  Q+    +A   F  M +      +  VLS ++ AC   
Sbjct: 158 VLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLS-VLSACGQL 216

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
             LE G+ +H  +   G +  + +  A+VDMY+KC  +  A+ +F ++  KDVV+W S+I
Sbjct: 217 GALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMI 276

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
           VG A  G ++E L L+  M   G+ P  +TF+G++ AC H G V +G  +F  M ++YGI
Sbjct: 277 VGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGI 336

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
            P ++HY C+++LL R+GH+++A  L+K M  EPD   W  LL AC+ H    +G ++  
Sbjct: 337 EPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVE 396

Query: 432 HLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFY 491
            L+     +  +YILLSN+YA+   W  V+++R +M    VKKEPG S IE     H F 
Sbjct: 397 LLVDQNLANSGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFL 456

Query: 492 AGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYG 551
           AG  +HP + EI+ +L E++  +K  GY P T  VLHD+ + EKER L  HSE+LA+A+G
Sbjct: 457 AGGLNHPKRKEIYMMLEEINGWLKSHGYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFG 516

Query: 552 LLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           L+ + PGT +++VKNLRVC DCH V K+IS+IT R+IVVRD  R+HHF +G CSC D+W
Sbjct: 517 LINTQPGTTIKIVKNLRVCADCHEVTKLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 575



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/364 (25%), Positives = 154/364 (42%), Gaps = 76/364 (20%)

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
           +YA  GR   ++ +F +    ++F WTA++ G         A   + +M  +GV+  +  
Sbjct: 18  SYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVE-PNAF 76

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
             SSI+  C     +E GK +H   + LG++S L++   ++D+YA+  D+++A+ +F  M
Sbjct: 77  TFSSILKLCP----IEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTM 132

Query: 300 RRKDVVS-------------------------------WTSIIVGTAQHGQAEETLALYD 328
             K +VS                               W  +I G  Q+G   E L L+ 
Sbjct: 133 PEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFR 192

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
            M+ A  KPNEVT + ++ AC  +G +  GR +  S IE+ GI  ++   T L+D+ S+ 
Sbjct: 193 RMLKAKAKPNEVTVLSVLSACGQLGALESGRWV-HSYIENNGIQFNVHVGTALVDMYSKC 251

Query: 389 GHLD-------------------------------EAENLIKA---MPFEPDEPTWAALL 414
           G L+                               EA  L K+   M   P   T+  +L
Sbjct: 252 GSLEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGIL 311

Query: 415 SACKHHRNTEMGTRVANHLLSLKPEDP--SSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
           SAC H      G  + N +      +P    Y  + N+   A    HV +  +L+  M +
Sbjct: 312 SACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAG---HVEQAYELVKNMNI 368

Query: 473 KKEP 476
           + +P
Sbjct: 369 EPDP 372



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/204 (29%), Positives = 96/204 (47%), Gaps = 32/204 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---------------- 66
           K LH+Q +KLG      +   L+D Y +   V  A  L + MP+                
Sbjct: 91  KALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKH 150

Query: 67  ---------------RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
                          RD V W  ++  Y Q  +P + + +F  ML   K +P+     S+
Sbjct: 151 GELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKA-KAKPNEVTVLSV 209

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           + ACG LGA   G+ VH+    +    +  V ++LVDMY+KCG   +AR VFD I  K+ 
Sbjct: 210 LSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDV 269

Query: 172 VSWTAMLSAYARSGRKKDAMEIFE 195
           V+W +M+  YA  G  ++A+++F+
Sbjct: 270 VAWNSMIVGYAMXGFSQEALQLFK 293



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/201 (20%), Positives = 86/201 (42%), Gaps = 9/201 (4%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L  L  C +     + + +H+ I   G+     +   L+D Y KC  ++ A  + +++  
Sbjct: 207 LSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDD 266

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG-- 124
           +D V+W S++  Y      Q+ + +F +M  +  L P +  F  ++ ACG  G    G  
Sbjct: 267 KDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMG-LHPTNITFIGILSACGHSGWVTEGWD 325

Query: 125 --KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAY 181
              ++   + + P  +       +V++  + G    A  +  ++ ++ + V W  +L A 
Sbjct: 326 IFNKMKDEYGIEPKIEH---YGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGAC 382

Query: 182 ARSGRKKDAMEIFEQAPVRNL 202
              G+     +I E    +NL
Sbjct: 383 RLHGKIALGEKIVELLVDQNL 403


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 227/607 (37%), Positives = 339/607 (55%), Gaps = 36/607 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE--E 63
           + H L+ C+        + +HAQ+ +LG      + N LI  Y KC  +  A  + E   
Sbjct: 122 FPHLLKACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLP 181

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           +P+R  VSW +I++AY Q   P + + IFS M  +D ++PD     S++ A   L   + 
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMD-VKPDWVALVSVLNAFTCLQDLKQ 240

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G+ +HA  V      +  +  SL  MYAKCG    A+ +FD +K                
Sbjct: 241 GRSIHASVVKMGLEIEPDLLISLNTMYAKCGQVATAKILFDKMK---------------- 284

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
                        +P  NL LW A++SG  ++    +A   F EM  + V   D + ++S
Sbjct: 285 -------------SP--NLILWNAMISGYAKNGYAREAIDMFHEMINKDVR-PDTISITS 328

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
            + ACA    LE  + ++  V    Y   +FIS+A++DM+AKC  +  A+ +F R   +D
Sbjct: 329 AISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRD 388

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           VV W+++IVG   HG+A E ++LY  M   GV PN+VTF+GL+ AC+H G+V +G   F 
Sbjct: 389 VVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFF- 447

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
           +++ D+ I P  QHY C++DLL R+GHLD+A  +IK MP +P    W ALLSACK HR+ 
Sbjct: 448 NLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHV 507

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           E+G   A  L S+ P +   Y+ LSN+YA+A +W  V++VR  M    + K+ G S++E 
Sbjct: 508 ELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEV 567

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
                 F  G+ SHP  +EI   +  +++ +K  G+V +  + LHD+  +E E  L  HS
Sbjct: 568 RGRLEAFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHS 627

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           ER+A+AYGL+ +  GT LR+ KNLR C +CH   K+IS++  REIVVRD  R+HHFKDG 
Sbjct: 628 ERIAIAYGLISTPQGTPLRITKNLRACVNCHAATKLISKLVDREIVVRDTNRFHHFKDGV 687

Query: 604 CSCNDFW 610
           CSC D+W
Sbjct: 688 CSCGDYW 694



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 60/286 (20%), Positives = 121/286 (42%), Gaps = 14/286 (4%)

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           KQIH  ++ LG +   F+   ++   +   DI  A+ +F  + R  +  W +II G +++
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
              ++ L +Y  M  A V P+  TF  L+ ACS +  +  GR    + +   G    +  
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR-FVHAQVFRLGFDADVFV 156

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPF-EPDEPTWAALLSACKHHRNTEMGTRVANHL--L 434
              L+ L ++   L  A  + + +P  E    +W A++SA   +        + +H+  +
Sbjct: 157 QNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKM 216

Query: 435 SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV---MEVKKEPGYSY---IEFGKGSH 488
            +KP+    ++ L +V  +    Q + + R + +    M ++ EP         + K   
Sbjct: 217 DVKPD----WVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQ 272

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE 534
           +  A      +K     L   + +   + GY  +   + H+M  K+
Sbjct: 273 VATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKD 318


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  420 bits (1079), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/609 (35%), Positives = 337/609 (55%), Gaps = 45/609 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLG-LHQYGP-------LPNTLIDAYGKCDLVQYAHHLL 61
           +++C RH  A   + +H  +   G L  Y         + N+L+  Y K  L+  A  L 
Sbjct: 79  VKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYAKFGLLDDALRLF 138

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
           + MP+R+ V+W +++ A   A+  ++    F   +  D + P+ + F+S++ ACG+ G  
Sbjct: 139 DRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFSSVLGACGTPGVL 198

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
                +HA  V      D  V+SSL+D Y K G  +  R                     
Sbjct: 199 ---AALHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGR--------------------- 234

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
                      +F++   R+L +W ++++G  QS + + A   F+ M+  G    +   L
Sbjct: 235 ----------RVFDEMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFS-ANQGTL 283

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           +S++ AC    +LE G+Q+H  V  L YE  L + NA++DMY KC  +  A+ +F RM +
Sbjct: 284 TSVLRACTGMVMLEAGRQVHAHV--LKYERDLILHNALLDMYCKCGSLEDAEALFHRMPQ 341

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           +DV+SW+++I G AQ+G++ E L ++D M S GV PN +T VG+++ACSH GLV  G   
Sbjct: 342 RDVISWSTMISGLAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYY 401

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F+SM + +GI P  +H+ C++DLL R+G LDEA   I+ M  EPD   W  LL AC+ H+
Sbjct: 402 FRSMKKLFGIQPEREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHK 461

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           +  +    A  +L L+P+D  + +LLSN YA    W    K  K M    +KKEPG S+I
Sbjct: 462 SGNLAAYAAREILKLEPDDQGARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWI 521

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E  K  H+F AG+ SHP  D I + L  L   +   GYVP T  VL D+  ++KE  L +
Sbjct: 522 ELEKHVHVFIAGDLSHPCSDTIVQELNRLIGRISALGYVPQTEFVLQDLAIEQKEDLLKY 581

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSE++A+A+G + +V G  +R++KNLR+CGDCH   K++S+   R I++RD  R+HHF+D
Sbjct: 582 HSEKMAIAFGTMHAVGGKPIRIMKNLRICGDCHAFAKLVSKSEGRMIIIRDPVRFHHFQD 641

Query: 602 GKCSCNDFW 610
           G CSC D+W
Sbjct: 642 GACSCGDYW 650


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/653 (33%), Positives = 358/653 (54%), Gaps = 68/653 (10%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H Q I  G      L + ++  Y K   V+ A  + + MP++D + W ++++ Y +  +
Sbjct: 141 IHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEM 200

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC----------FVLS 134
             ++I +F  ++     + D      ++ A   L   RLG Q+H+           +VL+
Sbjct: 201 YVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLT 260

Query: 135 PFCD---------------------DDVVKSSLVDMYAKCGLPNNARAVFDSI-----KL 168
            F                       D V  ++++  Y   G    + ++F  +     KL
Sbjct: 261 GFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKL 320

Query: 169 KNS--VSW-----------------------------TAMLSAYARSGRKKDAMEIFEQA 197
           K+S  VS                              TA+ + Y++    + A ++F+++
Sbjct: 321 KSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDES 380

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P ++L  W A++SG  Q+    DA   F EM+       +P+ ++ I+ ACA    L LG
Sbjct: 381 PEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFS-PNPVTITCILSACAQLGALSLG 439

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           K +H LV +  +ES +++S A++ MYAKC  I  A+ +F  M +K+ V+W ++I G   H
Sbjct: 440 KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLH 499

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G  +E L ++ EM+++G+ P  VTF+ ++YACSH GLV +G ++F SMI  YG  PS++H
Sbjct: 500 GHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKH 559

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
           Y C++D+L R+GHL  A   I+AMP +P    W  LL AC+ H++T +   V+  L  L 
Sbjct: 560 YACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFELD 619

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
           P++   ++LLSN++++   +   + VR+     ++ K PGY+ IE G+  H+F +G+ SH
Sbjct: 620 PDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSH 679

Query: 498 PLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVP 557
           P    I E L +L+ +M+  GY P+T   LHD+E++E+E  +  HSERLA+A+GL+ + P
Sbjct: 680 PQVKAIHEKLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEP 739

Query: 558 GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           GT +R++KNLRVC DCH   K+IS+IT+R IVVRDA R+HHFKDG CSC D+W
Sbjct: 740 GTEIRIIKNLRVCLDCHTATKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/499 (21%), Positives = 200/499 (40%), Gaps = 75/499 (15%)

Query: 26  HAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLP 85
           HAQI+  G      L   L         + YA  +   + + D   +  ++  ++    P
Sbjct: 40  HAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESP 99

Query: 86  QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV-KS 144
             ++++F+ +     L+P+   +A  + A       R G  +H   ++   CD +++  S
Sbjct: 100 HSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDDRAGCVIHGQAIVDG-CDSELLLGS 158

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           ++V MY K     +AR VFD +  K+++ W  M+S Y ++    +++++F          
Sbjct: 159 NIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFR--------- 209

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                                 ++  E    +D   L  I+ A A    L LG QIH L 
Sbjct: 210 ----------------------DLINESCTRLDTTTLLDILPAVAELQELRLGMQIHSLA 247

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
              G  S  ++    + +Y+KC  I  A  +F   RR D+V++ ++I G   +G+ E +L
Sbjct: 248 TKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSL 307

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGL------------------------------ 354
           +L+ E++ +G K    T V L+    H+ L                              
Sbjct: 308 SLFKELMLSGAKLKSSTLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKL 367

Query: 355 --VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPT 409
             +   RKLF     D     SL  +  ++   +++G  ++A +L + M    F P+  T
Sbjct: 368 NEIESARKLF-----DESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVT 422

Query: 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469
              +LSAC       +G  V  H L    +  SS  + + +    A    +++ R+L   
Sbjct: 423 ITCILSACAQLGALSLGKWV--HDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDF 480

Query: 470 MEVKKEPGYSYIEFGKGSH 488
           M  K E  ++ +  G G H
Sbjct: 481 MPKKNEVTWNTMISGYGLH 499



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 100/209 (47%), Gaps = 10/209 (4%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           + +  +H   +K     +  +   L   Y K + ++ A  L +E P++   SW ++++ Y
Sbjct: 336 MLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGY 395

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            Q  L +  IS+F  M    +  P+      ++ AC  LGA  LGK VH     + F   
Sbjct: 396 TQNGLTEDAISLFREMQN-SEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFESS 454

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ--- 196
             V ++L+ MYAKCG    AR +FD +  KN V+W  M+S Y   G  ++A+ IF +   
Sbjct: 455 IYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLN 514

Query: 197 ---APVRNLF---LWTALVSGLVQSRNEI 219
              AP    F   L+    +GLV+  +EI
Sbjct: 515 SGIAPTPVTFLCVLYACSHAGLVKEGDEI 543


>gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 605

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/559 (39%), Positives = 324/559 (57%), Gaps = 36/559 (6%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           + YA HL + M + D V + SI   Y+++  P +  ++F  +L  D L PD++ F SL+K
Sbjct: 81  MSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILE-DDLLPDNYTFPSLLK 139

Query: 114 ACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSV 172
           AC    A   G+Q+H C  +    DD+V V  +L++MY +C   + AR VFD I     V
Sbjct: 140 ACAVAKALEEGRQLH-CLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCVV 198

Query: 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
            + AM++ YAR  R  +A+ +F +   +NL              NEI             
Sbjct: 199 CYNAMITGYARRNRPNEALSLFREMQGKNL------------KPNEI------------- 233

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
                   L S++ +CA    L+LGK IH      G+   + ++ A++DM+AKC  +  A
Sbjct: 234 -------TLLSVLSSCALLGSLDLGKWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDA 286

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
             IF  MR KD  +W+++IV  A HGQAE ++ +++ M S  V+P+E+TF+GL+ ACSH 
Sbjct: 287 VSIFENMRYKDTQAWSAMIVAYANHGQAENSMLMFERMRSENVQPDEITFLGLLNACSHT 346

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           GLV +GR+ F  M+ ++GI PS++HY  ++DLL R+GHL++A   I  +P  P    W  
Sbjct: 347 GLVEEGREYFSWMVHEFGIVPSIKHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRI 406

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
           LL+AC  H N E+  +V+  +L L       Y++LSN+YA    W+ V  +RK+M   + 
Sbjct: 407 LLAACSSHNNLELAEKVSERILELDDSHGGDYVILSNLYARNKKWEAVDSLRKVMKDRKA 466

Query: 473 KKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH-DME 531
            K PG S IE     H F++G+       ++   L E+  E+K  GYVPDTS V+H DM 
Sbjct: 467 VKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLAGYVPDTSMVVHADMG 526

Query: 532 QKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVR 591
            +EKE  L +HSE+LA+A+GLL + PGT +RVVKNLRVC DCH   K+IS I  R++V+R
Sbjct: 527 DQEKEITLRYHSEKLAIAFGLLNTPPGTTIRVVKNLRVCRDCHSAAKLISLIFGRKVVLR 586

Query: 592 DATRYHHFKDGKCSCNDFW 610
           D  R+HHF+DGKCSC DFW
Sbjct: 587 DVQRFHHFEDGKCSCRDFW 605



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 109/193 (56%), Gaps = 1/193 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA  +     + LH   +KLG+     +  TLI+ Y +C+ V  A  + + + +   
Sbjct: 138 LKACAVAKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIVEPCV 197

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V + +++T Y + N P + +S+F  M     L+P+     S++ +C  LG+  LGK +H 
Sbjct: 198 VCYNAMITGYARRNRPNEALSLFREMQG-KNLKPNEITLLSVLSSCALLGSLDLGKWIHE 256

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 FC    V ++L+DM+AKCG  ++A ++F++++ K++ +W+AM+ AYA  G+ ++
Sbjct: 257 YAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQAEN 316

Query: 190 AMEIFEQAPVRNL 202
           +M +FE+    N+
Sbjct: 317 SMLMFERMRSENV 329



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 76/161 (47%), Gaps = 5/161 (3%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H    K G  +Y  +   LID + KC  +  A  + E M  +D  +W++++ AY   
Sbjct: 252 KWIHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANH 311

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              + ++ +F  M + + +QPD   F  L+ AC   G    G++  + +++  F     +
Sbjct: 312 GQAENSMLMFERMRS-ENVQPDEITFLGLLNACSHTGLVEEGREYFS-WMVHEFGIVPSI 369

Query: 143 K--SSLVDMYAKCGLPNNARAVFDSIKLKNS-VSWTAMLSA 180
           K   S+VD+  + G   +A    D + +  + + W  +L+A
Sbjct: 370 KHYGSMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAA 410


>gi|115471325|ref|NP_001059261.1| Os07g0239600 [Oryza sativa Japonica Group]
 gi|33146689|dbj|BAC80084.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50510012|dbj|BAD30625.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610797|dbj|BAF21175.1| Os07g0239600 [Oryza sativa Japonica Group]
          Length = 720

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 232/632 (36%), Positives = 345/632 (54%), Gaps = 61/632 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +R CA      + K +H  +++ G+H    L N ++D Y KC   + A  +   M +RD 
Sbjct: 119 VRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDA 178

Query: 70  VSWASILTAYNQAN-----------LPQKTISIFSTML-----------ALDKLQP---- 103
           VSW   + A  Q+             P +  + ++T++           AL  L+     
Sbjct: 179 VSWNIAIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQA 238

Query: 104 ----DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
               +H+ +++     G L    LG+Q+H   +++    D  V+SSL+DMY KCGL   A
Sbjct: 239 GVVFNHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAA 298

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL-FLWTALVSGLVQSRNE 218
            +VFD         W+ +                      R++ F W+ +V+G VQ+  E
Sbjct: 299 ASVFDH--------WSPL---------------------TRDMNFAWSTMVAGYVQNGRE 329

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            +A   F  M REGV   D   L+S+  ACAN  ++E G+Q+HG V  L Y+    +++A
Sbjct: 330 EEALDLFRRMLREGV-AADRFTLTSVAAACANVGMVEQGRQVHGCVEKLWYKLDAPLASA 388

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           IVDMYAKC ++  A+ IF R   K++  WTS++   A HGQ    + L++ M +  + PN
Sbjct: 389 IVDMYAKCGNLEDARSIFDRACTKNIAVWTSMLCSYASHGQGRIAIELFERMTAEKMTPN 448

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           E+T VG++ ACSHVGLV +G   FK M E+YGI PS++HY C++DL  RSG LD+A+N I
Sbjct: 449 EITLVGVLSACSHVGLVSEGELYFKQMQEEYGIVPSIEHYNCIVDLYGRSGLLDKAKNFI 508

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
           +      +   W  LLSAC+ H++ E     +  L+ L+  D  SY++LSN+YA+   W 
Sbjct: 509 EENNINHEAIVWKTLLSACRLHQHNEYAKLASEKLVQLEQCDAGSYVMLSNIYATNNKWH 568

Query: 459 HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
              ++R  M   +V+K+PG S+I      H F AG+ SHP   EI+  L +L   +K  G
Sbjct: 569 DTFELRVSMQERKVRKQPGRSWIHLKNTVHTFVAGDASHPQSAEIYAYLEKLVERLKEIG 628

Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
           Y   T  V+HD+E +++E  L +HSE+LA+A+G++ +  GT LR+ KNLRVC DCH  +K
Sbjct: 629 YTSRTDLVVHDVEDEQRETALKFHSEKLAIAFGIISTPSGTPLRIFKNLRVCEDCHEAIK 688

Query: 579 MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            IS  T REIVVRD  R+HHFKD  CSC DFW
Sbjct: 689 YISLATGREIVVRDLYRFHHFKDASCSCEDFW 720



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 189/367 (51%), Gaps = 6/367 (1%)

Query: 57  AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116
           A  + +E P R    W   ++   +       +  F+ MLA  +  P+ FV A++V+ C 
Sbjct: 64  ARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEATPNAFVLAAVVRCCA 123

Query: 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTA 176
            +G    GK+VH   + +    D V+ ++++DMYAKCG    AR VF ++  +++VSW  
Sbjct: 124 GMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRVFGAMAERDAVSWNI 183

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
            + A  +SG    +M++F+++P+R+   W  ++SGL++S +  DA      M + GV + 
Sbjct: 184 AIGACIQSGDILGSMQLFDESPLRDTTSWNTIISGLMRSGHAADALSHLRRMAQAGV-VF 242

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           +    S+         + +LG+Q+HG V+    E   F+ ++++DMY KC  + AA  +F
Sbjct: 243 NHYTYSTAFVLAGMLLLPDLGRQLHGRVLIAALEGDAFVRSSLMDMYCKCGLLEAAASVF 302

Query: 297 GR---MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
                + R    +W++++ G  Q+G+ EE L L+  M+  GV  +  T   +  AC++VG
Sbjct: 303 DHWSPLTRDMNFAWSTMVAGYVQNGREEEALDLFRRMLREGVAADRFTLTSVAAACANVG 362

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
           +V +GR++    +E           + ++D+ ++ G+L++A ++        +   W ++
Sbjct: 363 MVEQGRQV-HGCVEKLWYKLDAPLASAIVDMYAKCGNLEDARSIFD-RACTKNIAVWTSM 420

Query: 414 LSACKHH 420
           L +   H
Sbjct: 421 LCSYASH 427



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 80/154 (51%)

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
           ++L  + R  R  DA  +F++ P R   +WT  +SG  +     D   +F EM  EG   
Sbjct: 50  SVLRFWVRRRRFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFAEMLAEGEAT 109

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
            +  VL+++V  CA    +E GK++HG ++  G    + + NA++DMYAKC     A+ +
Sbjct: 110 PNAFVLAAVVRCCAGMGDVESGKRVHGWMLRNGVHLDVVLCNAVLDMYAKCGQFERARRV 169

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDE 329
           FG M  +D VSW   I    Q G    ++ L+DE
Sbjct: 170 FGAMAERDAVSWNIAIGACIQSGDILGSMQLFDE 203


>gi|414867547|tpg|DAA46104.1| TPA: hypothetical protein ZEAMMB73_772392 [Zea mays]
          Length = 677

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/569 (37%), Positives = 332/569 (58%), Gaps = 37/569 (6%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           + L+  Y +C  ++ A  + + MP++D V+W++++  +  A  P + ++++S M     +
Sbjct: 146 SALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEALAMYSRMRE-HGV 204

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             D  V   +++AC S G  R+G  VH   +      D V  +SLV MY           
Sbjct: 205 SDDEVVMVGVIQACMSTGNARIGASVHGRLLRHCMRMDVVTTTSLVSMY----------- 253

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
                               A++G    A ++F   P RN   W+AL+SG  Q+   ++A
Sbjct: 254 --------------------AKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNGRAVEA 293

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F E++ +G+      ++S+++ ACA+   L+LGK IHG ++      C+ +  A++D
Sbjct: 294 LDLFRELQADGLQPCSWALVSALL-ACASVGFLKLGKSIHGFILRRLEWQCI-LGTAVLD 351

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY+KC  + +A+ +F ++  +D+V W +II     HG   + LAL+ E+   G+KP+  T
Sbjct: 352 MYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQELNETGIKPDHAT 411

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F  L+ A SH GLV +G+  F  MI+++GI P+ +HY C++DLL+RSG ++EA +++ +M
Sbjct: 412 FASLLSALSHSGLVEEGKFWFDRMIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASM 471

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
             EP    W  LLS C +++  E+G  +A  +L L+PED     L+SN+YA+A  W  V 
Sbjct: 472 QTEPTIAIWVILLSGCLNNKKLELGETIAKKILELRPEDIGVLALVSNLYAAAKKWDKVR 531

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           ++RKLM     KK PGYS IE     H F   + SHP   EI +++ +L++EM++ GYVP
Sbjct: 532 EIRKLMKDSGSKKVPGYSLIEVKGTRHAFVMEDQSHPQHREILKMVAKLNSEMRKLGYVP 591

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
            T  V HD+++   ++ L +HSERLA+A+GLL + PGT L ++KNLRVCGDCH  +K IS
Sbjct: 592 RTEFVYHDLDE---DQLLSYHSERLAIAFGLLNTSPGTRLVIIKNLRVCGDCHDAIKYIS 648

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I  REIVVRDA R+HHFKDG CSC D+W
Sbjct: 649 KIVDREIVVRDAKRFHHFKDGACSCGDYW 677



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 160/349 (45%), Gaps = 37/349 (10%)

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
           W  +L+A+++A  P   + +F  + +    +P+   F   + AC  LG     + V    
Sbjct: 76  WNGLLSAHSRAGAPGAALRVFRALPS--SARPNSTTFTLTLTACARLGDLDAAESVRVRA 133

Query: 132 VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
             + +  D  V S+L+ +Y++CG    A  VFD +  K+ V+W+ M++ +  +GR  +A+
Sbjct: 134 FAAGYGHDVFVCSALLHLYSRCGAMEEAIRVFDGMPRKDRVAWSTMVAGFVTAGRPVEAL 193

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
            ++ +                               MR  GV   D +V+  ++ AC + 
Sbjct: 194 AMYSR-------------------------------MREHGVSD-DEVVMVGVIQACMST 221

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
               +G  +HG ++       +  + ++V MYAK   +  A  +F  M  ++ V+W+++I
Sbjct: 222 GNARIGASVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALI 281

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G AQ+G+A E L L+ E+ + G++P     V  + AC+ VG +  G+ +   ++     
Sbjct: 282 SGFAQNGRAVEALDLFRELQADGLQPCSWALVSALLACASVGFLKLGKSIHGFILRRLEW 341

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
              L   T +LD+ S+ G L+ A  L   +    D   W A+++ C  H
Sbjct: 342 QCILG--TAVLDMYSKCGSLESARKLFNKLS-SRDLVLWNAIIACCGTH 387



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/325 (20%), Positives = 147/325 (45%), Gaps = 38/325 (11%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           ++H ++++  +        +L+  Y K   +  A  +   MP R+ V+W+++++ + Q  
Sbjct: 229 SVHGRLLRHCMRMDVVTTTSLVSMYAKNGHLDVACQVFRMMPYRNDVTWSALISGFAQNG 288

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
              + + +F  + A D LQP  +   S + AC S+G  +LGK +H  F+L       ++ 
Sbjct: 289 RAVEALDLFRELQA-DGLQPCSWALVSALLACASVGFLKLGKSIHG-FILRRLEWQCILG 346

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           ++++DMY+KCG   +AR +F+ +  ++ V W A+++     G   DA+ +F+        
Sbjct: 347 TAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTHGCGHDALALFQ-------- 398

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK-QIHG 262
                                  E+   G+   D    +S++ A ++  ++E GK     
Sbjct: 399 -----------------------ELNETGIK-PDHATFASLLSALSHSGLVEEGKFWFDR 434

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS-WTSIIVGTAQHGQAE 321
           ++   G E        IVD+ A+   +  A D+   M+ +  ++ W  ++ G   + + E
Sbjct: 435 MIKEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSGCLNNKKLE 494

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLI 346
               +  +++   ++P ++  + L+
Sbjct: 495 LGETIAKKILE--LRPEDIGVLALV 517



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 24/170 (14%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K++H  I++  L     L   ++D Y KC  ++ A  L  ++  RD V W +I+      
Sbjct: 329 KSIHGFILRR-LEWQCILGTAVLDMYSKCGSLESARKLFNKLSSRDLVLWNAIIACCGTH 387

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 +++F   L    ++PDH  FASL+ A    G    GK          F  D ++
Sbjct: 388 GCGHDALALFQE-LNETGIKPDHATFASLLSALSHSGLVEEGK----------FWFDRMI 436

Query: 143 KS-----------SLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSA 180
           K             +VD+ A+ GL   A  +  S++ + +++ W  +LS 
Sbjct: 437 KEFGIEPAEKHYVCIVDLLARSGLVEEANDMLASMQTEPTIAIWVILLSG 486


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/605 (36%), Positives = 342/605 (56%), Gaps = 6/605 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C++ +   + KT+H   +K G+ +   +   L++ Y  C  V+ A  + + MP R+ 
Sbjct: 350 LPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNV 409

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W S+ + Y     PQK +++F  M+ L+ ++PD     S++ AC  L   + GK +H 
Sbjct: 410 VTWNSLSSCYVNCGFPQKGLNVFREMV-LNGVKPDLVTMLSILHACSDLQDLKSGKVIHG 468

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V     +D  V ++L+ +YAKC     A+ VFD I  +   SW  +L+AY  +   + 
Sbjct: 469 FAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEK 528

Query: 190 AMEIFEQAPVRNL----FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
            + +F Q     +      W+ ++ G V++    +A   F +M+  G    D   + SI+
Sbjct: 529 GLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFK-PDETTIYSIL 587

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            AC+    L +GK+IH  V     +  L  +NA+VDMYAKC  +  ++++F  M  KDV 
Sbjct: 588 RACSLSECLRMGKEIHCYVFRHWKDWDLARTNALVDMYAKCGGLSLSRNVFDMMPIKDVF 647

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SW ++I     HG  +E L+L+++M+ + VKP+  TF  ++ ACSH  LV +G ++F SM
Sbjct: 648 SWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSMLVEEGVQIFNSM 707

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
             D+ + P  +HYTC++D+ SR+G L+EA   I+ MP EP    W A L+ C+ ++N E+
Sbjct: 708 SRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPMEPTAIAWKAFLAGCRVYKNVEL 767

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
               A  L  + P   ++Y+ L N+  +A +W   SK+RKLM    + K PG S+   G 
Sbjct: 768 AKISAKKLFEIDPNGSANYVTLFNILVTAKLWSEASKIRKLMKERGITKTPGCSWFHVGN 827

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H F AG+ S+   D+I+  L EL A++K  GY PDT  VLHD++Q+EK   L  HSE+
Sbjct: 828 RVHTFVAGDKSNMESDKIYNFLDELFAKIKAAGYKPDTDYVLHDIDQEEKAESLCNHSEK 887

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LAVA+G+L     + +RV KNLR+CGDCH  +K +S +    IVVRD+ R+HHFK+G CS
Sbjct: 888 LAVAFGILNLNGQSTIRVFKNLRICGDCHNAIKYMSNVVGVTIVVRDSLRFHHFKNGNCS 947

Query: 606 CNDFW 610
           C DFW
Sbjct: 948 CKDFW 952



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 193/406 (47%), Gaps = 35/406 (8%)

Query: 11  RVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHV 70
           + CA  + AL VK  H    + G+     + N  I AYGKC  V+ A  + +++  RD V
Sbjct: 48  KACAASRDALKVKQFHDDATRCGVMSDVSIGNAFIHAYGKCKCVEGARRVFDDLVARDVV 107

Query: 71  SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC 130
           +W S+   Y     PQ+ +++F  M  L+K++ +    +S++  C  L   + GK++H  
Sbjct: 108 TWNSLSACYVNCGFPQQGLNVFRKM-GLNKVKANPLTVSSILPGCSDLQDLKSGKEIHGF 166

Query: 131 FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
            V     +D  V S+ V+ YAKC     A+ VFD +  ++ V+W ++ S Y   G  +  
Sbjct: 167 VVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGFPQKG 226

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
           + +F                                EM  +GV   DP+ +S I+ AC++
Sbjct: 227 LNVFR-------------------------------EMVLDGVK-PDPVTVSCILSACSD 254

Query: 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
              L+ GK IHG  +  G    +F+SNA+V++Y  C  +  A+ +F  M  ++V++W S+
Sbjct: 255 LQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSL 314

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370
                  G  ++ L ++ EM   GVKP+ +    ++ ACS +  +  G+ +    ++ +G
Sbjct: 315 ASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVK-HG 373

Query: 371 ITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +   +   T L++L +    + EA+ +   MP   +  TW +L S 
Sbjct: 374 MVEDVFVCTALVNLYANCLCVREAQTVFDLMPHR-NVVTWNSLSSC 418



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/569 (22%), Positives = 239/569 (42%), Gaps = 111/569 (19%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C+  Q   + K +H   +K G+ +   + N L++ Y  C  V+ A  + + MP R+ 
Sbjct: 249 LSACSDLQDLKSGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNV 308

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           ++W S+ + Y     PQK +++F  M  L+ ++PD    +S++ AC  L   + GK +H 
Sbjct: 309 ITWNSLASCYVNCGFPQKGLNVFREM-GLNGVKPDPMAMSSILPACSQLKDLKSGKTIHG 367

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V     +D  V ++LV++YA C     A+ VFD +  +N V+W ++ S Y   G  + 
Sbjct: 368 FAVKHGMVEDVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQK 427

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            + +F                                EM   GV   D + + SI+ AC+
Sbjct: 428 GLNVFR-------------------------------EMVLNGVK-PDLVTMLSILHACS 455

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS---------DIIAAKDI----- 295
           +   L+ GK IHG  +  G    +F+ NA++ +YAKC          D+I  +++     
Sbjct: 456 DLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNG 515

Query: 296 -----------------FGRMRRKDV----VSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
                            F +M R +V    ++W+ +I G  ++ + EE + ++ +M + G
Sbjct: 516 ILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMG 575

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
            KP+E T   ++ ACS    +  G+++   +   +     L     L+D+ ++ G L  +
Sbjct: 576 FKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWK-DWDLARTNALVDMYAKCGGLSLS 634

Query: 395 ENLIKAMP--------------------------FE--------PDEPTWAALLSACKHH 420
            N+   MP                          FE        PD  T+  +LSAC H 
Sbjct: 635 RNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHS 694

Query: 421 RNTEMGTRVANHLLSLKPEDPSS--YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEP-G 477
              E G ++ N +      +P +  Y  + ++Y+ A   +      + M +     EP  
Sbjct: 695 MLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMPM-----EPTA 749

Query: 478 YSYIEFGKGSHIFYAGETSHPLKDEIFEL 506
            ++  F  G  ++   E +     ++FE+
Sbjct: 750 IAWKAFLAGCRVYKNVELAKISAKKLFEI 778



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 161/337 (47%), Gaps = 43/337 (12%)

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH----ACFVLSPFCDD 139
           LP + I I+++  A   ++PD  VF ++ KAC +       KQ H     C V+S    D
Sbjct: 20  LPNEAIKIYTSSRA-RGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMS----D 74

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             + ++ +  Y KC     AR VFD +  ++ V+W ++ + Y   G  +  + +F +   
Sbjct: 75  VSIGNAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKM-- 132

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                      GL    N++ A               +PL +SSI+  C++   L+ GK+
Sbjct: 133 -----------GL----NKVKA---------------NPLTVSSILPGCSDLQDLKSGKE 162

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           IHG V+  G    +F+S+A V+ YAKC  +  A+ +F  M  +DVV+W S+       G 
Sbjct: 163 IHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLMPHRDVVTWNSLSSCYVNCGF 222

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
            ++ L ++ EMV  GVKP+ VT   ++ ACS +  +  G+ +    ++ +G+  ++    
Sbjct: 223 PQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLKSGKAIHGFALK-HGMVENVFVSN 281

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            L++L      + EA+ +   MP   +  TW +L S 
Sbjct: 282 ALVNLYESCLCVREAQAVFDLMPHR-NVITWNSLASC 317


>gi|224071204|ref|XP_002303374.1| predicted protein [Populus trichocarpa]
 gi|222840806|gb|EEE78353.1| predicted protein [Populus trichocarpa]
          Length = 569

 Score =  419 bits (1078), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/569 (38%), Positives = 325/569 (57%), Gaps = 41/569 (7%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT++  Y +   ++ A    E+MP +D  SW +++T + Q     K   +F  M      
Sbjct: 42  NTMLSCYVRNSNMERAQAFFEDMPIKDTPSWNTMITGFAQNQQMDKARDLFLIM------ 95

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P   V                                 V  ++++  Y +CG  ++A  
Sbjct: 96  -PTKNV---------------------------------VTWNAMISGYVECGDLDSALK 121

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F+    K+ V+WTAM++ Y + GR   A  +FE+ P +NL  W A+++G +++    D 
Sbjct: 122 LFEKAPFKSVVAWTAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDG 181

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M   G+      + S+++G C+  + L+LG+Q+H LV             +++ 
Sbjct: 182 VKLFRTMVGFGIQPNSSTLSSALLG-CSELSALQLGRQVHQLVCKSPLCDDTTAGTSLIS 240

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  +     +F ++ R+DVV+W ++I G AQHG+ ++ L L+DEM+  G+KP+ +T
Sbjct: 241 MYCKCGVLEDGWKLFVQVPRRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPDWIT 300

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           FV ++ AC+H G    G K F SM +DYG+     HYTC++DLL R+G L EA +LI+ M
Sbjct: 301 FVAVLMACNHAGFTDLGVKYFHSMAKDYGLVAKPDHYTCMVDLLGRAGKLVEAVDLIEKM 360

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           PF+P    +  LL AC+ H+NTEM    +  LL+L P   + Y+ L+NVYA+   W HV+
Sbjct: 361 PFKPHAAVFGTLLGACRIHKNTEMAEFASQKLLNLDPASATGYVQLANVYAATKRWDHVA 420

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           +VRK M   +V K PGYS+IE    +H F +G+  HP    I   L EL+ +MK  GYVP
Sbjct: 421 RVRKSMKSCKVVKTPGYSWIEVKSMAHQFRSGDKFHPELASIHGKLKELEKKMKLAGYVP 480

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           D    LHD+ +++KE+ L WHSE+LA+AYGL+K  PGT +RV KNLRVCGDCH  +K IS
Sbjct: 481 DLEFALHDVGEEQKEQLLLWHSEKLAIAYGLIKLPPGTPIRVFKNLRVCGDCHRAIKYIS 540

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I +REI+VRD TR+HHFKDG CSC D+W
Sbjct: 541 QIERREIIVRDTTRFHHFKDGHCSCADYW 569



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/298 (23%), Positives = 135/298 (45%), Gaps = 13/298 (4%)

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           S L  M  K G    A+ +F  I   ++VS+  MLS Y R+   + A   FE  P+++  
Sbjct: 11  SVLAGMSKKRGKLKEAQELFVKIPEPDAVSYNTMLSCYVRNSNMERAQAFFEDMPIKDTP 70

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            W  +++G  Q++    A   F+ M  + V   + ++   +     + A+    K     
Sbjct: 71  SWNTMITGFAQNQQMDKARDLFLIMPTKNVVTWNAMISGYVECGDLDSALKLFEKAPFKS 130

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           V+A           A++  Y K   I  A+ +F +M  K++V+W ++I G  ++ +AE+ 
Sbjct: 131 VVAW---------TAMITGYMKLGRIGLAERLFEKMPEKNLVTWNAMIAGYIENHRAEDG 181

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           + L+  MV  G++PN  T    +  CS +  +  GR++ + ++    +       T L+ 
Sbjct: 182 VKLFRTMVGFGIQPNSSTLSSALLGCSELSALQLGRQVHQ-LVCKSPLCDDTTAGTSLIS 240

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPE 439
           +  + G L++   L   +P   D  TW A++S    H   +    + + ++   +KP+
Sbjct: 241 MYCKCGVLEDGWKLFVQVP-RRDVVTWNAMISGYAQHGEGKKALGLFDEMIEKGMKPD 297


>gi|296090522|emb|CBI40853.3| unnamed protein product [Vitis vinifera]
          Length = 749

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/628 (36%), Positives = 350/628 (55%), Gaps = 45/628 (7%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           +  + +  +K G H    L N LIDAY KC  V YA  + +E+P R  V+W S++ +Y +
Sbjct: 97  ITKIQSHALKRGFHH--SLGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIR 154

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA-CFVLSPFCDDD 140
               ++ I I+  M+  D + PD F F+S+ KA   LG    G++ H    VL     + 
Sbjct: 155 NGRSKEAIDIYQRMVP-DGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNV 213

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE----- 195
            V S+LVDMYAK G   +AR V D +  K+ V +TA++  Y+  G   +++++F      
Sbjct: 214 FVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKK 273

Query: 196 ---------------------------------QAPVRNLFLWTALVSGLVQSRNEIDAF 222
                                            +A + +   WT+++ GLVQ+  E  A 
Sbjct: 274 GIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVTWTSVIVGLVQNGREEIAL 333

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
             F +M R  +   +   LSS++ AC++ A+LE GKQIH +V+  G +   ++  A++D 
Sbjct: 334 LKFRQMLRSSI-TPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDF 392

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           Y KC     A+ +F  +   DVVS  S+I   AQ+G   E L L+  M   G++PN VT+
Sbjct: 393 YGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTW 452

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
           +G++ AC++ GL+ +G  +F S      I  +  HY C++DLL R+G L EAE LI  + 
Sbjct: 453 LGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVN 512

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462
              D   W  LLSAC+ H + EM  RV N ++ L PED  +++LLSN+YAS   W  V +
Sbjct: 513 IS-DVVIWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIE 571

Query: 463 VRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPD 522
           ++  M  M +KK P  S+++  +  H F AG+ SHP   +I E L EL  ++K  GYVPD
Sbjct: 572 MKSAMREMRLKKNPAMSWVDVEREIHTFMAGDWSHPNFRDIREKLEELIEKVKELGYVPD 631

Query: 523 TSSVLHDMEQKEKERQLFWHSERLAVAYGLLKS-VPGTVLRVVKNLRVCGDCHIVMKMIS 581
           T  VL D+++++K R L++HSE+LAVA+ L +S    T +R++KNLRVCGDCH  MK +S
Sbjct: 632 TRFVLQDLDEEKKIRSLYYHSEKLAVAFALWRSNYKNTTIRILKNLRVCGDCHTWMKFVS 691

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDF 609
           +I  R+I+ RD  R+HHF++G CSC D+
Sbjct: 692 KIVGRDIIARDVKRFHHFRNGLCSCGDY 719


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/578 (37%), Positives = 340/578 (58%), Gaps = 12/578 (2%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMP----QRDHVSWASILTAYNQANLPQKTISIFSTMLA 97
           + LI A+      + A  LLE M     + + ++W  +++  N++   +  +     M  
Sbjct: 90  SALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHG 149

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD-DDVVKSSLVDMYAKCGLP 156
            +   PD    +  + A G +G   +G+Q+H  +V+   C  D  V ++L+DMY KCG  
Sbjct: 150 -EGFLPDATGVSCALSAVGDVGDVAVGEQLHG-YVVKAGCRLDACVATALIDMYGKCGRA 207

Query: 157 NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR----NLFLWTALVSGL 212
           +    VFD     +  S  A+++  +R+ +  +A+ +F +   R    N+  WT++V+  
Sbjct: 208 DEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACC 267

Query: 213 VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC 272
           VQ+  +++A   F EM+ EG++  + + +  ++ A AN A L  G+  H   +  G+   
Sbjct: 268 VQNGRDLEAVDLFREMQSEGIE-PNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHD 326

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           +++ +A+VDMYAKC  +  A+ IF  M  ++VVSW ++I G A HG+AE  + L+  M S
Sbjct: 327 IYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQS 386

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
           +  KP+ VTF  ++ ACS  G   +GR  F  M   +GI+P ++HY C++ LL R+G LD
Sbjct: 387 SKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLD 446

Query: 393 EAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           +A ++I  MPFEPD   W +LL +C+ H N  +    A +L  L+PE+  +Y+LLSN+YA
Sbjct: 447 DAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYA 506

Query: 453 SAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDA 512
           S  MW  V+++R +M  + +KKE G S+IE     H+  AG++SHP+   I E L  L  
Sbjct: 507 SKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTM 566

Query: 513 EMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGD 572
           EM+R G+ P T  VLHD+E++EK+  L  HSE+LAVA GL+ +  GT L+V+KNLR+CGD
Sbjct: 567 EMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEKLAVALGLISTSHGTPLQVIKNLRICGD 626

Query: 573 CHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           CH  MK IS   +REI VRD  R+HHFKDGKCSC D+W
Sbjct: 627 CHEAMKFISSFERREIYVRDTNRFHHFKDGKCSCADYW 664



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 156/342 (45%), Gaps = 43/342 (12%)

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ-- 196
           D  V SSL+  Y + G   +AR+V D +  +  V W+A+++A+A  G  + A  + E+  
Sbjct: 54  DAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMR 113

Query: 197 --APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
                 N+  W  LVSGL +S    DA  + + M  EG  + D   +S  + A  +   +
Sbjct: 114 SDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGF-LPDATGVSCALSAVGDVGDV 172

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCS---------------DIIAA------- 292
            +G+Q+HG V+  G      ++ A++DMY KC                D+ +        
Sbjct: 173 AVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGL 232

Query: 293 -------------KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
                        ++  GR    +VVSWTSI+    Q+G+  E + L+ EM S G++PN 
Sbjct: 233 SRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNS 292

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           VT   ++ A +++  +  GR      +   G    +   + L+D+ ++ G + +A  + +
Sbjct: 293 VTIPCVLPAFANIAALMHGRSAHCFSLRK-GFHHDIYVGSALVDMYAKCGRVRDARMIFE 351

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           AMP+  +  +W A++     H   E   R+   + S K E P
Sbjct: 352 AMPYR-NVVSWNAMIGGYAMHGEAENAVRLFRSMQSSK-EKP 391



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 80/194 (41%), Gaps = 42/194 (21%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           ++ H   ++ G H    + + L+D Y KC  V+ A  + E MP R+ VSW +++  Y   
Sbjct: 312 RSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMH 371

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +  + +F +M +  K +PD   F  ++ AC   G T  G                  
Sbjct: 372 GEAENAVRLFRSMQS-SKEKPDLVTFTCVLGACSQAGWTEEG------------------ 412

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-----WTAMLSAYARSGRKKDAMEIFEQA 197
                            R+ F+ ++ K+ +S     +  M++   R+G+  DA +I  Q 
Sbjct: 413 -----------------RSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQM 455

Query: 198 PVR-NLFLWTALVS 210
           P   +  +W +L+ 
Sbjct: 456 PFEPDGCIWGSLLG 469


>gi|218195439|gb|EEC77866.1| hypothetical protein OsI_17132 [Oryza sativa Indica Group]
          Length = 865

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/606 (36%), Positives = 335/606 (55%), Gaps = 14/606 (2%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEM 64
           Y   L  CAR       K LHA++I+  L Q  P + + LI+ Y KC   + A  +   +
Sbjct: 273 YTSSLTACARLFSLGWGKQLHAKVIR-SLPQIDPYVASALIELYAKCGSFKEAKRVFNSL 331

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
             R+ VSW  ++    Q     K++ +F+ M A + +  D F  A+L+  C +     LG
Sbjct: 332 QDRNSVSWTVLIGGSLQYECFSKSVELFNQMRA-ELMAIDQFALATLISGCFNRMDLCLG 390

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           +Q+H+  + S      VV +SL+ +YAKCG   NA  VF S+  ++ VSWT+M++AY++ 
Sbjct: 391 RQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQI 450

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G    A E F+    RN   W A++   +Q   E D    +  M  +     D +   ++
Sbjct: 451 GNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTL 510

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
              CA+    +LG QI G  +  G    + ++NA + MY+KC  I  A+ +F  +  KDV
Sbjct: 511 FRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDV 570

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           VSW ++I G +QHG  ++    +D+M+S G KP+ +++V ++  CSH GLV +G+  F  
Sbjct: 571 VSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDM 630

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           M   +GI+P L+H++C++DLL R+GHL EA++LI  MP +P    W ALLSACK H N E
Sbjct: 631 MTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDE 690

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +    A H+  L   D  SY+LL+ +Y+ A      ++VRKLM    +KK PGYS++E  
Sbjct: 691 LAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVE 750

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
              H+F A + SHP    I   L EL  ++   GYV           + E  R    HSE
Sbjct: 751 NKVHVFKADDVSHPQVIAIRNKLDELMEKIAHLGYV-----------RTESPRSEIHHSE 799

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           +LAVA+G++       + ++KNLR+CGDCH V+K+IS +T RE V+RD  R+HHFK G C
Sbjct: 800 KLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSC 859

Query: 605 SCNDFW 610
           SC D+W
Sbjct: 860 SCGDYW 865



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 132/502 (26%), Positives = 222/502 (44%), Gaps = 66/502 (13%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL-------- 61
           LR C         + LH +++ +GL     L NTL+ AY  C  +  A  LL        
Sbjct: 11  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADIKEPN 70

Query: 62  ------------------------EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLA 97
                                   + MP+RD  SW ++++ Y QA      +  F +M  
Sbjct: 71  VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHR 130

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
                P+ F F  ++K+CG+LG   L  Q+   F    F  D  V+++LVDM+ +CG  +
Sbjct: 131 SGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVD 190

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
            A  +F  I+        +ML+ YA+      A+E FE    R++  W  +++ L QS  
Sbjct: 191 FASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGR 250

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             +A    +EM R+GV + D    +S + ACA    L  GKQ+H  VI    +   ++++
Sbjct: 251 VREALGLVVEMHRKGVRL-DSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVAS 309

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           A++++YAKC     AK +F  ++ ++ VSWT +I G+ Q+    +++ L+++M +  +  
Sbjct: 310 ALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAI 369

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE-- 395
           ++     LI  C +   +  GR+L  S+    G   ++     L+ L ++ G L  AE  
Sbjct: 370 DQFALATLISGCFNRMDLCLGRQL-HSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFV 428

Query: 396 -----------------------NLIKAMPF-----EPDEPTWAALLSACKHHRNTEMGT 427
                                  N+IKA  F       +  TW A+L A   H   E G 
Sbjct: 429 FSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMDTRNAITWNAMLGAYIQHGAEEDGL 488

Query: 428 RVANHLLSLKPEDPS--SYILL 447
           ++ + +LS K   P   +Y+ L
Sbjct: 489 KMYSAMLSQKDVTPDWVTYVTL 510



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 155/343 (45%), Gaps = 38/343 (11%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDS-I 166
            A  +++CGS GA    + +H   V         ++++L+  Y  CG  ++AR +  + I
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYFSCGALSDARRLLRADI 66

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
           K  N ++   M++ YA+ G   DA E+F++ P R++  W  L+SG  Q+R  +D   +F+
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            M R G  + +      ++ +C      EL  Q+ GL     +     +  A+VDM+ +C
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 287 SDIIAAKDIFGRMRR-------------------------------KDVVSWTSIIVGTA 315
             +  A  +F ++ R                               +DVVSW  +I   +
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
           Q G+  E L L  EM   GV+ +  T+   + AC+ +  +G G++L   +I      P +
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSL---PQI 303

Query: 376 QHY--TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             Y  + L++L ++ G   EA+ +  ++  + +  +W  L+  
Sbjct: 304 DPYVASALIELYAKCGSFKEAKRVFNSLQ-DRNSVSWTVLIGG 345


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/588 (37%), Positives = 320/588 (54%), Gaps = 34/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K++H   I+ G  +   +   L D Y KC  V+ A  + + M Q+  VSW S++  Y Q 
Sbjct: 268 KSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQN 327

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P+K I++F  ML  + + P        + AC  LG    GK VH          D  V
Sbjct: 328 GEPEKAIAVFEKMLE-EGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISV 386

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SL+ MY+KC                                R   A +IF     R  
Sbjct: 387 MNSLISMYSKCK-------------------------------RVDIASDIFNNLNGRTH 415

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W A++ G  Q+    +A   F EM+  G+   D   + S++ A A  +V    K IHG
Sbjct: 416 VSWNAMILGYAQNGRVSEALNCFSEMKSLGMK-PDSFTMVSVIPALAELSVTRHAKWIHG 474

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L+I    +  +F++ A+VDMY+KC  I  A+ +F  +  + V++W ++I G   HG    
Sbjct: 475 LIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRA 534

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L+D+M    V+PN++T++ +I ACSH GLV +G + FKSM +DYG+ PS+ HY  ++
Sbjct: 535 ALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMV 594

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G + EA + I+ MP  P    + A   ACK H+N E+G + A  L  L P++  
Sbjct: 595 DLLGRAGRIKEAWDFIENMPISPGITVYGAXXGACKIHKNIEVGEKAAKKLFELNPDEGG 654

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            ++LL+N+YAS + W  V++VRK M    +KK PG S +E     H FY+G T+HP    
Sbjct: 655 YHVLLANIYASTSKWSKVAEVRKTMEKKGLKKTPGCSVVELRNEVHSFYSGSTTHPQSKR 714

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L EL  E+K  GYVPDT+ +L D+E   +E+ L  HSE+LA+A+GLL + PGT + 
Sbjct: 715 IYAFLEELVYEIKAAGYVPDTNLIL-DVEDDVQEQLLNSHSEKLAIAFGLLNTSPGTTIH 773

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V KNLRVCGDCH   K IS +T REI+VRD  R+HHFK+G CSC D+W
Sbjct: 774 VRKNLRVCGDCHNATKYISLVTGREIIVRDMQRFHHFKNGICSCGDYW 821



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 211/471 (44%), Gaps = 71/471 (15%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
           + ++ + L+VC  +      K +H Q+I             +++ Y KC  +  A+ + +
Sbjct: 147 VYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFD 206

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
            MP+RD VSW +I+  ++Q    +K + +   M   +  +PD     +++ A   +G   
Sbjct: 207 RMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQD-EGQRPDSITLVTVLPAAADVGLLM 265

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           +GK +H   + + F     + ++L DMY+KCG    AR +FD +  K  VSW +M+  Y 
Sbjct: 266 VGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYV 325

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           ++G  + A+ +FE+                               M  EG+D     ++ 
Sbjct: 326 QNGEPEKAIAVFEK-------------------------------MLEEGIDPTGVTIME 354

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           ++  ACA+   LE GK +H  V  L   S + + N+++ MY+KC  +  A DIF  +  +
Sbjct: 355 AL-HACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGR 413

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
             VSW ++I+G AQ+G+  E L  + EM S G+KP+  T V +I A + +  V +  K  
Sbjct: 414 THVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELS-VTRHAKWI 472

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL------------------------- 397
             +I    +  ++   T L+D+ S+ G +  A  L                         
Sbjct: 473 HGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLG 532

Query: 398 ---------IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
                    +K    EP++ T+ +++SAC H    + G R   H  S+K +
Sbjct: 533 RAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLR---HFKSMKQD 580



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 206/443 (46%), Gaps = 39/443 (8%)

Query: 17  QIALTVKTLHAQI---IKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWA 73
           ++  ++K LH  I   IK GL+        L+  + K   +  A  + E +  +    + 
Sbjct: 57  ELCTSMKELHQIIPLVIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYH 116

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           ++L  Y + N   +T   F   +  D ++P  + F  L+K CG     + GK++H   + 
Sbjct: 117 TMLKGYAK-NSSLETALAFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLIT 175

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
           + F  +    + +V+MYAKC      R +                          DA ++
Sbjct: 176 NSFAANVFAMTGVVNMYAKC------RQI-------------------------DDAYKM 204

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
           F++ P R+L  W  +++G  Q+     A    + M+ EG    D + L +++ A A+  +
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEG-QRPDSITLVTVLPAAADVGL 263

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L +GK IHG  I  G+   + IS A+ DMY+KC  +  A+ IF  M +K VVSW S++ G
Sbjct: 264 LMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDG 323

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
             Q+G+ E+ +A++++M+  G+ P  VT +  ++AC+ +G + +G+ + K  ++   +  
Sbjct: 324 YVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHK-FVDQLNLGS 382

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
            +     L+ + S+   +D A ++   +       +W A++     +          + +
Sbjct: 383 DISVMNSLISMYSKCKRVDIASDIFNNLNGRT-HVSWNAMILGYAQNGRVSEALNCFSEM 441

Query: 434 LSLKPEDPSSYILLSNVYASAAM 456
            SL  + P S+ ++S + A A +
Sbjct: 442 KSLGMK-PDSFTMVSVIPALAEL 463


>gi|357141866|ref|XP_003572374.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Brachypodium distachyon]
          Length = 642

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/571 (37%), Positives = 322/571 (56%), Gaps = 37/571 (6%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           + N+L+  Y K  ++  A  L   MPQR+ VSW +++ A   A   +K    F   +  D
Sbjct: 109 VSNSLVSMYAKFGMLDDALELFGGMPQRNVVSWTTVVAALANAPGRKKEALRFLVEMRRD 168

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            +  + + F+S++ ACG+ G       +HA  +      D  V+SSL+D Y K G  ++ 
Sbjct: 169 GVAANSYTFSSVLGACGTPGVL---AAMHADIIKVGLDSDVFVRSSLIDAYMKLGDLDSG 225

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           R VF                               ++    +L +W ++++G  QS + +
Sbjct: 226 RGVF-------------------------------DEMVTCDLVVWNSIIAGFAQSGDGV 254

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
            A   F+ M+  G  + +   L+S++ AC    +LE+G+Q+H  V  L Y+  L + NA+
Sbjct: 255 GAMELFMRMKESGF-LANQGTLTSVLRACTGMVMLEVGRQVHAHV--LKYDRDLILHNAL 311

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           +DMY KC  ++ A  +F RM  +DV+SW+++I G AQ+G++ E L ++D M + G  PN 
Sbjct: 312 LDMYCKCGCLLDADALFSRMHDRDVISWSTMISGLAQNGRSVEALKVFDLMKAEGPTPNN 371

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           +T VG+++ACSH GLV  G   F+SM + +GI P  +H  C++DLL R+G LDEA   I 
Sbjct: 372 ITMVGVLFACSHAGLVEDGWHYFRSMDKLFGIQPEREHCNCMVDLLGRAGKLDEAMKFIG 431

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
            M FEPD   W  LL AC+ H+N  + +  A  +L L+PED  + ILLSN+YA    W +
Sbjct: 432 EMKFEPDSVIWRTLLGACRMHKNATLASYAATEILKLEPEDQGARILLSNIYADLRQWSN 491

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
             K  K M    VKKEPG S+IE GK  H+F AGE SHP  D I + L  L    K  GY
Sbjct: 492 AEKSWKTMRDQGVKKEPGRSWIELGKLVHVFIAGELSHPCSDRIVQELNRLIRRAKDLGY 551

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
           VP T  VL D+  ++KE  L +HSE+LA+A+G + S+ G  +R++KNLR+CGDCH   K+
Sbjct: 552 VPQTEFVLQDLGTEQKEDLLKYHSEKLAIAFGTMNSMEGKPVRIMKNLRICGDCHAFAKL 611

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +S+   + I++RD  R+HHF+ G CSC D+W
Sbjct: 612 VSKTEGKAIIIRDPVRFHHFQHGVCSCGDYW 642


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/603 (36%), Positives = 344/603 (57%), Gaps = 35/603 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C   +     + +HA +IK        L   LI  Y KC+ +  A H+ +EM +R+ 
Sbjct: 17  LNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNV 76

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW ++++ Y+Q     + + +F  ML  D  +P+ F FA+++ +C       LG+Q+H+
Sbjct: 77  VSWTAMISGYSQRGFASEALHLFVQMLRSDT-EPNEFTFATVLSSCTGFSGFELGRQIHS 135

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 + +   V SSL+DMYAK                               +GR  +
Sbjct: 136 HIFKRNYENHIFVGSSLLDMYAK-------------------------------AGRIHE 164

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +FE  P R++   TA++SG  Q   + +A   F  ++REG+   + +  +S++ A +
Sbjct: 165 ARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMS-SNYVTYASLLTALS 223

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
             A L+ GKQ+H  V+       + + N+++DMY+KC ++  A+ IF  M  + V+SW +
Sbjct: 224 GLAALDHGKQVHSHVLRCELPFYVVLQNSLIDMYSKCGNLNYARKIFNNMPVRTVISWNA 283

Query: 310 IIVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++VG ++HG+  E + L+  M     VKP+ VTF+ ++  CSH GL  KG ++F  M+  
Sbjct: 284 MLVGYSKHGKGIEVVKLFKLMREENKVKPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNG 343

Query: 369 YG-ITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
              I   ++HY C++DLL R+G ++EA  LIK MPFEP    W +LL AC+ H NT +G 
Sbjct: 344 GDEIEAGIEHYGCVIDLLGRAGRVEEAFELIKKMPFEPTAAIWGSLLGACRVHSNTNIGE 403

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
            V   LL ++PE+  +Y++LSN+YASA  W+ V  VR+LM    V KEPG S+IE  +  
Sbjct: 404 FVGCRLLEIEPENAGNYVILSNLYASAGRWEDVRNVRELMMEKAVIKEPGRSWIELDQTI 463

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
           H FYA + SHP ++E+F  + EL  + K  GYVPD S VL+D+++++KE+ L  HSE+LA
Sbjct: 464 HTFYASDRSHPRREEVFLKVRELLVKFKESGYVPDQSCVLYDVDEEQKEKILLGHSEKLA 523

Query: 548 VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
           +A+GL+ +  G  LRV+KNLR+C DCH   K +S++  R++ +RD  R+HH   G CSC 
Sbjct: 524 LAFGLISTSEGVPLRVIKNLRICVDCHNFAKFVSKVYGRQVSIRDKNRFHHVAGGICSCG 583

Query: 608 DFW 610
           D+W
Sbjct: 584 DYW 586



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 158/319 (49%), Gaps = 35/319 (10%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           +  L+  C +  A R G++VHA  + + +     + + L+ +Y KC     AR VFD ++
Sbjct: 13  YNMLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMR 72

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            +N VSWTAM+S Y++ G   +A+ +F Q               +++S  E + F     
Sbjct: 73  ERNVVSWTAMISGYSQRGFASEALHLFVQ---------------MLRSDTEPNEF----- 112

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
                         ++++ +C  F+  ELG+QIH  +    YE+ +F+ ++++DMYAK  
Sbjct: 113 ------------TFATVLSSCTGFSGFELGRQIHSHIFKRNYENHIFVGSSLLDMYAKAG 160

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            I  A+ +F  +  +DVVS T+II G AQ G  EE L L+  +   G+  N VT+  L+ 
Sbjct: 161 RIHEARGVFECLPERDVVSCTAIISGYAQLGLDEEALELFCRLQREGMSSNYVTYASLLT 220

Query: 348 ACSHVGLVGKGRKLFKSMIE-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
           A S +  +  G+++   ++  +      LQ+   L+D+ S+ G+L+ A  +   MP    
Sbjct: 221 ALSGLAALDHGKQVHSHVLRCELPFYVVLQN--SLIDMYSKCGNLNYARKIFNNMPVRTV 278

Query: 407 EPTWAALLSACKHHRNTEM 425
               A L+   KH +  E+
Sbjct: 279 ISWNAMLVGYSKHGKGIEV 297


>gi|125591422|gb|EAZ31772.1| hypothetical protein OsJ_15924 [Oryza sativa Japonica Group]
          Length = 855

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/606 (36%), Positives = 335/606 (55%), Gaps = 14/606 (2%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEM 64
           Y   L  CAR       K LHA++I+  L Q  P + + LI+ Y KC   + A  +   +
Sbjct: 263 YTSSLTACARLFSLGWGKQLHAKVIR-SLPQIDPYVASALIELYAKCGSFKEAKRVFNSL 321

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
             R+ VSW  ++    Q     K++ +F+ M A + +  D F  A+L+  C +     LG
Sbjct: 322 QDRNSVSWTVLIGGSLQYECFSKSVELFNQMRA-ELMAIDQFALATLISGCFNRMDLCLG 380

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           +Q+H+  + S      VV +SL+ +YAKCG   NA  VF S+  ++ VSWT+M++AY++ 
Sbjct: 381 RQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQI 440

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G    A E F+    RN   W A++   +Q   E D    +  M  +     D +   ++
Sbjct: 441 GNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTL 500

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
              CA+    +LG QI G  +  G    + ++NA + MY+KC  I  A+ +F  +  KDV
Sbjct: 501 FRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDV 560

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           VSW ++I G +QHG  ++    +D+M+S G KP+ +++V ++  CSH GLV +G+  F  
Sbjct: 561 VSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDM 620

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           M   +GI+P L+H++C++DLL R+GHL EA++LI  MP +P    W ALLSACK H N E
Sbjct: 621 MTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDE 680

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +    A H+  L   D  SY+LL+ +Y+ A      ++VRKLM    +KK PGYS++E  
Sbjct: 681 LAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVE 740

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
              H+F A + SHP    I   + EL  ++   GYV           + E  R    HSE
Sbjct: 741 NKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYV-----------RTESPRSEIHHSE 789

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           +LAVA+G++       + ++KNLR+CGDCH V+K+IS +T RE V+RD  R+HHFK G C
Sbjct: 790 KLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSC 849

Query: 605 SCNDFW 610
           SC D+W
Sbjct: 850 SCGDYW 855



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 123/482 (25%), Positives = 222/482 (46%), Gaps = 52/482 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE-EMPQRD 68
           LR C         + LH +++ +GL     L NTL+ AY  C  +  A  LL  ++ + +
Sbjct: 27  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 86

Query: 69  HVSWASILTAYNQAN-----------LPQKTISIFSTMLALDKLQPDHFVFASLVKACGS 117
            ++   ++  Y +             +P++ ++ ++T+++ D  +P     A    +CG+
Sbjct: 87  VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMS-DTSRP-----AGSWMSCGA 140

Query: 118 LGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAM 177
           LG   L  Q+   F    F  D  V+++LVDM+ +CG  + A  +F  I+        +M
Sbjct: 141 LGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVDFASRLFSQIERPTIFCRNSM 200

Query: 178 LSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD 237
           L+ YA+      A+E FE    R++  W  +++ L QS    +A    +EM R+GV + D
Sbjct: 201 LAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRKGVRL-D 259

Query: 238 PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297
               +S + ACA    L  GKQ+H  VI    +   ++++A++++YAKC     AK +F 
Sbjct: 260 STTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVASALIELYAKCGSFKEAKRVFN 319

Query: 298 RMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357
            ++ ++ VSWT +I G+ Q+    +++ L+++M +  +  ++     LI  C +   +  
Sbjct: 320 SLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAIDQFALATLISGCFNRMDLCL 379

Query: 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE---------------------- 395
           GR+L  S+    G   ++     L+ L ++ G L  AE                      
Sbjct: 380 GRQL-HSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYS 438

Query: 396 ---NLIKAMPF-----EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS--SYI 445
              N+IKA  F       +  TW A+L A   H   E G ++ + +LS K   P   +Y+
Sbjct: 439 QIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYV 498

Query: 446 LL 447
            L
Sbjct: 499 TL 500



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 146/325 (44%), Gaps = 28/325 (8%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDS-I 166
            A  +++CGS GA    + +H   V         ++++L+  Y  CG  ++AR +  + I
Sbjct: 23  LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 82

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVS------------GLVQ 214
           K  N ++   M++ YA+ G   DA E+F++ P R++  W  L+S            G + 
Sbjct: 83  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSDTSRPAGSWMSCGALG 142

Query: 215 SRNEIDAFYS-FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
            R         F +    G    DP V +++V        ++   ++   +        +
Sbjct: 143 CRELAPQLLGLFWKFDFWG----DPDVETALVDMFVRCGYVDFASRLFSQI----ERPTI 194

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
           F  N+++  YAK   I  A + F  M  +DVVSW  +I   +Q G+  E L L  EM   
Sbjct: 195 FCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGRVREALGLVVEMHRK 254

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY--TCLLDLLSRSGHL 391
           GV+ +  T+   + AC+ +  +G G++L   +I      P +  Y  + L++L ++ G  
Sbjct: 255 GVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSL---PQIDPYVASALIELYAKCGSF 311

Query: 392 DEAENLIKAMPFEPDEPTWAALLSA 416
            EA+ +  ++  + +  +W  L+  
Sbjct: 312 KEAKRVFNSLQ-DRNSVSWTVLIGG 335


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/592 (35%), Positives = 339/592 (57%), Gaps = 41/592 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHH---LLEEMPQRDHVSWASILTAY 79
           + LH+  ++LGL     +   L+D Y K    Q  H+   +   MP+ + ++W ++L+ Y
Sbjct: 275 QQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGY 334

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            Q       + I    +  + ++P+H  ++S++KAC +LG    G+Q+H   V S   D 
Sbjct: 335 VQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADL 394

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
           +VV ++LV MYA+                               SG  ++A   F+Q   
Sbjct: 395 NVVGNALVSMYAE-------------------------------SGSIEEARHAFDQLYE 423

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
           +N+  ++  + G  +S    D     +E+       +      S++ A A+  +L  G++
Sbjct: 424 KNMVSFSGNLDGDGRSNTYQDYQIERMELG------ISTFTFGSLISAAASVGMLTKGQR 477

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           +H L +  G+ S   I N++V MY++C  ++ A  +F  M   +V+SWTS+I G A+HG 
Sbjct: 478 LHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAKHGY 537

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
           A   L L+ +M++AGVKPN+VT++ ++ ACSH GLV +G++ F+ M + +G+ P ++HY 
Sbjct: 538 AARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRMEHYA 597

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++DLL RSG +++A + I  MP + D   W  LL ACK H N ++G   ANH++ L+P+
Sbjct: 598 CMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQLEPQ 657

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           DP+ Y+LLSN+YA A +W  V+++R LM    + KE G S++      H F AG+TSHP 
Sbjct: 658 DPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDNTIHEFRAGDTSHPQ 717

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
            +EI+  L  L  E+K  GYVPDTS VLHDM  + KE  L  HSE++AVA+GL+     T
Sbjct: 718 AEEIYTKLETLIREIKVMGYVPDTSVVLHDMSDELKELCLLQHSEKIAVAFGLISCTSAT 777

Query: 560 V-LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             +R+ KNLRVC DCH  +K +S+ T REI++RD+ R+H  KDG+CSC ++W
Sbjct: 778 KPIRIFKNLRVCVDCHSALKYVSKATGREIILRDSNRFHRMKDGECSCGEYW 829



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 186/386 (48%), Gaps = 52/386 (13%)

Query: 23  KTLHAQIIKLG--LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTA 78
           + L   +++ G  L     + N+L+  Y KC  V  A  + + MP   RD VSW ++ + 
Sbjct: 67  RALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMASC 126

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL--GKQVHACFVLSPF 136
            ++     + + +F   L  + L P+ F   +  +AC +     L  G  +   F L  +
Sbjct: 127 LSRNGAEAEALRLFGETLE-EGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFW 185

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             D  V  +L+DM+AK G     R VFD +  +  V WT +++ YA+SG   +A+E+   
Sbjct: 186 GTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVEL--- 242

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
                                       F++M   G    D   LSS++ AC       L
Sbjct: 243 ----------------------------FLDMLENGFQ-PDQYTLSSMLSACTELGSFRL 273

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSD---IIAAKDIFGRMRRKDVVSWTSIIVG 313
           G+Q+H L + LG ES   +S  +VDMYAK  +   +  A+++F RM + +V++WT+++ G
Sbjct: 274 GQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSG 333

Query: 314 TAQHG-QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL----FKSMIED 368
             Q G Q  + + L+ +M++ G++PN +T+  ++ AC+++G    GR++     KS + D
Sbjct: 334 YVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLAD 393

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEA 394
             +  +      L+ + + SG ++EA
Sbjct: 394 LNVVGN-----ALVSMYAESGSIEEA 414



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 192/411 (46%), Gaps = 46/411 (11%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           LID + K   +     + + + +R  V W  ++T Y Q+    + + +F  ML  +  QP
Sbjct: 195 LIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDMLE-NGFQP 253

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP---NNAR 160
           D +  +S++ AC  LG+ RLG+Q+H+  +      D  V   LVDMYAK       +NAR
Sbjct: 254 DQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAR 313

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            VF+ +   N ++WTA+LS Y + G + + + I                           
Sbjct: 314 EVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMIL-------------------------- 347

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
               F +M  EG+   + +  SS++ ACAN    + G+QIH   +         + NA+V
Sbjct: 348 ----FCKMLNEGIR-PNHITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNALV 402

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
            MYA+   I  A+  F ++  K++VS++  + G    G++        E +  G+  +  
Sbjct: 403 SMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGD---GRSNTYQDYQIERMELGI--STF 457

Query: 341 TFVGLIYACSHVGLVGKGRKLFK-SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           TF  LI A + VG++ KG++L   S+   +G   ++ +   L+ + SR G+L +A  +  
Sbjct: 458 TFGSLISAAASVGMLTKGQRLHALSLKAGFGSDRAIGN--SLVSMYSRCGYLVDACQVFD 515

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS--LKPEDPSSYILLS 448
            M  + +  +W +++S    H        + + +++  +KP D +   +LS
Sbjct: 516 EMN-DHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLS 565



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 135/283 (47%), Gaps = 37/283 (13%)

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D VV +SL+ +Y+KC     AR+VFD + +                              
Sbjct: 83  DAVVANSLLTLYSKCSAVAAARSVFDGMPVG----------------------------- 113

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL-G 257
           +R+L  WTA+ S L ++  E +A   F E   EG+ + +   L +   AC    +  L G
Sbjct: 114 LRDLVSWTAMASCLSRNGAEAEALRLFGETLEEGL-LPNAFTLCAATQACFASELFHLAG 172

Query: 258 KQIHGLVIALGY-ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
             + GLV  LG+  + + +  A++DM+AK  D++A + +F  +  + VV WT +I   AQ
Sbjct: 173 GAVLGLVFKLGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQ 232

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
            G ++E + L+ +M+  G +P++ T   ++ AC+ +G    G++L  S+    G+     
Sbjct: 233 SGYSDEAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQL-HSLALRLGLESDSC 291

Query: 377 HYTCLLDLLSRSGH---LDEAENLIKAMPFEPDEPTWAALLSA 416
               L+D+ ++S +   L  A  +   MP + +   W ALLS 
Sbjct: 292 VSCGLVDMYAKSHNGQSLHNAREVFNRMP-KHNVMAWTALLSG 333



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/262 (24%), Positives = 121/262 (46%), Gaps = 50/262 (19%)

Query: 254 LELGKQIHGLVIALG--YESCLFISNAIVDMYAKCSDIIAAKDIFGRM--RRKDVVSWTS 309
           + LG+ + G ++  G   E+   ++N+++ +Y+KCS + AA+ +F  M    +D+VSWT+
Sbjct: 63  IHLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTA 122

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF--------------------VGLIY-- 347
           +    +++G   E L L+ E +  G+ PN  T                     +GL++  
Sbjct: 123 MASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKL 182

Query: 348 ---------ACSHVGLVGKG------RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
                     C+ + +  K       R++F  + E   +      +T L+   ++SG+ D
Sbjct: 183 GFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVV-----WTLLITRYAQSGYSD 237

Query: 393 EAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE-DPSSYILLS 448
           EA  L   M    F+PD+ T +++LSAC    +  +G ++ +  L L  E D      L 
Sbjct: 238 EAVELFLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLGLESDSCVSCGLV 297

Query: 449 NVYASAAMWQHVSKVRKLMSVM 470
           ++YA +   Q +   R++ + M
Sbjct: 298 DMYAKSHNGQSLHNAREVFNRM 319


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/607 (36%), Positives = 351/607 (57%), Gaps = 34/607 (5%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           HY   L+ C   +   T + LH +++  GL     L   L+D Y  C LV +A  L + M
Sbjct: 64  HYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHARRLFDGM 123

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           P+R+   W  ++ AY +    +  I ++  M+    ++PD+F +   +KAC +L     G
Sbjct: 124 PKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYG-VEPDNFTYPLALKACAALLDLETG 182

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           ++VH   + + + +D  V + LVDMYAKCG  ++ARA                       
Sbjct: 183 REVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARA----------------------- 219

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
                   +F++  VR+  +W ++++   Q+   ++A     +M   GV      ++S+I
Sbjct: 220 --------VFDRIRVRDSVVWNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVSTI 271

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
             A A+ A L  G+++HG     G++    +  ++VDMYAK   +  A+ +F ++ ++++
Sbjct: 272 -SAAADAAALPRGRELHGFGWRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKREL 330

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           VSW ++I G   HG  +E L L+++M V A V P+ +TFVG++ AC+H G+V + ++ F 
Sbjct: 331 VSWNAMICGYGMHGHFDEALKLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFG 390

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
            M++ Y I P++QH+TCL+D+L  +G  +EA +LIK MP +PD   W ALL+ CK H+N 
Sbjct: 391 LMVDVYSIKPTVQHFTCLVDVLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNV 450

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           E+G      L+ L+PED  +Y+LLSN+YA +  W+  ++VRKLM+   +KK  G S+IE 
Sbjct: 451 ELGELALQKLIELEPEDAGNYVLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWIEL 510

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
              +H F  G+ SHP   EI+E L  L+  M   GY+PDT  V HD+   EK   +  HS
Sbjct: 511 KGKTHGFLVGDASHPRSAEIYEELERLEGLMSDAGYMPDTMPVFHDVGDDEKRNMMRSHS 570

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           ERLA+A+GL+ +  GT L V KNLRVC DCH+V+K+IS+I +REI++RD  RYHHF +G+
Sbjct: 571 ERLAIAFGLISTPSGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVNGE 630

Query: 604 CSCNDFW 610
           CSC D+W
Sbjct: 631 CSCKDYW 637


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/647 (34%), Positives = 345/647 (53%), Gaps = 71/647 (10%)

Query: 34  LHQYGP----LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTI 89
           LH + P    + N L++ Y K   + +A  L +EM QRD+ SW ++L+ Y ++ L +   
Sbjct: 50  LHLFKPNDTFIHNRLLNLYAKSGEISHARKLFDEMTQRDNFSWNAMLSLYAKSGLVEDLR 109

Query: 90  SIFSTMLALDK------------------------------LQPDHFVFASLVKACGSLG 119
            IF  M + D                               L+P  +   S++ AC  L 
Sbjct: 110 VIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPTEYTHVSVLNACTQLL 169

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
             R GKQ+H   ++     +  V ++L D+YA+CG  + AR +FD + ++N V+W  M+S
Sbjct: 170 DLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQARRLFDRMVIRNVVTWNLMIS 229

Query: 180 AYARSGRKKDAMEIFEQAPVRNL-----------------------------------FL 204
            Y ++ + +  +++F +  V NL                                     
Sbjct: 230 GYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVC 289

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           WT ++ G  Q+  E DA   F EM  E     D   +SS+V +CA  A L  G+ +HG  
Sbjct: 290 WTIMIVGCAQNGKEEDALLLFSEMLLENAR-PDGYTISSVVSSCAKLASLYHGQVVHGKA 348

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
             +G    L +S+A+VDMY KC     A  IF  M+ ++VVSW S+I G A +GQ  E L
Sbjct: 349 FLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDLEAL 408

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
           +LY+ M+   +KP+ VTFVG++ AC H GLV +G++ F SM + +G+ P+  HY C+++L
Sbjct: 409 SLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMSDQHGLEPTPDHYACMVNL 468

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
             RSGH+D+A +LI +M  EP+   W  +LS C    + + G   A  L+ L P +   Y
Sbjct: 469 FGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKHGEMAARCLIELNPFNAVPY 528

Query: 445 ILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIF 504
           I+LSN+YA+   W+ V+ +R LM    VKK   YS+IE     H F A + +HP    I 
Sbjct: 529 IMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWIEIDNEVHKFVADDRTHPDAKIIH 588

Query: 505 ELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG-TVLRV 563
             L  L  +++  G+ P+T+ VLHD  + EK   + +HSE+LA+AYGL+K   G T +R+
Sbjct: 589 VQLNRLIRKLQEAGFSPNTNLVLHDFGEDEKLESINYHSEKLALAYGLIKKPHGVTPIRI 648

Query: 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +KN+R C DCHI MK +S IT+R +++RD+ R+HHF +GKCSC D+W
Sbjct: 649 IKNIRTCADCHIFMKFVSNITRRPVILRDSNRFHHFVEGKCSCKDYW 695



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 9/181 (4%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA+       + +H +   +G++    + + L+D Y KC + + A  +   M  R+ VSW
Sbjct: 332 CAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSW 391

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            S++  Y       + +S++  ML  + L+PD   F  ++ AC   G    GK+      
Sbjct: 392 NSMIGGYALNGQDLEALSLYENMLE-ENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSMS 450

Query: 133 ----LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRK 187
               L P  D     + +V+++ + G  + A  +  S+  + NS+ WT +LS     G  
Sbjct: 451 DQHGLEPTPDH---YACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDI 507

Query: 188 K 188
           K
Sbjct: 508 K 508


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/606 (37%), Positives = 341/606 (56%), Gaps = 49/606 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA I +L L     + N+LI  Y KC  V  A  + E +  RD +SW S+L  Y Q 
Sbjct: 347 REIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQN 406

Query: 83  NLPQKTISIFSTMLALDKLQPDH----FVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
               +   IF  M+ L  ++PD      +F +  +    L   R GK++H  ++L     
Sbjct: 407 EQQGRCFDIFKRMM-LSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHG-YILRRITP 464

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
             V                       S+ + N     A+L  YA+  R  DA +IF+   
Sbjct: 465 GGV-----------------------SLSVSN-----AILKMYAKFNRIADAEKIFKGMK 496

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            R+ + W A++ G  ++    D    F+++ ++G  + D + LS ++ +C     L+LGK
Sbjct: 497 NRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPL-DHVSLSILLTSCGRLVSLQLGK 555

Query: 259 QIHGLVIAL-------GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
           Q H +V  L         +S L I+NA++ MY+KC  I  A  +F +M RKDV SWT++I
Sbjct: 556 QFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMI 615

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G A HG A E L L++ M + G+KPN+VTF+ L+ AC+H GLV +G   F SM  DYG+
Sbjct: 616 TGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDSMYNDYGL 675

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIK-----AMPFEPD-EPTWAALLSACKHHRNTEM 425
           +PS++HY C++DL  RSG  D A++L++       P+  D    W  LL AC   +  ++
Sbjct: 676 SPSIEHYACMIDLFGRSGQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGACHASKQLDL 735

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G   A  +L L+PED ++YILL+N+YAS+ +W+   KVRK M    ++KE G S+I+ G 
Sbjct: 736 GVEAATKILELEPEDEATYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTGN 795

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H+F AG+  HP + EI+E L +L+   +R GYVP T  VLHD+++ EKE  L  HSE+
Sbjct: 796 RRHVFVAGDVYHPQRKEIYEKLAQLNYSCRRMGYVPMTELVLHDVDETEKEAILGCHSEK 855

Query: 546 LAVAYGLLK-SVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           LAV++GLL   V   V+RV+KNLRVC DCH  MK  S + KREI++RD+ R+H F+DG C
Sbjct: 856 LAVSFGLLNCGVGNGVIRVMKNLRVCEDCHSWMKFASLLEKREILLRDSQRFHLFRDGSC 915

Query: 605 SCNDFW 610
           SC D+W
Sbjct: 916 SCGDYW 921



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 197/407 (48%), Gaps = 43/407 (10%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H +IIK GL +   L N+L+  YGKC  +Q+A  L E + ++D VSW +++ A  Q   
Sbjct: 247 VHGRIIKAGL-EATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGE 305

Query: 85  PQKTISIFSTMLALD-KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
            +  + +F  ML ++  +QP+   F SL+ A   L A R G+++HA         D  + 
Sbjct: 306 GENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSIT 365

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           +SL+  Y+KC     AR +F+ + L++ +SW +ML+ Y ++ ++    +IF++       
Sbjct: 366 NSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKR------- 418

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
               ++SG+    + +   ++       G+                       GK+IHG 
Sbjct: 419 ---MMLSGIEPDSHSLTIIFNAASRDSSGL------------------IYFRRGKEIHGY 457

Query: 264 V---IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           +   I  G  S L +SNAI+ MYAK + I  A+ IF  M+ +D  SW +++ G +++ + 
Sbjct: 458 ILRRITPGGVS-LSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKF 516

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           E+ L ++ +++  G   + V+   L+ +C  +  +  G++ F +++          H   
Sbjct: 517 EDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLGKQ-FHAVVAKLFNGQDCPHQDS 575

Query: 381 LL-------DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           LL        + S+ G + +A  +   M    D  +W A+++ C HH
Sbjct: 576 LLSINNALISMYSKCGSIKDAAQVFLKME-RKDVFSWTAMITGCAHH 621



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 183/377 (48%), Gaps = 47/377 (12%)

Query: 57  AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116
           A  L +  P RD +SW++++ AY++     +   +F  M+  + LQP+ F  ASL+K   
Sbjct: 74  AQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMG-EGLQPNGFSLASLLKVSC 132

Query: 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTA 176
           S G   L +Q+H   + + F  D  ++++ + MY++CG+  +A+ VFD          T+
Sbjct: 133 STGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDE---------TS 183

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
           +L+                     ++ LW ++++  +     ++    F +M   GV   
Sbjct: 184 LLAL--------------------DILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAP 223

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
             L  +S+V AC +    + G  +HG +I  G E+   + N++V  Y KC ++  A  +F
Sbjct: 224 TELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEAT-NLWNSLVTFYGKCGNLQHASQLF 282

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEM--VSAGVKPNEVTFVGLIYACSHVGL 354
            R+ RKDVVSW ++I    Q G+ E  L L+  M  V   V+PN VTF+ L+ A S +  
Sbjct: 283 ERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSA 342

Query: 355 VGKGRK----LFKSMIE-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
           +  GR+    +F+  +E D  IT S      L+   S+   + +A  + + +    D  +
Sbjct: 343 LRCGREIHAHIFRLSLEVDTSITNS------LITFYSKCREVGKAREIFERLLLR-DIIS 395

Query: 410 WAALLSACKHHRNTEMG 426
           W ++L+   + +N + G
Sbjct: 396 WNSMLAG--YEQNEQQG 410



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/535 (22%), Positives = 237/535 (44%), Gaps = 72/535 (13%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE--MPQRDHV 70
           C+  +I L  + LH   I+ G      +    I  Y +C +++ A  + +E  +   D +
Sbjct: 132 CSTGEIGL-CRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALDIL 190

Query: 71  SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC 130
            W SI+ AY       + + +F  M+++  + P    +AS+V ACGS G  + G  VH  
Sbjct: 191 LWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVHGR 250

Query: 131 FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
            + +   +   + +SLV  Y KCG   +A  +F+ I  K+ VSW AM++A  + G  ++A
Sbjct: 251 IIKAGL-EATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENA 309

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
           + +F +                               ++ E     + +   S++ A + 
Sbjct: 310 LGLFRRM------------------------------LKVEPPVQPNRVTFLSLLSAVSG 339

Query: 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
            + L  G++IH  +  L  E    I+N+++  Y+KC ++  A++IF R+  +D++SW S+
Sbjct: 340 LSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAREIFERLLLRDIISWNSM 399

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH--VGLV--GKGRKLFKSMI 366
           + G  Q+ Q      ++  M+ +G++P+  +   +  A S    GL+   +G+++   ++
Sbjct: 400 LAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYIL 459

Query: 367 EDYGITP---SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
               ITP   SL     +L + ++   + +AE + K M    D  +W A++    + RN 
Sbjct: 460 RR--ITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMK-NRDSYSWNAMMDG--YSRNA 514

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           +    +   L  LK   P  ++ LS +  S           +L+S            ++ 
Sbjct: 515 KFEDVLMIFLDILKQGFPLDHVSLSILLTSCG---------RLVS------------LQL 553

Query: 484 GKGSHI----FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE 534
           GK  H      + G+   P +D +  +   L +   + G + D + V   ME+K+
Sbjct: 554 GKQFHAVVAKLFNGQDC-PHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKD 607



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 110/465 (23%), Positives = 193/465 (41%), Gaps = 73/465 (15%)

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
           R K A ++F+  P R++  W+AL++   +  N   AF  F +M  EG+   +   L+S++
Sbjct: 70  RLKCAQQLFDNFPNRDVISWSALIAAYSRCGNFAQAFGLFQKMMGEGLQ-PNGFSLASLL 128

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR--MRRKD 303
               +   + L +Q+HG  I  G+     I  A + MY++C  +  A+ +F    +   D
Sbjct: 129 KVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLALD 188

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACS-----HVGLVGK 357
           ++ W SII     HG   E L L+ +MVS G V P E+T+  ++ AC        G +  
Sbjct: 189 ILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMVH 248

Query: 358 GR---------KLFKSMIEDYGITPSLQHYTCLLDLLSRS---------------GHLDE 393
           GR          L+ S++  YG   +LQH + L + +SR                G  + 
Sbjct: 249 GRIIKAGLEATNLWNSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGEN 308

Query: 394 AENLIKAM-----PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE-DPSSYILL 447
           A  L + M     P +P+  T+ +LLSA         G  +  H+  L  E D S    L
Sbjct: 309 ALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSL 368

Query: 448 SNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELL 507
              Y+     + V K R++   + ++    ++ +          AG   +  +   F++ 
Sbjct: 369 ITFYSKC---REVGKAREIFERLLLRDIISWNSM---------LAGYEQNEQQGRCFDIF 416

Query: 508 TELDAEMKRRGYVPDTSS--VLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVK 565
                 M   G  PD+ S  ++ +   ++    +++   +    Y L +  PG V   V 
Sbjct: 417 K----RMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVS 472

Query: 566 NLRVCGDCHIVMKM---ISRITKREIVV-----RDATRYHHFKDG 602
           N         ++KM    +RI   E +      RD+  ++   DG
Sbjct: 473 N--------AILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDG 509


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 219/606 (36%), Positives = 335/606 (55%), Gaps = 39/606 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C         K +H  I+  G      L N L++ YGKC  +Q A  +    P+R+ 
Sbjct: 64  LRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAKSVFHITPRRNV 123

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW  ++ A+         +++   M  L+ + P+   F  L+ A  +L     G+ +H 
Sbjct: 124 FSWTIMVAAFAHNGHYMDALNLLEIM-DLEGISPNSITFIELLGAVAALSWLDRGRALHR 182

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 F  D  V + L++MYAKC      R++                          D
Sbjct: 183 RIACCGFLADIFVANCLINMYAKC------RSL-------------------------AD 211

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +FE    R++  WTALV+    +    DA   F+ M  +GV+  + +   ++V  CA
Sbjct: 212 ACSVFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGVEPTE-VTFVTVVDVCA 270

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           + AV  +G+++HG++ A   E+ + + NA+++MY KC+    A+ +F  M+RKD+++W S
Sbjct: 271 DIAVFGIGREVHGVIDARS-EANVCVGNALINMYGKCASPDEARKVFDAMQRKDIITWNS 329

Query: 310 IIVGTAQHGQAEETLALYDEMVSA-----GVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           +I    Q+G   + L +Y  M  +     G+  +++TF+G+++ACSH GLV    KL+ S
Sbjct: 330 MIAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFIGVLFACSHAGLVKDSCKLYSS 389

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           MI DYG  P+     CL+DLL R+G LDEAE  I +MP+ PD   W  LL AC  H + E
Sbjct: 390 MIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPYHPDHTIWTILLGACITHADVE 449

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
              R A+ +++L+P D  SY+ LSN+YA A  W  ++++RKLM    V K  G S IE G
Sbjct: 450 RAARAADRIMALRPTDSGSYVALSNLYALAERWDDMARMRKLMDQRGVFKMAGKSSIEIG 509

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
              H F AG+TSHP K EI+E L  ++  ++ RGYVPD  +VLH+  ++ KE+   +HSE
Sbjct: 510 GVLHEFIAGDTSHPRKREIYEELRRIEGVIRERGYVPDIKAVLHNAAREAKEKMCCFHSE 569

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           RLA+A+G++ S  GT LR++KNLRVC DCH   K+IS+ + R+I+VRDA R+H F++G C
Sbjct: 570 RLAIAFGMISSPGGTELRIMKNLRVCPDCHSATKIISKFSGRKIIVRDANRFHEFRNGSC 629

Query: 605 SCNDFW 610
           SC D+W
Sbjct: 630 SCEDYW 635



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 153/315 (48%), Gaps = 35/315 (11%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           + P   V A  ++ CGS  A   GK++H   VL  F     + + LV+MY KCG    A+
Sbjct: 53  VSPSAEVLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAK 112

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
           +VF     +N  SWT M++A+A +G   DA+ + E   +  +            S N I 
Sbjct: 113 SVFHITPRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGI------------SPNSI- 159

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
              +FIE+                +GA A  + L+ G+ +H  +   G+ + +F++N ++
Sbjct: 160 ---TFIEL----------------LGAVAALSWLDRGRALHRRIACCGFLADIFVANCLI 200

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           +MYAKC  +  A  +F  +  + V++WT+++   A +G   + L ++  M   GV+P EV
Sbjct: 201 NMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLMTLDGVEPTEV 260

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           TFV ++  C+ + + G GR++    + D     ++     L+++  +    DEA  +  A
Sbjct: 261 TFVTVVDVCADIAVFGIGREVHG--VIDARSEANVCVGNALINMYGKCASPDEARKVFDA 318

Query: 401 MPFEPDEPTWAALLS 415
           M    D  TW ++++
Sbjct: 319 MQ-RKDIITWNSMIA 332



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 95/177 (53%), Gaps = 2/177 (1%)

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
           VL+  +  C + A +  GK+IH  ++  G++S  ++ N +V+MY KC  + AAK +F   
Sbjct: 59  VLAWYLRRCGSEAAIAEGKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAKSVFHIT 118

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
            R++V SWT ++   A +G   + L L + M   G+ PN +TF+ L+ A + +  + +GR
Sbjct: 119 PRRNVFSWTIMVAAFAHNGHYMDALNLLEIMDLEGISPNSITFIELLGAVAALSWLDRGR 178

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            L +  I   G    +    CL+++ ++   L +A ++ +++        W AL++A
Sbjct: 179 ALHRR-IACCGFLADIFVANCLINMYAKCRSLADACSVFESLT-SRSVIAWTALVAA 233


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  419 bits (1076), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 222/613 (36%), Positives = 348/613 (56%), Gaps = 30/613 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIK---LGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L  C+R ++    + +HA ++K   L  + +  + + L+D Y   + V +A  + + +P+
Sbjct: 267 LPACSRLELLGVGREVHAFVLKDDDLAANSF--VASALVDMYASNEQVSHARRVFDMVPE 324

Query: 67  --RDHVSWASILTAYNQ-ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
             R    W +++  Y Q   + ++ I +FS M A     P     A ++ AC        
Sbjct: 325 HGRQLGMWNAMICGYAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTG 384

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
            + VH   V      +  V+++L+DMYA+ G  + A  +F  I L++ VSW  +++    
Sbjct: 385 KEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIV 444

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD----IVDPL 239
            G   +A ++     VR + L ++  SG            + +E     VD    + + +
Sbjct: 445 QGLISEAFQL-----VREMQLPSSAASG-----------ETMLEGDDTSVDGQRCMPNNI 488

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
            L +++  CA  A    GK+IHG  +    ES L + +A+VDMYAKC  +  A+ +F R+
Sbjct: 489 TLMTLLPGCAVLAAPARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRL 548

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKG 358
            R++V++W  +I+    HG  +E LAL+D MV+ G   PNEVTF+  + ACSH GLV +G
Sbjct: 549 PRRNVITWNVLIMAYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACSHSGLVDRG 608

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSAC 417
            +LF+ M  DYG  P+   + C++D+L R+G LDEA  +I +M P E     W+ +L AC
Sbjct: 609 LELFQGMKRDYGFEPTPYLHACVVDVLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGAC 668

Query: 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPG 477
           + HRN ++G   A  L  L+P++ S Y+LL N+Y++A +W++ ++VR +M    V KEPG
Sbjct: 669 RLHRNVKLGRIAAERLFELEPDEASHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPG 728

Query: 478 YSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKER 537
            S+IE     H F AGE++HP   ++   +  L   M+R GYVPDTS VLHD+++ EK  
Sbjct: 729 CSWIELDGAIHRFMAGESAHPESAQVHAHMDALWERMRREGYVPDTSCVLHDVDEAEKAA 788

Query: 538 QLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYH 597
            L +HSE+LA+A+GLL++ PG  +RV KNLRVC DCH   K ISR+  REIV+RD  R+H
Sbjct: 789 MLRYHSEKLAIAFGLLRAPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFH 848

Query: 598 HFKDGKCSCNDFW 610
           HF+DG CSC D+W
Sbjct: 849 HFRDGTCSCGDYW 861



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 113/432 (26%), Positives = 187/432 (43%), Gaps = 73/432 (16%)

Query: 23  KTLHAQIIKLGLHQYG----PLPNTLIDAYGKCDLVQYAHHLL--EEMPQRDHVSWASIL 76
           +  HA  +K G    G    P  N L+  Y +  LV  A  L         D V+W +++
Sbjct: 174 REAHAFALKHGFLDKGRERFPF-NALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMI 232

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
           +   Q    ++ + +   M+AL  ++PD   FAS + AC  L    +G++VHA FVL   
Sbjct: 233 SLLVQGGRCEEAVQVLYDMVAL-GVRPDGVTFASALPACSRLELLGVGREVHA-FVLK-- 288

Query: 137 CDDDV-----VKSSLVDMYAKCGLPNNARAVFDSIKL--KNSVSWTAMLSAYAR-SGRKK 188
            DDD+     V S+LVDMYA     ++AR VFD +    +    W AM+  YA+  G  +
Sbjct: 289 -DDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGGMDE 347

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A+E+F                    SR E +A  +  E             ++ ++ AC
Sbjct: 348 EAIELF--------------------SRMEAEAGCAPSET-----------TMAGVLPAC 376

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A   V    + +HG V+     S  F+ NA++DMYA+   +  A  IF  +  +D+VSW 
Sbjct: 377 ARSEVFTGKEAVHGYVVKRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWN 436

Query: 309 SIIVGTAQHGQAEETLALYDEM-----VSAG---------------VKPNEVTFVGLIYA 348
           ++I G    G   E   L  EM      ++G                 PN +T + L+  
Sbjct: 437 TLITGCIVQGLISEAFQLVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPG 496

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           C+ +    +G+++    +  + +   L   + L+D+ ++ G L  A  +   +P   +  
Sbjct: 497 CAVLAAPARGKEIHGYAVR-HALESDLAVGSALVDMYAKCGCLALARAVFDRLP-RRNVI 554

Query: 409 TWAALLSACKHH 420
           TW  L+ A   H
Sbjct: 555 TWNVLIMAYGMH 566



 Score = 41.6 bits (96), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 126/304 (41%), Gaps = 60/304 (19%)

Query: 258 KQIHG--LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVG 313
           + IHG  L  AL +     +SNA++  YA+C D+ AA  +F       +D VS+ S+I  
Sbjct: 68  RAIHGASLRRALLHRPTPAVSNALLTAYARCGDLDAALALFAATPPDLRDAVSYNSLISA 127

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV------------------GLV 355
                +    L    +M+ A  + +  T V ++ ACSH+                  G +
Sbjct: 128 LCLFRRWGHALDALRDML-ADHEVSSFTLVSVLLACSHLADQGHRLGREAHAFALKHGFL 186

Query: 356 GKGRKLFK-----SMIEDYGITPSLQH--------------YTCLLDLLSRSGHLDEAEN 396
            KGR+ F      SM    G+    Q               +  ++ LL + G  +EA  
Sbjct: 187 DKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNTMISLLVQGGRCEEAVQ 246

Query: 397 LIK---AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED--PSSYI--LLSN 449
           ++    A+   PD  T+A+ L AC       +G  V  H   LK +D   +S++   L +
Sbjct: 247 VLYDMVALGVRPDGVTFASALPACSRLELLGVGREV--HAFVLKDDDLAANSFVASALVD 304

Query: 450 VYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTE 509
           +YAS    + VS  R+   V ++  E G    + G  + +         + +E  EL + 
Sbjct: 305 MYASN---EQVSHARR---VFDMVPEHGR---QLGMWNAMICGYAQHGGMDEEAIELFSR 355

Query: 510 LDAE 513
           ++AE
Sbjct: 356 MEAE 359


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 228/607 (37%), Positives = 333/607 (54%), Gaps = 36/607 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE--E 63
           + H L+ C         + +HAQ+ +LG      + N LI  Y KC  +  A  + E   
Sbjct: 122 FPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLP 181

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           +P+R  VSW +I++AY Q   P + + IFS M  +D ++PD     S++ A   L     
Sbjct: 182 LPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMD-VKPDCVALVSVLNAFTCLQDLEQ 240

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G+ +HA  +      +  +  SL  MYAKCG    A+ +FD +K                
Sbjct: 241 GRSIHASVMKMGLETEPDLLISLNTMYAKCGQVATAKILFDKMK---------------- 284

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
                        +P  NL LW A++SG  ++    DA   F EM  + V   D + ++S
Sbjct: 285 -------------SP--NLILWNAMISGYAKNGFAKDAIDLFHEMINKDVR-PDTISITS 328

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
            + ACA    LE  + +   V    Y   +FIS+A++DM+AKC  +  A+ +F R   +D
Sbjct: 329 AISACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRD 388

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           VV W+++IVG   HGQA E ++LY  M   GV PN+VTF+GL+ AC+H G+V +G   F 
Sbjct: 389 VVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFN 448

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
            M  D+ I P  QHY C++DLL R+GHLD+A  +IK MP +P    W ALLSACK HR+ 
Sbjct: 449 RM-ADHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHV 507

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           E+G   A  L S+ P +   Y+ LSN+YA+A +W  V++VR  M    + K+ G S++E 
Sbjct: 508 ELGKYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEV 567

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
                 F  G+ SHP  +EI   +  +++ +K  G+V +  + LHD+  +E E  L  HS
Sbjct: 568 RGRLEGFRVGDKSHPRYEEIERQVEWIESRLKEGGFVANKDASLHDLNDEEAEETLCSHS 627

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           ER+ +AYGL+ +  GT LR+ KNLR C +CH   K+IS++  REIVVRD  R+HHFKDG 
Sbjct: 628 ERITIAYGLISTPQGTTLRITKNLRACVNCHAATKLISKLVGREIVVRDTNRFHHFKDGV 687

Query: 604 CSCNDFW 610
           CSC D+W
Sbjct: 688 CSCGDYW 694



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 124/244 (50%), Gaps = 5/244 (2%)

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
           T ++ A +  G    A ++F+  P   +F W A++ G  ++ +  DA   + +M+   V 
Sbjct: 57  TKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVS 116

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
             D      ++ AC   + L++G+ +H  V  LG+E+ +F+ N ++ +YAKC  +  A+ 
Sbjct: 117 -PDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCART 175

Query: 295 IFGR--MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
           +F    +  + +VSWT+I+   AQ+G+  E L ++ +M    VKP+ V  V ++ A + +
Sbjct: 176 VFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCL 235

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
             + +GR +  S+++  G+         L  + ++ G +  A+ L   M   P+   W A
Sbjct: 236 QDLEQGRSIHASVMK-MGLETEPDLLISLNTMYAKCGQVATAKILFDKMK-SPNLILWNA 293

Query: 413 LLSA 416
           ++S 
Sbjct: 294 MISG 297



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 2/160 (1%)

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           +QIH  ++ LG +   F+   ++   +   DI  A+ +F  + R  V  W +II G +++
Sbjct: 38  RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRN 97

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
              ++ L +Y +M  A V P+  TF  L+ AC  +  +  GR    + +   G    +  
Sbjct: 98  NHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGR-FVHAQVFRLGFEADVFV 156

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPF-EPDEPTWAALLSA 416
              L+ L ++   L  A  + + +P  E    +W A++SA
Sbjct: 157 QNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSA 196


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 210/599 (35%), Positives = 331/599 (55%), Gaps = 40/599 (6%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           C RH     ++ +H  ++K G      + N+LI  YGKCD  + +  + +EMP ++ VSW
Sbjct: 22  CLRH-FEFGIR-IHQDVVKFGYQSQVFISNSLITMYGKCDKYELSRQVFDEMPDKNAVSW 79

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
           ++I+ A  Q +  ++  S+F  ML+ +  +P      +++ A   + +      V+   V
Sbjct: 80  SAIIGACLQDDRCKEGFSLFRQMLS-EGSRPSR---GAILNAMACVRSHEEADDVYRVVV 135

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
            +    D  V+S+   M+A+CG    AR +FD I  K+ V+W   + AY ++    +A+ 
Sbjct: 136 ENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALG 195

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           + +Q  ++ +F                                 D + L  ++ AC+  A
Sbjct: 196 LLKQMMLQGIF--------------------------------PDAITLLGVIRACSTLA 223

Query: 253 VLELGKQIHGLVI-ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
             +L   +HG++     Y   L +  A++D+Y KC  +  A+ +F  M+ +++++W+++I
Sbjct: 224 SFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMI 283

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G   HG   E L L+D+M  A VKP+ +TFV ++ ACSH GLV +G + F SM  D+G+
Sbjct: 284 SGYGMHGWGREALNLFDQM-KASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGV 342

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
           TP  +HY C++D+L R+G LDEA + I+ MP  P+   W ALL AC+ H N ++   VA 
Sbjct: 343 TPRPEHYACMVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVAR 402

Query: 432 HLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFY 491
            L  L P +   Y++L N+Y      +    +R LM    VKK  GYS IE     + F 
Sbjct: 403 ALFDLDPHNAGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKLYAFV 462

Query: 492 AGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYG 551
           AG+ SHP  D I+  L  L   +++ GY PD + VLHD++++ KE  L+ HSE+LA+ +G
Sbjct: 463 AGDRSHPQTDLIYSELERLMDRIRQEGYTPDINFVLHDVDEETKESMLYLHSEKLAIVFG 522

Query: 552 LLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           LL   PG+V+R+ KNLRVCGDCH   K IS++T REIVVRDA R+HHFK+G CSC D+W
Sbjct: 523 LLNLGPGSVIRIRKNLRVCGDCHTATKFISKVTGREIVVRDAHRFHHFKNGACSCRDYW 581



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 137/320 (42%), Gaps = 36/320 (11%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           +QPD+F F  ++KAC  L     G ++H   V   +     + +SL+ MY KC     +R
Sbjct: 6   IQPDNFTFPFIIKACSCLRHFEFGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKYELSR 65

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            VFD +  KN+VSW+A++ A  +  R K+   +F Q           L  G   SR    
Sbjct: 66  QVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQ----------MLSEGSRPSR---- 111

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
                                 +I+ A A     E    ++ +V+  G +    + +A  
Sbjct: 112 ---------------------GAILNAMACVRSHEEADDVYRVVVENGLDFDQSVQSAAA 150

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
            M+A+C  +  A+ +F  +  KD+V+W + I    +     E L L  +M+  G+ P+ +
Sbjct: 151 GMFARCGRVEVARKLFDGIMSKDLVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAI 210

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           T +G+I ACS +        +   +   +     L   T L+DL  + G L  A  +   
Sbjct: 211 TLLGVIRACSTLASFQLAHIVHGIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDG 270

Query: 401 MPFEPDEPTWAALLSACKHH 420
           M  E +  TW+A++S    H
Sbjct: 271 MQ-ERNIITWSAMISGYGMH 289


>gi|32487551|emb|CAE03754.1| OSJNBa0013K16.3 [Oryza sativa Japonica Group]
          Length = 865

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/606 (36%), Positives = 335/606 (55%), Gaps = 14/606 (2%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEM 64
           Y   L  CAR       K LHA++I+  L Q  P + + LI+ Y KC   + A  +   +
Sbjct: 273 YTSSLTACARLFSLGWGKQLHAKVIR-SLPQIDPYVASALIELYAKCGSFKEAKRVFNSL 331

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
             R+ VSW  ++    Q     K++ +F+ M A + +  D F  A+L+  C +     LG
Sbjct: 332 QDRNSVSWTVLIGGSLQYECFSKSVELFNQMRA-ELMAIDQFALATLISGCFNRMDLCLG 390

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           +Q+H+  + S      VV +SL+ +YAKCG   NA  VF S+  ++ VSWT+M++AY++ 
Sbjct: 391 RQLHSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFVFSSMSERDIVSWTSMITAYSQI 450

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G    A E F+    RN   W A++   +Q   E D    +  M  +     D +   ++
Sbjct: 451 GNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGLKMYSAMLSQKDVTPDWVTYVTL 510

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
              CA+    +LG QI G  +  G    + ++NA + MY+KC  I  A+ +F  +  KDV
Sbjct: 511 FRGCADIGANKLGDQIIGHTVKAGLILNVSVANAAITMYSKCGRISEAQKLFDLLNGKDV 570

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           VSW ++I G +QHG  ++    +D+M+S G KP+ +++V ++  CSH GLV +G+  F  
Sbjct: 571 VSWNAMITGYSQHGMGKQAAKTFDDMLSKGAKPDYISYVAVLSGCSHSGLVQEGKLYFDM 630

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           M   +GI+P L+H++C++DLL R+GHL EA++LI  MP +P    W ALLSACK H N E
Sbjct: 631 MTRVHGISPGLEHFSCMVDLLGRAGHLTEAKDLIDKMPMKPTAEVWGALLSACKIHGNDE 690

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +    A H+  L   D  SY+LL+ +Y+ A      ++VRKLM    +KK PGYS++E  
Sbjct: 691 LAELAAKHVFELDSPDSGSYMLLAKIYSDAGKSDDSAQVRKLMRDKGIKKNPGYSWMEVE 750

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
              H+F A + SHP    I   + EL  ++   GYV           + E  R    HSE
Sbjct: 751 NKVHVFKADDVSHPQVIAIRNKMDELMEKIAHLGYV-----------RTESPRSEIHHSE 799

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           +LAVA+G++       + ++KNLR+CGDCH V+K+IS +T RE V+RD  R+HHFK G C
Sbjct: 800 KLAVAFGIMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTDREFVIRDGVRFHHFKSGSC 859

Query: 605 SCNDFW 610
           SC D+W
Sbjct: 860 SCGDYW 865



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 132/502 (26%), Positives = 222/502 (44%), Gaps = 66/502 (13%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL-------- 61
           LR C         + LH +++ +GL     L NTL+ AY  C  +  A  LL        
Sbjct: 11  LRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADIKEPN 70

Query: 62  ------------------------EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLA 97
                                   + MP+RD  SW ++++ Y QA      +  F +M  
Sbjct: 71  VITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFVSMHR 130

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
                P+ F F  ++K+CG+LG   L  Q+   F    F  D  V+++LVDM+ +CG  +
Sbjct: 131 SGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRCGYVD 190

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
            A  +F  I+        +ML+ YA+      A+E FE    R++  W  +++ L QS  
Sbjct: 191 FASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALSQSGR 250

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             +A    +EM R+GV + D    +S + ACA    L  GKQ+H  VI    +   ++++
Sbjct: 251 VREALGLVVEMHRKGVRL-DSTTYTSSLTACARLFSLGWGKQLHAKVIRSLPQIDPYVAS 309

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           A++++YAKC     AK +F  ++ ++ VSWT +I G+ Q+    +++ L+++M +  +  
Sbjct: 310 ALIELYAKCGSFKEAKRVFNSLQDRNSVSWTVLIGGSLQYECFSKSVELFNQMRAELMAI 369

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE-- 395
           ++     LI  C +   +  GR+L  S+    G   ++     L+ L ++ G L  AE  
Sbjct: 370 DQFALATLISGCFNRMDLCLGRQL-HSLCLKSGHNRAIVVSNSLISLYAKCGDLQNAEFV 428

Query: 396 -----------------------NLIKAMPF-----EPDEPTWAALLSACKHHRNTEMGT 427
                                  N+IKA  F       +  TW A+L A   H   E G 
Sbjct: 429 FSSMSERDIVSWTSMITAYSQIGNIIKAREFFDGMATRNAITWNAMLGAYIQHGAEEDGL 488

Query: 428 RVANHLLSLKPEDPS--SYILL 447
           ++ + +LS K   P   +Y+ L
Sbjct: 489 KMYSAMLSQKDVTPDWVTYVTL 510



 Score =  131 bits (330), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 155/343 (45%), Gaps = 38/343 (11%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDS-I 166
            A  +++CGS GA    + +H   V         ++++L+  Y  CG  ++AR +  + I
Sbjct: 7   LADALRSCGSRGALAGARALHGRLVTVGLASAVFLQNTLLHAYLSCGALSDARRLLRADI 66

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
           K  N ++   M++ YA+ G   DA E+F++ P R++  W  L+SG  Q+R  +D   +F+
Sbjct: 67  KEPNVITHNIMMNGYAKQGSLSDAEELFDRMPRRDVASWNTLMSGYFQARRFLDGLETFV 126

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            M R G  + +      ++ +C      EL  Q+ GL     +     +  A+VDM+ +C
Sbjct: 127 SMHRSGDSLPNAFTFCCVMKSCGALGCRELAPQLLGLFWKFDFWGDPDVETALVDMFVRC 186

Query: 287 SDIIAAKDIFGRMRR-------------------------------KDVVSWTSIIVGTA 315
             +  A  +F ++ R                               +DVVSW  +I   +
Sbjct: 187 GYVDFASRLFSQIERPTIFCRNSMLAGYAKLYGIDHAIEYFEDMAERDVVSWNMMIAALS 246

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
           Q G+  E L L  EM   GV+ +  T+   + AC+ +  +G G++L   +I      P +
Sbjct: 247 QSGRVREALGLVVEMHRKGVRLDSTTYTSSLTACARLFSLGWGKQLHAKVIRSL---PQI 303

Query: 376 QHY--TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             Y  + L++L ++ G   EA+ +  ++  + +  +W  L+  
Sbjct: 304 DPYVASALIELYAKCGSFKEAKRVFNSLQ-DRNSVSWTVLIGG 345


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/602 (36%), Positives = 341/602 (56%), Gaps = 35/602 (5%)

Query: 10  LRVCARH-QIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L+ CAR   + L +K +H+ ++K G      +  +L+  Y KCD    A  + +++P ++
Sbjct: 121 LKACARKLDVRLGLK-IHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKN 179

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW +I+T Y  +   ++ I  F  +L +  L+PD F    ++ AC  LG    G+ + 
Sbjct: 180 VVSWTAIITGYISSGHFREAIGAFKKLLEMG-LKPDSFSLVKVLAACARLGDCTSGEWID 238

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
                S    +  V +SL+DMY KCG    A  +F ++  K+ VSW+ M+  YA +G  +
Sbjct: 239 RYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQ 298

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            A+++F Q                +QS N     Y+ +                 ++ AC
Sbjct: 299 QALDLFFQ----------------MQSENLKPDCYTMV----------------GVLSAC 326

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A    L+LG     L+    + S   +  A++DMY+KC  +  A +IF  M+RKD V W 
Sbjct: 327 ATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWN 386

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           +++VG + +G A+   +L+  +   G++P+E TF+GL+  C+H G V +GR+ F +M   
Sbjct: 387 AMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRV 446

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           + +TPS++HY C++DLL R+G L+EA  LI  MP +P+   W ALL  CK H++T +  +
Sbjct: 447 FSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQ 506

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
           V   L+ L+P +  +Y+ LSN+Y+    W+   K+R  M   +++K    S+IE     H
Sbjct: 507 VLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVH 566

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F  G+ SH L ++I+  L EL  E+K  G+VP T  VL D+E++EKE  L +HSE+LAV
Sbjct: 567 EFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAV 626

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+GL+ S P  V+RVVKNLRVCGDCH  +K+IS+ITKREI++RD  R+H F DG CSC D
Sbjct: 627 AFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRD 686

Query: 609 FW 610
           +W
Sbjct: 687 YW 688



 Score =  118 bits (296), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 3/224 (1%)

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F Q    N+FLW  ++ GLV      DA + +  MR  G  + +   +  ++ ACA   
Sbjct: 70  VFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGF-LPNNFTIPFVLKACARKL 128

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
            + LG +IH L++  GY+  +F+  +++ +Y KC +   A  +F  +  K+VVSWT+II 
Sbjct: 129 DVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIIT 188

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G    G   E +  + +++  G+KP+  + V ++ AC+ +G    G +     I D G+ 
Sbjct: 189 GYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSG-EWIDRYISDSGMG 247

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            ++   T LLD+  + G+L+ A  +  AMP E D  +W+ ++  
Sbjct: 248 RNVFVATSLLDMYVKCGNLERANLIFSAMP-EKDIVSWSTMIQG 290


>gi|147771387|emb|CAN76239.1| hypothetical protein VITISV_016538 [Vitis vinifera]
          Length = 503

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 212/536 (39%), Positives = 317/536 (59%), Gaps = 33/536 (6%)

Query: 75  ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134
           ++  Y   N  +K + +FS ++     + D    A+  KACG L     GKQ+HA  + +
Sbjct: 1   MMFGYIIGNDGKKALELFS-LIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKA 59

Query: 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
            F  D  V S ++DMY KCG   NA  VF+ I   + V+W                    
Sbjct: 60  GFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAW-------------------- 99

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
                      T+++SG V + NE  A   +  MR+  V + D    ++++ A +    L
Sbjct: 100 -----------TSMISGCVDNGNEDQALRIYHRMRQSRV-MPDEYTFATLIKASSCVTAL 147

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
           E G+Q+H  VI L   S  F+  ++VDMYAKC +I  A  +F +M  +++  W +++VG 
Sbjct: 148 EQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGL 207

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
           AQHG AEE + L+  M S G++P+ V+F+G++ ACSH GL  +  +   SM  DYGI P 
Sbjct: 208 AQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPE 267

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           ++HY+CL+D L R+G + EA+ +I+ MPF+       ALL AC+   + E G RVA  L 
Sbjct: 268 IEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQGDVEXGKRVAARLF 327

Query: 435 SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGE 494
           +L+P D ++Y+LLSN+YA+A  W  V+  RK+M    VKK+PG+S+I+     H+F   +
Sbjct: 328 ALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSWIDVKNMLHLFVVDD 387

Query: 495 TSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLK 554
            SHP  D I++ + E+   ++  GYVPDT  VL D+E +EKER L++HSE+LA+AYGL+ 
Sbjct: 388 RSHPQADIIYDKVEEMMKTIREDGYVPDTEFVLLDVEDEEKERSLYYHSEKLAIAYGLIS 447

Query: 555 SVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +   T +RV+KNLRVCGDCH  +K IS++ +REIV+RDA R+HHF+DG CSC D+W
Sbjct: 448 TPASTTIRVIKNLRVCGDCHNAIKYISKVFEREIVLRDANRFHHFRDGVCSCGDYW 503



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/173 (30%), Positives = 88/173 (50%), Gaps = 1/173 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HA  IK G      + + ++D Y KC  +  A  +   +   D V+W S+++     
Sbjct: 50  KQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDN 109

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + I+  M    ++ PD + FA+L+KA   + A   G+Q+HA  +      D  V
Sbjct: 110 GNEDQALRIYHRMRQ-SRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFV 168

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
            +SLVDMYAKCG   +A  +F  + ++N   W AML   A+ G  ++A+ +F+
Sbjct: 169 GTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFK 221



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 76/165 (46%), Gaps = 8/165 (4%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHA +IKL       +  +L+D Y KC  ++ A+ L ++M  R+   W ++L    Q 
Sbjct: 151 RQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQH 210

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ-VHAC---FVLSPFCD 138
              ++ +++F +M +   ++PD   F  ++ AC   G T    + +H+    + + P  +
Sbjct: 211 GNAEEAVNLFKSMKS-HGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIE 269

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
                S LVD   + GL   A  V +++  K S S    L    R
Sbjct: 270 H---YSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACR 311


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/601 (36%), Positives = 331/601 (55%), Gaps = 32/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +R CA        K +H   +K G+     + + L D Y KC  +  A  + EEMP +D 
Sbjct: 113 IRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDE 172

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++  Y++    ++ +  F  M+  +++  D  V  S + ACG+L A + G+ VH+
Sbjct: 173 VSWTAMIDGYSKIGEFEEALLAFKKMID-EEVTIDQHVLCSTLGACGALKACKFGRSVHS 231

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V   F  D  V ++L DMY+K G   +A  VF                          
Sbjct: 232 SVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGI------------------------ 267

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
                  +  RN+  +T L+ G V++         F+E+RR+G++  +    SS++ ACA
Sbjct: 268 ------DSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIE-PNEFTFSSLIKACA 320

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           N A LE G Q+H  V+ + ++   F+S+ +VDMY KC  +  A   F  +     ++W S
Sbjct: 321 NQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNS 380

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           ++    QHG  ++ +  ++ MV  GVKPN +TF+ L+  CSH GLV +G   F SM + Y
Sbjct: 381 LVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTY 440

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G+ P  +HY+C++DLL R+G L EA+  I  MPFEP+   W + L AC+ H + EMG   
Sbjct: 441 GVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLA 500

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  L+ L+P++  + +LLSN+YA+   W+ V  VR  M    VKK PGYS+++ G  +H+
Sbjct: 501 AEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDVGYKTHV 560

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F A + SH  K  I+E L  L  ++K  GYVP T SV  DM+   KE+ L  HSER+AVA
Sbjct: 561 FGAEDWSHXRKSAIYEKLDXLLDQIKAAGYVPXTDSVPLDMDDXMKEKLLHRHSERIAVA 620

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + L+    G  + V KNLRVC DCH  +K IS++T R+I+VRD +R+HHF DG CSC D+
Sbjct: 621 FALISMPIGKPIIVKKNLRVCVDCHSAIKFISKVTGRKIIVRDNSRFHHFTDGSCSCGDY 680

Query: 610 W 610
           W
Sbjct: 681 W 681



 Score =  198 bits (504), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 128/415 (30%), Positives = 214/415 (51%), Gaps = 38/415 (9%)

Query: 8   HRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR 67
           H ++  A+ +     K LHA +I  G      L N L++ Y KC  + +A  L + MPQR
Sbjct: 10  HVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQR 69

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           + VSW ++++  +Q +   + I  F  M    ++ P  F F+S ++AC SLG+  +GKQ+
Sbjct: 70  NLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEV-PTQFAFSSAIRACASLGSIEMGKQM 128

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           H   +      +  V S+L DMY+KCG   +A  VF+ +  K+ VSWTAM+  Y++ G  
Sbjct: 129 HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGE- 187

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
                 FE+                        A  +F +M  E V I D  VL S +GA
Sbjct: 188 ------FEE------------------------ALLAFKKMIDEEVTI-DQHVLCSTLGA 216

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG-RMRRKDVVS 306
           C      + G+ +H  V+ LG+ES +F+ NA+ DMY+K  D+ +A ++FG     ++VVS
Sbjct: 217 CGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVS 276

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           +T +I G  +  Q E+ L+++ E+   G++PNE TF  LI AC++   + +G +L   ++
Sbjct: 277 YTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVM 336

Query: 367 E-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           + ++   P +   + L+D+  + G L+ A      +  +P E  W +L+S    H
Sbjct: 337 KINFDEDPFVS--SILVDMYGKCGLLEHAIQAFDEIG-DPTEIAWNSLVSVFGQH 388



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 170/374 (45%), Gaps = 69/374 (18%)

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
           R GKQ+HA  + + +     + + LV+MY+KCG  ++A                      
Sbjct: 22  RRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHA---------------------- 59

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
                    +++F+  P RNL  WTA++SGL Q+    +A  +F  MR  G ++      
Sbjct: 60  ---------LKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICG-EVPTQFAF 109

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           SS + ACA+   +E+GKQ+H L +  G  S LF+ + + DMY+KC  +  A  +F  M  
Sbjct: 110 SSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPC 169

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           KD VSWT++I G ++ G+ EE L  + +M+   V  ++      + AC  +     GR +
Sbjct: 170 KDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSV 229

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL------------------------ 397
             S+++  G    +     L D+ S++G ++ A N+                        
Sbjct: 230 HSSVVK-LGFESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETE 288

Query: 398 -----------IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK-PEDPSSYI 445
                      ++    EP+E T+++L+ AC +    E GT++   ++ +   EDP    
Sbjct: 289 QIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSS 348

Query: 446 LLSNVYASAAMWQH 459
           +L ++Y    + +H
Sbjct: 349 ILVDMYGKCGLLEH 362



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 98/180 (54%), Gaps = 2/180 (1%)

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           D   L+ ++   A    L  GKQ+H L+I  GY  C F++N +V+MY+KC ++  A  +F
Sbjct: 4   DTNALAHVIQTYAKTKRLRRGKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLF 63

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
             M ++++VSWT++I G +Q+ +  E +  +  M   G  P +  F   I AC+ +G + 
Sbjct: 64  DTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIE 123

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G+++   +   +GI   L   + L D+ S+ G + +A  + + MP + DE +W A++  
Sbjct: 124 MGKQM-HCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCK-DEVSWTAMIDG 181


>gi|116792842|gb|ABK26521.1| unknown [Picea sitchensis]
          Length = 370

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 186/370 (50%), Positives = 257/370 (69%)

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           ++ I+ ACA+ A LE GKQ+H  +I +G+E  + +SN +VDMY KC  I  A+++F ++ 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
             DV SW ++I G AQHG  +E + L+++M+  GVKPN++TFV ++  CSH GLV +GR 
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            F SM  D+GI+P  +HY+C++DL  R+G LDEA N I  MP EP+   W +LL AC+ H
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
            N E+  R    L+ L PE+P +Y+LLSN+YA+A  W    KVRK+M    VKKEPG S+
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSNIYAAAGRWDDAGKVRKMMKDRSVKKEPGCSW 240

Query: 481 IEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLF 540
           IE     H F  G++SHP  +EI+E L  L  +MK  GY+P+T+ VLHD+E+++KE  L 
Sbjct: 241 IEVQNKVHPFIVGDSSHPQIEEIYETLETLTLQMKAAGYIPNTNFVLHDVEEEQKEWILG 300

Query: 541 WHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFK 600
            HSE+LA+A+G++ + PGT +RVVKNLRVCGDCH   K ISRI  REIV+RD  R+HHFK
Sbjct: 301 HHSEKLAIAFGIISTPPGTTIRVVKNLRVCGDCHTATKFISRIVSREIVLRDTHRFHHFK 360

Query: 601 DGKCSCNDFW 610
           DG+CSC D+W
Sbjct: 361 DGQCSCGDYW 370



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 122/288 (42%), Gaps = 63/288 (21%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
            A +++AC S+ A   GKQVHA  +   F  D  V + LVDMY KCG   +A+ VF  + 
Sbjct: 1   MAGILRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLL 60

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQ----APVRNLFLWTALVSG------LVQSRN 217
             +  SW AM+S  A+ G  K+A+ +FEQ        N   +  ++SG      + + RN
Sbjct: 61  EPDVASWNAMISGLAQHGCGKEAVLLFEQMLQTGVKPNQITFVVVLSGCSHAGLVDEGRN 120

Query: 218 EIDA-------------------FYSFIEMRREGVDIVDPL-------VLSSIVGACANF 251
             D+                    +       E ++ ++ +       V  S++GAC   
Sbjct: 121 YFDSMTRDHGISPKAEHYSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 252 AVLELGKQIHGLVIALGYE---SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV---- 304
             +EL ++    +I L  E   + + +SN    +YA       A  +   M+ + V    
Sbjct: 181 GNIELAERAVEQLIELTPENPGTYVLLSN----IYAAAGRWDDAGKVRKMMKDRSVKKEP 236

Query: 305 -VSWTSI-------IVGTAQHGQAE------ETLALYDEMVSAGVKPN 338
             SW  +       IVG + H Q E      ETL L  +M +AG  PN
Sbjct: 237 GCSWIEVQNKVHPFIVGDSSHPQIEEIYETLETLTL--QMKAAGYIPN 282



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 85/192 (44%), Gaps = 9/192 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR CA        K +HA IIK+G      + N L+D YGKC  ++ A  +  ++ + D 
Sbjct: 5   LRACASVAALEQGKQVHADIIKIGFELDVSVSNGLVDMYGKCGRIEDAQEVFSKLLEPDV 64

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW ++++   Q    ++ + +F  ML    ++P+   F  ++  C   G    G+    
Sbjct: 65  ASWNAMISGLAQHGCGKEAVLLFEQMLQTG-VKPNQITFVVVLSGCSHAGLVDEGRNYFD 123

Query: 130 CFV----LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARS 184
                  +SP  +     S +VD++ + G  + A    + + ++ N+  W ++L A    
Sbjct: 124 SMTRDHGISPKAEH---YSCMVDLFGRAGCLDEALNFINQMPVEPNASVWGSLLGACRVH 180

Query: 185 GRKKDAMEIFEQ 196
           G  + A    EQ
Sbjct: 181 GNIELAERAVEQ 192


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/593 (36%), Positives = 331/593 (55%), Gaps = 34/593 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C   ++ +  + +HA I++        + NTL++ Y KC  ++ A  + E+MPQRD 
Sbjct: 67  LKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQRDF 126

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W ++++ Y+Q + P   +  F+ ML      P+ F  +S++KA  +      G Q+H 
Sbjct: 127 VTWTTLISGYSQHDRPCDALLFFNQMLRFG-YSPNEFTLSSVIKAAAAERRGCCGHQLHG 185

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 FC              KCG  +N                +A+L  Y R G   D
Sbjct: 186 ------FC-------------VKCGFDSNVHVG------------SALLDLYTRYGLMDD 214

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F+    RN   W AL++G  +      A   F  M R+G         +S+ GAC+
Sbjct: 215 AQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFR-PSHFSYASLFGACS 273

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +   LE GK +H  +I  G +   F  N ++DMYAK   I  A+ IF R+ ++DVVSW S
Sbjct: 274 STGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNS 333

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           ++   AQHG  +E +  ++EM   G++PNE++F+ ++ ACSH GL+ +G   ++ M +D 
Sbjct: 334 LLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVLTACSHSGLLDEGWHYYELMKKD- 392

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI P   HY  ++DLL R+G L+ A   I+ MP EP    W ALL+AC+ H+NTE+G   
Sbjct: 393 GIVPEAWHYVTVVDLLGRAGDLNRALRFIEEMPIEPTAAIWKALLNACRMHKNTELGAYA 452

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A H+  L P+DP  +++L N+YAS   W   ++VRK M    VKKEP  S++E     H+
Sbjct: 453 AEHVFELDPDDPGPHVILYNIYASGGRWNDAARVRKKMKESGVKKEPACSWVEIENAIHM 512

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F A +  HP ++EI     E+ A++K  GYVPDTS V+  ++Q+E+E  L +HSE++A+A
Sbjct: 513 FVANDERHPQREEIARKWEEVLAKIKELGYVPDTSHVIVHVDQQEREVNLQYHSEKIALA 572

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           + LL + PG+ + + KN+RVCGDCH  +K+ S++  REI+VRD  R+HHFKD 
Sbjct: 573 FALLNTPPGSTIHIKKNIRVCGDCHTAIKLASKVVGREIIVRDTNRFHHFKDA 625



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 152/317 (47%), Gaps = 34/317 (10%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D   + +L+K C        G+ VHA  + S F  D V+ ++L++MYAKCG    AR VF
Sbjct: 59  DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           + +  ++ V+WT ++S Y++  R  DA+  F Q                           
Sbjct: 119 EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQ--------------------------- 151

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
               M R G    +   LSS++ A A       G Q+HG  +  G++S + + +A++D+Y
Sbjct: 152 ----MLRFGYS-PNEFTLSSVIKAAAAERRGCCGHQLHGFCVKCGFDSNVHVGSALLDLY 206

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
            +   +  A+ +F  +  ++ VSW ++I G A+    E+ L L+  M+  G +P+  ++ 
Sbjct: 207 TRYGLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYA 266

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            L  ACS  G + +G+ +   MI+      +    T LLD+ ++SG + +A  +   +  
Sbjct: 267 SLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNT-LLDMYAKSGSIHDARKIFDRLA- 324

Query: 404 EPDEPTWAALLSACKHH 420
           + D  +W +LL+A   H
Sbjct: 325 KRDVVSWNSLLTAYAQH 341



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 98/188 (52%), Gaps = 2/188 (1%)

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           D    ++++  C  F +L  G+ +H  ++   +   + + N +++MYAKC  +  A+ +F
Sbjct: 59  DRRFYNTLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVF 118

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
            +M ++D V+WT++I G +QH +  + L  +++M+  G  PNE T   +I A +      
Sbjct: 119 EKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC 178

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G +L    ++  G   ++   + LLDL +R G +D+A+ +  A+    D  +W AL++ 
Sbjct: 179 CGHQLHGFCVK-CGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRND-VSWNALIAG 236

Query: 417 CKHHRNTE 424
                 TE
Sbjct: 237 HARRSGTE 244


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 211/598 (35%), Positives = 329/598 (55%), Gaps = 34/598 (5%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           C+   + L  + LH   IK    +   L N L+D Y K   +  A  + E M +R  VSW
Sbjct: 261 CSNTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSW 320

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            S++  Y +  L   ++ +F  M   + + PD F   +++ AC   G    GK VH    
Sbjct: 321 TSMIAGYAREGLSDMSVRLFHEM-EKEGISPDIFTITTILHACACTGLLENGKDVHNYIK 379

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
            +    D  V ++L+DMYAKC                               G   DA  
Sbjct: 380 ENKMQSDLFVSNALMDMYAKC-------------------------------GSMGDAHS 408

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F +  V+++  W  ++ G  ++    +A   F+EM+       + + ++ I+ ACA+ A
Sbjct: 409 VFSEMQVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNSKP--NSITMACILPACASLA 466

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
            LE G++IHG ++  G+     ++NA+VDMY KC  +  A+ +F  +  KD+VSWT +I 
Sbjct: 467 ALERGQEIHGHILRNGFSLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIA 526

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G   HG   E +A ++EM ++G++P+EV+F+ ++YACSH GL+ +G   F  M  +  I 
Sbjct: 527 GYGMHGYGSEAIAAFNEMRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIE 586

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
           P  +HY C++DLL+R+G+L +A   IK MP EPD   W ALL  C+ + + ++  +VA H
Sbjct: 587 PKSEHYACIVDLLARAGNLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEH 646

Query: 433 LLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYA 492
           +  L+PE+   Y+LL+N+YA A  W+ V K+R+ +    ++K PG S+IE     HIF  
Sbjct: 647 VFELEPENTGYYVLLANIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWIEIKGKVHIFVT 706

Query: 493 GETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGL 552
           G++SHPL ++I  LL +    MK  G+ P     L   +  EKE  L  HSE++A+A+G+
Sbjct: 707 GDSSHPLANKIELLLKKTRTRMKEEGHFPKMRYALIKADDTEKEMALCGHSEKIAMAFGI 766

Query: 553 LKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           L   PG  +RV KNLRVCGDCH + K +S++ KR+I++RD+ R+HHFKDG CSC   W
Sbjct: 767 LSLPPGKTVRVTKNLRVCGDCHEMAKFMSKMVKRDIILRDSNRFHHFKDGSCSCRGHW 824



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 134/624 (21%), Positives = 260/624 (41%), Gaps = 130/624 (20%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           +++  Y   L++CA  +     + +H+ I    +   G L + L+  Y  C  ++    +
Sbjct: 99  LELRTYCSVLQLCADLKSIQDGRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRI 158

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTM------------------------- 95
            +++       W  ++  Y +    ++++S+F  M                         
Sbjct: 159 FDKVANEKVFLWNLLMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVIS 218

Query: 96  -----------------------LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
                                  + L  +  D     S+V  C + G   LG+ +H   +
Sbjct: 219 WNSMISGYVSNGLSEKGLDLFEQMLLLGINTDLATMVSVVAGCSNTGMLLLGRALHGYAI 278

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
            + F  +  + + L+DMY+K G  N+A  VF+++  ++ VSWT+M++ YAR G    ++ 
Sbjct: 279 KASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVR 338

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F                                EM +EG+   D   +++I+ ACA   
Sbjct: 339 LFH-------------------------------EMEKEGIS-PDIFTITTILHACACTG 366

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
           +LE GK +H  +     +S LF+SNA++DMYAKC  +  A  +F  M+ KD+VSW ++I 
Sbjct: 367 LLENGKDVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIG 426

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G +++    E L L+ EM     KPN +T   ++ AC+ +  + +G+++   ++ + G +
Sbjct: 427 GYSKNSLPNEALNLFVEM-QYNSKPNSITMACILPACASLAALERGQEIHGHILRN-GFS 484

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMP------------------------------ 402
                   L+D+  + G L  A  L   +P                              
Sbjct: 485 LDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEM 544

Query: 403 ----FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS--YILLSNVYASAAM 456
                EPDE ++ ++L AC H    + G    N + +    +P S  Y  + ++ A A  
Sbjct: 545 RNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAG- 603

Query: 457 WQHVSKVRKLMSVMEVKKEPGYS-YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK 515
             ++SK  K + +M +  EP  + +     G  I++  + +  + + +FEL      E +
Sbjct: 604 --NLSKAYKFIKMMPI--EPDATIWGALLCGCRIYHDVKLAEKVAEHVFEL------EPE 653

Query: 516 RRGYVPDTSSVLHDMEQKEKERQL 539
             GY    +++  + E+ E+ ++L
Sbjct: 654 NTGYYVLLANIYAEAEKWEEVKKL 677


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 200/563 (35%), Positives = 320/563 (56%), Gaps = 34/563 (6%)

Query: 48  YGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV 107
           Y KC  V  A H+ ++MP RD VSW  ++  Y Q  +P + I +   ML   + +P+ F 
Sbjct: 2   YCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRA-RFRPNGFT 60

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           F SL+KA G+ G   +G+Q+HA  V   + +D  V S+L+DMYA                
Sbjct: 61  FTSLLKATGACGGCSIGEQMHALAVKYNWDEDVYVGSALLDMYA---------------- 104

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
                          R  +   A+ +F++   +N   W AL++G  +  +       F E
Sbjct: 105 ---------------RCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAE 149

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M+R G         SS+  A A    LE G+ +H  +I  G +   F+ N ++ MYAK  
Sbjct: 150 MQRNGFGATH-FTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSG 208

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            ++ A+ +F RM ++D+V+W +++   AQ+G  +E +A ++E+   G++ N++TF+ ++ 
Sbjct: 209 SMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLT 268

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           ACSH GLV +G+  F  M++DY + P + HY   +DLL R+G L EA   +  MP EP  
Sbjct: 269 ACSHGGLVKEGKHYF-DMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTA 327

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
             W ALL AC+ H+N +MG   A+H+  L P+D    +LL N+YAS   W   ++VRK+M
Sbjct: 328 AVWGALLGACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTGKWNDAARVRKMM 387

Query: 468 SVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
               VKKEP  S+++     H+F A + +HP   +I+ +  E++  +K+ GYVP+T+ VL
Sbjct: 388 KATGVKKEPACSWVQIENSVHMFVADDDTHPKSGDIYRMWEEINMRIKKAGYVPNTAHVL 447

Query: 528 HDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
             + ++E+E +L +HSE++A+A+ L+    G  +R++KN+R+CGDCH   K +S++ KRE
Sbjct: 448 LHINEQERETKLKYHSEKIALAFALINMPAGASIRIMKNIRICGDCHSAFKYVSKVFKRE 507

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           IVVRD  R+HHF +G CSC D+W
Sbjct: 508 IVVRDTNRFHHFSEGSCSCGDYW 530



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 127/268 (47%), Gaps = 34/268 (12%)

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           MY KCG  ++AR VFD +  ++ VSWT +++ YA++    +A+                L
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAI---------------GL 45

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
           +  ++++R            R  G      L  +   G C+      +G+Q+H L +   
Sbjct: 46  LPDMLRAR-----------FRPNGFTFTSLLKATGACGGCS------IGEQMHALAVKYN 88

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
           ++  +++ +A++DMYA+C  +  A  +F R+  K+ VSW ++I G A+    E TL  + 
Sbjct: 89  WDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFA 148

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
           EM   G      T+  +  A + +G + +GR +   +I+      +    T +L + ++S
Sbjct: 149 EMQRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNT-MLGMYAKS 207

Query: 389 GHLDEAENLIKAMPFEPDEPTWAALLSA 416
           G + +A  +   M  + D  TW  +L+A
Sbjct: 208 GSMVDARKVFDRMD-KRDLVTWNTMLTA 234



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 91/174 (52%), Gaps = 1/174 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA  +K    +   + + L+D Y +C+ +  A  + + +  ++ VSW +++  + + 
Sbjct: 78  EQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARK 137

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              + T+  F+ M   +     HF ++S+  A   +GA   G+ VHA  + S       V
Sbjct: 138 ADGETTLMKFAEM-QRNGFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFV 196

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
            ++++ MYAK G   +AR VFD +  ++ V+W  ML+A A+ G  K+A+  FE+
Sbjct: 197 GNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEE 250


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/634 (36%), Positives = 350/634 (55%), Gaps = 65/634 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLG--LHQY------------GPLPNT------------ 43
           L+ CA+ +     + +HAQ++KLG  L +Y            G L +             
Sbjct: 90  LKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDV 149

Query: 44  -----LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                LI  Y     V+ A  + + + +RD VSW +++T Y +    ++ + +F  M+  
Sbjct: 150 VSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRT 209

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           + ++PD     S++ AC   G+  LG+++H                +LVD +   G    
Sbjct: 210 N-VRPDEGTLVSVLSACAQSGSIELGREIH----------------TLVDDHHGFG---- 248

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
                 S+K+ N     A +  Y++ G  + A  +FE    +++  W  L+ G       
Sbjct: 249 -----SSLKIVN-----AFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLY 298

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL--GYESCLFIS 276
            +A   F EM R G    D  +LS ++ ACA+   +++G+ IH  +     G  +   + 
Sbjct: 299 KEALLLFQEMLRSGESPNDVTMLS-VLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSALR 357

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
            +++DMYAKC DI AA  +F  M  K + SW ++I G A HG+A     L+  M   G++
Sbjct: 358 TSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIE 417

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
           P+++T VGL+ ACSH GL+  GR +FKS+ +DY ITP L+HY C++DLL  +G   EAE 
Sbjct: 418 PDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEE 477

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           +I  MP EPD   W +LL ACK H N E+    A  L+ ++PE+  SY+LLSN+YA+A  
Sbjct: 478 IIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGR 537

Query: 457 WQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKR 516
           W+ V+++R++++   +KK PG S IE     H F  G+  HP   EI+ +L E+D  ++ 
Sbjct: 538 WEDVARIREVLNGKGMKKVPGCSSIEIDSVVHEFIIGDKLHPQSREIYRMLEEMDVLLEE 597

Query: 517 RGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIV 576
            G+VPDTS VL +ME++ KE  L  HSE+LA+A+GL+ + PGT L VVKNLRVC +CH  
Sbjct: 598 AGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTVVKNLRVCRNCHEA 657

Query: 577 MKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            K+IS+I KREIV RD TR+HHF+DG CSC D+W
Sbjct: 658 TKLISKIYKREIVARDRTRFHHFRDGVCSCCDYW 691



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 140/318 (44%), Gaps = 41/318 (12%)

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +FE     NL +W  ++ GL  S + +     ++ M   G  + +      ++ +CA
Sbjct: 36  AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXG-HVPNAYTFPFLLKSCA 94

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK---------------------CS- 287
                E G+QIH  V+ LG E   +   +++ MYA+                     C+ 
Sbjct: 95  KSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTA 154

Query: 288 ---------DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
                    D+ +A+ +F  +  +DVVSW ++I G  ++   EE L L+ EM+   V+P+
Sbjct: 155 LITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPD 214

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           E T V ++ AC+  G +  GR++   + + +G   SL+     + L S+ G ++ A  L 
Sbjct: 215 EGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLF 274

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM-- 456
           + +  + D  +W  L+    H    +    +   +L    E P+   +LS + A A +  
Sbjct: 275 EGLSCK-DVVSWNTLIGGYTHMNLYKEALLLFQEMLR-SGESPNDVTMLSVLPACAHLGA 332

Query: 457 -----WQHVSKVRKLMSV 469
                W HV   ++L  V
Sbjct: 333 IDIGRWIHVYIDKRLKGV 350


>gi|334187432|ref|NP_196098.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635619|sp|Q9LZ19.2|PP364_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g04780
 gi|332003400|gb|AED90783.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 635

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/601 (35%), Positives = 342/601 (56%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L++CAR+   +  K  H +II++ L     L N LI+AY KC  V+ A  + + M +R  
Sbjct: 68  LQLCARNGAVMEAKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLERSL 127

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++  Y +  +  + + IF  M   +  +   F  +S++ ACG        K++H 
Sbjct: 128 VSWNTMIGLYTRNRMESEALDIFLEMRN-EGFKFSEFTISSVLSACGVNCDALECKKLHC 186

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V            + +D+    G                    TA+L  YA+ G  KD
Sbjct: 187 LSV-----------KTCIDLNLYVG--------------------TALLDLYAKCGMIKD 215

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+++FE    ++   W+++V+G VQ++N  +A   +   +R  ++  +   LSS++ AC+
Sbjct: 216 AVQVFESMQDKSSVTWSSMVAGYVQNKNYEEALLLYRRAQRMSLE-QNQFTLSSVICACS 274

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           N A L  GKQ+H ++   G+ S +F++++ VDMYAKC  +  +  IF  ++ K++  W +
Sbjct: 275 NLAALIEGKQMHAVICKSGFGSNVFVASSAVDMYAKCGSLRESYIIFSEVQEKNLELWNT 334

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           II G A+H + +E + L+++M   G+ PNEVTF  L+  C H GLV +GR+ FK M   Y
Sbjct: 335 IISGFAKHARPKEVMILFEKMQQDGMHPNEVTFSSLLSVCGHTGLVEEGRRFFKLMRTTY 394

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G++P++ HY+C++D+L R+G L EA  LIK++PF+P    W +LL++C+ ++N E+    
Sbjct: 395 GLSPNVVHYSCMVDILGRAGLLSEAYELIKSIPFDPTASIWGSLLASCRVYKNLELAEVA 454

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  L  L+PE+  +++LLSN+YA+   W+ ++K RKL+   +VKK  G S+I+     H 
Sbjct: 455 AEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHT 514

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F  GE+ HP   EI   L  L  + ++ GY P     LHD+E  +KE  L  HSE+LA+ 
Sbjct: 515 FSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALV 574

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GL+     + +R++KNLR+C DCH  MK  S  T+R I+VRD  R+HHF DG CSC DF
Sbjct: 575 FGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGDF 634

Query: 610 W 610
           W
Sbjct: 635 W 635



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/182 (26%), Positives = 91/182 (50%), Gaps = 4/182 (2%)

Query: 244 IVGACA-NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           I+  CA N AV+E  K  HG +I +  E  + + N +++ Y+KC  +  A+ +F  M  +
Sbjct: 67  ILQLCARNGAVME-AKACHGKIIRIDLEGDVTLLNVLINAYSKCGFVELARQVFDGMLER 125

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
            +VSW ++I    ++    E L ++ EM + G K +E T   ++ AC  V       K  
Sbjct: 126 SLVSWNTMIGLYTRNRMESEALDIFLEMRNEGFKFSEFTISSVLSACG-VNCDALECKKL 184

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
             +     I  +L   T LLDL ++ G + +A  + ++M  +    TW+++++    ++N
Sbjct: 185 HCLSVKTCIDLNLYVGTALLDLYAKCGMIKDAVQVFESMQ-DKSSVTWSSMVAGYVQNKN 243

Query: 423 TE 424
            E
Sbjct: 244 YE 245


>gi|224116778|ref|XP_002331875.1| predicted protein [Populus trichocarpa]
 gi|222875393|gb|EEF12524.1| predicted protein [Populus trichocarpa]
          Length = 675

 Score =  417 bits (1073), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/569 (38%), Positives = 326/569 (57%), Gaps = 33/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N ++  Y +   V+    L EEMP RD +SW S++   +     ++ + +F  ML    +
Sbjct: 140 NAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLR-SGV 198

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +P    FA ++ AC +     LG QVH   V       + +  SL+  YA C        
Sbjct: 199 EPTWSTFACVLSACANAVEFNLGVQVHGHVVKLGCFFHEFISVSLITFYANC-------- 250

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
               +K+++                   A +IF +   +N+  WTAL++  V +    DA
Sbjct: 251 ----MKIEH-------------------AHKIFNETLTKNVVKWTALLTAYVWNNKHQDA 287

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F +M + G  + +    S  + AC     L+ GK+IH + I LG E+ +F+ N++V 
Sbjct: 288 LRVFGDMTKMGA-LPNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVV 346

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY +C ++ +A  +F  +  KD+VSW SIIVG+AQHG     L  +++M+  GV PNE+T
Sbjct: 347 MYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDPNEIT 406

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F GL+ ACS  G++ KGR  F+ +          QHY C++D+L R G LDEAE L++ M
Sbjct: 407 FTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCGKLDEAEELVRYM 466

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P + +   W ALLSAC+ H N E+  R A H+L L+P   S+Y+LLSN+YASA  W  VS
Sbjct: 467 PVKANSMIWLALLSACRVHSNLEVAERAAKHILDLEPNCSSAYVLLSNIYASAGRWADVS 526

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           ++R  M    + K+PG S++      H F + + SHPL + I+E L  L  ++K  GYVP
Sbjct: 527 RMRVKMKQGGLVKQPGSSWVVLRGKKHEFLSADRSHPLSERIYEKLDWLGKKLKEFGYVP 586

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           D    LHD+E ++KE  L +HSERLA+A+GL+ +V G+ + V+KNLRVCGDCH V+K++S
Sbjct: 587 DQKFALHDVEDEQKEEMLSFHSERLAIAFGLVSTVEGSTITVMKNLRVCGDCHSVIKLMS 646

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I  R+IVVRD+ R+HHFK+G CSC+D+W
Sbjct: 647 KIVGRKIVVRDSGRFHHFKNGICSCSDYW 675



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 181/388 (46%), Gaps = 50/388 (12%)

Query: 39  PLPN-----TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFS 93
           P PN      +I  Y + D +  A  L + M  RD VSW S++                 
Sbjct: 39  PSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKG--------------- 83

Query: 94  TMLALDKLQPDHFVFASLVKACGSLG-ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAK 152
               LD               CG+LG ATRL  ++    V+S         +++V+ Y K
Sbjct: 84  ---CLD---------------CGNLGMATRLFDEMPEKNVISW--------TTMVNGYLK 117

Query: 153 CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGL 212
            G    A+ +F  + +K+  +W AM+  Y  +GR ++ + +FE+ PVR++  WT+++ GL
Sbjct: 118 FGRVELAQRLFLDMHVKDVAAWNAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGL 177

Query: 213 VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC 272
             +    +A + F +M R GV+       + ++ ACAN     LG Q+HG V+ LG    
Sbjct: 178 DLNGKSEEALFVFKKMLRSGVEPTWS-TFACVLSACANAVEFNLGVQVHGHVVKLGCFFH 236

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
            FIS +++  YA C  I  A  IF     K+VV WT+++     + + ++ L ++ +M  
Sbjct: 237 EFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNKHQDALRVFGDMTK 296

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
            G  PN+ TF   + AC  +  + KG+++  +M    G+   +     L+ + +  G+++
Sbjct: 297 MGALPNQSTFSITLKACCGLEALDKGKEI-HTMAIKLGLETDVFVGNSLVVMYTECGNVN 355

Query: 393 EAENLIKAMPFEPDEPTWAALLSACKHH 420
            A  + + +  E D  +W +++     H
Sbjct: 356 SAVAVFRNIN-EKDIVSWNSIIVGSAQH 382



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 111/232 (47%), Gaps = 8/232 (3%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  ++KLG   +  +  +LI  Y  C  +++AH +  E   ++ V W ++LTAY   N 
Sbjct: 224 VHGHVVKLGCFFHEFISVSLITFYANCMKIEHAHKIFNETLTKNVVKWTALLTAYVWNNK 283

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            Q  + +F  M  +  L P+   F+  +KAC  L A   GK++H   +      D  V +
Sbjct: 284 HQDALRVFGDMTKMGAL-PNQSTFSITLKACCGLEALDKGKEIHTMAIKLGLETDVFVGN 342

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR---- 200
           SLV MY +CG  N+A AVF +I  K+ VSW +++   A+ G    A+  F Q   R    
Sbjct: 343 SLVVMYTECGNVNSAVAVFRNINEKDIVSWNSIIVGSAQHGFGLWALIFFNQMIRRGVDP 402

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP---LVLSSIVGACA 249
           N   +T L+S   +S   +     F  + R   +++ P     +  I+G C 
Sbjct: 403 NEITFTGLLSACSRSGMLLKGRCFFEYISRYKSNVLRPQHYACMVDILGRCG 454



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 104/195 (53%), Gaps = 9/195 (4%)

Query: 157 NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
           + AR +FD I   N   +T M++ Y R+ R  DA+++F++  VR++  W +++ G +   
Sbjct: 29  DQARLIFDKIPSPNLHLYTKMIAGYTRNDRLCDALKLFDRMSVRDVVSWNSMIKGCLDCG 88

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
           N   A   F EM  + V     +  +++V     F  +EL ++   L + +  +  +   
Sbjct: 89  NLGMATRLFDEMPEKNV-----ISWTTMVNGYLKFGRVELAQR---LFLDMHVKD-VAAW 139

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
           NA+V  Y +   +     +F  M  +DV+SWTS+I G   +G++EE L ++ +M+ +GV+
Sbjct: 140 NAMVHGYFENGRVEEGVRLFEEMPVRDVISWTSMIGGLDLNGKSEEALFVFKKMLRSGVE 199

Query: 337 PNEVTFVGLIYACSH 351
           P   TF  ++ AC++
Sbjct: 200 PTWSTFACVLSACAN 214



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/195 (26%), Positives = 89/195 (45%), Gaps = 17/195 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C   +     K +H   IKLGL     + N+L+  Y +C  V  A  +   + ++D 
Sbjct: 310 LKACCGLEALDKGKEIHTMAIKLGLETDVFVGNSLVVMYTECGNVNSAVAVFRNINEKDI 369

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW SI+    Q       +  F+ M+    + P+   F  L+ AC   G    G+    
Sbjct: 370 VSWNSIIVGSAQHGFGLWALIFFNQMIR-RGVDPNEITFTGLLSACSRSGMLLKGR---- 424

Query: 130 CFV--LSPFCDDDVVK----SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYA 182
           CF   +S +   +V++    + +VD+  +CG  + A  +   + +K NS+ W A+LSA  
Sbjct: 425 CFFEYISRY-KSNVLRPQHYACMVDILGRCGKLDEAEELVRYMPVKANSMIWLALLSAC- 482

Query: 183 RSGRKKDAMEIFEQA 197
              R    +E+ E+A
Sbjct: 483 ---RVHSNLEVAERA 494


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 213/605 (35%), Positives = 339/605 (56%), Gaps = 12/605 (1%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   L  CAR       K LHAQ+I+   H    + + L++ Y K    + A  +   + 
Sbjct: 273 YTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLH 332

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            R++V+W  +++ + Q     +++ +F+ M A + +  D F  A+L+  C S     LG+
Sbjct: 333 DRNNVAWTVLISGFLQYGCFTESVELFNQMRA-ELMTLDQFALATLISGCCSRMDLCLGR 391

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q+H+  + S      VV +SL+ MYAKC    +A A+F  +  K+ VSWT+M++AY++ G
Sbjct: 392 QLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVG 451

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
               A E F+    +N+  W A++   +Q   E D    +  M  E     D +   ++ 
Sbjct: 452 NVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLF 511

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
             CA+    +LG QI G  + +G      ++NA++ MY+KC  I+ A+ +F  +  KD+V
Sbjct: 512 KGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIV 571

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SW ++I G +QHG  ++ + ++D+++  G KP+ +++V ++  CSH GLV +G+  F  M
Sbjct: 572 SWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMM 631

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
              + I+P L+H++C++DLL R+GHL EA++LI  MP +P    W ALLSACK H N E+
Sbjct: 632 KRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNEL 691

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
               A H+  L   D  SY+L++ +YA A      +++RKLM    +KK PGYS++E   
Sbjct: 692 AELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDN 751

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H+F A + SHP    I + L EL  ++ R GYV           + +  R    HSE+
Sbjct: 752 KVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYV-----------RTDSTRSEIHHSEK 800

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LAVA+GL+       + ++KNLR+CGDCH V+K+IS +T RE V+RDA R+HHF  G CS
Sbjct: 801 LAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCS 860

Query: 606 CNDFW 610
           C D+W
Sbjct: 861 CGDYW 865



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 204/439 (46%), Gaps = 36/439 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +++ Y K   +  A  L   MP RD  SW ++++ Y Q+     ++  F +M      
Sbjct: 75  NVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDS 134

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P+ F  A  +K+CG+LG   L  Q+ A        DD  V ++LVDM+ +CG  + A  
Sbjct: 135 WPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASR 194

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F  IK        +ML+ Y ++     A+E+F+  P R++  W  +VS L QS    +A
Sbjct: 195 LFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREA 254

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
               ++M+ +GV + D    +S + ACA  + L  GKQ+H  VI        ++++A+V+
Sbjct: 255 LDMVVDMQSKGVRL-DSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVE 313

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           +YAK      AK +F  +  ++ V+WT +I G  Q+G   E++ L+++M +  +  ++  
Sbjct: 314 LYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFA 373

Query: 342 FVGLIYACSHVGLVGKGRKLF---------------KSMIEDYGITPSLQ---------- 376
              LI  C     +  GR+L                 S+I  Y    +LQ          
Sbjct: 374 LATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMN 433

Query: 377 -----HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
                 +T ++   S+ G++ +A      M  E +  TW A+L A   H   E G R+  
Sbjct: 434 EKDIVSWTSMITAYSQVGNVAKAREFFDGMS-EKNVITWNAMLGAYIQHGAEEDGLRMYK 492

Query: 432 HLLS---LKPEDPSSYILL 447
            +LS   ++P D  +Y+ L
Sbjct: 493 VMLSEEYVRP-DWVTYVTL 510



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 157/343 (45%), Gaps = 38/343 (11%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF-DSI 166
           FA  +++CG+ GA    + +H   V         ++++L+  Y  CG  ++AR +    I
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDI 66

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
              N ++   ML+ YA+ GR  DA+E+F + P R++  W  L+SG  QSR  + +  +F+
Sbjct: 67  AHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFL 126

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            M R G    +   L+  + +C       L  Q+  +V     +    ++ A+VDM+ +C
Sbjct: 127 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRC 186

Query: 287 SDIIAAKDIFGRMR-------------------------------RKDVVSWTSIIVGTA 315
             +  A  +F R++                                +DVVSW  ++   +
Sbjct: 187 GAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 246

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
           Q G+  E L +  +M S GV+ +  T+   + AC+ +  +  G++L   +I +    P +
Sbjct: 247 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL---PHI 303

Query: 376 QHY--TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             Y  + L++L ++SG   EA+ +  ++  + +   W  L+S 
Sbjct: 304 DPYVASALVELYAKSGCFKEAKGVFNSL-HDRNNVAWTVLISG 345


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/592 (36%), Positives = 333/592 (56%), Gaps = 35/592 (5%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           L  K +HA  IK G      + NTLID Y KC  + Y     + M  +D +SW +    Y
Sbjct: 278 LNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGY 337

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            Q     + + +    L ++ +  D  +  S++ AC  L      K++H  + +     D
Sbjct: 338 AQNKCYLQALELLRQ-LQMEGMDVDATMIGSILLACRGLNCLGKIKEIHG-YTIRGGLSD 395

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
            V++++++D+Y +CG+ + A  +F+SI+ K+ VSWT+M+S Y  +G    A+E+F     
Sbjct: 396 PVLQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSS--- 452

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                       M+  G++  D + L SI+ A  + + L+ GK+
Sbjct: 453 ----------------------------MKETGLE-PDYVTLVSILSAVCSLSTLKKGKE 483

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           IHG +I  G+     ISN +VDMYA+C  +  A  IF   + ++++ WT++I     HG 
Sbjct: 484 IHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGY 543

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
            E  + L+  M    + P+ +TF+ L+YACSH GLV +G+   + M  +Y + P  +HYT
Sbjct: 544 GEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYT 603

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           CL+DLL R   L+EA  ++K+M  EP    W ALL AC+ H N E+G   A  LL L  +
Sbjct: 604 CLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLD 663

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           +P +Y+L+SNV+A+   W+ V +VR  M    + K PG S+IE G   H F + +  HP 
Sbjct: 664 NPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWIEVGNKIHAFLSRDKLHPE 723

Query: 500 KDEIFELLTELDAEMKRR-GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
            D+I++ L ++  ++KR  GYV  T  VLH++ ++EK + L+ HSERLA+AYGLL +  G
Sbjct: 724 CDKIYQKLAQVTEKLKREGGYVAQTKFVLHNVGEEEKVQMLYGHSERLAIAYGLLATAEG 783

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           T +RV KNLRVCGDCH    ++SR  +RE++VRDA+R+HHFKDG CSC DFW
Sbjct: 784 TPIRVTKNLRVCGDCHSFCTLVSRFFERELIVRDASRFHHFKDGMCSCGDFW 835



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 170/342 (49%), Gaps = 37/342 (10%)

Query: 48  YGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV 107
           YGKC  V  A  + ++M +R   +W +++  Y         + ++  M  L  +  D + 
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLG-VSFDSYT 60

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSI 166
           F  L+KACG +     G ++H    +   CD  V V +SLV +YAKC   N AR +FD +
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHG-LAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 167 KLKNS-VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSF 225
            ++N  VSW +++SAY+ +G   +A+ +F                               
Sbjct: 120 YVRNDVVSWNSIISAYSGNGMCTEALCLFS------------------------------ 149

Query: 226 IEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK 285
            EM + GV + +    ++ + AC + + ++LG QIH  ++  G    ++++NA+V MY +
Sbjct: 150 -EMLKAGV-VTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVR 207

Query: 286 CSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGL 345
              +  A  IFG +  KD+V+W S++ G  Q+G   E L  + ++ +A +KP++V+ + +
Sbjct: 208 FGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISI 267

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
           I A   +G +  G+++    I++ G   ++     L+D+ ++
Sbjct: 268 IVASGRLGYLLNGKEIHAYAIKN-GFDSNILVGNTLIDMYAK 308



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/412 (24%), Positives = 189/412 (45%), Gaps = 37/412 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR-D 68
           L+ C   +       +H   IK G   +  + N+L+  Y KC+ +  A  L + M  R D
Sbjct: 65  LKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRND 124

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW SI++AY+   +  + + +FS ML    +  + + FA+ ++AC      +LG Q+H
Sbjct: 125 VVSWNSIISAYSGNGMCTEALCLFSEMLKAG-VVTNTYTFAAALQACEDSSFIKLGMQIH 183

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           A  + S           ++D+Y                         A+++ Y R G+  
Sbjct: 184 AAILKS---------GRVLDVYVA----------------------NALVAMYVRFGKMP 212

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A  IF     +++  W ++++G +Q+    +A   F +++   +   D + + SI+ A 
Sbjct: 213 EAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLK-PDQVSIISIIVAS 271

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
                L  GK+IH   I  G++S + + N ++DMYAKC  +      F  M  KD++SWT
Sbjct: 272 GRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWT 331

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           +   G AQ+    + L L  ++   G+  +      ++ AC  +  +GK +++    I  
Sbjct: 332 TAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRG 391

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
               P LQ+   ++D+    G +D A  + +++  + D  +W +++S   H+
Sbjct: 392 GLSDPVLQN--TIIDVYGECGIIDYAVRIFESIECK-DVVSWTSMISCYVHN 440



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/237 (32%), Positives = 120/237 (50%), Gaps = 4/237 (1%)

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           Y + G   DA  IF++   R++F W A++ G V +   + A   + EMR  GV   D   
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSF-DSYT 60

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
              ++ AC     L  G +IHGL I  G +S +F+ N++V +YAKC+DI  A+ +F RM 
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMY 120

Query: 301 -RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
            R DVVSW SII   + +G   E L L+ EM+ AGV  N  TF   + AC     +  G 
Sbjct: 121 VRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGM 180

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           ++  ++++  G    +     L+ +  R G + EA  +   +    D  TW ++L+ 
Sbjct: 181 QIHAAILKS-GRVLDVYVANALVAMYVRFGKMPEAAVIFGNLE-GKDIVTWNSMLTG 235



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 1/135 (0%)

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  ++ A+ IF +M  + + +W +++ G   +G+A   L +Y EM   GV  +  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F  L+ AC  V  +  G ++    I+ YG    +     L+ L ++   ++ A  L   M
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIK-YGCDSFVFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 402 PFEPDEPTWAALLSA 416
               D  +W +++SA
Sbjct: 120 YVRNDVVSWNSIISA 134


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/602 (36%), Positives = 341/602 (56%), Gaps = 35/602 (5%)

Query: 10  LRVCARH-QIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L+ CAR   + L +K +H+ ++K G      +  +L+  Y KCD    A  + +++P ++
Sbjct: 121 LKACARKLDVRLGLK-IHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKN 179

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW +I+T Y  +   ++ I  F  +L +  L+PD F    ++ AC  LG    G+ + 
Sbjct: 180 VVSWTAIITGYISSGHFREAIGAFKKLLEMG-LKPDSFSLVKVLAACARLGDCTSGEWID 238

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
                S    +  V +SL+DMY KCG    A  +F ++  K+ VSW+ M+  YA +G  +
Sbjct: 239 RYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQ 298

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            A+++F Q                +QS N     Y+ +                 ++ AC
Sbjct: 299 QALDLFFQ----------------MQSENLKPDCYTMV----------------GVLSAC 326

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A    L+LG     L+    + S   +  A++DMY+KC  +  A +IF  M++KD V W 
Sbjct: 327 ATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWN 386

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           +++VG + +G A+   +L+  +   G++P+E TF+GL+  C+H G V +GR+ F +M   
Sbjct: 387 AMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRV 446

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           + +TPS++HY C++DLL R+G L+EA  LI  MP +P+   W ALL  CK H++T +  +
Sbjct: 447 FSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAVVWGALLGGCKLHKDTHLAEQ 506

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
           V   L+ L+P +  +Y+ LSN+Y+    W+   K+R  M   +++K    S+IE     H
Sbjct: 507 VLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKIRSTMKEQQIQKIRACSWIEIDGIVH 566

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F  G+ SH L ++I+  L EL  E+K  G+VP T  VL D+E++EKE  L +HSE+LAV
Sbjct: 567 EFLVGDKSHWLSEKIYAKLDELGRELKAVGHVPTTEFVLFDIEEEEKEHFLGYHSEKLAV 626

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+GL+ S P  V+RVVKNLRVCGDCH  +K+IS+ITKREI++RD  R+H F DG CSC D
Sbjct: 627 AFGLIASPPNHVIRVVKNLRVCGDCHDAIKLISKITKREIIIRDTNRFHTFIDGSCSCRD 686

Query: 609 FW 610
           +W
Sbjct: 687 YW 688



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 117/224 (52%), Gaps = 3/224 (1%)

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F Q    N+FLW  ++ GLV      DA + +  MR  G  + +   +  ++ ACA   
Sbjct: 70  VFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGF-LPNNFTIPFVLKACARKL 128

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
            + LG +IH L++  GY+  +F+  +++ +Y KC +   A  +F  +  K+VVSWT+II 
Sbjct: 129 DVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIIT 188

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G    G   E +  + +++  G+KP+  + V ++ AC+ +G    G +     I D G+ 
Sbjct: 189 GYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSG-EWIDRYISDSGMG 247

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            ++   T LLD+  + G+L+ A  +  AMP E D  +W+ ++  
Sbjct: 248 RNVFVATSLLDMYVKCGNLERANLIFSAMP-EKDIVSWSTMIQG 290


>gi|115483184|ref|NP_001065185.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|78708963|gb|ABB47938.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
 gi|113639794|dbj|BAF27099.1| Os10g0540100 [Oryza sativa Japonica Group]
 gi|125575555|gb|EAZ16839.1| hypothetical protein OsJ_32311 [Oryza sativa Japonica Group]
 gi|215704329|dbj|BAG93763.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 681

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 214/569 (37%), Positives = 328/569 (57%), Gaps = 34/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           ++L+  Y +   +  A  +   MP+RD V+W++++  +  A  P   I ++  M   D +
Sbjct: 147 SSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE-DGV 205

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           + D  V   +++AC +    R+G  VH   +      D V  +SLVDMYAK GL + A  
Sbjct: 206 KGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACR 265

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF  +  +N VS                               W+A++SG  Q+    +A
Sbjct: 266 VFGLMVHRNDVS-------------------------------WSAMISGFAQNGQSDEA 294

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M+  G+   D   L S + AC+N   L+LG+ +HG ++     +C+ +  A +D
Sbjct: 295 LRLFRNMQASGIQ-PDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCI-LGTAAID 352

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY+KC  + +A+ +F  +  +D++ W ++I     HG+ ++ L L+ EM   G++P+  T
Sbjct: 353 MYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHAT 412

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F  L+ A SH GLV +G+  F  M+  + ITP+ +HY CL+DLL+RSG ++EA +L+ +M
Sbjct: 413 FASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSM 472

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
             EP    W ALLS C +++  E+G  +A+++L L+P+D     L+SN+YA+   W  V 
Sbjct: 473 KAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVR 532

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           +VRKLM     KK PG S IE     H+F   + SHP ++EI   + +LD EM++ GY+P
Sbjct: 533 QVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIP 592

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
            T  V HD+E++ KE+QL +HSERLA+A+GLL + PGT L ++KNLRVCGDCH  +K IS
Sbjct: 593 RTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYIS 652

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I  REIVVRDA R+HHFKDG CSC D+W
Sbjct: 653 KIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 156/319 (48%), Gaps = 35/319 (10%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PD   F   + AC  LG  R G+ V      + + DD  V SSL+ +YA+ G   +A  
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF  +  ++ V+W+ M++ +  +G+  DA++++ +                         
Sbjct: 165 VFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRR------------------------- 199

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
                 MR +GV   D +V+  ++ AC     + +G  +HG ++  G    +  + ++VD
Sbjct: 200 ------MREDGVK-GDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVD 252

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MYAK   +  A  +FG M  ++ VSW+++I G AQ+GQ++E L L+  M ++G++P+   
Sbjct: 253 MYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGA 312

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
            V  + ACS++G +  GR +   ++  +     L   T  +D+ S+ G L  A+ L   M
Sbjct: 313 LVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILG--TAAIDMYSKCGSLASAQMLFN-M 369

Query: 402 PFEPDEPTWAALLSACKHH 420
             + D   W A+++ C  H
Sbjct: 370 ISDRDLILWNAMIACCGAH 388



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 108/216 (50%), Gaps = 3/216 (1%)

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           D    +  + ACA    L  G+ +       GY+  +F+ ++++ +YA+   +  A  +F
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVF 166

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
            RM R+D V+W++++ G    GQ  + + +Y  M   GVK +EV  +G+I AC+    V 
Sbjct: 167 VRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVR 226

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G  +   ++  +G+   +   T L+D+ +++G LD A  +   M    D  +W+A++S 
Sbjct: 227 MGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRND-VSWSAMISG 284

Query: 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
              +  ++   R+  ++ +   + P S  L+S + A
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQ-PDSGALVSALLA 319


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 215/594 (36%), Positives = 336/594 (56%), Gaps = 6/594 (1%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           L  + +H  ++K        + N+LI  Y     +  A+ +  ++ ++D VSW S+++ +
Sbjct: 148 LAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGF 207

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC-FVLSPFCD 138
            Q   P++ + +F  M  ++  +P+      ++ AC        G+   AC ++     D
Sbjct: 208 VQGGSPEEALQLFKRM-KMENARPNRVTMVGVLSACAKRIDLEFGRW--ACDYIERNGID 264

Query: 139 DDVVKS-SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            +++ S +++DMY KCG   +AR +FD ++ K+ VSWT M+  YA+ G    A  +F+  
Sbjct: 265 INLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVM 324

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P  ++  W AL+S   Q+    +A   F E++       + + L+S + ACA    ++LG
Sbjct: 325 PREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLG 384

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
             IH  +   G +    I+ +++DMY+KC  +  A ++F  + R+DV  W+++I G A H
Sbjct: 385 GWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVERRDVFVWSAMIAGLAMH 444

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G     + L+ +M    VKPN VTF  L+ ACSH GLV +GR  F  M   YG+ P  +H
Sbjct: 445 GHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGRLFFNQMRPVYGVVPGSKH 504

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
           Y C++D+L R+G L+EA  LI+ MP  P    W ALL AC+ + N E+     + LL   
Sbjct: 505 YACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRIYGNVELAEMACSRLLETD 564

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
             +  +Y+LLSN+YA A  W  VS++R+ M V  ++KEPG S IE     H F  G+ SH
Sbjct: 565 SNNHGAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGCSSIEVNGIIHEFLVGDNSH 624

Query: 498 PLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE-KERQLFWHSERLAVAYGLLKSV 556
           PL  EI+  L E+ A +K  GYV D S +L  +E++  KE  L  HSE+LA+AYGL++  
Sbjct: 625 PLSTEIYSKLDEIVARIKSTGYVSDESHLLQFVEEEYMKEHALNLHSEKLAIAYGLIRME 684

Query: 557 PGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           P   +R+VKNLRVCGDCH V K+IS++  R+I++RD  R+HHF  G CSC D+W
Sbjct: 685 PSQPIRIVKNLRVCGDCHSVAKLISKLYNRDILLRDRYRFHHFSGGNCSCMDYW 738



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 200/436 (45%), Gaps = 74/436 (16%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL-----VQYAHHLLEEMPQRDHVSWASIL 76
           +K LHA +++ GL    P    L  A   C L     + YA  + +++P+ +  +W +++
Sbjct: 46  LKQLHAHMLRTGLFFDPPSATKLFTA---CALSSPSSLDYACKVFDQIPRPNLYTWNTLI 102

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
            A+  +  P + + +F  ML   +  P+ + F  ++KA   + +   G+ +H   + + F
Sbjct: 103 RAFASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLAGQAIHGMVMKASF 162

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             D  + +SL+  Y+  G  ++A  VF  I  K+ VSW +M+S + + G  ++A+++F++
Sbjct: 163 GSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQLFKR 222

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
             + N                           R   V +V       ++ ACA    LE 
Sbjct: 223 MKMEN--------------------------ARPNRVTMV------GVLSACAKRIDLEF 250

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA- 315
           G+     +   G +  L +SNA++DMY KC  +  A+ +F +M  KD+VSWT++I G A 
Sbjct: 251 GRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAK 310

Query: 316 ------------------------------QHGQAEETLALYDEM-VSAGVKPNEVTFVG 344
                                         Q+G+ +E LA++ E+ ++   KPNEVT   
Sbjct: 311 VGDYDAARRVFDVMPREDITAWNALISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLAS 370

Query: 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE 404
            + AC+ +G +  G       I+  GI  +    T L+D+ S+ GHL++A  +  ++   
Sbjct: 371 TLAACAQLGAMDLG-GWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSVE-R 428

Query: 405 PDEPTWAALLSACKHH 420
            D   W+A+++    H
Sbjct: 429 RDVFVWSAMIAGLAMH 444


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 217/584 (37%), Positives = 327/584 (55%), Gaps = 33/584 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +++HA + K G      + N L+  Y K   V     L E M  RD +SW + L+  +  
Sbjct: 435 QSIHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDC 494

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            +  + ++IF  ML  +   P+ + F S++ +C  L     G+QVHA  + +   D++ V
Sbjct: 495 GMYDRPLTIFYHMLE-EGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFV 553

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+DMY                               A+    +DA   F +  VR+L
Sbjct: 554 CTALIDMY-------------------------------AKCMYLEDADVAFNRLSVRDL 582

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
           F WT +++   Q+     A   F +M++EGV   +   L+  +  C++ A LE G+Q+H 
Sbjct: 583 FTWTVIITNYAQTNQGEKALNYFRQMQQEGVK-PNEFTLAGCLSGCSSLASLEGGQQLHS 641

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           +V   G+ S +F+ +A+VDMYAKC  +  A+ +F  + R+D ++W +II G AQ+GQ  +
Sbjct: 642 MVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNK 701

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L  +  M+  G+ P+ VTF G++ ACSH GLV +G++ F SM  D+GI+P++ H  C++
Sbjct: 702 ALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMV 761

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+L R G  DE E+ I+ M    +   W  +L A K H N  +G + AN L  L+PE+ S
Sbjct: 762 DILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEES 821

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           SYILLSN++A+   W  V +VR LMS   VKKEPG S++E     H F + + SHP   E
Sbjct: 822 SYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWVEANGQVHTFVSHDYSHPQIQE 881

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I   L ELD E+    YVP T  VLH++ + EK+  L +HSERLA+ + L+ +     +R
Sbjct: 882 IHLKLDELDRELASIQYVPKTEYVLHNVGETEKKENLRFHSERLALGFALISTSSEKKIR 941

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           + KNLR+C DCH VMK IS IT +EIVVRD  R+HHFK+G CSC
Sbjct: 942 IFKNLRICRDCHDVMKHISSITNQEIVVRDVRRFHHFKNGACSC 985



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/415 (28%), Positives = 200/415 (48%), Gaps = 35/415 (8%)

Query: 2   QISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
           ++ +Y   LR CA  +     K +H  I+K  ++    L  +L++ Y KC    YA  +L
Sbjct: 111 KLKYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVL 170

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
            +MP RD VSW +++           +I +F  M   + + P+ F  A+ +KAC    A 
Sbjct: 171 AKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQN-EGIMPNEFTLATGLKACSLCMAL 229

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
            LGKQ+HA         D  V S+LVD+YAKCG    A  +F  +  +N V+W  +L+ Y
Sbjct: 230 DLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGY 289

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
           A+ G                       V+G+++       F S +E+  +     +   L
Sbjct: 290 AQRGD----------------------VTGVLK------LFCSMMELDVK----CNEFTL 317

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           ++++  CAN   L+ G+ IH L+I  GYE   FI   +VDMY+KC   I A  +F  +++
Sbjct: 318 TTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKK 377

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
            D+V W+++I    Q GQ+EE++ L+  M      PN+ T   L+ A ++ G +  G+ +
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSI 437

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             + +  YG    +     L+ +  ++G + +   L ++M  + D  +W A LS 
Sbjct: 438 -HACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESM-VDRDLISWNAYLSG 490



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 102/430 (23%), Positives = 205/430 (47%), Gaps = 48/430 (11%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HAQ  KLGL     + + L+D Y KC  ++ A  +   MP+++ V+W  +L  Y Q 
Sbjct: 233 KQMHAQAFKLGLLLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQR 292

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 + +F +M+ LD ++ + F   +++K C +    + G+ +H+  +   +  ++ +
Sbjct: 293 GDVTGVLKLFCSMMELD-VKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFI 351

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
              LVDMY+KCGL  +A  VF +IK  + V W+A+++   + G+ ++++++F        
Sbjct: 352 GCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFH------- 404

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                    + R G  + +   + S++ A  N   L+ G+ IH 
Sbjct: 405 -------------------------LMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHA 439

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            V   G+E+ + +SNA+V MY K   +     ++  M  +D++SW + + G    G  + 
Sbjct: 440 CVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDR 499

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK----LFKSMIEDYGITPSLQHY 378
            L ++  M+  G  PN  TF+ ++ +CS +  V  GR+    + K+ ++D          
Sbjct: 500 PLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKNQLDDNNFVC----- 554

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
           T L+D+ ++  +L++A+     +    D  TW  +++   ++  T  G +  N+   ++ 
Sbjct: 555 TALIDMYAKCMYLEDADVAFNRLSVR-DLFTWTVIIT---NYAQTNQGEKALNYFRQMQQ 610

Query: 439 E--DPSSYIL 446
           E   P+ + L
Sbjct: 611 EGVKPNEFTL 620



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 165/347 (47%), Gaps = 35/347 (10%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           ++S+++ C S  +  + K +H   V      D  +  SLV++YAKC              
Sbjct: 115 YSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKC-------------- 160

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
                      SAYAR         +  + P R++  WTAL+ GLV      D+ Y F E
Sbjct: 161 ---------RYSAYARL--------VLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQE 203

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M+ EG+ + +   L++ + AC+    L+LGKQ+H     LG    LF+ +A+VD+YAKC 
Sbjct: 204 MQNEGI-MPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKCG 262

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
           +I  A  +F  M  ++ V+W  ++ G AQ G     L L+  M+   VK NE T   ++ 
Sbjct: 263 EIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLK 322

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
            C++   + +G ++  S+I   G   +      L+D+ S+ G   +A  + K +  +PD 
Sbjct: 323 GCANSKNLKQG-QVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIK-KPDI 380

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454
             W+AL++       +E   ++  HL+ L    P+ Y + S + A+ 
Sbjct: 381 VVWSALITCLDQQGQSEESIKLF-HLMRLGDTLPNQYTICSLLSAAT 426


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 218/608 (35%), Positives = 345/608 (56%), Gaps = 39/608 (6%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLG-LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           L+ + VC    +   +K LH   +K   +H    + N  + +Y KC  + YAH +   + 
Sbjct: 396 LNAVPVCFEESVLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIR 455

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            +   SW +++  Y+Q++ P+ ++  +  M +   L PD F   SL+ AC  + + +LGK
Sbjct: 456 SKTVNSWNALIGGYSQSSDPRLSLDAYFQMKS-SGLLPDLFTVCSLLSACSQIKSLKLGK 514

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           +VH   + +    D  V  SL+ +Y  CG  + A  +FD+++ K  VSW  M++ Y ++G
Sbjct: 515 EVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNG 574

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS--S 243
             + A+ +F     R + L+                              V P  +S  S
Sbjct: 575 FPERALSLF-----RQMVLYG-----------------------------VQPCEISMMS 600

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           + GAC+    L LG++ HG  +    E   FI+ +++DMYAK   ++ +  +F  ++ + 
Sbjct: 601 VFGACSLLPSLRLGREAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERS 660

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           V SW ++++G   HG+A+E + L++EM   G  P+E+TF+G++ AC+H GLV +G     
Sbjct: 661 VASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLD 720

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL-IKAMPFEPDEPTWAALLSACKHHRN 422
            M   +G+ P+L+HY C++D+L R+G LDEA  +  + M  EP    W  LLS+C+ H+N
Sbjct: 721 QMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKN 780

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
            EMG ++A  L   +PE P +Y+LLSN+YA +  W  V KVR+ M  M ++K+ G S+IE
Sbjct: 781 LEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWIE 840

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWH 542
                  F AGE+S    +EI  L + L+ E+ + GY PDTSSV HD+ ++EK  QL  H
Sbjct: 841 LNGKVFSFVAGESSLDGFEEIKSLWSVLEREIGKMGYRPDTSSVQHDLSEEEKTEQLRGH 900

Query: 543 SERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           SE+LA+ YGL+++  GT LRV KNLR+C DCH   K+IS++ +REIVVRD  R+HHFK+G
Sbjct: 901 SEKLAITYGLIRTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNG 960

Query: 603 KCSCNDFW 610
            CSC D+W
Sbjct: 961 FCSCGDYW 968



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 136/551 (24%), Positives = 232/551 (42%), Gaps = 84/551 (15%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VCAR +     K +H   +KL L +   + N L+D Y KC  +  A  + +    ++ 
Sbjct: 296 LPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNV 355

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALD-KLQPDHFVFASLVKACGSLGATRLGKQVH 128
           VSW +++  ++ A    KT  +   MLA    L+ D     + V  C         K++H
Sbjct: 356 VSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELH 415

Query: 129 ACFVLSPFC-DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
              +   F  ++++V ++ V  YAKCG  + A  VF SI+ K   SW A++  Y++S   
Sbjct: 416 CYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSS-- 473

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
                                       R  +DA++   +M+  G+ + D   + S++ A
Sbjct: 474 --------------------------DPRLSLDAYF---QMKSSGL-LPDLFTVCSLLSA 503

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
           C+    L+LGK++HGL+I    E   F+  +++ +Y  C ++  A  +F  M  K +VSW
Sbjct: 504 CSQIKSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSW 563

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK----LFK 363
            +++ G  Q+G  E  L+L+ +MV  GV+P E++ + +  ACS +  +  GR+      K
Sbjct: 564 NTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLGREAHGYALK 623

Query: 364 SMIEDYGITPS------------LQHYTCLLDLLSRS--------------GHLDEAENL 397
            ++ED                  ++ +     L  RS              G   EA  L
Sbjct: 624 CLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEAIKL 683

Query: 398 IKAMPFE---PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS--SYILLSNVYA 452
            + M      PDE T+  +L+AC H      G    + + +L   +P+   Y  + ++  
Sbjct: 684 FEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVIDMLV 743

Query: 453 SAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF-----------GKGSHIFYAGETSHPLKD 501
            A       K+    +  E+ +EPG     F             G  I      S P K 
Sbjct: 744 RAGKLDEALKI----ATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLFVSEPEKP 799

Query: 502 EIFELLTELDA 512
           E + LL+ L A
Sbjct: 800 ENYVLLSNLYA 810



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 151/312 (48%), Gaps = 30/312 (9%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   +I  Y  C     +  + + + +++   W +++++Y++  L    + +F  M+   
Sbjct: 119 LCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITES 178

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            L PD+F F  +VKAC  +   ++G  VH   V +   +D  V ++LV  Y   G  ++A
Sbjct: 179 GLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDA 238

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
             VF  +  +N VSW +M+  ++ +G  ++   +  Q               +++  +EI
Sbjct: 239 LRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQ---------------MMEKDDEI 283

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
            AF              D   L++++  CA    + +GK +HGL + L  +  + ++NA+
Sbjct: 284 -AFTP------------DVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNAL 330

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG--VKP 337
           +DMY+KC  I  A+ IF     K+VVSW +++ G +  G   +T  L  +M++ G  ++ 
Sbjct: 331 MDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRA 390

Query: 338 NEVTFVGLIYAC 349
           +EVT +  +  C
Sbjct: 391 DEVTILNAVPVC 402



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/390 (25%), Positives = 169/390 (43%), Gaps = 40/390 (10%)

Query: 17  QIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASIL 76
           Q+ L V   H  ++K  L +   + N L+  YG    V  A  + + MP+R+ VSW S++
Sbjct: 201 QVGLAV---HGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMI 257

Query: 77  TAYNQANLPQKTISIFSTMLALDK---LQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
             ++   L ++   +   M+  D      PD    A+++  C       +GK VH   + 
Sbjct: 258 RVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMK 317

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
                + VV ++L+DMY+KCG  N+A+ +F     KN VSW  M+  ++ +G      ++
Sbjct: 318 LSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDL 377

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLSSIVGACANFA 252
             Q                               M   G D+  D + + + V  C   +
Sbjct: 378 LRQ-------------------------------MLAGGGDLRADEVTILNAVPVCFEES 406

Query: 253 VLELGKQIHGLVIALGY-ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
           VL   K++H   +   +  +   ++NA V  YAKC  +  A  +F  +R K V SW ++I
Sbjct: 407 VLPNLKELHCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALI 466

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G +Q      +L  Y +M S+G+ P+  T   L+ ACS +  +  G+++   +I +   
Sbjct: 467 GGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLE 526

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
             S   Y  LL L    G L  A  L  AM
Sbjct: 527 RDSFV-YISLLSLYIHCGELSTAHVLFDAM 555



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 141/330 (42%), Gaps = 46/330 (13%)

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLV-----KACGSLGATRLGKQVHACFVLSP- 135
            N PQ  + +       +K   D F+          +A G     +LG+++H     S  
Sbjct: 53  GNPPQGVLQVIEEFDREEKSSSDAFLLLREALGLLLQASGRRKDIQLGRKIHQLVSESAR 112

Query: 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
             +DDV+ + ++ MY+ CG P+                               D+  +F+
Sbjct: 113 LSNDDVLCTRVITMYSMCGSPD-------------------------------DSRSVFD 141

Query: 196 QAPVRNLFLWTALVSGLVQSRNEI--DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
               +NLF W A++S    SRNE+  +    F++M  E   + D      +V ACA  + 
Sbjct: 142 ALRKKNLFQWNAVISSY--SRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSE 199

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           +++G  +HGLV+       +F+SNA+V  Y     +  A  +F  M  +++VSW S+I  
Sbjct: 200 VQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRV 259

Query: 314 TAQHGQAEETLALYDEMVSA----GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
            + +G +EE   L  +M+         P+  T   ++  C+    +G G+ +   +    
Sbjct: 260 FSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGV-HGLAMKL 318

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
            +   +     L+D+ S+ G +++A+ + K
Sbjct: 319 SLDKEVVVNNALMDMYSKCGCINDAQVIFK 348


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 220/598 (36%), Positives = 343/598 (57%), Gaps = 35/598 (5%)

Query: 14  ARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWA 73
           AR    L    +HA  +K GL     + N+L+D Y K   ++Y   + ++MP +D VSW 
Sbjct: 430 ARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWT 489

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           +I+  + Q     + + +F   + L+ +  D  + +S++ AC  L      K++H+ +++
Sbjct: 490 TIIAGHAQNGSHSRALELFRE-VQLEGIDLDVMMISSILLACSGLKLISSVKEIHS-YII 547

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
                D V+++ +VD+Y +CG  + A  +F+ I+ K+ VSWT+M+S Y  +G   +A+E+
Sbjct: 548 RKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALEL 607

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
           F                                 M+  GV+  D + L SI+ A A+ + 
Sbjct: 608 FHL-------------------------------MKETGVE-PDSISLVSILSAAASLSA 635

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L+ GK+IHG +I  G+     +++ +VDMYA+C  +  ++++F  +R KD+V WTS+I  
Sbjct: 636 LKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINA 695

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
              HG     + L+  M    + P+ + FV ++YACSH GL+ +GR+  +SM  +Y + P
Sbjct: 696 YGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEP 755

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
             +HY CL+DLL R+ HL+EA   +K M  EP    W ALL AC+ H N E+G   A  L
Sbjct: 756 WPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKL 815

Query: 434 LSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAG 493
           L + PE+P +Y+L+SNVYA+   W+ V +VR  M    +KK PG S+IE G   H F A 
Sbjct: 816 LEMDPENPGNYVLVSNVYAAERRWKDVEEVRMRMKASGLKKNPGCSWIEVGNKVHTFMAR 875

Query: 494 ETSHPLKDEIFELLTELDAEM-KRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGL 552
           + SHP   EI+  L+++  ++ K  GYV  T  VLH+ +++EK + L+ HSERLA+AYG+
Sbjct: 876 DKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGM 935

Query: 553 LKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           L +  G  LR+ KNLRVCGDCH   K+IS+  +RE+V+RDA R+HHFK G CSC D W
Sbjct: 936 LTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 993



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 192/419 (45%), Gaps = 39/419 (9%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKL-GLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           Y   L +C   +     + +HA +I    L     L   L+  YGKC  +  A  L + M
Sbjct: 117 YSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGM 176

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           P +   +W +++ AY     P  ++ ++  M  +  +  D   F  ++KACG L   R G
Sbjct: 177 PHKTIFTWNAMIGAYVTNGEPLGSLELYREM-RVSGIPLDACTFPCILKACGLLKDRRCG 235

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYAR 183
            +VH   +   +     V +S+V MY KC   N AR +FD +  K + VSW +M+SAY+ 
Sbjct: 236 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 295

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           +G+  +A+ +F                G +Q  +     Y+F+                +
Sbjct: 296 NGQSIEALRLF----------------GEMQKASLAPNTYTFV----------------A 323

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
            + AC + + ++ G  IH  V+   Y   +F++NA++ MYA+   +  A +IF  M   D
Sbjct: 324 ALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWD 383

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
            +SW S++ G  Q+G   E L  Y EM  AG KP+ V  + +I A +  G    G ++  
Sbjct: 384 TISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHA 443

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
             +++ G+   LQ    L+D+ ++   +   + +   MP + D  +W  +++   H +N
Sbjct: 444 YAMKN-GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVVSWTTIIAG--HAQN 498



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 193/425 (45%), Gaps = 38/425 (8%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR-DHVSWASILTAYNQAN 83
           +H   IK G      + N+++  Y KC+ +  A  L + MP++ D VSW S+++AY+   
Sbjct: 238 VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 297

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
              + + +F  M     L P+ + F + ++AC      + G  +HA  + S +  +  V 
Sbjct: 298 QSIEALRLFGEMQKAS-LAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVA 356

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           ++L+ MYA                               R G+  +A  IF      +  
Sbjct: 357 NALIAMYA-------------------------------RFGKMGEAANIFYNMDDWDTI 385

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            W +++SG VQ+    +A   + EMR  G    D + + SI+ A A       G QIH  
Sbjct: 386 SWNSMLSGFVQNGLYHEALQFYHEMRDAGQK-PDLVAVISIIAASARSGNTLNGMQIHAY 444

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
            +  G +S L + N++VDMYAK   +     IF +M  KDVVSWT+II G AQ+G     
Sbjct: 445 AMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRA 504

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           L L+ E+   G+  + +    ++ ACS + L+   +++   +I        LQ+   ++D
Sbjct: 505 LELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQN--GIVD 562

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           +    G++D A  + + + F+ D  +W +++S C  H           HL+     +P S
Sbjct: 563 VYGECGNVDYAARMFELIEFK-DVVSWTSMIS-CYVHNGLANEALELFHLMKETGVEPDS 620

Query: 444 YILLS 448
             L+S
Sbjct: 621 ISLVS 625


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/601 (34%), Positives = 339/601 (56%), Gaps = 34/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CA+ +     + +HA +          L N+LI  Y KC  V  A  + +EM ++D 
Sbjct: 58  ITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDM 117

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S++  Y Q ++P++ I +   ML   + +P+ F FASL+KA G+   + +G+Q+HA
Sbjct: 118 VSWTSLIAGYAQNDMPEEAIGLLPGMLK-GRFKPNGFTFASLLKAAGAHADSGIGRQIHA 176

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V   + +D  V S+L+DMYA                               R G    
Sbjct: 177 LAVKCDWHEDVYVGSALLDMYA-------------------------------RCGMMDM 205

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F++   +N   W AL+SG  +  +   A  +F EM R G +       SS+  + A
Sbjct: 206 ATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATH-FTYSSVFSSIA 264

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LE GK +H  +I    +   F  N ++DMYAK   +I A+ +F R+  KD+V+W +
Sbjct: 265 RLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNT 324

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           ++   AQ+G  +E ++ ++EM  +G+  N+VTF+ ++ ACSH GLV +G++ F+ M+++Y
Sbjct: 325 MLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACSHGGLVKEGKRYFE-MMKEY 383

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            + P + H+  ++ LL R+G L+ A   I  MP EP    W ALL+AC+ H+N ++G   
Sbjct: 384 DLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVWGALLAACRMHKNAKVGQFA 443

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A+H+  L P+D    +LL N+YAS   W   ++VR++M    VKKEP  S++E     H+
Sbjct: 444 ADHVFELDPDDSGPPVLLYNIYASTGQWDAAARVRRIMKTTGVKKEPACSWVEMENSVHM 503

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F A + +HP  +EI+++  ++  ++++ GYVPD   VL  ++ +E+E  L +HSE+LA+A
Sbjct: 504 FVANDDTHPRAEEIYKMWGQISKKIRKEGYVPDMDYVLLRVDDQEREANLQYHSEKLALA 563

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + L++   G  +R++KN+R+CGDCH   K IS++  REIVVRD  R+HHF +G CSC D+
Sbjct: 564 FALIEMPAGATIRIMKNIRICGDCHSAFKYISKVFGREIVVRDTNRFHHFSNGSCSCADY 623

Query: 610 W 610
           W
Sbjct: 624 W 624



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 83/343 (24%), Positives = 163/343 (47%), Gaps = 37/343 (10%)

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
           +L   +L P   V+ + + AC         ++VHA    S F  D  + +SL+ +Y KCG
Sbjct: 41  LLDAGELAPTPRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCG 100

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
               AR VFD ++ K+ VSWT++++ YA++   ++A+                L+ G+++
Sbjct: 101 SVLEARKVFDEMRRKDMVSWTSLIAGYAQNDMPEEAI---------------GLLPGMLK 145

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF 274
            R + + F                   +S++ A    A   +G+QIH L +   +   ++
Sbjct: 146 GRFKPNGF-----------------TFASLLKAAGAHADSGIGRQIHALAVKCDWHEDVY 188

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
           + +A++DMYA+C  +  A  +F ++  K+ VSW ++I G A+ G  E  L  + EM+  G
Sbjct: 189 VGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNG 248

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
            +    T+  +  + + +G + +G+ +   MI+      +    T LLD+ ++SG + +A
Sbjct: 249 FEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMTAFAGNT-LLDMYAKSGSMIDA 307

Query: 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
             +   +  + D  TW  +L+A   +    +G    +H   ++
Sbjct: 308 RKVFDRVD-DKDLVTWNTMLTAFAQY---GLGKEAVSHFEEMR 346



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 107/223 (47%), Gaps = 14/223 (6%)

Query: 238 PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297
           P V  + + ACA    LE  +++H  + +  +    F+ N+++ +Y KC  ++ A+ +F 
Sbjct: 51  PRVYHTFITACAQSKNLEDARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFD 110

Query: 298 RMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357
            MRRKD+VSWTS+I G AQ+   EE + L   M+    KPN  TF  L+ A       G 
Sbjct: 111 EMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSGI 170

Query: 358 GRKLFKSMI-----EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           GR++    +     ED  +       + LLD+ +R G +D A  +   +    +  +W A
Sbjct: 171 GRQIHALAVKCDWHEDVYVG------SALLDMYARCGMMDMATAVFDKLD-SKNGVSWNA 223

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
           L+S      + E        +L    E  +++   S+V++S A
Sbjct: 224 LISGFARKGDGETALMTFAEMLRNGFE--ATHFTYSSVFSSIA 264


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/606 (35%), Positives = 340/606 (56%), Gaps = 14/606 (2%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEM 64
           Y   L  CAR       K LHAQ+I+  L    P + + L++ Y KC   + A  +   +
Sbjct: 273 YTSSLTACARLSSLRWGKQLHAQVIR-NLPCIDPYVASALVELYAKCGCFKEAKGVFNSL 331

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
             R++V+W  ++  + Q     +++ +F+ M A + +  D F  A+L+  C S     LG
Sbjct: 332 HDRNNVAWTVLIAGFLQHGCFTESVELFNQMRA-ELMTLDQFALATLISGCCSRMDLCLG 390

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           +Q+H+  + S      VV +SL+ MYAKC    +A ++F  +  K+ VSWT+M++A+++ 
Sbjct: 391 RQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQV 450

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G    A E F+    +N+  W A++   +Q   E D    +  M  E     D +   ++
Sbjct: 451 GNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTL 510

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
              CA+    +LG QI G  + +G      ++NA++ MY+KC  I+ A+ +F  +  KD+
Sbjct: 511 FKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVFDFLNVKDI 570

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           VSW ++I G +QHG  ++ + ++D+++  G KP+ +++V ++  CSH GLV +G+  F  
Sbjct: 571 VSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDM 630

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           M   + I+P L+H++C++DLL R+GHL EA++LI  MP +P    W ALLSACK H N E
Sbjct: 631 MKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSACKIHGNNE 690

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +    A H+  L   D  SY+L++ +YA A      +++RKLM    +KK PGYS++E  
Sbjct: 691 LAELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVN 750

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
              H+F A + SHP    I + L EL  ++ R GYV           + +  R    HSE
Sbjct: 751 NKVHVFKADDVSHPQVIAIRKKLDELMEKIARLGYV-----------RTDSPRSEIHHSE 799

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           +LAVA+GL+       + ++KNLR+CGDCH V+K+IS +T RE V+RDA R+HHF  G C
Sbjct: 800 KLAVAFGLMSLPAWMPIHIMKNLRICGDCHTVIKLISSVTGREFVIRDAVRFHHFNGGSC 859

Query: 605 SCNDFW 610
           SC D+W
Sbjct: 860 SCGDYW 865



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 135/504 (26%), Positives = 220/504 (43%), Gaps = 70/504 (13%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCD---------LVQYAH-- 58
           LR C         + LH +++ +GL     L NTL+ AY  C          L   AH  
Sbjct: 11  LRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPN 70

Query: 59  ---------------------HLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLA 97
                                 L   MP RD  SW ++++ Y Q+     ++  F +M  
Sbjct: 71  VITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHR 130

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
                P+ F FA  +K+CG+LG   L  Q+          DD  V ++LVDM+ +CG  +
Sbjct: 131 SGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVD 190

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
            A  +F  IK        +ML  Y ++     A+E+F+  P R++  W  +VS L QS  
Sbjct: 191 LASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGR 250

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL--FI 275
             +A    ++M+ +GV + D    +S + ACA  + L  GKQ+H  VI      C+  ++
Sbjct: 251 VREALDMVVDMQSKGVRL-DSTTYTSSLTACARLSSLRWGKQLHAQVIR--NLPCIDPYV 307

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
           ++A+V++YAKC     AK +F  +  ++ V+WT +I G  QHG   E++ L+++M +  +
Sbjct: 308 ASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELM 367

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLF---------------KSMIEDYGITPSLQ---- 376
             ++     LI  C     +  GR+L                 S+I  Y    +LQ    
Sbjct: 368 TLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAES 427

Query: 377 -----------HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
                       +T ++   S+ G++ +A      M  + +  TW A+L A   H   E 
Sbjct: 428 IFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTK-NVITWNAMLGAYIQHGAEED 486

Query: 426 GTRVANHLLSLKPEDPS--SYILL 447
           G R+ N +LS K   P   +Y+ L
Sbjct: 487 GLRMYNVMLSEKDVRPDWVTYVTL 510



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/512 (25%), Positives = 234/512 (45%), Gaps = 83/512 (16%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+++  Y K   V +A  L + MP+RD VSW  +++A +Q+   ++ + +   M +   +
Sbjct: 208 NSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQS-KGV 266

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           + D   + S + AC  L + R GKQ+HA  + +  C D  V S+LV++YAKCG    A+ 
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKG 326

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF+S+  +N+V+WT +++ + + G   +++E+F Q                         
Sbjct: 327 VFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQ------------------------- 361

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
                 MR E +  +D   L++++  C +   L LG+Q+H L +  G    + +SN+++ 
Sbjct: 362 ------MRAE-LMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLIS 414

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA-------------------------- 315
           MYAKC ++ +A+ IF  M  KD+VSWTS+I   +                          
Sbjct: 415 MYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQVGNIAKAREFFDGMSTKNVITWNAM 474

Query: 316 -----QHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
                QHG  E+ L +Y+ M+S   V+P+ VT+V L   C+ +G    G ++    ++  
Sbjct: 475 LGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVTYVTLFKGCADLGANKLGDQIIGRTVK-V 533

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G+         ++ + S+ G + EA  +   +  + D  +W A+++    H   +    +
Sbjct: 534 GLILDTSVANAVITMYSKCGRILEARKVFDFLNVK-DIVSWNAMITGYSQHGMGKQAIEI 592

Query: 430 ANHLL--SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE----- 482
            + +L    KP+  S   +LS    S  + +  S    +  V  +   PG  +       
Sbjct: 593 FDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKSYFDMMKRVHNI--SPGLEHFSCMVDL 650

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEM 514
            G+  H+  A       KD I E+  +  AE+
Sbjct: 651 LGRAGHLTEA-------KDLIDEMPMKPTAEV 675



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 157/347 (45%), Gaps = 38/347 (10%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG-LPNNARAVFDSI 166
           FA  +++CG+ GA    + +H   V         ++++L+  Y  CG LP+  R +   I
Sbjct: 7   FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDI 66

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
              N ++   ML+ Y + GR  DA+E+F + P R++  W  L+SG  QS+  + +  SF+
Sbjct: 67  AHPNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFV 126

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            M R G    +    +  + +C       L  Q+ G+V   G +    ++ A+VDM+ +C
Sbjct: 127 SMHRSGDSSPNAFTFAYAMKSCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRC 186

Query: 287 SDIIAAKDIFGRMR-------------------------------RKDVVSWTSIIVGTA 315
             +  A  +F R++                                +DVVSW  ++   +
Sbjct: 187 GTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 246

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
           Q G+  E L +  +M S GV+ +  T+   + AC+ +  +  G++L   +I +    P +
Sbjct: 247 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL---PCI 303

Query: 376 QHY--TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
             Y  + L++L ++ G   EA+ +  ++  + +   W  L++    H
Sbjct: 304 DPYVASALVELYAKCGCFKEAKGVFNSL-HDRNNVAWTVLIAGFLQH 349


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/605 (35%), Positives = 339/605 (56%), Gaps = 12/605 (1%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   L  CAR       K LHAQ+I+   H    + + L++ Y K    + A  +   + 
Sbjct: 293 YTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLH 352

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            R++V+W  +++ + Q     +++ +F+ M A + +  D F  A+L+  C S     LG+
Sbjct: 353 DRNNVAWTVLISGFLQYGCFTESVELFNQMRA-ELMTLDQFALATLISGCCSRMDLCLGR 411

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q+H+  + S      VV +SL+ MYAKC    +A A+F  +  K+ VSWT+M++AY++ G
Sbjct: 412 QLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVG 471

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
               A E F+    +N+  W A++   +Q   E D    +  M  E     D +   ++ 
Sbjct: 472 NVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTLF 531

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
             CA+    +LG QI G  + +G      ++NA++ MY+KC  I+ A+ +F  +  KD+V
Sbjct: 532 KGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVFDFLNVKDIV 591

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SW ++I G +QHG  ++ + ++D+++  G KP+ +++V ++  CSH GLV +G+  F  M
Sbjct: 592 SWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQEGKFYFDMM 651

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
              + I+P L+H++C++DLL R+GHL EA++LI  MP +P    W ALLSACK H N E+
Sbjct: 652 KRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSACKIHGNNEL 711

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
               A H+  L   D  SY+L++ +YA A      +++RKLM    +KK PGYS++E   
Sbjct: 712 AELAAKHVFELDSPDSGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKNPGYSWMEVDN 771

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H+F A + SHP    I + L EL  ++ R GYV           + +  R    HSE+
Sbjct: 772 KVHVFKADDVSHPQVLAIRKKLDELMEKIARLGYV-----------RTDSTRSEIHHSEK 820

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LAVA+GL+       + ++KNLR+CGDCH V+K+IS +T RE V+RDA R+HHF  G CS
Sbjct: 821 LAVAFGLMTLPTWMPIHIMKNLRICGDCHTVIKLISTVTGREFVIRDAVRFHHFNGGSCS 880

Query: 606 CNDFW 610
           C D+W
Sbjct: 881 CGDYW 885



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 204/439 (46%), Gaps = 36/439 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +++ Y K   +  A  L   MP RD  SW ++++ Y Q+     ++  F +M      
Sbjct: 95  NVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDS 154

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P+ F  A  +K+CG+LG   L  Q+ A        DD  V ++LVDM+ +CG  + A  
Sbjct: 155 WPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASR 214

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F  IK        +ML+ Y ++     A+E+F+  P R++  W  +VS L QS    +A
Sbjct: 215 LFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREA 274

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
               ++M+ +GV + D    +S + ACA  + L  GKQ+H  VI        ++++A+V+
Sbjct: 275 LDMVVDMQSKGVRL-DSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVE 333

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           +YAK      AK +F  +  ++ V+WT +I G  Q+G   E++ L+++M +  +  ++  
Sbjct: 334 LYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFA 393

Query: 342 FVGLIYACSHVGLVGKGRKLF---------------KSMIEDYGITPSLQ---------- 376
              LI  C     +  GR+L                 S+I  Y    +LQ          
Sbjct: 394 LATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMN 453

Query: 377 -----HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
                 +T ++   S+ G++ +A      M  E +  TW A+L A   H   E G R+  
Sbjct: 454 EKDIVSWTSMITAYSQVGNVAKAREFFDGMS-EKNVITWNAMLGAYIQHGAEEDGLRMYK 512

Query: 432 HLLS---LKPEDPSSYILL 447
            +LS   ++P D  +Y+ L
Sbjct: 513 VMLSEEYVRP-DWVTYVTL 530



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 157/343 (45%), Gaps = 38/343 (11%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF-DSI 166
           FA  +++CG+ GA    + +H   V         ++++L+  Y  CG  ++AR +    I
Sbjct: 27  FADALRSCGARGALAGARALHGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDI 86

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
              N ++   ML+ YA+ GR  DA+E+F + P R++  W  L+SG  QSR  + +  +F+
Sbjct: 87  AHPNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFL 146

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            M R G    +   L+  + +C       L  Q+  +V     +    ++ A+VDM+ +C
Sbjct: 147 SMHRSGDSWPNAFTLACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRC 206

Query: 287 SDIIAAKDIFGRMR-------------------------------RKDVVSWTSIIVGTA 315
             +  A  +F R++                                +DVVSW  ++   +
Sbjct: 207 GAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALS 266

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
           Q G+  E L +  +M S GV+ +  T+   + AC+ +  +  G++L   +I +    P +
Sbjct: 267 QSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL---PHI 323

Query: 376 QHY--TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             Y  + L++L ++SG   EA+ +  ++  + +   W  L+S 
Sbjct: 324 DPYVASALVELYAKSGCFKEAKGVFNSL-HDRNNVAWTVLISG 365


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/551 (38%), Positives = 325/551 (58%), Gaps = 40/551 (7%)

Query: 60  LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
           + E MP++D VSW +I+    +  L ++T+ +   M   + L+PD F  +S++       
Sbjct: 195 IFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGAN-LKPDSFTLSSVLPLIAENV 253

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
               GK++H C +      D  V SSL+DMYAKC    ++  VF  +  ++ +SW ++++
Sbjct: 254 DISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIA 313

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
              ++G   + +  F Q           ++   ++ ++     YSF              
Sbjct: 314 GCVQNGLFDEGLRFFRQ-----------MLMAKIKPKS-----YSF-------------- 343

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
             SSI+ ACA+   L LGKQ+HG +   G++  +FI++++VDMYAKC +I  AK IF RM
Sbjct: 344 --SSIMPACAHLTTLHLGKQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRM 401

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
           R +D+VSWT++I+G A HGQA + + L+++M + G+K        ++ ACSH GLV +  
Sbjct: 402 RLRDMVSWTAMIMGCALHGQAPDAIELFEQMETEGIK-------AVLTACSHGGLVDEAW 454

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           K F SM  D+GI P ++HY  + DLL R+G L+EA + I  M   P    WA LLSAC+ 
Sbjct: 455 KYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRV 514

Query: 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
           H+N +M  +VAN +L + P +  +YILL+N+Y++A  W+  +K R  M  + ++K P  S
Sbjct: 515 HKNIDMAEKVANRILEVDPNNTGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACS 574

Query: 480 YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL 539
           +IE     + F AG+ SHP  ++I E +  L   M++ GYVPDTS V HD+E+++K+  +
Sbjct: 575 WIEVKNKVYAFMAGDESHPCYEKIREAMEVLVELMEKEGYVPDTSEVHHDVEEEQKKYLV 634

Query: 540 FWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
             HSERLA+ +G++ +  G  +RV KNLRVC DCH   K IS+I  REIVVRD +R+HHF
Sbjct: 635 CSHSERLAIVFGIINTPAGMTIRVTKNLRVCTDCHTATKFISKIVGREIVVRDNSRFHHF 694

Query: 600 KDGKCSCNDFW 610
           K+G CSC D+W
Sbjct: 695 KNGTCSCGDYW 705



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 109/409 (26%), Positives = 202/409 (49%), Gaps = 26/409 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHAQ++K          + L+  Y   +L+  +  L   +     ++W S++  Y   
Sbjct: 26  QQLHAQVLKFQASSL-CNLSLLLSIYSHINLLHDSLRLFNTIHFPPALAWKSVIRCYTSH 84

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            LP +++  F  MLA   L PDH VF S++K+C  L    LG+ +H   +      D   
Sbjct: 85  GLPHQSLGSFIGMLA-SGLYPDHNVFPSVLKSCALLMDLNLGESLHGYIIRVGLDFDLYT 143

Query: 143 KSSLVDMYAKCGLPN-------NARAVFDSIKLKN-SVSWTAMLSAYARSGRKKDAMEIF 194
            ++L++MY+K             A  VFD +  +  SV   ++LS       +    +IF
Sbjct: 144 GNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVLS-------EDSVRKIF 196

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE--GVDIV-DPLVLSSIVGACANF 251
           E  P ++L  W  +++G   +RN +  +   + M RE  G ++  D   LSS++   A  
Sbjct: 197 EMMPEKDLVSWNTIIAG--NARNGL--YEETLRMIREMGGANLKPDSFTLSSVLPLIAEN 252

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
             +  GK+IHG  I  G ++ ++++++++DMYAKC+ +  +  +F  +  +D +SW SII
Sbjct: 253 VDISRGKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSII 312

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G  Q+G  +E L  + +M+ A +KP   +F  ++ AC+H+  +  G++L    I   G 
Sbjct: 313 AGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQL-HGYITRNGF 371

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
             ++   + L+D+ ++ G++  A+ +   M    D  +W A++  C  H
Sbjct: 372 DENIFIASSLVDMYAKCGNIRTAKQIFDRMRLR-DMVSWTAMIMGCALH 419



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 65/174 (37%), Positives = 100/174 (57%), Gaps = 1/174 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   I+ GL     + ++LID Y KC  V  +  +   + +RD +SW SI+    Q 
Sbjct: 259 KEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQN 318

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            L  + +  F  ML + K++P  + F+S++ AC  L    LGKQ+H     + F ++  +
Sbjct: 319 GLFDEGLRFFRQML-MAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYITRNGFDENIFI 377

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
            SSLVDMYAKCG    A+ +FD ++L++ VSWTAM+   A  G+  DA+E+FEQ
Sbjct: 378 ASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQ 431



 Score = 41.6 bits (96), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 34/73 (46%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LH  I + G  +   + ++L+D Y KC  ++ A  + + M  RD VSW +++      
Sbjct: 360 KQLHGYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALH 419

Query: 83  NLPQKTISIFSTM 95
                 I +F  M
Sbjct: 420 GQAPDAIELFEQM 432


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/596 (38%), Positives = 348/596 (58%), Gaps = 11/596 (1%)

Query: 22  VKTLHAQIIKLGL----HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILT 77
           +K +HAQ++  G+    H +G    T+  A      + YA+ LL         +  S++ 
Sbjct: 25  MKQIHAQLVVKGILNNPHFHGQFVATI--ALHNTTNLDYANKLLNHNNNPTLFTLNSMIR 82

Query: 78  AYNQANLPQKTISIFSTML--ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP 135
           AY++++ P K+   ++ +L    + L PD++ F  LV+ C  L A   G  VH   +   
Sbjct: 83  AYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVTGLCVHGAVIKHG 142

Query: 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
           F  D  V++ LV MYA+ G  ++   VFD     + V+ TAML+A A+ G    A ++F+
Sbjct: 143 FELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACAKCGDIDFARKMFD 202

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
           + P R+   W A+++G  Q     +A   F  M+ EGV + + + +  ++ AC +  VL+
Sbjct: 203 EMPERDHVTWNAMIAGYAQCGRSREALDVFHLMQMEGVKL-NEVSMVLVLSACTHLQVLD 261

Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
            G+ +H  V        + +  A+VDMYAKC ++  A  +F  M+ ++V +W+S I G A
Sbjct: 262 HGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNVYTWSSAIGGLA 321

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
            +G  EE+L L+++M   GV+PN +TF+ ++  CS VGLV +GRK F SM   YGI P L
Sbjct: 322 MNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQL 381

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
           +HY  ++D+  R+G L EA N I +MP  P    W+ALL AC+ ++N E+G      ++ 
Sbjct: 382 EHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKNKELGEIAQRKIVE 441

Query: 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGET 495
           L+ ++  +Y+LLSN+YA    W+ VS +R+ M    VKK PG S IE     H F  G+ 
Sbjct: 442 LEDKNDGAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCSVIEVDGEVHEFIVGDK 501

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKS 555
           SHP  DEI   L E+   ++  GYV +T+ VL D+E++EKE  L  HSE++A+A+GL+ S
Sbjct: 502 SHPRYDEIEMKLEEISKCLRLSGYVANTNPVLFDIEEEEKEDALSKHSEKVAIAFGLI-S 560

Query: 556 VPGTV-LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + G V +RVV NLR+C DCH V KMIS+I  REI+VRD  R+HHFKDG+CSC D+W
Sbjct: 561 LKGVVPIRVVMNLRICWDCHNVAKMISKIFNREIIVRDRNRFHHFKDGECSCKDYW 616



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 73/335 (21%), Positives = 138/335 (41%), Gaps = 66/335 (19%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLH-----------QYGPL------------------ 40
           +R CA+ Q  +T   +H  +IK G              Y  L                  
Sbjct: 119 VRTCAQLQAHVTGLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDL 178

Query: 41  --PNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                +++A  KC  + +A  + +EMP+RDHV+W +++  Y Q    ++ + +F  M  +
Sbjct: 179 VTQTAMLNACAKCGDIDFARKMFDEMPERDHVTWNAMIAGYAQCGRSREALDVFHLM-QM 237

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           + ++ +      ++ AC  L     G+ VHA            + ++LVDMYAKCG  + 
Sbjct: 238 EGVKLNEVSMVLVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDR 297

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A  VF  +K +N  +W++ +   A +G  ++++++F                        
Sbjct: 298 AMQVFWGMKERNVYTWSSAIGGLAMNGFGEESLDLFN----------------------- 334

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG-KQIHGLVIALGYESCLFISN 277
                   +M+REGV   + +   S++  C+   ++E G K    +    G    L    
Sbjct: 335 --------DMKREGVQ-PNGITFISVLKGCSVVGLVEEGRKHFDSMRNVYGIGPQLEHYG 385

Query: 278 AIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSII 311
            +VDMY +   +  A +    M  R  V +W++++
Sbjct: 386 LMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALL 420



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 89/195 (45%), Gaps = 10/195 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C   Q+    + +HA + +  +     L   L+D Y KC  V  A  +   M +R+ 
Sbjct: 251 LSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKERNV 310

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ--- 126
            +W+S +         ++++ +F+ M   + +QP+   F S++K C  +G    G++   
Sbjct: 311 YTWSSAIGGLAMNGFGEESLDLFNDM-KREGVQPNGITFISVLKGCSVVGLVEEGRKHFD 369

Query: 127 -VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSV-SWTAMLSAYARS 184
            +   + + P  +       +VDMY + G    A    +S+ ++  V +W+A+L A  R 
Sbjct: 370 SMRNVYGIGPQLEH---YGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHA-CRM 425

Query: 185 GRKKDAMEIFEQAPV 199
            + K+  EI ++  V
Sbjct: 426 YKNKELGEIAQRKIV 440


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/581 (37%), Positives = 336/581 (57%), Gaps = 55/581 (9%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+  Y +  ++  A  + ++MP+R+ VSW +++  Y Q  L ++   +F  M      
Sbjct: 29  NGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEGLIEEAELLFWRM------ 82

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P+  V +  V   G +   R+                                 + AR 
Sbjct: 83  -PERNVVSWTVMLGGLIEDGRV---------------------------------DEARQ 108

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSG---------- 211
           +FD + +K+ V+ T M+      GR  +A EIF++ P RN+  WT+++SG          
Sbjct: 109 LFDMMPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTM 168

Query: 212 -LVQSRN--EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
             +  R   E++A   F  M+REGV    P V+ S++  C + A L+ G+Q+H  ++   
Sbjct: 169 IKIYERKGFELEALALFSLMQREGVRPSFPSVI-SVLSVCGSLASLDHGRQVHSQLVRSQ 227

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
           ++  +++S+ ++ MY KC D++ AK +F R   KD+V W SII G AQHG  E+ L ++ 
Sbjct: 228 FDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFH 287

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
           +M S+ + P+E+TF+G++ ACS+ G V +G ++F+SM   Y + P  +HY C++DLL R+
Sbjct: 288 DMFSSSIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRA 347

Query: 389 GHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
           G L+EA NLI+ MP E D   W ALL AC+ H+N ++    A  LL L+P +   YILLS
Sbjct: 348 GKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNNAGPYILLS 407

Query: 449 NVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFY-AGETSHPLKDEIFELL 507
           N+Y+S + W+ V ++RK M    ++K PG S+IE  K  HIF   G TSHP  + I + L
Sbjct: 408 NLYSSQSRWKDVVELRKTMRAKNLRKSPGCSWIEVDKKVHIFSGGGSTSHPEHEMILKKL 467

Query: 508 TELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNL 567
            +L A ++  GY PD S V+HD++++EK   L  HSE+LAVAYGLLK   G  +RV+KNL
Sbjct: 468 GKLGALLREAGYCPDGSFVMHDVDEEEKVHSLRDHSEKLAVAYGLLKVPEGMPIRVMKNL 527

Query: 568 RVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           RVCGD H  +K+I+++T REI++RD  R+HHFKDG CSC+D
Sbjct: 528 RVCGDSHSTIKLIAQVTGREIILRDTNRFHHFKDGLCSCSD 568



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/340 (20%), Positives = 140/340 (41%), Gaps = 55/340 (16%)

Query: 150 YAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALV 209
           Y +   P  AR +FD +   N++SW  ++S Y ++G   +A ++F++ P RN+  WTA++
Sbjct: 4   YFQNKRPREARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMI 63

Query: 210 SGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY 269
            G VQ     +A   F  M    V     +  + ++G       ++  +Q+  ++     
Sbjct: 64  RGYVQEGLIEEAELLFWRMPERNV-----VSWTVMLGGLIEDGRVDEARQLFDMMPV--- 115

Query: 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE-------- 321
              +  S  ++D       +I A++IF  M +++VV+WTS+I G    G           
Sbjct: 116 -KDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIYER 174

Query: 322 -----ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE--------- 367
                E LAL+  M   GV+P+  + + ++  C  +  +  GR++   ++          
Sbjct: 175 KGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDIYV 234

Query: 368 ---------------------DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PF 403
                                D   +  +  +  ++   ++ G  ++A  +   M     
Sbjct: 235 SSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSSSI 294

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
            PDE T+  +LSAC +    + G  +   + S    DP +
Sbjct: 295 APDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKT 334


>gi|296085848|emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 237/631 (37%), Positives = 341/631 (54%), Gaps = 54/631 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPN---TLIDAYGKCDLVQYAHHLLEEMPQR-DHVSWASILTA 78
           K LHAQI++  L    P P+   T++  Y   +L+  +  +   +P     ++W SI+  
Sbjct: 25  KQLHAQILRTSL----PSPSLLSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRC 80

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
           Y    L   ++S F  MLA  K  PDH VF S++K+C  +   R G+ VH C +      
Sbjct: 81  YTSHGLFLHSLSFFIQMLASGKY-PDHNVFPSVLKSCTLMKDLRFGESVHGCIIRLGMGF 139

Query: 139 DDVVKSSLVDMYAK---CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
           D    ++L++MY+K       N  + VFD  K  +  S     S Y  S RK     +FE
Sbjct: 140 DLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRK-----VFE 194

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
             P R++  W  ++SG  Q+    DA     EM    +   D   LSS++   A +  L 
Sbjct: 195 MMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLR-PDSFTLSSVLPIFAEYVNLL 253

Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
            GK+IHG  I  GY++ +FI ++++DMYAKC+ +  +  +F  + + D +SW SII G  
Sbjct: 254 KGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCV 313

Query: 316 QHGQAEETLALYDEMVSA------------------------------------GVKPNE 339
           Q+G  +E L  + +M+ A                                    GVKPN 
Sbjct: 314 QNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRMEGVKPNY 373

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           V F+ ++ ACSH GLV +  K F SM +DY I P L+HY  + DLL R G L+EA   I 
Sbjct: 374 VAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGRVGRLEEAYEFIS 433

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
            M  EP    W+ LL+AC+ H+N E+  +V+  L ++ P++  +Y+LLSN+Y++A  W+ 
Sbjct: 434 DMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQNIGAYVLLSNIYSAAGRWKD 493

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
             K+R  M    +KK+P  S+IE     H F AG+ SHP  D I E L  L  +M+R GY
Sbjct: 494 ARKLRIAMRDKGMKKKPACSWIEIKNKVHAFVAGDKSHPYYDRINEALKVLLEQMEREGY 553

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
           V DT+ VLHD+E+++K   L  HSERLA+ +G++ +  GT +RV KNLRVC DCH   K 
Sbjct: 554 VLDTTEVLHDVEEEQKRYLLCSHSERLAITFGIISTPAGTTIRVTKNLRVCVDCHTATKF 613

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           IS+I  REIVVRD +R+HHFKDGKCSC DFW
Sbjct: 614 ISKIVGREIVVRDNSRFHHFKDGKCSCGDFW 644



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/215 (24%), Positives = 97/215 (45%), Gaps = 8/215 (3%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L + A +   L  K +H   I+ G      + ++LID Y KC  V  +  +   +PQ D 
Sbjct: 243 LPIFAEYVNLLKGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDG 302

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW SI+    Q  +  + +  F  ML + K++P+H  F+S++ AC  L    LGKQ+H 
Sbjct: 303 ISWNSIIAGCVQNGMFDEGLKFFQQML-IAKIKPNHVSFSSIMPACAHLTTLHLGKQLHG 361

Query: 130 CFV-LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSV-----SWTAMLSAYAR 183
             + +     + V   +++   +  GL + A   F+S+     +      + A+     R
Sbjct: 362 YIIRMEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLGR 421

Query: 184 SGRKKDAMEIFEQAPVRNL-FLWTALVSGLVQSRN 217
            GR ++A E      +     +W+ L++     +N
Sbjct: 422 VGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKN 456


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  417 bits (1071), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/589 (36%), Positives = 326/589 (55%), Gaps = 33/589 (5%)

Query: 22   VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
            +K  HA+I   GL     +       Y   + +  A  + E++P      W  ++  +  
Sbjct: 736  LKKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFAT 795

Query: 82   ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
                  ++ ++S M+    L+PD F F   +K+C  L   + GK +H   V     +D  
Sbjct: 796  DGRFLSSLELYSKMME-KGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLF 854

Query: 142  VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
            V ++LVDMYAKCG    AR V                               F++  VR+
Sbjct: 855  VDAALVDMYAKCGDIEAARLV-------------------------------FDKMAVRD 883

Query: 202  LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
            L  WT+++SG   +    +    F  MR  GV I + + + S++ AC N   L  G+  H
Sbjct: 884  LVSWTSMISGYAHNGYNSETLGFFDLMRSSGV-IPNRVSILSVLLACGNLGALRKGEWFH 942

Query: 262  GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
              VI  G+E  + ++ AI+DMY+KC  +  A+ +F     KD+V W+++I     HG   
Sbjct: 943  SYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGR 1002

Query: 322  ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
            + + L+D+MV AGV+P+ VTF  ++ ACSH GL+ +G+  F+ M E++ I   L +Y C+
Sbjct: 1003 KAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACM 1062

Query: 382  LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
            +DLL R+G L EA +LI+ MP EPD   W +LL AC+ H N ++  ++A+HL  L P   
Sbjct: 1063 VDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHA 1122

Query: 442  SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
              ++LLSN+YA+ + W  V KVRK+M+     K  G+S +E+    H F  G+ SHP  +
Sbjct: 1123 GYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQGFSLVEYDNQVHKFGVGDRSHPQWE 1182

Query: 502  EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            +++  L EL A MK  GYVP T  VLHD+E++ KE  L +HSERLA+A+GL+ + PGT L
Sbjct: 1183 KLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEAALSYHSERLAIAFGLINTSPGTTL 1242

Query: 562  RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            R+ KNLR+CGDCH  +K+IS+I  R I+VRD  R+H F+DG CSC D+W
Sbjct: 1243 RITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFHRFEDGVCSCGDYW 1291



 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 170/537 (31%), Positives = 278/537 (51%), Gaps = 39/537 (7%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  +I+       PL N+L++ Y K    + A +L  +MP++D +SW++++  Y     
Sbjct: 228 VHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEA 287

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
             + +++F  M+   + +P+     S ++AC        GK++H   V   F  D  V +
Sbjct: 288 ANEALNLFHEMIE-KRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVST 346

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +L+DMY KC  P+ A  +F  +  K+ VSW A+LS YA++G    +M +F     RN   
Sbjct: 347 ALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVF-----RN--- 398

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                                  M  +G+   D + +  I+ A +   + +    +HG V
Sbjct: 399 -----------------------MLSDGIQ-PDAVAVVKILAASSELGIFQQALCLHGYV 434

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           +  G+ S +F+  +++++Y+KC  +  A  +F  M  +DVV W+S+I     HG+  E L
Sbjct: 435 VRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEAL 494

Query: 325 ALYDEMV-SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
            ++D+MV ++ V+PN VTF+ ++ ACSH GLV +G K+F  M+ DY + P  +H+  ++D
Sbjct: 495 EIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVD 554

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           LL R G L +A ++I  MP       W ALL AC+ H N EMG   A +L  L P     
Sbjct: 555 LLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGY 614

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
           YILLSN+YA    W +V+++R  +    +KK  G S +E   G H F A +  HP   +I
Sbjct: 615 YILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGVHSFLASDRFHPDSQKI 674

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA-YGLLKSVPGT 559
           +ELL +L+A+M +  Y+PD   +LHD     +    FW   +   + Y  + S PGT
Sbjct: 675 YELLRKLEAQMGKEVYIPDLDFLLHDTGAVLQ----FWQRIKATESKYKTIGSAPGT 727



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/407 (27%), Positives = 200/407 (49%), Gaps = 34/407 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           + L++ Y KC  +  A  + EE  + D V W S++T Y Q N P++ +++FS M+ +D +
Sbjct: 143 SALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCV 202

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             D     S+V AC  L   + G  VH   +   F  D  + +SL+++YAK G    A  
Sbjct: 203 VLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAAN 262

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F  +  K+ +SW+ M++ YA +    +A+ +F +                         
Sbjct: 263 LFSKMPEKDVISWSTMIACYANNEAANEALNLFHE------------------------- 297

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
               IE R E     + + + S + ACA    LE GK+IH + +  G+E    +S A++D
Sbjct: 298 ---MIEKRFEP----NSVTVVSALQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALID 350

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KCS    A D+F R+ +KDVVSW +++ G AQ+G A +++ ++  M+S G++P+ V 
Sbjct: 351 MYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVA 410

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
            V ++ A S +G+  +   L   ++   G   ++     L++L S+ G L +A  L K M
Sbjct: 411 VVKILAASSELGIFQQALCLHGYVVRS-GFNSNVFVGASLIELYSKCGSLGDAVKLFKGM 469

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
               D   W+++++A   H        + + ++      P++   LS
Sbjct: 470 IVR-DVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLS 515



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/397 (28%), Positives = 192/397 (48%), Gaps = 34/397 (8%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           +V  LH+Q+ K G+         L   Y KC  +Q A  + +E P  +   W S L +Y 
Sbjct: 19  SVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYC 78

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           +    ++T+ +F  M+      PD+F     +KAC  L    LGK +H     +     D
Sbjct: 79  REKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSD 138

Query: 141 V-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
           + V S+LV++Y+KCG                               +  +A+++FE+   
Sbjct: 139 MFVGSALVELYSKCG-------------------------------QMGEALKVFEEFQR 167

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
            +  LWT++V+G  Q+ +  +A   F +M      ++DP+ L S+V ACA    ++ G  
Sbjct: 168 PDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSC 227

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           +HGLVI   ++  L + N+++++YAK      A ++F +M  KDV+SW+++I   A +  
Sbjct: 228 VHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEA 287

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
           A E L L+ EM+    +PN VT V  + AC+    + +G+K+ K  +   G        T
Sbjct: 288 ANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWK-GFELDFSVST 346

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            L+D+  +    DEA +L + +P + D  +W ALLS 
Sbjct: 347 ALIDMYMKCSCPDEAVDLFQRLP-KKDVVSWVALLSG 382



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 154/325 (47%), Gaps = 23/325 (7%)

Query: 143 KSSLVDMYAKCGLPNNARAV-------FDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
           +  LVD++  C   NN R+V       F +  L ++   T + S YA+    + A ++F+
Sbjct: 4   RQVLVDLFQAC---NNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFD 60

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
           + P  N+ LW + +    + +   +    F  M     +  D   +   + ACA   +LE
Sbjct: 61  ETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLE 120

Query: 256 LGKQIHGLVIA---LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
           LGK IHG       +G  S +F+ +A+V++Y+KC  +  A  +F   +R D V WTS++ 
Sbjct: 121 LGKVIHGFAKKNDEIG--SDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVT 178

Query: 313 GTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
           G  Q+   EE LAL+ +MV    V  + VT V ++ AC+ + L  K       ++     
Sbjct: 179 GYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQL-LNVKAGSCVHGLVIRREF 237

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
              L     LL+L +++G    A NL   MP E D  +W+ ++ AC  + N E      N
Sbjct: 238 DGDLPLVNSLLNLYAKTGCEKIAANLFSKMP-EKDVISWSTMI-AC--YANNEAANEALN 293

Query: 432 --HLLSLKPEDPSSYILLSNVYASA 454
             H +  K  +P+S  ++S + A A
Sbjct: 294 LFHEMIEKRFEPNSVTVVSALQACA 318



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 99/187 (52%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA  +     K +H   +  G      +   LID Y KC     A  L + +P++D 
Sbjct: 314 LQACAVSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDV 373

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW ++L+ Y Q  +  K++ +F  ML+ D +QPD      ++ A   LG  +    +H 
Sbjct: 374 VSWVALLSGYAQNGMAYKSMGVFRNMLS-DGIQPDAVAVVKILAASSELGIFQQALCLHG 432

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V S F  +  V +SL+++Y+KCG   +A  +F  + +++ V W++M++AY   GR  +
Sbjct: 433 YVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGE 492

Query: 190 AMEIFEQ 196
           A+EIF+Q
Sbjct: 493 ALEIFDQ 499



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 101/187 (54%), Gaps = 1/187 (0%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L+ CA        K +H  ++  G      +   L+D Y KC  ++ A  + ++M  RD 
Sbjct: 825  LKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAVRDL 884

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            VSW S+++ Y       +T+  F  M +   + P+     S++ ACG+LGA R G+  H+
Sbjct: 885  VSWTSMISGYAHNGYNSETLGFFDLMRS-SGVIPNRVSILSVLLACGNLGALRKGEWFHS 943

Query: 130  CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
              + + F  D +V ++++DMY+KCG  + AR +FD    K+ V W+AM+++Y   G  + 
Sbjct: 944  YVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRK 1003

Query: 190  AMEIFEQ 196
            A+++F+Q
Sbjct: 1004 AIDLFDQ 1010


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/547 (37%), Positives = 320/547 (58%), Gaps = 33/547 (6%)

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           M   D VSW S++    +    +  +S F  M + D ++ D +   S++ +  S+   + 
Sbjct: 1   MEFDDEVSWNSLILGCVREGFEEDALSFFQKMRSRD-MKIDEYTLPSVLNSFASMKVMQN 59

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
              VH   + + F    +V ++L+DMY                               A+
Sbjct: 60  AISVHCLIIKTGFEAYKLVNNALIDMY-------------------------------AK 88

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            G+   A+ +F +   +++  WT+LV+G   + +  +A   F +MR  GV   D + ++S
Sbjct: 89  QGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGV-YPDQIAVAS 147

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++ ACA   V++ G+QIH  ++  G ES L + N++V MYAKC  I+ A   F  M  +D
Sbjct: 148 VLSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRD 207

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           V+SWT++IVG AQ+G+ + +L  YD+M++ G KP+ +TF+GL++ACSH GL+G GR  F+
Sbjct: 208 VISWTALIVGYAQNGRGKHSLQFYDQMIATGTKPDYITFIGLLFACSHNGLLGSGRAYFE 267

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
           +M + YGI P  +HY C++DLL RSG L EA+ L+  M   PD   W ALL+AC+ H+  
Sbjct: 268 AMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAACRVHKEL 327

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           E+G   A +L  L+P +   Y++LSN+Y++A  W+  +++R+LM    + KEPGYS+IE 
Sbjct: 328 ELGEMAAKNLFELEPMNSMPYVMLSNMYSAAGKWEDAARIRRLMRSRGICKEPGYSWIET 387

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
                 F + + +HPL++EI+  + E+   +K  GYVPD S  LHD + + KE  L +HS
Sbjct: 388 NSKVSTFMSEDRNHPLRNEIYSKIDEIIMLIKEAGYVPDMSFALHDTDDEVKELGLAYHS 447

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           E+LAVA+GLL    G  +R+ KNLRVCGDCH  MK  S++  R I++RD+  +HHF +G+
Sbjct: 448 EKLAVAFGLLTVPQGAPIRIFKNLRVCGDCHTAMKYTSKVYARHIILRDSNCFHHFTEGR 507

Query: 604 CSCNDFW 610
           CSC D+W
Sbjct: 508 CSCGDYW 514



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/173 (34%), Positives = 95/173 (54%), Gaps = 1/173 (0%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           ++H  IIK G   Y  + N LID Y K   +  A  +  +M  +D VSW S++T Y+   
Sbjct: 62  SVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNG 121

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
             ++ I +F  M  +  + PD    AS++ AC  L     G+Q+HA  V S       V 
Sbjct: 122 SYEEAIKLFCKM-RISGVYPDQIAVASVLSACAELTVMDFGQQIHATLVKSGLESSLSVD 180

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           +SLV MYAKCG   +A   FD++  ++ +SWTA++  YA++GR K +++ ++Q
Sbjct: 181 NSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQ 233



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 96/199 (48%), Gaps = 14/199 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA   +    + +HA ++K GL     + N+L+  Y KC  +  A+   + MP RD 
Sbjct: 149 LSACAELTVMDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDV 208

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC---GSLGATR-LGK 125
           +SW +++  Y Q    + ++  +  M+A    +PD+  F  L+ AC   G LG+ R   +
Sbjct: 209 ISWTALIVGYAQNGRGKHSLQFYDQMIATGT-KPDYITFIGLLFACSHNGLLGSGRAYFE 267

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARS 184
            +   + + P  +     + ++D+  + G    A+ + + + +  ++V W A+L+A    
Sbjct: 268 AMDKVYGIKPGPEH---YACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALLAA---- 320

Query: 185 GRKKDAMEIFEQAPVRNLF 203
            R    +E+ E A  +NLF
Sbjct: 321 CRVHKELELGEMA-AKNLF 338


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/640 (35%), Positives = 348/640 (54%), Gaps = 44/640 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C    +A   + LHA  +  GL +   + ++L+ +Y +      A  + + MP+++ 
Sbjct: 27  LKSCPAQPLA---RALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSVFDRMPEKNV 83

Query: 70  VSWASILTAYNQANLPQKTISIFSTML-----------------------ALDKLQ---- 102
           V W++++  Y+     +    +   M                        ALD +     
Sbjct: 84  VGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRALDAVTALVR 143

Query: 103 -------PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD-DDVVKSSLVDMYAKCG 154
                  PD    +  + A G +    +GKQVH  +V+   C  D  V ++L+DMY KCG
Sbjct: 144 MHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHG-YVVKAGCRLDACVVTALIDMYGKCG 202

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR----NLFLWTALVS 210
             +    VF      +  S  A+++  +R+ +  +A+ +F +   R    N+  WT++V+
Sbjct: 203 RADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELNVVSWTSIVA 262

Query: 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE 270
             VQ+  +++A   F  M+  GV+  + + +  ++ A AN A L  G+  H   +  G+ 
Sbjct: 263 CCVQNGRDLEAVDLFRTMQSIGVE-PNSVTIPCVLPAFANVAALMHGRSAHCFSLRKGFL 321

Query: 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEM 330
             +++ +A+VDMYAKC     A+ IF  M  ++VVSW ++I G A HG A   + L+  M
Sbjct: 322 HDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGDAANAVQLFCSM 381

Query: 331 VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH 390
                KP+ VTF  ++ ACS  GL  +GR+ F  M + +GI+P ++HY C++ LL RSG 
Sbjct: 382 QKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYACMVTLLGRSGK 441

Query: 391 LDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNV 450
           LDEA +LI  MPFEPD   W +LL +C+ + N  +    A  L  L+P +  +Y+LLSN+
Sbjct: 442 LDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPGNAGNYVLLSNI 501

Query: 451 YASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTEL 510
           YAS  MW  V++VR  M  M +KKE G S+IE     H+  AG+ SHP+   I E L +L
Sbjct: 502 YASKKMWDGVNRVRDEMKNMGLKKEKGCSWIEIKNKVHMLLAGDNSHPMMTAITEKLNQL 561

Query: 511 DAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVC 570
             EM R G+ P    VLHD+E++EK+  L  HSE+LAVA GL+ + PGT LRV+KNLR+C
Sbjct: 562 TIEMNRLGFAPSRDFVLHDVEEQEKDNILAVHSEKLAVALGLISTRPGTPLRVIKNLRIC 621

Query: 571 GDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           GDCH  MK IS   +REI VRD  R+HHFKDGKCSC D+W
Sbjct: 622 GDCHEAMKFISSFEQREISVRDTNRFHHFKDGKCSCGDYW 661



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 141/284 (49%), Gaps = 9/284 (3%)

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162
           PD  +  S +K+C    A  L + +HA  V+S   +D  V SSL+  Y + G    AR+V
Sbjct: 18  PDPHLLPSALKSCP---AQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGAARSV 74

Query: 163 FDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ---APVR-NLFLWTALVSGLVQSRNE 218
           FD +  KN V W+A+++ Y+  G  + A  + EQ   A V  N+  W  LVSGL +S   
Sbjct: 75  FDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNRSGRA 134

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
           +DA  + + M  EG    D   +S  + A  +   + +GKQ+HG V+  G      +  A
Sbjct: 135 LDAVTALVRMHSEGF-FPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACVVTA 193

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++DMY KC        +F      DV S  +++ G +++ Q  E L L+ E +  GV+ N
Sbjct: 194 LIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGVELN 253

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            V++  ++  C   G   +   LF++M +  G+ P+     C+L
Sbjct: 254 VVSWTSIVACCVQNGRDLEAVDLFRTM-QSIGVEPNSVTIPCVL 296


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/595 (36%), Positives = 334/595 (56%), Gaps = 43/595 (7%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H   +K+G      + N+L+D Y KC  +  A  +   +  R  +SW +++  +  A  
Sbjct: 129 IHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGY 188

Query: 85  PQKTISIFSTMLALD-KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF-CDDD-V 141
             K +  F  M   + K +PD F   SL+KAC S G    GKQ+H   V S F C     
Sbjct: 189 GSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSAT 248

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           +  SLVD+Y KCG   +AR  FD IK K  +SW++++  YA+ G   +AM +F++     
Sbjct: 249 ITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKR----- 303

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                     L +  ++ID+F                  LSSI+G  A+FA+L  GKQ+ 
Sbjct: 304 ----------LQELNSQIDSF-----------------ALSSIIGVFADFALLRQGKQMQ 336

Query: 262 GLVIAL--GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
            L + L  G E+ +   N++VDMY KC  +  A+  F  M+ KDV+SWT +I G  +HG 
Sbjct: 337 ALAVKLPSGLETSVL--NSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGL 394

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
            ++++ ++ EM+   ++P+EV ++ ++ ACSH G++ +G +LF  ++E +GI P ++HY 
Sbjct: 395 GKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYA 454

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++DLL R+G L EA++LI  MP +P+   W  LLS C+ H + E+G  V   LL +  +
Sbjct: 455 CVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAK 514

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           +P++Y+++SN+Y  A  W      R+L ++  +KKE G S++E  +  H F +GE SHPL
Sbjct: 515 NPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPL 574

Query: 500 KDEIFELLTELDAEMKRR-GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLK---S 555
              I E L E +  ++   GYV      LHD++ + KE  L  HSE+LA+   L     +
Sbjct: 575 TPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLN 634

Query: 556 VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             G  +RV KNLRVC DCH  +K +S+ITK   VVRDA R+H F+DG CSC D+W
Sbjct: 635 QKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDYW 689



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 150/311 (48%), Gaps = 38/311 (12%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS-LVDMYAKCGLPNNARAVFDSI 166
             S+++ C   G +  G QVH C++L      +++ S+ L+DMY KC  P  A  VFDS+
Sbjct: 9   LVSILRVCTRKGLSDQGGQVH-CYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSM 67

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
             +N VSW+A++S +  +G  K ++ +F                                
Sbjct: 68  PERNVVSWSALMSGHVLNGDLKGSLSLFS------------------------------- 96

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           EM R+G+   +    S+ + AC     LE G QIHG  + +G+E  + + N++VDMY+KC
Sbjct: 97  EMGRQGI-YPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKC 155

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK--PNEVTFVG 344
             I  A+ +F R+  + ++SW ++I G    G   + L  +  M  A +K  P+E T   
Sbjct: 156 GRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTS 215

Query: 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT-CLLDLLSRSGHLDEAENLIKAMPF 403
           L+ ACS  G++  G+++   ++      PS    T  L+DL  + G+L  A      +  
Sbjct: 216 LLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIK- 274

Query: 404 EPDEPTWAALL 414
           E    +W++L+
Sbjct: 275 EKTMISWSSLI 285



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 143/322 (44%), Gaps = 49/322 (15%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLH--QYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR 67
           L+ C+   +    K +H  +++ G H      +  +L+D Y KC  +  A    +++ ++
Sbjct: 217 LKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEK 276

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
             +SW+S++  Y Q     + + +F  +  L+  Q D F  +S++         R GKQ+
Sbjct: 277 TMISWSSLILGYAQEGEFVEAMGLFKRLQELNS-QIDSFALSSIIGVFADFALLRQGKQM 335

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
            A  V  P   +  V +S+VDMY KCGL + A   F  ++LK+ +SWT +++ Y + G  
Sbjct: 336 QALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLG 395

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
           K ++ I                               F EM R  ++  D +   +++ A
Sbjct: 396 KKSVRI-------------------------------FYEMLRHNIE-PDEVCYLAVLSA 423

Query: 248 CANFAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           C++  +++ G+++       HG+   + + +C      +VD+  +   +  AK +   M 
Sbjct: 424 CSHSGMIKEGEELFSKLLETHGIKPRVEHYAC------VVDLLGRAGRLKEAKHLIDTMP 477

Query: 301 RK-DVVSWTSIIVGTAQHGQAE 321
            K +V  W +++     HG  E
Sbjct: 478 IKPNVGIWQTLLSLCRVHGDIE 499



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 95/179 (53%), Gaps = 2/179 (1%)

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           L SI+  C    + + G Q+H  ++  G    L  SN ++DMY KC + + A  +F  M 
Sbjct: 9   LVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMP 68

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            ++VVSW++++ G   +G  + +L+L+ EM   G+ PNE TF   + AC  +  + KG +
Sbjct: 69  ERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQ 128

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           +    ++  G    ++    L+D+ S+ G ++EAE + + +  +    +W A+++   H
Sbjct: 129 IHGFCLK-IGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRI-VDRSLISWNAMIAGFVH 185


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/601 (36%), Positives = 331/601 (55%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA        + +H  +IK        +   L+D Y K   +  A  + + M  RD 
Sbjct: 217 LKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDL 276

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           + W ++++  +      +  SIF   L  + L  +    A+++K+  SL A    +QVHA
Sbjct: 277 ILWNALISGCSHGGRHDEAFSIFYG-LRKEGLGVNRTTLAAVLKSTASLEAASATRQVHA 335

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 F  D  V + L+D Y KC                      + LS         D
Sbjct: 336 LAEKIGFIFDAHVVNGLIDSYWKC----------------------SCLS---------D 364

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +FE+    ++   T++++ L Q  +   A   F+EM R+G++  DP VLSS++ ACA
Sbjct: 365 AIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLE-PDPFVLSSLLNACA 423

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           + +  E GKQ+H  +I   + S  F  NA+V  YAKC  I  A+  F  +  + VVSW++
Sbjct: 424 SLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSA 483

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G AQHG  +  L L+  MV  G+ PN +T   ++ AC+H GLV + ++ F SM E +
Sbjct: 484 MIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMF 543

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI  + +HY+C++DLL R+G LD+A  L+ +MPF+ +   W ALL A + H++ E+G   
Sbjct: 544 GIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLA 603

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  L  L+PE   +++LL+N YAS+ MW  V+KVRKLM    +KKEP  S++E     H 
Sbjct: 604 AEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHT 663

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F  G+ SHP+  EI+  L EL   M + GY+P+    LHD+++ EKE  L  HSERLAVA
Sbjct: 664 FIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVA 723

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + LL + PG  +RV KNLR+C DCH+  K IS I  REI++RD  R+HHF+DG CSC D+
Sbjct: 724 FALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDY 783

Query: 610 W 610
           W
Sbjct: 784 W 784



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 187/398 (46%), Gaps = 35/398 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA ++++G  +     N L+D Y K   V  A  + E+MP  D VSW ++++     
Sbjct: 129 RQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLN 188

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + I +   M +   L P+ F+ +S++KAC   GA  LG+Q+H   + +    DD +
Sbjct: 189 GHDHRAIELLLQMKS-SGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYI 247

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
              LVDMYAK    ++A  VFD +  ++ + W A++S  +  GR  +A  I         
Sbjct: 248 GVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSI--------- 298

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                 F  +R+EG+  V+   L++++ + A+       +Q+H 
Sbjct: 299 ----------------------FYGLRKEGLG-VNRTTLAAVLKSTASLEAASATRQVHA 335

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L   +G+     + N ++D Y KCS +  A  +F      D+++ TS+I   +Q    E 
Sbjct: 336 LAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEG 395

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L+ EM+  G++P+      L+ AC+ +    +G+++   +I+   ++ +      L+
Sbjct: 396 AIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALV 454

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
              ++ G +++AE    ++P E    +W+A++     H
Sbjct: 455 YTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQH 491



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/445 (24%), Positives = 190/445 (42%), Gaps = 69/445 (15%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM-PQRDHVSWASILTAYNQAN 83
           +HA  +  G      + N L+  YG    +  A  + +E   +R+ VSW  +++AY + +
Sbjct: 29  VHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKND 88

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
                I +F  M+    +QP  F F+ +V AC        G+QVHA  V   +  D    
Sbjct: 89  QCGDAIQVFGEMV-WSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTA 147

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           ++LVDMY K G  + A  +F+ +   + VSW A++S    +G    A+E+          
Sbjct: 148 NALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIEL---------- 197

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
                                 ++M+  G+ + +  +LSSI+ ACA     +LG+QIHG 
Sbjct: 198 ---------------------LLQMKSSGL-VPNVFMLSSILKACAGAGAFDLGRQIHGF 235

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           +I    +S  +I   +VDMYAK   +  A  +F  M  +D++ W ++I G +  G+ +E 
Sbjct: 236 MIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEA 295

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK----------LFKSMIEDYGITP 373
            +++  +   G+  N  T   ++ + + +      R+          +F + + + G+  
Sbjct: 296 FSIFYGLRKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVN-GLID 354

Query: 374 SLQHYTCLLD------------------LLSRSGHLDEAENLIKAM------PFEPDEPT 409
           S    +CL D                  +++     D  E  IK          EPD   
Sbjct: 355 SYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFV 414

Query: 410 WAALLSACKHHRNTEMGTRVANHLL 434
            ++LL+AC      E G +V  HL+
Sbjct: 415 LSSLLNACASLSAYEQGKQVHAHLI 439



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 139/306 (45%), Gaps = 47/306 (15%)

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
            +LG QVHA  + + F  D  V ++LV MY   G  ++AR VFD                
Sbjct: 23  AQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFD---------------- 66

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
                         E    RN   W  L+S  V++    DA   F EM   G+   +   
Sbjct: 67  --------------EAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTE-FG 111

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
            S +V AC     ++ G+Q+H +V+ +GYE  +F +NA+VDMY K   +  A  IF +M 
Sbjct: 112 FSCVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP 171

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
             DVVSW ++I G   +G     + L  +M S+G+ PN      ++ AC+  G    GR+
Sbjct: 172 DSDVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQ 231

Query: 361 LFKSMI------EDY-GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
           +   MI      +DY G+         L+D+ +++  LD+A  +   M    D   W AL
Sbjct: 232 IHGFMIKANADSDDYIGVG--------LVDMYAKNHFLDDAMKVFDWMSHR-DLILWNAL 282

Query: 414 LSACKH 419
           +S C H
Sbjct: 283 ISGCSH 288



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 117/238 (49%), Gaps = 26/238 (10%)

Query: 228 MRREGV---DIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284
           MR EGV   +   P+VL  +  A       +LG Q+H + +A G+ S +F++NA+V MY 
Sbjct: 1   MRAEGVCCNEFALPVVLKCVPDA-------QLGAQVHAMAMATGFGSDVFVANALVAMYG 53

Query: 285 KCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
               +  A+ +F      ++ VSW  ++    ++ Q  + + ++ EMV +G++P E  F 
Sbjct: 54  GFGFMDDARRVFDEAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFS 113

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            ++ AC+    +  GR++  +M+   G    +     L+D+  + G +D A  + + MP 
Sbjct: 114 CVVNACTGSRNIDAGRQV-HAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP- 171

Query: 404 EPDEPTWAALLSAC----KHHRNTEMGTRVANHLLSLKPED--PSSYILLSNVYASAA 455
           + D  +W AL+S C      HR  E+       LL +K     P+ ++L S + A A 
Sbjct: 172 DSDVVSWNALISGCVLNGHDHRAIEL-------LLQMKSSGLVPNVFMLSSILKACAG 222


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  416 bits (1070), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/598 (37%), Positives = 334/598 (55%), Gaps = 36/598 (6%)

Query: 14  ARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWA 73
           AR +  +    LH  I+K GL     + N LI+ Y K  L   +    E+ PQ+   +W+
Sbjct: 26  ARSRSIVKGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSATTWS 85

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           SI++ + Q  LP  ++     M+A   L+PD  V  S  K+CG L    +GK VH C  +
Sbjct: 86  SIISCFAQNELPWMSLEFLRKMMA-GSLRPDDHVLPSATKSCGILSRCDIGKSVH-CLSM 143

Query: 134 SPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
               D DV V SSLVDMYAKCG                          YAR        +
Sbjct: 144 KTGYDADVFVGSSLVDMYAKCGEI-----------------------VYAR--------K 172

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F++ P+RN+  W+ ++ G  Q     +A + F E   E + + D    S+++  CAN  
Sbjct: 173 MFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVND-YSFSTVISVCANST 231

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
           +LELG+QI GL I   ++S  F+ +++V +Y+KC D+  A  +F  +  +++  W +++ 
Sbjct: 232 LLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNAMLK 291

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
             AQH   ++ + L+  M  +G+KPN +TF+ ++ ACSH GLV +G+  F  M E   I 
Sbjct: 292 ACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGKYYFDLMKESR-IE 350

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
           P+ +HY  L+D+L R+G L+EA  ++  MP +P E  W ALL++C  H+NTE+    A+ 
Sbjct: 351 PTDKHYASLVDMLGRAGKLEEALEIVTNMPIDPTESVWGALLTSCTIHKNTELAAFAADK 410

Query: 433 LLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYA 492
           +  L P     +I LSN YA+   ++  +K RKL+     KKE G S++E     H F A
Sbjct: 411 VFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAA 470

Query: 493 GETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGL 552
           GE  H    EI+E L EL  EM++ GYV DTS VL +++  EK + + +HSERLA+A+GL
Sbjct: 471 GERRHERSKEIYEKLAELGEEMEKAGYVADTSYVLREVDGDEKNQTIRYHSERLAIAFGL 530

Query: 553 LKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +       +RV+KNLRVCGDCH  +K +S  T+R I+VRD  R+H F+DGKCSCND+W
Sbjct: 531 ITFPADRPIRVMKNLRVCGDCHNAIKFMSICTRRVIIVRDNNRFHRFEDGKCSCNDYW 588



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/195 (24%), Positives = 86/195 (44%), Gaps = 6/195 (3%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           + VCA   +    + +    IK        + ++L+  Y KC  ++ A+ + +E+P R+ 
Sbjct: 224 ISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNL 283

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
             W ++L A  Q +  QK I +F  M  L  ++P+   F +++ AC   G    GK    
Sbjct: 284 GIWNAMLKACAQHSHTQKVIELFKRM-KLSGMKPNFITFLNVLNACSHAGLVDEGKYYFD 342

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGRKK 188
               S     D   +SLVDM  + G    A  +  ++ +  + S W A+L++       +
Sbjct: 343 LMKESRIEPTDKHYASLVDMLGRAGKLEEALEIVTNMPIDPTESVWGALLTSCTIHKNTE 402

Query: 189 ----DAMEIFEQAPV 199
                A ++FE  PV
Sbjct: 403 LAAFAADKVFELGPV 417


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/606 (35%), Positives = 344/606 (56%), Gaps = 7/606 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE--EMPQR 67
           ++  A  +  L  K +H   IK        + N+LI  Y  C  +  A+ + E  E   +
Sbjct: 247 IKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIEGNNK 306

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           D VSW S++T + Q   P K + +F  M   + + P+     S++ AC       LG++V
Sbjct: 307 DIVSWNSMVTGFVQGGYPDKALDLFERMRN-EGVHPNAVTMVSVMSACAKTMNLTLGRKV 365

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
                 +    +  V ++ +DM+ KCG    AR +FD+++ ++ VSWT ++  YA+    
Sbjct: 366 CDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKMSEH 425

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR--REGVDIVDPLVLSSIV 245
             A +IF+  P +++  W  L+SG  QS    +A   F E++  + G    D + L S +
Sbjct: 426 GIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGAR-PDQVTLLSTL 484

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            ACA    +++G+ IHG +     +    ++ +++DMY+K  D+  A ++F  +  KDV 
Sbjct: 485 SACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIGNKDVF 544

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
            W+++I G A HG+ E  + L+ +M    VKPN VTF  L+ ACSH GLV +G++LF  M
Sbjct: 545 VWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGLVDEGKRLFDEM 604

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
              YG+ P  +HY+C++D+L R+GHL+EA   I+ MP  P    W ALL AC  H N E+
Sbjct: 605 ERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALLGACCIHGNLEL 664

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
             +  + LL ++P +  +Y+LLSN+YA    W+ VS++R+ M    +KKE G S IE   
Sbjct: 665 AEKACSRLLEIEPGNHGAYVLLSNLYAKTGDWEGVSELRQQMRDSGLKKETGCSSIEIDG 724

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE-KERQLFWHSE 544
             H F  G+ +HPL  +I+  L E+ A ++  GYV +T  +L  +E++E KE+ L  HSE
Sbjct: 725 TVHEFIVGDNAHPLSRDIYAKLDEIMARLRSHGYVANTLCMLQFVEEEEMKEKALKLHSE 784

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           ++A+A+GL+++     +R+VKNLRVC DCH V KM+S++  R+IV+RD  R+HHF  G C
Sbjct: 785 KMAIAFGLIRADSQQAIRIVKNLRVCRDCHTVAKMVSKVYGRDIVLRDRYRFHHFSGGHC 844

Query: 605 SCNDFW 610
           SC D+W
Sbjct: 845 SCQDYW 850



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/440 (25%), Positives = 200/440 (45%), Gaps = 71/440 (16%)

Query: 22  VKTLHAQIIKLG-LHQ-YGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           +K +HAQ+++   LH  Y         A+     + YA  + +++PQ +  SW  ++ A 
Sbjct: 155 LKQIHAQMLRTNKLHDPYAASELFTAAAFSSFSALDYARKVFDQIPQPNLYSWNILIRAL 214

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
             ++ P +++ +F  ML      P+ F F  L+KA        +GK VH   + + F DD
Sbjct: 215 ATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDD 274

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS--VSWTAMLSAYARSGRKKDAMEIFEQA 197
             V +SL+  YA CG  + A  VF+ I+  N   VSW +M++ + + G    A+++FE+ 
Sbjct: 275 VFVLNSLIHFYASCGHLDLAYLVFEMIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFER- 333

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
                                         MR EGV   + + + S++ ACA    L LG
Sbjct: 334 ------------------------------MRNEGVH-PNAVTMVSVMSACAKTMNLTLG 362

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA-- 315
           +++   +        L + NA +DM+ KC ++  A+ +F  M ++DVVSWT+II G A  
Sbjct: 363 RKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDGYAKM 422

Query: 316 -----------------------------QHGQAEETLALYDE--MVSAGVKPNEVTFVG 344
                                        Q G+ +E LA++ E  +  +G +P++VT + 
Sbjct: 423 SEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQVTLLS 482

Query: 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE 404
            + AC+ +G +  G +     I+   I  +    T L+D+ S+SG +++A  +  ++   
Sbjct: 483 TLSACAQLGAMDIG-EWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIEVFHSIG-N 540

Query: 405 PDEPTWAALLSACKHHRNTE 424
            D   W+A+++    H   E
Sbjct: 541 KDVFVWSAMIAGLAMHGRGE 560


>gi|449485565|ref|XP_004157209.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 953

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/575 (37%), Positives = 335/575 (58%), Gaps = 9/575 (1%)

Query: 35  HQYGPLP-------NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQK 87
           H Y  +P       N++I  +G   LV  A  L +EM ++D V+W++++  + Q  + ++
Sbjct: 300 HIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEE 359

Query: 88  TISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLV 147
            I  F  M  +  +  D  V  S + AC +L    +GK +H+  +         ++++L+
Sbjct: 360 AIRTFVGMHKIG-VMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALI 418

Query: 148 DMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTA 207
            MY+KCG    AR +FD   L + +SW +M+S Y +     +A  IF+  P +++  W++
Sbjct: 419 YMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSS 478

Query: 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267
           ++SG  Q+    +    F EM+  G    D   L S++ ACA  A LE GK +H  +   
Sbjct: 479 MISGYAQNDLFDETLALFQEMQMSGFK-PDETTLVSVISACARLAALEQGKWVHAYIKRN 537

Query: 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327
           G    + +   ++DMY KC  +  A ++F  M  K + +W ++I+G A +G  E +L ++
Sbjct: 538 GLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMF 597

Query: 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
             M    V PNE+TF+G++ AC H+GLV +G+  F SMI D+ I P+++HY C++DLL R
Sbjct: 598 SNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGR 657

Query: 388 SGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447
           +G L EAE L+  MP  PD  TW ALL ACK H ++EMG RV   L+ L+P+    ++LL
Sbjct: 658 AGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLL 717

Query: 448 SNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELL 507
           SN+YAS   W  V ++R +M+   V K PG S IE     H F AG+ +HP  D I ++L
Sbjct: 718 SNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDML 777

Query: 508 TELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNL 567
            E+  ++K  GY PD + VL D++++EKE  LF HSE+LA+A+GL+   P T +R++KNL
Sbjct: 778 VEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNL 837

Query: 568 RVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           R+C DCH   K+IS+   R+IVVRD  R+HHF+ G
Sbjct: 838 RICNDCHTAAKLISKAFCRKIVVRDRHRFHHFEQG 872



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 118/399 (29%), Positives = 195/399 (48%), Gaps = 66/399 (16%)

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
           AY Q N P    +++ +ML+ + L  D++ +  L++AC    +    KQVH   +   F 
Sbjct: 187 AYIQTNSPHFAFTLYKSMLS-NYLGADNYTYPLLIQACSIRRSEWEAKQVHNHVLKLGFD 245

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D  V+++L++ ++ C    +A  VF+   + +SVSW ++L+ Y   G  ++A  I+ Q 
Sbjct: 246 SDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIEIGNVEEAKHIYHQM 305

Query: 198 PVR-------------------------------NLFLWTALVSGLVQSRNEIDAFYSFI 226
           P R                               ++  W+AL++   Q+    +A  +F+
Sbjct: 306 PERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEEAIRTFV 365

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            M + GV +VD +V  S + ACAN  V+ +GK IH L + +G ES + + NA++ MY+KC
Sbjct: 366 GMHKIGV-MVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKC 424

Query: 287 SDIIA-------------------------------AKDIFGRMRRKDVVSWTSIIVGTA 315
            DI+                                AK IF  M  KDVVSW+S+I G A
Sbjct: 425 GDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYA 484

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
           Q+   +ETLAL+ EM  +G KP+E T V +I AC+ +  + +G K   + I+  G+T ++
Sbjct: 485 QNDLFDETLALFQEMQMSGFKPDETTLVSVISACARLAALEQG-KWVHAYIKRNGLTINV 543

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
              T L+D+  + G ++ A  +   M  E    TW AL+
Sbjct: 544 ILGTTLIDMYMKCGCVETALEVFYGM-IEKGISTWNALI 581



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 145/345 (42%), Gaps = 66/345 (19%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYG-------------------- 49
           L  CA   +    K +H+  +K+G   Y  L N LI  Y                     
Sbjct: 383 LSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDL 442

Query: 50  -----------KCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                      KC+LV  A  + + MP++D VSW+S+++ Y Q +L  +T+++F  M  +
Sbjct: 443 ISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEM-QM 501

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
              +PD     S++ AC  L A   GK VHA    +    + ++ ++L+DMY KCG    
Sbjct: 502 SGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVET 561

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A  VF  +  K   +W A++   A +G  + ++++F      ++            + NE
Sbjct: 562 ALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHV------------TPNE 609

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK-QIHGLVIALGYESCLFISN 277
           I                        ++GAC +  +++ G+   + ++     +  +    
Sbjct: 610 I--------------------TFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYG 649

Query: 278 AIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAE 321
            +VD+  +   +  A+++  RM    DV +W +++    +HG +E
Sbjct: 650 CMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSE 694



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 15/196 (7%)

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
            KQ+H  V+ LG++S +++ N +++ ++ CS++  A  +F      D VSW SI+ G  +
Sbjct: 232 AKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILAGYIE 291

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
            G  EE   +Y +M    +    +    +I      GLV +  KLF  M+E   +T    
Sbjct: 292 IGNVEEAKHIYHQMPERSI----IASNSMIVLFGMRGLVVEACKLFDEMLEKDMVT---- 343

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
            ++ L+    ++   +EA      M       DE    + LSAC +     MG  +  H 
Sbjct: 344 -WSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLI--HS 400

Query: 434 LSLKPEDPSSYILLSN 449
           LSLK     SYI L N
Sbjct: 401 LSLKI-GTESYINLQN 415


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 218/606 (35%), Positives = 349/606 (57%), Gaps = 18/606 (2%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           H++  L+ C  +     +  ++A+II+   HQ   +   L+      + + YA  +    
Sbjct: 34  HFISLLQNCKHNN---QIPPIYAKIIRNHHHQDPFVVFELLRVCSNLNSIGYASKIFSHT 90

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
              +   + +++     +      I ++  M+    L PD +   S++KACG   A + G
Sbjct: 91  QNPNVYLYTALIDGLVLSCYYTDGIHLYYQMIN-SSLVPDSYAVTSVLKACGCHLALKEG 149

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           ++VH+  +      +  ++  L+++Y KCG   +AR VFD +  ++ V+ T M++ Y   
Sbjct: 150 REVHSQVLKLGLSSNRSIRIKLIELYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDH 209

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G             +++   WTA++ GLV++     A   F  M+RE V + + + +  +
Sbjct: 210 G-------------IKDTVCWTAMIDGLVRNGESNRALEVFRNMQREDV-MPNEVTIVCV 255

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + AC+    L+LG+ +   +     E   F+  A+++MY++C DI  A+ +F +M+ K+V
Sbjct: 256 LSACSELGALQLGRWVRSYMDKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNV 315

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           +++ S+I+G A HG++ E + L+  ++  G  P+ VTFVG++ ACSH GL   G ++F S
Sbjct: 316 ITYNSMIMGFALHGKSVEAVELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHS 375

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           M +DYGI P ++HY C++DLL R G L+EA + I+ M   PD     ALLSACK H N E
Sbjct: 376 MAKDYGIEPQIEHYGCMVDLLGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLE 435

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +  RVA  L++ K  D  +YILLSN Y+S+  W+  ++VR  M    ++KEPG S IE  
Sbjct: 436 LAERVAKSLVACKNADSGTYILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSIEVN 495

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
              H F  G+  HP K++I++ L EL+  ++  GY P T  VLHD+E+ EKE  L  HSE
Sbjct: 496 NEIHEFLLGDLRHPQKEKIYKKLEELNQILRLEGYTPATEVVLHDIEKSEKEWALAIHSE 555

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           RLA+ YGL+ + P T LRVVKNLRVC DCH+ +K+IS IT+R+IVVRD  R+HHF++G C
Sbjct: 556 RLAICYGLISTKPLTTLRVVKNLRVCNDCHLTIKLISNITRRKIVVRDRNRFHHFENGVC 615

Query: 605 SCNDFW 610
           SC D+W
Sbjct: 616 SCGDYW 621


>gi|12039323|gb|AAG46111.1|AC073166_9 hypothetical protein [Oryza sativa Japonica Group]
          Length = 787

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/569 (37%), Positives = 328/569 (57%), Gaps = 34/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           ++L+  Y +   +  A  +   MP+RD V+W++++  +  A  P   I ++  M   D +
Sbjct: 147 SSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE-DGV 205

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           + D  V   +++AC +    R+G  VH   +      D V  +SLVDMYAK GL + A  
Sbjct: 206 KGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACR 265

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF  +  +N VS                               W+A++SG  Q+    +A
Sbjct: 266 VFGLMVHRNDVS-------------------------------WSAMISGFAQNGQSDEA 294

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M+  G+   D   L S + AC+N   L+LG+ +HG ++     +C+ +  A +D
Sbjct: 295 LRLFRNMQASGIQ-PDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCI-LGTAAID 352

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY+KC  + +A+ +F  +  +D++ W ++I     HG+ ++ L L+ EM   G++P+  T
Sbjct: 353 MYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHAT 412

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F  L+ A SH GLV +G+  F  M+  + ITP+ +HY CL+DLL+RSG ++EA +L+ +M
Sbjct: 413 FASLLSALSHSGLVEEGKLWFGRMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSM 472

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
             EP    W ALLS C +++  E+G  +A+++L L+P+D     L+SN+YA+   W  V 
Sbjct: 473 KAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVR 532

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           +VRKLM     KK PG S IE     H+F   + SHP ++EI   + +LD EM++ GY+P
Sbjct: 533 QVRKLMKDSGSKKMPGCSSIEIRGTRHVFVMEDQSHPQREEIVSKVAKLDLEMRKMGYIP 592

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
            T  V HD+E++ KE+QL +HSERLA+A+GLL + PGT L ++KNLRVCGDCH  +K IS
Sbjct: 593 RTEFVYHDLEEEVKEQQLSYHSERLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYIS 652

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I  REIVVRDA R+HHFKDG CSC D+W
Sbjct: 653 KIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 164/342 (47%), Gaps = 37/342 (10%)

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
           +++   P   + +F  +      +PD   F   + AC  LG  R G+ V      + + D
Sbjct: 84  HSRRGSPASALRVFRALPP--AARPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKD 141

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  V SSL+ +YA+ G   +A  VF  +  ++ V+W+ M++ +  +G+  DA++++ +  
Sbjct: 142 DVFVCSSLLHLYARWGAMGDAVKVFVRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRR-- 199

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
                                        MR +GV   D +V+  ++ AC     + +G 
Sbjct: 200 -----------------------------MREDGVK-GDEVVMIGVIQACTAARNVRMGA 229

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
            +HG ++  G    +  + ++VDMYAK   +  A  +FG M  ++ VSW+++I G AQ+G
Sbjct: 230 SVHGHLLRHGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNG 289

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
           Q++E L L+  M ++G++P+    V  + ACS++G +  GR +   ++  +     L   
Sbjct: 290 QSDEALRLFRNMQASGIQPDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILG-- 347

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           T  +D+ S+ G L  A+ L   M  + D   W A+++ C  H
Sbjct: 348 TAAIDMYSKCGSLASAQMLFN-MISDRDLILWNAMIACCGAH 388



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 108/216 (50%), Gaps = 3/216 (1%)

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           D    +  + ACA    L  G+ +       GY+  +F+ ++++ +YA+   +  A  +F
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVF 166

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
            RM R+D V+W++++ G    GQ  + + +Y  M   GVK +EV  +G+I AC+    V 
Sbjct: 167 VRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVR 226

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G  +   ++  +G+   +   T L+D+ +++G LD A  +   M    D  +W+A++S 
Sbjct: 227 MGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRNDV-SWSAMISG 284

Query: 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
              +  ++   R+  ++ +   + P S  L+S + A
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQ-PDSGALVSALLA 319


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/589 (35%), Positives = 335/589 (56%), Gaps = 34/589 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  ++K        + N L+D Y K D V     L  EMP+ D +S+  ++T+Y   
Sbjct: 261 QQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWN 320

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +++  +F   L   +     F FA+L+    S    R+G+Q+H   +      +  V
Sbjct: 321 GQFKESFDLFRK-LQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRV 379

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           +++LVDMYAKC                                  K+A +IF+    ++ 
Sbjct: 380 ENALVDMYAKCN-------------------------------GDKEAQKIFDNIACKST 408

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WTA++S  VQ     +    F +MRR GV   D    +SI+ ACAN A + LG+Q+H 
Sbjct: 409 VPWTAMISAYVQKGKHEEGINVFSDMRRTGVP-ADQATFASILRACANLASISLGRQLHS 467

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L+I  G+ S ++  +A++D YAKC  +  A   FG M  ++ VSW ++I   AQ+G  + 
Sbjct: 468 LLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDG 527

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
           TL  + +M+ +G KP+ V+F+ ++ ACSH G V +    F SM + Y +TP  +HYT ++
Sbjct: 528 TLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMV 587

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP-EDP 441
           D+L R+G  DEAE L+  MPFEP E  W+++L++C+ H+N E+  + A+ L +++   D 
Sbjct: 588 DVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDA 647

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
           + YI +SN+YA A  W +V+KV+K M    V+K P YS++E    +H+F A + SHP   
Sbjct: 648 APYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMK 707

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           +I   +  L  EM+++GY PDT+  LHD+++  K   L +HSER A+A+ L+ +  G+ +
Sbjct: 708 KILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPI 767

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            V+KNLR C DCH  +K+IS+I +REI+VRD++R+HHFKDG CSC D+W
Sbjct: 768 VVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 121/248 (48%), Gaps = 10/248 (4%)

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A  VFD +  KN++S   M+S + + G+   A E+F+    R    WT L+ G +QS   
Sbjct: 62  AHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQS 121

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            +AF  + +MRR G++  D + L +++          +  QIH  VI LGYE  L + N+
Sbjct: 122 KEAFRLYADMRRGGIE-PDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNS 180

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           +VD Y K   +  A  +F  M  KD V++ S++ G +  G  EE + L+ E+ ++G+KP+
Sbjct: 181 LVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPS 240

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY----TCLLDLLSRSGHLDEA 394
           + TF  L+ A      VG     F   +  + +  +          LLD  S+   +DE 
Sbjct: 241 DFTFAALLSAA-----VGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEV 295

Query: 395 ENLIKAMP 402
             L   MP
Sbjct: 296 GKLFXEMP 303



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/429 (20%), Positives = 183/429 (42%), Gaps = 37/429 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +I  + K   +  A  L + M +R  VSW  ++  Y Q+N  ++   +++ M     +
Sbjct: 78  NMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRR-GGI 136

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PD+    +L+   G L    +  Q+H   +   +  + +V +SLVD Y K      A  
Sbjct: 137 EPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQ 196

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F  +  K++V++ ++++ Y+  G  ++A+E+F                           
Sbjct: 197 LFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELF--------------------------- 229

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
               +E+   G+   D    ++++ A       + G+Q+HG V+   +   +F+ NA++D
Sbjct: 230 ----LELHNSGIKPSD-FTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLD 284

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
            Y+K   +     +F  M   D +S+  +I   A +GQ +E+  L+ ++        +  
Sbjct: 285 YYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFP 344

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F  L+   +    +  GR++    I   G     +    L+D+ ++     EA+ +   +
Sbjct: 345 FATLLSIATSSLNLRMGRQIHCQAIT-VGANFESRVENALVDMYAKCNGDKEAQKIFDNI 403

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
             +   P W A++SA       E G  V + +   +   P+     +++  + A    +S
Sbjct: 404 ACKSTVP-WTAMISAYVQKGKHEEGINVFSDM--RRTGVPADQATFASILRACANLASIS 460

Query: 462 KVRKLMSVM 470
             R+L S++
Sbjct: 461 LGRQLHSLL 469



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR CA        + LH+ +I+ G        + L+D Y KC  +  A     EMP+R+ 
Sbjct: 450 LRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNS 509

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
           VSW ++++AY Q      T++ F  M+     +PD   F S++ AC   G
Sbjct: 510 VSWNALISAYAQNGNVDGTLNSFQQMIQ-SGYKPDSVSFLSVLSACSHCG 558


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/601 (36%), Positives = 331/601 (55%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA        + +H  +IK        +   L+D Y K   +  A  + + M  RD 
Sbjct: 310 LKACAGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDL 369

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           + W ++++  +      +  SIF   L  + L  +    A+++K+  SL A    +QVHA
Sbjct: 370 ILWNALISGCSHGGRHDEAFSIFYG-LRKEGLGVNRTTLAAVLKSTASLEAASATRQVHA 428

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 F  D  V + L+D Y KC                      + LS         D
Sbjct: 429 LAEKIGFIFDAHVVNGLIDSYWKC----------------------SCLS---------D 457

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +FE+    ++   T++++ L Q  +   A   F+EM R+G++  DP VLSS++ ACA
Sbjct: 458 AIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLE-PDPFVLSSLLNACA 516

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           + +  E GKQ+H  +I   + S  F  NA+V  YAKC  I  A+  F  +  + VVSW++
Sbjct: 517 SLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSA 576

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G AQHG  +  L L+  MV  G+ PN +T   ++ AC+H GLV + ++ F SM E +
Sbjct: 577 MIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMF 636

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI  + +HY+C++DLL R+G LD+A  L+ +MPF+ +   W ALL A + H++ E+G   
Sbjct: 637 GIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLA 696

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  L  L+PE   +++LL+N YAS+ MW  V+KVRKLM    +KKEP  S++E     H 
Sbjct: 697 AEKLFILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVKDKVHT 756

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F  G+ SHP+  EI+  L EL   M + GY+P+    LHD+++ EKE  L  HSERLAVA
Sbjct: 757 FIVGDKSHPMTKEIYSKLDELGDLMSKAGYIPNVDVDLHDLDRSEKELLLSHHSERLAVA 816

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + LL + PG  +RV KNLR+C DCH+  K IS I  REI++RD  R+HHF+DG CSC D+
Sbjct: 817 FALLSTPPGAPIRVKKNLRICRDCHMAFKFISNIVSREIIIRDINRFHHFRDGTCSCGDY 876

Query: 610 W 610
           W
Sbjct: 877 W 877



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 130/424 (30%), Positives = 193/424 (45%), Gaps = 56/424 (13%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
           IS  L R    A  Q  L    LHA ++K G      L N LI  Y KC     A  + +
Sbjct: 7   ISQQLTRY---AAAQALLPGAHLHANLLKSGF--LASLRNHLISFYSKCRRPCCARRVFD 61

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
           E+P   HVSW+S++TAY+   LP+  I  F  M A + +  + F    ++K    +   +
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRA-EGVCCNEFALPVVLKC---VPDAQ 117

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           LG QVHA  + + F  D  V ++LV MY   G  ++AR VFD                  
Sbjct: 118 LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFD------------------ 159

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
                       E    RN   W  L+S  V++    DA   F EM   G+   +    S
Sbjct: 160 ------------EAGSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTE-FGFS 206

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            +V AC     ++ G+Q+H +V+ +GYE  +F +NA+VDMY K   +  A  IF +M   
Sbjct: 207 CVVNACTGSRNIDAGRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDS 266

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           DVVSW ++I G   +G     + L  +M S+G+ PN      ++ AC+  G    GR++ 
Sbjct: 267 DVVSWNALISGCVLNGHDHRAIELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIH 326

Query: 363 KSMI------EDY-GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
             MI      +DY G+         L+D+ +++  LD+A  +   M    D   W AL+S
Sbjct: 327 GFMIKANADSDDYIGVG--------LVDMYAKNHFLDDAMKVFDWMSHR-DLILWNALIS 377

Query: 416 ACKH 419
            C H
Sbjct: 378 GCSH 381



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 187/398 (46%), Gaps = 35/398 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA ++++G  +     N L+D Y K   V  A  + E+MP  D VSW ++++     
Sbjct: 222 RQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLN 281

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + I +   M +   L P+ F+ +S++KAC   GA  LG+Q+H   + +    DD +
Sbjct: 282 GHDHRAIELLLQMKS-SGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDDYI 340

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
              LVDMYAK    ++A  VFD +  ++ + W A++S  +  GR  +A  I         
Sbjct: 341 GVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSI--------- 391

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                 F  +R+EG+  V+   L++++ + A+       +Q+H 
Sbjct: 392 ----------------------FYGLRKEGLG-VNRTTLAAVLKSTASLEAASATRQVHA 428

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L   +G+     + N ++D Y KCS +  A  +F      D+++ TS+I   +Q    E 
Sbjct: 429 LAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEG 488

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L+ EM+  G++P+      L+ AC+ +    +G+++   +I+   ++ +      L+
Sbjct: 489 AIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALV 547

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
              ++ G +++AE    ++P E    +W+A++     H
Sbjct: 548 YTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQH 584



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 158/342 (46%), Gaps = 59/342 (17%)

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G  +HA  + S F     +++ L+  Y+KC  P  AR VFD I     VSW+++++AY+ 
Sbjct: 23  GAHLHANLLKSGFLAS--LRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV---DIVDPLV 240
           +G  + A++ F                                 MR EGV   +   P+V
Sbjct: 81  NGLPRSAIQAFHG-------------------------------MRAEGVCCNEFALPVV 109

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM- 299
           L  +  A       +LG Q+H + +A G+ S +F++NA+V MY     +  A+ +F    
Sbjct: 110 LKCVPDA-------QLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAG 162

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
             ++ VSW  ++    ++ Q  + + ++ EMV +G++P E  F  ++ AC+    +  GR
Sbjct: 163 SERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGR 222

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC-- 417
           ++  +M+   G    +     L+D+  + G +D A  + + MP + D  +W AL+S C  
Sbjct: 223 QV-HAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMP-DSDVVSWNALISGCVL 280

Query: 418 --KHHRNTEMGTRVANHLLSLKPED--PSSYILLSNVYASAA 455
               HR  E+       LL +K     P+ ++L S + A A 
Sbjct: 281 NGHDHRAIEL-------LLQMKSSGLVPNVFMLSSILKACAG 315


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/585 (36%), Positives = 331/585 (56%), Gaps = 34/585 (5%)

Query: 26  HAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLP 85
           HA  I+ GL +   +   ++DAY KC  ++ A  + + MP ++ VSW +++  Y Q    
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 86  QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS 145
           ++ +++F+ M+       D  V A+L +ACG LG    G +VH   V      +  V ++
Sbjct: 244 REALALFNRMVEEGVDVTDVSVLAAL-QACGELGCLDEGMRVHELLVRIGLDSNVSVMNA 302

Query: 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLW 205
           L+ MY+KC                                R   A  +F++   R    W
Sbjct: 303 LITMYSKCK-------------------------------RVDLASHVFDELDRRTQVSW 331

Query: 206 TALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265
            A++ G  Q+    DA   F  M+ E V   D   L S++ A A+ +     + IHG  I
Sbjct: 332 NAMILGCAQNGCSEDAVRLFTRMQLENVK-PDSFTLVSVIPALADISDPLQARWIHGYSI 390

Query: 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA 325
            L  +  +++  A++DMYAKC  +  A+ +F   R + V++W ++I G   HG  +  + 
Sbjct: 391 RLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGKAAVE 450

Query: 326 LYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385
           L++EM S G+ PNE TF+ ++ ACSH GLV +GR+ F SM EDYG+ P ++HY  ++DLL
Sbjct: 451 LFEEMKSIGIVPNETTFLSVLSACSHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLL 510

Query: 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYI 445
            R+G LDEA   I+ MP +P    + A+L ACK H+N E+    A  +  L P++   ++
Sbjct: 511 GRAGKLDEAWAFIQKMPMDPGLSVYGAMLGACKLHKNVELAEESAQKIFELGPQEGVYHV 570

Query: 446 LLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFE 505
           LL+N+YA+A+MW+ V++VR  M    ++K PG+S I+     H FY+G T+H    EI+ 
Sbjct: 571 LLANIYANASMWKDVARVRTAMEKNGLQKTPGWSIIQLKNEIHTFYSGSTNHQQAKEIYS 630

Query: 506 LLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVK 565
            L +L  E+K  GYVPDT S+ HD+E   K + L  HSE+LA+A+GL+++ PGT +++ K
Sbjct: 631 RLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIAFGLIRTAPGTTIQIKK 689

Query: 566 NLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           NLRVC DCH   K+IS +T REI++RD  R+HHFKDGKCSC D+W
Sbjct: 690 NLRVCNDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDYW 734



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/442 (25%), Positives = 196/442 (44%), Gaps = 55/442 (12%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
            F SL+K C + G    G+ VHA         + +  ++L +MYAKC             
Sbjct: 61  TFTSLLKLCAARGDLATGRAVHAQLAARGIDSEALAATALANMYAKCR------------ 108

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
                              R  DA  +F++ PVR+   W ALV+G  ++     A    +
Sbjct: 109 -------------------RPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVV 149

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            M+ E  +  D + L S++ ACAN   L   ++ H   I  G E  + ++ AI+D Y KC
Sbjct: 150 RMQEEEGERPDSITLVSVLPACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKC 209

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
            DI AA+ +F  M  K+ VSW ++I G AQ+G + E LAL++ MV  GV   +V+ +  +
Sbjct: 210 GDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAAL 269

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            AC  +G + +G ++ + ++   G+  ++     L+ + S+   +D A ++   +     
Sbjct: 270 QACGELGCLDEGMRVHELLVR-IGLDSNVSVMNALITMYSKCKRVDLASHVFDELDRRT- 327

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA-------AMWQH 459
           + +W A++  C  +  +E   R+    + L+   P S+ L+S + A A       A W H
Sbjct: 328 QVSWNAMILGCAQNGCSEDAVRLFTR-MQLENVKPDSFTLVSVIPALADISDPLQARWIH 386

Query: 460 VSKVR--------KLMSVMEVKKEPGYSYI-----EFGKGSHIFYAGETSHPLKDEIF-E 505
              +R         L +++++  + G   I        +  H+       H      F +
Sbjct: 387 GYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNAMIHGYGSHGFGK 446

Query: 506 LLTELDAEMKRRGYVPDTSSVL 527
              EL  EMK  G VP+ ++ L
Sbjct: 447 AAVELFEEMKSIGIVPNETTFL 468


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/625 (35%), Positives = 350/625 (56%), Gaps = 59/625 (9%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA-----------NLPQKTIS 90
           N LI  + K  ++  A  + + MP R+ VSW S++  Y +            ++P K + 
Sbjct: 90  NGLISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVV 149

Query: 91  IFSTMLA-------------LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
            ++ ML              L  + P+  V A      G     RL  +  A F   P  
Sbjct: 150 SWTVMLGGLLQEGRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRL-DEARALFDEMPK- 207

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            + V  +++V  YA+ G  + AR +F+ +  +N VSWTAML  Y  SGR ++A  +F+  
Sbjct: 208 RNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAM 267

Query: 198 PVRNLFL-------------------------------WTALVSGLVQSRNEIDAFYSFI 226
           PV+ + +                               W+A++    +   E++A   F 
Sbjct: 268 PVKPVVVCNEMIMGFGLNGEVDKARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFR 327

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            M+REG+ +  P ++S ++  C + A L+ GKQ+H  ++   ++  L++++ ++ MY KC
Sbjct: 328 RMQREGLALNFPSLIS-VLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKC 386

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
            +++ AK +F R   KDVV W S+I G +QHG  EE L ++ +M S+GV P++VTF+G++
Sbjct: 387 GNLVRAKQVFNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVL 446

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            ACS+ G V +G +LF++M   Y + P ++HY CL+DLL R+  ++EA  L++ MP EPD
Sbjct: 447 SACSYSGKVKEGLELFETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPD 506

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKL 466
              W ALL AC+ H   ++       L  L+P++   Y+LLSN+YA    W+ V  +R+ 
Sbjct: 507 AIVWGALLGACRTHMKLDLAEVAVEKLAQLEPKNAGPYVLLSNMYAYKGRWRDVEVLREK 566

Query: 467 MSVMEVKKEPGYSYIEFGKGSHIFYAGET-SHPLKDEIFELLTELDAEMKRRGYVPDTSS 525
           +    V K PG S+IE  K  H+F  G++  HP +  I ++L +L   ++  GY PD S 
Sbjct: 567 IKARSVTKLPGCSWIEVEKKVHMFTGGDSKGHPEQPIIMKMLEKLGGLLREAGYCPDGSF 626

Query: 526 VLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITK 585
           VLHD++++EK   L +HSE+LAVAYGLLK   G  +RV+KNLRVCGDCH  +K+I+++T 
Sbjct: 627 VLHDVDEEEKTHSLGYHSEKLAVAYGLLKVPEGMPIRVMKNLRVCGDCHSAIKLIAKVTG 686

Query: 586 REIVVRDATRYHHFKDGKCSCNDFW 610
           REI++RDA R+HHFKDG CSC D+W
Sbjct: 687 REIILRDANRFHHFKDGHCSCKDYW 711



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 106/485 (21%), Positives = 199/485 (41%), Gaps = 99/485 (20%)

Query: 39  PLP-------NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISI 91
           PLP       N ++ AY +    + A  L E+MPQR+ VSW  +++ + +  +  +   +
Sbjct: 49  PLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRV 108

Query: 92  FSTMLALDKLQPDHFV--FASLVKACGSLG----ATRL---------------------- 123
           F TM       PD  V  + S+V+     G    A RL                      
Sbjct: 109 FDTM-------PDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQE 161

Query: 124 GKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           G+   A  +     + DVV  ++++  Y + G  + ARA+FD +  +N V+WTAM+S YA
Sbjct: 162 GRVDDARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYA 221

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           R+G+   A ++FE  P RN   WTA++ G           Y+     RE   + D + + 
Sbjct: 222 RNGKVDVARKLFEVMPERNEVSWTAMLLG-----------YTHSGRMREASSLFDAMPVK 270

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            +V                             + N ++  +    ++  A+ +F  M+ +
Sbjct: 271 PVV-----------------------------VCNEMIMGFGLNGEVDKARRVFKGMKER 301

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           D  +W+++I    + G   E L L+  M   G+  N  + + ++  C  +  +  G+++ 
Sbjct: 302 DNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCVSLASLDHGKQVH 361

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
             ++        L   + L+ +  + G+L  A+ +    P + D   W ++++    H  
Sbjct: 362 AQLVRSE-FDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLK-DVVMWNSMITGYSQHGL 419

Query: 423 TEMGTRVANHLLS--LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKK-----E 475
            E    V + + S  + P+D +   +LS    S        KV++ + + E  K     E
Sbjct: 420 GEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSG-------KVKEGLELFETMKCKYQVE 472

Query: 476 PGYSY 480
           PG  +
Sbjct: 473 PGIEH 477



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 120/258 (46%), Gaps = 20/258 (7%)

Query: 150 YAKCGLPNNARAVFDSIKLKNSV--SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTA 207
           YA+ G  ++AR VFD   L +    SW AM++AY  + + ++A+ +FE+ P RN   W  
Sbjct: 32  YARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKMPQRNTVSWNG 91

Query: 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267
           L+SG +++    +A   F  M    V     +V   +       A        H  V++ 
Sbjct: 92  LISGHIKNGMLSEARRVFDTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSW 151

Query: 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327
                  +    VD          A+ +F  M  KDVV+ T++I G  + G+ +E  AL+
Sbjct: 152 TVMLGGLLQEGRVD---------DARKLFDMMPEKDVVAVTNMIGGYCEEGRLDEARALF 202

Query: 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
           DEM     K N VT+  ++   +  G V   RKLF+ M E   ++     +T +L   + 
Sbjct: 203 DEM----PKRNVVTWTAMVSGYARNGKVDVARKLFEVMPERNEVS-----WTAMLLGYTH 253

Query: 388 SGHLDEAENLIKAMPFEP 405
           SG + EA +L  AMP +P
Sbjct: 254 SGRMREASSLFDAMPVKP 271



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 140/322 (43%), Gaps = 27/322 (8%)

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV--RNLFLWTALVSGLVQSRN 217
           R +   ++L+ + S +  ++ YAR+G+   A ++F++ P+  R +  W A+V+   ++R 
Sbjct: 11  RCMMLQVRLQCTTSSSYAIACYARNGQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQ 70

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             +A   F +M +      + L+   I     + A           V++           
Sbjct: 71  PREALLLFEKMPQRNTVSWNGLISGHIKNGMLSEARRVFDTMPDRNVVSW---------T 121

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           ++V  Y +  D+  A+ +F  M  K+VVSWT ++ G  Q G+ ++   L+D M    V  
Sbjct: 122 SMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLFDMMPEKDV-- 179

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
             V    +I      G + + R LF  M +   +T     +T ++   +R+G +D A  L
Sbjct: 180 --VAVTNMIGGYCEEGRLDEARALFDEMPKRNVVT-----WTAMVSGYARNGKVDVARKL 232

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
            + MP E +E +W A+L    H        R A+ L    P  P   ++ + +     + 
Sbjct: 233 FEVMP-ERNEVSWTAMLLGYTHSGR----MREASSLFDAMPVKP--VVVCNEMIMGFGLN 285

Query: 458 QHVSKVRKLMSVMEVKKEPGYS 479
             V K R++   M+ +    +S
Sbjct: 286 GEVDKARRVFKGMKERDNGTWS 307



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 82/173 (47%), Gaps = 4/173 (2%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HAQ+++    Q   + + LI  Y KC  +  A  +    P +D V W S++T Y+Q 
Sbjct: 358 KQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNSMITGYSQH 417

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            L ++ +++F  M +   + PD   F  ++ AC   G  + G ++          +  + 
Sbjct: 418 GLGEEALNVFHDMCS-SGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKYQVEPGIE 476

Query: 143 K-SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKKDAMEI 193
             + LVD+  +    N A  + + + ++ +++ W A+L A  R+  K D  E+
Sbjct: 477 HYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGA-CRTHMKLDLAEV 528


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/598 (34%), Positives = 336/598 (56%), Gaps = 32/598 (5%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA  ++    + +H+  +K    +     NTL+D Y KC  +  A  +  EM  R  VS+
Sbjct: 155 CADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSY 214

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            S++  Y +  L  + + +F  M   + + PD +   +++  C        GK+VH    
Sbjct: 215 TSMIAGYAREGLAGEAVKLFEEMEE-EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK 273

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
            +    D  V ++L+DMYAKCG    A  VF  +++K+ +SW  ++  Y+++    +A+ 
Sbjct: 274 ENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALS 333

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F      NL L     S                          D   ++ ++ ACA+ +
Sbjct: 334 LF------NLLLEEKRFS-------------------------PDERTVACVLPACASLS 362

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
             + G++IHG ++  GY S   ++N++VDMYAKC  ++ A  +F  +  KD+VSWT +I 
Sbjct: 363 AFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIA 422

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G   HG  +E +AL+++M  AG++ +E++FV L+YACSH GLV +G + F  M  +  I 
Sbjct: 423 GYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIE 482

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
           P+++HY C++D+L+R+G L +A   I+ MP  PD   W ALL  C+ H + ++  +VA  
Sbjct: 483 PTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEK 542

Query: 433 LLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYA 492
           +  L+PE+   Y+L++N+YA A  W+ V ++RK +    ++K PG S+IE     +IF A
Sbjct: 543 VFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVA 602

Query: 493 GETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGL 552
           G++S+P  + I   L ++ A M   GY P T   L D E+ EKE  L  HSE+LA+A G+
Sbjct: 603 GDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGI 662

Query: 553 LKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + S  G ++RV KNLRVCGDCH + K +S++T+REIV+RD+ R+H FKDG CSC  FW
Sbjct: 663 ISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 720



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 127/455 (27%), Positives = 216/455 (47%), Gaps = 74/455 (16%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH  I+K G  +   + N+L+  Y K   V  A  + +EM +RD +SW SI+  Y   
Sbjct: 64  EQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSN 123

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            L +K +S+F  ML +  ++ D     S+   C       LG+ VH+  V + F  +D  
Sbjct: 124 GLAEKGLSVFVQML-VSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRF 182

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+DMY+KCG  ++A+AVF  +  ++ VS+T+M++ YAR G   +A+++FE       
Sbjct: 183 CNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFE------- 235

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                   EM  EG+   D   +++++  CA + +L+ GK++H 
Sbjct: 236 ------------------------EMEEEGIS-PDVYTVTAVLNCCARYRLLDEGKRVHE 270

Query: 263 LVIA--LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
            +    LG++  +F+SNA++DMYAKC  +  A+ +F  MR KD++SW +II G +++  A
Sbjct: 271 WIKENDLGFD--IFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYA 328

Query: 321 EETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRK------------------- 360
            E L+L++ ++      P+E T   ++ AC+ +    KGR+                   
Sbjct: 329 NEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANS 388

Query: 361 -----------LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPD 406
                      L   M+ D   +  L  +T ++      G   EA  L   M     E D
Sbjct: 389 LVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEAD 448

Query: 407 EPTWAALLSACKHHRNTEMGTRVAN---HLLSLKP 438
           E ++ +LL AC H    + G R  N   H   ++P
Sbjct: 449 EISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEP 483



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 180/382 (47%), Gaps = 37/382 (9%)

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
            +E+     + W  ++    ++     +I +F  M++   ++ D + F+ + K+  SL +
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMS-SGVEMDSYTFSCVSKSFSSLRS 59

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
              G+Q+H   + S F + + V +SLV  Y K    ++AR VFD +  ++ +SW ++++ 
Sbjct: 60  VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 119

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           Y  +G  +  + +F Q           LVSG+                       +D   
Sbjct: 120 YVSNGLAEKGLSVFVQ----------MLVSGIE----------------------IDLAT 147

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           + S+   CA+  ++ LG+ +H + +   +       N ++DMY+KC D+ +AK +F  M 
Sbjct: 148 IVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMS 207

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            + VVS+TS+I G A+ G A E + L++EM   G+ P+  T   ++  C+   L+ +G++
Sbjct: 208 DRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKR 267

Query: 361 LFKSMIE-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           + + + E D G    + +   L+D+ ++ G + EAE +   M  + D  +W  ++     
Sbjct: 268 VHEWIKENDLGFDIFVSN--ALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGGYSK 324

Query: 420 HRNTEMGTRVANHLLSLKPEDP 441
           +        + N LL  K   P
Sbjct: 325 NCYANEALSLFNLLLEEKRFSP 346



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 143/310 (46%), Gaps = 34/310 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CAR+++    K +H  I +  L     + N L+D Y KC  +Q A  +  EM  +D 
Sbjct: 253 LNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDI 312

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW +I+  Y++     + +S+F+ +L   +  PD    A ++ AC SL A   G+++H 
Sbjct: 313 ISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHG 372

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + + +  D  V +SLVDMYAKCG    A  +FD I  K+ VSWT M++ Y   G  K+
Sbjct: 373 YIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKE 432

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +F Q                               MR+ G++  D +   S++ AC+
Sbjct: 433 AIALFNQ-------------------------------MRQAGIE-ADEISFVSLLYACS 460

Query: 250 NFAVLELGKQIHGLVI-ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSW 307
           +  +++ G +   ++      E  +     IVDM A+  D+I A      M    D   W
Sbjct: 461 HSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIW 520

Query: 308 TSIIVGTAQH 317
            +++ G   H
Sbjct: 521 GALLCGCRIH 530


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/598 (34%), Positives = 336/598 (56%), Gaps = 32/598 (5%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA  ++    + +H+  +K    +     NTL+D Y KC  +  A  +  EM  R  VS+
Sbjct: 306 CADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSY 365

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            S++  Y +  L  + + +F  M   + + PD +   +++  C        GK+VH    
Sbjct: 366 TSMIAGYAREGLAGEAVKLFEEMEE-EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIK 424

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
            +    D  V ++L+DMYAKCG    A  VF  +++K+ +SW  ++  Y+++    +A+ 
Sbjct: 425 ENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALS 484

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F      NL L     S                          D   ++ ++ ACA+ +
Sbjct: 485 LF------NLLLEEKRFS-------------------------PDERTVACVLPACASLS 513

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
             + G++IHG ++  GY S   ++N++VDMYAKC  ++ A  +F  +  KD+VSWT +I 
Sbjct: 514 AFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIA 573

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G   HG  +E +AL+++M  AG++ +E++FV L+YACSH GLV +G + F  M  +  I 
Sbjct: 574 GYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIE 633

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
           P+++HY C++D+L+R+G L +A   I+ MP  PD   W ALL  C+ H + ++  +VA  
Sbjct: 634 PTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEK 693

Query: 433 LLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYA 492
           +  L+PE+   Y+L++N+YA A  W+ V ++RK +    ++K PG S+IE     +IF A
Sbjct: 694 VFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIKGRVNIFVA 753

Query: 493 GETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGL 552
           G++S+P  + I   L ++ A M   GY P T   L D E+ EKE  L  HSE+LA+A G+
Sbjct: 754 GDSSNPETENIEAFLRKVRARMIEEGYSPLTKYALIDAEEMEKEEALCGHSEKLAMALGI 813

Query: 553 LKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + S  G ++RV KNLRVCGDCH + K +S++T+REIV+RD+ R+H FKDG CSC  FW
Sbjct: 814 ISSGHGKIIRVTKNLRVCGDCHEMAKFMSKLTRREIVLRDSNRFHQFKDGHCSCRGFW 871



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 102/448 (22%), Positives = 202/448 (45%), Gaps = 37/448 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L++CA  +     K +   I   G      L + L   Y  C  ++ A  + +E+     
Sbjct: 101 LQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKA 160

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           + W  ++    ++     +I +F  M++   ++ D + F+ + K+  SL +   G+Q+H 
Sbjct: 161 LFWNILMNELAKSGDFSGSIGLFKKMMS-SGVEMDSYTFSCVSKSFSSLRSVHGGEQLHG 219

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + S F + + V +SLV  Y                 LKN               R   
Sbjct: 220 FILKSGFGERNSVGNSLVAFY-----------------LKNQ--------------RVDS 248

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A ++F++   R++  W ++++G V +         F++M   G++I D   + S+   CA
Sbjct: 249 ARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEI-DLATIVSVFAGCA 307

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +  ++ LG+ +H + +   +       N ++DMY+KC D+ +AK +F  M  + VVS+TS
Sbjct: 308 DSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTS 367

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-D 368
           +I G A+ G A E + L++EM   G+ P+  T   ++  C+   L+ +G+++ + + E D
Sbjct: 368 MIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKEND 427

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
            G    + +   L+D+ ++ G + EAE +   M  + D  +W  ++     +        
Sbjct: 428 LGFDIFVSN--ALMDMYAKCGSMQEAELVFSEMRVK-DIISWNTIIGGYSKNCYANEALS 484

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAM 456
           + N LL  K   P    +   + A A++
Sbjct: 485 LFNLLLEEKRFSPDERTVACVLPACASL 512



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 143/310 (46%), Gaps = 34/310 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CAR+++    K +H  I +  L     + N L+D Y KC  +Q A  +  EM  +D 
Sbjct: 404 LNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDI 463

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW +I+  Y++     + +S+F+ +L   +  PD    A ++ AC SL A   G+++H 
Sbjct: 464 ISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHG 523

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + + +  D  V +SLVDMYAKCG    A  +FD I  K+ VSWT M++ Y   G  K+
Sbjct: 524 YIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKE 583

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +F Q                               MR+ G++  D +   S++ AC+
Sbjct: 584 AIALFNQ-------------------------------MRQAGIE-ADEISFVSLLYACS 611

Query: 250 NFAVLELGKQIHGLVI-ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSW 307
           +  +++ G +   ++      E  +     IVDM A+  D+I A      M    D   W
Sbjct: 612 HSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIW 671

Query: 308 TSIIVGTAQH 317
            +++ G   H
Sbjct: 672 GALLCGCRIH 681



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 112/469 (23%), Positives = 190/469 (40%), Gaps = 97/469 (20%)

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           K   D     S+++ C    + + GK+V      + F  D  + S L  MY  CG    A
Sbjct: 89  KWDIDPRTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEA 148

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
             VFD +K++ ++ W  +++  A+SG    ++ +F++                       
Sbjct: 149 SRVFDEVKIEKALFWNILMNELAKSGDFSGSIGLFKK----------------------- 185

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
                   M   GV++ D    S +  + ++   +  G+Q+HG ++  G+     + N++
Sbjct: 186 --------MMSSGVEM-DSYTFSCVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSL 236

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           V  Y K   + +A+ +F  M  +DV+SW SII G   +G AE+ L+++ +M+ +G++ + 
Sbjct: 237 VAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDL 296

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP--SLQHYTC--LLDLLSRSGHLDEAE 395
            T V +   C+   L+  GR      +   G+    S +   C  LLD+ S+ G LD A+
Sbjct: 297 ATIVSVFAGCADSRLISLGRA-----VHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAK 351

Query: 396 NLIKAMP--------------------------FE--------PDEPTWAALLSACKHHR 421
            + + M                           FE        PD  T  A+L+ C  +R
Sbjct: 352 AVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYR 411

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSN----VYASAAMWQHVSKVRKLMSVMEVKKEPG 477
             + G RV      +K  D    I +SN    +YA     Q    V    S M VK    
Sbjct: 412 LLDEGKRVHEW---IKENDLGFDIFVSNALMDMYAKCGSMQEAELV---FSEMRVKDIIS 465

Query: 478 YSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSV 526
           ++ I  G  S   YA E        +F LL E       + + PD  +V
Sbjct: 466 WNTI-IGGYSKNCYANEAL-----SLFNLLLE------EKRFSPDERTV 502


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/589 (35%), Positives = 335/589 (56%), Gaps = 34/589 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  ++K        + N L+D Y K D V     L  EMP+ D +S+  ++T+Y   
Sbjct: 261 QQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWN 320

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +++  +F   L   +     F FA+L+    S    R+G+Q+H   +      +  V
Sbjct: 321 GQFKESFDLFRK-LQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRV 379

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           +++LVDMYAKC                                  K+A +IF+    ++ 
Sbjct: 380 ENALVDMYAKCN-------------------------------GDKEAQKIFDNIACKST 408

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WTA++S  VQ     +    F +MRR GV   D    +SI+ ACAN A + LG+Q+H 
Sbjct: 409 VPWTAMISAYVQKGKHEEGINVFSDMRRTGVP-ADQATFASILRACANLASISLGRQLHS 467

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L+I  G+ S ++  +A++D YAKC  +  A   FG M  ++ VSW ++I   AQ+G  + 
Sbjct: 468 LLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDG 527

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
           TL  + +M+ +G KP+ V+F+ ++ ACSH G V +    F SM + Y +TP  +HYT ++
Sbjct: 528 TLNSFQQMIQSGYKPDSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMV 587

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP-EDP 441
           D+L R+G  DEAE L+  MPFEP E  W+++L++C+ H+N E+  + A+ L +++   D 
Sbjct: 588 DVLCRNGRFDEAEKLMTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDA 647

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
           + YI +SN+YA A  W +V+KV+K M    V+K P YS++E    +H+F A + SHP   
Sbjct: 648 APYINMSNIYAVAGQWDNVAKVKKAMRDRGVRKVPAYSWVEIKHQTHVFSANDKSHPEMK 707

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           +I   +  L  EM+++GY PDT+  LHD+++  K   L +HSER A+A+ L+ +  G+ +
Sbjct: 708 KILRKINALSKEMEKKGYKPDTTCALHDVDEVIKIESLKYHSERFAIAFALMNTPDGSPI 767

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            V+KNLR C DCH  +K+IS+I +REI+VRD++R+HHFKDG CSC D+W
Sbjct: 768 VVMKNLRACTDCHAAIKVISQIVEREIIVRDSSRFHHFKDGVCSCGDYW 816



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 121/248 (48%), Gaps = 10/248 (4%)

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A  VFD +  KN++S   M+S + + G+   A E+F+    R    WT L+ G +QS   
Sbjct: 62  AHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQS 121

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            +AF  + +MRR G++  D + L +++          +  QIH  VI LGYE  L + N+
Sbjct: 122 KEAFRLYADMRRGGIE-PDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNS 180

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           +VD Y K   +  A  +F  M  KD V++ S++ G +  G  EE + L+ E+ ++G+KP+
Sbjct: 181 LVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPS 240

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY----TCLLDLLSRSGHLDEA 394
           + TF  L+ A      VG     F   +  + +  +          LLD  S+   +DE 
Sbjct: 241 DFTFAALLSAA-----VGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEV 295

Query: 395 ENLIKAMP 402
             L   MP
Sbjct: 296 GKLFYEMP 303



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/429 (20%), Positives = 183/429 (42%), Gaps = 37/429 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +I  + K   +  A  L + M +R  VSW  ++  Y Q+N  ++   +++ M     +
Sbjct: 78  NMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRR-GGI 136

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PD+    +L+   G L    +  Q+H   +   +  + +V +SLVD Y K      A  
Sbjct: 137 EPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQ 196

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F  +  K++V++ ++++ Y+  G  ++A+E+F                           
Sbjct: 197 LFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELF--------------------------- 229

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
               +E+   G+   D    ++++ A       + G+Q+HG V+   +   +F+ NA++D
Sbjct: 230 ----LELHNSGIKPSD-FTFAALLSAAVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLD 284

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
            Y+K   +     +F  M   D +S+  +I   A +GQ +E+  L+ ++        +  
Sbjct: 285 YYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFP 344

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F  L+   +    +  GR++    I   G     +    L+D+ ++     EA+ +   +
Sbjct: 345 FATLLSIATSSLNLRMGRQIHCQAIT-VGANFESRVENALVDMYAKCNGDKEAQKIFDNI 403

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
             +   P W A++SA       E G  V + +   +   P+     +++  + A    +S
Sbjct: 404 ACKSTVP-WTAMISAYVQKGKHEEGINVFSDM--RRTGVPADQATFASILRACANLASIS 460

Query: 462 KVRKLMSVM 470
             R+L S++
Sbjct: 461 LGRQLHSLL 469



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 53/110 (48%), Gaps = 1/110 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR CA        + LH+ +I+ G        + L+D Y KC  +  A     EMP+R+ 
Sbjct: 450 LRACANLASISLGRQLHSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEMPERNS 509

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
           VSW ++++AY Q      T++ F  M+     +PD   F S++ AC   G
Sbjct: 510 VSWNALISAYAQNGNVDGTLNSFQQMIQ-SGYKPDSVSFLSVLSACSHCG 558


>gi|356502930|ref|XP_003520267.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 780

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/602 (35%), Positives = 336/602 (55%), Gaps = 2/602 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            +  +R ++      LH  +IK  L     + N+LI+ YG       AH +   MP +D 
Sbjct: 180 FKAASRLKVLHLGSVLHGMVIKASLSSDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDV 239

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++ A+    LP K + +F  M  +  ++P+     S++ AC        G+ + +
Sbjct: 240 VSWNAMINAFALGGLPDKALLLFQEM-EMKDVKPNVITMVSVLSACAKKIDLEFGRWICS 298

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               + F +  ++ ++++DMY KCG  N+A+ +F+ +  K+ VSWT ML  +A+ G   +
Sbjct: 299 YIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKLGNYDE 358

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  IF+  P +    W AL+S   Q+     A   F EM+       D + L   + A A
Sbjct: 359 AHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICALCASA 418

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               ++ G  IH  +          ++ +++DMYAKC ++  A ++F  + RKDV  W++
Sbjct: 419 QLGAIDFGHWIHVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVERKDVYVWSA 478

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I   A +GQ +  L L+  M+ A +KPN VTF  ++ AC+H GLV +G +LF+ M   Y
Sbjct: 479 MIGALAMYGQGKAALDLFSSMLEAYIKPNAVTFTNILCACNHAGLVNEGEQLFEQMEPLY 538

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI P +QHY C++D+  R+G L++A + I+ MP  P    W ALL AC  H N E+    
Sbjct: 539 GIVPQIQHYVCVVDIFGRAGLLEKAASFIEKMPIPPTAAVWGALLGACSRHGNVELAELA 598

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
             +LL L+P +  +++LLSN+YA A  W+ VS +RKLM   +VKKEP  S I+     H 
Sbjct: 599 YQNLLELEPCNHGAFVLLSNIYAKAGDWEKVSNLRKLMRDSDVKKEPWCSSIDVNGIVHE 658

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE-KERQLFWHSERLAV 548
           F  G+ SHP   +I+  L E+  + K  GY PD S++L   E+    E+ L  HSE+LA+
Sbjct: 659 FLVGDNSHPFSQKIYSKLDEISEKFKPIGYKPDMSNLLQLSEEDNLMEQSLNVHSEKLAI 718

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+GL+ +     +R+VKN+R+CGDCH   K++S++  R+I++RD  R+HHF+ GKCSC D
Sbjct: 719 AFGLISTASSQPIRIVKNIRICGDCHAFAKLVSQLYDRDILLRDRYRFHHFRGGKCSCLD 778

Query: 609 FW 610
           +W
Sbjct: 779 YW 780



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 195/431 (45%), Gaps = 68/431 (15%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYG--KCDLVQYAHHLLEEMPQRDHVSWASILT 77
           + +K +HA +++          + L+ AY    C  + YA ++  ++PQ +   W +++ 
Sbjct: 86  MQLKQIHAHMLRTSRFCDPYTASKLLTAYAISSCSCLIYAKNVFNQIPQPNLYCWNTLIR 145

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
            Y  ++ P ++  IF  ML      P+ F F  L KA   L    LG  +H   + +   
Sbjct: 146 GYASSSDPTQSFLIFLHMLHSCSEFPNKFTFPFLFKAASRLKVLHLGSVLHGMVIKASLS 205

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D  + +SL++ Y   G P+ A  VF ++  K+ VSW AM++A+A  G    A+ +F++ 
Sbjct: 206 SDLFILNSLINFYGSSGAPDLAHRVFTNMPGKDVVSWNAMINAFALGGLPDKALLLFQE- 264

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
                                       +EM+    +++    + S++ ACA    LE G
Sbjct: 265 ----------------------------MEMKDVKPNVI---TMVSVLSACAKKIDLEFG 293

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           + I   +   G+   L ++NA++DMY KC  I  AKD+F +M  KD+VSWT+++ G A+ 
Sbjct: 294 RWICSYIENNGFTEHLILNNAMLDMYVKCGCINDAKDLFNKMSEKDIVSWTTMLDGHAKL 353

Query: 318 GQAEETLALYDEM--------------------------------VSAGVKPNEVTFVGL 345
           G  +E   ++D M                                +S   KP+EVT +  
Sbjct: 354 GNYDEAHCIFDAMPHKWTAAWNALISAYEQNGKPRVALSLFHEMQLSKDAKPDEVTLICA 413

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP 405
           + A + +G +  G  +    I+ + I  +    T LLD+ ++ G+L++A  +  A+    
Sbjct: 414 LCASAQLGAIDFGHWI-HVYIKKHDINLNCHLATSLLDMYAKCGNLNKAMEVFHAVE-RK 471

Query: 406 DEPTWAALLSA 416
           D   W+A++ A
Sbjct: 472 DVYVWSAMIGA 482


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  416 bits (1068), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/583 (36%), Positives = 334/583 (57%), Gaps = 45/583 (7%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQR----DHVSWASILTAYNQANLPQKTISIFSTMLA 97
           N ++  Y +    + A  L E+M +     D V+W++ ++ Y Q  L  + + +   ML+
Sbjct: 299 NAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLS 358

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF-------CDDDVVKSSLVDMY 150
              ++P+     S++  C S+GA   GK++H   +  P         D+++V + L+DMY
Sbjct: 359 -SGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMY 417

Query: 151 AKCGLPNNARAVFDSI--KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           AKC   + ARA+FDS+  K ++ V+WT M+  Y++ G   DA +  E        L + +
Sbjct: 418 AKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHG---DANKALE--------LLSEM 466

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
                Q+R                    +   +S  + ACA+ A L +GKQIH   +   
Sbjct: 467 FEEDCQTRP-------------------NAFTISCALVACASLAALSIGKQIHAYALRNQ 507

Query: 269 YESC-LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327
             +  LF+SN ++DMYAKC DI  A+ +F  M  K+ V+WTS++ G   HG  EE L ++
Sbjct: 508 QNAVPLFVSNCLIDMYAKCGDIGDARLVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIF 567

Query: 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
           +EM   G K + VT + ++YACSH G++ +G + F  M  D+G++P  +HY CL+DLL R
Sbjct: 568 EEMRRIGFKLDGVTLLVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGR 627

Query: 388 SGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447
           +G L+ A  LI+ MP EP    W ALLS C+ H   E+G   A  +  L   +  SY LL
Sbjct: 628 AGRLNAALRLIEEMPMEPPPVVWVALLSCCRIHGKVELGEYAAKKITELASNNDGSYTLL 687

Query: 448 SNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELL 507
           SN+YA+A  W+ V+++R LM    +KK PG S++E  KG+  F+ G+ +HP   EI+++L
Sbjct: 688 SNMYANAGRWKDVTRIRSLMRHKGIKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVL 747

Query: 508 TELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNL 567
           ++    +K  GYVP+T   LHD++ +EK+  LF HSE+LA+AYG+L +  G  +R+ KNL
Sbjct: 748 SDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNL 807

Query: 568 RVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           RVCGDCH     +SRI   EI++RD++R+HHFK+G CSC  +W
Sbjct: 808 RVCGDCHTAFTYMSRIIDHEIILRDSSRFHHFKNGLCSCKGYW 850



 Score =  197 bits (502), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 119/394 (30%), Positives = 198/394 (50%), Gaps = 17/394 (4%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+  Y +C  +  A  + +EMP  D VSW SI+ +Y +   P+  + +FS M      
Sbjct: 166 NALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGF 225

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PD     +++  C S+G   LGKQ H   V S    +  V + LVDMYAK G+ + A  
Sbjct: 226 RPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANT 285

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR----NLFLWTALVSGLVQSRN 217
           VF ++ +K+ VSW AM++ Y++ GR +DA+ +FEQ        ++  W+A +SG  Q   
Sbjct: 286 VFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGL 345

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL-------GYE 270
             +A     +M   G+   + + L S++  CA+   L  GK+IH   I         G+ 
Sbjct: 346 GYEALGVCRQMLSSGIK-PNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHG 404

Query: 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRM--RRKDVVSWTSIIVGTAQHGQAEETLALYD 328
               + N ++DMYAKC  +  A+ +F  +  + +DVV+WT +I G +QHG A + L L  
Sbjct: 405 DENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLS 464

Query: 329 EMV--SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
           EM       +PN  T    + AC+ +  +  G+++    + +      L    CL+D+ +
Sbjct: 465 EMFEEDCQTRPNAFTISCALVACASLAALSIGKQIHAYALRNQQNAVPLFVSNCLIDMYA 524

Query: 387 RSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           + G + +A  +   M  E +E TW +L++    H
Sbjct: 525 KCGDIGDARLVFDNM-MEKNEVTWTSLMTGYGMH 557



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 196/443 (44%), Gaps = 77/443 (17%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH--VSWASILTAY 79
           VK +H +++  G+     L + LI  Y     + +A  LL   P  D     W S++ +Y
Sbjct: 44  VKLIHQKLLSFGILTLN-LTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSY 102

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
                  K +S F  M +L    PD++ F  + KACG + + R G   HA   ++ F  +
Sbjct: 103 GNNGRANKCLSSFCLMHSL-SWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSN 161

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             V ++LV MY++CG  ++AR VFD + + + VSW +++ +YA+ G+ K A+E+F +   
Sbjct: 162 VFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSK--- 218

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                       M  E     D + L +++  CA+     LGKQ
Sbjct: 219 ----------------------------MTNEFGFRPDDITLVNVLPPCASVGTRSLGKQ 250

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
            HG  +       +F+ N +VDMYAK   +  A  +F  M  KDVVSW +++ G +Q G+
Sbjct: 251 FHGFAVTSEMIQNMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGR 310

Query: 320 AEETLALYD-----------------------------------EMVSAGVKPNEVTFVG 344
            E+ + L++                                   +M+S+G+KPNEVT + 
Sbjct: 311 FEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLIS 370

Query: 345 LIYACSHVGLVGKGRKL------FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           ++  C+ VG +  G+++      +   +   G          L+D+ ++   +D A  + 
Sbjct: 371 VLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMF 430

Query: 399 KAM-PFEPDEPTWAALLSACKHH 420
            ++ P E D  TW  ++     H
Sbjct: 431 DSLSPKERDVVTWTVMIGGYSQH 453


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/589 (37%), Positives = 331/589 (56%), Gaps = 34/589 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K ++  +++ G      + N LID Y KC  +  A  +   M  +D VSW SI++ Y Q+
Sbjct: 327 KYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQS 386

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + +F  M+ +++ Q DH  +  L+     L   + GK +H+  + S    D  V
Sbjct: 387 GDLMEAMKLFKMMMIMEE-QADHITYLMLISLSTRLADLKFGKGLHSNGIKSGIYIDLSV 445

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+DMYAKC                               G   D+++IF      + 
Sbjct: 446 SNALIDMYAKC-------------------------------GEVGDSLKIFNSMGTLDT 474

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W  ++S  V+  +         +MR+  V + D       +  CA+ A   LGK+IH 
Sbjct: 475 VTWNTVISACVRFGDFATGLQVTTQMRKNKV-VPDMATFLVTLPMCASLAAKRLGKEIHC 533

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            ++  GYES L I NA+++MY+KC  + ++  +F RM R+DVV+WT +I     +G+ E+
Sbjct: 534 CLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRDVVTWTGMIYAYGMYGEGEK 593

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L  + +M  +G+ P+ V F+ LIYACSH GLV KG   F+ M   Y I P ++HY C++
Sbjct: 594 ALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFEKMKTHYKIDPMIEHYACVV 653

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLLSRS  + +AE  I+AMP EPD   WA++L AC+   + E   RV+  ++ L P+DP 
Sbjct: 654 DLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDMETAERVSRRIIELNPDDPG 713

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
             IL SN YA+   W  VS +RK +    +KK PGYS+IE GK  H+F +G+ S P  + 
Sbjct: 714 YSILASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEIGKKVHVFCSGDDSAPQSEA 773

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLF-WHSERLAVAYGLLKSVPGTVL 561
           I + L  L + M + GY+PD+  V  ++E++E++R+L   HSERLA+A+GLL + PGT L
Sbjct: 774 IHKSLEILYSLMAKEGYIPDSREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPL 833

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +V+KNLRVC DCH V K+IS+I  REI+VRDA R+H FKDG CSC D W
Sbjct: 834 QVMKNLRVCSDCHEVTKLISKIVGREILVRDANRFHLFKDGICSCKDRW 882



 Score =  165 bits (417), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 111/426 (26%), Positives = 203/426 (47%), Gaps = 40/426 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ CA    A     ++ QI+++G      + N L+D Y +  L+  A  + +EMP RD 
Sbjct: 113 IKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDL 172

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S+++ Y+     ++ + I+   L    + PD F  +S++ A  +L   + G+ +H 
Sbjct: 173 VSWNSLISGYSSHGYYEEALEIYHE-LRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHG 231

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + S      VV + L+ MY K   P +AR VFD + +++SV++  M+  Y +      
Sbjct: 232 FTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLK------ 285

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP--LVLSSIVGA 247
            +E+ E++                            ++M  E +D   P  L ++S++ A
Sbjct: 286 -LEMVEES----------------------------VKMFLENLDQFKPDILTVTSVLCA 316

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
           C +   L L K I+  ++  G+     + N ++D+YAKC D+I A+D+F  M  KD VSW
Sbjct: 317 CGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSW 376

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            SII G  Q G   E + L+  M+    + + +T++ LI   + +  +  G+ L  + I+
Sbjct: 377 NSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIK 436

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
             GI   L     L+D+ ++ G + ++  +  +M    D  TW  ++SAC    +   G 
Sbjct: 437 S-GIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMG-TLDTVTWNTVISACVRFGDFATGL 494

Query: 428 RVANHL 433
           +V   +
Sbjct: 495 QVTTQM 500



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 189/396 (47%), Gaps = 37/396 (9%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM-PQRDHVSWASILTAYN 80
           ++ +HA +I LGL         LID Y        +  +   + P ++   W SI+ A++
Sbjct: 23  LRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFS 82

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           +     K +  +   L   K+ PD + F S++KAC  L    +G  V+   +   F  D 
Sbjct: 83  KNGWFPKALEFYGK-LRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDL 141

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V ++LVDMY++ GL + AR VFD + +++ VSW +++S Y+  G  ++A+EI+ +  +R
Sbjct: 142 YVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHE--LR 199

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           N ++                              + D   +SS++ A AN  V++ G+ +
Sbjct: 200 NSWI------------------------------VPDSFTVSSVLPAFANLLVVKQGQGL 229

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG  +  G  S   ++N ++ MY K S    A+ +F  M  +D V++ ++I G  +    
Sbjct: 230 HGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMV 289

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           EE++ ++ E +    KP+ +T   ++ AC H+  +   + ++  M+   G          
Sbjct: 290 EESVKMFLENLDQ-FKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRA-GFVLESTVKNI 347

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           L+D+ ++ G +  A ++  +M  + D  +W +++S 
Sbjct: 348 LIDVYAKCGDMITARDVFNSMECK-DTVSWNSIISG 382



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 138/299 (46%), Gaps = 50/299 (16%)

Query: 177 MLSAYARSGRKKDAMEIFEQ-APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
           ++  Y+       ++ +F + +P +N+++W +++    ++     A   + ++R   V  
Sbjct: 45  LIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVS- 103

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
            D     S++ ACA     E+G  ++  ++ +G+ES L++ NA+VDMY++   +  A+ +
Sbjct: 104 PDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQV 163

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
           F  M  +D+VSW S+I G + HG  EE L +Y E+ ++ + P+  T   ++ A +++ +V
Sbjct: 164 FDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVV 223

Query: 356 GKG-----------------------------------RKLFKSMIEDYGITPSLQHYTC 380
            +G                                   R++F  M+    +  S+ + T 
Sbjct: 224 KQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMV----VRDSVTYNTM 279

Query: 381 LLDLLSRSGHLDEAENLIKAM-----PFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           +   L     L+  E  +K        F+PD  T  ++L AC H R+  +   + N++L
Sbjct: 280 ICGYL----KLEMVEESVKMFLENLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYML 334



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 86/177 (48%), Gaps = 3/177 (1%)

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQ 316
           ++IH LVI+LG +   F S  ++D Y+      ++  +F R+   K+V  W SII   ++
Sbjct: 24  RRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVFRRVSPAKNVYIWNSIIRAFSK 83

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           +G   + L  Y ++  + V P++ TF  +I AC+ +     G  ++K ++E  G    L 
Sbjct: 84  NGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILE-MGFESDLY 142

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
               L+D+ SR G L  A  +   MP   D  +W +L+S    H   E    + + L
Sbjct: 143 VGNALVDMYSRMGLLSRARQVFDEMPVR-DLVSWNSLISGYSSHGYYEEALEIYHEL 198



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/271 (22%), Positives = 118/271 (43%), Gaps = 32/271 (11%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
           ++ +L  L +CA        K +H  +++ G      + N LI+ Y KC  ++ +  + E
Sbjct: 509 MATFLVTLPMCASLAAKRLGKEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFE 568

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
            M +RD V+W  ++ AY      +K +  F  M     + PD  VF +L+ AC   G   
Sbjct: 569 RMSRRDVVTWTGMIYAYGMYGEGEKALESFVDM-EKSGIVPDSVVFIALIYACSHSGLVE 627

Query: 123 LGKQVHACF--VLSPFCDDDVVK--SSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAM 177
            G    ACF  + + +  D +++  + +VD+ ++    + A     ++ ++   S W ++
Sbjct: 628 KG---LACFEKMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASV 684

Query: 178 LSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS------FIEMRR- 230
           L A   SG     ME  E+   R + L            N  D  YS      +  +R+ 
Sbjct: 685 LRACRTSGD----METAERVSRRIIEL------------NPDDPGYSILASNAYAALRKW 728

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           + V ++   V    +     ++ +E+GK++H
Sbjct: 729 DKVSLIRKSVRDKHIKKNPGYSWIEIGKKVH 759


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 214/592 (36%), Positives = 333/592 (56%), Gaps = 35/592 (5%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           L  K +HA  IK  L     + NTL+D Y KC  ++Y+ H+ + M  +DH+SW +I+T Y
Sbjct: 383 LNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCY 442

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            Q++   + + IF      + ++ D  +  S+++AC  L    L KQ+H C+ +     D
Sbjct: 443 AQSSRHIEALEIFREAQK-EGIKVDPMMIGSILEACSGLETILLAKQLH-CYAIRNGLLD 500

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
            VVK+ ++D+Y +CG       V+ S+K+                         FE    
Sbjct: 501 LVVKNRIIDIYGECG------EVYHSLKM-------------------------FETVEQ 529

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
           +++  WT++++    S    +A   F EM+   V   D + L SI+GA    + L  GK+
Sbjct: 530 KDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQ-PDSVALVSILGAIGGLSSLAKGKE 588

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           +HG +I   +     I +++VDMY+ C  +  A  +F  ++ KD+V WT++I  T  HG 
Sbjct: 589 VHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGH 648

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
            ++ + L+  M+  GV P+ V+F+ L+YACSH  LV +G+     M+  Y + P  +HY 
Sbjct: 649 GKQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYA 708

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++DLL RSG  +EA   IK+MP +P    W +LL AC+ H+N E+    AN LL L+P+
Sbjct: 709 CVVDLLGRSGQTEEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPD 768

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           +P +Y+L+SNV+A    W +  +VR  +S   ++K+P  S+IE G   H F   + SH  
Sbjct: 769 NPGNYVLVSNVFAEMGKWNNAKEVRARISERGLRKDPACSWIEIGNNVHTFTTRDNSHRD 828

Query: 500 KDEIFELLTELDAEMKRR-GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
            + I   L E+   +++  GY  DT SVLHD+ ++EK   L  HSERLA+++GL+ + PG
Sbjct: 829 AERINLKLAEITERLRKEGGYTEDTRSVLHDVSEEEKVDVLHRHSERLAISFGLINTRPG 888

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             LR+ KNLRVCGDCH   K++S++  R+IVVRDA R+HHF  G CSC DFW
Sbjct: 889 MPLRIAKNLRVCGDCHEFTKLVSKLFDRDIVVRDANRFHHFSGGSCSCGDFW 940



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 181/421 (42%), Gaps = 64/421 (15%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM-PQRDHVSWASILTAYNQAN 83
           +H   +K GL +   + N LI  Y KC ++  A  + E M   RD  SW S+++   Q  
Sbjct: 186 VHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNG 245

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
           +  + + +F  M     L  + +    +++ C  L    LG+++HA  +L    + ++  
Sbjct: 246 MFLQALDLFRGM-QRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAA-LLKSGSEVNIQC 303

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           ++L+ MY KCG  ++A  VF  I  K+ +SW +MLS Y ++G   +A+E           
Sbjct: 304 NALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFIS-------- 355

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
                                  EM R G    D   + S+  A  +   L  GK++H  
Sbjct: 356 -----------------------EMLRGGFQ-PDHACIVSLSSAVGHLGWLLNGKEVHAY 391

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
            I    +S   + N ++DMY KC  I  +  +F RMR KD +SWT+II   AQ  +  E 
Sbjct: 392 AIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEA 451

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF--------------KSMIEDY 369
           L ++ E    G+K + +    ++ ACS +  +   ++L                 +I+ Y
Sbjct: 452 LEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNRIIDIY 511

Query: 370 GITPSLQH---------------YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           G    + H               +T +++  + SG L+EA  L   M     +P   AL+
Sbjct: 512 GECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALV 571

Query: 415 S 415
           S
Sbjct: 572 S 572



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 182/409 (44%), Gaps = 41/409 (10%)

Query: 12  VCARHQIALTVKTLHAQIIKLGLHQY--GPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           V A+  +A  V+ +HA  +  G  +   G L   L+  YGKC  V  A  L + M  R  
Sbjct: 68  VAAKKAVAQGVQ-VHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTV 126

Query: 70  VSWASILTAYNQANLPQKTISIFSTML--ALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
            SW +++ AY  +    + + ++  M   A   + PD    AS++KA G  G  R G +V
Sbjct: 127 FSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEV 186

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI-KLKNSVSWTAMLSAYARSGR 186
           H   V         V ++L+ MYAKCG+ ++A  VF+ +   ++  SW +M+S   ++G 
Sbjct: 187 HGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGM 246

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
              A+++F       L + +    G++Q                                
Sbjct: 247 FLQALDLFRGMQRAVLSMNSYTTVGVLQ-------------------------------- 274

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
            C   A L LG+++H  ++  G E  +   NA++ MY KC  + +A  +F  +  KD +S
Sbjct: 275 VCTELAQLNLGRELHAALLKSGSEVNI-QCNALLVMYTKCGRVDSALRVFREIDEKDYIS 333

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W S++    Q+G   E +    EM+  G +P+    V L  A  H+G +  G+++    I
Sbjct: 334 WNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAI 393

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
           +   +    Q    L+D+  +  +++ + ++   M  + D  +W  +++
Sbjct: 394 KQR-LDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIK-DHISWTTIIT 440



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 10/168 (5%)

Query: 257 GKQIHGLVIALGYESC--LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
           G Q+H   +A G       F++  ++ MY KC  +  A+ +F  M  + V SW ++I   
Sbjct: 77  GVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAY 136

Query: 315 AQHGQAEETLALYDEM---VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK--SMIEDY 369
              G A E L +Y  M    ++GV P+  T   ++ A    G+ G GR   +   +   +
Sbjct: 137 LSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKAS---GVEGDGRCGCEVHGLAVKH 193

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417
           G+  S      L+ + ++ G LD A  + + M    D  +W +++S C
Sbjct: 194 GLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGC 241


>gi|242094040|ref|XP_002437510.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
 gi|241915733|gb|EER88877.1| hypothetical protein SORBIDRAFT_10g028370 [Sorghum bicolor]
          Length = 653

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 230/608 (37%), Positives = 349/608 (57%), Gaps = 22/608 (3%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNT--------------LIDAYGKCDLVQYAHHLLEEMPQR 67
           ++ LH  +++L  H Y PLP+T               +        ++YA  +   +   
Sbjct: 49  LRHLHGLLVRL--HPYLPLPSTPFLLSRLLRRLAALPLPLPPTPTPLRYAVAVFSSLSPP 106

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALD--KLQPDHFVFASLVKACGSLGATRLGK 125
           D    A++L   +    P +T  +FS +       L    F F+ L K+  +  +     
Sbjct: 107 DPFLAAALLRFAHLTQPPLETFRVFSGLRRAHGRDLPFLPFAFSPLAKSAAAARSLPAAA 166

Query: 126 QVHAC-FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
             HA   +L  F     V++SL+  Y  CG    AR V D + +K+ +SWT++++AY+RS
Sbjct: 167 GAHAVSLLLGGFDKHRFVENSLIGAYVACGDVGAARKVLDEMVVKDVISWTSIVAAYSRS 226

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
                A E+F   PV+++  WTA+V+G  Q+   + A  +F +M   G+ I D + L+  
Sbjct: 227 RDMGSAEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAGAGMPI-DEVSLTGA 285

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + ACA    +     I  +    G    + + + +VDMYAKC  I  A  +F  M+ K+V
Sbjct: 286 ISACAQLGAVRRAVWIQEIADRSGLGRNVVVGSGLVDMYAKCGLIDEACRVFEGMQEKNV 345

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
            +++S+IVG A HG+A + +AL+++MV  A V+PN VTF+G++ ACSH G+V +GR  F 
Sbjct: 346 YTYSSMIVGLASHGRANDAIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFA 405

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
            M + YGI PS  HYTC++DLL R+G + EA +L+K+M  EP    W ALL AC+ H NT
Sbjct: 406 QMKDRYGILPSADHYTCMVDLLGRAGLVIEALDLVKSMTVEPHGGVWGALLGACRIHGNT 465

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           ++    A HL  L+PE   +Y+LLSN  ASA  W  VSKVRKLM +  +KK+P  S  E 
Sbjct: 466 KVAKVAAQHLFKLEPEGIGNYVLLSNTLASAGEWDEVSKVRKLMRIRGLKKDPAVSSFEG 525

Query: 484 GKG-SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWH 542
             G  H F+AG+ +HP   EI + L EL A +K  GYVP  SSV++++  +EKER L  H
Sbjct: 526 RDGLVHQFFAGDNTHPWMHEIKKTLLELRARLKLAGYVPVLSSVVYNVSDEEKERLLMGH 585

Query: 543 SERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           SE+LA+++GLL     + +R+VKNLR+C DCH+ ++++S++   EI+VRD  R+HHF+DG
Sbjct: 586 SEKLALSFGLLTLESRSSIRIVKNLRICEDCHLFIRLVSKVEPIEIIVRDNMRFHHFRDG 645

Query: 603 KCSCNDFW 610
           +CSC  FW
Sbjct: 646 ECSCGGFW 653


>gi|334185549|ref|NP_188908.2| uncharacterized protein [Arabidopsis thaliana]
 gi|332643144|gb|AEE76665.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 938

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 220/601 (36%), Positives = 344/601 (57%), Gaps = 3/601 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CA+ +   T + ++A I   G+     + + L+D Y KC+ +  A  L +E    + 
Sbjct: 243 ISACAKLEDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNL 302

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
               ++ + Y +  L ++ + +F+ M+    ++PD     S + +C  L     GK  H 
Sbjct: 303 DLCNAMASNYVRQGLTREALGVFNLMMD-SGVRPDRISMLSAISSCSQLRNILWGKSCHG 361

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + + F   D + ++L+DMY KC   + A  +FD +  K  V+W ++++ Y  +G    
Sbjct: 362 YVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDA 421

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR-REGVDIVDPLVLSSIVGAC 248
           A E FE  P +N+  W  ++SGLVQ     +A   F  M+ +EGV+  D + + SI  AC
Sbjct: 422 AWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVN-ADGVTMMSIASAC 480

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
            +   L+L K I+  +   G +  + +   +VDM+++C D  +A  IF  +  +DV +WT
Sbjct: 481 GHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWT 540

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           + I   A  G AE  + L+D+M+  G+KP+ V FVG + ACSH GLV +G+++F SM++ 
Sbjct: 541 AAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKL 600

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           +G++P   HY C++DLL R+G L+EA  LI+ MP EP++  W +LL+AC+   N EM   
Sbjct: 601 HGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAY 660

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            A  +  L PE   SY+LLSNVYASA  W  ++KVR  M    ++K PG S I+    +H
Sbjct: 661 AAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTH 720

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F +G+ SHP    I  +L E+       G+VPD S+VL D+++KEK   L  HSE+LA+
Sbjct: 721 EFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAM 780

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           AYGL+ S  GT +R+VKNLRVC DCH   K  S++  REI++RD  R+H+ + GKCSC D
Sbjct: 781 AYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGD 840

Query: 609 F 609
           F
Sbjct: 841 F 841



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 117/464 (25%), Positives = 207/464 (44%), Gaps = 68/464 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA+ +       +H  I+K+G  +   + N+L+  Y +C  +  A  + +EM +R+ 
Sbjct: 141 LSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNV 200

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S++  Y + +  +  + +F  M+  +++ P+      ++ AC  L     G++V+A
Sbjct: 201 VSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVYA 260

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               S    +D++ S+LVDMY KC   + A+ +FD     N     AM S Y R G  ++
Sbjct: 261 FIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTRE 320

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +F      NL + + +                            D + + S + +C+
Sbjct: 321 ALGVF------NLMMDSGVRP--------------------------DRISMLSAISSCS 348

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               +  GK  HG V+  G+ES   I NA++DMY KC     A  IF RM  K VV+W S
Sbjct: 349 QLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNS 408

Query: 310 IIVGTAQHGQAE------ETL------------------ALYDEMVSA--------GVKP 337
           I+ G  ++G+ +      ET+                  +L++E +          GV  
Sbjct: 409 IVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNA 468

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           + VT + +  AC H+G +   + ++   IE  GI   ++  T L+D+ SR G  + A ++
Sbjct: 469 DGVTMMSIASACGHLGALDLAKWIYY-YIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSI 527

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPE 439
             ++    D   W A + A     N E    + + ++   LKP+
Sbjct: 528 FNSLT-NRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPD 570



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 133/281 (47%), Gaps = 32/281 (11%)

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
           + S++  Y  + L  + I +F  M+    + PD + F   + AC    A   G Q+H   
Sbjct: 102 YNSLIRGYASSGLCNEAILLFLRMMN-SGISPDKYTFPFGLSACAKSRAKGNGIQIHGLI 160

Query: 132 VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
           V   +  D  V++SLV  YA+CG  ++AR VFD +  +N VSWT+M+  YAR    KDA+
Sbjct: 161 VKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAV 220

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
           ++F                              F  +R E V   + + +  ++ ACA  
Sbjct: 221 DLF------------------------------FRMVRDEEV-TPNSVTMVCVISACAKL 249

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
             LE G++++  +   G E    + +A+VDMY KC+ I  AK +F      ++    ++ 
Sbjct: 250 EDLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMA 309

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
               + G   E L +++ M+ +GV+P+ ++ +  I +CS +
Sbjct: 310 SNYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQL 350



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 111/211 (52%), Gaps = 4/211 (1%)

Query: 190 AMEIFEQA-PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           A E+FE +      F++ +L+ G   S    +A   F+ M   G+   D       + AC
Sbjct: 86  AKEVFENSESYGTCFMYNSLIRGYASSGLCNEAILLFLRMMNSGIS-PDKYTFPFGLSAC 144

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A       G QIHGL++ +GY   LF+ N++V  YA+C ++ +A+ +F  M  ++VVSWT
Sbjct: 145 AKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWT 204

Query: 309 SIIVGTAQHGQAEETLALYDEMV-SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           S+I G A+   A++ + L+  MV    V PN VT V +I AC+ +  +  G K++ + I 
Sbjct: 205 SMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY-AFIR 263

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           + GI  +    + L+D+  +   +D A+ L 
Sbjct: 264 NSGIEVNDLMVSALVDMYMKCNAIDVAKRLF 294



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 120/262 (45%), Gaps = 42/262 (16%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC--------------- 51
           L  +  C++ +  L  K+ H  +++ G   +  + N LID Y KC               
Sbjct: 341 LSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSN 400

Query: 52  ----------------DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTM 95
                             V  A    E MP+++ VSW +I++   Q +L ++ I +F +M
Sbjct: 401 KTVVTWNSIVAGYVENGEVDAAWETFETMPEKNIVSWNTIISGLVQGSLFEEAIEVFCSM 460

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
            + + +  D     S+  ACG LGA  L K ++     +    D  + ++LVDM+++CG 
Sbjct: 461 QSQEGVNADGVTMMSIASACGHLGALDLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGD 520

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL---------FLWT 206
           P +A ++F+S+  ++  +WTA + A A +G  + A+E+F+    + L          L  
Sbjct: 521 PESAMSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAFVGALTA 580

Query: 207 ALVSGLVQSRNEIDAFYSFIEM 228
               GLVQ   EI  FYS +++
Sbjct: 581 CSHGGLVQQGKEI--FYSMLKL 600


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/608 (36%), Positives = 339/608 (55%), Gaps = 39/608 (6%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  L+ CA        K +HA I   GL     +   L+  YGKC  +  A  + + + 
Sbjct: 132 YMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLM 191

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDK--LQPDHFVFASLVKACGSLGATRL 123
             D +SW  ++ AY Q+   ++    +  ML +++   +P+   + S++ AC S GA + 
Sbjct: 192 NHDIISWTVMIGAYAQSGNGKEA---YRLMLQMEQEGFKPNAITYVSILNACASEGALKW 248

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDS-IKLKNSVSWTAMLSAYA 182
            K+VH                               R   D+ ++L   V  TA++  YA
Sbjct: 249 VKRVH-------------------------------RHALDAGLELDVRVG-TALVQMYA 276

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           +SG   DA  +F++  VR++  W  ++    +     +A+  F++M+ EG    D ++  
Sbjct: 277 KSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCK-PDAIMFL 335

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           SI+ ACA+   LE  K+IH   +  G E  + +  A+V MY+K   I  A+ +F RM+ +
Sbjct: 336 SILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVR 395

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           +VVSW ++I G AQHG  ++ L ++  M + GVKP+ VTFV ++ ACSH GLV +GR  +
Sbjct: 396 NVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQY 455

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
            +M + YGI P + H  C++DLL R+G L EA+  I  M  +PDE TW ALL +C+ + N
Sbjct: 456 LAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGN 515

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
            E+G  VA   L L P++ ++Y+LLSN+YA A  W  VS VR +M    ++KEPG S+IE
Sbjct: 516 VELGELVAKERLKLDPKNAATYVLLSNIYAEAGKWDMVSWVRTMMRERGIRKEPGRSWIE 575

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWH 542
                H F   ++SHP   EI E   ++  ++K  GY+PDT  VL +   K+KE  +  H
Sbjct: 576 VDNKIHDFLVADSSHPECKEINESKDKVIEKIKAEGYIPDTRLVLKNKNMKDKELDICSH 635

Query: 543 SERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           SE+LA+ YGL+ + PG  +RV KNLRVC DCH   K+IS++  REI+VRDA R+HHFKDG
Sbjct: 636 SEKLAIVYGLMHTPPGNPIRVFKNLRVCTDCHGATKLISKVEGREIIVRDANRFHHFKDG 695

Query: 603 KCSCNDFW 610
            CSC D+W
Sbjct: 696 VCSCGDYW 703



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/415 (27%), Positives = 207/415 (49%), Gaps = 35/415 (8%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  L+ C + +  +  K +H  IIK  + Q   + N L+  Y +C  +Q A  + + + 
Sbjct: 31  YVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALV 90

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           ++   SW +++  Y +    +  + +F  M   + +QP+   +  ++KAC SL A + GK
Sbjct: 91  KKSGASWNAMIAGYVEHKHAEDAMRLFREMCH-EGVQPNAGTYMIILKACASLSALKWGK 149

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           +VHAC        D  V ++L+ MY KCG  N AR +FD++   + +SWT M+ AYA+SG
Sbjct: 150 EVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSG 209

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             K+A  +                                ++M +EG    + +   SI+
Sbjct: 210 NGKEAYRL-------------------------------MLQMEQEGFK-PNAITYVSIL 237

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            ACA+   L+  K++H   +  G E  + +  A+V MYAK   I  A+ +F RM+ +DVV
Sbjct: 238 NACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVV 297

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SW  +I   A+HG+  E   L+ +M + G KP+ + F+ ++ AC+  G +   +K+ +  
Sbjct: 298 SWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHA 357

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           + D G+   ++  T L+ + S+SG +D+A  +   M    +  +W A++S    H
Sbjct: 358 L-DSGLEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVR-NVVSWNAMISGLAQH 410



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 179/387 (46%), Gaps = 43/387 (11%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           L  D F++  ++K C         KQVH C + S    +  V ++L+ +Y +CG    AR
Sbjct: 24  LITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEAR 83

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            VFD++  K+  S                               W A+++G V+ ++  D
Sbjct: 84  CVFDALVKKSGAS-------------------------------WNAMIAGYVEHKHAED 112

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
           A   F EM  EGV   +      I+ ACA+ + L+ GK++H  +   G ES + +  A++
Sbjct: 113 AMRLFREMCHEGVQ-PNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDVRVGTALL 171

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
            MY KC  I  A+ IF  +   D++SWT +I   AQ G  +E   L  +M   G KPN +
Sbjct: 172 RMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAI 231

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           T+V ++ AC+  G +   +++ +  + D G+   ++  T L+ + ++SG +D+A  +   
Sbjct: 232 TYVSILNACASEGALKWVKRVHRHAL-DAGLELDVRVGTALVQMYAKSGSIDDARVVFDR 290

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE--DPSSYILLS--NVYASAAM 456
           M    D  +W  ++ A   H     G    +  L ++ E   P + + LS  N  ASA  
Sbjct: 291 MKVR-DVVSWNVMIGAFAEHGR---GHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGA 346

Query: 457 WQHVSKVRK--LMSVMEVKKEPGYSYI 481
            + V K+ +  L S +EV    G + +
Sbjct: 347 LEWVKKIHRHALDSGLEVDVRVGTALV 373



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 119/257 (46%), Gaps = 9/257 (3%)

Query: 213 VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC 272
           VQ+ N +      +  R +   I D  +   ++  C     L   KQ+H  +I    E  
Sbjct: 3   VQTANTLSEAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQN 62

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
             + N ++ +Y +C  +  A+ +F  + +K   SW ++I G  +H  AE+ + L+ EM  
Sbjct: 63  AHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCH 122

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
            GV+PN  T++ ++ AC+ +  +  G+++  + I   G+   ++  T LL +  + G ++
Sbjct: 123 EGVQPNAGTYMIILKACASLSALKWGKEVH-ACIRHGGLESDVRVGTALLRMYGKCGSIN 181

Query: 393 EAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE----DPSSYILLS 448
           EA  +   +    D  +W  ++ A     N +   R+   +L ++ E    +  +Y+ + 
Sbjct: 182 EARRIFDNL-MNHDIISWTVMIGAYAQSGNGKEAYRL---MLQMEQEGFKPNAITYVSIL 237

Query: 449 NVYASAAMWQHVSKVRK 465
           N  AS    + V +V +
Sbjct: 238 NACASEGALKWVKRVHR 254


>gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Vitis vinifera]
 gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 213/589 (36%), Positives = 329/589 (55%), Gaps = 34/589 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL---EEMPQRDHVSWASILTAYNQ 81
           LH  IIKLG      +      A    D + YA  L+   E+    D   +++I+ AY +
Sbjct: 26  LHTHIIKLGFQNNPLVLTKFTSASSNLDAIPYAMSLVFSVEDARVYDAFLFSTIIRAYAE 85

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
           ++  +     +  ++    + P+ + F  ++KAC  L    LGK VH   V   F DD  
Sbjct: 86  SSQSKHNAIFYYNLMLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIF 145

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V++++V MY  C                              SG  + A ++F++ P  +
Sbjct: 146 VQNTMVHMYCCC------------------------------SGGMEFARKLFDEMPKLD 175

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
              WTA++ G  +      A   F +M+  GV   D + + S++ AC +   LELGK I 
Sbjct: 176 PVTWTAMIGGYARLGQSAGAVGLFRKMQIAGV-CPDDVTMVSVLSACTDLGALELGKWIE 234

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             +        + +SNA+VDM+AKC D+  A  +F  M ++ +VSWTS+IVG A HG+  
Sbjct: 235 SYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGL 294

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E ++L++EM ++G+ P ++ F+GL+ ACSH GLV +GR+ F  M   +GI P ++HY C+
Sbjct: 295 EAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMTRQFGIVPKIEHYGCM 354

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLLSR+G + EA   ++ MP EP+   W  L+SAC+ H   ++G  ++  L+  +P   
Sbjct: 355 VDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLGESISKQLIRNEPMHE 414

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
           S+Y+LLSN+Y     W+  SK+R  M    ++K PG + IE     H F  G+ SH   +
Sbjct: 415 SNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNEIHEFIVGDRSHNQYN 474

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           EI +++ E+  EMKR GY P T+ V  D+++++KE  L  HSE+LA+A+ LL + PG+ +
Sbjct: 475 EIIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKLAIAFALLNTPPGSPI 534

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+ KNLRVCGDCH   K IS+I  REIV+RD +R+HHF+DG+CSC DFW
Sbjct: 535 RITKNLRVCGDCHSASKFISKIYNREIVMRDRSRFHHFRDGQCSCGDFW 583



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 140/319 (43%), Gaps = 48/319 (15%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL-VQYAHHLLEEMPQRD 68
           L+ CA  +     K +H  ++K G      + NT++  Y  C   +++A  L +EMP+ D
Sbjct: 116 LKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSGGMEFARKLFDEMPKLD 175

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            V+W +++  Y +       + +F  M  +  + PD     S++ AC  LGA  LGK + 
Sbjct: 176 PVTWTAMIGGYARLGQSAGAVGLFRKM-QIAGVCPDDVTMVSVLSACTDLGALELGKWIE 234

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           +            + ++LVDM+AKCG  + A  +F ++  +  VSWT+++   A  GR  
Sbjct: 235 SYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVSWTSVIVGLAMHGRGL 294

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A+ +FE                               EM+  G+ + + +    ++ AC
Sbjct: 295 EAVSLFE-------------------------------EMKASGM-VPEDIAFIGLLSAC 322

Query: 249 ANFAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR- 300
           ++  ++E G+Q         G+V  + +  C+      VD+ ++   +  A +   RM  
Sbjct: 323 SHSGLVERGRQYFSEMTRQFGIVPKIEHYGCM------VDLLSRAGLVTEALEFVERMPI 376

Query: 301 RKDVVSWTSIIVGTAQHGQ 319
             + + W ++I     HG+
Sbjct: 377 EPNPIIWRTLISACRVHGE 395


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 228/674 (33%), Positives = 352/674 (52%), Gaps = 73/674 (10%)

Query: 8   HRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR 67
           H ++  AR +     K LHA +I+ G      L N  ++ Y KC  + Y   L ++M QR
Sbjct: 80  HLIQTYARTKELNKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQR 139

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           + VSW SI+T +   +  Q+ +S F  M    ++    F  +S+++AC SLGA + G QV
Sbjct: 140 NMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIAT-QFALSSVLQACTSLGAIQFGTQV 198

Query: 128 HACFVLSPF-------------------------------CDDDVVKSSLVDMYAKCG-- 154
           H   V   F                               C D V+ +S++D + K G  
Sbjct: 199 HCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDF 258

Query: 155 ---LPNNARAVFDSIKLKNSVSWT----------------------------------AM 177
              L    + V D + +   V  +                                  A+
Sbjct: 259 KKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETFIGNAL 318

Query: 178 LSAYARSGRKKDAMEIFE-QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
              Y++SG    A  +F+  +   ++   TA++ G V+      A  +F+++RR G++  
Sbjct: 319 TDMYSKSGDMVSASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIE-P 377

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           +    +S++ ACAN A LE G Q+HG V+   ++   F+S+ +VDMY KC     +  +F
Sbjct: 378 NEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLF 437

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
             +   D ++W +++   +QHG     +  ++ M+  G+KPN VTFV L+  CSH G+V 
Sbjct: 438 DEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVE 497

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G   F SM + YG+ P  +HY+C++DLL R+G L EAE+ I  MPFEP+   W + L A
Sbjct: 498 DGLNYFSSMEKIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGA 557

Query: 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEP 476
           CK H + E     A+ L+ L+PE+  +++LLSN+YA    W+ V  +RK++    + K P
Sbjct: 558 CKIHGDMERAKFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLP 617

Query: 477 GYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKE 536
           GYS+++    +H+F   + SHP K EI+E L  L  ++KR GYVP T SVL DM+   KE
Sbjct: 618 GYSWVDIRNKTHVFGVEDWSHPQKKEIYEKLDNLLDQIKRIGYVPQTESVLIDMDDNLKE 677

Query: 537 RQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRY 596
           + L +HSER+AVA+ LL    G  + V KNLRVC DCH  +K IS++T+R I+VRD +R+
Sbjct: 678 KLLHYHSERIAVAFSLLTCPTGMPIIVKKNLRVCSDCHSALKFISKVTERNIIVRDISRF 737

Query: 597 HHFKDGKCSCNDFW 610
           HHF +G CSC D+W
Sbjct: 738 HHFSNGSCSCGDYW 751



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 101/205 (49%), Gaps = 2/205 (0%)

Query: 212 LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271
           +++   EI +F     +   G  + D   ++ ++   A    L  GKQ+H ++I  G   
Sbjct: 49  VLEGVEEIISFSFLKNLFGSGHKLSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLP 108

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
             F+SN  +++Y+KC ++     +F +M ++++VSWTSII G A + + +E L+ + +M 
Sbjct: 109 NTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMR 168

Query: 332 SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
             G    +     ++ AC+ +G +  G ++   ++   G    L   + L D+ S+ G L
Sbjct: 169 IEGEIATQFALSSVLQACTSLGAIQFGTQV-HCLVVKCGFGCELFVGSNLTDMYSKCGEL 227

Query: 392 DEAENLIKAMPFEPDEPTWAALLSA 416
            +A    + MP + D   W +++  
Sbjct: 228 SDACKAFEEMPCK-DAVLWTSMIDG 251


>gi|356546516|ref|XP_003541672.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 591

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 216/606 (35%), Positives = 352/606 (58%), Gaps = 43/606 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGP-----LPNTLIDAYGKCDLVQYAHHLLEEM 64
           L+ CA  +  L  K +HA  I+ G+    P     L  T++        + YA+++   +
Sbjct: 24  LQFCASSKHKL--KQIHAFSIRHGVSLNNPDMGKHLIFTIVSLSAP---MSYAYNVFTVI 78

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
              +  +W +I+  Y +++ P     +F   + +  ++PD   +  L+KA       R G
Sbjct: 79  HNPNVFTWNTIIRGYAESDNPSPAF-LFYRQMVVSCVEPDTHTYPFLLKAISKSLNVREG 137

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           + +H+  + + F     V++SL+ +YA CG   +A  VF+ +K ++ V+W +M++ +A +
Sbjct: 138 EAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAYKVFELMKERDLVAWNSMINGFALN 197

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           GR  +A+ +F                                EM  EGV+  D   + S+
Sbjct: 198 GRPNEALTLFR-------------------------------EMSVEGVE-PDGFTVVSL 225

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + A A    LELG+++H  ++ +G      ++N+++D+YAKC  I  A+ +F  M  ++ 
Sbjct: 226 LSASAELGALELGRRVHVYLLKVGLSKNSHVTNSLLDLYAKCGAIREAQRVFSEMSERNA 285

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           VSWTS+IVG A +G  EE L L+ EM   G+ P+E+TFVG++YACSH G++ +G + F+ 
Sbjct: 286 VSWTSLIVGLAVNGFGEEALELFKEMEGQGLVPSEITFVGVLYACSHCGMLDEGFEYFRR 345

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           M E+ GI P ++HY C++DLLSR+G + +A   I+ MP +P+   W  LL AC  H +  
Sbjct: 346 MKEECGIIPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVIWRTLLGACTIHGHLG 405

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +G    +HLL+L+P+    Y+LLSN+YAS   W  V  +R+ M    VKK PGYS +E G
Sbjct: 406 LGEIARSHLLNLEPKHSGDYVLLSNLYASERRWSDVQVIRRSMLKDGVKKTPGYSLVELG 465

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
              + F  G+ SHP   +++ LL ++   +K  GYVP T++VL D+E++EKE+ L +HSE
Sbjct: 466 NRVYEFTMGDRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEEEEKEQALSYHSE 525

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           ++A+A+ LL + PGT +RV+KNLRVC DCH+ +K+I++I  REIV+RD +R+HHF+ G C
Sbjct: 526 KVAIAFMLLNTPPGTPIRVMKNLRVCADCHMAIKLIAKIYDREIVIRDRSRFHHFRGGSC 585

Query: 605 SCNDFW 610
           SC D+W
Sbjct: 586 SCKDYW 591


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/605 (36%), Positives = 332/605 (54%), Gaps = 34/605 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   L+ C   +     K LHAQ   LG+     L   L+  Y   + +  A +L +++P
Sbjct: 50  YTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIP 109

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +++   W  ++  Y         I ++  ML    L+PD+F    ++KAC +L A   G+
Sbjct: 110 KQNLFLWNVLIRGYAWNGPHDNAIILYHKMLDYG-LRPDNFTLPFVLKACSALSAIGEGR 168

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            +H   + S +  D  V ++L+DMYAKCG                               
Sbjct: 169 SIHEYVIKSGWERDLFVGAALIDMYAKCGCV----------------------------- 199

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
              DA  +F++  VR+  LW ++++   Q+ +  ++     EM   GV   +   L +++
Sbjct: 200 --MDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEA-TLVTVI 256

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            + A+ A L  G++IHG     G++S   +  A++DMYAKC  +  A  +F R+R K VV
Sbjct: 257 SSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERLREKRVV 316

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SW +II G A HG A   L L+D+M     +P+ +TFVG++ ACS   L+ +GR L+  M
Sbjct: 317 SWNAIITGYAMHGLAVGALDLFDKMRKED-RPDHITFVGVLAACSRGRLLDEGRALYNLM 375

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
           + DYGITP++QHYTC++DLL   G LDEA +LI+ M  +PD   W ALL++CK H N E+
Sbjct: 376 VRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKIHGNVEL 435

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
                  L+ L+P+D  +Y++L+N+YA +  W+ V K+R++M    +KK    S+IE   
Sbjct: 436 AELALEKLIELEPDDSGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIACSWIEVKN 495

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             + F AG+ SH   D I+  L  L+  M   GY PDT SV HD+E+ EK   +  HSER
Sbjct: 496 KVYAFLAGDVSHSNSDAIYAELKRLEGLMHEAGYAPDTGSVFHDVEEDEKTSMVCSHSER 555

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+A+GL+ + PGT L + KNLR+C DCH+ +K IS+I +REI VRD  RYH FK G CS
Sbjct: 556 LAIAFGLISTSPGTRLLITKNLRICEDCHVAIKFISKIMEREITVRDVNRYHSFKHGMCS 615

Query: 606 CNDFW 610
           C D W
Sbjct: 616 CGDHW 620



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 173/377 (45%), Gaps = 40/377 (10%)

Query: 97  ALDKLQPD---HFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC 153
           ++D   P    H+ + SL+++C    A   GKQ+HA F       +  + + LV +YA  
Sbjct: 36  SVDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYHLGIAYNQDLATKLVHLYAVS 95

Query: 154 GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLV 213
               NAR +FD I  +N   W  ++  YA +G   +A+ ++ +           L  GL 
Sbjct: 96  NSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIILYHK----------MLDYGLR 145

Query: 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
                                  D   L  ++ AC+  + +  G+ IH  VI  G+E  L
Sbjct: 146 P----------------------DNFTLPFVLKACSALSAIGEGRSIHEYVIKSGWERDL 183

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
           F+  A++DMYAKC  ++ A  +F ++  +D V W S++   AQ+G  +E+++L  EM + 
Sbjct: 184 FVGAALIDMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAAN 243

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
           GV+P E T V +I + + V  +  GR++       +G   + +  T L+D+ ++ G +  
Sbjct: 244 GVRPTEATLVTVISSSADVACLPYGREI-HGFGWRHGFQSNDKVKTALIDMYAKCGSVKV 302

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453
           A  L + +  E    +W A+++    H    +     +    ++ ED   +I    V A+
Sbjct: 303 ALALFERLR-EKRVVSWNAIITGYAMH---GLAVGALDLFDKMRKEDRPDHITFVGVLAA 358

Query: 454 AAMWQHVSKVRKLMSVM 470
            +  + + + R L ++M
Sbjct: 359 CSRGRLLDEGRALYNLM 375


>gi|15217508|ref|NP_172412.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806401|sp|Q56XI1.2|PPR25_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09410
 gi|3482916|gb|AAC33201.1| Hypothetical protein [Arabidopsis thaliana]
 gi|91805759|gb|ABE65608.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332190317|gb|AEE28438.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 705

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/627 (35%), Positives = 350/627 (55%), Gaps = 62/627 (9%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN-----------LPQKTIS 90
           N L+  Y K   +  A  + + MP+R+ VSW +++  Y               +P+K   
Sbjct: 83  NGLVSGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKV 142

Query: 91  IFSTML-------------ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
            ++ ML              L ++ PD     ++ +     G  + G+   A  +     
Sbjct: 143 SWTVMLIGFLQDGRIDDACKLYEMIPDK---DNIARTSMIHGLCKEGRVDEAREIFDEMS 199

Query: 138 DDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           +  V+  +++V  Y +    ++AR +FD +  K  VSWT+ML  Y ++GR +DA E+FE 
Sbjct: 200 ERSVITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEV 259

Query: 197 APVRNLFLWTALVSGLVQ-----------------------------SRN--EIDAFYSF 225
            PV+ +    A++SGL Q                              RN  E++A   F
Sbjct: 260 MPVKPVIACNAMISGLGQKGEIAKARRVFDSMKERNDASWQTVIKIHERNGFELEALDLF 319

Query: 226 IEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK 285
           I M+++GV    P ++S I+  CA+ A L  GKQ+H  ++   ++  +++++ ++ MY K
Sbjct: 320 ILMQKQGVRPTFPTLIS-ILSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIK 378

Query: 286 CSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEM-VSAGVKPNEVTFVG 344
           C +++ +K IF R   KD++ W SII G A HG  EE L ++ EM +S   KPNEVTFV 
Sbjct: 379 CGELVKSKLIFDRFPSKDIIMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVA 438

Query: 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE 404
            + ACS+ G+V +G K+++SM   +G+ P   HY C++D+L R+G  +EA  +I +M  E
Sbjct: 439 TLSACSYAGMVEEGLKIYESMESVFGVKPITAHYACMVDMLGRAGRFNEAMEMIDSMTVE 498

Query: 405 PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVR 464
           PD   W +LL AC+ H   ++    A  L+ ++PE+  +YILLSN+YAS   W  V+++R
Sbjct: 499 PDAAVWGSLLGACRTHSQLDVAEFCAKKLIEIEPENSGTYILLSNMYASQGRWADVAELR 558

Query: 465 KLMSVMEVKKEPGYSYIEFGKGSHIFY-AGETSHPLKDEIFELLTELDAEMKRRGYVPDT 523
           KLM    V+K PG S+ E     H F   G  SHP ++ I ++L ELD  ++  GY PD 
Sbjct: 559 KLMKTRLVRKSPGCSWTEVENKVHAFTRGGINSHPEQESILKILDELDGLLREAGYNPDC 618

Query: 524 SSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRI 583
           S  LHD++++EK   L +HSERLAVAY LLK   G  +RV+KNLRVC DCH  +K+IS++
Sbjct: 619 SYALHDVDEEEKVNSLKYHSERLAVAYALLKLSEGIPIRVMKNLRVCSDCHTAIKIISKV 678

Query: 584 TKREIVVRDATRYHHFKDGKCSCNDFW 610
            +REI++RDA R+HHF++G+CSC D+W
Sbjct: 679 KEREIILRDANRFHHFRNGECSCKDYW 705



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 152/345 (44%), Gaps = 45/345 (13%)

Query: 121 TRLGKQVHACFVLSPFCDDDVVKS--SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAML 178
           +R+GK +H    L   CD   + S  S+V  Y    +P +AR +FD +  +N +SW  ++
Sbjct: 28  SRIGK-IHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNIISWNGLV 86

Query: 179 SAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS---------------RNEIDAFY 223
           S Y ++G   +A ++F+  P RN+  WTALV G V +               +N++    
Sbjct: 87  SGYMKNGEIDEARKVFDLMPERNVVSWTALVKGYVHNGKVDVAESLFWKMPEKNKVSWTV 146

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL-----------VIALGYESC 272
             I   ++G  I D   L  ++    N A   +   IHGL           +     E  
Sbjct: 147 MLIGFLQDG-RIDDACKLYEMIPDKDNIARTSM---IHGLCKEGRVDEAREIFDEMSERS 202

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           +     +V  Y + + +  A+ IF  M  K  VSWTS+++G  Q+G+ E+   L++ M  
Sbjct: 203 VITWTTMVTGYGQNNRVDDARKIFDVMPEKTEVSWTSMLMGYVQNGRIEDAEELFEVM-- 260

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
             VKP  +    +I      G + K R++F SM E    +     +  ++ +  R+G   
Sbjct: 261 -PVKP-VIACNAMISGLGQKGEIAKARRVFDSMKERNDAS-----WQTVIKIHERNGFEL 313

Query: 393 EAENLIKAMP---FEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           EA +L   M      P  PT  ++LS C    +   G +V   L+
Sbjct: 314 EALDLFILMQKQGVRPTFPTLISILSVCASLASLHHGKQVHAQLV 358



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 8/176 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VCA        K +HAQ+++        + + L+  Y KC  +  +  + +  P +D 
Sbjct: 338 LSVCASLASLHHGKQVHAQLVRCQFDVDVYVASVLMTMYIKCGELVKSKLIFDRFPSKDI 397

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH- 128
           + W SI++ Y    L ++ + +F  M      +P+   F + + AC   G    G +++ 
Sbjct: 398 IMWNSIISGYASHGLGEEALKVFCEMPLSGSTKPNEVTFVATLSACSYAGMVEEGLKIYE 457

Query: 129 ---ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
              + F + P        + +VDM  + G  N A  + DS+ ++ ++  W ++L A
Sbjct: 458 SMESVFGVKPIT---AHYACMVDMLGRAGRFNEAMEMIDSMTVEPDAAVWGSLLGA 510



 Score = 46.2 bits (108), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 10/139 (7%)

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
           +N  +   ++   I  A+ +F     K + SW S++ G   +    +   L+DEM    +
Sbjct: 20  ANVRITHLSRIGKIHEARKLFDSCDSKSISSWNSMVAGYFANLMPRDARKLFDEMPDRNI 79

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
               +++ GL+      G + + RK+F  M E   ++     +T L+     +G +D AE
Sbjct: 80  ----ISWNGLVSGYMKNGEIDEARKVFDLMPERNVVS-----WTALVKGYVHNGKVDVAE 130

Query: 396 NLIKAMPFEPDEPTWAALL 414
           +L   MP E ++ +W  +L
Sbjct: 131 SLFWKMP-EKNKVSWTVML 148


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 222/591 (37%), Positives = 342/591 (57%), Gaps = 38/591 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H+ +IK        + N L+D Y K D V  A  L +EMP++D VS+  I++ Y   
Sbjct: 230 QQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWD 289

Query: 83  NLPQKTISIFSTM--LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
              +    +F  +   A D+ Q   F FA+++    +     +G+Q+HA  +++    + 
Sbjct: 290 GKHKYAFDLFRELQFTAFDRKQ---FPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEI 346

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           +V +SLVDMYAKCG                               + ++A  IF     R
Sbjct: 347 LVGNSLVDMYAKCG-------------------------------KFEEAEMIFTNLTHR 375

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           +   WTA++S  VQ     +    F +MR+  V I D    +S++ A A+ A L LGKQ+
Sbjct: 376 SAVPWTAMISAYVQKGFYEEGLQLFNKMRQASV-IADQATFASLLRASASIASLSLGKQL 434

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H  +I  G+ S +F  +A++D+YAKC  I  A   F  M  +++VSW ++I   AQ+G+A
Sbjct: 435 HSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEA 494

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           E TL  + EMV +G++P+ V+F+G++ ACSH GLV +G   F SM + Y + P  +HY  
Sbjct: 495 EATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYAS 554

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP-E 439
           ++D+L RSG  +EAE L+  MP +PDE  W+++L+AC+ H+N E+  R A+ L +++   
Sbjct: 555 VVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELR 614

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           D + Y+ +SN+YA+A  W++VSKV K M    VKK P YS++E    +H+F A +  HP 
Sbjct: 615 DAAPYVNMSNIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWVEIKHETHMFSANDRCHPQ 674

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
            +EI + +  L   M+  GY PDTS  LH+ ++K K   L +HSERLA+A+ L+ +  G+
Sbjct: 675 IEEIRKKIDMLTKTMEELGYKPDTSCALHNEDEKFKVESLKYHSERLAIAFALISTPEGS 734

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            + V+KNLR C DCH  +K+IS+I  REI VRD+TR+HHF+DG CSC DFW
Sbjct: 735 PILVMKNLRACIDCHAAIKVISKIVGREITVRDSTRFHHFRDGFCSCGDFW 785



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/445 (24%), Positives = 197/445 (44%), Gaps = 72/445 (16%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L  C  H++   +  +  QIIKLG      + NTL+D+Y K + +  A  L +EMP
Sbjct: 147 FVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMP 206

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +                                     D F FA+++ A   L    LG+
Sbjct: 207 E------------------------------------IDSFTFAAVLCANIGLDDIVLGQ 230

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q+H+  + + F  +  V ++L+D Y+K     +AR +FD +  ++ VS+  ++S YA  G
Sbjct: 231 QIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDG 290

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
           + K A ++F +                            F    R+          ++++
Sbjct: 291 KHKYAFDLFRE--------------------------LQFTAFDRK------QFPFATML 318

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
              +N    E+G+QIH   I    +S + + N++VDMYAKC     A+ IF  +  +  V
Sbjct: 319 SIASNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAV 378

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
            WT++I    Q G  EE L L+++M  A V  ++ TF  L+ A + +  +  G++L  S 
Sbjct: 379 PWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQL-HSF 437

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
           I   G   ++   + LLD+ ++ G + +A    + MP + +  +W A++SA   +   E 
Sbjct: 438 IIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEMP-DRNIVSWNAMISAYAQNGEAEA 496

Query: 426 GTRVANHLL--SLKPEDPSSYILLS 448
             +    ++   L+P+  S   +LS
Sbjct: 497 TLKSFKEMVLSGLQPDSVSFLGVLS 521



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 139/301 (46%), Gaps = 20/301 (6%)

Query: 138 DDDVVKSSL-VDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           D D  +S+  V  + K G  + AR +F+ +  KN+VS   M+S Y +SG   +A ++F+ 
Sbjct: 44  DPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDG 103

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
              R    WT L+ G  Q     +AF  F++M+R G +  D +   +++  C    +   
Sbjct: 104 MVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTE-PDYVTFVTLLSGCNGHEMGNQ 162

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
             Q+   +I LGY+S L + N +VD Y K + +  A  +F  M   D  ++ +++     
Sbjct: 163 ITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANI- 221

Query: 317 HGQAEETLALYDEMVSAGVKPNEV--TFVG---LIYACSHVGLVGKGRKLFKSMIEDYGI 371
                + + L  ++ S  +K N V   FV    L +   H  ++   RKLF  M E  G+
Sbjct: 222 ---GLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVI-DARKLFDEMPEQDGV 277

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTR 428
           +     Y  ++   +  G    A +L + +    F+  +  +A +LS   +  + EMG +
Sbjct: 278 S-----YNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQ 332

Query: 429 V 429
           +
Sbjct: 333 I 333



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 143/336 (42%), Gaps = 50/336 (14%)

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ-- 196
           + V  + ++  Y K G    AR +FD +  + +V+WT ++  Y++  + K+A E+F Q  
Sbjct: 77  NTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQ 136

Query: 197 --APVRNLFLWTALVSG-------------------------------LVQS---RNEID 220
                 +   +  L+SG                               LV S    N +D
Sbjct: 137 RCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLD 196

Query: 221 -AFYSFIEMRREGVDIVDPLVLSSIVGACANFAV--LELGKQIHGLVIALGYESCLFISN 277
            A   F EM       +D    ++++  CAN  +  + LG+QIH  VI   +   +F+SN
Sbjct: 197 LACQLFKEMPE-----IDSFTFAAVL--CANIGLDDIVLGQQIHSFVIKTNFVWNVFVSN 249

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           A++D Y+K   +I A+ +F  M  +D VS+  II G A  G+ +    L+ E+       
Sbjct: 250 ALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDR 309

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
            +  F  ++   S+      GR++    I     +  L     L+D+ ++ G  +EAE +
Sbjct: 310 KQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVG-NSLVDMYAKCGKFEEAEMI 368

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
              +      P W A++SA       E G ++ N +
Sbjct: 369 FTNLTHRSAVP-WTAMISAYVQKGFYEEGLQLFNKM 403



 Score = 45.4 bits (106), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 68/186 (36%), Gaps = 43/186 (23%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L +   I   ++  G++     SN  V  + K  ++  A+ +F +M  K+ VS   +I G
Sbjct: 28  LNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISG 87

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
             + G                                    +G+ RKLF  M+E   +T 
Sbjct: 88  YVKSGN-----------------------------------LGEARKLFDGMVERTAVT- 111

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMP---FEPDEPTWAALLSACKHHRNTEMGTRVA 430
               +T L+   S+     EA  L   M     EPD  T+  LLS C  H      T+V 
Sbjct: 112 ----WTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQ 167

Query: 431 NHLLSL 436
             ++ L
Sbjct: 168 TQIIKL 173


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 215/640 (33%), Positives = 350/640 (54%), Gaps = 52/640 (8%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L+ C +       K +H  + + GL     L N LI  Y K   ++ A  + + M  R+ 
Sbjct: 782  LQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNT 841

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPD----------HFV------------ 107
             SW S++++Y          S+F  + + D ++PD          HF+            
Sbjct: 842  SSWNSMISSYAALGFLNDAWSLFYELESSD-MKPDIVTWNCLLSGHFLHGYKEEVLNILQ 900

Query: 108  -------------FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
                           S+++A   LG   +GK+ H   + + F  D  V +SL+DMY K  
Sbjct: 901  RMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNH 960

Query: 155  LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR----NLFLWTALVS 210
               +A+AVFD++K +N  +W +++S Y+  G  +DA+ +  Q        +L  W  ++S
Sbjct: 961  SLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMIS 1020

Query: 211  GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE 270
            G         AF            + +   ++ ++ ACA+ ++L+ GK+IH L I  G+ 
Sbjct: 1021 GYAMWGCARKAF------------MPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFI 1068

Query: 271  SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEM 330
              +F++ A++DMY+K S +  A  +F R++ K + SW  +I+G A  G  +E +++++EM
Sbjct: 1069 EDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEM 1128

Query: 331  VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH 390
               GV P+ +TF  L+ AC + GL+G+G K F SMI DY I P L+HY C++DLL R+G+
Sbjct: 1129 QKVGVGPDAITFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGY 1188

Query: 391  LDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNV 450
            LDEA +LI  MP +PD   W ALL +C+ H+N       A +L  L+P + ++YIL+ N+
Sbjct: 1189 LDEAWDLIHTMPLKPDATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNL 1248

Query: 451  YASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTEL 510
            Y+    W+ +  +R+LM    V+    +S+I+  +  H+F + E  HP   +I+  L +L
Sbjct: 1249 YSIFNRWEDMDHLRELMGAAGVRNRQVWSWIQINQRVHVFSSDEKPHPDAGKIYFELYQL 1308

Query: 511  DAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVC 570
             +EMK+ GYVPD + V  +M++ EK++ L  H+E+LA+ YGL+K   G  +RV+KN R+C
Sbjct: 1309 VSEMKKLGYVPDVNCVYQNMDEVEKQKILLSHTEKLAITYGLIKMKAGEPIRVIKNTRIC 1368

Query: 571  GDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             DCH   K IS +  RE+ +RD  R+HHF++GKCSCNDFW
Sbjct: 1369 SDCHSAAKYISLVKARELFLRDGVRFHHFREGKCSCNDFW 1408



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 121/473 (25%), Positives = 218/473 (46%), Gaps = 67/473 (14%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L+ C R         +H  +IK G      L   L++ YG+C  ++ A+ +  EMP  + 
Sbjct: 681  LKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEA 740

Query: 70   VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            + W   +    Q+   QK + +F  M     L+ +      +++ACG +GA    KQ+H 
Sbjct: 741  LLWNEAIILNLQSEKLQKGVELFRKM-QFSFLKAETATIVRVLQACGKMGALNAAKQIHG 799

Query: 130  CFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
             +V     D DV + + L+ MY+K G    AR VFDS++ +N+ SW +M+S+YA  G   
Sbjct: 800  -YVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLN 858

Query: 189  DAMEIF---EQAPVR-NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
            DA  +F   E + ++ ++  W  L+SG      + +       M+ EG    +   ++S+
Sbjct: 859  DAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFK-PNSSSMTSV 917

Query: 245  VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
            + A +    L +GK+ HG V+  G++  +++  +++DMY K   + +A+ +F  M+ +++
Sbjct: 918  LQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNI 977

Query: 305  VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI------------------ 346
             +W S++ G +  G  E+ L L ++M   G+KP+ VT+ G+I                  
Sbjct: 978  FAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSA 1037

Query: 347  ------YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE----- 395
                   AC+ + L+ KG+++    I + G    +   T L+D+ S+S  L  A      
Sbjct: 1038 SITCLLRACASLSLLQKGKEIHCLSIRN-GFIEDVFVATALIDMYSKSSSLKNAHKVFRR 1096

Query: 396  -----------------------------NLIKAMPFEPDEPTWAALLSACKH 419
                                         N ++ +   PD  T+ ALLSACK+
Sbjct: 1097 IQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKN 1149



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/391 (20%), Positives = 150/391 (38%), Gaps = 75/391 (19%)

Query: 104  DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
            D  V++  +K C  +    LG ++H C +   F  D  ++ +L++ Y +C     A  VF
Sbjct: 673  DSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVF 732

Query: 164  DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
              +    ++ W   +    +S + +  +E+F +                          +
Sbjct: 733  HEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQ------------------------F 768

Query: 224  SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            SF  ++ E   IV       ++ AC     L   KQIHG V   G +S + + N ++ MY
Sbjct: 769  SF--LKAETATIV------RVLQACGKMGALNAAKQIHGYVFRFGLDSDVSLCNPLISMY 820

Query: 284  AKCSDIIAAKDIFGRMRRK-----------------------------------DVVSWT 308
            +K   +  A+ +F  M  +                                   D+V+W 
Sbjct: 821  SKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWN 880

Query: 309  SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
             ++ G   HG  EE L +   M   G KPN  +   ++ A S +G +  G++    ++ +
Sbjct: 881  CLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRN 940

Query: 369  YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
             G    +   T L+D+  ++  L  A+ +   M    +   W +L+S        E   R
Sbjct: 941  -GFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMK-NRNIFAWNSLVSGYSFKGMFEDALR 998

Query: 429  VANHL--LSLKPEDPSSYILLSNVYASAAMW 457
            + N +    +KP+     +  + + +  AMW
Sbjct: 999  LLNQMEKEGIKPD----LVTWNGMISGYAMW 1025



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 64/310 (20%), Positives = 134/310 (43%), Gaps = 12/310 (3%)

Query: 116 GSLGATRLGKQ-----VHACFVLSPFCDDDVVKSSLVDMY---AKCGLPNNARAVFDSIK 167
           G++  TR+ +      + A  V SP        S+ VD++     CG+      +    K
Sbjct: 544 GAVSNTRMSRAMEVLIIKALVVDSPSRASTGAISAGVDVFRFNTTCGMLGALVMIKLPQK 603

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS-FI 226
                +   ++S+Y   G    A  +F     RN   W + V     S   +      F 
Sbjct: 604 WNPDAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFK 663

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           E+  +GV + D  V S  +  C     + LG +IHG +I  G++  +++  A+++ Y +C
Sbjct: 664 ELHGKGV-VFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRC 722

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             +  A  +F  M   + + W   I+   Q  + ++ + L+ +M  + +K    T V ++
Sbjct: 723 WGLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVL 782

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            AC  +G +   +++   +   +G+   +     L+ + S++G L+ A  +  +M    +
Sbjct: 783 QACGKMGALNAAKQIHGYVFR-FGLDSDVSLCNPLISMYSKNGKLELARRVFDSME-NRN 840

Query: 407 EPTWAALLSA 416
             +W +++S+
Sbjct: 841 TSSWNSMISS 850


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  415 bits (1067), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/590 (37%), Positives = 331/590 (56%), Gaps = 36/590 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H QI+K        +   L+  Y +   +  A  +  EMP+ D V W+ ++  + Q 
Sbjct: 267 KGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQN 326

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + +F  M     + P+ F  +S++  C     + LG+Q+H   V   F  D  V
Sbjct: 327 GFCNEAVDLFIRMREA-FVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDLDIYV 385

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+D+YAKC   + A  +F  +  KN VSW  ++  Y   G    A  +F +A     
Sbjct: 386 SNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREAL---- 441

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                        RN++                V  +  SS +GACA+ A ++LG Q+HG
Sbjct: 442 -------------RNQVS---------------VTEVTFSSALGACASLASMDLGVQVHG 473

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L I       + +SN+++DMYAKC DI  A+ +F  M   DV SW ++I G + HG   +
Sbjct: 474 LAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQ 533

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L + D M     KPN +TF+G++  CS+ GL+ +G++ F+SMI D+GI P L+HYTC++
Sbjct: 534 ALRILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMV 593

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
            LL RSG LD+A  LI+ +P+EP    W A+LSA  +  N E   R A  +L + P+D +
Sbjct: 594 RLLGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEA 653

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y+L+SN+YA A  W +V+ +RK M  M VKKEPG S+IE     H F  G + HP    
Sbjct: 654 TYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKL 713

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I  +L  L+ +  R GYVPD ++VL DM+ +EK+++L+ HSERLA+AYGL++ +P +  R
Sbjct: 714 INGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVR-MPSSRNR 772

Query: 563 VV--KNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++  KNLR+C DCH  MK+IS I +R++V+RD  R+HHF  G CSC D W
Sbjct: 773 ILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGDHW 822



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 190/401 (47%), Gaps = 45/401 (11%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LH+ I+KLG      +   LI+AY  C  V  A  + E +  +D V WA I++ Y +   
Sbjct: 168 LHSPIVKLGYDSNAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGY 227

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA-----CFVLSPFCDD 139
            + ++ + S M  +    P+++ F + +KA   LGA    K VH      C+VL P    
Sbjct: 228 FEDSLKLLSCM-RMAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDP---- 282

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             V   L+ +Y + G  ++A  VF+ +   + V W+ M++ + ++G   +A+++      
Sbjct: 283 -RVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDL------ 335

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                    FI M RE   + +   LSSI+  CA      LG+Q
Sbjct: 336 -------------------------FIRM-REAFVVPNEFTLSSILNGCAIGKCSGLGEQ 369

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           +HGLV+ +G++  +++SNA++D+YAKC  +  A  +F  +  K+ VSW ++IVG    G+
Sbjct: 370 LHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGE 429

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
             +  +++ E +   V   EVTF   + AC+ +  +  G ++    I+       +    
Sbjct: 430 GGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNN-AKKVAVSN 488

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            L+D+ ++ G +  A+++   M    D  +W AL+S    H
Sbjct: 489 SLIDMYAKCGDIKFAQSVFNEME-TIDVASWNALISGYSTH 528



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 95/186 (51%), Gaps = 1/186 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA  + +   + LH  ++K+G      + N LID Y KC+ +  A  L  E+  ++ 
Sbjct: 355 LNGCAIGKCSGLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNE 414

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++  Y       K  S+F   L  +++      F+S + AC SL +  LG QVH 
Sbjct: 415 VSWNTVIVGYENLGEGGKAFSMFREALR-NQVSVTEVTFSSALGACASLASMDLGVQVHG 473

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +       V +SL+DMYAKCG    A++VF+ ++  +  SW A++S Y+  G  + 
Sbjct: 474 LAIKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQ 533

Query: 190 AMEIFE 195
           A+ I +
Sbjct: 534 ALRILD 539



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 128/265 (48%), Gaps = 13/265 (4%)

Query: 156 PNNARAVFDSIKLKNSV----SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSG 211
           P +A+A+   I  K S     +   +L+AY ++G  KDA+ +F++ P RN   +  L  G
Sbjct: 65  PISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQG 124

Query: 212 LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271
                   D    +  + REG ++ +P V +S +    +    E+   +H  ++ LGY+S
Sbjct: 125 YACQ----DPIGLYSRLHREGHEL-NPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDS 179

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
             F+  A+++ Y+ C  + +A+ +F  +  KD+V W  I+    ++G  E++L L   M 
Sbjct: 180 NAFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMR 239

Query: 332 SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED-YGITPSLQHYTCLLDLLSRSGH 390
            AG  PN  TF   + A   +G     + +   +++  Y + P +     LL L ++ G 
Sbjct: 240 MAGFMPNNYTFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVG--VGLLQLYTQLGD 297

Query: 391 LDEAENLIKAMPFEPDEPTWAALLS 415
           + +A  +   MP + D   W+ +++
Sbjct: 298 MSDAFKVFNEMP-KNDVVPWSFMIA 321


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/573 (39%), Positives = 329/573 (57%), Gaps = 36/573 (6%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLA-- 97
           L   L+D Y KC  + YA  + + MP R+ V+W++++  +   +   +   +F  MLA  
Sbjct: 160 LGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG 219

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
           L  L P     AS ++AC SL   R+G+Q+HA    S    D    +SL+ MYAK     
Sbjct: 220 LCFLSPTSI--ASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK----- 272

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
                                     +G    A+ +F++  V++   ++ALVSG VQ+  
Sbjct: 273 --------------------------AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGR 306

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             +AF  F +M+   V+  D   + S++ AC++ A L+ G+  HG VI  G  S   I N
Sbjct: 307 AEEAFLVFKKMQACNVE-PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICN 365

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           A++DMYAKC  I  ++ +F  M  +D+VSW ++I G   HG  +E  AL+ EM + G  P
Sbjct: 366 ALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP 425

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           + VTF+ L+ ACSH GLV +G+  F  M   YG+TP ++HY C++DLLSR G LDEA   
Sbjct: 426 DGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF 485

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           I++MP   D   W ALL AC+ ++N ++G +V+  +  L PE   +++LLSN+Y++A  +
Sbjct: 486 IQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRF 545

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
              ++VR +  V   KK PG S+IE     H F  G+ SHP   EI+  L  +   +K+ 
Sbjct: 546 DEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKL 605

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GY PDTS VL D+E++EKE+ L  HSE+LA+AYG+L       + V KNLRVCGDCH V+
Sbjct: 606 GYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVI 665

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K IS + +R I+VRDA R+HHFK+G+CSC DFW
Sbjct: 666 KHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 698



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 192/442 (43%), Gaps = 77/442 (17%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H   I  GL     +   L+D Y KC  +  A H+   MP RD V+W ++L  Y   
Sbjct: 30  RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHH 89

Query: 83  NLPQKTIS-IFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL-------- 133
            +    ++ + S  + + +L+P+     +L+      GA   G  VHA  +         
Sbjct: 90  GMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRN 149

Query: 134 --SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
             S   D  ++ ++L+DMYAKCG    AR VFD++  +N V+W+                
Sbjct: 150 SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS---------------- 193

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
                          AL+ G V       AF  F  M  +G+  + P  ++S + ACA+ 
Sbjct: 194 ---------------ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASL 238

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
             L +G+Q+H L+   G  + L   N+++ MYAK   I  A  +F  M  KD VS+++++
Sbjct: 239 DHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALV 298

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G  Q+G+AEE   ++ +M +  V+P+  T V LI ACSH+  +  GR    S+I   G+
Sbjct: 299 SGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GL 357

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMP----------------------------- 402
                    L+D+ ++ G +D +  +   MP                             
Sbjct: 358 ASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLE 417

Query: 403 -----FEPDEPTWAALLSACKH 419
                F PD  T+  LLSAC H
Sbjct: 418 MNNLGFPPDGVTFICLLSACSH 439



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 148/334 (44%), Gaps = 55/334 (16%)

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           ++ P+++ F   +KAC +L     G+ +H   + +    D  V ++L+DMY KC    +A
Sbjct: 5   RVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDA 64

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
             +F ++  ++ V+W AML+ YA  G    A                  V+ L+  + ++
Sbjct: 65  AHIFATMPARDLVAWNAMLAGYAHHGMYHHA------------------VAHLLSMQMQM 106

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL------ 273
                   +R     +V  L L +  GA A       G  +H   I     +CL      
Sbjct: 107 H------RLRPNASTLVALLPLLAQQGALAQ------GTSVHAYCI----RACLHPNRNS 150

Query: 274 --------FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA 325
                    +  A++DMYAKC  ++ A+ +F  M  ++ V+W+++I G     +  +   
Sbjct: 151 KSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFL 210

Query: 326 LYDEMVSAG---VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
           L+  M++ G   + P  +     + AC+ +  +  G +L  +++   G+   L     LL
Sbjct: 211 LFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQL-HALLAKSGVHADLTAGNSLL 267

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            + +++G +D+A  L   M  + D  +++AL+S 
Sbjct: 268 SMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSG 300


>gi|302791503|ref|XP_002977518.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
 gi|300154888|gb|EFJ21522.1| hypothetical protein SELMODRAFT_107192 [Selaginella moellendorffii]
          Length = 652

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 210/562 (37%), Positives = 340/562 (60%), Gaps = 15/562 (2%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           ++ A +  ++MP+RD V+W ++L A  +    +     F  M      + + F + SL+ 
Sbjct: 101 IEDAKYHFDQMPERDLVAWTAMLAANAERGQMENARETFDQMP-----ERNLFSWTSLLS 155

Query: 114 ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS 173
           A G  G  +   +V   F   P  +  V  ++++  Y+  G    A+  FDS+  ++ ++
Sbjct: 156 AYGRSGDVKAAGRV---FDSMPEWNL-VAWTAMLTGYSLSGDVVRAKRAFDSMPERDLIA 211

Query: 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR--- 230
           WTAMLSAYA +G  +   EIF++ P R+L  W  +V+ LV++    ++   F  M R   
Sbjct: 212 WTAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCA 271

Query: 231 --EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
             +G+   + +   +++ AC+    L  G++IH  V   G+++ L +SNA+V+ Y +C  
Sbjct: 272 LSKGM-TPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGA 330

Query: 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
           +  AK +F  MRR+DV+SW+S+I   AQ G+ +E + LY  M+S G  P+++ F+ +++A
Sbjct: 331 LGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDDIIFISVLFA 390

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           CS+ G+V      F+S++ D  + P+L+HY C++D+L R+G L +AE+L++ MPF P   
Sbjct: 391 CSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLMPFHPGPL 450

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
            +  +LSACK + + E G   A  +  L PE+ S YI L+N+Y++A   +  +++RKLM 
Sbjct: 451 LYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKDAARIRKLME 510

Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH 528
              +KK+PG S+IE     H F AG+  HP +DEI+  +  L  +MK  GY  DT  VL 
Sbjct: 511 ERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGYFQDTKVVLQ 570

Query: 529 DMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREI 588
           D+E+ EKE  L++HSE+LA+A+GL+ + PG  LR+VKNLRVC DCH   K+IS++T REI
Sbjct: 571 DVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKVISKVTGREI 630

Query: 589 VVRDATRYHHFKDGKCSCNDFW 610
           +VRD  R+HHF++G CSCND+W
Sbjct: 631 LVRDTNRFHHFQNGMCSCNDYW 652



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 129/263 (49%), Gaps = 37/263 (14%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTM---LAL 98
             ++ AY     ++Y   + + MP+RD +SWA+++ A  + +L +++  +F  M    AL
Sbjct: 213 TAMLSAYAFNGHLRYTREIFQRMPERDLISWATMVAALVENDLLEESKELFDRMPRHCAL 272

Query: 99  DK-LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
            K + P+   F +L+ AC  LGA   G+++HA      F  D VV ++LV+ Y +CG   
Sbjct: 273 SKGMTPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLVVSNALVNFYGRCGALG 332

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
           +A+ VFD ++ ++ +SW++M+SA+A+ GR  +AME++ +                     
Sbjct: 333 DAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHR--------------------- 371

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL-GKQIHGLVIALGYESCLFIS 276
                     M  EG  + D ++  S++ AC+N  V+E  G     +V     E  L   
Sbjct: 372 ----------MLSEGT-LPDDIIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHY 420

Query: 277 NAIVDMYAKCSDIIAAKDIFGRM 299
             +VD+  +   +  A+D+   M
Sbjct: 421 ACMVDVLGRAGKLRDAEDLLRLM 443



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 138/305 (45%), Gaps = 27/305 (8%)

Query: 122 RLGKQVHACFVLSPFCDDDVVKSS-LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
           RLG    A  +     D D      ++ +YA+ G  +NA+ VFD +   +  SWTA+LSA
Sbjct: 4   RLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTALLSA 63

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           +A SG  ++A  +F+    R+L  WT +++ L    N  DA Y F +M        D + 
Sbjct: 64  FALSGHHEEAKTLFDTMQERDLIAWTIMLTVLATFSNIEDAKYHFDQMPER-----DLVA 118

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
            ++++ A A    +E  ++    +     E  LF   +++  Y +  D+ AA  +F  M 
Sbjct: 119 WTAMLAANAERGQMENARETFDQMP----ERNLFSWTSLLSAYGRSGDVKAAGRVFDSMP 174

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
             ++V+WT+++ G +  G        +D M    +    + +  ++ A +  G +   R+
Sbjct: 175 EWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPERDL----IAWTAMLSAYAFNGHLRYTRE 230

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP--------FEPDEPTWAA 412
           +F+ M E       L  +  ++  L  +  L+E++ L   MP          P+  T+  
Sbjct: 231 IFQRMPE-----RDLISWATMVAALVENDLLEESKELFDRMPRHCALSKGMTPNRVTFIT 285

Query: 413 LLSAC 417
           LL AC
Sbjct: 286 LLDAC 290



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 127/268 (47%), Gaps = 19/268 (7%)

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           M+ + G    AR +FD+I  ++S SW  MLS YARSG   +A  +F++ P  +L  WTAL
Sbjct: 1   MFGRLGCVERARQIFDAIADRDSFSWGIMLSIYARSGDLSNAKGVFDRMPRWSLGSWTAL 60

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
           +S    S +  +A   F  M+       D +  + ++   A F+ +E  K     +    
Sbjct: 61  LSAFALSGHHEEAKTLFDTMQER-----DLIAWTIMLTVLATFSNIEDAKYHFDQMP--- 112

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
            E  L    A++   A+   +  A++ F +M  +++ SWTS++    + G  +    ++D
Sbjct: 113 -ERDLVAWTAMLAANAERGQMENARETFDQMPERNLFSWTSLLSAYGRSGDVKAAGRVFD 171

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
            M     + N V +  ++   S  G V + ++ F SM E       L  +T +L   + +
Sbjct: 172 SM----PEWNLVAWTAMLTGYSLSGDVVRAKRAFDSMPE-----RDLIAWTAMLSAYAFN 222

Query: 389 GHLDEAENLIKAMPFEPDEPTWAALLSA 416
           GHL     + + MP E D  +WA +++A
Sbjct: 223 GHLRYTREIFQRMP-ERDLISWATMVAA 249



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 54/97 (55%), Gaps = 1/97 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA + + G      + N L++ YG+C  +  A  + + M +RD +SW+S+++A+ Q 
Sbjct: 300 RKIHAAVAERGFDTDLVVSNALVNFYGRCGALGDAKIVFDGMRRRDVISWSSMISAFAQR 359

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
               + + ++  ML+   L PD  +F S++ AC + G
Sbjct: 360 GRVDEAMELYHRMLSEGTL-PDDIIFISVLFACSNSG 395


>gi|125599128|gb|EAZ38704.1| hypothetical protein OsJ_23104 [Oryza sativa Japonica Group]
          Length = 1280

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/530 (39%), Positives = 310/530 (58%), Gaps = 41/530 (7%)

Query: 85   PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            P+  + +    LAL    PD   +  L++AC  L A R G+ +HA    + F     V++
Sbjct: 788  PRVALELHRRRLAL----PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQN 843

Query: 145  SLVDMYAKCGLPNNARAVFDSIKL--KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            SLV +Y  CGL  +A  VFD + +  +N VSW +ML+++A +GR  + + +F        
Sbjct: 844  SLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVF-------- 895

Query: 203  FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIH 261
              W  L                       GVD   D   + S++ ACA F  L LG+++H
Sbjct: 896  --WEML-----------------------GVDFAPDGFTIVSVLTACAEFGALALGRRVH 930

Query: 262  GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQA 320
              V  +G      +SNA++D+YAKC  +  A+ IF  M   + VVSWTS+IVG A +G  
Sbjct: 931  VYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFG 990

Query: 321  EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
            +E L L+  M    + P E+T VG++YACSH GLV  G + F  M EDYGI+P ++H  C
Sbjct: 991  KEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGC 1050

Query: 381  LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
            ++DLL R+G ++EA + I  MP EP+   W  LL +C  H+  E+G      L+ L P  
Sbjct: 1051 MVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGH 1110

Query: 441  PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
               Y+LLSN+YA+  MW  V  +RK M    V+K PG+S +E     + F  G+ SHP  
Sbjct: 1111 SGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPES 1170

Query: 501  DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
            ++I+E+L E+   ++R GY+P TS+VL D+E++EKE  L +HSERLA+A+ LLKS+PG  
Sbjct: 1171 EQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIP 1230

Query: 561  LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +R++KNLR+CGDCH+   +IS++  REI+VRD +R+HHF+ G CSC D+W
Sbjct: 1231 IRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 1280



 Score =  121 bits (304), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 107/192 (55%), Gaps = 4/192 (2%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   ++ CAR       + LHA+  K G      + N+L+  YG C L + AH + +EMP
Sbjct: 807 YPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMP 866

Query: 66  --QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
              R+ VSW S+L ++     P + +++F  ML +D   PD F   S++ AC   GA  L
Sbjct: 867 VRGRNLVSWNSMLNSFAANGRPNEVLTVFWEMLGVD-FAPDGFTIVSVLTACAEFGALAL 925

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYA 182
           G++VH         ++  V ++L+D+YAKCG  N+AR +F+ + L +  VSWT+++   A
Sbjct: 926 GRRVHVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLA 985

Query: 183 RSGRKKDAMEIF 194
            +G  K+A+E+F
Sbjct: 986 ANGFGKEALELF 997


>gi|115470597|ref|NP_001058897.1| Os07g0150000 [Oryza sativa Japonica Group]
 gi|34393394|dbj|BAC82905.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610433|dbj|BAF20811.1| Os07g0150000 [Oryza sativa Japonica Group]
          Length = 592

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 211/530 (39%), Positives = 310/530 (58%), Gaps = 41/530 (7%)

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P+  + +    LAL    PD   +  L++AC  L A R G+ +HA    + F     V++
Sbjct: 100 PRVALELHRRRLAL----PDTHTYPPLIQACARLLALREGECLHAEAAKNGFVTLVFVQN 155

Query: 145 SLVDMYAKCGLPNNARAVFDS--IKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           SLV +Y  CGL  +A  VFD   ++ +N VSW +ML+++A +GR  + + +F        
Sbjct: 156 SLVHLYGACGLFESAHKVFDEMPVRGRNLVSWNSMLNSFAANGRPNEVLTVF-------- 207

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIH 261
             W  L                       GVD   D   + S++ ACA F  L LG+++H
Sbjct: 208 --WEML-----------------------GVDFAPDGFTIVSVLTACAEFGALALGRRVH 242

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQA 320
             V  +G      +SNA++D+YAKC  +  A+ IF  M   + VVSWTS+IVG A +G  
Sbjct: 243 VYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGFG 302

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           +E L L+  M    + P E+T VG++YACSH GLV  G + F  M EDYGI+P ++H  C
Sbjct: 303 KEALELFSLMEREKLVPTEITMVGVLYACSHCGLVDDGFRYFDRMKEDYGISPRIEHLGC 362

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DLL R+G ++EA + I  MP EP+   W  LL +C  H+  E+G      L+ L P  
Sbjct: 363 MVDLLGRAGRVEEAYDYIITMPLEPNAVVWRTLLGSCAMHKKLELGKVAWERLVELDPGH 422

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
              Y+LLSN+YA+  MW  V  +RK M    V+K PG+S +E     + F  G+ SHP  
Sbjct: 423 SGDYVLLSNLYAAVGMWADVHVLRKTMVKDRVRKNPGHSLVELRNSVYEFVMGDRSHPES 482

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
           ++I+E+L E+   ++R GY+P TS+VL D+E++EKE  L +HSERLA+A+ LLKS+PG  
Sbjct: 483 EQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKETALNYHSERLAIAFALLKSLPGIP 542

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +R++KNLR+CGDCH+   +IS++  REI+VRD +R+HHF+ G CSC D+W
Sbjct: 543 IRIIKNLRMCGDCHVAFNLISKVYDREIIVRDRSRFHHFQGGACSCKDYW 592



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 65/188 (34%), Positives = 106/188 (56%), Gaps = 4/188 (2%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP--QR 67
           ++ CAR       + LHA+  K G      + N+L+  YG C L + AH + +EMP   R
Sbjct: 123 IQACARLLALREGECLHAEAAKNGFVTLVFVQNSLVHLYGACGLFESAHKVFDEMPVRGR 182

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           + VSW S+L ++     P + +++F  ML +D   PD F   S++ AC   GA  LG++V
Sbjct: 183 NLVSWNSMLNSFAANGRPNEVLTVFWEMLGVD-FAPDGFTIVSVLTACAEFGALALGRRV 241

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARSGR 186
           H         ++  V ++L+D+YAKCG  N+AR +F+ + L +  VSWT+++   A +G 
Sbjct: 242 HVYVEKVGLVENSHVSNALIDLYAKCGSVNDARRIFEEMGLGRTVVSWTSLIVGLAANGF 301

Query: 187 KKDAMEIF 194
            K+A+E+F
Sbjct: 302 GKEALELF 309


>gi|224141409|ref|XP_002324065.1| predicted protein [Populus trichocarpa]
 gi|222867067|gb|EEF04198.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 212/588 (36%), Positives = 334/588 (56%), Gaps = 33/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +  H  ++K G   +  + N L+  Y KC +VQ A  +  E+P  D V++ SIL++  + 
Sbjct: 153 RQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVEN 212

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ + +  +M++ + ++ D   F +    C SL   RLG  VH   + S    D  V
Sbjct: 213 GYLREGLEVLRSMVS-ESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVECDAYV 271

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            S++++MY KCG    AR V                               F+    RN+
Sbjct: 272 SSAIINMYGKCGKSLMARGV-------------------------------FDGLQSRNV 300

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
            LWTA+++   Q+    +A   F +M +E V   +    + ++ ACA  +    G  +HG
Sbjct: 301 VLWTAVMASCFQNGCFEEALNLFSKMEQENVK-SNEFTYAVLLNACAGLSARRNGSLLHG 359

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
                G++  + + NA+++MYAK  DI AAK +F  M  +D+++W ++I G + HG  ++
Sbjct: 360 HSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKK 419

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L ++ +M++A   PN VTF G++ AC H+GLV +G      +++ +G+ P L+HYTC++
Sbjct: 420 ALLVFQDMLAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIV 479

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
            LLS++G L+EA N ++  P + D   W  LL+AC  H+N  +G  VA  +L + P D  
Sbjct: 480 SLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVG 539

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y LLSN+YA    W  V KVRKLM   ++KKEPG S+IE G  +HIF + +  HP   +
Sbjct: 540 TYTLLSNIYAKEKRWDGVVKVRKLMRDKKIKKEPGVSWIEIGNVTHIFTSEDNKHPDYGQ 599

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
            ++ + EL A +K  GY PD  +VLHD+E ++KE  L +HSE+LA+AYGLLK      + 
Sbjct: 600 TYQKVKELLAMIKPLGYTPDIGAVLHDVEDEQKEYYLSYHSEKLAIAYGLLKLPSEASIL 659

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V+KNLR+C DCH  +++IS++T R IVVRDA R+HHF+DG+CSC D+W
Sbjct: 660 VIKNLRICDDCHSAVRLISKVTNRVIVVRDANRFHHFRDGRCSCLDYW 707



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 113/244 (46%), Gaps = 36/244 (14%)

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG--LVIALGYESCLFISNAIVDMYAK 285
           +R   V    PL L  ++   A+   L++GK IH   +V +   E+ +   N++++ YAK
Sbjct: 19  LRPNAVSPSSPLDLIKLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAK 78

Query: 286 CSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVG 344
            + +  A ++F RM  ++VVSW++++ G   +G + + + L  +M+S G V PNE     
Sbjct: 79  VNQVSIAHNLFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAI 138

Query: 345 LIYACSHVGLVGKGRK----LFK--------------------SMIED----YGITP--S 374
            I +C   G V +GR+    L K                    S+++D    +   P   
Sbjct: 139 AISSCCDRGRVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVND 198

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEP---DEPTWAALLSACKHHRNTEMGTRVAN 431
           +  Y  +L  L  +G+L E   ++++M  E    D+ T+    S C   ++  +G  V  
Sbjct: 199 IVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHG 258

Query: 432 HLLS 435
            +L+
Sbjct: 259 KMLT 262



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 81/176 (46%), Gaps = 9/176 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA          LH    K G   +  + N LI+ Y K   ++ A  +  +M  RD 
Sbjct: 342 LNACAGLSARRNGSLLHGHSEKSGFKHHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDI 401

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
           ++W +++  ++   L +K + +F  MLA ++  P++  F  ++ ACG LG  + G     
Sbjct: 402 ITWNAMICGFSHHGLGKKALLVFQDMLAAEE-HPNYVTFTGVLSACGHLGLVQEGFYYLH 460

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
            +   F + P  +     + +V + +K G  N AR    +  +K + V+W  +L+A
Sbjct: 461 HLMKQFGVQPGLEH---YTCIVSLLSKTGQLNEARNFMRTAPVKWDVVAWRTLLNA 513


>gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 600

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 217/595 (36%), Positives = 334/595 (56%), Gaps = 40/595 (6%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDA---------YGKCDLVQYAHHLLEEMPQRDHVSWASI 75
           +HA I+K GL Q  PL  T   +         Y    L   +H      P  D   + ++
Sbjct: 37  IHAFILKTGL-QNNPLILTKFTSTSSNLNSIHYATSFLFPPSHTTSTPTPSYDAFLFNTL 95

Query: 76  LTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP 135
           + AY+Q    +    +F   +    + P+ F F  ++K C  +G+ RLGK VH C V   
Sbjct: 96  IRAYSQTRDSKSNSFLFYRTMLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCVVKFG 155

Query: 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
           F +D  V ++L+ MY  C L  +                               A ++F+
Sbjct: 156 FEEDVHVLNTLIHMY--CCLGEDGFEF---------------------------AEKVFD 186

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
            +P  +   W+A+++G V+      A   F EM+  GV   D + + S++ ACA+   LE
Sbjct: 187 DSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGV-CPDEITMVSVLSACADLGALE 245

Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
           LGK +   V        + + NA++DM+AKC ++  A  +F +M  + +VSWTS+I G A
Sbjct: 246 LGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLA 305

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
            HG+  + ++L+DEMV  G+ P++V F+G++ ACSH GLV KGR  F SM  ++ I P +
Sbjct: 306 MHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSMERNFSIVPKV 365

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
           +HY C++DLL R G + EA   ++ MPFEP++  W  +++AC      ++G  ++  L+ 
Sbjct: 366 EHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKLGESISKELIK 425

Query: 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGET 495
            +P   S+Y+LLSN+YA    W+  +KVR++M +  +KK PG + IE     + F AG+ 
Sbjct: 426 SEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNNEMYEFVAGDK 485

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKS 555
           SH    EI+E++ E+  E+K+ GYVP TS VL D+++++KE  L+ HSE+LA+A+ LL +
Sbjct: 486 SHDQYKEIYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLNT 545

Query: 556 VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            PGT +R+VKNLRVC DCH   K IS++  REIVVRD  R+HHFK+G CSC DFW
Sbjct: 546 PPGTSIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCRDFW 600



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 49/177 (27%), Positives = 93/177 (52%), Gaps = 5/177 (2%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAY---GKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           K +H  ++K G  +   + NTLI  Y   G+ D  ++A  + ++ P+ D V+W++++  +
Sbjct: 145 KCVHGCVVKFGFEEDVHVLNTLIHMYCCLGE-DGFEFAEKVFDDSPKMDTVTWSAMIAGF 203

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            +     + + +F  M  +  + PD     S++ AC  LGA  LGK V +          
Sbjct: 204 VRLGCSSRAVDLFREMQVMG-VCPDEITMVSVLSACADLGALELGKWVESYVEKKNIPKS 262

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             + ++L+DM+AKCG  + A  +F  +  +  VSWT++++  A  GR  DA+ +F++
Sbjct: 263 VELCNALIDMFAKCGNVDKAIKLFRQMDSRTIVSWTSVIAGLAMHGRGLDAVSLFDE 319


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  414 bits (1065), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/591 (34%), Positives = 333/591 (56%), Gaps = 34/591 (5%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
            ++ +HA II  GLH+   L   LI        + YA  L   +P  D   + S+L   +
Sbjct: 106 NLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTS 165

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           +      T+  +  ML     Q + + F S++KAC  L A RLGK++H+  ++  +  D 
Sbjct: 166 KFGFSIDTVLFYRRMLFSGAPQSN-YTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDM 224

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V+++L+ +YAK                               +   K A ++F+  P R
Sbjct: 225 YVQAALIALYAK-------------------------------ASDMKVAKKVFDAMPQR 253

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
            +  W +L+SG  Q+    ++   F  M   G    D   + S++ +C+    L+ G  +
Sbjct: 254 TIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQ-PDSATIVSLLSSCSQLGALDFGCWL 312

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H      G++  + +  ++++MY +C ++  A+++F  M+ ++VV+WT++I G   HG  
Sbjct: 313 HDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYG 372

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
            + + L+ EM + G +PN +TFV ++ AC+H GL+  GR++F SM E YG+ P ++H  C
Sbjct: 373 RQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVC 432

Query: 381 LLDLLSRSGHLDEAENLIKA-MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           ++D+  R+G L++A   IK  +P EP    W ++L AC+ HRN ++G +VA H+LS++PE
Sbjct: 433 MVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPE 492

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           +P  Y++LSN+YA A     V  VR +M+   +KK+ GYS IE  + +++F  G+ SHP 
Sbjct: 493 NPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQ 552

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
            + I+  L EL       GYVP   S++HD+E++E++  L +HSE+LA+A+GLLK+  G 
Sbjct: 553 TNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGE 612

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +R+VKNLR+C DCH  +K IS I  REI+VRD  R+HHFKDG CSC D+W
Sbjct: 613 TIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 663



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 167/371 (45%), Gaps = 51/371 (13%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ CA        K +H+ ++  G      +   LI  Y K   ++ A  + + MPQR  
Sbjct: 196 IKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTI 255

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           ++W S+++ Y+Q  LPQ++I +F  M+     QPD     SL+ +C  LGA   G  +H 
Sbjct: 256 IAWNSLISGYDQNGLPQESIGLFHLMME-SGFQPDSATIVSLLSSCSQLGALDFGCWLHD 314

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               + F  + V+ +SL++MY +CG  + AR VFDS+K +N V+WTAM+S Y   G  + 
Sbjct: 315 YADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQ 374

Query: 190 AMEIFEQ----APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR-----EGVD----IV 236
           AME+F +     P  N   + A++S    S    D    F  M+       GV+    +V
Sbjct: 375 AMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMV 434

Query: 237 D------------------------PLVLSSIVGACANFAVLELGKQIHGLVIALGYES- 271
           D                        P V +S++GAC      +LG ++   V+++  E+ 
Sbjct: 435 DMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENP 494

Query: 272 --CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV---------GTAQHGQA 320
              + +SN I  +  +   +   +++  R R K  V +++I +         G   H Q 
Sbjct: 495 GHYVMLSN-IYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQT 553

Query: 321 EETLALYDEMV 331
                  DE++
Sbjct: 554 NTIYRYLDELM 564


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 207/577 (35%), Positives = 339/577 (58%), Gaps = 10/577 (1%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQR----DHVSWASILTAYNQANLPQKTISIFSTMLA 97
           + L+  Y +   ++    +L EM +     + VSW  IL+ +N++   ++ + +F  M  
Sbjct: 186 SALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHH 245

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
           L    PD    +S++ + G      +G+Q+H   +      D  V S+++DMY K G   
Sbjct: 246 LG-FCPDQVTVSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVY 304

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF----EQAPVRNLFLWTALVSGLV 213
               +FD  ++  +    A ++  +R+G    A+E+F    EQ    N+  WT++++G  
Sbjct: 305 GIIKLFDEFEMMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCA 364

Query: 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
           Q+  +I+A   F EM+  GV   + + + S++ AC N A L  G+  HG  + +     +
Sbjct: 365 QNGKDIEALELFREMQVAGVK-PNRVTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDV 423

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
            + +A++DMYAKC  I  ++ +F  M  K++V W S++ G + HG+A+E +++++ ++  
Sbjct: 424 HVGSALIDMYAKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRT 483

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
            +KP+ ++F  L+ AC  VGL  +G K F  M E+YGI P L+HY+C+++LL R+G L E
Sbjct: 484 RLKPDFISFTSLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQE 543

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453
           A +LIK +PFEPD   W ALL++C+   N ++    A  L  L+PE+P +Y+L+SN+YA+
Sbjct: 544 AYDLIKEIPFEPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEPENPGTYVLMSNIYAA 603

Query: 454 AAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAE 513
             MW  V  +R  M  + +KK PG S+I+     +   A + SHP  D+I E + E+  E
Sbjct: 604 KGMWTEVDSIRNKMESLGLKKNPGCSWIQVKNKVYTLLACDKSHPQIDQITEKMDEISEE 663

Query: 514 MKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDC 573
           M++ G+ P+    L D+E++E+E+ L+ HSE+LAV +GLL +  GT L+V+KNLR+CGDC
Sbjct: 664 MRKSGHRPNLDFALQDVEEQEQEQMLWGHSEKLAVVFGLLNTPDGTPLQVIKNLRICGDC 723

Query: 574 HIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           H V+K IS    REI +RD  R+HHFKDG CSC DFW
Sbjct: 724 HAVIKFISSYAGREIFIRDTNRFHHFKDGICSCGDFW 760



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 135/464 (29%), Positives = 224/464 (48%), Gaps = 45/464 (9%)

Query: 26  HAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLP 85
           HA+I+K G    G +   LI +Y   +    A  +L+ +P     S++S++ A  +A L 
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLF 97

Query: 86  QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS 145
            ++I +FS M +   L PD  V  +L K C  L A + GKQ+H    +S    D  V+ S
Sbjct: 98  SQSIGVFSRMFS-HGLIPDTHVLPNLFKVCAELSAFKAGKQIHCVACVSGLDMDAFVQGS 156

Query: 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF---EQAPVR-N 201
           L  MY +CG   +AR VFD +  K+ V+ +A+L  YAR G  ++ + I    E++ +  N
Sbjct: 157 LFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSGIEPN 216

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           +  W  ++SG  +S    +A   F +M   G    D + +SS++ +  +   L +G+QIH
Sbjct: 217 IVSWNGILSGFNRSGYHKEAVIMFQKMHHLGF-CPDQVTVSSVLPSVGDSENLNMGRQIH 275

Query: 262 GLVIALGYESCLFISNAIVDMYAK---------------------CSDIIA--------- 291
           G VI  G      + +A++DMY K                     C+  I          
Sbjct: 276 GYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNGLVD 335

Query: 292 -AKDIFGRMRRK----DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
            A ++FG  + +    +VVSWTSII G AQ+G+  E L L+ EM  AGVKPN VT   ++
Sbjct: 336 KALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIPSML 395

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            AC ++  +G GR      +  + +   +   + L+D+ ++ G +  ++ +   MP + +
Sbjct: 396 PACGNIAALGHGRSTHGFAVRVH-LLDDVHVGSALIDMYAKCGRIKMSQIVFNMMPTK-N 453

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLL--SLKPEDPSSYILLS 448
              W +L++    H   +    +   L+   LKP+  S   LLS
Sbjct: 454 LVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLS 497



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 128/312 (41%), Gaps = 71/312 (22%)

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q HA  + S   +D  + + L+  Y+     N+A  +  SI                   
Sbjct: 36  QAHARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSI------------------- 76

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
                       P   ++ +++L+  L +++    +   F  M   G+ I D  VL ++ 
Sbjct: 77  ------------PDPTVYSFSSLIYALTKAKLFSQSIGVFSRMFSHGL-IPDTHVLPNLF 123

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
             CA  +  + GKQIH +    G +   F+  ++  MY +C  +  A+ +F RM  KDVV
Sbjct: 124 KVCAELSAFKAGKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVV 183

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           + ++++ G A+ G  EE + +  EM  +G++PN V++ G++                   
Sbjct: 184 TCSALLCGYARKGCLEEVVRILSEMEKSGIEPNIVSWNGILSG----------------- 226

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHHRN 422
                               +RSG+  EA  + + M    F PD+ T +++L +     N
Sbjct: 227 -------------------FNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSEN 267

Query: 423 TEMGTRVANHLL 434
             MG ++  +++
Sbjct: 268 LNMGRQIHGYVI 279


>gi|125601229|gb|EAZ40805.1| hypothetical protein OsJ_25283 [Oryza sativa Japonica Group]
          Length = 492

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/453 (43%), Positives = 292/453 (64%), Gaps = 1/453 (0%)

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
            AR VFD + +++ VSW  M+  YA  G    A EIF+    R+ F W++++S   +SR 
Sbjct: 41  EARKVFDGMPMRDLVSWNTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRR 100

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             +A   + EM    + I D + L S+V AC++   L +G ++H  V +   E  L +  
Sbjct: 101 SKEALELWREMHAASI-IPDCITLVSVVSACSDLGALAVGAEVHRFVESNRIELDLKLGT 159

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           A++DMYAKC DI +A+ +F RM  KDV +W+S+I+G A HG   E+L+L+ +M+S G+KP
Sbjct: 160 ALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEGMKP 219

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           N VTFVG++ AC+HVGLV +G+K F+SM E +GI P+++HY C++DLL RSGH++EA  L
Sbjct: 220 NGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCMVDLLGRSGHVEEARQL 279

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           I++M FEPD   W ALL AC+ H+N E+       L  L P     Y+LLSN+YA A  W
Sbjct: 280 IRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMAKLRVLDPLGDGHYVLLSNIYAQANSW 339

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
           + V+++RK +    +++ PG S IE+ +  H F +G+  HP   EI+ +L E+   +K+ 
Sbjct: 340 EGVAEMRKTIRRDNIQRIPGRSSIEWDEKIHEFVSGDRLHPRSKEIYRVLEEMMDRLKQA 399

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GY P T  VL D++++ KER L  HSE+LA+A+ LL +   + +R+ KNLR C DCH  M
Sbjct: 400 GYKPMTGLVLQDIDEQSKERSLAEHSEKLAIAFALLTTPARSTIRITKNLRACEDCHSAM 459

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K+IS +  R+++VRD  R+HHF +G+CSC D+W
Sbjct: 460 KLISLVYDRKLIVRDRNRFHHFSEGQCSCKDYW 492



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 130/296 (43%), Gaps = 52/296 (17%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT+I  Y     V  A  + +    RD  SW+S+++AY ++   ++ + ++  M A   +
Sbjct: 58  NTMIHGYAMRGEVGLAREIFDGTEDRDAFSWSSMISAYAKSRRSKEALELWREMHAA-SI 116

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNAR 160
            PD     S+V AC  LGA  +G +VH  FV S   + D+ + ++L+DMYAKCG   +A+
Sbjct: 117 IPDCITLVSVVSACSDLGALAVGAEVHR-FVESNRIELDLKLGTALIDMYAKCGDIESAQ 175

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            VFD +  K+  +W++M+   A  G   +++ +F +                        
Sbjct: 176 RVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMISEG------------------- 216

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK-------QIHGLVIALGYESCL 273
                  M+  GV  V  L+      AC +  ++  GK       ++HG+   + +  C+
Sbjct: 217 -------MKPNGVTFVGVLI------ACTHVGLVSEGKKYFRSMNEVHGIEPTVEHYGCM 263

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQ---AEETLA 325
                 VD+  +   +  A+ +   M    D + W +++     H     AEE +A
Sbjct: 264 ------VDLLGRSGHVEEARQLIRSMTFEPDTIIWRALLGACRIHKNVEIAEEAMA 313



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/163 (25%), Positives = 81/163 (49%), Gaps = 13/163 (7%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   LID Y KC  ++ A  + + MP++D  +W+S++       L  +++S+FS M++ +
Sbjct: 157 LGTALIDMYAKCGDIESAQRVFDRMPEKDVQTWSSMIIGLANHGLGHESLSLFSKMIS-E 215

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQ----VHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
            ++P+   F  ++ AC  +G    GK+    ++    + P  +       +VD+  + G 
Sbjct: 216 GMKPNGVTFVGVLIACTHVGLVSEGKKYFRSMNEVHGIEPTVEH---YGCMVDLLGRSGH 272

Query: 156 PNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKKDAMEIFEQA 197
              AR +  S+  + +++ W A+L A     R    +EI E+A
Sbjct: 273 VEEARQLIRSMTFEPDTIIWRALLGAC----RIHKNVEIAEEA 311


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/591 (34%), Positives = 333/591 (56%), Gaps = 34/591 (5%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
            ++ +HA II  GLH+   L   LI        + YA  L   +P  D   + S+L   +
Sbjct: 42  NLQQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTS 101

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           +      T+  +  ML     Q + + F S++KAC  L A RLGK++H+  ++  +  D 
Sbjct: 102 KFGFSIDTVLFYRRMLFSGAPQSN-YTFTSVIKACADLSALRLGKEIHSHVMVCGYGSDM 160

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V+++L+ +YAK                               +   K A ++F+  P R
Sbjct: 161 YVQAALIALYAK-------------------------------ASDMKVAKKVFDAMPQR 189

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
            +  W +L+SG  Q+    ++   F  M   G    D   + S++ +C+    L+ G  +
Sbjct: 190 TIIAWNSLISGYDQNGLPQESIGLFHLMMESGFQ-PDSATIVSLLSSCSQLGALDFGCWL 248

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H      G++  + +  ++++MY +C ++  A+++F  M+ ++VV+WT++I G   HG  
Sbjct: 249 HDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYG 308

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
            + + L+ EM + G +PN +TFV ++ AC+H GL+  GR++F SM E YG+ P ++H  C
Sbjct: 309 RQAMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVC 368

Query: 381 LLDLLSRSGHLDEAENLIKA-MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           ++D+  R+G L++A   IK  +P EP    W ++L AC+ HRN ++G +VA H+LS++PE
Sbjct: 369 MVDMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPE 428

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           +P  Y++LSN+YA A     V  VR +M+   +KK+ GYS IE  + +++F  G+ SHP 
Sbjct: 429 NPGHYVMLSNIYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQ 488

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
            + I+  L EL       GYVP   S++HD+E++E++  L +HSE+LA+A+GLLK+  G 
Sbjct: 489 TNTIYRYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLLKTNQGE 548

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +R+VKNLR+C DCH  +K IS I  REI+VRD  R+HHFKDG CSC D+W
Sbjct: 549 TIRIVKNLRICEDCHSAIKHISIIADREIIVRDKFRFHHFKDGSCSCLDYW 599



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 167/371 (45%), Gaps = 51/371 (13%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ CA        K +H+ ++  G      +   LI  Y K   ++ A  + + MPQR  
Sbjct: 132 IKACADLSALRLGKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTI 191

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           ++W S+++ Y+Q  LPQ++I +F  M+     QPD     SL+ +C  LGA   G  +H 
Sbjct: 192 IAWNSLISGYDQNGLPQESIGLFHLMME-SGFQPDSATIVSLLSSCSQLGALDFGCWLHD 250

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               + F  + V+ +SL++MY +CG  + AR VFDS+K +N V+WTAM+S Y   G  + 
Sbjct: 251 YADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQ 310

Query: 190 AMEIFEQ----APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR-----EGVD----IV 236
           AME+F +     P  N   + A++S    S    D    F  M+       GV+    +V
Sbjct: 311 AMELFTEMRAYGPRPNNITFVAVLSACAHSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMV 370

Query: 237 D------------------------PLVLSSIVGACANFAVLELGKQIHGLVIALGYES- 271
           D                        P V +S++GAC      +LG ++   V+++  E+ 
Sbjct: 371 DMFGRAGLLNDAYQFIKKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEPENP 430

Query: 272 --CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV---------GTAQHGQA 320
              + +SN I  +  +   +   +++  R R K  V +++I +         G   H Q 
Sbjct: 431 GHYVMLSN-IYALAGRMDRVEMVRNMMTRRRLKKQVGYSTIEINRKTYLFSMGDKSHPQT 489

Query: 321 EETLALYDEMV 331
                  DE++
Sbjct: 490 NTIYRYLDELM 500


>gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa]
 gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 208/520 (40%), Positives = 312/520 (60%), Gaps = 37/520 (7%)

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC- 153
           ML   KL P+ F +  ++KAC  +G   LGK VH   +   F D+  V+++LV MY  C 
Sbjct: 1   MLERKKL-PNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCR 59

Query: 154 ---GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVS 210
              G    AR VFD +   +SVSW+A                               ++ 
Sbjct: 60  GGEGGIEFARKVFDEMYKSDSVSWSA-------------------------------MIG 88

Query: 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE 270
           G V+     DA   F EM+ +GV   D + + S++ AC     LELGK +   V     +
Sbjct: 89  GYVRVGRSSDAINLFREMQIKGV-CPDEITMVSVLSACTGLGALELGKWVESYVEKERVQ 147

Query: 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEM 330
             + +SNA++DM+AKC D+  A ++F  MR +++VSWTS+I G A HG+  E +A+++EM
Sbjct: 148 KNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEAVAVFEEM 207

Query: 331 VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH 390
           V +GV P++V F+GL+ ACSH GLV KG++ F SM +D+ I P ++HY C++D+L R+G 
Sbjct: 208 VRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPKIEHYGCMVDMLCRAGL 267

Query: 391 LDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNV 450
           + EA   ++ MP +P+   W  L++AC+ H   ++G ++   L+  +P   S+Y+LLSN+
Sbjct: 268 VKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLIRNEPMHESNYVLLSNI 327

Query: 451 YASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTEL 510
           YA  + W+  +++R+ M +  +KK PG + IE     + F AG+ SH    EI+E++ E+
Sbjct: 328 YAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIYEFVAGDKSHAQSKEIYEMVDEM 387

Query: 511 DAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVC 570
             EMKR GY+P T+ VL D++ ++KE  L  HSE+LA+A+ LL + PGT++R+VKNLRVC
Sbjct: 388 GKEMKRAGYMPTTTEVLLDIDDEDKEDTLNRHSEKLAIAFALLNTPPGTLIRIVKNLRVC 447

Query: 571 GDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            DCH   K IS+I  REIVVRD  R+HHFK+G CSC DFW
Sbjct: 448 DDCHSASKFISKIYNREIVVRDRNRFHHFKNGLCSCRDFW 487



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/382 (25%), Positives = 169/382 (44%), Gaps = 64/382 (16%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC----DLVQYAHHLL 61
           Y   L+ CA        K++H  ++K G      + NTL+  Y  C      +++A  + 
Sbjct: 13  YPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARKVF 72

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
           +EM + D VSW++++  Y +       I++F  M  +  + PD     S++ AC  LGA 
Sbjct: 73  DEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREM-QIKGVCPDEITMVSVLSACTGLGAL 131

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
            LGK V +         +  + ++L+DM+AKCG  + A  +F S++ +N VSWT+++   
Sbjct: 132 ELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGL 191

Query: 182 ARSGRKKDAMEIFEQ------APVRNLF---LWTALVSGLVQSRN--------------E 218
           A  GR  +A+ +FE+       P   +F   L     SGLV                  +
Sbjct: 192 AMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFDSMRKDFSIVPK 251

Query: 219 IDAFYSFIEMR------REGVDIV-------DPLVLSSIVGACANFAVLELGKQIHGLVI 265
           I+ +   ++M       +E +  V       +P+V  +++ AC     L+LG++I   +I
Sbjct: 252 IEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGELKLGEKITRQLI 311

Query: 266 ALGYESCLFISNAIV--DMYAKCSD------IIAAKDIFGRMRRKDVVSWTSI------- 310
                  +  SN ++  ++YAK SD      I  A D+ G    K +   T I       
Sbjct: 312 R---NEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKG---MKKIPGSTMIELDNEIY 365

Query: 311 --IVGTAQHGQAEETLALYDEM 330
             + G   H Q++E   + DEM
Sbjct: 366 EFVAGDKSHAQSKEIYEMVDEM 387


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 229/611 (37%), Positives = 337/611 (55%), Gaps = 45/611 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--R 67
           L  C+   +    + +H+ I   G      + N ++  YG+C  V+ A  + + M +  R
Sbjct: 254 LSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALR 313

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           D VSW  +L+AY   +  +  I ++  M    +L+ D   + SL+ AC S     LG+ +
Sbjct: 314 DVVSWNIMLSAYVHNDRGKDAIQLYQRM----QLRADKVTYVSLLSACSSAEDVGLGRVL 369

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           H   V     +D++ K+ +V                            A++S YA+ G  
Sbjct: 370 HKQIV-----NDELEKNVIVG--------------------------NALVSMYAKCGSH 398

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA---FYSFIEMRREGVDIV---DPLVL 241
            +A  +F++   R++  WT ++S  V+ R   +A   F   +E+ + G       D L  
Sbjct: 399 TEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAF 458

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF-GRMR 300
            +I+ ACA+ + LE GK +     + G  S   +  A+V++Y KC +I   + IF G   
Sbjct: 459 VTILNACADVSALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCS 518

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
           R DV  W ++I   AQ GQ+ E L L+  M   GV+P+  +FV ++ ACSH GL  +G+ 
Sbjct: 519 RPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHTGLEDQGKS 578

Query: 361 LFKSMIEDY-GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
            F SM  +Y  +T ++QH+ C+ DLL R G L EAE  ++ +P +PD   W +LL+AC++
Sbjct: 579 YFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWTSLLAACRN 638

Query: 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
           HR+ +    VAN LL L+P   + Y+ LSN+YA    W  V+KVRK M+   VKKE G S
Sbjct: 639 HRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQGVKKERGVS 698

Query: 480 YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL 539
            IE GK  H F  G+ +HP   EI E L +L ++MK  GYVPDT  VLH ++++EKER L
Sbjct: 699 TIEIGKYMHDFATGDDAHPRNREIREELAKLHSQMKECGYVPDTKMVLHFVDEQEKERLL 758

Query: 540 FWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
           F HSERLA+A GL+ +  GT LRV KNLRVC DCH   K+IS+I  R+IVVRD TR+H F
Sbjct: 759 FSHSERLAIALGLISTPLGTPLRVTKNLRVCSDCHTATKLISKIAGRKIVVRDPTRFHLF 818

Query: 600 KDGKCSCNDFW 610
           KDGKCSC D+W
Sbjct: 819 KDGKCSCQDYW 829



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 189/401 (47%), Gaps = 47/401 (11%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ-RDHVSWASILTAYNQAN 83
           +H  ++   L     + N L++ Y KC  + +A  +  +M + R+ +SW+ +  A+    
Sbjct: 167 IHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHG 226

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
              + +  F  ML L  ++       +++ AC S    + G+ +H+C  LS F  + +V 
Sbjct: 227 NVWEALRHFRFMLLLG-IKATKSAMVTILSACSSPALVQDGRLIHSCIALSGFESELLVA 285

Query: 144 SSLVDMYAKCGLPNNARAVFDSIK--LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           ++++ MY +CG    AR VFD++   L++ VSW  MLSAY  + R KDA++++++  +R 
Sbjct: 286 NAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHNDRGKDAIQLYQRMQLR- 344

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                                              D +   S++ AC++   + LG+ +H
Sbjct: 345 ----------------------------------ADKVTYVSLLSACSSAEDVGLGRVLH 370

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             ++    E  + + NA+V MYAKC     A+ +F +M ++ ++SWT+II    +     
Sbjct: 371 KQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVA 430

Query: 322 ETLALYDEMV-------SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
           E   L+ +M+       S  VKP+ + FV ++ AC+ V  + +G K+        G++  
Sbjct: 431 EACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQG-KMVSEQAASCGLSSD 489

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
               T +++L  + G ++E   +   +   PD   W A+++
Sbjct: 490 KAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIA 530



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 110/447 (24%), Positives = 207/447 (46%), Gaps = 48/447 (10%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP----LPNTLIDAYGKCDLVQYAHHLL 61
           Y   L+ CAR Q     + +H+  +K   H   P    L N ++  Y  CD    A    
Sbjct: 46  YARLLQRCARAQALPEGRKIHSLAVK---HNLLPGNLILGNHIVSMYAHCDSPGDAKAAF 102

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
           + + QR+  SW  ++ A+  +   ++T+     M   D ++PD   F + + +CG   + 
Sbjct: 103 DALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQ-DGVRPDAVTFITALGSCGDPESL 161

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI-KLKNSVSWTAMLSA 180
           R G ++H   V S    D  V ++L++MY KCG  ++A+ VF  + + +N +SW+ M  A
Sbjct: 162 RDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGA 221

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           +A  G   +A+  F        F+   L+ G+  +++                       
Sbjct: 222 HALHGNVWEALRHFR-------FM---LLLGIKATKS----------------------A 249

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           + +I+ AC++ A+++ G+ IH  +   G+ES L ++NA++ MY +C  +  A+ +F  M 
Sbjct: 250 MVTILSACSSPALVQDGRLIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMD 309

Query: 301 R--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
              +DVVSW  ++     + + ++ + LY  M    ++ ++VT+V L+ ACS    VG G
Sbjct: 310 EALRDVVSWNIMLSAYVHNDRGKDAIQLYQRM---QLRADKVTYVSLLSACSSAEDVGLG 366

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
           R L K ++ D  +  ++     L+ + ++ G   EA  +   M  +    +W  ++SA  
Sbjct: 367 RVLHKQIVNDE-LEKNVIVGNALVSMYAKCGSHTEARAVFDKME-QRSIISWTTIISAYV 424

Query: 419 HHRNTEMGTRVANHLLSLKPEDPSSYI 445
             R       +   +L L+    S  +
Sbjct: 425 RRRLVAEACHLFQQMLELEKNGSSQRV 451



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 156/335 (46%), Gaps = 38/335 (11%)

Query: 91  IFSTMLALDK--LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS-LV 147
           I S +L L+K  ++ ++  +A L++ C    A   G+++H+  V       +++  + +V
Sbjct: 27  IASAVLDLEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIV 86

Query: 148 DMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTA 207
            MYA C  P +A+A FD++                            EQ   RNL+ WT 
Sbjct: 87  SMYAHCDSPGDAKAAFDAL----------------------------EQ---RNLYSWTG 115

Query: 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267
           LV+    S    +   +   MR++GV   D +   + +G+C +   L  G +IH +V+  
Sbjct: 116 LVAAFAISGQSKETLRALERMRQDGVR-PDAVTFITALGSCGDPESLRDGIRIHQMVVDS 174

Query: 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-KDVVSWTSIIVGTAQHGQAEETLAL 326
             E    +SNA+++MY KC  +  AK +F +M R ++V+SW+ +    A HG   E L  
Sbjct: 175 RLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRH 234

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
           +  M+  G+K  +   V ++ ACS   LV  GR L  S I   G    L     ++ +  
Sbjct: 235 FRFMLLLGIKATKSAMVTILSACSSPALVQDGR-LIHSCIALSGFESELLVANAVMTMYG 293

Query: 387 RSGHLDEAENLIKAMPFE-PDEPTWAALLSACKHH 420
           R G ++EA  +  AM     D  +W  +LSA  H+
Sbjct: 294 RCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVHN 328



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 139/328 (42%), Gaps = 54/328 (16%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  L  C+  +     + LH QI+   L +   + N L+  Y KC     A  + ++M 
Sbjct: 350 YVSLLSACSSAEDVGLGRVLHKQIVNDELEKNVIVGNALVSMYAKCGSHTEARAVFDKME 409

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDK------LQPDHFVFASLVKACGSLG 119
           QR  +SW +I++AY +  L  +   +F  ML L+K      ++PD   F +++ AC  + 
Sbjct: 410 QRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVS 469

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAML 178
           A   GK V           D  V +++V++Y KCG     R +FD +  +  V  W AM+
Sbjct: 470 ALEQGKMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMI 529

Query: 179 SAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238
           + YA+ G+  +A+++F          W                      M  EGV   D 
Sbjct: 530 AVYAQFGQSHEALKLF----------W---------------------RMEMEGVR-PDS 557

Query: 239 LVLSSIVGACANFAVLELGK--------QIHGLVIALGYESCLFISNAIVDMYAKCSDII 290
               SI+ AC++  + + GK        +   +   + +  C      + D+  +   + 
Sbjct: 558 FSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGC------VADLLGRGGRLK 611

Query: 291 AAKDIFGRMRRK-DVVSWTSIIVGTAQH 317
            A++   ++  K D V+WTS++     H
Sbjct: 612 EAEEFLEKLPVKPDAVAWTSLLAACRNH 639


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 219/598 (36%), Positives = 342/598 (57%), Gaps = 35/598 (5%)

Query: 14  ARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWA 73
           AR    L    +HA  +K GL     + N+L+D Y K   ++Y   + ++MP +D VSW 
Sbjct: 394 ARSGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWT 453

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           +I+  + Q     + + +F   + L+ +  D  + +S++ AC  L      K++H+ +++
Sbjct: 454 TIIAGHAQNGSHSRALELFRE-VQLEGIDLDVMMISSILLACSGLKLISSVKEIHS-YII 511

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
                D V+++ +VD+Y +CG  + A  +F+ I+ K+ VSWT+M+S Y  +G   +A+E+
Sbjct: 512 RKGLSDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALEL 571

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
           F                                 M+  GV+  D + L SI+ A A+ + 
Sbjct: 572 FHL-------------------------------MKETGVE-PDSISLVSILSAAASLSA 599

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L+ GK+IHG +I  G+     +++ +VDMYA+C  +  ++++F  +R KD+V WTS+I  
Sbjct: 600 LKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIRNKDLVLWTSMINA 659

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
              HG     + L+  M    + P+ + FV ++YACSH GL+ +GR+  +SM  +Y + P
Sbjct: 660 YGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYACSHSGLMNEGRRFLESMKYEYQLEP 719

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
             +HY CL+DLL R+ HL+EA   +K M  EP    W ALL AC+ H N E+G   A  L
Sbjct: 720 WPEHYACLVDLLGRANHLEEAYQFVKGMEVEPTAEVWCALLGACQIHSNKELGEIAAQKL 779

Query: 434 LSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAG 493
           L + PE+P +Y+L+SNVY++   W+ V  VR  M    +KK PG S+IE G   H F A 
Sbjct: 780 LEMDPENPGNYVLVSNVYSAERRWKDVEXVRMRMKASGLKKNPGCSWIEVGNKVHTFMAR 839

Query: 494 ETSHPLKDEIFELLTELDAEM-KRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGL 552
           + SHP   EI+  L+++  ++ K  GYV  T  VLH+ +++EK + L+ HSERLA+AYG+
Sbjct: 840 DKSHPQSYEIYSKLSQITEKLAKEGGYVAQTKFVLHNAKEEEKVQMLYGHSERLAIAYGM 899

Query: 553 LKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           L +  G  LR+ KNLRVCGDCH   K+IS+  +RE+V+RDA R+HHFK G CSC D W
Sbjct: 900 LTTPEGASLRITKNLRVCGDCHNFCKLISKFFERELVMRDANRFHHFKGGVCSCGDVW 957



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 192/419 (45%), Gaps = 39/419 (9%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKL-GLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           Y   L +C   +     + +HA +I    L     L   L+  YGKC  +  A  L + M
Sbjct: 81  YSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGM 140

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           P +   +W +++ AY     P  ++ ++  M  +  +  D   F  ++KACG L   R G
Sbjct: 141 PHKTIFTWNAMIGAYVTNGEPLGSLELYREM-RVSGIPLDACTFPCILKACGLLKDRRYG 199

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYAR 183
            +VH   +   +     V +S+V MY KC   N AR +FD +  K + VSW +M+SAY+ 
Sbjct: 200 AEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSS 259

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           +G+  +A+ +F                G +Q  +     Y+F+                +
Sbjct: 260 NGQSIEALRLF----------------GEMQKASLAPNTYTFV----------------A 287

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
            + AC + + ++ G  IH  V+   Y   +F++NA++ MYA+   +  A +IF  M   D
Sbjct: 288 ALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWD 347

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
            +SW S++ G  Q+G   E L  Y EM  AG KP+ V  + +I A +  G    G ++  
Sbjct: 348 TISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHA 407

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
             +++ G+   LQ    L+D+ ++   +   + +   MP + D  +W  +++   H +N
Sbjct: 408 YAMKN-GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVVSWTTIIAG--HAQN 462



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 193/425 (45%), Gaps = 38/425 (8%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR-DHVSWASILTAYNQAN 83
           +H   IK G      + N+++  Y KC+ +  A  L + MP++ D VSW S+++AY+   
Sbjct: 202 VHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNG 261

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
              + + +F  M     L P+ + F + ++AC      + G  +HA  + S +  +  V 
Sbjct: 262 QSIEALRLFGEMQKAS-LAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVA 320

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           ++L+ MYA                               R G+  +A  IF      +  
Sbjct: 321 NALIAMYA-------------------------------RFGKMGEAANIFYNMDDWDTI 349

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            W +++SG VQ+    +A   + EMR  G    D + + SI+ A A       G QIH  
Sbjct: 350 SWNSMLSGFVQNGLYHEALQFYHEMRDAGQK-PDLVAVISIIAASARSGNTLHGMQIHAY 408

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
            +  G +S L + N++VDMYAK   +     IF +M  KDVVSWT+II G AQ+G     
Sbjct: 409 AMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRA 468

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           L L+ E+   G+  + +    ++ ACS + L+   +++   +I        LQ+   ++D
Sbjct: 469 LELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQN--GIVD 526

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           +    G++D A  + + + F+ D  +W +++S C  H           HL+     +P S
Sbjct: 527 VYGECGNVDYAARMFELIEFK-DVVSWTSMIS-CYVHNGLANEALELFHLMKETGVEPDS 584

Query: 444 YILLS 448
             L+S
Sbjct: 585 ISLVS 589


>gi|356545826|ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 607

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/597 (37%), Positives = 342/597 (57%), Gaps = 15/597 (2%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL-----VQYAHHLLEEMPQRDHVSWASIL 76
           VK  H+ +++LGL       + +   +  C L     + YA  L   +P  D   + ++ 
Sbjct: 18  VKQQHSLLLRLGLSTNN---HAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLYNTLF 74

Query: 77  TAY-NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP 135
            A+ + +  P  ++  +S ML    + P+ F F SL++AC         KQ+HA  +   
Sbjct: 75  KAFFSLSQTPSLSLLFYSHMLQ-HCVTPNAFTFPSLIRACK---LEEEAKQLHAHVLKFG 130

Query: 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
           F  D    ++L+ +Y   G  ++AR VF ++   N VSWT+++S Y++ G   +A  +FE
Sbjct: 131 FGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFRVFE 190

Query: 196 QAPVR-NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
             P + N   W A+++  V+     +AF  F  MR E    +D  V ++++ AC     L
Sbjct: 191 LMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGVGAL 250

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
           E G  IH  V   G      ++  I+DMY KC  +  A  +F  ++ K V SW  +I G 
Sbjct: 251 EQGMWIHKYVEKTGIVLDSKLATTIIDMYCKCGCLDKAFHVFCGLKVKRVSSWNCMIGGF 310

Query: 315 AQHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
           A HG+ E+ + L+ EM   A V P+ +TFV ++ AC+H GLV +G   F+ M++ +GI P
Sbjct: 311 AMHGKGEDAIRLFKEMEEEAMVAPDSITFVNVLTACAHSGLVEEGWYYFRYMVDVHGIDP 370

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
           + +HY C++DLL+R+G L+EA+ +I  MP  PD     ALL AC+ H N E+G  V N +
Sbjct: 371 TKEHYGCMVDLLARAGRLEEAKKVIDEMPMSPDAAVLGALLGACRIHGNLELGEEVGNRV 430

Query: 434 LSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAG 493
           + L PE+   Y++L N+YAS   W+ V+ VRKLM    VKKEPG+S IE     + F AG
Sbjct: 431 IELDPENSGRYVILGNMYASCGKWEQVAGVRKLMDDRGVKKEPGFSMIEMEGVVNEFVAG 490

Query: 494 ETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLL 553
              HPL + I+  + E+   ++  G+VPDT  VLHD+ ++E+E  LF+HSE+LA+AYGLL
Sbjct: 491 GRDHPLAEAIYAKIYEMLESIRVVGFVPDTDGVLHDLVEEERENPLFYHSEKLAIAYGLL 550

Query: 554 KSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K+  G  LRV KNLRVC DCH   KMIS++   +I++RD +R+HHF +G+CSC D+W
Sbjct: 551 KTKRGETLRVTKNLRVCKDCHQASKMISKVYDCDIIIRDRSRFHHFSNGECSCKDYW 607


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/573 (39%), Positives = 329/573 (57%), Gaps = 36/573 (6%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLA-- 97
           L   L+D Y KC  + YA  + + MP R+ V+W++++  +   +   +   +F  MLA  
Sbjct: 275 LGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG 334

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
           L  L P     AS ++AC SL   R+G+Q+HA    S    D    +SL+ MYAK     
Sbjct: 335 LCFLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK----- 387

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
                                     +G    A+ +F++  V++   ++ALVSG VQ+  
Sbjct: 388 --------------------------AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGR 421

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             +AF  F +M+   V+  D   + S++ AC++ A L+ G+  HG VI  G  S   I N
Sbjct: 422 AEEAFLVFKKMQACNVE-PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICN 480

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           A++DMYAKC  I  ++ +F  M  +D+VSW ++I G   HG  +E  AL+ EM + G  P
Sbjct: 481 ALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP 540

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           + VTF+ L+ ACSH GLV +G+  F  M   YG+TP ++HY C++DLLSR G LDEA   
Sbjct: 541 DGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF 600

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           I++MP   D   W ALL AC+ ++N ++G +V+  +  L PE   +++LLSN+Y++A  +
Sbjct: 601 IQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRF 660

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
              ++VR +  V   KK PG S+IE     H F  G+ SHP   EI+  L  +   +K+ 
Sbjct: 661 DEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKL 720

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GY PDTS VL D+E++EKE+ L  HSE+LA+AYG+L       + V KNLRVCGDCH V+
Sbjct: 721 GYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVI 780

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K IS + +R I+VRDA R+HHFK+G+CSC DFW
Sbjct: 781 KHISLVKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  169 bits (427), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 192/442 (43%), Gaps = 77/442 (17%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H   I  GL     +   L+D Y KC  +  A H+   MP RD V+W ++L  Y   
Sbjct: 145 RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHH 204

Query: 83  NLPQKTIS-IFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL-------- 133
            +    ++ + S  + + +L+P+     +L+      GA   G  VHA  +         
Sbjct: 205 GMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRN 264

Query: 134 --SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
             S   D  ++ ++L+DMYAKCG    AR VFD++  +N V+W+                
Sbjct: 265 SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS---------------- 308

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
                          AL+ G V       AF  F  M  +G+  + P  ++S + ACA+ 
Sbjct: 309 ---------------ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASL 353

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
             L +G+Q+H L+   G  + L   N+++ MYAK   I  A  +F  M  KD VS+++++
Sbjct: 354 DHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALV 413

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G  Q+G+AEE   ++ +M +  V+P+  T V LI ACSH+  +  GR    S+I   G+
Sbjct: 414 SGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GL 472

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMP----------------------------- 402
                    L+D+ ++ G +D +  +   MP                             
Sbjct: 473 ASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLE 532

Query: 403 -----FEPDEPTWAALLSACKH 419
                F PD  T+  LLSAC H
Sbjct: 533 MNNLGFPPDGVTFICLLSACSH 554



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/379 (22%), Positives = 171/379 (45%), Gaps = 58/379 (15%)

Query: 57  AHHLLEEMPQRDHVSWASILTAYNQAN--LPQKTISIFSTMLALDKLQPDHFVFASLVKA 114
           AHHL +++P  D  ++  ++ AY+ ++       + ++  ML   ++ P+++ F   +KA
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLR-HRVAPNNYTFPFALKA 134

Query: 115 CGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSW 174
           C +L     G+ +H   + +    D  V ++L+DMY KC    +A  +F ++  ++ V+W
Sbjct: 135 CSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAW 194

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
            AML+ YA  G    A                  V+ L+  + ++        +R     
Sbjct: 195 NAMLAGYAHHGMYHHA------------------VAHLLSMQMQMH------RLRPNAST 230

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL--------------FISNAIV 280
           +V  L L +  GA A       G  +H   I     +CL               +  A++
Sbjct: 231 LVALLPLLAQQGALAQ------GTSVHAYCI----RACLHPNRNSKSKLTDGVLLGTALL 280

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG---VKP 337
           DMYAKC  ++ A+ +F  M  ++ V+W+++I G     +  +   L+  M++ G   + P
Sbjct: 281 DMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSP 340

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
             +     + AC+ +  +  G +L  +++   G+   L     LL + +++G +D+A  L
Sbjct: 341 TSIA--SALRACASLDHLRMGEQL-HALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 397

Query: 398 IKAMPFEPDEPTWAALLSA 416
              M  + D  +++AL+S 
Sbjct: 398 FDEMAVK-DTVSYSALVSG 415



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 111/249 (44%), Gaps = 21/249 (8%)

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR--NEIDAFYSFIEMRREGV---DIVDP 238
           SG    A  +F+Q P  ++  +  L+     S      D  + +  M R  V   +   P
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
             L     AC+  A    G+ IH   I  G ++ LF+S A++DMY KC+ +  A  IF  
Sbjct: 130 FALK----ACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFAT 185

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLA--LYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
           M  +D+V+W +++ G A HG     +A  L  +M    ++PN  T V L+   +  G + 
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 357 KGRKLFKSMIE---------DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           +G  +    I             +T  +   T LLD+ ++ G L  A  +  AMP   +E
Sbjct: 246 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NE 304

Query: 408 PTWAALLSA 416
            TW+AL+  
Sbjct: 305 VTWSALIGG 313


>gi|357457743|ref|XP_003599152.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488200|gb|AES69403.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 221/590 (37%), Positives = 327/590 (55%), Gaps = 34/590 (5%)

Query: 22   VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
            +K +HA +I   +H    + NTL+  YGK  L+  A  + + MP+RD V+W +++  +  
Sbjct: 569  LKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLMDEAQKVCKIMPERDVVTWNALIGGHAD 628

Query: 82   ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG-ATRLGKQVHACFVLSPFCDDD 140
               P  TI  F+ M   + L  ++    +L+  C S     + G  +HA  V++ F  D 
Sbjct: 629  DKDPNATIQAFNLMRR-EGLLSNYITIVNLLGTCMSPDYLLKHGMPIHAHIVVAGFELDT 687

Query: 141  VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
             V+SSL+ MYA+CG  N +  +FD +  KNS +W A+ SA A  G  ++A++   +    
Sbjct: 688  YVQSSLITMYAQCGDLNTSSYIFDVLANKNSSTWNAIFSANAHYGPGEEALKFIAR---- 743

Query: 201  NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
                                       MR +GVD+ D    S  +    N  VL+ G+Q+
Sbjct: 744  ---------------------------MRNDGVDL-DQFSFSVALATIGNLTVLDEGQQL 775

Query: 261  HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
            H  +I LG+E   ++ NA +DMY KC +I     I    + +   SW  +I   A+HG  
Sbjct: 776  HSWIIKLGFELDEYVLNATMDMYGKCGEIDDVFRILPIPKIRSKRSWNILISALARHGFF 835

Query: 321  EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
             +    + EM+  G+KP+ VTFV L+ ACSH GLV +G   F SM  ++G+  +++H  C
Sbjct: 836  RQATEAFHEMLDLGLKPDHVTFVSLLSACSHGGLVDEGLVYFSSMTSEFGVPTAIEHCVC 895

Query: 381  LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
            ++DLL RSG L EAE  I  MP  P+E  W +LL+ACK H N E+G + A+ L  L   D
Sbjct: 896  IIDLLGRSGRLAEAEGFIDKMPVPPNEFVWRSLLAACKVHGNLELGRKAADRLFELNSSD 955

Query: 441  PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
             S+Y+L SNV AS   W  V  VRK M    +KK+P  S+I+       F  G+  HP  
Sbjct: 956  DSAYVLYSNVCASTQRWGDVENVRKQMESQSLKKKPACSWIKLKNKVMTFGMGDQFHPQS 1015

Query: 501  DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
             +I+  L EL    +  G++PDTS  L D ++++KE  L+ HSER+A+A+GL+ S  G+ 
Sbjct: 1016 AQIYAKLEELRKMTREEGHMPDTSYALQDTDEEQKEHNLWNHSERIALAFGLINSAEGSP 1075

Query: 561  LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            LR+ KNLRVCGDCH V K++S+I  R+IVVRD+ R+HHF  GKCSC+D+W
Sbjct: 1076 LRIFKNLRVCGDCHSVFKLVSKIVGRKIVVRDSYRFHHFHGGKCSCSDYW 1125



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 184/396 (46%), Gaps = 37/396 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LHA  +K  + Q     NTL++ Y K   ++YA H+ ++M  R+  SW ++++ + + 
Sbjct: 167 KALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRNDASWNNMISGFVRV 226

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA-TRLGKQVHACFVLSPFCDDDV 141
               K +  F  M   + + P  +V AS+V AC   G  T   +Q+H   V      +  
Sbjct: 227 GWYHKAMQFFCHMFE-NGVTPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVF 285

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V +SL+  Y   G  + A  +F+ I+  N VSWT+++  YA +G  K+ + I+       
Sbjct: 286 VGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRH----- 340

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                                     +R  G+ I     +++++  C  F    +G QI 
Sbjct: 341 --------------------------LRHNGL-ICTGNTMATVIRTCGMFGDKTMGYQIL 373

Query: 262 GLVIALGYE-SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           G VI  G + S + ++N+++ M+     +  A  +F  M+ +D +SW SII  +A +G+ 
Sbjct: 374 GDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRF 433

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           EE+L  +  M     K + +T   L+ AC     +  GR L   +I   G+  ++     
Sbjct: 434 EESLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGRGL-HGLITKSGLESNVCVCNS 492

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           LL + +++G  ++AE +   MP   D  +W +++++
Sbjct: 493 LLSMYAQAGSSEDAELVFHTMP-ARDLISWNSMMAS 527



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 185/395 (46%), Gaps = 39/395 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  ++K GL     +  +L+  YG    V  A+ L EE+ + + VSW S++  Y   
Sbjct: 269 RQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSVSEANKLFEEIEEPNIVSWTSLMVCYADN 328

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV- 141
              ++ ++I+   L  + L       A++++ CG  G   +G Q+    + S      V 
Sbjct: 329 GHTKEVLNIYR-HLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVS 387

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V +SL+ M+        A  VF++++ ++++SW ++++A A +GR ++++          
Sbjct: 388 VANSLISMFGNYDSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESL---------G 438

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
            F W                      MRR      D + +S+++ AC +   L+ G+ +H
Sbjct: 439 HFFW----------------------MRRTHPK-TDYITISALLPACGSAQHLKWGRGLH 475

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           GL+   G ES + + N+++ MYA+      A+ +F  M  +D++SW S++    + G+  
Sbjct: 476 GLITKSGLESNVCVCNSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYS 535

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
             + L  EM+      N VTF   + AC ++    +  K+  + +  + +  +L     L
Sbjct: 536 HAILLLVEMLKTRKAMNYVTFTTALSACYNL----EKLKIVHAFVIHFAVHHNLIIGNTL 591

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           + +  + G +DEA+ + K MP E D  TW AL+  
Sbjct: 592 VTMYGKFGLMDEAQKVCKIMP-ERDVVTWNALIGG 625



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/431 (23%), Positives = 179/431 (41%), Gaps = 54/431 (12%)

Query: 5   HYLHRLRVCARHQIALTVKT------------LHAQIIKLGLHQYG-PLPNTLIDAYGKC 51
           H  H   +C  + +A  ++T            +   +IK GL      + N+LI  +G  
Sbjct: 340 HLRHNGLICTGNTMATVIRTCGMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNY 399

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
           D V+ A  +   M +RD +SW SI+TA       ++++  F  M      + D+   ++L
Sbjct: 400 DSVEEASRVFNNMQERDTISWNSIITASAHNGRFEESLGHFFWMRRTHP-KTDYITISAL 458

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           + ACGS    + G+ +H                    +  K GL +N             
Sbjct: 459 LPACGSAQHLKWGRGLHG-------------------LITKSGLESNVCVC--------- 490

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM--R 229
               ++LS YA++G  +DA  +F   P R+L  W ++++  V+      A    +EM   
Sbjct: 491 ---NSLLSMYAQAGSSEDAELVFHTMPARDLISWNSMMASHVEDGKYSHAILLLVEMLKT 547

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289
           R+ ++ V     ++ + AC N   LE  K +H  VI       L I N +V MY K   +
Sbjct: 548 RKAMNYV---TFTTALSACYN---LEKLKIVHAFVIHFAVHHNLIIGNTLVTMYGKFGLM 601

Query: 290 IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349
             A+ +   M  +DVV+W ++I G A       T+  ++ M   G+  N +T V L+  C
Sbjct: 602 DEAQKVCKIMPERDVVTWNALIGGHADDKDPNATIQAFNLMRREGLLSNYITIVNLLGTC 661

Query: 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
                + K      + I   G        + L+ + ++ G L+ +  +   +    +  T
Sbjct: 662 MSPDYLLKHGMPIHAHIVVAGFELDTYVQSSLITMYAQCGDLNTSSYIFDVLA-NKNSST 720

Query: 410 WAALLSACKHH 420
           W A+ SA  H+
Sbjct: 721 WNAIFSANAHY 731



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 147/358 (41%), Gaps = 38/358 (10%)

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN 170
           L K    +    +GK +HA  V      +    ++LV+MY+K G    A+ VFD +  +N
Sbjct: 153 LQKGFSEISEGNVGKALHALCVKDVIQQNTFYTNTLVNMYSKFGSIKYAQHVFDKMYDRN 212

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
             SW  M+S + R G    AM+                                F  M  
Sbjct: 213 DASWNNMISGFVRVGWYHKAMQF-------------------------------FCHMFE 241

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELG-KQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289
            GV      V++S+V AC     +  G +QIHG V+  G  S +F+  +++  Y     +
Sbjct: 242 NGV-TPSSYVIASMVTACDRSGCMTEGARQIHGYVVKCGLMSNVFVGTSLLHFYGTHGSV 300

Query: 290 IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349
             A  +F  +   ++VSWTS++V  A +G  +E L +Y  +   G+     T   +I  C
Sbjct: 301 SEANKLFEEIEEPNIVSWTSLMVCYADNGHTKEVLNIYRHLRHNGLICTGNTMATVIRTC 360

Query: 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
              G    G ++   +I+    T S+     L+ +      ++EA  +   M  E D  +
Sbjct: 361 GMFGDKTMGYQILGDVIKSGLDTSSVSVANSLISMFGNYDSVEEASRVFNNMQ-ERDTIS 419

Query: 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDP-SSYILLSNVYASAAMWQHVSKVRKL 466
           W ++++A  H+   E       H   ++   P + YI +S +  +    QH+   R L
Sbjct: 420 WNSIITASAHNGRFE---ESLGHFFWMRRTHPKTDYITISALLPACGSAQHLKWGRGL 474


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/608 (34%), Positives = 339/608 (55%), Gaps = 36/608 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   L+ C    +    + +HA ++  GL +   + N+++  Y K   V+ A  + + M 
Sbjct: 127 YPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRML 186

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            RD  SW ++++ + +    +    +F  M   D    D     +L+ ACG +   ++GK
Sbjct: 187 VRDLTSWNTMMSGFVKNGEARGAFEVFGDMRR-DGFVGDRTTLLALLSACGDVMDLKVGK 245

Query: 126 QVHACFVL---SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           ++H   V    S    +  + +S++DMY  C   + AR +F+ +++K+ VS         
Sbjct: 246 EIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVS--------- 296

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
                                 W +L+SG  +  +   A   F  M   G  + D + + 
Sbjct: 297 ----------------------WNSLISGYEKCGDAFQALELFGRMVVVGA-VPDEVTVI 333

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           S++ AC   + L LG  +   V+  GY   + +  A++ MYA C  ++ A  +F  M  K
Sbjct: 334 SVLAACNQISALRLGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEK 393

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           ++ + T ++ G   HG+  E ++++ EM+  GV P+E  F  ++ ACSH GLV +G+++F
Sbjct: 394 NLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIF 453

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
             M  DY + P   HY+CL+DLL R+G+LDEA  +I+ M  +P+E  W ALLSAC+ HRN
Sbjct: 454 YKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTALLSACRLHRN 513

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
            ++    A  L  L P+  S Y+ LSN+YA+   W+ V  VR L++   ++K P YS++E
Sbjct: 514 VKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRWEDVENVRALVAKRRLRKPPSYSFVE 573

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWH 542
             K  H F+ G+TSH   D+I+  L +L+ ++K+ GY PDTS VL+D+E++ KE+ L+ H
Sbjct: 574 LNKMVHQFFVGDTSHEQSDDIYAKLKDLNEQLKKAGYKPDTSLVLYDVEEEIKEKMLWDH 633

Query: 543 SERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           SERLA+A+ L+ + PGT +R+ KNLRVCGDCH V+KMIS++T REI++RD  R+HHF+DG
Sbjct: 634 SERLALAFALINTGPGTTIRITKNLRVCGDCHTVIKMISKLTNREIIMRDICRFHHFRDG 693

Query: 603 KCSCNDFW 610
            CSC  +W
Sbjct: 694 LCSCGGYW 701



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 126/472 (26%), Positives = 214/472 (45%), Gaps = 76/472 (16%)

Query: 25  LHAQIIKLG-LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           LHA +   G L +   L   L   Y  C  + YA H+ +++  ++   W S++  Y   N
Sbjct: 44  LHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVLKNSFLWNSMIRGYACNN 103

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
            P + + ++  ML   + +PD+F +  ++KACG L    +G++VHA  V+    +D  V 
Sbjct: 104 SPSRALFLYLKMLHFGQ-KPDNFTYPFVLKACGDLLLREMGRKVHALVVVGGLEEDVYVG 162

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           +S++ MY K G    AR VFD + +++  SW  M+S + ++G  + A E+F         
Sbjct: 163 NSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEARGAFEVFG-------- 214

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
                                  +MRR+G  + D   L +++ AC +   L++GK+IHG 
Sbjct: 215 -----------------------DMRRDGF-VGDRTTLLALLSACGDVMDLKVGKEIHGY 250

Query: 264 VIALGYESCL---FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           V+  G    +   F+ N+I+DMY  C  +  A+ +F  +R KDVVSW S+I G  + G A
Sbjct: 251 VVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDA 310

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
            + L L+  MV  G  P+EVT + ++ AC+ +  +  G  + +S +   G   ++   T 
Sbjct: 311 FQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGATV-QSYVVKRGYVVNVVVGTA 369

Query: 381 LLDLLSRSGHLDEAENLIKAMP----------------------------------FEPD 406
           L+ + +  G L  A  +   MP                                    PD
Sbjct: 370 LIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPD 429

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLL---SLKPEDPSSYILLSNVYASAA 455
           E  + A+LSAC H    + G  +   +    S++P  P+ Y  L ++   A 
Sbjct: 430 EGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPR-PTHYSCLVDLLGRAG 480


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  414 bits (1063), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/573 (39%), Positives = 329/573 (57%), Gaps = 36/573 (6%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLA-- 97
           L   L+D Y KC  + YA  + + MP R+ V+W++++  +   +   +   +F  MLA  
Sbjct: 275 LGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG 334

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
           L  L P     AS ++AC SL   R+G+Q+HA    S    D    +SL+ MYAK     
Sbjct: 335 LCFLSPT--SIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK----- 387

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
                                     +G    A+ +F++  V++   ++ALVSG VQ+  
Sbjct: 388 --------------------------AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGR 421

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             +AF  F +M+   V+  D   + S++ AC++ A L+ G+  HG VI  G  S   I N
Sbjct: 422 AEEAFLVFKKMQACNVE-PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICN 480

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           A++DMYAKC  I  ++ +F  M  +D+VSW ++I G   HG  +E  AL+ EM + G  P
Sbjct: 481 ALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP 540

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           + VTF+ L+ ACSH GLV +G+  F  M   YG+TP ++HY C++DLLSR G LDEA   
Sbjct: 541 DGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF 600

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           I++MP   D   W ALL AC+ ++N ++G +V+  +  L PE   +++LLSN+Y++A  +
Sbjct: 601 IQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRF 660

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
              ++VR +  V   KK PG S+IE     H F  G+ SHP   EI+  L  +   +K+ 
Sbjct: 661 DEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKL 720

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GY PDTS VL D+E++EKE+ L  HSE+LA+AYG+L       + V KNLRVCGDCH V+
Sbjct: 721 GYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVI 780

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K IS + +R I+VRDA R+HHFK+G+CSC DFW
Sbjct: 781 KHISLLKRRAIIVRDANRFHHFKNGQCSCGDFW 813



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 192/442 (43%), Gaps = 77/442 (17%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H   I  GL     +   L+D Y KC  +  A H+   MP RD V+W ++L  Y   
Sbjct: 145 RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHH 204

Query: 83  NLPQKTIS-IFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL-------- 133
            +    ++ + S  + + +L+P+     +L+      GA   G  VHA  +         
Sbjct: 205 GMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRN 264

Query: 134 --SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
             S   D  ++ ++L+DMYAKCG    AR VFD++  +N V+W+                
Sbjct: 265 SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS---------------- 308

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
                          AL+ G V       AF  F  M  +G+  + P  ++S + ACA+ 
Sbjct: 309 ---------------ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASL 353

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
             L +G+Q+H L+   G  + L   N+++ MYAK   I  A  +F  M  KD VS+++++
Sbjct: 354 DHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALV 413

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G  Q+G+AEE   ++ +M +  V+P+  T V LI ACSH+  +  GR    S+I   G+
Sbjct: 414 SGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GL 472

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMP----------------------------- 402
                    L+D+ ++ G +D +  +   MP                             
Sbjct: 473 ASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLE 532

Query: 403 -----FEPDEPTWAALLSACKH 419
                F PD  T+  LLSAC H
Sbjct: 533 MNNLGFPPDGVTFICLLSACSH 554



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/379 (22%), Positives = 172/379 (45%), Gaps = 58/379 (15%)

Query: 57  AHHLLEEMPQRDHVSWASILTAYNQAN--LPQKTISIFSTMLALDKLQPDHFVFASLVKA 114
           AHHL +++P  D  ++  ++ AY+ ++       + ++  ML   ++ P+++ F   +KA
Sbjct: 76  AHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLR-HRVAPNNYTFPFALKA 134

Query: 115 CGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSW 174
           C +L     G+ +H   + +    D  V ++L+DMY KC    +A  +F ++  ++ V+W
Sbjct: 135 CSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAW 194

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
            AML+ YA  G                  ++   V+ L+  + ++        +R     
Sbjct: 195 NAMLAGYAHHG------------------MYHHAVAHLLSMQMQMH------RLRPNAST 230

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL--------------FISNAIV 280
           +V  L L +  GA A       G  +H   I     +CL               +  A++
Sbjct: 231 LVALLPLLAQQGALAQ------GTSVHAYRI----RACLHSNRNSKSKLTDGVLLGTALL 280

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG---VKP 337
           DMYAKC  ++ A+ +F  M  ++ V+W+++I G     +  +   L+  M++ G   + P
Sbjct: 281 DMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSP 340

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
             +     + AC+ +  +  G +L  +++   G+   L     LL + +++G +D+A  L
Sbjct: 341 TSIA--SALRACASLDHLRMGEQL-HALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 397

Query: 398 IKAMPFEPDEPTWAALLSA 416
              M  + D  +++AL+S 
Sbjct: 398 FDEMAVK-DTVSYSALVSG 415



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 111/249 (44%), Gaps = 21/249 (8%)

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR--NEIDAFYSFIEMRREGV---DIVDP 238
           SG    A  +F+Q P  ++  +  L+     S      D  + +  M R  V   +   P
Sbjct: 70  SGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNYTFP 129

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
             L     AC+  A    G+ IH   I  G ++ LF+S A++DMY KC+ +  A  IF  
Sbjct: 130 FALK----ACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFAT 185

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLA--LYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
           M  +D+V+W +++ G A HG     +A  L  +M    ++PN  T V L+   +  G + 
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 357 KGRKLFKSMIE---------DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           +G  +    I             +T  +   T LLD+ ++ G L  A  +  AMP   +E
Sbjct: 246 QGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPAR-NE 304

Query: 408 PTWAALLSA 416
            TW+AL+  
Sbjct: 305 VTWSALIGG 313


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/605 (34%), Positives = 348/605 (57%), Gaps = 9/605 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLID---AYGKCDLVQYAHHLLEEMPQ 66
           L+ C++ +    +K +HA+++K GL Q        +    +    D + YA  + +   +
Sbjct: 21  LQRCSKQE---ELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDR 77

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
            D   W  ++  ++ ++ P++++ ++  ML       + + F SL+KAC +L A     Q
Sbjct: 78  PDTFLWNLMIRGFSCSDEPERSLLLYQRMLC-SSAPHNAYTFPSLLKACSNLSAFEETTQ 136

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +HA      + +D    +SL++ YA  G    A  +FD I   + VSW +++  Y ++G+
Sbjct: 137 IHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGK 196

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
              A+ +F +   +N   WT ++SG VQ+    +A   F EM+   V+  D + L++ + 
Sbjct: 197 MDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVE-PDNVSLANALS 255

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           ACA    LE GK IH  +          +   ++DMYAKC ++  A ++F  +++K V +
Sbjct: 256 ACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQA 315

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           WT++I G A HG   E ++ + EM   G+KPN +TF  ++ ACS+ GLV +G+ +F SM 
Sbjct: 316 WTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSME 375

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
            DY + P+++HY C++DLL R+G LDEA+  I+ MP +P+   W ALL AC+ H+N E+G
Sbjct: 376 RDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELG 435

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
             +   L+++ P     Y+  +N++A    W   ++ R+LM    V K PG S I     
Sbjct: 436 EEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGT 495

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDM-EQKEKERQLFWHSER 545
           +H F AG+ SHP  ++I      +  +++  GYVP+   +L D+ +  E+E  +  HSE+
Sbjct: 496 THEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEK 555

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+ YGL+K+ PGT++R++KNLRVC DCH V K+IS+I KR+IV+RD TR+HHF+DGKCS
Sbjct: 556 LAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCS 615

Query: 606 CNDFW 610
           C D+W
Sbjct: 616 CGDYW 620


>gi|356545004|ref|XP_003540936.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Glycine max]
          Length = 629

 Score =  414 bits (1063), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 221/604 (36%), Positives = 349/604 (57%), Gaps = 7/604 (1%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           LH+ R   +H     V+++H   IK    Q   +   L+  Y K + + +A  L      
Sbjct: 33  LHKNRKNPKH-----VQSIHCHAIKTRTSQDPFVAFELLRVYCKVNYIDHAIKLFRCTQN 87

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
            +   + S++  +         I++F  M+    L  D++   +++KAC    A   GK+
Sbjct: 88  PNVYLYTSLIDGFVSFGSYTDAINLFCQMVRKHVL-ADNYAVTAMLKACVLQRALGSGKE 146

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           VH   + S    D  +   LV++Y KCG+  +AR +FD +  ++ V+ T M+ +    G 
Sbjct: 147 VHGLVLKSGLGLDRSIALKLVELYGKCGVLEDARKMFDGMPERDVVACTVMIGSCFDCGM 206

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
            ++A+E+F +   R+   WT ++ GLV++         F EM+ +GV+  + +    ++ 
Sbjct: 207 VEEAIEVFNEMGTRDTVCWTMVIDGLVRNGEFNRGLEVFREMQVKGVE-PNEVTFVCVLS 265

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           ACA    LELG+ IH  +   G E   F++ A+++MY++C DI  A+ +F  +R KDV +
Sbjct: 266 ACAQLGALELGRWIHAYMRKCGVEVNRFVAGALINMYSRCGDIDEAQALFDGVRVKDVST 325

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           + S+I G A HG++ E + L+ EM+   V+PN +TFVG++ ACSH GLV  G ++F+SM 
Sbjct: 326 YNSMIGGLALHGKSIEAVELFSEMLKERVRPNGITFVGVLNACSHGGLVDLGGEIFESME 385

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             +GI P ++HY C++D+L R G L+EA + I  M  E D+    +LLSACK H+N  MG
Sbjct: 386 MIHGIEPEVEHYGCMVDILGRVGRLEEAFDFIGRMGVEADDKMLCSLLSACKIHKNIGMG 445

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
            +VA  L      D  S+I+LSN YAS   W + ++VR+ M    + KEPG S IE    
Sbjct: 446 EKVAKLLSEHYRIDSGSFIMLSNFYASLGRWSYAAEVREKMEKGGIIKEPGCSSIEVNNA 505

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            H F++G+  HP +  I++ L EL+   K  GY+P T   LHD++ ++KE  L  HSERL
Sbjct: 506 IHEFFSGDLRHPERKRIYKKLEELNYLTKFEGYLPATEVALHDIDDEQKELALAVHSERL 565

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+ YGL+ +   T LRV KNLR+C DCH ++K+I++IT+R+IVVRD  R+HHF++G+CSC
Sbjct: 566 AICYGLVSTEAYTTLRVGKNLRICDDCHAMIKLIAKITRRKIVVRDRNRFHHFENGECSC 625

Query: 607 NDFW 610
            D+W
Sbjct: 626 KDYW 629


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/592 (37%), Positives = 336/592 (56%), Gaps = 41/592 (6%)

Query: 19   ALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
            A +VKTL+        H YG     L+D Y KC  ++ A    E +   D + W+ +++ 
Sbjct: 656  ACSVKTLY----DTERHVYG----ALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISR 707

Query: 79   YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
            Y Q N  ++   +F  M+    + P+ F  +S+++AC ++    LGKQ+H   +      
Sbjct: 708  YAQCNQNEQAFELFIRMMR-SSVSPNEFSLSSVLQACANMPLLDLGKQIHNHAIKIGHES 766

Query: 139  DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
            +  V ++L+D+YAKC    ++  +F S++  N VSW  ++  Y++SG  + A+ +F    
Sbjct: 767  ELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFR--- 823

Query: 199  VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
                                        EMR   V     +  SS++ ACA+ A +    
Sbjct: 824  ----------------------------EMRAASVPSTQ-VTYSSVLRACASTASINHVG 854

Query: 259  QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
            Q+H L+    + S   +SN+++D YAKC  I  A++IF  ++  D+VSW +II G A HG
Sbjct: 855  QVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHG 914

Query: 319  QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
            QA     L+D M    +K N++TFV L+  C   GLV +G  LF SM  D+GI PS++HY
Sbjct: 915  QAAMAQELFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHY 974

Query: 379  TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
            TC++ LL R+G L++A N I  +P  P    W ALLS+C  H+N E+G   A  +L ++P
Sbjct: 975  TCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEP 1034

Query: 439  EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
            +D ++Y+LLSN+Y++A     V+  RK M  + V+KEPG S++E     H F  G   HP
Sbjct: 1035 QDETTYVLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWVEIKGEVHAFSVGSEDHP 1094

Query: 499  LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
                I  +L  L+ +  R GYVPDT  VLHD+E+++K R L+ HSERLA+AYGL+ + PG
Sbjct: 1095 CMRVINAMLEWLNLKAIREGYVPDTDEVLHDLEEEQKVRMLWVHSERLALAYGLVMTPPG 1154

Query: 559  TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
              +R++KNLR C DCH + K+IS+I K+EI+VRD  R+HHF++G CSC D+W
Sbjct: 1155 HPIRIMKNLRSCLDCHAIFKVISKIVKQEIIVRDINRFHHFEEGTCSCGDYW 1206



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 137/446 (30%), Positives = 224/446 (50%), Gaps = 51/446 (11%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA   KLG  +   + + LIDAY  C +V  A  + + +  +D V+W ++++ Y++ + 
Sbjct: 553 VHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDC 612

Query: 85  PQKTISIFSTM-LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
           P+ T+ IFS M +A+ KL P  F   S+++A   L +  LGK +HAC V + +  +  V 
Sbjct: 613 PENTLQIFSKMRVAVSKLNP--FALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVY 670

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
            +L+DMYAKC                               G  +DA   FE     ++ 
Sbjct: 671 GALLDMYAKC-------------------------------GNIEDARLAFEMVTNDDVI 699

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
           LW+ ++S   Q      AF  FI M R  V   +   LSS++ ACAN  +L+LGKQIH  
Sbjct: 700 LWSLMISRYAQCNQNEQAFELFIRMMRSSVS-PNEFSLSSVLQACANMPLLDLGKQIHNH 758

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
            I +G+ES LF+ NA++D+YAKCSD+ ++ +IF  +R  + VSW +IIVG ++ G  E  
Sbjct: 759 AIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAA 818

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACS------HVGLVGKGRKLFKSMIEDYGITPSLQH 377
           L+++ EM +A V   +VT+  ++ AC+      HVG V         +IE          
Sbjct: 819 LSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQV-------HCLIEKSTFNSDTIV 871

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--S 435
              L+D  ++ G + +A  + + +  E D  +W A++S    H    M   + + +   S
Sbjct: 872 SNSLIDSYAKCGCIRDAREIFETLK-ECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNS 930

Query: 436 LKPEDPSSYILLSNVYASAAMWQHVS 461
           +K  D +   LLS   ++  + Q +S
Sbjct: 931 IKANDITFVALLSVCGSTGLVSQGLS 956



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/467 (23%), Positives = 214/467 (45%), Gaps = 42/467 (8%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPL--PNTLIDAYGKCDLVQYAHHLLEE 63
           Y   L+ C     A   + +H  +++ G      L   N L++ Y K      AH + + 
Sbjct: 431 YARLLQGCVARGDARGGRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDG 490

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           +P+R+ VS+ +++  +      ++  ++F   L  +  + + FV  +++K   ++    L
Sbjct: 491 LPERNMVSFVTLVQGHALRGEFEEASALFQR-LRWEGHEVNQFVLTTVLKLVVAMDTLGL 549

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
              VHAC        +  V S+L+D Y+ CG+ ++AR VFD I  K++V+WTAM+S Y+ 
Sbjct: 550 AWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSE 609

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           +   ++ ++IF +                                 R  V  ++P  L+S
Sbjct: 610 NDCPENTLQIFSKM--------------------------------RVAVSKLNPFALTS 637

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++ A    + + LGK IH   +   Y++   +  A++DMYAKC +I  A+  F  +   D
Sbjct: 638 VLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDD 697

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           V+ W+ +I   AQ  Q E+   L+  M+ + V PNE +   ++ AC+++ L+  G+++  
Sbjct: 698 VILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHN 757

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
             I+  G    L     L+DL ++   ++ +  +  ++  + +E +W  ++         
Sbjct: 758 HAIK-IGHESELFVGNALIDLYAKCSDMESSLEIFSSL-RDVNEVSWNTIIVGYSKSGFG 815

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVY---ASAAMWQHVSKVRKLM 467
           E    V   + +     PS+ +  S+V    AS A   HV +V  L+
Sbjct: 816 EAALSVFREMRAAS--VPSTQVTYSSVLRACASTASINHVGQVHCLI 860



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 106/256 (41%), Gaps = 49/256 (19%)

Query: 6    YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
            Y   LR CA       V  +H  I K   +    + N+LID+Y KC  ++ A  + E + 
Sbjct: 837  YSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLK 896

Query: 66   QRDHVSWASILTAY---NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
            + D VSW +I++ Y    QA + Q+       M++ + ++ +   F +L+  CGS     
Sbjct: 897  ECDLVSWNAIISGYAVHGQAAMAQELFD----MMSKNSIKANDITFVALLSVCGS----- 947

Query: 123  LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-----WTAM 177
                                           GL +   ++FDS++L + +      +T +
Sbjct: 948  ------------------------------TGLVSQGLSLFDSMRLDHGIEPSMEHYTCI 977

Query: 178  LSAYARSGRKKDAMEIFEQAP-VRNLFLWTALVSGLVQSRN-EIDAFYSFIEMRREGVDI 235
            +    R+GR  DA+      P   +  +W AL+S  +  +N E+  F +   +  E  D 
Sbjct: 978  VRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDE 1037

Query: 236  VDPLVLSSIVGACANF 251
               ++LS++  A  + 
Sbjct: 1038 TTYVLLSNMYSAAGSL 1053


>gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
 gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 606

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/592 (37%), Positives = 334/592 (56%), Gaps = 39/592 (6%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL--EEMPQR--DHVSWASILTAYN 80
           +H  I+KLGLH    +               YA   L   E   R  D   + +++ AY 
Sbjct: 48  IHTHILKLGLHNNPLVLTKFASISSLIHATDYAASFLFSAEADTRLYDAFLFNTLIRAYA 107

Query: 81  QANLPQ-KTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
           Q    + K ++++  ML  D + P+ F +  ++KAC  L    LG+ VH   V   F  D
Sbjct: 108 QTGHSKDKALALYGIMLH-DAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCD 166

Query: 140 DVVKSSLVDMYAKC-GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
             V++++V MY+ C G  N+AR VFD +   +SV+                         
Sbjct: 167 IHVQNTMVHMYSCCAGGINSARKVFDEMPKSDSVT------------------------- 201

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
                 W+A++ G  +     +A   F EM+   V   D + + S++ AC +   LELGK
Sbjct: 202 ------WSAMIGGYARVGRSTEAVALFREMQMAEV-CPDEITMVSMLSACTDLGALELGK 254

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
            I   +        + +SNA++DM+AKC DI  A  +F  M  K +VSWTS+IVG A HG
Sbjct: 255 WIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMHG 314

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
           + +E   L++EM S+GV P++V F+GL+ ACSH GLV +GR+ F SM++ Y + P ++HY
Sbjct: 315 RGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEHY 374

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
            C++D+  R+G + EA   ++ MP EP+      L+SAC+ H   ++G ++   L+  +P
Sbjct: 375 GCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMKHEP 434

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
              S+Y+LLSN+YA    W+  +K+R++M V  +KK PG + IE     + F AG+ SH 
Sbjct: 435 LHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGDKSHK 494

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
              EI+E++ E+  EMK+ GY P TS VL D+ +++KE  L  HSE+LA+A+GLL++ PG
Sbjct: 495 QHKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKLAIAFGLLRTPPG 554

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           T +R+VKNLRVC DCH   K IS+I  REI++RD  R+HHFK G+CSC DFW
Sbjct: 555 TPIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKSGQCSCGDFW 606



 Score =  105 bits (263), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 170/376 (45%), Gaps = 55/376 (14%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-DLVQYAHHLLEEM 64
           Y   L+ CA  ++    +T+H  ++K G      + NT++  Y  C   +  A  + +EM
Sbjct: 135 YPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAGGINSARKVFDEM 194

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           P+ D V+W++++  Y +     + +++F  M  + ++ PD     S++ AC  LGA  LG
Sbjct: 195 PKSDSVTWSAMIGGYARVGRSTEAVALFREM-QMAEVCPDEITMVSMLSACTDLGALELG 253

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           K + A            V ++L+DM+AKCG  + A  +F ++  K  VSWT+++   A  
Sbjct: 254 KWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVSWTSVIVGMAMH 313

Query: 185 GRKKDAMEIFEQ------AP--VRNLFLWTALV-SGLVQSRNE--------------IDA 221
           GR ++A  +FE+      AP  V  + L +A   SGLV+   E              I+ 
Sbjct: 314 GRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMMKKYKLVPKIEH 373

Query: 222 FYSFIEMR------REGVDIV-------DPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
           +   ++M       +E ++ V       +P++L ++V AC      +LG++I  L++   
Sbjct: 374 YGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLGEKITKLLMK-- 431

Query: 269 YESCLFISNAIV--DMYAKC---SDIIAAKDIFGRMRRKDVVSWTSI---------IVGT 314
               L  SN ++  ++YAK          +++      K V   T I         + G 
Sbjct: 432 -HEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNEIYEFVAGD 490

Query: 315 AQHGQAEETLALYDEM 330
             H Q +E   + DEM
Sbjct: 491 KSHKQHKEIYEMVDEM 506


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/634 (35%), Positives = 347/634 (54%), Gaps = 66/634 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLH--------------QYGPLPNT------------ 43
           L+ CA+ +  +  + +H  ++KLG                Q G L +             
Sbjct: 72  LKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHV 131

Query: 44  -----LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                LI  Y     +  A  L +E+  +D VSW ++++ Y +    ++ + ++  M+  
Sbjct: 132 VSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKT 191

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           + ++PD     ++V AC   G+  LG+Q+H+      F  +  + + L+D+Y+KCG    
Sbjct: 192 N-VKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVET 250

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A  +F  +  K+ +SW  ++  +      K+A+ +F+                       
Sbjct: 251 ACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQ----------------------- 287

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL--GYESCLFIS 276
                   EM R G    D  +LS ++ ACA+   +++G+ IH  +     G  +   + 
Sbjct: 288 --------EMLRSGESPNDVTMLS-VLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLL 338

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
            +++DMYAKC DI AAK +F  M  + + SW ++I G A HG+A     L+ +M   G+ 
Sbjct: 339 TSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGID 398

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
           P+++TFVGL+ ACSH G++  GR +F+SM +DY ITP L+HY C++DLL   G   EA+ 
Sbjct: 399 PDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKE 458

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           +I+ MP EPD   W +LL ACK H N E+G   A +L+ ++PE+P SY+LLSN+YA+A  
Sbjct: 459 MIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEPENPGSYVLLSNIYATAGR 518

Query: 457 WQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKR 516
           W  V+K+R L++   +KK PG S IE     H F  G+  HP   EI+ +L E++  M+ 
Sbjct: 519 WDQVAKIRTLLNDKGIKKAPGCSSIEIDSVVHEFIIGDKFHPRNREIYRMLEEMEMLMEE 578

Query: 517 RGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIV 576
            G+VPDTS VL +ME++ KE  L  HSE+LA+A+GL+ + PGT L +VKNLRVC +CH  
Sbjct: 579 TGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEA 638

Query: 577 MKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            K+IS+I KREI+ RD TR H  KDG  SC+D+W
Sbjct: 639 TKLISKIYKREIIARDRTRLHLLKDGVWSCHDYW 672


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/604 (35%), Positives = 348/604 (57%), Gaps = 37/604 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C   +     + +H  +IK        L   LI  Y KCD +  A  + +EMPQ++ 
Sbjct: 97  LNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNV 156

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC-GSLGATRLGKQVH 128
           VSW ++++AY+Q     + +++F  ML  D  +P+HF FA+++ +C GSLG    G+Q+H
Sbjct: 157 VSWTAMISAYSQRGFAFEALNLFVEMLRSDT-EPNHFTFATILTSCYGSLG-FETGRQIH 214

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           +  +   +     V SSL+DMYAK                               SGR  
Sbjct: 215 SIAIKRNYESHMFVGSSLLDMYAK-------------------------------SGRIC 243

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           DA  +F   P R++   TA++SG  Q   + +A   F +++ EG++  + +  +S++ A 
Sbjct: 244 DAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMN-SNSVTYASVLTAL 302

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           +  A L  GKQ+H  V+  G  S + + N+++DMY+KC ++  A+ IF  M  +  +SW 
Sbjct: 303 SGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWN 362

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           +++VG ++HG A E L L+  M     VKP+ +T++ ++  CSH  L   G ++F +M+ 
Sbjct: 363 AMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVN 422

Query: 368 DY-GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
              GI P + HY C++DLL R+G ++EA + IK MPF P    W +LL +C+ H + E+G
Sbjct: 423 GKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIG 482

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
             V   LL L+PE+  +Y++LSN+YASA  W+ +  +R LM    V KEPG S++E  + 
Sbjct: 483 IIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQI 542

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            H F+A + +HP ++E+ + + EL  + K  GYVPD S VL+D+++++KE+ L  HSE+L
Sbjct: 543 VHTFHASDHTHPRREEVAKKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKL 602

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+A+GL+ +  GT +RV+KNLR+C DCH   K +SR+  R +++RD  R+H+   G CSC
Sbjct: 603 ALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSC 662

Query: 607 NDFW 610
            D+W
Sbjct: 663 GDYW 666



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/364 (27%), Positives = 168/364 (46%), Gaps = 66/364 (18%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           + +++  C S  A R G++VH   + + +     +++ L+ +Y KC    +AR +FD + 
Sbjct: 93  YDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMP 152

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            KN VSWTAM+SAY++ G   +A+ +                               F+E
Sbjct: 153 QKNVVSWTAMISAYSQRGFAFEALNL-------------------------------FVE 181

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M R   +  +    ++I+ +C      E G+QIH + I   YES +F+ ++++DMYAK  
Sbjct: 182 MLRSDTE-PNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSG 240

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            I  A  +F  +  +DVV+ T+II G AQ G  EE L L+ ++   G+  N VT+  ++ 
Sbjct: 241 RICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLT 300

Query: 348 ACSHVGLVGKGRK---------------LFKSMIEDYG----------ITPSLQHYTC-- 380
           A S +  +  G++               L  S+I+ Y           I  S+   TC  
Sbjct: 301 ALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCIS 360

Query: 381 ---LLDLLSRSGHLDEAENLIKAMPFE----PDEPTWAALLSACKHHRNTEMGTRVANHL 433
              +L   S+ G   E   L K M  E    PD  T+ A+LS C H +  +MG  +  ++
Sbjct: 361 WNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNM 420

Query: 434 LSLK 437
           ++ K
Sbjct: 421 VNGK 424



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 96/190 (50%), Gaps = 10/190 (5%)

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           E++ EG D        +I+  C +   +  G+++H  +I   Y   +++   ++ +Y KC
Sbjct: 87  EVKFEGYD--------TILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKC 138

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             +  A+++F  M +K+VVSWT++I   +Q G A E L L+ EM+ +  +PN  TF  ++
Sbjct: 139 DCLGDAREMFDEMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATIL 198

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            +C        GR++    I+       +   + LLD+ ++SG + +A  +   +P E D
Sbjct: 199 TSCYGSLGFETGRQIHSIAIKR-NYESHMFVGSSLLDMYAKSGRICDAHGVFHCLP-ERD 256

Query: 407 EPTWAALLSA 416
                A++S 
Sbjct: 257 VVACTAIISG 266


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/591 (36%), Positives = 331/591 (56%), Gaps = 38/591 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH  ++  GL     + N L+  YGK   +  +  +L +MP+RD V+W +++  Y + 
Sbjct: 382 RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAED 441

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKAC---GSLGATRLGKQVHACFVLSPFCDD 139
             P K ++ F TM  ++ +  ++    S++ AC   G L     GK +HA  V + F  D
Sbjct: 442 EDPDKALAAFQTM-RVEGVSSNYITVVSVLSACLLPGDL--LERGKPLHAYIVSAGFESD 498

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
           + VK+SL+ MYAKCG  ++++ +F+ +  +N ++W AML+A A  G  ++ +++  +   
Sbjct: 499 EHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSK--- 555

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                       MR  GV + D    S  + A A  AVLE G+Q
Sbjct: 556 ----------------------------MRSFGVSL-DQFSFSEGLSAAAKLAVLEEGQQ 586

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           +HGL + LG+E   FI NA  DMY+KC +I     +      + + SW  +I    +HG 
Sbjct: 587 LHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGY 646

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
            EE  A + EM+  G+KP  VTFV L+ ACSH GLV KG   +  +  D+G+ P+++H  
Sbjct: 647 FEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCI 706

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++DLL RSG L EAE  I  MP +P++  W +LL++CK H N + G + A +L  L+PE
Sbjct: 707 CVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPE 766

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           D S Y+L SN++A+   W+ V  VRK M    +KK+   S+++       F  G+ +HP 
Sbjct: 767 DDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQ 826

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
             EI+  L ++   +K  GYV DTS  L D ++++KE  L+ HSERLA+AY L+ +  G+
Sbjct: 827 TMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGS 886

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +R+ KNLR+C DCH V K +SR+  R IV+RD  R+HHF+ G CSC D+W
Sbjct: 887 TVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 937



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 181/399 (45%), Gaps = 36/399 (9%)

Query: 27  AQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQ 86
            Q++K GL     + N+LI   G    V YA+++ ++M +RD +SW SI  AY Q    +
Sbjct: 184 GQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIE 243

Query: 87  KTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSL 146
           ++  IFS M      + +    ++L+   G +   + G+ +H            VVK   
Sbjct: 244 ESFRIFSLMRRFHD-EVNSTTVSTLLSVLGHVDHQKWGRGIHGL----------VVKMGF 292

Query: 147 VDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWT 206
             +   C                       +L  YA +GR  +A  +F+Q P ++L  W 
Sbjct: 293 DSVVCVC---------------------NTLLRMYAGAGRSVEANLVFKQMPTKDLISWN 331

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
           +L++  V     +DA      M   G   V+ +  +S + AC      E G+ +HGLV+ 
Sbjct: 332 SLMASFVNDGRSLDALGLLCSMISSGKS-VNYVTFTSALAACFTPDFFEKGRILHGLVVV 390

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
            G      I NA+V MY K  ++  ++ +  +M R+DVV+W ++I G A+    ++ LA 
Sbjct: 391 SGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAA 450

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVG-LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385
           +  M   GV  N +T V ++ AC   G L+ +G+ L  + I   G          L+ + 
Sbjct: 451 FQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPL-HAYIVSAGFESDEHVKNSLITMY 509

Query: 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           ++ G L  +++L   +    +  TW A+L+A  HH + E
Sbjct: 510 AKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHHGHGE 547



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 170/370 (45%), Gaps = 36/370 (9%)

Query: 48  YGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV 107
           Y K   V+ A HL + MP R+ VSW ++++   +  L  + +  F  M  L  ++P  FV
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLG-IKPSSFV 60

Query: 108 FASLVKACGSLGAT-RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
            ASLV ACG  G+  R G QVH     S    D  V ++++ +Y   GL + +R VF+ +
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
             +N VSWT+++  Y+  G  ++ ++I++                               
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKG------------------------------ 150

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            MR EGV   +   +S ++ +C       LG+QI G V+  G ES L + N+++ M    
Sbjct: 151 -MRGEGVG-CNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSM 208

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
            ++  A  IF +M  +D +SW SI    AQ+G  EE+  ++  M     + N  T   L+
Sbjct: 209 GNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLL 268

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
               HV     GR +   ++   G    +     LL + + +G   EA  + K MP   D
Sbjct: 269 SVLGHVDHQKWGRGI-HGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMP-TKD 326

Query: 407 EPTWAALLSA 416
             +W +L+++
Sbjct: 327 LISWNSLMAS 336



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 176/392 (44%), Gaps = 35/392 (8%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  + K GL     +   ++  YG   LV  +  + EEMP R+ VSW S++  Y+    
Sbjct: 81  VHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGE 140

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P++ I I+  M   + +  +    + ++ +CG L    LG+Q+    V S       V++
Sbjct: 141 PEEVIDIYKGMRG-EGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVEN 199

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SL+ M    G  + A  +FD +  ++++S                               
Sbjct: 200 SLISMLGSMGNVDYANYIFDQMSERDTIS------------------------------- 228

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W ++ +   Q+ +  ++F  F  MRR   D V+   +S+++    +    + G+ IHGLV
Sbjct: 229 WNSIAAAYAQNGHIEESFRIFSLMRRFH-DEVNSTTVSTLLSVLGHVDHQKWGRGIHGLV 287

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           + +G++S + + N ++ MYA     + A  +F +M  KD++SW S++      G++ + L
Sbjct: 288 VKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDAL 347

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            L   M+S+G   N VTF   + AC       KGR +   ++   G+  +      L+ +
Sbjct: 348 GLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGR-ILHGLVVVSGLFYNQIIGNALVSM 406

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             + G + E+  ++  MP   D   W AL+  
Sbjct: 407 YGKIGEMSESRRVLLQMP-RRDVVAWNALIGG 437



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 127/250 (50%), Gaps = 4/250 (1%)

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           Y + GR K A  +F+  PVRN   W  ++SG+V+    ++    F +M   G+      V
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIK-PSSFV 60

Query: 241 LSSIVGACA-NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
           ++S+V AC  + ++   G Q+HG V   G  S +++S AI+ +Y     +  ++ +F  M
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
             ++VVSWTS++VG +  G+ EE + +Y  M   GV  NE +   +I +C  +     GR
Sbjct: 121 PDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGR 180

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           ++   +++  G+   L     L+ +L   G++D A  +   M  E D  +W ++ +A   
Sbjct: 181 QIIGQVVKS-GLESKLAVENSLISMLGSMGNVDYANYIFDQMS-ERDTISWNSIAAAYAQ 238

Query: 420 HRNTEMGTRV 429
           + + E   R+
Sbjct: 239 NGHIEESFRI 248



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 29/133 (21%), Positives = 59/133 (44%), Gaps = 1/133 (0%)

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY K   +  A+ +F  M  ++ VSW +++ G  + G   E +  + +M   G+KP+   
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
              L+ AC   G + +        +   G+   +   T +L L    G +  +  + + M
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEM 120

Query: 402 PFEPDEPTWAALL 414
           P + +  +W +L+
Sbjct: 121 P-DRNVVSWTSLM 132


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  413 bits (1062), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/601 (36%), Positives = 329/601 (54%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA        + +H  ++K        +   L+D Y K  L+  A  + + +PQRD 
Sbjct: 310 LKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDL 369

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V W ++++  +      + +S+F  M   +    +    A+++K+  SL A    +QVHA
Sbjct: 370 VLWNALISGCSHGAQHAEALSLFCRMRK-EGFDVNRTTLAAVLKSTASLEAISDTRQVHA 428

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 F  D  V + L+D Y KC   N A                              
Sbjct: 429 LAEKLGFLSDSHVVNGLIDSYWKCDCLNYA------------------------------ 458

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
              +FE+    ++  +T++++ L Q  +  DA   F+EM R+G+D  DP VLSS++ ACA
Sbjct: 459 -YRVFEKHGSYDIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLD-PDPFVLSSLLNACA 516

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           + +  E GKQ+H  +I   + S +F  NA+V  YAKC  I  A   F  +  K VVSW++
Sbjct: 517 SLSAYEQGKQVHAHLIKRQFMSDVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSA 576

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G AQHG  +  L ++  MV   + PN +T   ++ AC+H GLV + ++ F SM E +
Sbjct: 577 MIGGLAQHGHGKRALDVFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMF 636

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI  + +HY C++DLL R+G LD+A  L+ +MPF+ +   W ALL+A + HR+ E+G   
Sbjct: 637 GIERTEEHYACMIDLLGRAGKLDDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLA 696

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  L  L+PE   +++LL+N YASA MW  V+KVRKLM   +VKKEP  S++E     H 
Sbjct: 697 AEKLFILEPEKSGTHVLLANTYASAGMWDDVAKVRKLMKDSKVKKEPAMSWVELKDKVHT 756

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F  G+ SHP   +I+  L EL   M + GYVP+    LHD+++ EKE  L  HSERLAVA
Sbjct: 757 FIVGDKSHPRARDIYAKLDELGDLMTKAGYVPNVEVDLHDVDKNEKELLLSHHSERLAVA 816

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + L+ +  G  +RV KNLR+C DCH   K IS I  REI++RD  R+HHF+DG CSC D+
Sbjct: 817 FALISTPAGAPIRVKKNLRICRDCHAAFKFISDIVSREIIIRDINRFHHFRDGACSCRDY 876

Query: 610 W 610
           W
Sbjct: 877 W 877



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 123/396 (31%), Positives = 200/396 (50%), Gaps = 41/396 (10%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA ++K GL  +    N L+  Y KC L   A  + +E+P   HVSW+S++TAY+   +
Sbjct: 26  IHAHLLKSGL--FAVFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAM 83

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P+  +  F +M +   ++ + FV   ++K     G    G Q+HA  + +    D  V +
Sbjct: 84  PRDALGAFRSMRSC-SVRCNEFVLPVVLKCAPDAG---FGTQLHALAMATGLGGDIFVAN 139

Query: 145 SLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           +LV MY   G  + AR VFD     +N+VSW  ++SAY ++ R   A+++F +       
Sbjct: 140 ALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGE------- 192

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
               +V G VQ  NE                       S +V AC     LE G+++H +
Sbjct: 193 ----MVWGGVQP-NEFG--------------------FSCVVNACTGSRDLEAGRKVHAM 227

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           VI  GY+  +F +NA+VDMY+K  DI  A  +FG++   DVVSW + I G   HG  +  
Sbjct: 228 VIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHA 287

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           L L  +M S+G+ PN  T   ++ AC+  G    GR++   M++    + +   +  L+D
Sbjct: 288 LELLLQMKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG-LVD 346

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           + ++ G LD+A+ +   +P + D   W AL+S C H
Sbjct: 347 MYAKHGLLDDAKKVFDWIP-QRDLVLWNALISGCSH 381



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 97/398 (24%), Positives = 189/398 (47%), Gaps = 35/398 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA +I+ G  +     N L+D Y K   ++ A  +  ++P+ D VSW + ++     
Sbjct: 222 RKVHAMVIRTGYDKDVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLH 281

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              Q  + +   M +   L P+ F  +S++KAC   GA  LG+Q+H   V +    D+ +
Sbjct: 282 GHDQHALELLLQMKS-SGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYI 340

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
              LVDMYAK GL ++A+ VFD I  ++ V W A++S  +   +  +A+ +         
Sbjct: 341 AFGLVDMYAKHGLLDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSL--------- 391

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                 F  MR+EG D V+   L++++ + A+   +   +Q+H 
Sbjct: 392 ----------------------FCRMRKEGFD-VNRTTLAAVLKSTASLEAISDTRQVHA 428

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L   LG+ S   + N ++D Y KC  +  A  +F +    D++++TS+I   +Q    E+
Sbjct: 429 LAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGED 488

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L+ EM+  G+ P+      L+ AC+ +    +G+++   +I+   ++        L+
Sbjct: 489 AIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDVFAG-NALV 547

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
              ++ G +++A+     +P E    +W+A++     H
Sbjct: 548 YTYAKCGSIEDADLAFSGLP-EKGVVSWSAMIGGLAQH 584



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 154/347 (44%), Gaps = 44/347 (12%)

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           V ++ L+  Y+KC LP +AR VFD I     VSW+++++AY+ +   +DA+         
Sbjct: 38  VFRNHLLSFYSKCRLPGSARRVFDEIPDPCHVSWSSLVTAYSNNAMPRDAL--------- 88

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
                               AF S         + V P+VL      CA  A    G Q+
Sbjct: 89  -------------------GAFRSMRSCSVRCNEFVLPVVLK-----CAPDA--GFGTQL 122

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQ 319
           H L +A G    +F++NA+V MY     +  A+ +F      ++ VSW  ++    ++ +
Sbjct: 123 HALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDR 182

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
               + ++ EMV  GV+PNE  F  ++ AC+    +  GRK+  +M+   G    +    
Sbjct: 183 CSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKV-HAMVIRTGYDKDVFTAN 241

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
            L+D+ S+ G +  A  +   +P E D  +W A +S C  H + +    +   LL +K  
Sbjct: 242 ALVDMYSKLGDIRMAAVVFGKVP-ETDVVSWNAFISGCVLHGHDQHALEL---LLQMKSS 297

Query: 440 D--PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
              P+ +  LS++  + A     +  R++   M        +YI FG
Sbjct: 298 GLVPNVFT-LSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG 343


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/591 (36%), Positives = 331/591 (56%), Gaps = 38/591 (6%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            + LH  ++  GL     + N L+  YGK   +  +  +L +MP+RD V+W +++  Y + 
Sbjct: 472  RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAED 531

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKAC---GSLGATRLGKQVHACFVLSPFCDD 139
              P K ++ F TM  ++ +  ++    S++ AC   G L     GK +HA  V + F  D
Sbjct: 532  EDPDKALAAFQTM-RVEGVSSNYITVVSVLSACLLPGDL--LERGKPLHAYIVSAGFESD 588

Query: 140  DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
            + VK+SL+ MYAKCG  ++++ +F+ +  +N ++W AML+A A  G  ++ +++  +   
Sbjct: 589  EHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSK--- 645

Query: 200  RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                        MR  GV + D    S  + A A  AVLE G+Q
Sbjct: 646  ----------------------------MRSFGVSL-DQFSFSEGLSAAAKLAVLEEGQQ 676

Query: 260  IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
            +HGL + LG+E   FI NA  DMY+KC +I     +      + + SW  +I    +HG 
Sbjct: 677  LHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGY 736

Query: 320  AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
             EE  A + EM+  G+KP  VTFV L+ ACSH GLV KG   +  +  D+G+ P+++H  
Sbjct: 737  FEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCI 796

Query: 380  CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
            C++DLL RSG L EAE  I  MP +P++  W +LL++CK H N + G + A +L  L+PE
Sbjct: 797  CVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPE 856

Query: 440  DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
            D S Y+L SN++A+   W+ V  VRK M    +KK+   S+++       F  G+ +HP 
Sbjct: 857  DDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQ 916

Query: 500  KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
              EI+  L ++   +K  GYV DTS  L D ++++KE  L+ HSERLA+AY L+ +  G+
Sbjct: 917  TMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGS 976

Query: 560  VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             +R+ KNLR+C DCH V K +SR+  R IV+RD  R+HHF+ G CSC D+W
Sbjct: 977  TVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERGLCSCKDYW 1027



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 206/446 (46%), Gaps = 52/446 (11%)

Query: 18  IALTVKTLHAQIIKLGLHQYGPL-PNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASIL 76
           I  T + +HA  +K GL +   L  NTLI+ Y K   V+ A HL + MP R+ VSW +++
Sbjct: 87  IETTGRAVHALCVK-GLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMM 145

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT-RLGKQVHACFVLSP 135
           +   +  L  + +  F  M  L  ++P  FV ASLV ACG  G+  R G QVH     S 
Sbjct: 146 SGIVRVGLYLEGMEFFRKMCDLG-IKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSG 204

Query: 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME--- 192
              D  V ++++ +Y   GL + +R VF+ +  +N VSWT+++  Y+  G  ++ ++   
Sbjct: 205 LLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYK 264

Query: 193 ------------------------------------------IFEQAPVRNLFLWTALVS 210
                                                     IF+Q   R+   W ++ +
Sbjct: 265 DESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAA 324

Query: 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE 270
              Q+ +  ++F  F  MRR   D V+   +S+++    +    + G+ IHGLV+ +G++
Sbjct: 325 AYAQNGHIEESFRIFSLMRRFH-DEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFD 383

Query: 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEM 330
           S + + N ++ MYA     + A  +F +M  KD++SW S++      G++ + L L   M
Sbjct: 384 SVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSM 443

Query: 331 VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH 390
           +S+G   N VTF   + AC       KGR +   ++   G+  +      L+ +  + G 
Sbjct: 444 ISSGKSVNYVTFTSALAACFTPDFFEKGR-ILHGLVVVSGLFYNQIIGNALVSMYGKIGE 502

Query: 391 LDEAENLIKAMPFEPDEPTWAALLSA 416
           + E+  ++  MP   D   W AL+  
Sbjct: 503 MSESRRVLLQMP-RRDVVAWNALIGG 527



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 181/399 (45%), Gaps = 36/399 (9%)

Query: 27  AQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQ 86
            Q++K GL     + N+LI   G    V YA+++ ++M +RD +SW SI  AY Q    +
Sbjct: 274 GQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIE 333

Query: 87  KTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSL 146
           ++  IFS M      + +    ++L+   G +   + G+ +H            VVK   
Sbjct: 334 ESFRIFSLMRRFHD-EVNSTTVSTLLSVLGHVDHQKWGRGIHGL----------VVKMGF 382

Query: 147 VDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWT 206
             +   C                       +L  YA +GR  +A  +F+Q P ++L  W 
Sbjct: 383 DSVVCVC---------------------NTLLRMYAGAGRSVEANLVFKQMPTKDLISWN 421

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
           +L++  V     +DA      M   G   V+ +  +S + AC      E G+ +HGLV+ 
Sbjct: 422 SLMASFVNDGRSLDALGLLCSMISSGKS-VNYVTFTSALAACFTPDFFEKGRILHGLVVV 480

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
            G      I NA+V MY K  ++  ++ +  +M R+DVV+W ++I G A+    ++ LA 
Sbjct: 481 SGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAA 540

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVG-LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385
           +  M   GV  N +T V ++ AC   G L+ +G+ L  + I   G          L+ + 
Sbjct: 541 FQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPL-HAYIVSAGFESDEHVKNSLITMY 599

Query: 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           ++ G L  +++L   +    +  TW A+L+A  HH + E
Sbjct: 600 AKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHHGHGE 637



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 193/401 (48%), Gaps = 40/401 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  ++K+G      + NTL+  Y        A+ + ++MP +D +SW S++ ++   
Sbjct: 371 RGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVND 430

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 + +  +M++  K   ++  F S + AC +      G+ +H   V+S    + ++
Sbjct: 431 GRSLDALGLLCSMISSGK-SVNYVTFTSALAACFTPDFFEKGRILHGLVVVSGLFYNQII 489

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LV MY K G  + +R V   +  ++ V+W A++  YA            ++ P +  
Sbjct: 490 GNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAE-----------DEDPDK-- 536

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC-ANFAVLELGKQIH 261
                             A  +F  MR EGV   + + + S++ AC     +LE GK +H
Sbjct: 537 ------------------ALAAFQTMRVEGVS-SNYITVVSVLSACLLPGDLLERGKPLH 577

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             +++ G+ES   + N+++ MYAKC D+ +++D+F  +  +++++W +++   A HG  E
Sbjct: 578 AYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGE 637

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L L  +M S GV  ++ +F   + A + + ++ +G++L    ++  G       +   
Sbjct: 638 EVLKLVSKMRSFGVSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVK-LGFEHDSFIFNAA 696

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDE--PTWAALLSACKHH 420
            D+ S+ G + E   ++K +P   +   P+W  L+SA   H
Sbjct: 697 ADMYSKCGEIGE---VVKMLPPSVNRSLPSWNILISALGRH 734



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 124/259 (47%), Gaps = 20/259 (7%)

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
             +++ Y + GR K A  +F+  PVRN   W  ++SG+V+    ++    F +M   G+ 
Sbjct: 111 NTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIK 170

Query: 235 IVDPLVLSSIVGACA-NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
                V++S+V AC  + ++   G Q+HG V   G  S +++S AI+ +Y     +  ++
Sbjct: 171 -PSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSR 229

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD----------EMVSAGVKPNEVTFV 343
            +F  M  ++VVSWTS++VG +  G+ EE + +Y           ++V +G++       
Sbjct: 230 KVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESLGRQIIGQVVKSGLESKLAVEN 289

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            LI     +G V     +F  M E   I+     +  +    +++GH++E+  +   M  
Sbjct: 290 SLISMLGSMGNVDYANYIFDQMSERDTIS-----WNSIAAAYAQNGHIEESFRIFSLMRR 344

Query: 404 EPDE---PTWAALLSACKH 419
             DE    T + LLS   H
Sbjct: 345 FHDEVNSTTVSTLLSVLGH 363


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 212/608 (34%), Positives = 350/608 (57%), Gaps = 23/608 (3%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLG-LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L  C+   +  T K +HA  ++   + +   + + L+D Y  C  V+    + + +  R 
Sbjct: 223 LPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRK 282

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
              W +++  Y Q+   +K + +F  M A   L  +    +S+V A          + +H
Sbjct: 283 IGLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIH 342

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              +      +  ++++L+DMY++ G    ++ +FDS++ ++ VSW  ++++Y   GR  
Sbjct: 343 GYVIKRGLETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSS 402

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           DA+ +  +                ++ ++  D  Y+     ++     + + L +++  C
Sbjct: 403 DALLLLHEMQ-------------RIEEKSTYDGDYN---DEKQVPFKPNSITLMTVLPGC 446

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A+ + L  GK+IH   I     S + + +A+VDMYAKC  +  A+ +F +M  ++V++W 
Sbjct: 447 ASLSALAKGKEIHAYAIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWN 506

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAG-----VKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
            II+    HG+ +E+L L+++MV+ G     VKP EVTF+ L  +CSH G+V +G  LF 
Sbjct: 507 VIIMAYGMHGKGKESLELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFH 566

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE-PTWAALLSACKHHRN 422
            M  ++GI P+  HY C++DL+ R+G ++EA  L+  MP   D+   W++LL AC+ + N
Sbjct: 567 KMKNEHGIEPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHN 626

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
            E+G   A +LL L+P+  S Y+LLSN+Y+SA +W     +R+ M  M VKKEPG S+IE
Sbjct: 627 IEIGEIAAENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIE 686

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWH 542
           +G   H F AG+ SHP  +++ + L  L   +K+ GYVPDT+ VLHD++++EKE  L  H
Sbjct: 687 YGDEVHKFLAGDLSHPQSEKLHDFLETLSERLKKEGYVPDTACVLHDIDEEEKETILCGH 746

Query: 543 SERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           SE+LA+A+G+L + PGT +RV KNLRVC DCH   K IS+I  REI++RDA R+HHFKDG
Sbjct: 747 SEKLAIAFGILNTPPGTTIRVAKNLRVCNDCHTASKFISKIEDREIILRDARRFHHFKDG 806

Query: 603 KCSCNDFW 610
            CSC D+W
Sbjct: 807 TCSCGDYW 814



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 180/396 (45%), Gaps = 51/396 (12%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+  Y K   +  A  LL     RD V+W S++++++Q     + + +F  ++ L+ +
Sbjct: 154 NALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEAL-MFLRLMVLEGV 212

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHA-CFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           +PD   FAS++ AC  L   R GK++HA         ++  V S+LVDMY  CG   + R
Sbjct: 213 KPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGR 272

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            VFDS+  +    W AM++ YA                               QS ++  
Sbjct: 273 LVFDSVLDRKIGLWNAMIAGYA-------------------------------QSEHDEK 301

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
           A   FIEM        +   +SSIV A      +   + IHG VI  G E+  ++ NA++
Sbjct: 302 ALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHGYVIKRGLETNRYLQNALI 361

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL-------------- 326
           DMY++  DI  +K IF  M  +D+VSW +II      G++ + L L              
Sbjct: 362 DMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQRIEEKSTYD 421

Query: 327 --YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
             Y++      KPN +T + ++  C+ +  + KG+++    I +  +   +   + L+D+
Sbjct: 422 GDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNL-LASQVTVGSALVDM 480

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            ++ G L+ A  +   MP   +  TW  ++ A   H
Sbjct: 481 YAKCGCLNLARRVFDQMPIR-NVITWNVIIMAYGMH 515



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 193/407 (47%), Gaps = 55/407 (13%)

Query: 23  KTLHAQIIKLGLHQYGP--LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           K +HA + K G   +    + NTL++ YGKC  +  A+ + + + +RD VSW SI++A  
Sbjct: 30  KQIHAHVFKFGYGSFSSVTIDNTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALC 89

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSL---GATRLGKQVHACFVLSPFC 137
           +    +  I  F  ML ++  +P  F   S+  AC +L       LGKQ+H C       
Sbjct: 90  RFEEWEVAIKAFRLML-MEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHW 148

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
                 ++L+ MYAK G  ++A+++    + ++ V+W +M+S+++++ R  +A+      
Sbjct: 149 -RTFSNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEAL------ 201

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
               +FL   ++ G+                        D +  +S++ AC++  +L  G
Sbjct: 202 ----MFLRLMVLEGVKP----------------------DGVTFASVLPACSHLDLLRTG 235

Query: 258 KQIHGLVIALGYESCL---FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
           K+IH    AL  +  +   F+ +A+VDMY  C  + + + +F  +  + +  W ++I G 
Sbjct: 236 KEIHAY--ALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGY 293

Query: 315 AQHGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
           AQ    E+ L L+ EM  +AG+  N  T   ++ A  +V   G  R   K  I  Y I  
Sbjct: 294 AQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPA--YVRCEGISR---KEGIHGYVIKR 348

Query: 374 SLQH----YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            L+        L+D+ SR G +  ++ +  +M  + D  +W  ++++
Sbjct: 349 GLETNRYLQNALIDMYSRMGDIKTSKRIFDSME-DRDIVSWNTIITS 394



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 145/330 (43%), Gaps = 41/330 (12%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHA---CFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
             PD+F F +++KA   +    LGKQ+HA    F    F     + ++LV+MY KCG   
Sbjct: 6   FSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSF-SSVTIDNTLVNMYGKCG--- 61

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
                                          DA ++F++   R+   W +++S L +   
Sbjct: 62  ----------------------------GLGDAYKVFDRITERDQVSWNSIISALCRFEE 93

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV---LELGKQIHGLVIALGYESCLF 274
              A  +F  M  EG +      L S+  AC+N      L LGKQIHG     G+    F
Sbjct: 94  WEVAIKAFRLMLMEGFE-PSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRT-F 151

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
            +NA++ MYAK   +  AK +      +D+V+W S+I   +Q+ +  E L     MV  G
Sbjct: 152 SNNALMAMYAKLGRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEG 211

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
           VKP+ VTF  ++ ACSH+ L+  G+++    +    +  +    + L+D+    G + E+
Sbjct: 212 VKPDGVTFASVLPACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQV-ES 270

Query: 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
             L+     +     W A+++      + E
Sbjct: 271 GRLVFDSVLDRKIGLWNAMIAGYAQSEHDE 300


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/604 (35%), Positives = 347/604 (57%), Gaps = 37/604 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C   +     + +H  +IK        L   LI  Y KCD +  A  + +EMPQR+ 
Sbjct: 69  LNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFDEMPQRNV 128

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC-GSLGATRLGKQVH 128
           VSW ++++AY+Q     + +++F  ML  D  +P+HF FA+++ +C GSLG    G+Q+H
Sbjct: 129 VSWTAMISAYSQRGFAFEALNLFVEMLRSDT-EPNHFTFATILTSCYGSLG-FETGRQIH 186

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           +  +   +     V SSL+DMYAK                               SGR  
Sbjct: 187 SIAIKRNYESHMFVGSSLLDMYAK-------------------------------SGRIC 215

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           DA  +F   P R++   TA++SG  Q   + +A   F +++ EG++  + +  +S++ A 
Sbjct: 216 DAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMN-SNSVTYASVLTAL 274

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           +  A L  GKQ+H  V+  G  S + + N+++DMY+KC ++  A+ IF  M  +  +SW 
Sbjct: 275 SGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWN 334

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           +++VG ++HG A E L L+  M     VKP+ +T++ ++  CSH  L   G ++F +M+ 
Sbjct: 335 AMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVN 394

Query: 368 DY-GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
              GI P + HY C++DLL R+G ++EA + IK MPF P    W +LL +C+ H + E+G
Sbjct: 395 GKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIG 454

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
             V   LL L+PE+  +Y++LSN+YASA  W+ +  +R LM    V KEPG S++E  + 
Sbjct: 455 IIVGQKLLELEPENAGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWVELDQI 514

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            H F+A + +HP ++E+   + EL  + K  GYVPD S VL+D+++++KE+ L  HSE+L
Sbjct: 515 VHTFHASDHTHPRREEVANKVKELSIKFKEDGYVPDLSCVLYDVDEEQKEKVLLGHSEKL 574

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+A+GL+ +  GT +RV+KNLR+C DCH   K +SR+  R +++RD  R+H+   G CSC
Sbjct: 575 ALAFGLIATPEGTTIRVIKNLRICVDCHSFAKFVSRLYARTVILRDKNRFHNIVGGVCSC 634

Query: 607 NDFW 610
            D+W
Sbjct: 635 GDYW 638



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/364 (26%), Positives = 162/364 (44%), Gaps = 66/364 (18%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           + S++  C S  A R G++VH   + + +     +++ L+ +Y KC    +AR +FD   
Sbjct: 65  YDSILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDARGMFD--- 121

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
                                       + P RN+  WTA++S   Q     +A   F+E
Sbjct: 122 ----------------------------EMPQRNVVSWTAMISAYSQRGFAFEALNLFVE 153

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M R   +  +    ++I+ +C      E G+QIH + I   YES +F+ ++++DMYAK  
Sbjct: 154 MLRSDTE-PNHFTFATILTSCYGSLGFETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSG 212

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            I  A  +F  +  +DVV+ T+II G AQ G  EE L L+ ++   G+  N VT+  ++ 
Sbjct: 213 RICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLT 272

Query: 348 ACSHVGLVGKGRK---------------LFKSMIEDYG----------ITPSLQHYTC-- 380
           A S +  +  G++               L  S+I+ Y           I  S+   TC  
Sbjct: 273 ALSGLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCIS 332

Query: 381 ---LLDLLSRSGHLDEAENLIKAMPFE----PDEPTWAALLSACKHHRNTEMGTRVANHL 433
              +L   S+ G   E   L K M  E    PD  T+ A+LS C H +  +MG  +  ++
Sbjct: 333 WNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNM 392

Query: 434 LSLK 437
           ++ K
Sbjct: 393 VNGK 396


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/551 (37%), Positives = 311/551 (56%), Gaps = 33/551 (5%)

Query: 60  LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
           + +EM +RD VSW +++    +    Q+ +S+   M   D   PD F  ++++       
Sbjct: 126 VFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWR-DGFMPDTFTLSTVLPIFAECA 184

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
             + G  VH   + + F +D  V SSL+DMYA C   + +  VFDS    ++V       
Sbjct: 185 DIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAV------- 237

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
                                   LW ++++G  Q+ +  +A   F  M + GV  V P+
Sbjct: 238 ------------------------LWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPV-PV 272

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
             SS++ A  N ++L LGKQ+H  +I   +   +FIS++++DMY KC ++  A+ +F  +
Sbjct: 273 TFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGI 332

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
           +  D+VSWT++I+G A HG   E   L++ M    VKPN +TF+ ++ ACSH GLV  G 
Sbjct: 333 QSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGW 392

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           K F SM   YG  PSL+H   L D L R+G LDEA N I  M  +P    W+ LL AC+ 
Sbjct: 393 KYFNSMSNQYGFVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRV 452

Query: 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
           H+NT +   VA  +  L+P+   S+++LSN+Y+++  W   +++RK M +  +KKEP  S
Sbjct: 453 HKNTVLAEEVAKKIFELEPKSMGSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACS 512

Query: 480 YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL 539
           +IE     H+F A + SHP  D I + L     +M R+GYVP+   VL D+E+++K   L
Sbjct: 513 WIEVKNKLHVFIAHDKSHPWYDRIIDALNVYSEQMIRQGYVPNMEDVLQDIEEEQKREVL 572

Query: 540 FWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
             HSE+LA+ +G++ + PGT +RV+KNLRVC DCHI  K IS+I  REIVVRD  R+H F
Sbjct: 573 CGHSEKLAIVFGIISTPPGTTIRVMKNLRVCVDCHIATKFISKIVAREIVVRDVNRFHRF 632

Query: 600 KDGKCSCNDFW 610
           KDG CSC DFW
Sbjct: 633 KDGNCSCGDFW 643



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 175/400 (43%), Gaps = 71/400 (17%)

Query: 71  SWA-SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL---VKACGSLGATRLGKQ 126
           SWA  I  A +Q       IS+F  M A   + P   V ASL   +K+C  LG   L   
Sbjct: 14  SWAYQIRMAASQGQFLH-AISLFLQMRA--SVAPRSSVPASLPAALKSCAGLGLCTLAAS 70

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKC----------------GLPNNA----RAVFDSI 166
           +HA  + S    D    ++L+++  K                 GL + A    R VFD +
Sbjct: 71  LHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGPSGEGGLESAAYESMRKVFDEM 130

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
             +++VSW  ++   A   R ++A+ +                                 
Sbjct: 131 LERDAVSWNTLILGCAEHKRHQEALSMVR------------------------------- 159

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           EM R+G  + D   LS+++   A  A ++ G  +HG  I  G+++ +F+ ++++DMYA C
Sbjct: 160 EMWRDGF-MPDTFTLSTVLPIFAECADIKRGMVVHGYAIKNGFDNDVFVGSSLIDMYANC 218

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
           + +  +  +F      D V W S++ G AQ+G  EE L ++  M+ AGV+P  VTF  LI
Sbjct: 219 TQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLI 278

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            A  ++ L+  G++L   +I       ++   + L+D+  + G++D A  +   +   PD
Sbjct: 279 PAFGNLSLLRLGKQLHAYLIRAR-FNDNIFISSSLIDMYCKCGNVDIARRVFNGIQ-SPD 336

Query: 407 EPTWAALLSACKHHRNT----------EMGTRVANHLLSL 436
             +W A++     H  T          E+G    NH+  L
Sbjct: 337 IVSWTAMIMGYALHGPTTEAFVLFERMELGNVKPNHITFL 376



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/178 (35%), Positives = 97/178 (54%), Gaps = 1/178 (0%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H   IK G      + ++LID Y  C  + Y+  + +     D V W S+L  Y Q   
Sbjct: 192 VHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYSMKVFDSFSDCDAVLWNSMLAGYAQNGS 251

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            ++ + IF  ML    ++P    F+SL+ A G+L   RLGKQ+HA  + + F D+  + S
Sbjct: 252 VEEALGIFRRMLQAG-VRPVPVTFSSLIPAFGNLSLLRLGKQLHAYLIRARFNDNIFISS 310

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           SL+DMY KCG  + AR VF+ I+  + VSWTAM+  YA  G   +A  +FE+  + N+
Sbjct: 311 SLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALHGPTTEAFVLFERMELGNV 368



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 3/160 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LHA +I+   +    + ++LID Y KC  V  A  +   +   D VSW +++  Y   
Sbjct: 291 KQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMGYALH 350

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG-KQVHACFVLSPFCDDDV 141
               +   +F  M  L  ++P+H  F +++ AC   G    G K  ++      F     
Sbjct: 351 GPTTEAFVLFERM-ELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYGFVPSLE 409

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSA 180
             ++L D   + G  + A      +K+K + S W+ +L A
Sbjct: 410 HCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRA 449


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 220/588 (37%), Positives = 328/588 (55%), Gaps = 33/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  +IK        +   L+D Y K   +  A  + + M  RD +   ++++  +  
Sbjct: 323 RQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHG 382

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + +S+F   L  + L  +    A+++K+  SL A    +QVHA  V   F  D  V
Sbjct: 383 GRHDEALSLFYE-LRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHV 441

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            + L+D Y KC                      + LS         DA  +FE+    ++
Sbjct: 442 VNGLIDSYWKC----------------------SCLS---------DANRVFEECSSGDI 470

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
              T++++ L Q  +   A   F+EM R+G++  DP VLSS++ ACA+ +  E GKQ+H 
Sbjct: 471 IACTSMITALSQCDHGEGAIKLFMEMLRKGLE-PDPFVLSSLLNACASLSAYEQGKQVHA 529

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +I   + S  F  NA+V  YAKC  I  A+  F  +  + VVSW+++I G AQHG  + 
Sbjct: 530 HLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKR 589

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L+  MV  G+ PN +T   ++ AC+H GLV + ++ F SM E +GI  + +HY+C++
Sbjct: 590 ALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMI 649

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G LD+A  L+ +MPF+ +   W ALL A + H++ E+G   A  L  L+PE   
Sbjct: 650 DLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSG 709

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +++LL+N YASA MW  V+KVRKLM    +KKEP  S+IE     H F  G+ SHP+  E
Sbjct: 710 THVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHTFIVGDKSHPMTKE 769

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L EL   M + G+VP+    LHD+++ EKE  L  HSERLAVA+ LL + PG  +R
Sbjct: 770 IYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVAFALLSTPPGAPIR 829

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V KNLR+C DCH+  K IS+I  REI++RD  R+HHF+DG CSC D+W
Sbjct: 830 VKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDYW 877



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/424 (30%), Positives = 192/424 (45%), Gaps = 56/424 (13%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
           IS  L R    A  Q  L    LHA ++K G        N LI  Y KC     A  + +
Sbjct: 7   ISQQLTRY---AAAQALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRVFD 61

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
           E+P   HVSW+S++TAY+   LP+  I  F  M A + +  + F    ++K    +   R
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRA-EGVCCNEFALPVVLKC---VPDAR 117

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           LG QVHA  + + F  D  V ++LV MY   G  ++AR VF+                  
Sbjct: 118 LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN------------------ 159

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
                       E    RN   W  L+S  V++    DA   F EM   G+   +    S
Sbjct: 160 ------------EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTE-FGFS 206

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            +V AC     +E G+Q+H +V+ +GY+  +F +NA+VDMY K   +  A  IF +M   
Sbjct: 207 CVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDS 266

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           DVVSW ++I G   +G     + L  +M  +G+ PN  T   ++ ACS  G    GR++ 
Sbjct: 267 DVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIH 326

Query: 363 KSMI------EDY-GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
             MI      +DY G+         L+D+ +++  LD+A  +   M F  D     AL+S
Sbjct: 327 GFMIKANADSDDYIGVG--------LVDMYAKNHFLDDARKVFDWM-FHRDLILCNALIS 377

Query: 416 ACKH 419
            C H
Sbjct: 378 GCSH 381



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 188/398 (47%), Gaps = 35/398 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA ++++G  +     N L+D Y K   V  A  + E+MP  D VSW ++++     
Sbjct: 222 RQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLN 281

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + I +   M     L P+ F  +S++KAC   GA  LG+Q+H   + +    DD +
Sbjct: 282 GHDHRAIELLLQM-KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYI 340

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
              LVDMYAK    ++AR VFD +  ++ +   A++S  +  GR  +A+ +         
Sbjct: 341 GVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSL--------- 391

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                 F E+R+EG+  V+   L++++ + A+       +Q+H 
Sbjct: 392 ----------------------FYELRKEGLG-VNRTTLAAVLKSTASLEAASTTRQVHA 428

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L + +G+     + N ++D Y KCS +  A  +F      D+++ TS+I   +Q    E 
Sbjct: 429 LAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEG 488

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L+ EM+  G++P+      L+ AC+ +    +G+++   +I+   ++ +      L+
Sbjct: 489 AIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALV 547

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
              ++ G +++AE    ++P E    +W+A++     H
Sbjct: 548 YTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQH 584



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/185 (36%), Positives = 101/185 (54%), Gaps = 1/185 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+  A  + A T + +HA  +K+G      + N LID+Y KC  +  A+ + EE    D 
Sbjct: 411 LKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDI 470

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           ++  S++TA +Q +  +  I +F  ML    L+PD FV +SL+ AC SL A   GKQVHA
Sbjct: 471 IACTSMITALSQCDHGEGAIKLFMEMLR-KGLEPDPFVLSSLLNACASLSAYEQGKQVHA 529

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +   F  D    ++LV  YAKCG   +A   F S+  +  VSW+AM+   A+ G  K 
Sbjct: 530 HLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKR 589

Query: 190 AMEIF 194
           A+E+F
Sbjct: 590 ALELF 594


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/590 (36%), Positives = 339/590 (57%), Gaps = 35/590 (5%)

Query: 25  LHAQIIKLGLHQYGPL-PNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           LH   ++ GL    P   + L+  Y  C     A    +E+P  + V   ++ + Y + N
Sbjct: 115 LHLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRNN 174

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
           L   ++ +F  M+A D         AS+V    +L A          F  S    D  V 
Sbjct: 175 LVYHSLELFRAMIASDS--------ASVVDEAAALVA----------FSASARVPDRGVT 216

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK--KDAMEIFEQAPVRN 201
           +SL  + AK G   NA  V              ML +YA+ G +  + A ++F+    R+
Sbjct: 217 ASLHALIAKIGFERNAGVV------------NTMLDSYAKGGSRDLEVARKVFDTME-RD 263

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLSSIVGACANFAVLELGKQI 260
           +  W ++++   Q+    +A   + +M   G  I  + + LS+++ ACA+   ++ GK+I
Sbjct: 264 VVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRI 323

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H  V+ +G E  +++  +IVDMY+KC  +  A   F +++ K+++SW+++I G   HG+ 
Sbjct: 324 HNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRG 383

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           +E L ++ EM  +G++PN +TF+ ++ ACSH GL+ +GR  + +M +++GI   ++HY C
Sbjct: 384 QEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGC 443

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DLL R+G LDEA +LIK M  +PD   W ALLSAC+ H+N E+       L  L   +
Sbjct: 444 MVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASN 503

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
              Y+LLSN+YA A MW+ V ++R L+    ++K PGYS  E     ++FY G+ SHP  
Sbjct: 504 SGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGDKSHPQH 563

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
            EI+  L +L   M+  GYVP+T SVLHD++++EKE  L  HSE+LAVA+ L+ SVP +V
Sbjct: 564 IEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMNSVPRSV 623

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + ++KNLRVC DCH  MK I++IT+REI++RD  R+HHFKDG CSC D+W
Sbjct: 624 IHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 673


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/601 (36%), Positives = 332/601 (55%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+        + +H  +IK        +   L+D Y K   +  A  + + M  RD 
Sbjct: 310 LKACSGAGAFDLGRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDL 369

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +   ++++  +      + +S+F   L  + L  +    A+++K+  SL A    +QVHA
Sbjct: 370 ILCNALISGCSHGGRHDEALSLFYE-LRKEGLGVNRTTLAAVLKSTASLEAASTTRQVHA 428

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V   F  D  V + L+D Y KC                      + LS         D
Sbjct: 429 LAVKIGFIFDAHVVNGLIDSYWKC----------------------SCLS---------D 457

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +FE+    ++   T++++ L Q  +   A   F+EM R+G++  DP VLSS++ ACA
Sbjct: 458 ANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLE-PDPFVLSSLLNACA 516

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           + +  E GKQ+H  +I   + S  F  NA+V  YAKC  I  A+  F  +  + VVSW++
Sbjct: 517 SLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSA 576

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G AQHG  +  L L+  MV  G+ PN +T   ++ AC+H GLV + ++ F SM E +
Sbjct: 577 MIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMF 636

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI  + +HY+C++DLL R+G LD+A  L+ +MPF+ +   W ALL A + H++ E+G   
Sbjct: 637 GIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDPELGKLA 696

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  L  L+PE   +++LL+N YASA MW  V+KVRKLM    +KKEP  S+IE     H 
Sbjct: 697 AEKLFILEPEKSGTHVLLANTYASAGMWNEVAKVRKLMKDSNIKKEPAMSWIEVKDKVHT 756

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F  G+ SHP+  EI+  L EL   M + G+VP+    LHD+++ EKE  L  HSERLAVA
Sbjct: 757 FIVGDKSHPMTKEIYAKLVELGDLMSKAGFVPNVDVDLHDLDRSEKELLLSHHSERLAVA 816

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + LL + PG  +RV KNLR+C DCH+  K IS+I  REI++RD  R+HHF+DG CSC D+
Sbjct: 817 FALLSTPPGAPIRVKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFRDGTCSCGDY 876

Query: 610 W 610
           W
Sbjct: 877 W 877



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 130/424 (30%), Positives = 191/424 (45%), Gaps = 56/424 (13%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
           IS  L R    A  Q  L    LHA ++K G        N LI  Y KC     A    +
Sbjct: 7   ISQQLTRY---AAAQALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRFFD 61

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
           E+P   HVSW+S++TAY+   LP+  I  F  M A + +  + F    ++K    +   R
Sbjct: 62  EIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRA-EGVCCNEFALPVVLKC---VPDAR 117

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           LG QVHA  + + F  D  V ++LV MY   G  ++AR VF+                  
Sbjct: 118 LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFN------------------ 159

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
                       E    RN   W  L+S  V++    DA   F EM   G+   +    S
Sbjct: 160 ------------EADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQPTE-FGFS 206

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            +V AC     +E G+Q+H +V+ +GY+  +F +NA+VDMY K   +  A  IF +M   
Sbjct: 207 CVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDS 266

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           DVVSW ++I G   +G     + L  +M  +G+ PN  T   ++ ACS  G    GR++ 
Sbjct: 267 DVVSWNALISGCVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIH 326

Query: 363 KSMI------EDY-GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
             MI      +DY G+         L+D+ +++  LD+A  +   M F  D     AL+S
Sbjct: 327 GFMIKANADSDDYIGVG--------LVDMYAKNHFLDDARKVFDWM-FHRDLILCNALIS 377

Query: 416 ACKH 419
            C H
Sbjct: 378 GCSH 381



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 188/398 (47%), Gaps = 35/398 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA ++++G  +     N L+D Y K   V  A  + E+MP  D VSW ++++     
Sbjct: 222 RQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLN 281

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + I +   M     L P+ F  +S++KAC   GA  LG+Q+H   + +    DD +
Sbjct: 282 GHDHRAIELLLQM-KYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDDYI 340

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
              LVDMYAK    ++AR VFD +  ++ +   A++S  +  GR  +A+ +         
Sbjct: 341 GVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSL--------- 391

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                 F E+R+EG+  V+   L++++ + A+       +Q+H 
Sbjct: 392 ----------------------FYELRKEGLG-VNRTTLAAVLKSTASLEAASTTRQVHA 428

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L + +G+     + N ++D Y KCS +  A  +F      D+++ TS+I   +Q    E 
Sbjct: 429 LAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEG 488

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L+ EM+  G++P+      L+ AC+ +    +G+++   +I+   ++ +      L+
Sbjct: 489 AIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQVHAHLIKRQFMSDAFAG-NALV 547

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
              ++ G +++AE    ++P E    +W+A++     H
Sbjct: 548 YTYAKCGSIEDAELAFSSLP-ERGVVSWSAMIGGLAQH 584


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1134

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/594 (36%), Positives = 339/594 (57%), Gaps = 43/594 (7%)

Query: 25   LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
            +H   +K+G      + N+L+D Y KC  +  A  +   M  R  +SW +++  Y  A  
Sbjct: 492  IHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGY 551

Query: 85   PQKTISIFSTML-ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF-CDDD-V 141
              + ++ F  M  A  K +PD F   SL+KAC S G    GKQ+H   V S F C     
Sbjct: 552  GSRALATFGMMQEAKIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSAT 611

Query: 142  VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
            +  SLVD+Y KCG   +AR  FD IK K  +SW++++  YA+ G   +AM +F++     
Sbjct: 612  ITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKR----- 666

Query: 202  LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                      L +  ++ID+F                 VLSSI+G  A+FA+L+ GKQ+ 
Sbjct: 667  ----------LQELSSQIDSF-----------------VLSSIIGVFADFALLQQGKQMQ 699

Query: 262  GLVIAL--GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
             LV+ L  G E+   +SN++VDMY KC  +  A+  F  M+ KDV+SWT +I G  +HG 
Sbjct: 700  ALVVKLPSGLETS--VSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGL 757

Query: 320  AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
             ++ ++++++M+   ++P+EV ++ ++ ACSH G++ +G +LF  ++E  GI P ++HY 
Sbjct: 758  GKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYA 817

Query: 380  CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
            C++DLL R+G L EA++L+  MP +P+   W  LLS C+ H + E+G  V   LL +  +
Sbjct: 818  CVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDGK 877

Query: 440  DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
            +P++Y+++SN+Y  A  W      R+L S+  ++KE G S++E  +  H F +GE SHPL
Sbjct: 878  NPANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIEREVHFFRSGEDSHPL 937

Query: 500  KDEIFELLTELDAEMKRR-GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLK---S 555
               I E L E++  ++   GYV      LHD++ + KE  L  HSE+LA+   L     +
Sbjct: 938  TLVIQETLKEVERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLN 997

Query: 556  VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
              G  +RV KNLRVC DCH  +K +S+ITK   VVRDA R+H F+DG CSC D+
Sbjct: 998  QKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDY 1051



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 147/303 (48%), Gaps = 8/303 (2%)

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
           N ++   ++  Y +   +  A ++F+  P RN+  WTAL+SG V + +   +   F EM 
Sbjct: 403 NLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEMG 462

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289
           R+G+   +    S+ + AC     LE G QIHG  + +G+E  + + N++VDMY+KC  I
Sbjct: 463 RQGI-YPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRI 521

Query: 290 IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK--PNEVTFVGLIY 347
             A+ +F  M  + ++SW ++I G    G     LA +  M  A +K  P+E T   L+ 
Sbjct: 522 NEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLK 581

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT-CLLDLLSRSGHLDEAENLIKAMPFEPD 406
           ACS  G++  G+++   ++      PS    T  L+DL  + G+L  A      +  E  
Sbjct: 582 ACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIK-EKT 640

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS--NVYASAAMWQHVSKVR 464
             +W++L+       +      +   L  L  +   S++L S   V+A  A+ Q   +++
Sbjct: 641 MISWSSLILGYAQEGDFVEAMGLFKRLQELSSQ-IDSFVLSSIIGVFADFALLQQGKQMQ 699

Query: 465 KLM 467
            L+
Sbjct: 700 ALV 702



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 98/195 (50%), Gaps = 3/195 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLH--QYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR 67
           L+ C+   +    K +H  +++ G H      +  +L+D Y KC  +  A    +++ ++
Sbjct: 580 LKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEK 639

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
             +SW+S++  Y Q     + + +F  +  L   Q D FV +S++         + GKQ+
Sbjct: 640 TMISWSSLILGYAQEGDFVEAMGLFKRLQELSS-QIDSFVLSSIIGVFADFALLQQGKQM 698

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
            A  V  P   +  V +SLVDMY KCGL + A   F  ++LK+ +SWT M++ Y + G  
Sbjct: 699 QALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLG 758

Query: 188 KDAMEIFEQAPVRNL 202
           K A+ IF +    N+
Sbjct: 759 KKAVSIFNKMLRHNI 773


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/605 (36%), Positives = 336/605 (55%), Gaps = 38/605 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA     L  +  H + IKLGL     + NTL+  Y +   +     +   M +RD 
Sbjct: 211 LSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQ 270

Query: 70  VSWASILTAYNQANLP-QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
           VSW +++ A   +     + I +F  M+      P+   F +L+    SL  ++L  Q+H
Sbjct: 271 VSWNTVIGALADSGASVSEAIEVFLEMMRAG-WSPNRVTFINLLATVSSLSTSKLSHQIH 329

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI-KLKNSVSWTAMLSAYARSGRK 187
           A  +     DD+ ++++L+  Y K G   N   +F  + + ++ VSW +M+S Y  +   
Sbjct: 330 ALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELL 389

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
             AM++          +W      ++Q    +D F                   ++++ A
Sbjct: 390 CKAMDL----------VWL-----MMQRGQRLDCF-----------------TFATVLSA 417

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
           CA  A LE G ++H   I    ES + I +A+VDMY+KC  I  A   F  M  +++ SW
Sbjct: 418 CATVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLYSW 477

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            S+I G A+HG  +  L L+  M  +G  P+ +TFVG++ ACSH+GLV +G + FKSM E
Sbjct: 478 NSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTE 537

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC--KHHRNTEM 425
            YG+ P ++HY+C++DLL R+G LD+ EN I  MP +P+   W  +L AC   + R TE+
Sbjct: 538 VYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRTVLGACCRGNGRKTEL 597

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G R A  L ++ P++  +Y+LLSN+YAS   W+ +++ R+ M    VKKE G S++    
Sbjct: 598 GRRAAEMLFNMDPQNAVNYVLLSNMYASGGKWEDMARTRRAMREAAVKKEAGCSWVTMKD 657

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
           G H+F AG+ SHP K  I+  L ELD +++  GYVP     L+D+E + KE  L +HSE+
Sbjct: 658 GVHVFVAGDNSHPEKGLIYAKLKELDKKIRDAGYVPQIKFALYDLEPENKEELLSYHSEK 717

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LAVA+ L ++  G  +R++KNLRVCGDCH   K IS++  R IV+RD+ R+HHF+DGKCS
Sbjct: 718 LAVAFVLTRN-SGLPIRIMKNLRVCGDCHSAFKYISKVVDRSIVLRDSNRFHHFEDGKCS 776

Query: 606 CNDFW 610
           C D+W
Sbjct: 777 CRDYW 781



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 192/399 (48%), Gaps = 37/399 (9%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
            H  ++K G      L NTLI+ Y +      A  L +EMP R+ V+WA +++ Y Q  +
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGM 81

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACG-SLGATRLGKQVHACFVLSPFCDDDV-V 142
           P+    +   M+  +   P+ F F S ++AC  S+   R G+QVH   + +   D  V V
Sbjct: 82  PEDACGVLKEMI-FEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAV 140

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            + L++MYAKCG  ++AR+VF  +  K+SVSW +M                         
Sbjct: 141 GNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSM------------------------- 175

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                 ++GL Q++   DA  S+  MR+ G+ +     L S + +CA+   + LG+Q HG
Sbjct: 176 ------ITGLDQNKCFEDAVKSYNSMRKTGL-MPSNFALISALSSCASLGCILLGQQTHG 228

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA-E 321
             I LG +  + +SN ++ +YA+ S +   + +F  M  +D VSW ++I   A  G +  
Sbjct: 229 EGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVS 288

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E + ++ EM+ AG  PN VTF+ L+   S +    K      ++I  Y +         L
Sbjct: 289 EAIEVFLEMMRAGWSPNRVTFINLLATVSSLS-TSKLSHQIHALILKYNVKDDNAIENAL 347

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           L    +SG ++  E +   M    DE +W +++S   H+
Sbjct: 348 LACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHN 386



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/203 (24%), Positives = 97/203 (47%), Gaps = 13/203 (6%)

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
            H  V+  G++S LF+ N ++++Y +  D ++A+ +F  M  ++ V+W  +I G  Q+G 
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGM 81

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL-VGKGRKLFKSMIEDYGITPSLQHY 378
            E+   +  EM+  G  PN   F   I AC    L   KGR+     +  Y I   L   
Sbjct: 82  PEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQ-----VHGYAIRTGLNDA 136

Query: 379 TC-----LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
                  L+++ ++ G +D A ++   M  + D  +W ++++    ++  E   +  N +
Sbjct: 137 KVAVGNGLINMYAKCGDIDHARSVFGLM-VDKDSVSWNSMITGLDQNKCFEDAVKSYNSM 195

Query: 434 LSLKPEDPSSYILLSNVYASAAM 456
                  PS++ L+S + + A++
Sbjct: 196 RKTGLM-PSNFALISALSSCASL 217


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  412 bits (1060), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/588 (36%), Positives = 328/588 (55%), Gaps = 37/588 (6%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  I + GL     + N L++ YG+C+    A  + +++   + +SW S++  Y Q   
Sbjct: 384 IHLLITEHGLDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCER 443

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKAC--GSLGATRLGKQVHACFVLSPFCDDDVV 142
               + +F TM     +QPD   F +++ AC  GS G TR  K VH C   S      +V
Sbjct: 444 HDDALQLFRTMQQ-QGIQPDRVNFMTILGACTIGSHGRTR--KLVHQCVEESGLGGSPLV 500

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           ++SLV+MYAK G  + A  +   +  +   +W  +++ YA  GR ++A+E +++      
Sbjct: 501 QTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALEAYQK------ 554

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                    ++ E +  VD +   S++ AC +   L  GK IH 
Sbjct: 555 -------------------------LQLEAIP-VDKVTFISVLNACTSSTSLAEGKMIHS 588

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             +  G +S + + NA+ +MY+KC  +  A+ IF  M  +  VSW  ++   AQHG++EE
Sbjct: 589 NAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEE 648

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L  +M   GVK N +TFV ++ +CSH GL+ +G + F S+  D GI    +HY CL+
Sbjct: 649 VLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLV 708

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G L EAE  I  MP EP   TWA+LL AC+  ++ + G   A  LL L P + S
Sbjct: 709 DLLGRAGKLQEAEKYISKMPLEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSS 768

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           + ++LSN+Y+    W++ +K+R+ M+   VKK PG S I+     H F   +TSHP   E
Sbjct: 769 ASVVLSNIYSERGDWKNAAKLRRAMASRRVKKVPGISSIQVKNKVHEFRVRDTSHPRAAE 828

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I++ + EL   M+  GYVPDT  VLHD+++++KE  L +HSE+LA+A+GL+ +   + L 
Sbjct: 829 IYDKVEELCFAMREAGYVPDTKMVLHDVDEEQKESLLAYHSEKLAIAFGLISTPETSSLH 888

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + KNLRVC DCH   K IS+IT REIVVRD  R+HHF+DG CSC D+W
Sbjct: 889 IFKNLRVCEDCHTATKFISKITGREIVVRDNHRFHHFRDGSCSCKDYW 936



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 195/401 (48%), Gaps = 41/401 (10%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN-QAN 83
           +HA  ++ G  Q   +   L++ YGKC  +  A  + EEM +++ V+W ++L  Y+ Q  
Sbjct: 80  VHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGC 139

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
             +  + +F+ ML L+ ++ +   F +++ +     A R GK +H+C   S    D  V 
Sbjct: 140 CWKLAVELFTRML-LEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVN 198

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           ++LV+ Y KCG   +AR VFD +  ++  +W +M+SAY+ S R                 
Sbjct: 199 TALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISER----------------- 241

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
                 SG        +AF+ F  M++EG +  D +   SI+ AC N   L+ GK +   
Sbjct: 242 ------SG--------EAFFIFQRMQQEG-ERCDRVTFLSILDACVNPETLQHGKHVRES 286

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           +    +E  LF+  A++ MYA+C     A  +FGRM++ ++++W++II   A HG   E 
Sbjct: 287 ISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEA 346

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYA-CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
           L  +  M   G+ PN VTF+ L+    +  GL    R     +I ++G+  +      L+
Sbjct: 347 LRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSR--IHLLITEHGLDDTTTMRNALV 404

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS---ACKHH 420
           ++  R    D+A  +   +   P+  +W +++     C+ H
Sbjct: 405 NVYGRCESPDDARTVFDQLEL-PNLISWNSMIGIYVQCERH 444



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 106/422 (25%), Positives = 197/422 (46%), Gaps = 37/422 (8%)

Query: 35  HQYGPLPNT-LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFS 93
           H      NT L++ Y KC  +  A  + + MP R   +W S+++AY+ +    +   IF 
Sbjct: 191 HSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQ 250

Query: 94  TMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC 153
            M   +  + D   F S++ AC +    + GK V      + F  D  V ++L+ MYA+C
Sbjct: 251 RMQQ-EGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARC 309

Query: 154 GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLV 213
             P +A  VF  +K  N ++W+A+++A+A  G   +A+  F                   
Sbjct: 310 RSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRM----------------- 352

Query: 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
                         M++EG+ + + +   S++      + LE   +IH L+   G +   
Sbjct: 353 --------------MQQEGI-LPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTT 397

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
            + NA+V++Y +C     A+ +F ++   +++SW S+I    Q  + ++ L L+  M   
Sbjct: 398 TMRNALVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQ 457

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
           G++P+ V F+ ++ AC+ +G  G+ RKL    +E+ G+  S    T L+++ +++G LD 
Sbjct: 458 GIQPDRVNFMTILGACT-IGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDV 516

Query: 394 AENLIKAMPFEPDEPTWAALLSA-CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           AE +++ M  E     W  L++    H R+ E         L   P D  ++I + N   
Sbjct: 517 AEVILQEMD-EQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACT 575

Query: 453 SA 454
           S+
Sbjct: 576 SS 577



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 139/309 (44%), Gaps = 35/309 (11%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           +++  L  C       T K +H  + + GL     +  +L++ Y K   +  A  +L+EM
Sbjct: 465 NFMTILGACTIGSHGRTRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVILQEM 524

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
            ++   +W  ++  Y      ++ +  +   L L+ +  D   F S++ AC S  +   G
Sbjct: 525 DEQQITAWNVLINGYALHGRSREALEAYQK-LQLEAIPVDKVTFISVLNACTSSTSLAEG 583

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           K +H+  V      D +VK++L +MY+KCG   NAR +FDS+ ++++VSW  ML AYA+ 
Sbjct: 584 KMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQH 643

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G  ++ +++  +                               M +EGV + + +   S+
Sbjct: 644 GESEEVLKLIRK-------------------------------MEQEGVKL-NGITFVSV 671

Query: 245 VGACANFAVLELGKQ-IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RK 302
           + +C++  ++  G Q  H L    G E        +VD+  +   +  A+    +M    
Sbjct: 672 LSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEP 731

Query: 303 DVVSWTSII 311
            +V+W S++
Sbjct: 732 GIVTWASLL 740



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/269 (24%), Positives = 126/269 (46%), Gaps = 35/269 (13%)

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           MY++CG   +A A F  I+ +N VSW  M+SAY+     ++A+ +F              
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHA------------ 48

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
                              M  EGV   + + L +++ +C +F  L  G  +H L +  G
Sbjct: 49  -------------------MLLEGV-APNAITLVAVLNSCGSFRELRDGILVHALSLERG 88

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII-VGTAQHGQAEETLALY 327
           +     ++ A+++MY KC  ++ A+ +F  M  K+VV+W +++ V + Q    +  + L+
Sbjct: 89  FFQNTLVATALLNMYGKCGTLLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCWKLAVELF 148

Query: 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
             M+  GVK N +TF+ ++ +      + KG K   S + +   +  +   T L++  ++
Sbjct: 149 TRMLLEGVKANVITFLNVLNSVVDPDALRKG-KFIHSCVRESEHSLDVFVNTALVNTYTK 207

Query: 388 SGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G L +A  +   MP      TW +++SA
Sbjct: 208 CGSLTDARKVFDGMPCRS-VGTWNSMISA 235



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 73/182 (40%), Gaps = 13/182 (7%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L  C         K +H+  ++ GL     + N L + Y KC  ++ A  + + MP
Sbjct: 567 FISVLNACTSSTSLAEGKMIHSNAVECGLDSDVIVKNALTNMYSKCGSMENARRIFDSMP 626

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            R  VSW  +L AY Q    ++ + +   M   + ++ +   F S++ +C   G    G 
Sbjct: 627 IRSAVSWNGMLQAYAQHGESEEVLKLIRKM-EQEGVKLNGITFVSVLSSCSHAGLIAEG- 684

Query: 126 QVHACFVLSPFCDDDVVK------SSLVDMYAKCGLPNNARAVFDSIKLKNS-VSWTAML 178
               C        D  ++        LVD+  + G    A      + L+   V+W ++L
Sbjct: 685 ----CQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLL 740

Query: 179 SA 180
            A
Sbjct: 741 GA 742


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 219/587 (37%), Positives = 344/587 (58%), Gaps = 6/587 (1%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LHA +++ GL     +   L  AY     + ++  LL        + + S + A++   L
Sbjct: 43  LHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRGL 102

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
               +++ S ML+   L   H + ASL  AC  L    LG+ +HA         D  V +
Sbjct: 103 HLPGLALLSDMLSEGLLPTAHTLSASL-PACRGLS---LGRALHAYAFKLALSGDSYVAT 158

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +L+ MYA+ G    ARA+FD +   + VS TAML+ YA  G   DA  +F+  P ++   
Sbjct: 159 ALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFIC 218

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W A++ G  Q     +A   F  M R   +  D + +  ++ A A    +E GK +H  V
Sbjct: 219 WNAMIDGYTQHGKPNEALQLFRRMLRSSAE-PDEVTVVLVLSAVAQLGTVESGKWLHSYV 277

Query: 265 I-ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
             +   +  + ++ A+VDMY KC  +  A  +F  +  KD+V W ++I G A HG + + 
Sbjct: 278 KNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGDSRKA 337

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           L ++ ++   G+ P ++TF+GL+ ACSH GLV +GR  F+SM  +YGI P ++HY C++D
Sbjct: 338 LEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYGCMVD 397

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           LL R+G ++EA +L++++   PD   W +LL+AC+ H+N  +G R+A+ L++    +   
Sbjct: 398 LLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVANGLANSGM 457

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
           YILLSN+YA+   W+ V++VR +M    ++KEPG S IE  +  + F AG+ SHP  DEI
Sbjct: 458 YILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAIEIDRKVYEFVAGDMSHPCTDEI 517

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
           + +L +++A +K  G+VP T  VLHD+++  KE+ L  HSE+LAVA+GL+ S PG+ +++
Sbjct: 518 YAMLDKMNALVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLAVAFGLISSRPGSTIKI 577

Query: 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           VKNLR C DCH V+K+IS+IT R+IV RD  R+HHF DG C+C D+W
Sbjct: 578 VKNLRACSDCHAVLKLISKITSRKIVFRDRNRFHHFVDGSCTCGDYW 624



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 35/215 (16%)

Query: 23  KTLHAQIIKLGLHQ------------------------YGPLPN-------TLIDAYGKC 51
           + LHA   KL L                          +  +P+        ++  Y   
Sbjct: 139 RALHAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANM 198

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
             +  A  L + +P++D + W +++  Y Q   P + + +F  ML     +PD      +
Sbjct: 199 GALDDARRLFDGLPRKDFICWNAMIDGYTQHGKPNEALQLFRRMLR-SSAEPDEVTVVLV 257

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKN 170
           + A   LG    GK +H+    S     +V V ++LVDMY KCG   +A AVF  I  K+
Sbjct: 258 LSAVAQLGTVESGKWLHSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKD 317

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLW 205
            V W AM++ YA  G  + A+E+F Q  +R+  LW
Sbjct: 318 IVVWNAMINGYAMHGDSRKALEMFVQ--LRDQGLW 350



 Score = 41.6 bits (96), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 53/241 (21%), Positives = 93/241 (38%), Gaps = 39/241 (16%)

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           +S++ AC+         ++H  V+  G +S   ++  +   YA    +  +  + GR + 
Sbjct: 28  ASLLAACST---ARRASELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKD 84

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
              + +TS I   +  G     LAL  +M+S G+ P   T    + AC  + L   GR L
Sbjct: 85  PTTIFYTSAIHAHSSRGLHLPGLALLSDMLSEGLLPTAHTLSASLPACRGLSL---GRAL 141

Query: 362 ----FKSMI--EDYGITPSLQHY------------------------TCLLDLLSRSGHL 391
               FK  +  + Y  T  L  Y                        T +L   +  G L
Sbjct: 142 HAYAFKLALSGDSYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGAL 201

Query: 392 DEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPEDPSSYILLSN 449
           D+A  L   +P   D   W A++     H       ++   +L  S +P++ +  ++LS 
Sbjct: 202 DDARRLFDGLP-RKDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSA 260

Query: 450 V 450
           V
Sbjct: 261 V 261


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/590 (37%), Positives = 324/590 (54%), Gaps = 35/590 (5%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
            +H   +K GL     + N LID YGK  ++  AH +   M  RD V+W SI++A  Q  
Sbjct: 189 VMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGG 248

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
                + +F  M+    + PD     SL  A    G     K VH C+V           
Sbjct: 249 KVAAAVELFHGMME-SGVCPDVLTLVSLASAVAQCGDELGAKSVH-CYV----------- 295

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
                           R  +D   + + ++  AM+  YA+  +   A ++F+  P R++ 
Sbjct: 296 ---------------RRRGWD---VGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVV 337

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRR-EGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
            W  L++G +Q+    +A   + +M   EG+  +    +S ++ A +    L+ G ++H 
Sbjct: 338 SWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFVS-VLPAYSYLGGLQQGMRMHA 396

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L I  G    ++++  ++D+YAKC  ++ A  +F  M R+    W +II G   HG   +
Sbjct: 397 LSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAK 456

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L+L+ +M    +KP+ VTFV L+ ACSH GLV +GR  F  M   YGI P  +HYTC++
Sbjct: 457 ALSLFSQMQQEEIKPDHVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMV 516

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+L R+G LDEA   I++MP +PD   W ALL AC+ H N EMG   + +L  L PE+  
Sbjct: 517 DMLGRAGQLDEAFEFIQSMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVG 576

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETS--HPLK 500
            Y+L+SN+YA    W  V  VR L+    ++K PG+S +E      +FY+G  +  HP  
Sbjct: 577 YYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPGWSSMEVKGSVSVFYSGTQTEPHPQH 636

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
           +EI   L +L A+MK  GYVPD S VL D+E+ EKE+ L  HSERLA+A+G++ + PGT 
Sbjct: 637 EEIQRGLHDLLAKMKSAGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPGTP 696

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           L + KNLRVCGDCH   K IS+IT+REI+VRDA R+HHFKDG CSC DFW
Sbjct: 697 LHIYKNLRVCGDCHSATKYISKITEREIIVRDANRFHHFKDGHCSCGDFW 746



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 195/406 (48%), Gaps = 44/406 (10%)

Query: 21  TVKTLHAQIIKLGL-HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           +   LHA  ++LGL H       +L+ AY +   V  A+ + +EMP+RD  +W ++L+  
Sbjct: 84  SAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGL 143

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            +       +++   M+  + +  D    +S++  C  LG   L   +H   V      +
Sbjct: 144 CRNTRAADAVTLLGRMVG-EGVAGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGE 202

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF----E 195
             V ++L+D+Y K G+   A  VF  + L++ V+W +++SA  + G+   A+E+F    E
Sbjct: 203 LFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMME 262

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
                ++    +L S + Q  +E+ A      +RR G D+ D                  
Sbjct: 263 SGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGD------------------ 304

Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
                            +   NA+VDMYAK S I AA+ +F  +  +DVVSW ++I G  
Sbjct: 305 -----------------IIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYM 347

Query: 316 QHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
           Q+G A E + +Y++M +  G+KP + TFV ++ A S++G + +G ++    I+  G+   
Sbjct: 348 QNGLANEAIRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKT-GLNLD 406

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           +   TCL+DL ++ G L EA  L + MP     P W A+++    H
Sbjct: 407 VYVTTCLIDLYAKCGKLVEAMFLFEHMPRRSTGP-WNAIIAGLGVH 451



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 151/344 (43%), Gaps = 44/344 (12%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL--PNN 158
           L+PD F F  LV+A     +     Q+HAC +                   + GL  PN 
Sbjct: 65  LRPDSFTFPPLVRAAPGPASA---AQLHACAL-------------------RLGLLHPN- 101

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
              VF S          +++ AY R GR  +A  +F++ P R++  W A++SGL ++   
Sbjct: 102 ---VFAS---------GSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNTRA 149

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            DA      M  EGV   D + LSS++  C       L   +H   +  G    LF+ NA
Sbjct: 150 ADAVTLLGRMVGEGV-AGDAVTLSSVLPMCVVLGDRALALVMHVYAVKHGLSGELFVCNA 208

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++D+Y K   +  A  +FG M  +D+V+W SII    Q G+    + L+  M+ +GV P+
Sbjct: 209 LIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVELFHGMMESGVCPD 268

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI-TPSLQHYTCLLDLLSRSGHLDEAENL 397
            +T V L  A +  G    G K     +   G     +     ++D+ ++   +D A+ +
Sbjct: 269 VLTLVSLASAVAQCG-DELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKV 327

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS---LKP 438
              +P + D  +W  L++    +       R+ N + +   LKP
Sbjct: 328 FDNLP-DRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKP 370


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/611 (34%), Positives = 334/611 (54%), Gaps = 26/611 (4%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLG-LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
            L  C++ +     + +H   ++ G L +   +   L+D Y  C   +    + + + +R 
Sbjct: 541  LPACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRT 600

Query: 69   HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
               W ++L  Y +     + + +F  M++  +  P+   FAS++ AC         + +H
Sbjct: 601  VAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIH 660

Query: 129  ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
               V   F  D  V+++L+DMY++ G    ++ +F  +  ++ VSW  M++     GR  
Sbjct: 661  GYIVKRGFGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYD 720

Query: 189  DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP--LVLSSIVG 246
            DA+ +  +                +Q R   D   +F++   +G     P  + L +++ 
Sbjct: 721  DALNLLHE----------------MQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLP 764

Query: 247  ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
             CA  A L  GK+IH   +       + + +A+VDMYAKC  +  A  +F +M  ++V++
Sbjct: 765  GCAALAALGKGKEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVIT 824

Query: 307  WTSIIVGTAQHGQAEETLALYDEMVSAG------VKPNEVTFVGLIYACSHVGLVGKGRK 360
            W  +I+    HG+ EE L L+  M + G      ++PNEVT++ +  ACSH G+V +G  
Sbjct: 825  WNVLIMAYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLH 884

Query: 361  LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE-PTWAALLSACKH 419
            LF +M   +G+ P   HY CL+DLL RSG + EA  LI  MP   ++   W++LL AC+ 
Sbjct: 885  LFHTMKASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRI 944

Query: 420  HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
            H++ E G   A HL  L+P   S Y+L+SN+Y+SA +W     VRK M  M V+KEPG S
Sbjct: 945  HQSVEFGEIAAKHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCS 1004

Query: 480  YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL 539
            +IE G   H F +G+ SHP   E+ E L  L   M++ GYVPD S VLH+++ +EKE  L
Sbjct: 1005 WIEHGDEVHKFLSGDASHPQSKELHEYLETLSQRMRKEGYVPDISCVLHNVDDEEKETML 1064

Query: 540  FWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
              HSERLA+A+GLL + PGT +RV KNLRVC DCH+  K+IS+I  REI++RD  R+HHF
Sbjct: 1065 CGHSERLAIAFGLLNTPPGTTIRVAKNLRVCNDCHVATKIISKIVDREIILRDVRRFHHF 1124

Query: 600  KDGKCSCNDFW 610
             +G CSC D+W
Sbjct: 1125 ANGTCSCGDYW 1135



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 205/414 (49%), Gaps = 52/414 (12%)

Query: 14  ARHQIALTVKTLHAQIIKLGLHQYGP-----LPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           A H + L  K +HA + K G   + P     + N+L++ YGKC  +  A  + +++P RD
Sbjct: 342 AVHDLCLG-KQIHAHVFKFG---HAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRD 397

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSL-GATRLGKQV 127
           HVSW S++    +    + ++ +F  ML+ + + P  F   S+  AC  + G  RLGKQV
Sbjct: 398 HVSWNSMIATLCRFEEWELSLHLFRLMLS-ENVDPTSFTLVSVAHACSHVRGGVRLGKQV 456

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           HA + L          ++LV MYA+ G  N+A+A+F     K+ VSW  ++S+ +++ R 
Sbjct: 457 HA-YTLRNGDLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRF 515

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
           ++A+          ++++  +V G+                R +GV       L+S++ A
Sbjct: 516 EEAL----------MYVYLMIVDGV----------------RPDGV------TLASVLPA 543

Query: 248 CANFAVLELGKQIHGLVIALG--YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
           C+    L +G++IH   +  G   E+  F+  A+VDMY  C      + +F  + R+ V 
Sbjct: 544 CSQLERLRIGREIHCYALRNGDLIENS-FVGTALVDMYCNCKQPKKGRLVFDGVVRRTVA 602

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
            W +++ G A++   ++ L L+ EM+S +   PN  TF  ++ AC    +      +   
Sbjct: 603 VWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHGY 662

Query: 365 MIE-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417
           +++  +G    +Q+   L+D+ SR G ++ ++ +   M  + D  +W  +++ C
Sbjct: 663 IVKRGFGKDKYVQN--ALMDMYSRMGRVEISKTIFGRMN-KRDIVSWNTMITGC 713



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 108/390 (27%), Positives = 172/390 (44%), Gaps = 72/390 (18%)

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +R    W  +L +   ++  +  IS ++ MLA      D+F F +++KA  ++    LGK
Sbjct: 292 RRSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPP-DNFAFPAVLKAAAAVHDLCLGK 350

Query: 126 QVHA-CFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           Q+HA  F         V V +SLV+MY KCG    AR VFD I  ++ VSW +M++   R
Sbjct: 351 QIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCR 410

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
                     FE+        W               + + F  M  E VD      L S
Sbjct: 411 ----------FEE--------WEL-------------SLHLFRLMLSENVDPTS-FTLVS 438

Query: 244 IVGACANF-AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           +  AC++    + LGKQ+H   +  G +   + +NA+V MYA+   +  AK +FG    K
Sbjct: 439 VAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARLGRVNDAKALFGVFDGK 497

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           D+VSW ++I   +Q+ + EE L     M+  GV+P+ VT   ++ ACS +  +  GR++ 
Sbjct: 498 DLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREIH 557

Query: 363 ------KSMIEDYGITPSLQHYTC-------------------------LLDLLSRSGHL 391
                   +IE+  +  +L    C                         LL   +R+   
Sbjct: 558 CYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFD 617

Query: 392 DEAENLIKAM----PFEPDEPTWAALLSAC 417
           D+A  L   M     F P+  T+A++L AC
Sbjct: 618 DQALRLFVEMISESEFCPNATTFASVLPAC 647



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 100/193 (51%), Gaps = 10/193 (5%)

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGY--ESCLFISNAIVDMYAKCSDIIAAKD 294
           D     +++ A A    L LGKQIH  V   G+   S + ++N++V+MY KC D+ AA+ 
Sbjct: 329 DNFAFPAVLKAAAAVHDLCLGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQ 388

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV-G 353
           +F  +  +D VSW S+I    +  + E +L L+  M+S  V P   T V + +ACSHV G
Sbjct: 389 VFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRG 448

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYT--CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
            V  G+++    + +      L+ YT   L+ + +R G +++A+ L      + D  +W 
Sbjct: 449 GVRLGKQVHAYTLRN----GDLRTYTNNALVTMYARLGRVNDAKALFGVFDGK-DLVSWN 503

Query: 412 ALLSACKHHRNTE 424
            ++S+   +   E
Sbjct: 504 TVISSLSQNDRFE 516


>gi|449434268|ref|XP_004134918.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
 gi|449533166|ref|XP_004173548.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Cucumis sativus]
          Length = 712

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/569 (37%), Positives = 324/569 (56%), Gaps = 34/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+++  +     V+ A  L E+MP R+ +SW S++   +      + + +F  MLA    
Sbjct: 178 NSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGRSFEALVVFHKMLA--SF 235

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +      A  + AC ++    +G Q+H   V + +C ++ + +SL+  YA C L +NA +
Sbjct: 236 KATSSTLACALTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASS 295

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F+     ++VS                          RN+ +WTAL++G   +    DA
Sbjct: 296 IFN-----DNVS--------------------------RNVVVWTALLTGYGLNCRHTDA 324

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M R  V + +   L+S + +C     ++ G+++H +   LG ES +F+SN++V 
Sbjct: 325 LQVFKGMMRMSV-LPNQSSLTSALNSCCGLEAVDRGREVHAVAHKLGLESDIFVSNSLVV 383

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  I     +F RM RK+VVSW SIIVG AQHG     L L+ +M+   V P+E+T
Sbjct: 384 MYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRWALTLFAQMIRTRVDPDEIT 443

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
             GL+ AC H G++ KGR  FK   +++GI  + +HY+ ++DLL R G L+EAE LI  M
Sbjct: 444 LAGLLSACGHSGMLTKGRCFFKHFGKNFGIEMTNEHYSSMVDLLGRYGQLEEAEALIHIM 503

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P + +   W ALLS+  +H N  +  R A  +L L+P   ++Y LLSN+YAS   W  VS
Sbjct: 504 PGKANYMVWLALLSSSINHSNVHVAERAAKCVLDLQPNCSAAYTLLSNLYASTGKWTEVS 563

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           K+RK M    + K+PG S+I      H F +G+ SHPL  +I++ L  L  ++K  GYVP
Sbjct: 564 KIRKKMKDEGILKQPGSSWITIKGIKHNFISGDQSHPLSRKIYQKLEWLGGKLKELGYVP 623

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           D     HD+E ++KE  L +HSERLA+ +GL+ +V G+ + V+KNLR+CGDCH  +K+ S
Sbjct: 624 DPKFSFHDVETEQKEEMLSYHSERLAIGFGLISTVEGSTIIVMKNLRICGDCHNAVKLTS 683

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++  REIVVRD +R+HHF +G CSC D+W
Sbjct: 684 KVVGREIVVRDPSRFHHFHNGTCSCGDYW 712



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/383 (22%), Positives = 174/383 (45%), Gaps = 15/383 (3%)

Query: 39  PLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
           P  N L+  + +   +  A  L  +M       +  ++  Y      +  + +F  M   
Sbjct: 51  PPSNYLLSFHLRNGRIDEARSLFNKMSSPGVNLYTMMIGGYADEGRLEDALKLFYEMPVK 110

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPN 157
           D +      + S++K C      + G    AC +     + +VV  +++++   + G   
Sbjct: 111 DLIS-----WNSMLKGC-----LKCGDLTMACNMFDKMSERNVVSWTTIINGLLEFGRVE 160

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
            A  +F  +  K+  +W +M+  +  +GR +DA+E+FE+ P RN+  WT+++ GL  +  
Sbjct: 161 VAECLFRVMPTKDVTAWNSMVHGFFSNGRVEDAIELFEKMPNRNVISWTSVIGGLDHNGR 220

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             +A   F +M          L  +  + ACAN     +G QIHGL++  GY    +IS 
Sbjct: 221 SFEALVVFHKMLASFKATSSTLACA--LTACANICTPFIGVQIHGLIVKTGYCFNEYISA 278

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           +++  YA C  I  A  IF     ++VV WT+++ G   + +  + L ++  M+   V P
Sbjct: 279 SLISFYANCKLIDNASSIFNDNVSRNVVVWTALLTGYGLNCRHTDALQVFKGMMRMSVLP 338

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           N+ +    + +C  +  V +GR++  ++    G+   +     L+ + ++ GH+++   +
Sbjct: 339 NQSSLTSALNSCCGLEAVDRGREV-HAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAV 397

Query: 398 IKAMPFEPDEPTWAALLSACKHH 420
              M    +  +W +++  C  H
Sbjct: 398 FTRMS-RKNVVSWNSIIVGCAQH 419



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 84/187 (44%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA          +H  I+K G      +  +LI  Y  C L+  A  +  +   R+ 
Sbjct: 246 LTACANICTPFIGVQIHGLIVKTGYCFNEYISASLISFYANCKLIDNASSIFNDNVSRNV 305

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V W ++LT Y         + +F  M+ +  L P+     S + +C  L A   G++VHA
Sbjct: 306 VVWTALLTGYGLNCRHTDALQVFKGMMRMSVL-PNQSSLTSALNSCCGLEAVDRGREVHA 364

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                    D  V +SLV MY KCG  N+  AVF  +  KN VSW +++   A+ G  + 
Sbjct: 365 VAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQHGFGRW 424

Query: 190 AMEIFEQ 196
           A+ +F Q
Sbjct: 425 ALTLFAQ 431



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 77/165 (46%), Gaps = 13/165 (7%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA   KLGL     + N+L+  Y KC  +     +   M +++ VSW SI+    Q 
Sbjct: 360 REVHAVAHKLGLESDIFVSNSLVVMYTKCGHINDGIAVFTRMSRKNVVSWNSIIVGCAQH 419

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +  +++F+ M+   ++ PD    A L+ ACG  G    G+    CF    F  +  +
Sbjct: 420 GFGRWALTLFAQMIR-TRVDPDEITLAGLLSACGHSGMLTKGR----CF-FKHFGKNFGI 473

Query: 143 K------SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
           +      SS+VD+  + G    A A+   +  K N + W A+LS+
Sbjct: 474 EMTNEHYSSMVDLLGRYGQLEEAEALIHIMPGKANYMVWLALLSS 518


>gi|224129498|ref|XP_002320601.1| predicted protein [Populus trichocarpa]
 gi|222861374|gb|EEE98916.1| predicted protein [Populus trichocarpa]
          Length = 629

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/601 (36%), Positives = 347/601 (57%), Gaps = 14/601 (2%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL---VQYAHHLLEEMPQRDHVSWASILTA 78
           +K +HA  IK G   + PL    +  +        ++YA     ++   +  SW +I+ A
Sbjct: 31  LKQIHAHFIKTG-QIHHPLAAAELLKFLTLSTQREIKYARKFFSQIHHPNCFSWNTIIRA 89

Query: 79  YNQANLPQ-------KTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
              ++          + +  FS ML    ++P+ F F  ++KAC  L     GKQ+H   
Sbjct: 90  LADSDDDDLFHVNSLEALLYFSHMLTDGLVEPNKFTFPCVLKACAKLARIEEGKQLHGFV 149

Query: 132 VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKKDA 190
           V      D+ V+S+LV +Y  CG   +A  +F   +L+ N V W  M+  Y R G  + +
Sbjct: 150 VKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGNVVLWNVMIDGYVRMGDLRAS 209

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
            E+F+  P +++  W  ++SG  Q+ +  +A   F +M+   V   + + L S++ A + 
Sbjct: 210 RELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDMQLGDVP-PNYVTLVSVLPAVSR 268

Query: 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTS 309
              +ELGK +H        E    + +A++DMY+KC  I  A  +F  +R +K+ ++W++
Sbjct: 269 LGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSIDKAVQVFEGIRNKKNPITWSA 328

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           II G A HG+A + L  +  M  AGV P++V ++G++ ACSH GLV +GR ++  M+   
Sbjct: 329 IIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSACSHAGLVEEGRSIYYHMVNIV 388

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G+ P ++HY C++DLL R+G L+EAE LI  MP +PD+    ALL ACK H N EMG R+
Sbjct: 389 GLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDDVILKALLGACKMHGNIEMGERI 448

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  L+   P D  SY+ LSN++AS   W+ V KVR  M  ++++K+PG S+IE     H 
Sbjct: 449 AKILMGWYPHDSGSYVALSNMFASEGNWEGVVKVRLKMKELDIRKDPGCSWIELDGVIHE 508

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F   + SHP  + I  +L E+   ++  GY P+T+ VL +M++KEK+  L +HSE++A+A
Sbjct: 509 FLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPNTTQVLLNMDEKEKQSALHYHSEKIAIA 568

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GL+ + P T L++VKNLRVC DCH  +K++S+I  R+I+VRD  R+HHF++G CSC D+
Sbjct: 569 FGLISTRPQTPLQIVKNLRVCEDCHSSIKLVSKIYNRKIIVRDRKRFHHFENGSCSCMDY 628

Query: 610 W 610
           W
Sbjct: 629 W 629



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 182/417 (43%), Gaps = 93/417 (22%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLG--------------------------------LHQY 37
           L+ CA+       K LH  ++KLG                                L   
Sbjct: 130 LKACAKLARIEEGKQLHGFVVKLGLVSDEFVRSNLVRVYVMCGAMKDAHVLFYQTRLEGN 189

Query: 38  GPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLA 97
             L N +ID Y +   ++ +  L + MP +  VSW  +++   Q    ++ I +F  M  
Sbjct: 190 VVLWNVMIDGYVRMGDLRASRELFDSMPNKSVVSWNVMISGCAQNGHFKEAIEMFHDM-Q 248

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
           L  + P++    S++ A   LGA  LGK VH     +    DDV+ S+L+DMY+KCG  +
Sbjct: 249 LGDVPPNYVTLVSVLPAVSRLGAIELGKWVHLFAEKNEIEIDDVLGSALIDMYSKCGSID 308

Query: 158 NARAVFDSIK-LKNSVSWTAMLSAYARSGRKKDAMEIF---EQAPVR-NLFLWTALVS-- 210
            A  VF+ I+  KN ++W+A++   A  GR +DA++ F   +QA V  +  ++  ++S  
Sbjct: 309 KAVQVFEGIRNKKNPITWSAIIGGLAMHGRARDALDHFWRMQQAGVTPSDVVYIGVLSAC 368

Query: 211 ---GLVQSRNEIDAFYSFIEM-----RREG----VDIV--------------------DP 238
              GLV+    I  +Y  + +     R E     VD++                    D 
Sbjct: 369 SHAGLVEEGRSI--YYHMVNIVGLLPRIEHYGCMVDLLGRAGCLEEAEQLILNMPVKPDD 426

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIA-LGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297
           ++L +++GAC     +E+G++I  +++    ++S  ++  A+ +M+A   +      +  
Sbjct: 427 VILKALLGACKMHGNIEMGERIAKILMGWYPHDSGSYV--ALSNMFASEGNWEGVVKVRL 484

Query: 298 RMRRKDV-----VSWTSI-------IVGTAQHGQAEETLALYDEMV----SAGVKPN 338
           +M+  D+      SW  +       +V    H +AE   ++ +EM     S G +PN
Sbjct: 485 KMKELDIRKDPGCSWIELDGVIHEFLVEDDSHPRAEGIHSMLEEMSDRLRSVGYRPN 541


>gi|357139833|ref|XP_003571481.1| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like [Brachypodium distachyon]
          Length = 617

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/559 (37%), Positives = 321/559 (57%), Gaps = 8/559 (1%)

Query: 53  LVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLV 112
           L+  A HL + +P+ D VS+ ++L+ +  A   +    +F+ M A  +         S +
Sbjct: 66  LLADARHLFDRIPRPDAVSYNTLLSCHFAAGDVRGARDLFAAMPATARNVTSWNTMLSGL 125

Query: 113 KACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF-DSIKLKNS 171
              G++G  R      A F+  P   + +  +++V  +A  G    A   F D+   +N+
Sbjct: 126 SRSGAVGEAR------AVFLAMP-ARNSISWNAMVSCFAHAGDMCAAEECFEDAPDKENA 178

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           V WTAM+S Y  SG  + AM+ FE  PVR+L  W A+V+G V++    DA + F  M R+
Sbjct: 179 VLWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRD 238

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
                +   LSS++  C+N + L  G+Q+H     L     +    ++V MY KC D+  
Sbjct: 239 ADVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDG 298

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           A  +F  MR +DV++W ++I G A HG   E + L+++M S GV+PN +TFV ++ AC H
Sbjct: 299 ACKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEKMKSQGVEPNWITFVAVLTACIH 358

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
            G+   G + F+ M E YGI   + HY+C++DLL R+G L+ A +LI++MPF+P    + 
Sbjct: 359 TGMCDFGMQCFERMQEVYGIEARVDHYSCMVDLLCRAGSLERAVSLIRSMPFQPHPSAYG 418

Query: 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
            LL+A + ++N E     A  L+   P++  +Y+ L+N+YA A  W  VS+VR+ M    
Sbjct: 419 TLLNASRVYKNMEFAEFAAGKLIEQNPQNAGAYVQLANIYAVANQWADVSRVRRWMKDNA 478

Query: 472 VKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDME 531
           V K PGYS++E     H+F + +  HP    I E L +L+  MK  GYVPD    LHD++
Sbjct: 479 VVKTPGYSWVEINGVIHVFRSNDRLHPQLSLIHERLCQLEERMKAMGYVPDLDFALHDVD 538

Query: 532 QKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVR 591
           +  K + L  HSE+LA+A+GLL + PG  LR+ KNLRVCGDCH   K+IS+I  REI++R
Sbjct: 539 ESLKVQMLMRHSEKLAIAFGLLSTAPGITLRIFKNLRVCGDCHTAAKLISKIEDREIILR 598

Query: 592 DATRYHHFKDGKCSCNDFW 610
           D TR+HHF+ G CSC D+W
Sbjct: 599 DTTRFHHFRSGHCSCGDYW 617



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 82/157 (52%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   ++  Y     V+ A    E MP R  VSW +++  Y + +  +  + +F TM+   
Sbjct: 180 LWTAMVSGYMDSGHVEKAMQFFEAMPVRSLVSWNAVVAGYVKNSRAEDALWVFKTMVRDA 239

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            ++P+    +S++  C +L A   G+QVH      P        +SLV MY KCG  + A
Sbjct: 240 DVRPNESTLSSVLLGCSNLSALGFGRQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGA 299

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             +F  +++++ ++W AM+S YA  G  ++A+E+FE+
Sbjct: 300 CKLFSEMRIRDVIAWNAMISGYAHHGDGREAIELFEK 336



 Score = 46.2 bits (108), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 4/109 (3%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H    KL L +      +L+  Y KC  +  A  L  EM  RD ++W ++++ Y   
Sbjct: 265 RQVHQWCTKLPLSRRVTAGTSLVSMYCKCGDLDGACKLFSEMRIRDVIAWNAMISGYAHH 324

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
              ++ I +F  M +   ++P+   F +++ AC   G    G Q   CF
Sbjct: 325 GDGREAIELFEKMKS-QGVEPNWITFVAVLTACIHTGMCDFGMQ---CF 369


>gi|449450898|ref|XP_004143199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Cucumis sativus]
          Length = 603

 Score =  412 bits (1058), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/591 (38%), Positives = 333/591 (56%), Gaps = 36/591 (6%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           + H+  +KLG        N LI+ Y +   +  AH L +EMP  + VSW S++  Y    
Sbjct: 45  STHSIALKLGFLNNTVNVNHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDNG 104

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
            P   + +F  ML    + P+ F FA+ +KAC  L   R G+  HA   +  +  + VV 
Sbjct: 105 QPSTALFLFGEMLR-SPVVPNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVC 163

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           SSL+DMY KC     AR VF+S+  KN VS                              
Sbjct: 164 SSLIDMYGKCNDVVKARGVFNSMSCKNIVS------------------------------ 193

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            WT++++   Q+ +  +A   F E      +  +P +L+S++ ACA+   L  GK +HG 
Sbjct: 194 -WTSMIAAYAQNAHGDEALKVFREFTSLSSEHPNPYMLASVISACASLGRLVSGKVMHGA 252

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
            I+LG +S   +++ +VDMYAKC  +  +  +F R+    V+ +TS+IV TA++G   ++
Sbjct: 253 AISLGCDSSEVVASVLVDMYAKCGSLDYSDKVFNRISNPSVIPYTSMIVSTAKYGFGRKS 312

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           L L++EMV  G+KPN +T VG+++ACSH GL  +G     SM E YGI P  +HYTC++D
Sbjct: 313 LQLFEEMVRKGLKPNHITLVGVLHACSHSGLPNEGLYYLTSMYEKYGIMPETKHYTCVVD 372

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPT--WAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +L+R G LD+A +L K+M   PD+    W ALLSA + H   ++       L++   +  
Sbjct: 373 MLARVGELDKAFDLAKSMDVAPDDKALLWGALLSASRCHGRVDIAAEACQQLVNSNRQVA 432

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGE-TSHPLK 500
            +Y+ LSNVYASA   +   K+R  M    V KEPG S+IE    S+IFYAGE TS P  
Sbjct: 433 GAYVTLSNVYASAGDMEKAHKLRVEMKRTGVHKEPGCSWIEIKDSSYIFYAGEITSCPRG 492

Query: 501 DEIFELLTELDAEMKRRGYVPDTSS-VLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
           DE+  LL ELD +MK RGYV      V  D+E++ +E +++ HSERLA+ +GL+    G 
Sbjct: 493 DEVLCLLRELDQKMKDRGYVRGRKGLVFVDIEEEAEEEKVWLHSERLALGFGLISIPKGL 552

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +R++KNLR+C DCH   K+IS I +RE VVRD  R+HHFK+G C+CN FW
Sbjct: 553 TIRIMKNLRMCSDCHEAFKLISEIMEREFVVRDINRFHHFKNGCCTCNGFW 603


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/571 (36%), Positives = 330/571 (57%), Gaps = 37/571 (6%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+L+D Y KCD +     L +EMP+RD+VS+  I+ AY         + +F  M    KL
Sbjct: 275 NSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREM---QKL 331

Query: 102 QPDHFV--FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
             D  V  +A+++   GSL    +GKQ+HA  VL     +D++ ++L+DMY+KCG+ + A
Sbjct: 332 GFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAA 391

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           ++ F +   K+++S                               WTAL++G VQ+    
Sbjct: 392 KSNFSNRSEKSAIS-------------------------------WTALITGYVQNGQHE 420

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           +A   F +MRR G+   D    SSI+ A ++ A++ LG+Q+H  +I  GY+S +F  + +
Sbjct: 421 EALQLFSDMRRAGLR-PDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVL 479

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           VDMYAKC  +  A   F  M  ++ +SW ++I   A +G+A+  + +++ M+  G  P+ 
Sbjct: 480 VDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDS 539

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           VTF+ ++ ACSH GL  +  K F  M   Y I+P  +HY C++D L R G   + + ++ 
Sbjct: 540 VTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLV 599

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
            MPF+ D   W ++L +C+ H N E+    A+ L  ++P D + Y++LSN+YA A  W+ 
Sbjct: 600 EMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWED 659

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
            + V+K+M    V+KE GYS++E  +  + F + + + P+ DEI + L  L  EM ++GY
Sbjct: 660 AACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGY 719

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
            PD +  LH ++ + K   L +HSERLA+A+ L+ +  GT +R++KNL  C DCH V+KM
Sbjct: 720 KPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKM 779

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           IS+I  R+I+VRD+ R+HHFKDG CSC D+W
Sbjct: 780 ISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 215/428 (50%), Gaps = 36/428 (8%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           TV +LH   IK GL  +  + NTL+DAY K  L+  A  +  EM  +D V++ +++   +
Sbjct: 153 TVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCS 212

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           +  L  + + +F+ M     +   HF F+S++     +    LG QVHA  + S    + 
Sbjct: 213 KEGLHTQALQLFAAMRRAG-IPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNV 271

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V +SL+D Y+KC   ++ R +FD +  +++VS+  +++AYA                  
Sbjct: 272 FVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYA------------------ 313

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
               W    + +++          F EM++ G D    L  ++++    +   + +GKQI
Sbjct: 314 ----WNQCAATVLRL---------FREMQKLGFD-RQVLPYATMLSVAGSLPDVHIGKQI 359

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H  ++ LG  S   + NA++DMY+KC  + AAK  F     K  +SWT++I G  Q+GQ 
Sbjct: 360 HAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQH 419

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           EE L L+ +M  AG++P+  TF  +I A S + ++G GR+L   +I   G   S+   + 
Sbjct: 420 EEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRS-GYKSSVFSGSV 478

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           L+D+ ++ G LDEA      MP E +  +W A++SA  H+   +   ++   +L     +
Sbjct: 479 LVDMYAKCGCLDEALRTFDEMP-ERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCG-FN 536

Query: 441 PSSYILLS 448
           P S   LS
Sbjct: 537 PDSVTFLS 544



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 156/381 (40%), Gaps = 52/381 (13%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N ++ AY     +  A HL    P R+  +W  ++ A+  A      +S+F  ML  + +
Sbjct: 78  NLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLG-EGV 136

Query: 102 QPDHFVFASLVKACGSL------GATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
            PD     +++   G         A + G   H             V ++L+D Y K GL
Sbjct: 137 IPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHV-----------FVCNTLLDAYCKHGL 185

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
              AR VF  +  K++V++ AM+   ++ G    A+++F                     
Sbjct: 186 LAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFA-------------------- 225

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI 275
                       MRR G+        SSI+   A  A L LG Q+H LV+       +F+
Sbjct: 226 -----------AMRRAGIPATH-FTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFV 273

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
           +N+++D Y+KC  +   + +F  M  +D VS+  II   A +  A   L L+ EM   G 
Sbjct: 274 NNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGF 333

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
               + +  ++     +  V  G+++   ++   G+         L+D+ S+ G LD A+
Sbjct: 334 DRQVLPYATMLSVAGSLPDVHIGKQIHAQLVL-LGLASEDLLGNALIDMYSKCGMLDAAK 392

Query: 396 NLIKAMPFEPDEPTWAALLSA 416
           +       E    +W AL++ 
Sbjct: 393 SNFSNRS-EKSAISWTALITG 412



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/265 (26%), Positives = 125/265 (47%), Gaps = 12/265 (4%)

Query: 154 GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLV 213
           G  + ARA+FD +  KN  S   +LSAY+ SG    A  +F  +P RN   WT ++    
Sbjct: 57  GHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHA 116

Query: 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG--ACANFAVLELGKQIHGLVIALGYES 271
            +    DA   F  M  EGV I D + +++++    C           +H   I  G ++
Sbjct: 117 AAGRTSDALSLFRAMLGEGV-IPDRVTVTTVLNLPGCTV-------PSLHPFAIKFGLDT 168

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
            +F+ N ++D Y K   + AA+ +F  M  KD V++ ++++G ++ G   + L L+  M 
Sbjct: 169 HVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMR 228

Query: 332 SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
            AG+     TF  ++   + +  +  G ++   ++    +     + + LLD  S+   L
Sbjct: 229 RAGIPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNS-LLDFYSKCDCL 287

Query: 392 DEAENLIKAMPFEPDEPTWAALLSA 416
           D+   L   MP E D  ++  +++A
Sbjct: 288 DDMRRLFDEMP-ERDNVSYNVIIAA 311



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 37/204 (18%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH+ +I+ G        + L+D Y KC  +  A    +EMP+R+ +SW ++++AY   
Sbjct: 458 RQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHY 517

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACG-------------------------- 116
              +  I +F  ML      PD   F S++ AC                           
Sbjct: 518 GEAKNAIKMFEGMLHCG-FNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKE 576

Query: 117 -------SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI--- 166
                  +LG      QV    V  PF  D ++ +S++      G    AR   D +   
Sbjct: 577 HYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGM 636

Query: 167 KLKNSVSWTAMLSAYARSGRKKDA 190
           +  ++  +  + + YAR+G+ +DA
Sbjct: 637 EPTDATPYVILSNIYARAGQWEDA 660


>gi|359497290|ref|XP_002268807.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Vitis vinifera]
          Length = 719

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/595 (38%), Positives = 323/595 (54%), Gaps = 38/595 (6%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ-RDHVSWASILTAYN 80
           +  LH+  +  G   Y  + N L+  YGK   +  A  +   M   RD VSW S++ AY 
Sbjct: 157 IGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYG 216

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           Q     K + +F  M+    L  D F  AS++ A   L     G Q H   + + F  + 
Sbjct: 217 QHQEGSKALGLFQEMVR-RGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNS 275

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V S L+D+Y+KCG                              G   D  ++FE+    
Sbjct: 276 HVGSGLIDLYSKCG------------------------------GGMSDCRKVFEEITEP 305

Query: 201 NLFLWTALVSGLVQSRNEI-DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
           +L LW  +VSG  Q+   + DA   F +M+  G    D      ++ AC+N +    GKQ
Sbjct: 306 DLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPND-CSFVCVISACSNLSSPSQGKQ 364

Query: 260 IHGLVIALGYESC-LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           IH L +     S  + + NA++ MY+KC ++  A+ +F RM   + VS  S+I G AQHG
Sbjct: 365 IHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHG 424

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
              E+L L+  M+   + P  +TF+ ++ AC+H G V +G   F  M E + I P  +HY
Sbjct: 425 IEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHY 484

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
           +C++DLL R+G L EAENLI  MPF P    WA+LL AC+ H N E+  + AN +L L+P
Sbjct: 485 SCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEP 544

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
            + + Y++LSN+YASA  W+ V+ VRK M    VKK+PG S+IE  K  H+F A ++SHP
Sbjct: 545 SNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHP 604

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVL---HDMEQKEKERQLFWHSERLAVAYGLLKS 555
           +  EI+E L E+  +MKR GYVPD    L         EKE +L  HSE+LAVA+GL+ +
Sbjct: 605 MIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLIST 664

Query: 556 VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             G  + VVKNLR+CGDCH  +K IS I  REI VRDA R+H FK+G+CSC D+W
Sbjct: 665 KDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 178/383 (46%), Gaps = 51/383 (13%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           F  L+K C +      GK +H+ ++ S         +  + +Y+KCG    AR  F  I 
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
             N  S+ A+++AYA+  R   A ++F+Q P  +L  +  L+S          A   F  
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           MR  G+D+ D   LS+++ AC +   + L  Q+H + ++ G++S + ++NA++  Y K  
Sbjct: 131 MREMGLDM-DGFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNG 187

Query: 288 DIIAAKDIF-GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
           D+  AK +F G    +D VSW S+IV   QH +  + L L+ EMV  G+  +  T   ++
Sbjct: 188 DLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVL 247

Query: 347 --YAC----------------------SHVG--------LVGKG----RKLFKSMIEDYG 370
             + C                      SHVG          G G    RK+F+ + E   
Sbjct: 248 TAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITE--- 304

Query: 371 ITPSLQHYTCLLDLLSRSGH-LDEAENLIKAMP---FEPDEPTWAALLSACKHHRNTEMG 426
             P L  +  ++   S++   L++A    + M    + P++ ++  ++SAC +  +   G
Sbjct: 305 --PDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQG 362

Query: 427 TRVANHLLSLKPEDPSSYILLSN 449
            ++  H L+LK + PS+ I + N
Sbjct: 363 KQI--HSLALKSDIPSNRISVDN 383



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 111/508 (21%), Positives = 208/508 (40%), Gaps = 106/508 (20%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQY------ 56
           +  + H L+ C   +   T K+LH+  IK  +       N  I  Y KC  + +      
Sbjct: 8   LQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQ 67

Query: 57  -------------------------AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISI 91
                                    AH L +++P+ D VS+ ++++AY         + +
Sbjct: 68  DISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGL 127

Query: 92  FSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYA 151
           FS M  +  L  D F  ++++ AC       L  Q+H+  V S F     V ++L+  Y 
Sbjct: 128 FSGMREMG-LDMDGFTLSAVITAC--CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYG 184

Query: 152 KCGLPNNARAVFDSI-KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVS 210
           K G  ++A+ VF  +  +++ VSW +M+ AY +      A+ +F+               
Sbjct: 185 KNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQ--------------- 229

Query: 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE 270
                           EM R G++ VD   L+S++ A      L  G Q HG +I  G+ 
Sbjct: 230 ----------------EMVRRGLN-VDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFH 272

Query: 271 SCLFISNAIVDMYAKCSDIIA-AKDIFGRMRRKDVVSWTSIIVGTAQHGQ-AEETLALYD 328
               + + ++D+Y+KC   ++  + +F  +   D+V W +++ G +Q+ +  E+ L  + 
Sbjct: 273 QNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFR 332

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
           +M   G +PN+ +FV +I ACS++    +G+++    ++    +  +     L+ + S+ 
Sbjct: 333 QMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKC 392

Query: 389 GHLDEAENLIKAMP----------------------------------FEPDEPTWAALL 414
           G+L +A  L   M                                     P   T+ ++L
Sbjct: 393 GNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVL 452

Query: 415 SACKHHRNTEMGTRVANHL---LSLKPE 439
           SAC H    E G    N +    +++PE
Sbjct: 453 SACAHTGRVEEGWNYFNMMKEKFNIEPE 480


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/592 (36%), Positives = 337/592 (56%), Gaps = 5/592 (0%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQ--YAHHLLEEMPQRDHVSWASILTAY 79
           +K +H Q++  GL     L    + +    +     Y++ +L++  +    +  S++ AY
Sbjct: 25  LKQIHTQLVINGLLNNRELLGQFVASIAVRNPTNLLYSNQILDQCAKPTLFALNSMIRAY 84

Query: 80  NQANLPQKTISIFSTML-ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
           +++  P K+   ++ +L + D + PD++ F  LV+ C    A   G  VH   +   F  
Sbjct: 85  SKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLVRTCAQ-SACEAGPAVHGALIKHGFEY 143

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  V+S L+ MYA+    ++   VF+S++  + V  T M+SA A+ G    A  +F+  P
Sbjct: 144 DPHVESGLIFMYAEMSCLSSCHRVFESVQKPDLVCQTTMVSACAKCGDIGFARNLFDSMP 203

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            R+   W A+++G  Q     +A   F  M+ +GV  V+ + + S+V AC +   L+ GK
Sbjct: 204 QRDFVSWNAMIAGYAQRGQSREALNLFKLMQMDGVK-VNEVSMISVVTACTHLGALDQGK 262

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
             H  +     +  + +  A+VDMY KC ++  A  +F  M  K+V +W++ I G A +G
Sbjct: 263 WAHAYIEKNKIQMTVNLGTALVDMYFKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNG 322

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
             ++ L L+  M   G+ PNE+TF+ ++  CS VG V +GR  F SM  D+GI P L+HY
Sbjct: 323 YGQKCLELFSFMKHEGIAPNEITFISVLKGCSVVGFVDEGRSHFDSMKRDHGIEPRLEHY 382

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
            C++DL  R+G L+EA N I  MP +P    W ALL+AC+ ++N E+G   +  L+ ++ 
Sbjct: 383 GCMVDLYGRAGRLEEALNFINTMPLKPHAGAWGALLNACRMYKNMELGEFASRKLIEVEG 442

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
           ++  +Y+ LSN+YA    W  VS VR+ M    + K PG S +E     H F++G+ SHP
Sbjct: 443 KNHGAYVSLSNIYADTGNWDRVSNVRQSMKAEGISKLPGCSVMEVNGEVHEFFSGDKSHP 502

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
             D I  +  E+   +K  GYV  T+SVL D+E++EKE  L  HSE++A+A+GL     G
Sbjct: 503 SYDVIETMWGEISKRLKLAGYVASTNSVLFDIEEEEKEDALCKHSEKMAIAFGLFSLKEG 562

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             +R+VKNLR+C DCH V KMIS+I +REI+VRD  R+HHFKDG+CSC DFW
Sbjct: 563 LPIRIVKNLRICWDCHDVSKMISKIFEREIIVRDRNRFHHFKDGECSCKDFW 614


>gi|356521885|ref|XP_003529581.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Glycine max]
          Length = 603

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 224/611 (36%), Positives = 339/611 (55%), Gaps = 39/611 (6%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           +H++ +L+ C   +   +  + H+ ++K GL       N LI+ Y +   + +A  L +E
Sbjct: 28  AHFVAKLQTC---KDLTSATSTHSNVVKSGLSNDTFATNHLINCYLRLFTIDHAQKLFDE 84

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           MP R+ VSW S++  Y     P   + +F  M     L P+ F FA+L+ AC  L    +
Sbjct: 85  MPHRNVVSWTSLMAGYVSQGQPNMALCLFHQMQGTLVL-PNEFTFATLINACSILANLEI 143

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G+++HA   +S    + V  SSL+DMY KC   + AR                       
Sbjct: 144 GRRIHALVEVSGLGSNLVACSSLIDMYGKCNHVDEARL---------------------- 181

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
                    IF+    RN+  WT++++   Q+     A   F E     +D  +  +L S
Sbjct: 182 ---------IFDSMCTRNVVSWTSMITTYSQNAQGHHALQLFKEFNHSRLDKPNHFMLCS 232

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
            V ACA+   L  GK  HG+VI LG+E+   I++A+VDMYAKC  +  +  IF R++   
Sbjct: 233 AVSACASLGSLGSGKITHGVVIRLGHEASDVIASALVDMYAKCGCVNYSAKIFRRIQNPS 292

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           V+ +TS+IVG A++G    +L L+ EMV   +KPN++TFVG+++ACSH GLV KG +L  
Sbjct: 293 VIPYTSMIVGAAKYGLGILSLQLFQEMVVRRIKPNDITFVGVLHACSHSGLVDKGLELLD 352

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD--EPTWAALLSACKHHR 421
           SM   YG+TP  +HYTC+ D+L R G ++EA  L K++  E D     W  LLSA + + 
Sbjct: 353 SMDGKYGVTPDAKHYTCIADMLGRVGRIEEAYQLAKSVQVEGDGYAMLWGTLLSASRLYG 412

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
             ++    +N L+    +   +Y+ LSN YA A  W++   +R  M    V KEPG S+I
Sbjct: 413 RVDIALEASNRLIESNQQVAGAYVTLSNAYALAGDWENAHNLRSEMKHTGVYKEPGSSWI 472

Query: 482 EFGKGSHIFYAGETS-HPLKDEIFELLTELDAEMKRRGYVPDTSS-VLHDMEQKEKERQL 539
           E  + +++F+AG+ S +    EI  LL EL+  MK RGYV  T   V  D+E++ KE  +
Sbjct: 473 EIKESTYLFHAGDISKYTQGREILSLLRELEERMKGRGYVGGTKGLVFVDVEEEAKEEIV 532

Query: 540 FWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
             HSE+LA+A+GL+ +  G  +R++KNLR+C DCH   K+IS I +RE+VVRD  R+HHF
Sbjct: 533 SMHSEKLALAFGLINTPKGVTIRIMKNLRMCRDCHGAFKLISDIVERELVVRDVNRFHHF 592

Query: 600 KDGKCSCNDFW 610
           K+G C+C DFW
Sbjct: 593 KNGLCTCGDFW 603


>gi|195611854|gb|ACG27757.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 633

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 223/595 (37%), Positives = 347/595 (58%), Gaps = 13/595 (2%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA  ++  + Q   +   L  AY     +  A  LL   P    V + S + A++   L
Sbjct: 43  IHAAAVRASVDQDKAVAFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGL 102

Query: 85  PQKTISIFSTML-ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
            +  +++ S ML +   L P     ++ + ACG L    +G+ +H   V      +  V 
Sbjct: 103 HRAALALLSEMLLSRHGLLPTAHTLSASLPACGCLA---VGRALHGYAVKLALSGEPYVA 159

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           ++L+ MYA+ G    ARA+FD ++   + VS TAMLS YA+ G+  DA  +F+  P ++L
Sbjct: 160 TALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAKMGQLDDARGLFDALPRKDL 219

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W A++ G  Q     +A   F +M R GV+  D + +   + A A     E G+ +H 
Sbjct: 220 VCWNAMMDGYTQHGRPSEALRLFRQMLRSGVE-PDEVSVVLALSAVAQLGTAESGRWLHS 278

Query: 263 LVIALGYESCLF----ISNAIVDMYAKCSDIIAAKDIF---GRMRRKDVVSWTSIIVGTA 315
            V   G  + +     +  A+VDMY KC  +  A  +F   G    +DVV+W ++I G A
Sbjct: 279 FVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRDLGGGGDRDVVAWNAMINGYA 338

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
            HG++ E L  + ++ + G+ P ++TF+G++ ACSH GLV +GR LF +M E+YGI P +
Sbjct: 339 MHGRSREALEAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRALFAAMEEEYGIVPKV 398

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
           +HY C++DLL R+G ++EA +L+++M  +PD   WA+LL AC+ H+N  +G RVA++L+ 
Sbjct: 399 EHYGCMVDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVG 458

Query: 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGET 495
               +  +Y+LLSN+YA+A  W+ V +VR +M    V+KEPG S +E G+    F AG+ 
Sbjct: 459 NGLANSGTYVLLSNMYAAAGKWREVGRVRSMMRASGVQKEPGCSAVEVGRRVVEFVAGDR 518

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKS 555
           SHP   EI+  L E+++  + RG+VP T  VLHD++   KER L  HSE+LA+A+GL+ +
Sbjct: 519 SHPRSAEIYAKLEEVNSIARARGHVPHTELVLHDLDDAAKERALAVHSEKLALAFGLIST 578

Query: 556 VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            P T +++VKNLR C DCH V+K++S  T R+IV RD  R+HHF DG CSC D+W
Sbjct: 579 PPRTGIKIVKNLRACADCHAVLKLVSEATGRKIVFRDRNRFHHFVDGSCSCGDYW 633



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 92/401 (22%), Positives = 161/401 (40%), Gaps = 98/401 (24%)

Query: 23  KTLHAQIIKLGLHQY-------------------------GPLPN-------TLIDAYGK 50
           + LH   +KL L                            G  P+        ++  Y K
Sbjct: 141 RALHGYAVKLALSGEPYVATALLGMYARAGEAAAARALFDGMRPDPHVVSVTAMLSCYAK 200

Query: 51  CDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFAS 110
              +  A  L + +P++D V W +++  Y Q   P + + +F  ML    ++PD      
Sbjct: 201 MGQLDDARGLFDALPRKDLVCWNAMMDGYTQHGRPSEALRLFRQML-RSGVEPDEVSVVL 259

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDV-----VKSSLVDMYAKCGLPNNARAVFDS 165
            + A   LG    G+ +H+ FV +      V     V ++LVDMY KCG    A AVF  
Sbjct: 260 ALSAVAQLGTAESGRWLHS-FVANGGRRARVRLNARVGTALVDMYYKCGSLEEAVAVFRD 318

Query: 166 IKL---KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
           +     ++ V+W AM++ YA  GR ++A+E F Q  +R   LW   +             
Sbjct: 319 LGGGGDRDVVAWNAMINGYAMHGRSREALEAFGQ--LRAQGLWPTDI------------- 363

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI-------HGLVIALGYESCLFI 275
            +FI                 ++ AC++  +++ G+ +       +G+V  + +  C+  
Sbjct: 364 -TFI----------------GVLNACSHSGLVDEGRALFAAMEEEYGIVPKVEHYGCM-- 404

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRK-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
               VD+  +   +  A D+   M+ K D   W S++     H        + D +V  G
Sbjct: 405 ----VDLLGRAGRVEEAFDLVQSMKAKPDAAMWASLLGACRLHKNLALGQRVADYLVGNG 460

Query: 335 VKPNEVTFVGL--IYACSHVGLVGKGRKL--FKSMIEDYGI 371
           +  N  T+V L  +YA +     GK R++   +SM+   G+
Sbjct: 461 LA-NSGTYVLLSNMYAAA-----GKWREVGRVRSMMRASGV 495


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 206/571 (36%), Positives = 330/571 (57%), Gaps = 37/571 (6%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+L+D Y KCD +     L +EMP+RD+VS+  I+ AY         + +F  M    KL
Sbjct: 275 NSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREM---QKL 331

Query: 102 QPDHFV--FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
             D  V  +A+++   GSL    +GKQ+HA  VL     +D++ ++L+DMY+KCG+ + A
Sbjct: 332 GFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAA 391

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           ++ F +   K+++S                               WTAL++G VQ+    
Sbjct: 392 KSNFSNRSEKSAIS-------------------------------WTALITGYVQNGQHE 420

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           +A   F +MRR G+   D    SSI+ A ++ A++ LG+Q+H  +I  GY+S +F  + +
Sbjct: 421 EALQLFSDMRRAGLR-PDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVL 479

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           VDMYAKC  +  A   F  M  ++ +SW ++I   A +G+A+  + +++ M+  G  P+ 
Sbjct: 480 VDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDS 539

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           VTF+ ++ ACSH GL  +  K F  M   Y I+P  +HY C++D L R G   + + ++ 
Sbjct: 540 VTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLV 599

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
            MPF+ D   W ++L +C+ H N E+    A+ L  ++P D + Y++LSN+YA A  W+ 
Sbjct: 600 EMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWED 659

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
            + V+K+M    V+KE GYS++E  +  + F + + + P+ DEI + L  L  EM ++GY
Sbjct: 660 AACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGY 719

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
            PD +  LH ++ + K   L +HSERLA+A+ L+ +  GT +R++KNL  C DCH V+KM
Sbjct: 720 KPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKM 779

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           IS+I  R+I+VRD+ R+HHFKDG CSC D+W
Sbjct: 780 ISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 810



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 125/428 (29%), Positives = 215/428 (50%), Gaps = 36/428 (8%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           TV +LH   IK GL  +  + NTL+DAY K  L+  A  +  EM  +D V++ +++   +
Sbjct: 153 TVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCS 212

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           +  L  + + +F+ M     +   HF F+S++     +    LG QVHA  + S    + 
Sbjct: 213 KEGLHTQALQLFAAMRRAG-IPATHFTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNV 271

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V +SL+D Y+KC   ++ R +FD +  +++VS+  +++AYA                  
Sbjct: 272 FVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYA------------------ 313

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
               W    + +++          F EM++ G D    L  ++++    +   + +GKQI
Sbjct: 314 ----WNQCAATVLRL---------FREMQKLGFD-RQVLPYATMLSVAGSLPDVHIGKQI 359

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H  ++ LG  S   + NA++DMY+KC  + AAK  F     K  +SWT++I G  Q+GQ 
Sbjct: 360 HAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQH 419

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           EE L L+ +M  AG++P+  TF  +I A S + ++G GR+L   +I   G   S+   + 
Sbjct: 420 EEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRS-GYKSSVFSGSV 478

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           L+D+ ++ G LDEA      MP E +  +W A++SA  H+   +   ++   +L     +
Sbjct: 479 LVDMYAKCGCLDEALRTFDEMP-ERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCG-FN 536

Query: 441 PSSYILLS 448
           P S   LS
Sbjct: 537 PDSVTFLS 544



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 98/419 (23%), Positives = 168/419 (40%), Gaps = 68/419 (16%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S +LHR R       A+  +  H  I  L         N ++ AY     +  A HL   
Sbjct: 56  SGHLHRAR-------AMFDQMPHKNIFSL---------NLILSAYSSSGDLPAAQHLFLS 99

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSL----- 118
            P R+  +W  ++ A+  A      +S+F  ML  + + PD     +++   G       
Sbjct: 100 SPHRNATTWTIMMRAHAAAGRTSDALSLFRAMLG-EGVIPDRVTVTTVLNLPGCTVPSLH 158

Query: 119 -GATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAM 177
             A + G   H             V ++L+D Y K GL   AR VF  +  K++V++ AM
Sbjct: 159 PFAIKFGLDTHV-----------FVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAM 207

Query: 178 LSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD 237
           +   ++ G    A+++F                                 MRR G+    
Sbjct: 208 MMGCSKEGLHTQALQLFAA-------------------------------MRRAGIPATH 236

Query: 238 PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297
               SSI+   A  A L LG Q+H LV+       +F++N+++D Y+KC  +   + +F 
Sbjct: 237 -FTFSSILTVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFD 295

Query: 298 RMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357
            M  +D VS+  II   A +  A   L L+ EM   G     + +  ++     +  V  
Sbjct: 296 EMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHI 355

Query: 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           G+++   ++   G+         L+D+ S+ G LD A++       E    +W AL++ 
Sbjct: 356 GKQIHAQLVL-LGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRS-EKSAISWTALITG 412



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 37/204 (18%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH+ +I+ G        + L+D Y KC  +  A    +EMP+R+ +SW ++++AY   
Sbjct: 458 RQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHY 517

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACG-------------------------- 116
              +  I +F  ML      PD   F S++ AC                           
Sbjct: 518 GEAKNAIKMFEGMLHC-GFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKE 576

Query: 117 -------SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI--- 166
                  +LG      QV    V  PF  D ++ +S++      G    AR   D +   
Sbjct: 577 HYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGM 636

Query: 167 KLKNSVSWTAMLSAYARSGRKKDA 190
           +  ++  +  + + YAR+G+ +DA
Sbjct: 637 EPTDATPYVILSNIYARAGQWEDA 660


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/609 (35%), Positives = 342/609 (56%), Gaps = 58/609 (9%)

Query: 55  QYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA 114
           + A  L +++  RD +SW S+++ Y    L ++ + I+  M+ L  +  D     S++  
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG-IDVDLATIISVLVG 260

Query: 115 CGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSW 174
           C + G   LGK VH+  + S F       ++L+DMY+KCG  + A  VF+ +  +N VSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 175 TAMLSAYARSGRKKDAMEIFEQ------------------APVR---------------- 200
           T+M++ Y R GR   A+++ +Q                  A  R                
Sbjct: 321 TSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380

Query: 201 -----NLFLWTALVSGLVQ--SRNEIDAFYSFIEMRREGVDIV-----------DPLVLS 242
                NLF+  AL+    +  S    ++ +S + ++    DI+           D   ++
Sbjct: 381 NNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVK----DIISWNTMIGELKPDSRTMA 436

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            ++ ACA+ + LE GK+IHG ++  GY S   ++NA+VD+Y KC  +  A+ +F  +  K
Sbjct: 437 CVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK 496

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           D+VSWT +I G   HG   E +A ++EM  AG++P+EV+F+ ++YACSH GL+ +G + F
Sbjct: 497 DLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF 556

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
             M  D+ I P L+HY C++DLLSR+G+L +A   I+ +P  PD   W ALL  C+++ +
Sbjct: 557 YIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHD 616

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
            E+  +VA  +  L+PE+   Y+LL+N+YA A  W+ V ++R+ +    ++K PG S+IE
Sbjct: 617 IELAEKVAERVFELEPENSGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIE 676

Query: 483 FGKGSHIFYAG-ETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
                ++F +G  +SHP    I  LL ++  +MK  G+ P T   L + ++ +KE  L  
Sbjct: 677 IKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCG 736

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSE+LA+A+GLL   P   +RV KNLRVCGDCH + K +S+ T+REIV+RD  R+HHFKD
Sbjct: 737 HSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDPNRFHHFKD 796

Query: 602 GKCSCNDFW 610
           G CSC  FW
Sbjct: 797 GYCSCRGFW 805



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 174/361 (48%), Gaps = 35/361 (9%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
            ++S+++ C  L +   GK+VH+    +    D+ +   LV  YA CG     R VFD++
Sbjct: 101 TYSSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 167 KLKNSVSWTAMLSAYARSG--------------------RKKDAMEIFEQAPVRNLFLWT 206
           + KN   W  M+S YA+ G                    R + A E+F++   R++  W 
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWN 220

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
           +++SG V +         + +M   G+D+    ++S +VG CAN   L LGK +H L I 
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVG-CANSGTLSLGKAVHSLAIK 279

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
             +E  +  SN ++DMY+KC D+  A  +F +M  ++VVSWTS+I G  + G+++  + L
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKL 339

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
             +M   GVK + V    +++AC+  G +  G+ +    I+   +  +L     L+D+ +
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV-HDYIKANNMESNLFVCNALMDMYA 398

Query: 387 RSGHLDEAENLIKAM-------------PFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
           + G ++ A ++   M               +PD  T A +L AC      E G  +  ++
Sbjct: 399 KCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYI 458

Query: 434 L 434
           L
Sbjct: 459 L 459



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 123/294 (41%), Gaps = 51/294 (17%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA        K +H+  IK    +     NTL+D Y KC  +  A  + E+M +R+ VSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            S++  Y +       I +   M   + ++ D     S++ AC   G+   GK VH    
Sbjct: 321 TSMIAGYTRDGRSDGAIKLLQQM-EKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 379

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAM--------------- 177
            +    +  V ++L+DMYAKCG    A +VF ++ +K+ +SW  M               
Sbjct: 380 ANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVL 439

Query: 178 -----LSAYA----------RSGRKKD-------------------AMEIFEQAPVRNLF 203
                LSA            R+G   D                   A  +F+  P ++L 
Sbjct: 440 PACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLV 499

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
            WT +++G        +A  +F EMR  G++  D +   SI+ AC++  +LE G
Sbjct: 500 SWTVMIAGYGMHGYGNEAIATFNEMRDAGIE-PDEVSFISILYACSHSGLLEQG 552



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 1/115 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K +H  I++ G      + N L+D Y KC ++  A  L + +P +D 
Sbjct: 439 LPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           VSW  ++  Y       + I+ F+ M     ++PD   F S++ AC   G    G
Sbjct: 499 VSWTVMIAGYGMHGYGNEAIATFNEMRDAG-IEPDEVSFISILYACSHSGLLEQG 552


>gi|108711755|gb|ABF99550.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215697380|dbj|BAG91374.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 646

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/569 (37%), Positives = 319/569 (56%), Gaps = 33/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L   Y K   +  A  L +EMP+R+  +W +++         ++++  F  M   + +
Sbjct: 111 NILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRR-EGM 169

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            PD F   S+ + C  L     G+QVHA  V S    D  V SSL  MY +CG      A
Sbjct: 170 HPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEA 229

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           V   +   + VS   +++   ++G  + A+E F                           
Sbjct: 230 VLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYF--------------------------- 262

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
                 MR  GV   D +   S + +C++ A L  G+QIHG V+  G +  + +   +V 
Sbjct: 263 ----CMMRSVGV-AADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVH 317

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY++C  +  ++ +F      D    +++I     HG  ++ + L+ +M++ G +P++VT
Sbjct: 318 MYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVT 377

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+ L+YACSH GL  +G   F+ M + YG+ PS++HYTC++DLL RSG LDEAE LI +M
Sbjct: 378 FLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSM 437

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P  PD   W  LLSACK  +N +M  R+A  ++ L P D +SY+LLSN+ A++  W  VS
Sbjct: 438 PLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVS 497

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           +VRK M    V+KEPG S++E     H F  G+ SHP + EI E L E+ A++++ GY P
Sbjct: 498 EVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSP 557

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           D S VLHDME +EKE  L  HSE+LA+A+  L    G  +RV+KNLRVC DCH+ +K++S
Sbjct: 558 DMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMS 617

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++T REIVVRD +R+HHFKDG+CSC D+W
Sbjct: 618 QVTGREIVVRDVSRFHHFKDGRCSCRDYW 646



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 173/348 (49%), Gaps = 7/348 (2%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
           +F+ L +AC +L   R  +Q+HA    S    D    + L+  YA  G    AR +F+ I
Sbjct: 46  LFSHLFRACRAL---RPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERI 102

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
             +N +SW  +   Y ++G    A ++F++ P RN+  W A+V+GL     + ++   F+
Sbjct: 103 PRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFL 162

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           +MRREG+   D   L S+   CA    +  G+Q+H  V+  G +  + + +++  MY +C
Sbjct: 163 DMRREGMH-PDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRC 221

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             +   + +   +    +VS  +II G  Q+G +E  L  +  M S GV  + VTFV  I
Sbjct: 222 GCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAI 281

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            +CS +  + +G+++   +++  G+   +   TCL+ + SR G L ++E +        D
Sbjct: 282 SSCSDLAALAQGQQIHGQVMK-AGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGY-CGSD 339

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454
               +A++SA   H + +    +   +++   E PS    L+ +YA +
Sbjct: 340 TFLLSAMISAYGFHGHGQKAIELFKQMMNGGAE-PSDVTFLALLYACS 386



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 3/188 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            R CA  +  +T + +HA +++ GL +   + ++L   Y +C  +Q    +L  +P    
Sbjct: 180 FRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSI 239

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS  +I+    Q    +  +  F  M ++  +  D   F S + +C  L A   G+Q+H 
Sbjct: 240 VSCNTIIAGRTQNGDSEGALEYFCMMRSV-GVAADVVTFVSAISSCSDLAALAQGQQIHG 298

Query: 130 CFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
             V+    D  V V + LV MY++CG   ++  VF      ++   +AM+SAY   G  +
Sbjct: 299 -QVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQ 357

Query: 189 DAMEIFEQ 196
            A+E+F+Q
Sbjct: 358 KAIELFKQ 365


>gi|414590987|tpg|DAA41558.1| TPA: hypothetical protein ZEAMMB73_311644 [Zea mays]
          Length = 575

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 201/507 (39%), Positives = 313/507 (61%), Gaps = 5/507 (0%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D FV  +LV+A    G   L +   A F  +P   D  + + ++  Y   G    AR VF
Sbjct: 74  DLFVRTALVEAYAKAGRADLAR---AAFDEAPR-RDVFLCNVMLAAYVTRGEVAEARRVF 129

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           D ++ ++ VSW  M+  YA +G    A E+F     R+ F W++++S   + R   DA  
Sbjct: 130 DGMRERDMVSWNTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALE 189

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            + EMR   V+  D   + S++ AC++   L +G ++H  V + G E  + +  A++DMY
Sbjct: 190 LWREMRAACVN-PDCTTMVSVLSACSDMGALAVGAEVHQFVESNGVELDVKLGTALIDMY 248

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           AKC DI  +  +F  M  KDV++W+S+I+G A HG   + L+L+  M+S G++PNEVTF+
Sbjct: 249 AKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLSEGLQPNEVTFI 308

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
           G++ +C+H+GLV  G+K F SM   +G+TP +QHY C++DLL RSGH++EA+ LI+ MPF
Sbjct: 309 GVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEEAKQLIRDMPF 368

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
           EPD   W ALL AC+ ++N E+       L  L P     Y+LLSN+YA A  W+ V+++
Sbjct: 369 EPDAVIWRALLGACRIYKNVEVAEEAMAKLRVLDPHADGHYVLLSNIYAQANSWEGVAEM 428

Query: 464 RKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDT 523
           R+ +    +++ PG S IE+    H F +G+ SHP   EI+++L E+   +++ GY P T
Sbjct: 429 RRTLRRERIQRIPGRSSIEWQNTIHEFISGDRSHPRSKEIYKMLGEMMDRLRQAGYKPMT 488

Query: 524 SSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRI 583
             VL D++++ KER L  HSE+LAVA+GLL +  G+ LR+ KNLR C DCH  +K+I+ +
Sbjct: 489 GLVLQDIDEQSKERALAEHSEKLAVAFGLLTTPAGSTLRITKNLRACEDCHSAIKLIALL 548

Query: 584 TKREIVVRDATRYHHFKDGKCSCNDFW 610
            +R++++RD  R+HHF +G+CSC D+W
Sbjct: 549 YERKLIIRDRNRFHHFSEGRCSCKDYW 575



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 85/156 (54%), Gaps = 3/156 (1%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT+I  Y     V  A  +   M  RD  SW+S+++AY +    +  + ++  M A   +
Sbjct: 141 NTMIHGYAVNGEVDLAREVFNGMDDRDAFSWSSMMSAYTKGRRSKDALELWREMRAA-CV 199

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNAR 160
            PD     S++ AC  +GA  +G +VH  FV S   + DV + ++L+DMYAKCG   N+ 
Sbjct: 200 NPDCTTMVSVLSACSDMGALAVGAEVHQ-FVESNGVELDVKLGTALIDMYAKCGDIENSV 258

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
            VF S+ +K+ ++W++M+   A  G   DA+ +F +
Sbjct: 259 RVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSR 294



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 67/143 (46%), Gaps = 3/143 (2%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   LID Y KC  ++ +  +   MP +D ++W+S++            +S+FS ML+ +
Sbjct: 240 LGTALIDMYAKCGDIENSVRVFHSMPVKDVLTWSSMIIGLANHGFGHDALSLFSRMLS-E 298

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNN 158
            LQP+   F  ++ +C  LG    GK+  +   +       V     +VD+  + G    
Sbjct: 299 GLQPNEVTFIGVLISCTHLGLVSDGKKYFSSMSVVHGVTPKVQHYGCMVDLLGRSGHIEE 358

Query: 159 ARAVFDSIKLK-NSVSWTAMLSA 180
           A+ +   +  + ++V W A+L A
Sbjct: 359 AKQLIRDMPFEPDAVIWRALLGA 381


>gi|449450646|ref|XP_004143073.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/588 (35%), Positives = 337/588 (57%), Gaps = 36/588 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA++ K  L++ G + + L+  Y K    + A  L ++MP +D VSW S+++ +++ 
Sbjct: 59  REIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRC 118

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                +++ F TM     ++P+     S++ AC   GA   GK +H   +      +  V
Sbjct: 119 --LHMSLTAFYTMKFEMSVKPNEVTILSMISACS--GALDAGKYIHGFGIKVGGTLEVKV 174

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SL++MY K                               SG    A  +FE  P  N 
Sbjct: 175 ANSLINMYGK-------------------------------SGDLTSACRLFEAIPDPNT 203

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W ++++  V +    +    F +MRR G++  +  +L+ ++ AC +  V +L + IHG
Sbjct: 204 VSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILA-LLQACLHLGVGKLAESIHG 262

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L+   G+ + + I+ A++D YAK   + A+  +F  +   D V+WT+++ G A HG   E
Sbjct: 263 LMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGRE 322

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L++ M + G++P+ VTF  L+ ACSH GLV +G+  F  M E YGI P + HY+C++
Sbjct: 323 AIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMV 382

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R G L++A  +I+ MP EP+   W ALL AC+ H N E+G  VA HL++++P DP 
Sbjct: 383 DLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPR 442

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +YI+LSN+Y+++  W+  +KVR L+    +K+ PGYS IE+G  +H F+ G+ SHP  ++
Sbjct: 443 NYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEK 502

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L EL  ++++ GY   T  VL D+E++ KE  +  HSE+LA+A+GLL S  G  L 
Sbjct: 503 IYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALI 562

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + KNLR+CGDCH   K+IS I KR I++RD  R+HHF DG CSC D+W
Sbjct: 563 ITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 149/300 (49%), Gaps = 13/300 (4%)

Query: 127 VHACFVLSPFC-DDDVVKSSLVDMYAKCGLPNNARA----VFDSIKLKNSVSWTAMLSAY 181
           +H  F L   C   + + S+L+     C   +N R     VF S+  ++      +++ Y
Sbjct: 25  LHRSFHLVRQCATPEAIVSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCY 84

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN-EIDAFYSFIEMRREGVDIVDPLV 240
            + G  +DA+++F+  P ++L  W +L+SG  +  +  + AFY+   M+ E     + + 
Sbjct: 85  NKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHMSLTAFYT---MKFEMSVKPNEVT 141

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           + S++ AC+    L+ GK IHG  I +G    + ++N++++MY K  D+ +A  +F  + 
Sbjct: 142 ILSMISACS--GALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIP 199

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
             + VSW SII     +G A E +  +++M   G++ +E T + L+ AC H+G VGK  +
Sbjct: 200 DPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLG-VGKLAE 258

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
               ++   G    +   T LLD  ++ G L  +  +   + F  D   W A+L+    H
Sbjct: 259 SIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGF-ADRVAWTAMLAGYAAH 317



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 9/192 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C    +    +++H  +   G      +   L+D Y K   +  ++ +  E+   D 
Sbjct: 245 LQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADR 304

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ--- 126
           V+W ++L  Y    L ++ I +F +M A   L+PDH  F  L+ AC   G    GK    
Sbjct: 305 VAWTAMLAGYAAHGLGREAIKLFESM-ANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFN 363

Query: 127 -VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARS 184
            +   + + P  D     S +VD+  +CGL N+A  V  ++ ++ N+  W A+L A    
Sbjct: 364 VMSEVYGIEPRVDH---YSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVH 420

Query: 185 GRKKDAMEIFEQ 196
           G  +   E+ E 
Sbjct: 421 GNIELGKEVAEH 432


>gi|115456187|ref|NP_001051694.1| Os03g0816600 [Oryza sativa Japonica Group]
 gi|113550165|dbj|BAF13608.1| Os03g0816600, partial [Oryza sativa Japonica Group]
          Length = 708

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/569 (37%), Positives = 319/569 (56%), Gaps = 33/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L   Y K   +  A  L +EMP+R+  +W +++         ++++  F  M   + +
Sbjct: 173 NILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFLDMRR-EGM 231

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            PD F   S+ + C  L     G+QVHA  V S    D  V SSL  MY +CG      A
Sbjct: 232 HPDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEA 291

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           V   +   + VS   +++   ++G  + A+E F                           
Sbjct: 292 VLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYF--------------------------- 324

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
                 MR  GV   D +   S + +C++ A L  G+QIHG V+  G +  + +   +V 
Sbjct: 325 ----CMMRSVGV-AADVVTFVSAISSCSDLAALAQGQQIHGQVMKAGVDKVVPVMTCLVH 379

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY++C  +  ++ +F      D    +++I     HG  ++ + L+ +M++ G +P++VT
Sbjct: 380 MYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQKAIELFKQMMNGGAEPSDVT 439

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+ L+YACSH GL  +G   F+ M + YG+ PS++HYTC++DLL RSG LDEAE LI +M
Sbjct: 440 FLALLYACSHSGLKEEGMDCFELMTKTYGMQPSVKHYTCVVDLLGRSGCLDEAEALILSM 499

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P  PD   W  LLSACK  +N +M  R+A  ++ L P D +SY+LLSN+ A++  W  VS
Sbjct: 500 PLTPDGVIWKTLLSACKTQKNFDMAERIAKRVIELDPHDSASYVLLSNIRATSRRWGDVS 559

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           +VRK M    V+KEPG S++E     H F  G+ SHP + EI E L E+ A++++ GY P
Sbjct: 560 EVRKAMRDNNVRKEPGVSWVELKGHIHQFCTGDESHPRQKEIDECLEEMMAKIRQCGYSP 619

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           D S VLHDME +EKE  L  HSE+LA+A+  L    G  +RV+KNLRVC DCH+ +K++S
Sbjct: 620 DMSMVLHDMEDEEKEVSLSHHSEKLAIAFAFLSLPEGVPIRVMKNLRVCDDCHLAIKLMS 679

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++T REIVVRD +R+HHFKDG+CSC D+W
Sbjct: 680 QVTGREIVVRDVSRFHHFKDGRCSCRDYW 708



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 172/346 (49%), Gaps = 7/346 (2%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
           +F+ L +AC +L   R  +Q+HA    S    D    + L+  YA  G    AR +F+ I
Sbjct: 108 LFSHLFRACRAL---RPLRQLHAFAATSGAATDRFTANHLMLAYADLGDLTAARELFERI 164

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
             +N +SW  +   Y ++G    A ++F++ P RN+  W A+V+GL     + ++   F+
Sbjct: 165 PRRNVMSWNILFGGYIKNGDLGGARKLFDEMPERNVATWNAMVAGLTNLGFDEESLGFFL 224

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           +MRREG+   D   L S+   CA    +  G+Q+H  V+  G +  + + +++  MY +C
Sbjct: 225 DMRREGMH-PDEFGLGSVFRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRC 283

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             +   + +   +    +VS  +II G  Q+G +E  L  +  M S GV  + VTFV  I
Sbjct: 284 GCLQEGEAVLRMLPSLSIVSCNTIIAGRTQNGDSEGALEYFCMMRSVGVAADVVTFVSAI 343

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            +CS +  + +G+++   +++  G+   +   TCL+ + SR G L ++E +        D
Sbjct: 344 SSCSDLAALAQGQQIHGQVMK-AGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGY-CGSD 401

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
               +A++SA   H + +    +   +++   E PS    L+ +YA
Sbjct: 402 TFLLSAMISAYGFHGHGQKAIELFKQMMNGGAE-PSDVTFLALLYA 446



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 91/188 (48%), Gaps = 3/188 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            R CA  +  +T + +HA +++ GL +   + ++L   Y +C  +Q    +L  +P    
Sbjct: 242 FRCCAGLRDVVTGRQVHAYVVRSGLDRDMCVGSSLAHMYMRCGCLQEGEAVLRMLPSLSI 301

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS  +I+    Q    +  +  F  M ++  +  D   F S + +C  L A   G+Q+H 
Sbjct: 302 VSCNTIIAGRTQNGDSEGALEYFCMMRSV-GVAADVVTFVSAISSCSDLAALAQGQQIHG 360

Query: 130 CFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
             V+    D  V V + LV MY++CG   ++  VF      ++   +AM+SAY   G  +
Sbjct: 361 -QVMKAGVDKVVPVMTCLVHMYSRCGCLGDSERVFFGYCGSDTFLLSAMISAYGFHGHGQ 419

Query: 189 DAMEIFEQ 196
            A+E+F+Q
Sbjct: 420 KAIELFKQ 427


>gi|449500413|ref|XP_004161091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Cucumis sativus]
          Length = 610

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 210/588 (35%), Positives = 337/588 (57%), Gaps = 36/588 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA++ K  L++ G + + L+  Y K    + A  L ++MP +D VSW S+++ +++ 
Sbjct: 59  REIHARVFKSLLYRDGFIGDQLVTCYNKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRC 118

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                +++ F TM     ++P+     S++ AC   GA   GK +H   +      +  V
Sbjct: 119 --LHMSLTAFYTMKFEMSVKPNEVTILSMISACN--GALDAGKYIHGFGIKVGGTLEVKV 174

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SL++MY K                               SG    A  +FE  P  N 
Sbjct: 175 ANSLINMYGK-------------------------------SGDLTSACRLFEAIPDPNT 203

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W ++++  V +    +    F +MRR G++  +  +L+ ++ AC +  V +L + IHG
Sbjct: 204 VSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILA-LLQACLHLGVGKLAESIHG 262

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L+   G+ + + I+ A++D YAK   + A+  +F  +   D V+WT+++ G A HG   E
Sbjct: 263 LMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADRVAWTAMLAGYAAHGLGRE 322

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L++ M + G++P+ VTF  L+ ACSH GLV +G+  F  M E YGI P + HY+C++
Sbjct: 323 AIKLFESMANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFNVMSEVYGIEPRVDHYSCMV 382

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R G L++A  +I+ MP EP+   W ALL AC+ H N E+G  VA HL++++P DP 
Sbjct: 383 DLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVHGNIELGKEVAEHLINMEPLDPR 442

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +YI+LSN+Y+++  W+  +KVR L+    +K+ PGYS IE+G  +H F+ G+ SHP  ++
Sbjct: 443 NYIMLSNMYSASRSWKDAAKVRALLKERGLKRTPGYSSIEYGNKNHHFFVGDRSHPETEK 502

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L EL  ++++ GY   T  VL D+E++ KE  +  HSE+LA+A+GLL S  G  L 
Sbjct: 503 IYSKLEELLGKIRKAGYSSKTEYVLQDVEEEVKEDMINKHSEKLAIAFGLLVSKEGEALI 562

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + KNLR+CGDCH   K+IS I KR I++RD  R+HHF DG CSC D+W
Sbjct: 563 ITKNLRICGDCHSTAKLISLIEKRTIIIRDPKRFHHFSDGFCSCADYW 610



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 148/300 (49%), Gaps = 13/300 (4%)

Query: 127 VHACFVLSPFC-DDDVVKSSLVDMYAKCGLPNNARA----VFDSIKLKNSVSWTAMLSAY 181
           +H  F L   C   + + S+L+     C   +N R     VF S+  ++      +++ Y
Sbjct: 25  LHRSFHLVRQCATPEAIVSALLIAVNSCPSISNCREIHARVFKSLLYRDGFIGDQLVTCY 84

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN-EIDAFYSFIEMRREGVDIVDPLV 240
            + G  +DA+++F+  P ++L  W +L+SG  +  +  + AFY+   M+ E     + + 
Sbjct: 85  NKLGYAEDALKLFDDMPHKDLVSWNSLISGFSRCLHMSLTAFYT---MKFEMSVKPNEVT 141

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           + S++ AC     L+ GK IHG  I +G    + ++N++++MY K  D+ +A  +F  + 
Sbjct: 142 ILSMISACN--GALDAGKYIHGFGIKVGGTLEVKVANSLINMYGKSGDLTSACRLFEAIP 199

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
             + VSW SII     +G A E +  +++M   G++ +E T + L+ AC H+G VGK  +
Sbjct: 200 DPNTVSWNSIIAAQVTNGCAREGIDYFNKMRRLGIEQDEGTILALLQACLHLG-VGKLAE 258

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
               ++   G    +   T LLD  ++ G L  +  +   + F  D   W A+L+    H
Sbjct: 259 SIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGF-ADRVAWTAMLAGYAAH 317



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 9/192 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C    +    +++H  +   G      +   L+D Y K   +  ++ +  E+   D 
Sbjct: 245 LQACLHLGVGKLAESIHGLMFCTGFGAKITIATALLDTYAKLGRLSASYGVFTEVGFADR 304

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ--- 126
           V+W ++L  Y    L ++ I +F +M A   L+PDH  F  L+ AC   G    GK    
Sbjct: 305 VAWTAMLAGYAAHGLGREAIKLFESM-ANKGLEPDHVTFTHLLSACSHSGLVNEGKSYFN 363

Query: 127 -VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARS 184
            +   + + P  D     S +VD+  +CGL N+A  V  ++ ++ N+  W A+L A    
Sbjct: 364 VMSEVYGIEPRVDH---YSCMVDLLGRCGLLNDAYEVIQNMPMEPNAGVWGALLGACRVH 420

Query: 185 GRKKDAMEIFEQ 196
           G  +   E+ E 
Sbjct: 421 GNIELGKEVAEH 432


>gi|147801369|emb|CAN74731.1| hypothetical protein VITISV_037837 [Vitis vinifera]
          Length = 719

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/595 (38%), Positives = 323/595 (54%), Gaps = 38/595 (6%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ-RDHVSWASILTAYN 80
           +  LH+  +  G   Y  + N L+  YGK   +  A  +   M   RD VSW S++ AY 
Sbjct: 157 IGQLHSVAVSSGFDSYVSVNNALLTYYGKNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYG 216

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           Q     K + +F  M+    L  D F  AS++ A   L     G Q H   + + F  + 
Sbjct: 217 QHQEGSKALGLFQEMVR-RGLNVDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFHQNS 275

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V S L+D+Y+KCG                              G   D  ++FE+    
Sbjct: 276 HVGSGLIDLYSKCG------------------------------GGMSDCRKVFEEITEP 305

Query: 201 NLFLWTALVSGLVQSRNEI-DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
           +L LW  +VSG  Q+   + DA   F +M+  G    D      ++ AC+N +    GKQ
Sbjct: 306 DLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPND-CSFVCVISACSNLSSPSQGKQ 364

Query: 260 IHGLVIALGYESC-LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           IH L +     S  + + NA++ MY+KC ++  A+ +F RM   + VS  S+I G AQHG
Sbjct: 365 IHSLALKSDIPSNRISVDNALIAMYSKCGNLQDARRLFDRMAEHNTVSLNSMIAGYAQHG 424

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
              E+L L+  M+   + P  +TF+ ++ AC+H G V +G   F  M E + I P  +HY
Sbjct: 425 IEMESLHLFQWMLERQIAPTSITFISVLSACAHTGRVEEGWNYFNMMKEKFNIEPEAEHY 484

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
           +C++DLL R+G L EAENLI  MPF P    WA+LL AC+ H N E+  + AN +L L+P
Sbjct: 485 SCMIDLLGRAGKLSEAENLIARMPFNPGSIGWASLLGACRTHGNIELAVKAANQVLQLEP 544

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
            + + Y++LSN+YASA  W+ V+ VRK M    VKK+PG S+IE  K  H+F A ++SHP
Sbjct: 545 SNAAPYVVLSNMYASAGRWEEVATVRKFMRDRGVKKKPGCSWIEVKKRIHVFVAEDSSHP 604

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVL---HDMEQKEKERQLFWHSERLAVAYGLLKS 555
           +  EI+E L E+  +MKR GYVPD    L         EKE +L  HSE+LAVA+GL+ +
Sbjct: 605 MIKEIYEFLEEMSGKMKRAGYVPDVRWALVKDDGTRGGEKEIRLGHHSEKLAVAFGLIST 664

Query: 556 VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             G  + VVKNLR+CGDCH  +K IS I  REI VRDA R+H FK+G+CSC D+W
Sbjct: 665 KDGEPVLVVKNLRICGDCHNAIKFISAIAGREITVRDAHRFHCFKEGQCSCGDYW 719



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/383 (26%), Positives = 178/383 (46%), Gaps = 51/383 (13%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           F  L+K C +      GK +H+ ++ S         +  + +Y+KCG    AR  F  I 
Sbjct: 11  FRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQDIS 70

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
             N  S+ A+++AYA+  R   A ++F+Q P  +L  +  L+S          A   F  
Sbjct: 71  DPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGLFSG 130

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           MR  G+D+ D   LS+++ AC +   + L  Q+H + ++ G++S + ++NA++  Y K  
Sbjct: 131 MREMGLDM-DXFTLSAVITACCD--DVGLIGQLHSVAVSSGFDSYVSVNNALLTYYGKNG 187

Query: 288 DIIAAKDIF-GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
           D+  AK +F G    +D VSW S+IV   QH +  + L L+ EMV  G+  +  T   ++
Sbjct: 188 DLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQEMVRRGLNVDMFTLASVL 247

Query: 347 --YAC----------------------SHVG--------LVGKG----RKLFKSMIEDYG 370
             + C                      SHVG          G G    RK+F+ + E   
Sbjct: 248 TAFTCLEDLSGGLQFHGQLIKTGFHQNSHVGSGLIDLYSKCGGGMSDCRKVFEEITE--- 304

Query: 371 ITPSLQHYTCLLDLLSRSGH-LDEAENLIKAMP---FEPDEPTWAALLSACKHHRNTEMG 426
             P L  +  ++   S++   L++A    + M    + P++ ++  ++SAC +  +   G
Sbjct: 305 --PDLVLWNTMVSGYSQNEEFLEDALECFRQMQGIGYRPNDCSFVCVISACSNLSSPSQG 362

Query: 427 TRVANHLLSLKPEDPSSYILLSN 449
            ++  H L+LK + PS+ I + N
Sbjct: 363 KQI--HSLALKSDIPSNRISVDN 383



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 111/508 (21%), Positives = 208/508 (40%), Gaps = 106/508 (20%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQY------ 56
           +  + H L+ C   +   T K+LH+  IK  +       N  I  Y KC  + +      
Sbjct: 8   LQRFRHLLKTCIAERDLSTGKSLHSLYIKSFIPPSTYFSNHFILLYSKCGRLAWARKAFQ 67

Query: 57  -------------------------AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISI 91
                                    AH L +++P+ D VS+ ++++AY         + +
Sbjct: 68  DISDPNVFSFNAIIAAYAKESRPLIAHQLFDQIPEPDLVSYNTLISAYADCGETAPALGL 127

Query: 92  FSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYA 151
           FS M  +  L  D F  ++++ AC       L  Q+H+  V S F     V ++L+  Y 
Sbjct: 128 FSGMREMG-LDMDXFTLSAVITAC--CDDVGLIGQLHSVAVSSGFDSYVSVNNALLTYYG 184

Query: 152 KCGLPNNARAVFDSI-KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVS 210
           K G  ++A+ VF  +  +++ VSW +M+ AY +      A+ +F+               
Sbjct: 185 KNGDLDDAKRVFYGMGGIRDEVSWNSMIVAYGQHQEGSKALGLFQ--------------- 229

Query: 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE 270
                           EM R G++ VD   L+S++ A      L  G Q HG +I  G+ 
Sbjct: 230 ----------------EMVRRGLN-VDMFTLASVLTAFTCLEDLSGGLQFHGQLIKTGFH 272

Query: 271 SCLFISNAIVDMYAKCSDIIA-AKDIFGRMRRKDVVSWTSIIVGTAQHGQ-AEETLALYD 328
               + + ++D+Y+KC   ++  + +F  +   D+V W +++ G +Q+ +  E+ L  + 
Sbjct: 273 QNSHVGSGLIDLYSKCGGGMSDCRKVFEEITEPDLVLWNTMVSGYSQNEEFLEDALECFR 332

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
           +M   G +PN+ +FV +I ACS++    +G+++    ++    +  +     L+ + S+ 
Sbjct: 333 QMQGIGYRPNDCSFVCVISACSNLSSPSQGKQIHSLALKSDIPSNRISVDNALIAMYSKC 392

Query: 389 GHLDEAENLIKAMP----------------------------------FEPDEPTWAALL 414
           G+L +A  L   M                                     P   T+ ++L
Sbjct: 393 GNLQDARRLFDRMAEHNTVSLNSMIAGYAQHGIEMESLHLFQWMLERQIAPTSITFISVL 452

Query: 415 SACKHHRNTEMGTRVANHL---LSLKPE 439
           SAC H    E G    N +    +++PE
Sbjct: 453 SACAHTGRVEEGWNYFNMMKEKFNIEPE 480


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/609 (35%), Positives = 343/609 (56%), Gaps = 58/609 (9%)

Query: 55  QYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA 114
           + A  L +++  RD +SW S+++ Y    L ++ + I+  M+ L  +  D     S++  
Sbjct: 202 ESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG-IDVDLATIISVLVG 260

Query: 115 CGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSW 174
           C + G   LGK VH+  + S F       ++L+DMY+KCG  + A  VF+ +  +N VSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 175 TAMLSAYARSGRKKDAMEIFEQ------------------APVR---------------- 200
           T+M++ Y R GR   A+++ +Q                  A  R                
Sbjct: 321 TSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380

Query: 201 -----NLFLWTALVSGLVQ--SRNEIDAFYSFIEMRREGVDIV-----------DPLVLS 242
                NLF+  AL+    +  S    ++ +S + ++    DI+           D   ++
Sbjct: 381 NNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVK----DIISWNTMIGELKPDSRTMA 436

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            ++ ACA+ + LE GK+IHG ++  GY S   ++NA+VD+Y KC  +  A+ +F  +  K
Sbjct: 437 CVLPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK 496

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           D+VSWT +I G   HG   E +A ++EM  AG++P+EV+F+ ++YACSH GL+ +G + F
Sbjct: 497 DLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF 556

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
             M  D+ I P L+HY C++DLLSR+G+L +A   ++ +P  PD   W ALL  C+++ +
Sbjct: 557 YIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHD 616

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
            E+  +VA  +  L+PE+   Y+LL+N+YA A  W+ V ++R+ +    ++K PG S+IE
Sbjct: 617 IELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWIE 676

Query: 483 FGKGSHIFYAG-ETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
                ++F +G  +SHP    I  LL ++  +MK  G+ P T   L + ++ +KE  L  
Sbjct: 677 IKGKVNLFVSGNNSSHPHSKNIESLLKKMRRKMKEEGHFPKTKYALINADEMQKEMALCG 736

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSE+LA+A+GLL   P   +RV KNLRVCGDCH + K +S+ T+REIV+RD+ R+HHFKD
Sbjct: 737 HSEKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKD 796

Query: 602 GKCSCNDFW 610
           G CSC  FW
Sbjct: 797 GYCSCRGFW 805



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 172/361 (47%), Gaps = 35/361 (9%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
            + S+++ C  L +   GK+VH+    +    D  +   LV  YA CG     R VFD++
Sbjct: 101 TYGSVLQLCAGLKSFTDGKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 167 KLKNSVSWTAMLSAYARSG--------------------RKKDAMEIFEQAPVRNLFLWT 206
           + KN   W  M+S YA+ G                    R + A E+F++   R++  W 
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWN 220

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
           +++SG V +         + +M   G+D+    ++S +VG CAN   L LGK +H L I 
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVG-CANSGTLSLGKAVHSLAIK 279

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
             +E  +  SN ++DMY+KC D+  A  +F +M  ++VVSWTS+I G  + G+++  + L
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKL 339

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
             +M   GVK + V    +++AC+  G +  G+ +    I+   +  +L     L+D+ +
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV-HDYIKANNMESNLFVCNALMDMYA 398

Query: 387 RSGHLDEAENLIKAM-------------PFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
           + G ++ A ++   M               +PD  T A +L AC      E G  +  ++
Sbjct: 399 KCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIHGYI 458

Query: 434 L 434
           L
Sbjct: 459 L 459



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 123/294 (41%), Gaps = 51/294 (17%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA        K +H+  IK    +     NTL+D Y KC  +  A  + E+M +R+ VSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            S++  Y +       I +   M   + ++ D     S++ AC   G+   GK VH    
Sbjct: 321 TSMIAGYTRDGRSDGAIKLLQQM-EKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 379

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAM--------------- 177
            +    +  V ++L+DMYAKCG    A +VF ++ +K+ +SW  M               
Sbjct: 380 ANNMESNLFVCNALMDMYAKCGSMEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVL 439

Query: 178 -----LSAYA----------RSGRKKD-------------------AMEIFEQAPVRNLF 203
                LSA            R+G   D                   A  +F+  P ++L 
Sbjct: 440 PACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLV 499

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
            WT +++G        +A  +F EMR  G++  D +   SI+ AC++  +LE G
Sbjct: 500 SWTVMIAGYGMHGYGNEAIATFNEMRDAGIE-PDEVSFISILYACSHSGLLEQG 552



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 1/115 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K +H  I++ G      + N L+D Y KC ++  A  L + +P +D 
Sbjct: 439 LPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           VSW  ++  Y       + I+ F+ M     ++PD   F S++ AC   G    G
Sbjct: 499 VSWTVMIAGYGMHGYGNEAIATFNEMRDAG-IEPDEVSFISILYACSHSGLLEQG 552


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 216/594 (36%), Positives = 333/594 (56%), Gaps = 43/594 (7%)

Query: 25   LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
            +H   +K+G      + N+L+D Y KC  +  A  +   +  R  +SW +++  +  A  
Sbjct: 500  IHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGY 559

Query: 85   PQKTISIFSTMLALD-KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF-CDDD-V 141
              K +  F  M   + K +PD F   SL+KAC S G    GKQ+H   V S F C     
Sbjct: 560  GSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSAT 619

Query: 142  VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
            +  SLVD+Y KCG   +AR  FD IK K  +SW++++  YA+ G   +AM +F++     
Sbjct: 620  ITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKR----- 674

Query: 202  LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                      L +  ++ID+F                  LSSI+G  A+FA+L  GKQ+ 
Sbjct: 675  ----------LQELNSQIDSF-----------------ALSSIIGVFADFALLRQGKQMQ 707

Query: 262  GLVIAL--GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
             L + L  G E+ +   N++VDMY KC  +  A+  F  M+ KDV+SWT +I G  +HG 
Sbjct: 708  ALAVKLPSGLETSVL--NSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGL 765

Query: 320  AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
             ++++ ++ EM+   ++P+EV ++ ++ ACSH G++ +G +LF  ++E +GI P ++HY 
Sbjct: 766  GKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYA 825

Query: 380  CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
            C++DLL R+G L EA++LI  MP +P+   W  LLS C+ H + E+G  V   LL +  +
Sbjct: 826  CVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAK 885

Query: 440  DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
            +P++Y+++SN+Y  A  W      R+L ++  +KKE G S++E  +  H F +GE SHPL
Sbjct: 886  NPANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIEREVHFFRSGEDSHPL 945

Query: 500  KDEIFELLTELDAEMKRR-GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLK---S 555
               I E L E +  ++   GYV      LHD++ + KE  L  HSE+LA+   L     +
Sbjct: 946  TPVIQETLKEAERRLREELGYVYGLKHELHDIDDESKEENLRAHSEKLAIGLALATGGLN 1005

Query: 556  VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
              G  +RV KNLRVC DCH  +K +S+ITK   VVRDA R+H F+DG CSC D+
Sbjct: 1006 QKGKTIRVFKNLRVCVDCHEFIKGLSKITKIAYVVRDAVRFHSFEDGCCSCGDY 1059



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 132/277 (47%), Gaps = 36/277 (12%)

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           +  + L+DMY KC  P  A  VFDS+  +N VSW+A++S +  +G  K ++ +F      
Sbjct: 413 ITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFS----- 467

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
                                     EM R+G+   +    S+ + AC     LE G QI
Sbjct: 468 --------------------------EMGRQGI-YPNEFTFSTNLKACGLLNALEKGLQI 500

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG  + +G+E  + + N++VDMY+KC  I  A+ +F R+  + ++SW ++I G    G  
Sbjct: 501 HGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYG 560

Query: 321 EETLALYDEMVSAGVK--PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
            + L  +  M  A +K  P+E T   L+ ACS  G++  G+++   ++      PS    
Sbjct: 561 SKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATI 620

Query: 379 T-CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           T  L+DL  + G+L  A      +  E    +W++L+
Sbjct: 621 TGSLVDLYVKCGYLFSARKAFDQIK-EKTMISWSSLI 656



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/322 (22%), Positives = 143/322 (44%), Gaps = 49/322 (15%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLH--QYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR 67
           L+ C+   +    K +H  +++ G H      +  +L+D Y KC  +  A    +++ ++
Sbjct: 588 LKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEK 647

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
             +SW+S++  Y Q     + + +F  +  L+  Q D F  +S++         R GKQ+
Sbjct: 648 TMISWSSLILGYAQEGEFVEAMGLFKRLQELNS-QIDSFALSSIIGVFADFALLRQGKQM 706

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
            A  V  P   +  V +S+VDMY KCGL + A   F  ++LK+ +SWT +++ Y + G  
Sbjct: 707 QALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLG 766

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
           K ++ I                               F EM R  ++  D +   +++ A
Sbjct: 767 KKSVRI-------------------------------FYEMLRHNIE-PDEVCYLAVLSA 794

Query: 248 CANFAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           C++  +++ G+++       HG+   + + +C      +VD+  +   +  AK +   M 
Sbjct: 795 CSHSGMIKEGEELFSKLLETHGIKPRVEHYAC------VVDLLGRAGRLKEAKHLIDTMP 848

Query: 301 RK-DVVSWTSIIVGTAQHGQAE 321
            K +V  W +++     HG  E
Sbjct: 849 IKPNVGIWQTLLSLCRVHGDIE 870


>gi|356575510|ref|XP_003555883.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Glycine max]
          Length = 618

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/607 (35%), Positives = 345/607 (56%), Gaps = 36/607 (5%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           HYL  L++CA+ + ++  +  HAQII++GL       N LI+ Y KC LV  A     EM
Sbjct: 47  HYL--LQLCAKTRSSMGGRACHAQIIRIGLEMDILTSNMLINMYSKCSLVDSARKKFNEM 104

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           P +  VSW +++ A  Q    ++ + +   M   +    + F  +S++  C    A    
Sbjct: 105 PVKSLVSWNTVIGALTQNAEDREALKLLIQM-QREGTPFNEFTISSVLCNCAFKCAILEC 163

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
            Q+HA  +                           +A  DS    N    TA+L  YA+ 
Sbjct: 164 MQLHAFSI---------------------------KAAIDS----NCFVGTALLHVYAKC 192

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
              KDA ++FE  P +N   W+++++G VQ+    +A   F   +  G D  DP ++SS 
Sbjct: 193 SSIKDASQMFESMPEKNAVTWSSMMAGYVQNGFHEEALLIFRNAQLMGFD-QDPFMISSA 251

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF-GRMRRKD 303
           V ACA  A L  GKQ+H +    G+ S +++S++++DMYAKC  I  A  +F G +  + 
Sbjct: 252 VSACAGLATLIEGKQVHAISHKSGFGSNIYVSSSLIDMYAKCGCIREAYLVFQGVLEVRS 311

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           +V W ++I G A+H +A E + L+++M   G  P++VT+V ++ ACSH+GL  +G+K F 
Sbjct: 312 IVLWNAMISGFARHARAPEAMILFEKMQQRGFFPDDVTYVCVLNACSHMGLHEEGQKYFD 371

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
            M+  + ++PS+ HY+C++D+L R+G + +A +LI+ MPF      W +LL++CK + N 
Sbjct: 372 LMVRQHNLSPSVLHYSCMIDILGRAGLVHKAYDLIERMPFNATSSMWGSLLASCKIYGNI 431

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           E     A +L  ++P +  ++ILL+N+YA+   W  V++ RKL+   +V+KE G S+IE 
Sbjct: 432 EFAEIAAKYLFEMEPNNAGNHILLANIYAANKKWDEVARARKLLRETDVRKERGTSWIEI 491

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
               H F  GE +HP  D+I+  L  L  E+K+  Y  DTS+ LHD+E+  K+  L  HS
Sbjct: 492 KNKIHSFTVGERNHPQIDDIYAKLDNLVVELKKLNYKVDTSNDLHDVEENRKQMLLRHHS 551

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           E+LA+ +GL+       +R++KNLR+CGDCH  MK++S+ T REI+VRD  R+HHFKDG 
Sbjct: 552 EKLAITFGLMCLPRDIPIRIIKNLRICGDCHTFMKLVSKSTSREIIVRDTNRFHHFKDGF 611

Query: 604 CSCNDFW 610
           CSC +FW
Sbjct: 612 CSCGEFW 618


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/587 (36%), Positives = 326/587 (55%), Gaps = 36/587 (6%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  +++ G      +   L+D Y KC  V  A  + + M  R  VSW S++  Y Q+  
Sbjct: 153 VHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGD 212

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            +  + IF  ML  + +QP +      + AC  LG    GK VH                
Sbjct: 213 AEGAMLIFQKMLD-EGVQPTNVTVMGALHACADLGDLERGKFVHK--------------- 256

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
                            + D +KL + VS   +++S Y++  R   A +IF+    + L 
Sbjct: 257 -----------------LVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLV 299

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            W A++ G  Q+    +A  +F EM+   +   D   + S++ A A  ++    K IHGL
Sbjct: 300 SWNAMILGYAQNGCVNEALNAFCEMQSRNIK-PDSFTMVSVIPALAELSIPRQAKWIHGL 358

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           VI    +  +F+  A+VDMYAKC  I  A+ +F  M  + V++W ++I G   HG  + +
Sbjct: 359 VIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTS 418

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           + L+ EM    +KPN++TF+  + ACSH GLV +G   F+SM +DYGI P++ HY  ++D
Sbjct: 419 VELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVD 478

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           LL R+G L++A + I+ MP +P    + A+L ACK H+N ++G + A  +  L P+D   
Sbjct: 479 LLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDGGY 538

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
           ++LL+N+YA+A+MW  V+KVR +M    ++K PG S +E G   H FY+G TSHP   +I
Sbjct: 539 HVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVHSFYSGTTSHPQSKKI 598

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
           +  L  L  E++  GYVPDT+S+ HD+E   K + L  HSE+LA+A+GLL +  GT + +
Sbjct: 599 YSYLETLVDEIRAAGYVPDTNSI-HDVEDDVKVQLLNTHSEKLAIAFGLLNTSTGTPIHI 657

Query: 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            KNLRVCGDCH   K IS +T REI+VRD  R+H FKDG CSC D+W
Sbjct: 658 RKNLRVCGDCHNATKYISLVTGREIIVRDMHRFHLFKDGVCSCGDYW 704



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 210/448 (46%), Gaps = 37/448 (8%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
           + ++ + L++C  +      K +H  +I  G          +++ Y KC  +  A+++ +
Sbjct: 30  VYNFTYLLKLCGDNSDLKRGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFD 89

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
            MP+RD V W ++++ Y Q    +  + +   M + +  +PD     S++ A       R
Sbjct: 90  RMPERDLVCWNTMISGYAQNGFAKVALMLVLRM-SEEGHRPDSITIVSILPAVADTRLLR 148

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           +G  VH   + + F     V ++LVDMY+KCG  + AR +FD +  +  VSW +M+  Y 
Sbjct: 149 IGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYV 208

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           +SG  + AM IF++                               M  EGV   +  V+ 
Sbjct: 209 QSGDAEGAMLIFQK-------------------------------MLDEGVQPTNVTVMG 237

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           ++  ACA+   LE GK +H LV  L  +S + + N+++ MY+KC  +  A DIF  +R K
Sbjct: 238 AL-HACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNK 296

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
            +VSW ++I+G AQ+G   E L  + EM S  +KP+  T V +I A + + +  + + + 
Sbjct: 297 TLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIH 356

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
             +I  + +  ++   T L+D+ ++ G +  A  L   M       TW A++     H  
Sbjct: 357 GLVIRRF-LDKNVFVMTALVDMYAKCGAIHTARKLFDMMNAR-HVITWNAMIDGYGTHGL 414

Query: 423 TEMGTRVANHLL--SLKPEDPSSYILLS 448
            +    +   +   ++KP D +    LS
Sbjct: 415 GKTSVELFKEMKKGTIKPNDITFLCALS 442



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 161/327 (49%), Gaps = 34/327 (10%)

Query: 75  ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134
           +L  Y +++     +S FS M   D ++P  + F  L+K CG     + GK++H   + S
Sbjct: 1   MLKGYAKSSSLDSALSFFSRM-KHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITS 59

Query: 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
            F  +    + +V+MYAKC   N                               DA  +F
Sbjct: 60  GFSWNLFAMTGVVNMYAKCRQIN-------------------------------DAYNMF 88

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
           ++ P R+L  W  ++SG  Q+     A    + M  EG    D + + SI+ A A+  +L
Sbjct: 89  DRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMSEEG-HRPDSITIVSILPAVADTRLL 147

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
            +G  +HG V+  G+ES + +S A+VDMY+KC  +  A+ IF  M  + VVSW S+I G 
Sbjct: 148 RIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGY 207

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
            Q G AE  + ++ +M+  GV+P  VT +G ++AC+ +G + +G+ + K +++   +   
Sbjct: 208 VQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHK-LVDQLKLDSD 266

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAM 401
           +     L+ + S+   +D A ++ K +
Sbjct: 267 VSVMNSLISMYSKCKRVDIAADIFKNL 293


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 215/601 (35%), Positives = 327/601 (54%), Gaps = 34/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +R C +       K +H  +I  G        N LID Y KC  +  A  + +    +D 
Sbjct: 329 IRACGQSGDLQVGKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDS 388

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W S++  Y Q+   ++ +  F  M+ +++ +PD   F  L+     L     G+ +H 
Sbjct: 389 VTWNSLINGYTQSGYYKEGLESFK-MMKMER-KPDSVTFVLLLSIFSQLADINQGRGIHC 446

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +   F  + ++ +SL+D+YAKCG  ++   VF  +   + +SW  ++++         
Sbjct: 447 DVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVH------ 500

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
               F+   V                      F    EMR EG+ + D   +  I+  C+
Sbjct: 501 ----FDDCTV---------------------GFQMINEMRTEGL-MPDEATVLGILPMCS 534

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
             AV   GK+IHG +   G+ES + I NA+++MY+KC  +     +F  M+ KDVV+WT+
Sbjct: 535 LLAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEKDVVTWTA 594

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I     +G+ ++ L  + +M  +GV P+ V F+  I+ACSH G+V +G + F  M  DY
Sbjct: 595 LISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLRFFDRMKTDY 654

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            + P ++HY C++DLL+RSG L +AE  I +MP +PD   W ALLSAC+   NT +  RV
Sbjct: 655 NLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRARGNTNIAQRV 714

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           +  +L L  +D   Y+L+SN+YA+   W  V  VR  M    +KKEPG S+IE  K  ++
Sbjct: 715 SKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSWIEIQKRVYV 774

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F  G+ S    D++ +LL  L   M + GYV D    LHD+E+ +K   L  HSERLA+A
Sbjct: 775 FRTGDKSFEQYDKVKDLLEYLVRLMAKEGYVADLQFALHDVEEDDKRDMLCGHSERLAIA 834

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GLL + PG+ L V+KNLRVCGDCH V K I++I +REI+VRDA R+H FKDG CSC D 
Sbjct: 835 FGLLNTKPGSPLLVMKNLRVCGDCHTVTKYITKIMQREILVRDANRFHRFKDGACSCGDH 894

Query: 610 W 610
           W
Sbjct: 895 W 895



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 114/420 (27%), Positives = 204/420 (48%), Gaps = 39/420 (9%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H   +++G      + N LID Y +   +  A ++ EEM  RD VSW S+++ Y     
Sbjct: 143 VHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGF 202

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            +  + ++     +  + PD F  +S++ ACGSL A + G  VH          D ++ +
Sbjct: 203 WEDALDMYHK-FRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIGIAGDVIIGN 261

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
            L+ MY K      AR VF  + +K+SV+W  M+  YA+ GR + ++++F          
Sbjct: 262 GLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLF---------- 311

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                       + ID F            + D L ++S + AC     L++GK +H  +
Sbjct: 312 -----------MDMIDGF------------VPDMLSITSTIRACGQSGDLQVGKFVHKYL 348

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           I  G+E      N ++DMYAKC D++AA+++F   + KD V+W S+I G  Q G  +E L
Sbjct: 349 IGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGL 408

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
             + +M+    KP+ VTFV L+   S +  + +GR +   +I+ +G    L     LLD+
Sbjct: 409 ESF-KMMKMERKPDSVTFVLLLSIFSQLADINQGRGIHCDVIK-FGFEAELIIGNSLLDV 466

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS--LKPEDPS 442
            ++ G +D+   +   M    D  +W  ++++  H  +  +G ++ N + +  L P++ +
Sbjct: 467 YAKCGEMDDLLKVFSYMS-AHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEAT 525



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 198/435 (45%), Gaps = 37/435 (8%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-DLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           ++T+H+ II  GL         LI  Y +  D +          P  +   W SI+ A  
Sbjct: 38  LRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALT 97

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
              L  + +  ++ M    KLQPD F F S++ +C  +    LG  VH   +   F  D 
Sbjct: 98  HNGLFTQALGYYTEMRE-KKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDL 156

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            + ++L+DMY++    +NAR VF+ +  ++SVSW +++S Y  +G  +DA++++ +    
Sbjct: 157 YIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHK---- 212

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
             F  T +V                           D   +SS++ AC +   ++ G  +
Sbjct: 213 --FRMTGMVP--------------------------DCFTMSSVLLACGSLMAVKEGVAV 244

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG++  +G    + I N ++ MY K   +  A+ +F +M  KD V+W ++I G AQ G+ 
Sbjct: 245 HGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRH 304

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           E ++ L+ +M+  G  P+ ++    I AC   G +  G+ + K +I   G          
Sbjct: 305 EASVKLFMDMID-GFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGS-GFECDTVACNI 362

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           L+D+ ++ G L  A+ +      + D  TW +L++        + G      +   +  D
Sbjct: 363 LIDMYAKCGDLLAAQEVFDTTKCK-DSVTWNSLINGYTQSGYYKEGLESFKMMKMERKPD 421

Query: 441 PSSYILLSNVYASAA 455
             +++LL ++++  A
Sbjct: 422 SVTFVLLLSIFSQLA 436


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/601 (35%), Positives = 333/601 (55%), Gaps = 34/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA  Q     + +HA  ++ G  +   +   ++D Y KC  V  A  + + M  R+ 
Sbjct: 334 LPACADAQALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNS 393

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++  Y +     + +++F  M+       D  V A+L  ACG LG    G++VH 
Sbjct: 394 VSWNAMIKGYAENGDATEALALFKRMVGEGVDVTDVSVLAAL-HACGELGFLDEGRRVHE 452

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V      +  V ++L+ MY KC                                R   
Sbjct: 453 LLVRIGLESNVNVMNALITMYCKCK-------------------------------RTDL 481

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A ++F++   +    W A++ G  Q+ +  DA   F  M+ E V   D   L SI+ A A
Sbjct: 482 AAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVK-PDSFTLVSIIPALA 540

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           + +     + IHG  I L  +  +++  A++DMYAKC  +  A+ +F   R + V++W +
Sbjct: 541 DISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNA 600

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G   HG  +  + L++EM S+G  PNE TF+ ++ ACSH GLV +G++ F SM EDY
Sbjct: 601 MIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACSHAGLVDEGQEYFSSMKEDY 660

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G+ P ++HY  ++DLL R+G L EA + I+ MP EP    + A+L ACK H+N E+    
Sbjct: 661 GLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVYGAMLGACKLHKNVELAEES 720

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  +  L+PE+   ++LL+N+YA+A++W+ V++VR  M    ++K PG+S ++     H 
Sbjct: 721 AQRIFELEPEEGVYHVLLANIYANASLWKDVARVRTAMEKKGLQKTPGWSIVQLKNEIHT 780

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           FY+G T+H    +I+  L +L  E+K  GYVPDT S+ HD+E   K + L  HSE+LA+A
Sbjct: 781 FYSGSTNHQQAKDIYARLAKLIEEIKAVGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIA 839

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           YGL+++ PGT +++ KNLRVC DCH   K+IS +T REI++RD  R+HHFKDGKCSC D+
Sbjct: 840 YGLIRTAPGTTIQIKKNLRVCKDCHNATKLISLVTGREIIMRDIQRFHHFKDGKCSCGDY 899

Query: 610 W 610
           W
Sbjct: 900 W 900



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 202/448 (45%), Gaps = 75/448 (16%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L++CA      T + +HAQ+   GL         L + Y KC     A  + + MP RD 
Sbjct: 232 LKLCAARADLATGRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDR 291

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W +++  Y +  L +  + +   M   D  +PD     S++ AC    A    ++VHA
Sbjct: 292 VAWNALVAGYARNGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHA 351

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V   F +   V ++++D+Y KCG  ++AR VFD ++ +NSVSW AM+  YA +G   +
Sbjct: 352 FAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATE 411

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +F++                               M  EGVD+ D  VL+++  AC 
Sbjct: 412 ALALFKR-------------------------------MVGEGVDVTDVSVLAAL-HACG 439

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               L+ G+++H L++ +G ES + + NA++ MY KC     A  +F  +  K  VSW +
Sbjct: 440 ELGFLDEGRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNA 499

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I+G  Q+G +E+ + L+  M    VKP+  T V +I A + +    + R      I  Y
Sbjct: 500 MILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLVSIIPALADISDPLQAR-----WIHGY 554

Query: 370 GITPSLQH----YTCLLDLLSRSGHLDEAENLIKAMP----------------------- 402
            I   L       T L+D+ ++ G +  A +L  +                         
Sbjct: 555 SIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVA 614

Query: 403 ---FE--------PDEPTWAALLSACKH 419
              FE        P+E T+ ++LSAC H
Sbjct: 615 VELFEEMKSSGKVPNETTFLSVLSACSH 642



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 116/483 (24%), Positives = 224/483 (46%), Gaps = 70/483 (14%)

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
           A +  A ++++L +  ++ F+ M       P    F SL+K C +      G+ VHA   
Sbjct: 194 ARLRAAASRSDL-RGALAAFAAMSPASGSGPVLRTFTSLLKLCAARADLATGRAVHAQLA 252

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
                 + +  ++L +MYAKC  P +AR VFD +  ++ V+W A+++ YAR+G  + A+ 
Sbjct: 253 ARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGLAEAAV- 311

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
                             G+V            + M+ E  +  D + L S++ ACA+  
Sbjct: 312 ------------------GMV------------VRMQEEDGERPDAVTLVSVLPACADAQ 341

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
            L   +++H   +  G++  + +S AI+D+Y KC  + +A+ +F  M+ ++ VSW ++I 
Sbjct: 342 ALGACREVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIK 401

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G A++G A E LAL+  MV  GV   +V+ +  ++AC  +G + +GR++ + ++   G+ 
Sbjct: 402 GYAENGDATEALALFKRMVGEGVDVTDVSVLAALHACGELGFLDEGRRVHELLVR-IGLE 460

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
            ++     L+ +  +    D A  +   + ++    +W A++  C  + ++E   R+ + 
Sbjct: 461 SNVNVMNALITMYCKCKRTDLAAQVFDELGYKT-RVSWNAMILGCTQNGSSEDAVRLFSR 519

Query: 433 LLSLKPEDPSSYILLSNVYASA-------AMWQHVSKVR--------KLMSVMEVKKEPG 477
            + L+   P S+ L+S + A A       A W H   +R         L +++++  + G
Sbjct: 520 -MQLENVKPDSFTLVSIIPALADISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCG 578

Query: 478 -----YSYIEFGKGSHIF--------YAGETSHPLKDEIFELLTELDAEMKRRGYVPDTS 524
                 S     +  H+         Y    S  +  E+FE       EMK  G VP+ +
Sbjct: 579 RVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFE-------EMKSSGKVPNET 631

Query: 525 SVL 527
           + L
Sbjct: 632 TFL 634


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/604 (35%), Positives = 339/604 (56%), Gaps = 39/604 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C R         LH+ ++K G +       +L+  Y     +  AH L +E+P R  
Sbjct: 118 LKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSV 177

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W ++ + Y  +   ++ I +F  M+ +  ++PD +    ++ AC  +G    G+ +  
Sbjct: 178 VTWTALFSGYTTSGRHREAIDLFKKMVEMG-VKPDSYFIVQVLSACVHVGDLDSGEWIVK 236

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                    +  V+++LV++YAKCG    AR+VFDS+  K+ V+W+ M+  YA +   K+
Sbjct: 237 YMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKE 296

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG--- 246
            +E+F Q    NL               + D F                    SIVG   
Sbjct: 297 GIELFLQMLQENL---------------KPDQF--------------------SIVGFLS 321

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           +CA+   L+LG+    L+    + + LF++NA++DMYAKC  +    ++F  M+ KD+V 
Sbjct: 322 SCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVI 381

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
             + I G A++G  + + A++ +    G+ P+  TF+GL+  C H GL+  G + F ++ 
Sbjct: 382 MNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAIS 441

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             Y +  +++HY C++DL  R+G LD+A  LI  MP  P+   W ALLS C+  ++T++ 
Sbjct: 442 CVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLA 501

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
             V   L++L+P +  +Y+ LSN+Y+    W   ++VR +M+   +KK PGYS+IE    
Sbjct: 502 ETVLKELIALEPWNAGNYVQLSNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELEGK 561

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            H F A + SHPL D+I+  L +L  EM+  G+VP T  V  D+E++EKER L +HSE+L
Sbjct: 562 VHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEEEEKERVLGYHSEKL 621

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           AVA GL+ +  G V+RVVKNLRVCGDCH VMK+IS+IT+REIVVRD  R+H F +G CSC
Sbjct: 622 AVALGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSC 681

Query: 607 NDFW 610
           ND+W
Sbjct: 682 NDYW 685



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 181/385 (47%), Gaps = 44/385 (11%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           +K +H  +I   LH    L N L+         +Y++ L       +   + S++  +  
Sbjct: 29  LKQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVN 88

Query: 82  ANLPQKTISIFSTMLALDK--LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            +L  +T+ +F   L++ K  L    F F  ++KAC    + +LG  +H+  V       
Sbjct: 89  NHLFHETLDLF---LSIRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVV------- 138

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
                       KCG  ++  A+            T++LS Y+ SGR  DA ++F++ P 
Sbjct: 139 ------------KCGFNHDVAAM------------TSLLSIYSGSGRLNDAHKLFDEIPD 174

Query: 200 RNLFLWTALVSGLVQS---RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
           R++  WTAL SG   S   R  ID F   +EM   GV   D   +  ++ AC +   L+ 
Sbjct: 175 RSVVTWTALFSGYTTSGRHREAIDLFKKMVEM---GVK-PDSYFIVQVLSACVHVGDLDS 230

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           G+ I   +  +  +   F+   +V++YAKC  +  A+ +F  M  KD+V+W+++I G A 
Sbjct: 231 GEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWSTMIQGYAS 290

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           +   +E + L+ +M+   +KP++ + VG + +C+ +G +  G +   S+I+ +    +L 
Sbjct: 291 NSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLF 349

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAM 401
               L+D+ ++ G +     + K M
Sbjct: 350 MANALIDMYAKCGAMARGFEVFKEM 374


>gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980
 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 603

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/559 (38%), Positives = 322/559 (57%), Gaps = 36/559 (6%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           + YA HL E M + D V + S+   Y++   P +  S+F  +L  D + PD++ F SL+K
Sbjct: 79  MSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILE-DGILPDNYTFPSLLK 137

Query: 114 ACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSV 172
           AC    A   G+Q+H C  +    DD+V V  +L++MY +C   ++AR VFD I     V
Sbjct: 138 ACAVAKALEEGRQLH-CLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVV 196

Query: 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
            + AM++ YAR  R  +A+ +F +            + G     NEI             
Sbjct: 197 CYNAMITGYARRNRPNEALSLFRE------------MQGKYLKPNEI------------- 231

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
                   L S++ +CA    L+LGK IH       +   + ++ A++DM+AKC  +  A
Sbjct: 232 -------TLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDA 284

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
             IF +MR KD  +W+++IV  A HG+AE+++ +++ M S  V+P+E+TF+GL+ ACSH 
Sbjct: 285 VSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHT 344

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           G V +GRK F  M+  +GI PS++HY  ++DLLSR+G+L++A   I  +P  P    W  
Sbjct: 345 GRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRI 404

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
           LL+AC  H N ++  +V+  +  L       Y++LSN+YA    W++V  +RK+M   + 
Sbjct: 405 LLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKA 464

Query: 473 KKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH-DME 531
            K PG S IE     H F++G+       ++   L E+  E+K  GYVPDTS V+H +M 
Sbjct: 465 VKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMN 524

Query: 532 QKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVR 591
            +EKE  L +HSE+LA+ +GLL + PGT +RVVKNLRVC DCH   K+IS I  R++V+R
Sbjct: 525 DQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLR 584

Query: 592 DATRYHHFKDGKCSCNDFW 610
           D  R+HHF+DGKCSC DFW
Sbjct: 585 DVQRFHHFEDGKCSCGDFW 603



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 107/193 (55%), Gaps = 1/193 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA  +     + LH   +KLGL     +  TLI+ Y +C+ V  A  + + + +   
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCV 195

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V + +++T Y + N P + +S+F  M     L+P+     S++ +C  LG+  LGK +H 
Sbjct: 196 VCYNAMITGYARRNRPNEALSLFREMQG-KYLKPNEITLLSVLSSCALLGSLDLGKWIHK 254

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 FC    V ++L+DM+AKCG  ++A ++F+ ++ K++ +W+AM+ AYA  G+ + 
Sbjct: 255 YAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEK 314

Query: 190 AMEIFEQAPVRNL 202
           +M +FE+    N+
Sbjct: 315 SMLMFERMRSENV 327



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 33/164 (20%)

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
           S +  A+ +F  M   D+V + S+  G ++     E  +L+ E++  G+ P+  TF  L+
Sbjct: 77  SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136

Query: 347 YACSHVGLVGKGRKLF---------------KSMIEDYG---------------ITPSLQ 376
            AC+    + +GR+L                 ++I  Y                + P + 
Sbjct: 137 KACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVV 196

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMP---FEPDEPTWAALLSAC 417
            Y  ++   +R    +EA +L + M     +P+E T  ++LS+C
Sbjct: 197 CYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSC 240


>gi|326519957|dbj|BAK03903.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 598

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/543 (37%), Positives = 330/543 (60%), Gaps = 8/543 (1%)

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG----SLGATRLGKQVHA 129
           +++ A+  +  PQ  + +++ ++    L P      SL+K+        GA RL   VHA
Sbjct: 58  ALIRAHASSGRPQAALPLYAHLIRAG-LFPTPHTLPSLLKSLALSPAVPGARRLALAVHA 116

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKC-GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
             V        +V ++L+ ++A   G   +A  +  +    ++ ++  +++A+AR+GR  
Sbjct: 117 HAVRLGLAGFLLVNNALIRVHAGLLGRLADAHLLLRTSAAVDASTFNTLITAHARAGRVA 176

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           DA  +F++ P RN   W+A+V+G VQ+ +  +A   F +M+ +GV   D  VL  ++ AC
Sbjct: 177 DARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQAQGVR-PDDTVLVGVLAAC 235

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A    LE GK +HG + A      +F+  A+VDMYAKC ++    ++F  M+ K+V++WT
Sbjct: 236 AQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWT 295

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++I G A HG+  ++L L+ +M S+GVKP+++ F+G + AC+H GLV KGR+LF SM+ +
Sbjct: 296 TMIKGLAMHGRGSDSLTLFSQMESSGVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNN 355

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YGI P ++HY C++DLL+R+G L EA ++++ MP +PD   W AL++ C+ H+N E+   
Sbjct: 356 YGIKPKIEHYGCMVDLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVELAEY 415

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
           V  H + L+P+   +Y+LL N+Y+++       ++R LM    V+K PG S +E     H
Sbjct: 416 VIKHWIELEPDKSGAYVLLGNIYSASGRHASAREIRNLMREKGVEKTPGCSNVEIKGVIH 475

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMK-RRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
            F  G+ SHP   +I     E+D+ ++   GYVPD   VL D+E++E E  L  HSE+LA
Sbjct: 476 QFIVGDLSHPRIKDILTKWYEIDSRIRLEEGYVPDKKEVLLDIEEEEMESALSRHSEKLA 535

Query: 548 VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
           +A+ L+ +     +R+VKNLRVC DCH V K+IS++  REI+VRD TR+H FKDG CSC 
Sbjct: 536 IAFALISTEDYMPIRIVKNLRVCQDCHHVTKLISKVYGREIIVRDRTRFHLFKDGTCSCK 595

Query: 608 DFW 610
           D+W
Sbjct: 596 DYW 598



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 132/282 (46%), Gaps = 35/282 (12%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NTLI A+ +   V  A  L +EMP+R+ VSW++++  Y QA   ++ + +FS M A   +
Sbjct: 163 NTLITAHARAGRVADARSLFDEMPERNAVSWSAMVNGYVQAGDGREALGVFSQMQA-QGV 221

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PD  V   ++ AC  LGA   GK VH     +       + ++LVDMYAKCG       
Sbjct: 222 RPDDTVLVGVLAACAQLGALEQGKWVHGYLKANNIRMTVFLGTALVDMYAKCGEVQLGME 281

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF+ +K KN ++WT M+   A  GR  D++ +F Q                         
Sbjct: 282 VFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQ------------------------- 316

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI-HGLVIALGYESCLFISNAIV 280
                 M   GV   D   + ++  AC +  +++ G+++ + +V   G +  +     +V
Sbjct: 317 ------MESSGVKPDDIAFIGALC-ACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMV 369

Query: 281 DMYAKCSDIIAAKDIFGRMRRK-DVVSWTSIIVGTAQHGQAE 321
           D+ A+   +  A+D+  +M  K D + W +++ G   H   E
Sbjct: 370 DLLARNGLLSEARDMVEKMPMKPDALIWGALMAGCRFHKNVE 411



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/143 (22%), Positives = 68/143 (47%), Gaps = 3/143 (2%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   L+D Y KC  VQ    + E M  ++ ++W +++           ++++FS M +  
Sbjct: 262 LGTALVDMYAKCGEVQLGMEVFEGMKDKNVLAWTTMIKGLAMHGRGSDSLTLFSQMES-S 320

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNN 158
            ++PD   F   + AC   G    G+++    V +      +     +VD+ A+ GL + 
Sbjct: 321 GVKPDDIAFIGALCACTHTGLVDKGRELFNSMVNNYGIKPKIEHYGCMVDLLARNGLLSE 380

Query: 159 ARAVFDSIKLK-NSVSWTAMLSA 180
           AR + + + +K +++ W A+++ 
Sbjct: 381 ARDMVEKMPMKPDALIWGALMAG 403


>gi|326497609|dbj|BAK05894.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 676

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/569 (37%), Positives = 324/569 (56%), Gaps = 34/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           +++++ Y KC  +  A  + + M +RD V+W++++T +  A  P + I ++  M   D L
Sbjct: 142 SSVLNLYAKCGAMDDAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRR-DGL 200

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           + D  V   +++AC + G  R+G  VH   +      D V+ +SLVDMYAK GL + AR 
Sbjct: 201 EADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQAR- 259

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
                                          +FE  P RN   W+AL+S L Q  N  +A
Sbjct: 260 ------------------------------RVFELMPHRNDVSWSALISQLAQYGNADEA 289

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M+  G+      V+ +++ AC++  +L+LGK IHG ++    E    +  A++D
Sbjct: 290 LGLFRMMQVSGLHPNSGPVVGALL-ACSDLGLLKLGKSIHGFILRT-LELDRMVGTAVID 347

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY+KC  + +A+ +F ++  +D++SW  +I     HG+  + L+L+ EM    V+P+  T
Sbjct: 348 MYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRDALSLFQEMKRNEVRPDHAT 407

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F  L+ A SH GLV +G+  F  M+ +YGI P  +H  C++DLL+RSG ++EA  L+ ++
Sbjct: 408 FASLLSALSHSGLVEEGKFWFNCMVNEYGIEPGEKHLVCIVDLLARSGLVEEANGLVASL 467

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
             +P      ALLS C ++   E+G   A  +L L+P D     L+SN+YA+A  W  V 
Sbjct: 468 HSKPTISILVALLSGCLNNNKLELGESTAEKILELQPGDVGVLALVSNLYAAAKNWYKVR 527

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           +VRKLM     KK PG S IE     H F   + SHP   +I +++ +LD+EM++ GY+P
Sbjct: 528 EVRKLMKDHGSKKAPGCSSIEIRGALHTFVMEDQSHPQHRQILQMVMKLDSEMRKMGYIP 587

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
            T  V HD+E+  KE+ L  HSERLA A+GLL + PGT L V+KNLRVCGDCH  +K +S
Sbjct: 588 KTEFVYHDLEEGVKEQLLSRHSERLATAFGLLNTSPGTRLVVIKNLRVCGDCHDAIKYMS 647

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I  REIVVRDA R+HHFKDG CSC D+W
Sbjct: 648 KIADREIVVRDAKRFHHFKDGACSCGDYW 676



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 183/383 (47%), Gaps = 39/383 (10%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHV--SWASILTAYNQANLPQKTISIFSTMLA 97
           L + L  AY +   +  A   L   P       +W ++L A+++   P + + +F  +  
Sbjct: 38  LSSCLATAYARAGDLAAAESTLATAPTSPSSIPAWNALLAAHSRGASPHEALRVFRALPP 97

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
               +PD   F   + AC  LG    G+ V      + + +D  V SS++++YAKCG  +
Sbjct: 98  --AARPDSTTFTLALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMD 155

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
           +A  VFD ++ ++ V+W+ M++ +  +G+   A+E+                        
Sbjct: 156 DAVKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEM------------------------ 191

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
                  ++ MRR+G++  D +V+  ++ ACA      +G  +HG ++    +  + IS 
Sbjct: 192 -------YMRMRRDGLE-ADEVVIVGVMQACAATGDARMGASVHGYLLRHAMQMDVVIST 243

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           ++VDMYAK      A+ +F  M  ++ VSW+++I   AQ+G A+E L L+  M  +G+ P
Sbjct: 244 SLVDMYAKNGLFDQARRVFELMPHRNDVSWSALISQLAQYGNADEALGLFRMMQVSGLHP 303

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           N    VG + ACS +GL+  G+ +   ++    +   +   T ++D+ S+ G L  A+ L
Sbjct: 304 NSGPVVGALLACSDLGLLKLGKSIHGFILRTLELDRMVG--TAVIDMYSKCGSLSSAQML 361

Query: 398 IKAMPFEPDEPTWAALLSACKHH 420
              +    D  +W  +++ C  H
Sbjct: 362 FDKV-VSRDLISWNVMIACCGAH 383



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 100/187 (53%), Gaps = 2/187 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ CA    A    ++H  +++  +     +  +L+D Y K  L   A  + E MP R+ 
Sbjct: 211 MQACAATGDARMGASVHGYLLRHAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRND 270

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW+++++   Q     + + +F  M+ +  L P+       + AC  LG  +LGK +H 
Sbjct: 271 VSWSALISQLAQYGNADEALGLFR-MMQVSGLHPNSGPVVGALLACSDLGLLKLGKSIHG 329

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
            F+L     D +V ++++DMY+KCG  ++A+ +FD +  ++ +SW  M++     GR +D
Sbjct: 330 -FILRTLELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIACCGAHGRGRD 388

Query: 190 AMEIFEQ 196
           A+ +F++
Sbjct: 389 ALSLFQE 395



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 124/252 (49%), Gaps = 6/252 (2%)

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVR--NLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
           + + +AYAR+G    A      AP    ++  W AL++   +  +  +A   F  +    
Sbjct: 40  SCLATAYARAGDLAAAESTLATAPTSPSSIPAWNALLAAHSRGASPHEALRVFRALPPAA 99

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
               D    +  + ACA    L  G+ +       GY + +F+ ++++++YAKC  +  A
Sbjct: 100 RP--DSTTFTLALSACARLGDLATGEVVTDRASGAGYGNDIFVCSSVLNLYAKCGAMDDA 157

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
             +F RMR++D V+W++++ G    GQ  + + +Y  M   G++ +EV  VG++ AC+  
Sbjct: 158 VKVFDRMRKRDRVTWSTMVTGFVNAGQPVQAIEMYMRMRRDGLEADEVVIVGVMQACAAT 217

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           G    G  +   ++  + +   +   T L+D+ +++G  D+A  + + MP   D  +W+A
Sbjct: 218 GDARMGASVHGYLLR-HAMQMDVVISTSLVDMYAKNGLFDQARRVFELMPHRND-VSWSA 275

Query: 413 LLSACKHHRNTE 424
           L+S    + N +
Sbjct: 276 LISQLAQYGNAD 287



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 96/221 (43%), Gaps = 28/221 (12%)

Query: 29  IIKLGLHQYGPLPNTL----------IDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           ++KLG   +G +  TL          ID Y KC  +  A  L +++  RD +SW  ++  
Sbjct: 320 LLKLGKSIHGFILRTLELDRMVGTAVIDMYSKCGSLSSAQMLFDKVVSRDLISWNVMIAC 379

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV----LS 134
                  +  +S+F  M   ++++PDH  FASL+ A    G    GK    C V    + 
Sbjct: 380 CGAHGRGRDALSLFQEM-KRNEVRPDHATFASLLSALSHSGLVEEGKFWFNCMVNEYGIE 438

Query: 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGR----KKD 189
           P     V    +VD+ A+ GL   A  +  S+  K ++S   A+LS    + +    +  
Sbjct: 439 PGEKHLVC---IVDLLARSGLVEEANGLVASLHSKPTISILVALLSGCLNNNKLELGEST 495

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
           A +I E  P     L  ALVS L  +      +Y   E+R+
Sbjct: 496 AEKILELQPGDVGVL--ALVSNLYAAAKN---WYKVREVRK 531


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/604 (35%), Positives = 340/604 (56%), Gaps = 39/604 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C R         LH+ ++K G +       +L+  Y     +  AH + EE+P+R  
Sbjct: 118 LKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSV 177

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W ++ + Y  A   ++ I +F  M+ +  ++PD +    ++ AC  +G    G+ +  
Sbjct: 178 VTWTALFSGYTTAGKHREAIDLFKKMVEMG-VRPDSYFIVQVLSACVHVGDLDSGEWIVK 236

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                    +  V+++LV++YAKCG    AR+VFDS+  K+ V+W+ M+  YA +   K+
Sbjct: 237 HMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKE 296

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG--- 246
            +E F Q               ++Q   + D F                    SIVG   
Sbjct: 297 GIEFFLQ---------------MLQENLKPDQF--------------------SIVGFLS 321

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           +CA+   L+LG+    L+    + + LF++NA++DMYAKC  +    ++F  M+ KD+V 
Sbjct: 322 SCASLGALDLGEWGISLIDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVI 381

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
             + I G A++G  + + A++ +    G+ P+  TF+GL+  C H GL+  G + F ++ 
Sbjct: 382 MNAAISGLAKNGHVKLSFAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAIS 441

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             Y +  +++HY C++DL  R+G LD+A  LI  MP  P+   W ALLS C+  ++T++ 
Sbjct: 442 CVYALKRTVEHYGCMVDLWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLA 501

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
             V   L++L+P +  +Y+ LSN+Y+ +  W   ++VR +M+   +KK PGYS+IE    
Sbjct: 502 ETVLKELIALEPWNAGNYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELEGT 561

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            H F A + SHPL D+I+  L +L  EM+  G+VP T  V  D+E +EKER L  HSE+L
Sbjct: 562 VHEFLADDKSHPLSDKIYAKLEDLGNEMRLMGFVPTTEFVFFDVEDEEKERVLGHHSEKL 621

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           AVA+GL+ +  G V+RVVKNLRVCGDCH VMK+IS+IT+REIVVRD  R+H F +G CSC
Sbjct: 622 AVAFGLISTDHGQVIRVVKNLRVCGDCHEVMKLISKITRREIVVRDNNRFHCFTNGSCSC 681

Query: 607 NDFW 610
           ND+W
Sbjct: 682 NDYW 685



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 177/385 (45%), Gaps = 44/385 (11%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           +K +H  +I   LH    L N L+          Y+  L       +   + +++  +  
Sbjct: 29  LKQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLLFSHTQFPNIFLYNTLINGFVN 88

Query: 82  ANLPQKTISIFSTMLALDK--LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            +L  +T+ +F   L++ K  L    F F  ++KAC      +LG  +H+  V       
Sbjct: 89  NHLFHETLDLF---LSIRKHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVV------- 138

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
                       KCG  ++  A+            T++LS Y+ SGR  DA ++FE+ P 
Sbjct: 139 ------------KCGFNHDVAAM------------TSLLSIYSGSGRLNDAHKVFEEIPE 174

Query: 200 RNLFLWTALVSGLVQS---RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
           R++  WTAL SG   +   R  ID F   +EM   GV   D   +  ++ AC +   L+ 
Sbjct: 175 RSVVTWTALFSGYTTAGKHREAIDLFKKMVEM---GVR-PDSYFIVQVLSACVHVGDLDS 230

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           G+ I   +  +  +   F+   +V++YAKC  +  A+ +F  M  KD+V+W+++I G A 
Sbjct: 231 GEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYAS 290

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           +   +E +  + +M+   +KP++ + VG + +C+ +G +  G +   S+I+ +    +L 
Sbjct: 291 NSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLG-EWGISLIDRHEFLTNLF 349

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAM 401
               L+D+ ++ G +     + K M
Sbjct: 350 MANALIDMYAKCGAMARGFEVFKEM 374


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/588 (35%), Positives = 341/588 (57%), Gaps = 34/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA++I         L   L+  Y +C  +  A ++L+ MP+R  VSW ++++ Y+Q 
Sbjct: 62  RQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQT 121

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + +F  ML    + P+ +  A+++ +C    +   GKQVH+  V + F     V
Sbjct: 122 ERHVEALDLFIKMLRAGCI-PNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFV 180

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            SSL+DMYAK      AR VFD++  ++ VS TA++S YA+ G  ++A+++F Q      
Sbjct: 181 GSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQ------ 234

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                               YS      EG+   + +  +++V A +  A L+ GKQ+H 
Sbjct: 235 -------------------LYS------EGMQ-CNHVTFTTLVTALSGLASLDYGKQVHA 268

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L++       + + N+++DMY+KC  ++ ++ +F  M  + VVSW ++++G  +HG   E
Sbjct: 269 LILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHE 328

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            ++L+ ++    VKP+ VT + ++  CSH GLV +G  +F +++++        HY C++
Sbjct: 329 VISLFKDL-HKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCII 387

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL RSG L++A NLI+ MPFE     W +LL AC+ H N  +G  VA  LL ++PE+  
Sbjct: 388 DLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAG 447

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y++LSN+YA+A MW+ V KVRKLM    V KEPG S+I   K  H F++ E  HP K +
Sbjct: 448 NYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKD 507

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I   + E+  ++K  G+VPD S VLHD++ ++KER L  HSE+LA+ +GL+ + PG  +R
Sbjct: 508 INAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIR 567

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V+KNLR+C DCH   K +S++ +REI +RD  R+H    G C+C D+W
Sbjct: 568 VMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 615



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 102/186 (54%), Gaps = 1/186 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C+  Q     K +H+ ++K     +  + ++L+D Y K + +Q A  + + +P+RD 
Sbjct: 150 LTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDV 209

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS  +I++ Y Q  L ++ + +F  + + + +Q +H  F +LV A   L +   GKQVHA
Sbjct: 210 VSCTAIISGYAQKGLDEEALDLFRQLYS-EGMQCNHVTFTTLVTALSGLASLDYGKQVHA 268

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +         +++SL+DMY+KCG    +R VFD++  ++ VSW AML  Y R G   +
Sbjct: 269 LILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHE 328

Query: 190 AMEIFE 195
            + +F+
Sbjct: 329 VISLFK 334



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 10/176 (5%)

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + AC     L  G+Q+H  +I   Y   +F+   +V MY +C  +  A+++  RM  + V
Sbjct: 49  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 108

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK---- 360
           VSWT++I G +Q  +  E L L+ +M+ AG  PNE T   ++ +CS    + +G++    
Sbjct: 109 VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 168

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           L K+  E +    S      LLD+ ++S ++ EA  +   +P E D  +  A++S 
Sbjct: 169 LVKTNFESHMFVGS-----SLLDMYAKSENIQEARRVFDTLP-ERDVVSCTAIISG 218


>gi|225424252|ref|XP_002280792.1| PREDICTED: pentatricopeptide repeat-containing protein At2g01510,
           mitochondrial [Vitis vinifera]
 gi|297737690|emb|CBI26891.3| unnamed protein product [Vitis vinifera]
          Length = 610

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/559 (38%), Positives = 315/559 (56%), Gaps = 35/559 (6%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           + YA  L +EM +     W +I+  Y +  +P K +S++  M  L  ++PD F F  ++K
Sbjct: 85  MSYARQLFDEMHKPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLG-VRPDPFTFPFVIK 143

Query: 114 ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS 173
           AC  L     G  +H   V         V++ L+ MY K G    A  +F S+  ++ V+
Sbjct: 144 ACAELAELWAGLGMHGHVVKHGLEFVAAVRTELMIMYVKFGELGCAEFLFGSMVERDLVA 203

Query: 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233
           W A+++   ++G    A++                               SF EM   G+
Sbjct: 204 WNALIAVCVQTGFSSKALQ-------------------------------SFREMGMAGI 232

Query: 234 DIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
              D + + S + AC +   LE G++I+      G +S + + NA +DM AKC D+  A 
Sbjct: 233 K-PDSVTIVSALSACGHLGCLETGEEIYEFAREEGIDSNIIVHNARLDMCAKCGDMDKAM 291

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
           ++F  M +++V+SW+++I G A +G++E+ LAL+  M + GV+PN VTF+ ++ ACSH G
Sbjct: 292 NLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKNQGVQPNYVTFLAVLSACSHTG 351

Query: 354 LVGKGRKLFKSMIE--DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
            V +G + F  M +  D  I P  +HY C++DLL RSGHL+EA N IK MP E D   W 
Sbjct: 352 RVNEGWQYFNFMAQSDDKNIQPRKEHYACMVDLLGRSGHLEEAYNFIKIMPIEADPGIWG 411

Query: 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
           ALL AC  H+N ++G  VA+ L  L PE  S ++LLSN+YA+A  W  V KVR+ M    
Sbjct: 412 ALLGACAIHQNIKLGQHVADLLFELAPEIASYHVLLSNMYAAAGRWHCVEKVRQRMKKKG 471

Query: 472 VKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDME 531
            +K   YS +EF    HI Y G+ SHP    I   L +L  +MK  GY+P+T SV HD+E
Sbjct: 472 ARKVAAYSSVEFNGEIHILYGGDKSHPQSASILAKLEDLLKQMKSMGYIPETDSVFHDVE 531

Query: 532 QKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVR 591
            +EKE  L  HSE+LA+A+ L+   P   +RV+KNLR+CGDCH   K++SRIT REI++R
Sbjct: 532 DEEKESTLSTHSEKLAIAFSLINGSPKFPIRVMKNLRICGDCHTFCKLVSRITMREIIMR 591

Query: 592 DATRYHHFKDGKCSCNDFW 610
           D  R+HHFK+G CSC DFW
Sbjct: 592 DKNRFHHFKNGICSCKDFW 610



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 67/315 (21%), Positives = 116/315 (36%), Gaps = 87/315 (27%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N  +D   KC  +  A +L +EMPQR+ +SW++++  Y      +K +++FS M     +
Sbjct: 275 NARLDMCAKCGDMDKAMNLFDEMPQRNVISWSTVIGGYAVNGESEKALALFSRMKN-QGV 333

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           QP++  F +++ AC   G    G Q    F      DD  ++            P     
Sbjct: 334 QPNYVTFLAVLSACSHTGRVNEGWQY---FNFMAQSDDKNIQ------------PRKEH- 377

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
                       +  M+    RSG  ++A    +  P+                      
Sbjct: 378 ------------YACMVDLLGRSGHLEEAYNFIKIMPIE--------------------- 404

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC---LFISNA 278
                          DP +  +++GACA    ++LG+ +  L+  L  E     + +SN 
Sbjct: 405 --------------ADPGIWGALLGACAIHQNIKLGQHVADLLFELAPEIASYHVLLSN- 449

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRK---DVVSWTSIIV---------GTAQHGQAEETLA- 325
              MYA        + +  RM++K    V +++S+           G   H Q+   LA 
Sbjct: 450 ---MYAAAGRWHCVEKVRQRMKKKGARKVAAYSSVEFNGEIHILYGGDKSHPQSASILAK 506

Query: 326 ---LYDEMVSAGVKP 337
              L  +M S G  P
Sbjct: 507 LEDLLKQMKSMGYIP 521



 Score = 45.1 bits (105), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 40/177 (22%), Positives = 81/177 (45%), Gaps = 4/177 (2%)

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           L++++ +C++   L        L   L  ++ L              D+  A+ +F  M 
Sbjct: 39  LTTLLQSCSSHPSLLKQLHALLLTTGLSIKNALITQLLTSLTLL--GDMSYARQLFDEMH 96

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
           +     W +I+ G  ++G  ++ +++Y +M   GV+P+  TF  +I AC+ +  +  G  
Sbjct: 97  KPRPFLWNTIMKGYVKNGIPDKAVSVYGKMRHLGVRPDPFTFPFVIKACAELAELWAGLG 156

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417
           +   +++ +G+       T L+ +  + G L  AE L  +M  E D   W AL++ C
Sbjct: 157 MHGHVVK-HGLEFVAAVRTELMIMYVKFGELGCAEFLFGSM-VERDLVAWNALIAVC 211


>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
 gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
          Length = 908

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 225/604 (37%), Positives = 344/604 (56%), Gaps = 38/604 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C+  + A   K LHA +I +GLH+   + N L+  Y K  L+  A  + + MP+RD 
Sbjct: 340 LAACSDPEFATEGKILHALVIHVGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDG 399

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL---GKQ 126
           V+W +++  +  +  P + +  F  M   + +  ++   ++++ AC  L    L   G  
Sbjct: 400 VTWNALIGGHADSEEPDEALKAFKLMRE-EGVPINYITISNVLGAC--LAPNDLLEHGMP 456

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +HA  +L+ F  D+ V++SL+ MYAKCG  N++  +FD +  KN+ +W AM++A A  G 
Sbjct: 457 IHAFIILTGFQSDEYVQNSLITMYAKCGDLNSSNNIFDRLTSKNASAWNAMMAANAHHGH 516

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
            ++A++                                 +EMRR GV+ VD    S  + 
Sbjct: 517 MEEALKFL-------------------------------LEMRRAGVN-VDEFSFSECLA 544

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           A A  A+LE G+Q+HGL + LG +S  F+++A +DMY KC +I     I  R   +  +S
Sbjct: 545 AAAKLAILEEGQQLHGLAVKLGCDSNPFVASATMDMYGKCGEIDDVLRIIPRPINRSRLS 604

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W  +    ++HG  E+    + EM++ GVKP+ VTFV L+ ACSH G+V +G   + SMI
Sbjct: 605 WNILTSSFSRHGFFEKAKETFHEMINLGVKPDHVTFVSLLSACSHGGMVEEGLAYYDSMI 664

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
           +++GI   + H  C++DLL RSG   EAE  IK MP  P +  W +LL+ACK H N E+G
Sbjct: 665 KEFGIPAKIGHCVCIIDLLGRSGRFAEAETFIKEMPVSPTDHVWRSLLAACKTHGNLELG 724

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
            +   +LL L P D S+Y+L SN+ A+   W+ V K+R+ M + ++KK+P  S+++    
Sbjct: 725 RKAVENLLKLDPSDDSAYVLYSNICATTGKWEDVEKIRRQMGLNKIKKKPACSWVKLKNK 784

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
             +F  G+ SHP   EI+  L EL   +K  GY+PD S  L D ++++KE  L+ HSERL
Sbjct: 785 LSLFGMGDHSHPQASEIYAKLEELKKMIKEAGYIPDISYALQDTDEEQKEHNLWNHSERL 844

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+AYGL+ S  G+ L++ KNLRVCGDCH V K  S I  R+IV+RD  R+H F  G+CSC
Sbjct: 845 ALAYGLISSPEGSTLKIFKNLRVCGDCHSVYKFASGILGRKIVLRDPYRFHQFSGGQCSC 904

Query: 607 NDFW 610
            D+W
Sbjct: 905 TDYW 908



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 112/438 (25%), Positives = 200/438 (45%), Gaps = 67/438 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H+ ++K G +      NTLI  Y      + A  + + M ++D +SW S++  Y Q 
Sbjct: 252 RGIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQD 311

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 + + +TM  + +   ++  F S + AC        GK +HA  +     ++ +V
Sbjct: 312 GNCLDALKLLATMFYMRR-GANYVTFTSALAACSDPEFATEGKILHALVIHVGLHENVIV 370

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LV +YAK GL   A+ VF ++  ++ V+W A++  +A S    +A++ F+       
Sbjct: 371 GNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKL------ 424

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC-ANFAVLELGKQIH 261
                                    MR EGV I + + +S+++GAC A   +LE G  IH
Sbjct: 425 -------------------------MREEGVPI-NYITISNVLGACLAPNDLLEHGMPIH 458

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             +I  G++S  ++ N+++ MYAKC D+ ++ +IF R+  K+  +W +++   A HG  E
Sbjct: 459 AFIILTGFQSDEYVQNSLITMYAKCGDLNSSNNIFDRLTSKNASAWNAMMAANAHHGHME 518

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF---------------KSMI 366
           E L    EM  AGV  +E +F   + A + + ++ +G++L                 + +
Sbjct: 519 EALKFLLEMRRAGVNVDEFSFSECLAAAAKLAILEEGQQLHGLAVKLGCDSNPFVASATM 578

Query: 367 EDYG---------------ITPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEP 408
           + YG               I  S   +  L    SR G  ++A+     M     +PD  
Sbjct: 579 DMYGKCGEIDDVLRIIPRPINRSRLSWNILTSSFSRHGFFEKAKETFHEMINLGVKPDHV 638

Query: 409 TWAALLSACKHHRNTEMG 426
           T+ +LLSAC H    E G
Sbjct: 639 TFVSLLSACSHGGMVEEG 656



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 196/430 (45%), Gaps = 39/430 (9%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  I+K+GL     +  +L+  YG   L   A  + +EM  ++ VSW +++ AY     
Sbjct: 52  VHGFIVKVGLLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGE 111

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P   ++I+  M + + +  +    +S++  C SL    LG QV    +      +  V +
Sbjct: 112 PSMVMNIYRRMRS-EGMSCNDNTMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVAN 170

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SL+ M+   G    A  VF  +   +++SW +M++AY R+G  K+++  F          
Sbjct: 171 SLISMFGYFGSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCKESLRCF---------- 220

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                S + +   EI++                   LS+++  C +   L+ G+ IH LV
Sbjct: 221 -----SWMFRVHKEINS-----------------TTLSTMLAGCGSVDNLKWGRGIHSLV 258

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           +  G+ S +  SN ++ MY+       A+ +F  M  KD++SW S++   AQ G   + L
Sbjct: 259 LKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQDGNCLDAL 318

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            L   M       N VTF   + ACS      +G K+  +++   G+  ++     L+ L
Sbjct: 319 KLLATMFYMRRGANYVTFTSALAACSDPEFATEG-KILHALVIHVGLHENVIVGNALVTL 377

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED-PSS 443
            ++SG + EA+ + + MP + D  TW AL+     H ++E           ++ E  P +
Sbjct: 378 YAKSGLMIEAKKVFQTMP-KRDGVTWNALIGG---HADSEEPDEALKAFKLMREEGVPIN 433

Query: 444 YILLSNVYAS 453
           YI +SNV  +
Sbjct: 434 YITISNVLGA 443



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 156/323 (48%), Gaps = 33/323 (10%)

Query: 27  AQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQ 86
             +IK GL     + N+LI  +G    V+ A ++   M + D +SW S++ AY +  L +
Sbjct: 155 GHVIKYGLETNVSVANSLISMFGYFGSVEEACYVFSGMDEHDTISWNSMIAAYIRNGLCK 214

Query: 87  KTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSL 146
           +++  FS M  + K + +    ++++  CGS+   + G+ +H+  +   +  +    ++L
Sbjct: 215 ESLRCFSWMFRVHK-EINSTTLSTMLAGCGSVDNLKWGRGIHSLVLKFGWNSNVCASNTL 273

Query: 147 VDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWT 206
           + MY+  G   +A  VF  +  K+ +SW +M++ YA+ G   DA+++             
Sbjct: 274 ITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQDGNCLDALKLLATM--------- 324

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
                          FY    MRR G + V     +S + AC++      GK +H LVI 
Sbjct: 325 ---------------FY----MRR-GANYV---TFTSALAACSDPEFATEGKILHALVIH 361

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
           +G    + + NA+V +YAK   +I AK +F  M ++D V+W ++I G A   + +E L  
Sbjct: 362 VGLHENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKA 421

Query: 327 YDEMVSAGVKPNEVTFVGLIYAC 349
           +  M   GV  N +T   ++ AC
Sbjct: 422 FKLMREEGVPINYITISNVLGAC 444



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 151/343 (44%), Gaps = 37/343 (10%)

Query: 76  LTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL-GKQVHACFVLS 134
           ++ + +A   ++++  F+ M     ++P     ASLV AC       + G QVH   V  
Sbjct: 1   MSGFVRAGSYRESMRFFNEMRDFG-VKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKV 59

Query: 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
               D  V +SLV +Y   GL  +A  VF  +  KN VSWTA++ AY   G     M I+
Sbjct: 60  GLLSDVFVGTSLVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIY 119

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
            +                               MR EG+   D   +SS++  C +    
Sbjct: 120 RR-------------------------------MRSEGMSCNDN-TMSSVISTCVSLENE 147

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
            LG Q+ G VI  G E+ + ++N+++ M+     +  A  +F  M   D +SW S+I   
Sbjct: 148 LLGYQVLGHVIKYGLETNVSVANSLISMFGYFGSVEEACYVFSGMDEHDTISWNSMIAAY 207

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
            ++G  +E+L  +  M     + N  T   ++  C  V  +  GR +  S++  +G   +
Sbjct: 208 IRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGCGSVDNLKWGRGI-HSLVLKFGWNSN 266

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417
           +     L+ + S +G  ++AE + + M  E D  +W +++ AC
Sbjct: 267 VCASNTLITMYSDAGRCEDAELVFQGM-VEKDMISWNSMM-AC 307


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  410 bits (1054), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/609 (35%), Positives = 343/609 (56%), Gaps = 58/609 (9%)

Query: 55  QYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA 114
           + A  L +++  RD +SW S+++ Y    L ++ + I+  M+ L  +  D     S++  
Sbjct: 202 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEIYKQMMYLG-IDVDLATIISVLVG 260

Query: 115 CGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSW 174
           C + G   LGK VH+  + S F       ++L+DMY+KCG  + A  VF+ +  +N VSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 175 TAMLSAYARSGRKKDAMEIFEQ------------------APVR---------------- 200
           T+M++ Y R GR   A+ + +Q                  A  R                
Sbjct: 321 TSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIKA 380

Query: 201 -----NLFLWTALVSGLVQ--SRNEIDAFYSFIEMRREGVDIV-----------DPLVLS 242
                NLF+  AL+    +  S +  ++ +S + ++    DI+           D   ++
Sbjct: 381 NNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVK----DIISWNTMIGELKPDSRTMA 436

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            I+ ACA+ + LE GK+IHG ++  GY S   ++NA+VD+Y KC  +  A+ +F  +  K
Sbjct: 437 CILPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSK 496

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           D+VSWT +I G   HG   E +A ++EM  AG++P+EV+F+ ++YACSH GL+ +G + F
Sbjct: 497 DLVSWTVMISGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFF 556

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
             M  D+ I P L+HY C++DLLSR+G+L +A   I+ +P  PD   W ALL  C+ + +
Sbjct: 557 YIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRIYHD 616

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
            E+  +VA  +  L+PE+   Y+LL+N+YA A  W+ V ++R+ +    ++K PG S+IE
Sbjct: 617 IELAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIE 676

Query: 483 FGKGSHIFYAG-ETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
                ++F +G  +SHP   +I  LL ++  +MK  GY P T   L + ++ +KE  L  
Sbjct: 677 IKGKVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCG 736

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSE+LA+A+GLL   P   +RV KNLRVCGDCH + K +S+ T+REIV+RD+ R+HHFK+
Sbjct: 737 HSEKLAMAFGLLALPPRKTVRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKN 796

Query: 602 GKCSCNDFW 610
           G CSC  FW
Sbjct: 797 GYCSCRGFW 805



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 175/361 (48%), Gaps = 35/361 (9%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
            ++S+++ C    +   GK+VH+    +    D+V+   LV +YA CG     R VFD++
Sbjct: 101 TYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTM 160

Query: 167 KLKNSVSWTAMLSAYARSG--------------------RKKDAMEIFEQAPVRNLFLWT 206
           + KN   W  M+S YA+ G                    R + A E+F++   R++  W 
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
           +++SG V +         + +M   G+D+    ++S +VG CAN   L LGK +H L I 
Sbjct: 221 SMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVG-CANSGTLSLGKAVHSLAIK 279

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
             +E  +  SN ++DMY+KC D+  A  +F +M  ++VVSWTS+I G  + G+++  + L
Sbjct: 280 STFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIRL 339

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
             +M   GVK + V    +++AC+  G +  G+ +    I+   +  +L     L+D+ +
Sbjct: 340 LQQMEKEGVKLDVVATTSILHACARSGSLDNGKDV-HDYIKANNMESNLFVCNALMDMYT 398

Query: 387 RSGHLDEAENLIKAM-------------PFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
           + G +D A ++   M               +PD  T A +L AC      E G  +  ++
Sbjct: 399 KCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACILPACASLSALERGKEIHGYI 458

Query: 434 L 434
           L
Sbjct: 459 L 459



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 123/294 (41%), Gaps = 51/294 (17%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA        K +H+  IK    +     NTL+D Y KC  +  A  + E+M +R+ VSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            S++  Y +       I +   M   + ++ D     S++ AC   G+   GK VH    
Sbjct: 321 TSMIAGYTRDGRSDGAIRLLQQM-EKEGVKLDVVATTSILHACARSGSLDNGKDVHDYIK 379

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAM--------------- 177
            +    +  V ++L+DMY KCG  + A +VF ++ +K+ +SW  M               
Sbjct: 380 ANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGELKPDSRTMACIL 439

Query: 178 -----LSAYA----------RSGRKKD-------------------AMEIFEQAPVRNLF 203
                LSA            R+G   D                   A  +F+  P ++L 
Sbjct: 440 PACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLV 499

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
            WT ++SG        +A  +F EMR  G++  D +   SI+ AC++  +LE G
Sbjct: 500 SWTVMISGYGMHGYGNEAIATFNEMRDAGIE-PDEVSFISILYACSHSGLLEQG 552



 Score = 55.8 bits (133), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 1/115 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K +H  I++ G      + N L+D Y KC ++  A  L + +P +D 
Sbjct: 439 LPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           VSW  +++ Y       + I+ F+ M     ++PD   F S++ AC   G    G
Sbjct: 499 VSWTVMISGYGMHGYGNEAIATFNEMRDAG-IEPDEVSFISILYACSHSGLLEQG 552


>gi|413934850|gb|AFW69401.1| hypothetical protein ZEAMMB73_719952 [Zea mays]
          Length = 742

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/569 (36%), Positives = 329/569 (57%), Gaps = 3/569 (0%)

Query: 43  TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQ 102
           T+I    +  L+  A  LL + P+R+ VSW S++  Y++A  P   +  F+ ML+ D + 
Sbjct: 176 TVIGGLVRWGLLDEARRLLVQAPERNVVSWTSLIAGYSRAGRPADAVYCFNCMLS-DGVA 234

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162
           PD       + AC  L    LG+ +H           D +  +L+DMYAKCG    A+AV
Sbjct: 235 PDEVAVIGALSACSKLKNLDLGRLLHLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAV 294

Query: 163 FDSI-KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           FD++ + +    W A++  Y + G    A  +F+Q   R++  + ++++G + S    DA
Sbjct: 295 FDAVGRGQKPEPWNAIIDGYCKLGHVDVARSLFDQMGARDVITFNSMITGYIHSGRLRDA 354

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F++MRR G+   D   + S++ ACA+   L  G+ +H  +     E  +++  A++D
Sbjct: 355 LQLFMQMRRHGMR-ADNFTVVSLLTACASLGALPHGRALHASIEQRIVEEDVYLGTALLD 413

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  +  A  +F RM  +DV +WT++I G A +G  ++ L  + +M   G +P  VT
Sbjct: 414 MYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFNGMGKDALESFCQMKRDGFQPTSVT 473

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           ++ ++ ACSH  L+ +GR  F  M   + + P ++HY C++DLL+RSG LDEA +L++ M
Sbjct: 474 YIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVEHYGCMIDLLARSGLLDEAMHLVQTM 533

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P +P+   W ++LSAC+ H+N ++    A HLL L PE+ + Y+ L N+Y  +  W    
Sbjct: 534 PMQPNAVIWGSILSACRVHKNIDLARHAAEHLLKLAPEEDAVYVQLYNIYIDSRQWADAK 593

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           +VR LM    VKK  GYS I      H F A + SHP   EI  ++ E+   +K  GY P
Sbjct: 594 RVRMLMEERGVKKTAGYSSITVAGQVHKFVANDQSHPWTLEIMAMMEEIACRLKSVGYSP 653

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
            TS +  D++++EKE+ L  HSE++A+A+GL+   P   + +VKNLRVC DCH  +K++S
Sbjct: 654 VTSRIAVDVDEEEKEQALLAHSEKIAIAFGLISLPPSLPIHIVKNLRVCEDCHSAIKLVS 713

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++  REI+VRD +R+HHF+DG CSCNDFW
Sbjct: 714 QLWNREIIVRDRSRFHHFRDGACSCNDFW 742



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 148/308 (48%), Gaps = 35/308 (11%)

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           +V + L+ MYA  GL ++AR  FD I  K++V W  ++    R G   +A  +  QAP R
Sbjct: 141 LVANPLIHMYASMGLTDDARRAFDEIPAKDAVVWATVIGGLVRWGLLDEARRLLVQAPER 200

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF--------A 252
           N+  WT+L++G  ++    DA Y F  M  +GV   D + +   + AC+           
Sbjct: 201 NVVSWTSLIAGYSRAGRPADAVYCFNCMLSDGV-APDEVAVIGALSACSKLKNLDLGRLL 259

Query: 253 VLELGKQ----IHGLVIAL--GYESCLFIS------------------NAIVDMYAKCSD 288
            L +G++       LV+AL   Y  C  I+                  NAI+D Y K   
Sbjct: 260 HLLVGQKRIRMTDNLVVALIDMYAKCGDIAQAQAVFDAVGRGQKPEPWNAIIDGYCKLGH 319

Query: 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
           +  A+ +F +M  +DV+++ S+I G    G+  + L L+ +M   G++ +  T V L+ A
Sbjct: 320 VDVARSLFDQMGARDVITFNSMITGYIHSGRLRDALQLFMQMRRHGMRADNFTVVSLLTA 379

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           C+ +G +  GR L  S IE   +   +   T LLD+  + G +DEA  +   M  E D  
Sbjct: 380 CASLGALPHGRALHAS-IEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMG-ERDVH 437

Query: 409 TWAALLSA 416
           TW A+++ 
Sbjct: 438 TWTAMIAG 445



 Score = 45.8 bits (107), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 54/252 (21%), Positives = 104/252 (41%), Gaps = 28/252 (11%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHA I +  + +   L   L+D Y KC  V  A  +   M +RD  +W +++      
Sbjct: 390 RALHASIEQRIVEEDVYLGTALLDMYMKCGRVDEATAVFHRMGERDVHTWTAMIAGLAFN 449

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK----QVHACFVLSPFCD 138
            + +  +  F  M   D  QP    + +++ AC        G+    ++ +   L P  +
Sbjct: 450 GMGKDALESFCQM-KRDGFQPTSVTYIAVLTACSHSSLLDEGRLHFNEMRSLHKLHPQVE 508

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKKD-----AME 192
                  ++D+ A+ GL + A  +  ++ ++ N+V W ++LSA  R  +  D     A  
Sbjct: 509 H---YGCMIDLLARSGLLDEAMHLVQTMPMQPNAVIWGSILSA-CRVHKNIDLARHAAEH 564

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           + + AP  +  ++  L +  + SR   DA    + M   GV               A ++
Sbjct: 565 LLKLAPEEDA-VYVQLYNIYIDSRQWADAKRVRMLMEERGVK------------KTAGYS 611

Query: 253 VLELGKQIHGLV 264
            + +  Q+H  V
Sbjct: 612 SITVAGQVHKFV 623


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 206/571 (36%), Positives = 330/571 (57%), Gaps = 37/571 (6%)

Query: 42   NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
            N+L+D Y KCD +     L +EMP+RD+VS+  I+ AY         + +F  M    KL
Sbjct: 473  NSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREM---QKL 529

Query: 102  QPDHFV--FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
              D  V  +A+++   GSL    +GKQ+HA  VL     +D++ ++L+DMY+KCG+ + A
Sbjct: 530  GFDRQVLPYATMLSVAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAA 589

Query: 160  RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
            ++ F +   K+++S                               WTAL++G VQ+    
Sbjct: 590  KSNFSNRSEKSAIS-------------------------------WTALITGYVQNGQHE 618

Query: 220  DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
            +A   F +MRR G+   D    SSI+ A ++ A++ LG+Q+H  +I  GY+S +F  + +
Sbjct: 619  EALQLFSDMRRAGLR-PDRATFSSIIKASSSLAMIGLGRQLHSYLIRSGYKSSVFSGSVL 677

Query: 280  VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
            VDMYAKC  +  A   F  M  ++ +SW ++I   A +G+A+  + +++ M+  G  P+ 
Sbjct: 678  VDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDS 737

Query: 340  VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
            VTF+ ++ ACSH GL  +  K F  M   Y I+P  +HY C++D L R G   + + ++ 
Sbjct: 738  VTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLV 797

Query: 400  AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
             MPF+ D   W ++L +C+ H N E+    A+ L  ++P D + Y++LSN+YA A  W+ 
Sbjct: 798  EMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWED 857

Query: 460  VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
             + V+K+M    V+KE GYS++E  +  + F + + + P+ DEI + L  L  EM ++GY
Sbjct: 858  AACVKKIMRDRGVRKESGYSWVEIKQKIYSFASNDLTSPMIDEIKDELDRLYKEMDKQGY 917

Query: 520  VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
             PD +  LH ++ + K   L +HSERLA+A+ L+ +  GT +R++KNL  C DCH V+KM
Sbjct: 918  KPDITCALHMVDHELKLESLKYHSERLAIAFALMNTPAGTPIRIMKNLTACLDCHAVIKM 977

Query: 580  ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            IS+I  R+I+VRD+ R+HHFKDG CSC D+W
Sbjct: 978  ISKIVNRDIIVRDSRRFHHFKDGVCSCGDYW 1008



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/429 (28%), Positives = 209/429 (48%), Gaps = 54/429 (12%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           TV +LH   IK GL  +  + NTL+DAY K  L+  A  +  EM  +D V++ +++   +
Sbjct: 367 TVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCS 426

Query: 81  QANLPQKTISIFSTM-LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
           +  L  + + +F+ M  A     P H +  S  ++              +  VL+ F   
Sbjct: 427 KEGLHTQALQLFAAMRRAGYSRHPLHLLQYSHSRS-------------RSTSVLNVF--- 470

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             V +SL+D Y+KC   ++ R +FD +  +++VS+  +++AYA                 
Sbjct: 471 --VNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYA----------------- 511

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                W    + +++          F EM++ G D    L  ++++    +   + +GKQ
Sbjct: 512 -----WNQCAATVLR---------LFREMQKLGFD-RQVLPYATMLSVAGSLPDVHIGKQ 556

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           IH  ++ LG  S   + NA++DMY+KC  + AAK  F     K  +SWT++I G  Q+GQ
Sbjct: 557 IHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQ 616

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
            EE L L+ +M  AG++P+  TF  +I A S + ++G GR+L   +I   G   S+   +
Sbjct: 617 HEEALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLGRQLHSYLIRS-GYKSSVFSGS 675

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
            L+D+ ++ G LDEA      MP E +  +W A++SA  H+   +   ++   +L     
Sbjct: 676 VLVDMYAKCGCLDEALRTFDEMP-ERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCG-F 733

Query: 440 DPSSYILLS 448
           +P S   LS
Sbjct: 734 NPDSVTFLS 742



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/260 (25%), Positives = 119/260 (45%), Gaps = 24/260 (9%)

Query: 157 NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
           + ARA+FD +  KN  S   +LSAY+ SG    A  +F  +P RN   WT ++     + 
Sbjct: 274 HRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAG 333

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
              DA   F  M  EGV I D + +++++    N     +   +H   I  G ++ +F+ 
Sbjct: 334 RTSDALSLFRAMLGEGV-IPDRVTVTTVL----NLPGCTV-PSLHPFAIKFGLDTHVFVC 387

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
           N ++D Y K   + AA+ +F  M  KD V++ ++++G ++ G   + L L+  M  AG  
Sbjct: 388 NTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYS 447

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
            + +  +   ++ S      +   +    + +            LLD  S+   LD+   
Sbjct: 448 RHPLHLLQYSHSRS------RSTSVLNVFVNN-----------SLLDFYSKCDCLDDMRR 490

Query: 397 LIKAMPFEPDEPTWAALLSA 416
           L   MP E D  ++  +++A
Sbjct: 491 LFDEMP-ERDNVSYNVIIAA 509



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 37/204 (18%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH+ +I+ G        + L+D Y KC  +  A    +EMP+R+ +SW ++++AY   
Sbjct: 656 RQLHSYLIRSGYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHY 715

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACG-------------------------- 116
              +  I +F  ML      PD   F S++ AC                           
Sbjct: 716 GEAKNAIKMFEGMLHCG-FNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKE 774

Query: 117 -------SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI--- 166
                  +LG      QV    V  PF  D ++ +S++      G    AR   D +   
Sbjct: 775 HYACVIDTLGRVGCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGM 834

Query: 167 KLKNSVSWTAMLSAYARSGRKKDA 190
           +  ++  +  + + YAR+G+ +DA
Sbjct: 835 EPTDATPYVILSNIYARAGQWEDA 858


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/601 (36%), Positives = 334/601 (55%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA  +     + +HA  ++ GL +   +   ++DAY KC  V+ A  + + MP R+ 
Sbjct: 126 LPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNS 185

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++  Y       + +++F  M+       D  V A+L +ACG LG     ++VH 
Sbjct: 186 VSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAAL-QACGELGYLDEVRRVHE 244

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V      +  V ++L+  YAKC   + A  VF+ +                  G KK 
Sbjct: 245 LLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNEL------------------GNKKT 286

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            +             W A++ G  Q+    DA   F  M+ E V   D   L S++ A A
Sbjct: 287 RIS------------WNAMILGFTQNECPEDAERLFARMQLENVR-PDSFTLVSVIPAVA 333

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           + +     + IHG  I    +  +++  A++DMY+KC  +  A+ +F   R + V++W +
Sbjct: 334 DISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNA 393

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G   HG  +  + L++EM   G  PNE TF+ ++ ACSH GLV +G+K F SM +DY
Sbjct: 394 MIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACSHAGLVDEGQKYFASMKKDY 453

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G+ P ++HY  ++DLL R+G LDEA + IK MP EP    + A+L ACK H+N E+    
Sbjct: 454 GLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELAEES 513

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  +  L PE+   ++LL+N+YA+A+MW+ V++VR  M    ++K PG+S I+     H 
Sbjct: 514 AQIIFELGPEEGVYHVLLANIYANASMWKDVARVRTAMEKKGLQKTPGWSIIQLKNEVHT 573

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           FY+G T+H    +I+  L +L  E+K  GYVPDT S+ HD+E   K + L  HSE+LA+A
Sbjct: 574 FYSGSTNHQHAKDIYARLAKLIEEIKDMGYVPDTDSI-HDVEDDVKAQLLNTHSEKLAIA 632

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           YGL+++ PGT +++ KNLRVC DCH   K+IS +T REI++RD  R+HHFKDGKCSC D+
Sbjct: 633 YGLIRTAPGTTIQIKKNLRVCNDCHNATKLISLLTGREIIMRDIQRFHHFKDGKCSCGDY 692

Query: 610 W 610
           W
Sbjct: 693 W 693



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 190/418 (45%), Gaps = 46/418 (11%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L++CA      T + +HAQ+   GL         L + Y KC     A  + + MP RD 
Sbjct: 23  LKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMPSRDR 82

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQ-PDHFVFASLVKACGSLGATRLGKQVH 128
           V+W +++  Y +  LP   +     M   +  + PD     S++ AC    A    ++VH
Sbjct: 83  VAWNAVVAGYARNGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACREVH 142

Query: 129 ACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           A F L    D+ V V ++++D Y KCG    ARAVFD + ++NSVSW AM+  YA +G  
Sbjct: 143 A-FALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNA 201

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
            +AM +F          W                      M +EGVD+ D  VL+++  A
Sbjct: 202 TEAMALF----------W---------------------RMVQEGVDVTDASVLAAL-QA 229

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVS 306
           C     L+  +++H L++ +G  S + ++NA++  YAKC     A  +F  +  +K  +S
Sbjct: 230 CGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKKTRIS 289

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W ++I+G  Q+   E+   L+  M    V+P+  T V +I A + +    + R      I
Sbjct: 290 WNAMILGFTQNECPEDAERLFARMQLENVRPDSFTLVSVIPAVADISDPLQAR-----WI 344

Query: 367 EDYGITPSLQH----YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
             Y I   L       T L+D+ S+ G +  A  L  +   +    TW A++     H
Sbjct: 345 HGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSAR-DRHVITWNAMIHGYGSH 401



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/443 (22%), Positives = 189/443 (42%), Gaps = 55/443 (12%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
            F +L+K C +      G+ VHA         + +  ++L +MY KC  P          
Sbjct: 18  TFTALLKLCAARADLATGRAVHAQLEARGLASESIASTALANMYFKCRRP---------- 67

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
                                 DA  +F++ P R+   W A+V+G  ++     A  + +
Sbjct: 68  ---------------------ADARRVFDRMPSRDRVAWNAVVAGYARNGLPSSAMEAVV 106

Query: 227 EMR-REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK 285
            M+  EG +  D + L S++ ACA+   L   +++H   +  G +  + +S A++D Y K
Sbjct: 107 RMQGEEGGERPDSVTLVSVLPACADARALHACREVHAFALRAGLDELVNVSTAVLDAYCK 166

Query: 286 CSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGL 345
           C  + AA+ +F  M  ++ VSW ++I G A +G A E +AL+  MV  GV   + + +  
Sbjct: 167 CGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFWRMVQEGVDVTDASVLAA 226

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP 405
           + AC  +G + + R++ + ++   G++ ++     L+   ++    D A  +   +  + 
Sbjct: 227 LQACGELGYLDEVRRVHELLVR-VGLSSNVSVTNALITTYAKCKRADLAAQVFNELGNKK 285

Query: 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA-------AMWQ 458
              +W A++     +   E   R+    + L+   P S+ L+S + A A       A W 
Sbjct: 286 TRISWNAMILGFTQNECPEDAERLFAR-MQLENVRPDSFTLVSVIPAVADISDPLQARWI 344

Query: 459 HVSKVRK--------LMSVMEVKKEPGYSYI-----EFGKGSHIFYAGETSHPLKDEIF- 504
           H   +R         L +++++  + G   I     +  +  H+       H      F 
Sbjct: 345 HGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHGFG 404

Query: 505 ELLTELDAEMKRRGYVPDTSSVL 527
           +   EL  EMK  G +P+ ++ L
Sbjct: 405 QAAVELFEEMKGTGSLPNETTFL 427



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 96/191 (50%), Gaps = 2/191 (1%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP- 65
           L  L+ C        V+ +H  ++++GL     + N LI  Y KC     A  +  E+  
Sbjct: 224 LAALQACGELGYLDEVRRVHELLVRVGLSSNVSVTNALITTYAKCKRADLAAQVFNELGN 283

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           ++  +SW +++  + Q   P+    +F+ M  L+ ++PD F   S++ A   +      +
Sbjct: 284 KKTRISWNAMILGFTQNECPEDAERLFARM-QLENVRPDSFTLVSVIPAVADISDPLQAR 342

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            +H   +      D  V ++L+DMY+KCG  + AR +FDS + ++ ++W AM+  Y   G
Sbjct: 343 WIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSARDRHVITWNAMIHGYGSHG 402

Query: 186 RKKDAMEIFEQ 196
             + A+E+FE+
Sbjct: 403 FGQAAVELFEE 413


>gi|79456853|ref|NP_191848.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75116883|sp|Q683I9.1|PP295_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62890
 gi|51968398|dbj|BAD42891.1| putative protein [Arabidopsis thaliana]
 gi|332646886|gb|AEE80407.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 573

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/548 (38%), Positives = 325/548 (59%), Gaps = 10/548 (1%)

Query: 72  WASILTA-YNQANLPQK--TISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
           W  I+ A  +  + PQ+   IS++  M    ++ PD   F  L+ +  +     LG++ H
Sbjct: 27  WNIIIRAIVHNVSSPQRHSPISVYLRMRN-HRVSPDFHTFPFLLPSFHNPLHLPLGQRTH 85

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           A  +L     D  V++SL++MY+ CG   +A+ VFD    K+  +W ++++AYA++G   
Sbjct: 86  AQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLID 145

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR----REGVDIVDPLVLSSI 244
           DA ++F++ P RN+  W+ L++G V      +A   F EM+     E     +   +S++
Sbjct: 146 DARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTMSTV 205

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKD 303
           + AC     LE GK +H  +     E  + +  A++DMYAKC  +  AK +F  +  +KD
Sbjct: 206 LSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKD 265

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSA-GVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           V +++++I   A +G  +E   L+ EM ++  + PN VTFVG++ AC H GL+ +G+  F
Sbjct: 266 VKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYF 325

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
           K MIE++GITPS+QHY C++DL  RSG + EAE+ I +MP EPD   W +LLS  +   +
Sbjct: 326 KMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLGD 385

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
            +        L+ L P +  +Y+LLSNVYA    W  V  +R  M V  + K PG SY+E
Sbjct: 386 IKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVE 445

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWH 542
                H F  G+ S    + I+ +L E+   ++  GYV DT  VL D+ +K+KE  L +H
Sbjct: 446 VEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYH 505

Query: 543 SERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           SE+LA+A+ L+K+ PGT +R++KNLR+CGDCH+VMKMIS++  REIVVRD  R+HHF+DG
Sbjct: 506 SEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDG 565

Query: 603 KCSCNDFW 610
            CSC DFW
Sbjct: 566 SCSCRDFW 573



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 131/290 (45%), Gaps = 44/290 (15%)

Query: 39  PLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
           P  N++++AY K  L+  A  L +EMP+R+ +SW+ ++  Y      ++ + +F  M  L
Sbjct: 129 PAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREM-QL 187

Query: 99  DK-----LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC 153
            K     ++P+ F  ++++ ACG LGA   GK VHA         D V+ ++L+DMYAKC
Sbjct: 188 PKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKC 247

Query: 154 GLPNNARAVFDSIKLKNSV-SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGL 212
           G    A+ VF+++  K  V +++AM+   A  G   +  ++F +                
Sbjct: 248 GSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTS------------ 295

Query: 213 VQSRNEIDAFYSFIEMRREGVDIVDP--LVLSSIVGACANFAVLELGKQIHGLVI-ALGY 269
                                D ++P  +    I+GAC +  ++  GK    ++I   G 
Sbjct: 296 ---------------------DNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGI 334

Query: 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHG 318
              +     +VD+Y +   I  A+     M    DV+ W S++ G+   G
Sbjct: 335 TPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLG 384



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 74/175 (42%), Gaps = 5/175 (2%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM-PQRD 68
           L  C R       K +HA I K  +     L   LID Y KC  ++ A  +   +  ++D
Sbjct: 206 LSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGSKKD 265

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
             ++++++       L  +   +FS M   D + P+   F  ++ AC   G    GK   
Sbjct: 266 VKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGKSYF 325

Query: 129 ACFVLSPFCDDDVVK--SSLVDMYAKCGLPNNARAVFDSIKLKNSV-SWTAMLSA 180
              ++  F     ++    +VD+Y + GL   A +   S+ ++  V  W ++LS 
Sbjct: 326 K-MMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSG 379


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  410 bits (1053), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 209/588 (35%), Positives = 341/588 (57%), Gaps = 34/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA++I         L   L+  Y +C  +  A ++L+ MP+R  VSW ++++ Y+Q 
Sbjct: 30  RQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQT 89

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + +F  ML    + P+ +  A+++ +C    +   GKQVH+  V + F     V
Sbjct: 90  ERHVEALDLFIKMLRAGCI-PNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFV 148

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            SSL+DMYAK      AR VFD++  ++ VS TA++S YA+ G  ++A+++F Q      
Sbjct: 149 GSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQ------ 202

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                               YS      EG+   + +  +++V A +  A L+ GKQ+H 
Sbjct: 203 -------------------LYS------EGMQ-CNHVTFTTLVTALSGLASLDYGKQVHA 236

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L++       + + N+++DMY+KC  ++ ++ +F  M  + VVSW ++++G  +HG   E
Sbjct: 237 LILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHE 296

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            ++L+ ++    VKP+ VT + ++  CSH GLV +G  +F +++++        HY C++
Sbjct: 297 VISLFKDL-HKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCII 355

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL RSG L++A NLI+ MPFE     W +LL AC+ H N  +G  VA  LL ++PE+  
Sbjct: 356 DLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAG 415

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y++LSN+YA+A MW+ V KVRKLM    V KEPG S+I   K  H F++ E  HP K +
Sbjct: 416 NYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKD 475

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I   + E+  ++K  G+VPD S VLHD++ ++KER L  HSE+LA+ +GL+ + PG  +R
Sbjct: 476 INAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIR 535

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V+KNLR+C DCH   K +S++ +REI +RD  R+H    G C+C D+W
Sbjct: 536 VMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW 583



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 102/186 (54%), Gaps = 1/186 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C+  Q     K +H+ ++K     +  + ++L+D Y K + +Q A  + + +P+RD 
Sbjct: 118 LTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDV 177

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS  +I++ Y Q  L ++ + +F  + + + +Q +H  F +LV A   L +   GKQVHA
Sbjct: 178 VSCTAIISGYAQKGLDEEALDLFRQLYS-EGMQCNHVTFTTLVTALSGLASLDYGKQVHA 236

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +         +++SL+DMY+KCG    +R VFD++  ++ VSW AML  Y R G   +
Sbjct: 237 LILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHE 296

Query: 190 AMEIFE 195
            + +F+
Sbjct: 297 VISLFK 302



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 10/176 (5%)

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + AC     L  G+Q+H  +I   Y   +F+   +V MY +C  +  A+++  RM  + V
Sbjct: 17  ITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSV 76

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK---- 360
           VSWT++I G +Q  +  E L L+ +M+ AG  PNE T   ++ +CS    + +G++    
Sbjct: 77  VSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSL 136

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           L K+  E +    S      LLD+ ++S ++ EA  +   +P E D  +  A++S 
Sbjct: 137 LVKTNFESHMFVGS-----SLLDMYAKSENIQEARRVFDTLP-ERDVVSCTAIISG 186


>gi|356543252|ref|XP_003540076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 934

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/593 (37%), Positives = 330/593 (55%), Gaps = 38/593 (6%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           T+K +HA +I LGLH    + N L+  YGK   +  A  + + MP RD V+W +++  + 
Sbjct: 377 TLKIVHAFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHA 436

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL---GKQVHACFVLSPFC 137
               P   I  F+ +L  + +  ++    +L+ A   L    L   G  +HA  V++ F 
Sbjct: 437 DNKEPNAAIEAFN-LLREEGVPVNYITIVNLLSA--FLSPDDLLDHGMPIHAHIVVAGFE 493

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            +  V+SSL+ MYA+CG  N +  +FD +  KNS +W A+LSA A  G  ++A+++    
Sbjct: 494 LETFVQSSLITMYAQCGDLNTSNYIFDVLANKNSSTWNAILSANAHYGPGEEALKLI--- 550

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
                                       I+MR +G+ + D    S       N  +L+ G
Sbjct: 551 ----------------------------IKMRNDGIHL-DQFSFSVAHAIIGNLTLLDEG 581

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           +Q+H L+I  G+ES  ++ NA +DMY KC +I     I  + R +   SW  +I   A+H
Sbjct: 582 QQLHSLIIKHGFESNDYVLNATMDMYGKCGEIDDVFRILPQPRSRSQRSWNILISALARH 641

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G  ++    + EM+  G++P+ VTFV L+ ACSH GLV +G   F SM   +G+   ++H
Sbjct: 642 GFFQQAREAFHEMLDLGLRPDHVTFVSLLSACSHGGLVDEGLAYFSSMSTKFGVPTGIEH 701

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
             C++DLL R+G L EAEN I  MP  P +  W +LL+ACK H N E+  + A+ L  L 
Sbjct: 702 CVCIIDLLGRAGKLTEAENFINKMPVPPTDLVWRSLLAACKIHGNLELARKAADRLFELD 761

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
             D S+Y+L SNV AS   W+ V  VRK M    +KK+P  S+++       F  G+  H
Sbjct: 762 SSDDSAYVLYSNVCASTRRWRDVENVRKQMESHNIKKKPACSWVKLKNQVTTFGMGDQYH 821

Query: 498 PLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVP 557
           P   EI+  L EL   ++  GY+PDTS  L D ++++KE  L+ HSER+A+A+GL+ S  
Sbjct: 822 PQNAEIYAKLEELKKIIREAGYMPDTSYSLQDTDEEQKEHNLWNHSERIALAFGLINSSE 881

Query: 558 GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           G+ LR+ KNLRVCGDCH V KM+S+I  R+I++RDA R+HHF  GKCSC+D+W
Sbjct: 882 GSPLRIFKNLRVCGDCHSVFKMVSQIIGRKIILRDAYRFHHFSSGKCSCSDYW 934



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 174/370 (47%), Gaps = 36/370 (9%)

Query: 48  YGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV 107
           Y K   +++A H+ ++MP+R+  SW ++++ + +    QK +  F  ML    ++P  +V
Sbjct: 2   YSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLE-HGVRPSSYV 60

Query: 108 FASLVKACGSLGATRLGK-QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
            ASLV AC   G    G  QVHA  +      D  V +SL+  Y   G       VF  I
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
           +  N VSWT+++  YA +G  K+ M ++ +                              
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRR------------------------------ 150

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            +RR+GV   +   +++++ +C       LG Q+ G VI  G ++ + ++N+++ M+  C
Sbjct: 151 -LRRDGV-YCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSVANSLISMFGNC 208

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             I  A  +F  M+ +D +SW SII  +  +G  E++L  + +M     K + +T   L+
Sbjct: 209 DSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQMRYTHAKTDYITISALL 268

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
             C     +  GR L   M+   G+  ++     LL + S++G  ++AE +   M  E D
Sbjct: 269 PVCGSAQNLRWGRGL-HGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMR-ERD 326

Query: 407 EPTWAALLSA 416
             +W +++++
Sbjct: 327 LISWNSMMAS 336



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/429 (24%), Positives = 195/429 (45%), Gaps = 40/429 (9%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA +IK GL     +  +L+  YG    V     + +E+ + + VSW S++  Y     
Sbjct: 81  VHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEIEEPNIVSWTSLMVGYAYNGC 140

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            ++ +S++   L  D +  +    A+++++CG L    LG QV    + S       V +
Sbjct: 141 VKEVMSVYRR-LRRDGVYCNENAMATVIRSCGVLVDKMLGYQVLGSVIKSGLDTTVSVAN 199

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SL+ M+  C     A  VFD +K ++++SW ++++A   +G  + ++E F Q        
Sbjct: 200 SLISMFGNCDSIEEASCVFDDMKERDTISWNSIITASVHNGHCEKSLEYFSQ-------- 251

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                                  MR       D + +S+++  C +   L  G+ +HG+V
Sbjct: 252 -----------------------MRYTHAK-TDYITISALLPVCGSAQNLRWGRGLHGMV 287

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           +  G ES + + N+++ MY++      A+ +F +MR +D++SW S++     +G     L
Sbjct: 288 VKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDLISWNSMMASHVDNGNYPRAL 347

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            L  EM+      N VTF   + AC ++  +    K+  + +   G+  +L     L+ +
Sbjct: 348 ELLIEMLQTRKATNYVTFTTALSACYNLETL----KIVHAFVILLGLHHNLIIGNALVTM 403

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
             + G +  A+ + K MP + DE TW AL+    H  N E    +    L  +   P +Y
Sbjct: 404 YGKFGSMAAAQRVCKIMP-DRDEVTWNALIGG--HADNKEPNAAIEAFNLLREEGVPVNY 460

Query: 445 ILLSNVYAS 453
           I + N+ ++
Sbjct: 461 ITIVNLLSA 469



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/446 (23%), Positives = 201/446 (45%), Gaps = 49/446 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VC   Q     + LH  ++K GL     + N+L+  Y +    + A  +  +M +RD 
Sbjct: 268 LPVCGSAQNLRWGRGLHGMVVKSGLESNVCVCNSLLSMYSQAGKSEDAEFVFHKMRERDL 327

Query: 70  VSWASILTAY-NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
           +SW S++ ++ +  N P + + +   ML   K   ++  F + + AC +L   ++   VH
Sbjct: 328 ISWNSMMASHVDNGNYP-RALELLIEMLQTRK-ATNYVTFTTALSACYNLETLKI---VH 382

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           A  +L     + ++ ++LV MY K G    A+ V   +  ++ V+W A++  +A +    
Sbjct: 383 AFVILLGLHHNLIIGNALVTMYGKFGSMAAAQRVCKIMPDRDEVTWNALIGGHADNKEPN 442

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            A+E F      NL                         +R EGV    P+   +IV   
Sbjct: 443 AAIEAF------NL-------------------------LREEGV----PVNYITIVNLL 467

Query: 249 ANFA----VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + F     +L+ G  IH  ++  G+E   F+ ++++ MYA+C D+  +  IF  +  K+ 
Sbjct: 468 SAFLSPDDLLDHGMPIHAHIVVAGFELETFVQSSLITMYAQCGDLNTSNYIFDVLANKNS 527

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
            +W +I+   A +G  EE L L  +M + G+  ++ +F        ++ L+ +G++L  S
Sbjct: 528 STWNAILSANAHYGPGEEALKLIIKMRNDGIHLDQFSFSVAHAIIGNLTLLDEGQQL-HS 586

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           +I  +G   +       +D+  + G +D+   ++   P    + +W  L+SA   H   +
Sbjct: 587 LIIKHGFESNDYVLNATMDMYGKCGEIDDVFRIL-PQPRSRSQRSWNILISALARHGFFQ 645

Query: 425 MGTRVANHL--LSLKPEDPSSYILLS 448
                 + +  L L+P+  +   LLS
Sbjct: 646 QAREAFHEMLDLGLRPDHVTFVSLLS 671



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 116/247 (46%), Gaps = 8/247 (3%)

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           Y++ G  + A  +F++ P RN   W  L+SG V+      A   F  M   GV      V
Sbjct: 2   YSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVR-PSSYV 60

Query: 241 LSSIVGACANFAVLELGK-QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
            +S+V AC     +  G  Q+H  VI  G    +F+  +++  Y     +     +F  +
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK-- 357
              ++VSWTS++VG A +G  +E +++Y  +   GV  NE     +I +C    LV K  
Sbjct: 121 EEPNIVSWTSLMVGYAYNGCVKEVMSVYRRLRRDGVYCNENAMATVIRSCG--VLVDKML 178

Query: 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417
           G ++  S+I+  G+  ++     L+ +      ++EA  +   M  E D  +W ++++A 
Sbjct: 179 GYQVLGSVIKS-GLDTTVSVANSLISMFGNCDSIEEASCVFDDMK-ERDTISWNSIITAS 236

Query: 418 KHHRNTE 424
            H+ + E
Sbjct: 237 VHNGHCE 243



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 1/133 (0%)

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY+K   I  A+ +F +M  ++  SW +++ G  + G  ++ +  +  M+  GV+P+   
Sbjct: 1   MYSKFGSIEHAQHVFDKMPERNEASWNNLMSGFVRVGWYQKAMQFFCHMLEHGVRPSSYV 60

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
              L+ AC   G + +G     + +   G+   +   T LL      G + E + + K +
Sbjct: 61  AASLVTACDRSGCMTEGAFQVHAHVIKCGLACDVFVGTSLLHFYGTFGWVAEVDMVFKEI 120

Query: 402 PFEPDEPTWAALL 414
             EP+  +W +L+
Sbjct: 121 E-EPNIVSWTSLM 132


>gi|357111691|ref|XP_003557645.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Brachypodium distachyon]
          Length = 598

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/548 (38%), Positives = 307/548 (56%), Gaps = 35/548 (6%)

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           +P  D  S  ++L  +  +  P+  +++    LA     PD   +  L++AC  L A R 
Sbjct: 85  LPSPDPFSLNTVLRIFASSARPRVALALHRRHLA----PPDTHTYPPLLQACARLLALRY 140

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G+ +HA    +       VK+SLV +Y  CGL  +A  VFD I                 
Sbjct: 141 GEGLHAEACKNGLVSLVFVKNSLVHLYGACGLFESAHRVFDEIP---------------- 184

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
                         P RNL  W ++++G   +    +    F EM  E     D   + S
Sbjct: 185 -------------PPERNLVSWNSVLNGFAANGRPNEVLTVFREML-EVEFAPDGFTVVS 230

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RK 302
           ++ ACA   VL LG+++H  V  +G        NA++D+YAKC  +  A+ +FG M   +
Sbjct: 231 VLTACAEIGVLALGRRVHVFVAKVGLVGNAHAGNALIDLYAKCGGVDDARKMFGEMGVGR 290

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
            VVSWTS+IVG A +G   + L L+  M    + P E+T VG++YACSH GLV  G + F
Sbjct: 291 TVVSWTSLIVGLAVNGFGMDALQLFSMMEREKLMPTEITMVGVLYACSHCGLVDDGFRYF 350

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
             M  +YGITP ++H  C++DLL R+G ++EA N I  MP EP+   W  LL AC  H+ 
Sbjct: 351 DQMKAEYGITPRIEHLGCMVDLLGRAGRVEEAHNYITTMPLEPNAVVWRTLLGACAMHKK 410

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
            E+G      L+ L P     Y+LLSN+YA    W  V  +RK M    V+K PG+S +E
Sbjct: 411 LEIGEAAWARLVELDPGHSGDYVLLSNLYAGVGRWADVHVLRKTMVTHGVRKNPGHSLVE 470

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWH 542
                + F  G+ SHP  D+I+E+L ++   ++R+GY+P TS+VL D+E +EKE  L +H
Sbjct: 471 LRNSVYEFVMGDRSHPETDQIYEMLGDIAERLRRQGYIPHTSNVLADIEDEEKESALNYH 530

Query: 543 SERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           SERLA+A+ LLKS+PGT +R+VKNLRVCGDCH+ +K+IS++  REI+VRD +R+HHFK G
Sbjct: 531 SERLAIAFALLKSLPGTPIRIVKNLRVCGDCHMAIKLISKVYDREIIVRDRSRFHHFKGG 590

Query: 603 KCSCNDFW 610
            CSC D+W
Sbjct: 591 ACSCKDYW 598


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/590 (35%), Positives = 341/590 (57%), Gaps = 35/590 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA +IK        L   LI  Y KC  +  A  +L+EMP+R+ VSW ++++ Y+Q 
Sbjct: 30  QRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQR 89

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + +F  ML +    P+ F FA+++ +C S    +LG+Q+H+  + + F     V
Sbjct: 90  GYASEALHLFVEML-MSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFV 148

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            SSL+DMYAK                               +G+  +A  +F+  P R++
Sbjct: 149 GSSLLDMYAK-------------------------------AGKICEARRVFDGLPERDV 177

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
              TA++SG  Q   + +A   F  ++REG+   + +  +S++ A +  A L+ G+Q+H 
Sbjct: 178 VSCTAIISGYAQLGLDEEALDLFRRLQREGMR-SNYVTYASVLTALSGLAALDHGRQVHS 236

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            V+       + + N+++DMY+KC  +  ++ IF  M  + V+SW +++VG ++HG   E
Sbjct: 237 HVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGRE 296

Query: 323 TLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI-EDYGITPSLQHYTC 380
            + L+  M     VKP+ VTF+ ++  CSH G+  +G ++F  M+ +  G  P ++HY C
Sbjct: 297 AVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGC 356

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DL  R+G ++EA   IK MPFEP    W +LL AC+ H+N  +G  VA  LL ++ E+
Sbjct: 357 VVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESEN 416

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
             +Y++LSN+YASA  W  V  VR+LM    V KEPG S+IE  +  H F+A + SHP K
Sbjct: 417 AGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRK 476

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
           +E+F  + EL  ++K  GYVP+ S VL+D++ ++KE+ L  HSE+LA+A+GL+ +  GT 
Sbjct: 477 EEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTP 536

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +R++KNLR+C DCH   K +SR+  RE+ +RD  R+HH   G CSC D+W
Sbjct: 537 VRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 586



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 93/174 (53%), Gaps = 2/174 (1%)

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           S++  C +   +  G+++H  +I   YE  +++   ++ +Y KC  +  A+ +   M  +
Sbjct: 15  SVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPER 74

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           +VVSWT++I G +Q G A E L L+ EM+ +G  PNE TF  ++ +C+       GR++ 
Sbjct: 75  NVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFATVLTSCTSSSGFQLGRQI- 133

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            S++        +   + LLD+ +++G + EA  +   +P E D  +  A++S 
Sbjct: 134 HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP-ERDVVSCTAIISG 186


>gi|147780607|emb|CAN69113.1| hypothetical protein VITISV_031840 [Vitis vinifera]
          Length = 714

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 213/586 (36%), Positives = 327/586 (55%), Gaps = 32/586 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA++IK   +  G + + L+  Y K    + A  L +EMP RD VSW S+++  +    
Sbjct: 161 IHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRGY 220

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
               ++ F  M      QP+     S+V AC  +GA   GK +H   V         V +
Sbjct: 221 LGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEGKSLHGVVVKLGMSGKAKVVN 280

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SL++MY K G  + A  +F+ + +++ VSW +M+  +  +G  +  M++F      NL  
Sbjct: 281 SLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLF------NL-- 332

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                                  M+R G++  D   + +++ AC +  +    + IH  +
Sbjct: 333 -----------------------MKRAGIN-PDQATMVALLRACTDTGLGRQAESIHAYI 368

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
              G+ + + I+ A++++YAK   + A++DIF  ++ +D ++WT+++ G A H    E +
Sbjct: 369 HRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAI 428

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            L+D MV  GV+ + VTF  L+ ACSH GLV +G+K F+ M E Y + P L HY+C++DL
Sbjct: 429 KLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVDL 488

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
           L RSG L++A  LIK+MP EP    W ALL AC+ + N E+G  VA  LLSL P D  +Y
Sbjct: 489 LGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRNY 548

Query: 445 ILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIF 504
           I+LSN+Y++A +W+  SKVR LM    + + PG S+IE G   H F  G+  HP  DEI 
Sbjct: 549 IMLSNIYSAAGLWRXASKVRXLMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEIH 608

Query: 505 ELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVV 564
             L EL  ++   G  P T  VLHD++++ K   +  HSE+LA+A+GLL +  G  L + 
Sbjct: 609 TKLEELIRKIXEAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLIIT 668

Query: 565 KNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           KNLR+CGDCH   K  S + KR I++RD+ R+HHF DG CSC D+W
Sbjct: 669 KNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 714



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 163/347 (46%), Gaps = 36/347 (10%)

Query: 76  LTAY-NQANLPQKT-ISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           LT++ N +N   +T +++F   L    L  D  V  SLV A  S  +      +HA  + 
Sbjct: 109 LTSFPNSSNDSTRTKVAVFLGKLHNSSLLADSIV-QSLVFAISSCTSVSYCSAIHARVIK 167

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
           S    D  +   LV MY K G   +A+ +FD +  ++ VSW +++S  +  G        
Sbjct: 168 SLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNRDLVSWNSLMSGLSGRG-------- 219

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
                    +L   L               +F  MR E     + + L S+V ACA    
Sbjct: 220 ---------YLGACL--------------NAFCRMRTESGRQPNEVTLLSVVSACAXMGA 256

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L+ GK +HG+V+ LG      + N++++MY K   + AA  +F  M  + +VSW S++V 
Sbjct: 257 LDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVI 316

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
              +G AE+ + L++ M  AG+ P++ T V L+ AC+  GL G+  +   + I   G   
Sbjct: 317 HNHNGYAEKGMDLFNLMKRAGINPDQATMVALLRACTDTGL-GRQAESIHAYIHRCGFNA 375

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            +   T LL+L ++ G L+ +E++ + +  + D   W A+L+    H
Sbjct: 376 DIIIATALLNLYAKLGRLNASEDIFEEIK-DRDTIAWTAMLAGYAVH 421



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 121/237 (51%), Gaps = 33/237 (13%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K+LH  ++KLG+     + N+LI+ YGK   +  A  L EEMP R  VSW S++  +N  
Sbjct: 261 KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHN 320

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +K + +F+ M     + PD     +L++AC   G  R  + +HA      F  D ++
Sbjct: 321 GYAEKGMDLFNLM-KRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIII 379

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+++YAK G  N +  +F+ IK +++++WTAML+ YA     ++A+++F+       
Sbjct: 380 ATALLNLYAKLGRLNASEDIFEEIKDRDTIAWTAMLAGYAVHACGREAIKLFDL------ 433

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                    M +EGV+ VD +  + ++ AC++  ++E GK+
Sbjct: 434 -------------------------MVKEGVE-VDHVTFTHLLSACSHSGLVEEGKK 464



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 94/193 (48%), Gaps = 3/193 (1%)

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
           ++ S+V A ++   +     IH  VI     S  FI + +V MY K      A+ +F  M
Sbjct: 141 IVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEM 200

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKG 358
             +D+VSW S++ G +  G     L  +  M   +G +PNEVT + ++ AC+ +G + +G
Sbjct: 201 PNRDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACAXMGALDEG 260

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
           + L   +++  G++   +    L+++  + G LD A  L + MP      +W +++    
Sbjct: 261 KSLHGVVVK-LGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSMVVIHN 318

Query: 419 HHRNTEMGTRVAN 431
           H+   E G  + N
Sbjct: 319 HNGYAEKGMDLFN 331



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 9/192 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C    +    +++HA I + G +    +   L++ Y K   +  +  + EE+  RD 
Sbjct: 349 LRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDT 408

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ--- 126
           ++W ++L  Y      ++ I +F  M+  + ++ DH  F  L+ AC   G    GK+   
Sbjct: 409 IAWTAMLAGYAVHACGREAIKLFDLMVK-EGVEVDHVTFTHLLSACSHSGLVEEGKKYFE 467

Query: 127 -VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARS 184
            +   + + P  D     S +VD+  + G   +A  +  S+ ++ S   W A+L A    
Sbjct: 468 IMSEVYRVEPRLDH---YSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVY 524

Query: 185 GRKKDAMEIFEQ 196
           G  +   E+ EQ
Sbjct: 525 GNVELGKEVAEQ 536


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  409 bits (1052), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/578 (36%), Positives = 335/578 (57%), Gaps = 40/578 (6%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L  TL+  Y + + +  A    + +   D VSW ++  AY Q + P++ + +F  ML L+
Sbjct: 257 LGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREALVLFERML-LE 315

Query: 100 KLQPDHFVFASLVKACGSL---GATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP 156
            ++P    F + + AC +     A+ +GK++ +    +    D  V ++ ++MYAKCG  
Sbjct: 316 GVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSL 375

Query: 157 NNARAVFDSIK--LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
            +ARAVF+ I    ++ ++W +ML+AY   G  K+A E+F+                   
Sbjct: 376 ADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQA------------------ 417

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF 274
                        M  E +   + +   +++ A  +   +  G++IH  V++ G+ES   
Sbjct: 418 -------------MEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTV 464

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRM--RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           I NA+++MYAKC  +  A+ IF +    ++DV++WTS++ G AQ+GQAE  L L+  M  
Sbjct: 465 IQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWTMQQ 524

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
            GV+PN +TF+  + AC+H G + +G +L   M  D+GI P+ +H++C++DLL R G LD
Sbjct: 525 QGVRPNHITFISALTACNHGGKLEQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCGRLD 584

Query: 393 EAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           EAE L++    + D  TW ALL ACK+ +  E G R A  ++ L PE  SSYI+L+++YA
Sbjct: 585 EAEKLLERTS-QADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYA 643

Query: 453 SAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDA 512
           +A  W   + +RK M    ++ +PG S +E  +  H F AG+ SHP  +EI+  L  L  
Sbjct: 644 AAGRWNEAATIRKTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHW 703

Query: 513 EMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGD 572
            +K  GYV DT  VLHD+ Q+ KER L  HSE+LA+A+GL+ +  G+ LRV+KNLRVC D
Sbjct: 704 SIKAAGYVADTGLVLHDVSQEHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSD 763

Query: 573 CHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           CH   K+IS++T R+I++RD++RYHHF  G CSC D+W
Sbjct: 764 CHTATKLISKVTGRDILMRDSSRYHHFTSGTCSCGDYW 801



 Score =  125 bits (313), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 190/416 (45%), Gaps = 48/416 (11%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL----EEMPQRDHVSWASILT 77
           V+ +H +I+  G+ +   +   L+D+YGK   +  A  +     +E P    V+ +++++
Sbjct: 133 VRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAMIS 192

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
           A  Q   PQ+++ +F  M  L+  +P      S++ AC  L    +G      FVL    
Sbjct: 193 ACWQNGWPQESLRLFYAM-NLEGTKPSGVTLVSVLNACSMLP---VGSAT--AFVLEQAM 246

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
           +  VV ++                       +++V  T +L+ YARS     A   F+  
Sbjct: 247 E--VVSAT-----------------------RDNVLGTTLLTTYARSNDLSRARATFDAI 281

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG--ACANF---A 252
              ++  W A+ +  +Q     +A   F  M  EG   V P V + I    ACA +    
Sbjct: 282 QSPDVVSWNAMAAAYLQHHRPREALVLFERMLLEG---VRPSVATFITALTACAAYPPQT 338

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR--RKDVVSWTSI 310
              +GK+I  L+   G E    ++NA ++MYAKC  +  A+ +F R+   R+D ++W S+
Sbjct: 339 ASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSM 398

Query: 311 IVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +     HG  +E   L+  M +   VKPN+VTFV ++ A +    + +GR++   ++ + 
Sbjct: 399 LAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSN- 457

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLI-KAMPFEPDEPTWAALLSACKHHRNTE 424
           G          LL++ ++ G LD+A+ +  K+   + D   W +L++    +   E
Sbjct: 458 GFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAE 513



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 157/337 (46%), Gaps = 46/337 (13%)

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           +++P+     +LV AC  LG    G+++H+      F ++ V+ ++L+ MY+KCG   +A
Sbjct: 2   EVRPNCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDA 61

Query: 160 RAVFDSI---KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
           +  FD +     ++ V+W AM+SA+ R+G  ++A+++F                      
Sbjct: 62  KQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFR--------------------- 100

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG--KQIHGLVIALGYESCLF 274
                     +M  +G    + +   S++ +C    +L L   + IHG ++  G E   F
Sbjct: 101 ----------DMDHDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAF 150

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA------QHGQAEETLALYD 328
           +  A+VD Y K   +  A ++F  +R+ D    TS++  +A      Q+G  +E+L L+ 
Sbjct: 151 VRTALVDSYGKLGSLDDAWEVF--LRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFY 208

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
            M   G KP+ VT V ++ ACS + +      + +  +E    T      T LL   +RS
Sbjct: 209 AMNLEGTKPSGVTLVSVLNACSMLPVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARS 268

Query: 389 GHLDEAENLIKAMPFEPDEPTWAALLSA-CKHHRNTE 424
             L  A     A+   PD  +W A+ +A  +HHR  E
Sbjct: 269 NDLSRARATFDAIQ-SPDVVSWNAMAAAYLQHHRPRE 304



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 161/323 (49%), Gaps = 52/323 (16%)

Query: 3   ISHYLHRLRVCARH--QIALTV-KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHH 59
           ++ ++  L  CA +  Q A  + K + + + + GL     + N  ++ Y KC  +  A  
Sbjct: 321 VATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARA 380

Query: 60  LLEEMP--QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGS 117
           + E +   +RD ++W S+L AY    L ++   +F  M A   ++P+   F +++ A  S
Sbjct: 381 VFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTS 440

Query: 118 LGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFD--SIKLKNSVSWT 175
             +   G+++HA  V + F  D V++++L++MYAKCG  ++A+A+FD  S   ++ ++WT
Sbjct: 441 RTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWT 500

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
           ++++ YA+ G+ + A+++F          WT                     M+++GV  
Sbjct: 501 SLVAGYAQYGQAERALKLF----------WT---------------------MQQQGVR- 528

Query: 236 VDPLVLSSIVGACANFAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYAKCSD 288
            + +   S + AC +   LE G ++       HG+V A  + SC      IVD+  +C  
Sbjct: 529 PNHITFISALTACNHGGKLEQGCELLSGMTPDHGIVPASKHFSC------IVDLLGRCGR 582

Query: 289 IIAAKDIFGRMRRKDVVSWTSII 311
           +  A+ +  R  + DV++W +++
Sbjct: 583 LDEAEKLLERTSQADVITWMALL 605



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/241 (29%), Positives = 118/241 (48%), Gaps = 9/241 (3%)

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
            L ++V AC+    L  G++IH  +    +E    + NA++ MY+KC  +I AK  F R+
Sbjct: 9   ALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRL 68

Query: 300 RR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV-KPNEVTFVGLIYACSHVGLV 355
            R   +DVV+W ++I    ++G A E L L+ +M   G   PN VTFV ++ +C   GL+
Sbjct: 69  PRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLL 128

Query: 356 G-KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA-ENLIKAMPFEPDEP--TWA 411
             +  +     I   GI       T L+D   + G LD+A E  ++    EP     T +
Sbjct: 129 SLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCS 188

Query: 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
           A++SAC  +   +   R+  + ++L+   PS   L+S + A + +    +    L   ME
Sbjct: 189 AMISACWQNGWPQESLRLF-YAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFVLEQAME 247

Query: 472 V 472
           V
Sbjct: 248 V 248



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 14/170 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTAYN 80
           + +HA+++  G      + N L++ Y KC  +  A  + ++    Q D ++W S++  Y 
Sbjct: 448 REIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYA 507

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD- 139
           Q    ++ + +F TM     ++P+H  F S + AC        GK    C +LS    D 
Sbjct: 508 QYGQAERALKLFWTMQQ-QGVRPNHITFISALTAC-----NHGGKLEQGCELLSGMTPDH 561

Query: 140 DVVKSS-----LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
            +V +S     +VD+  +CG  + A  + +     + ++W A+L A   S
Sbjct: 562 GIVPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADVITWMALLDACKNS 611


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 240/664 (36%), Positives = 344/664 (51%), Gaps = 81/664 (12%)

Query: 23  KTLHAQIIKLGLHQYGPLP----NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           +  HAQIIK       PLP    N L++ Y K D    A  LL   P R  V+W +++  
Sbjct: 26  RAAHAQIIKT---LDNPLPSFIYNHLVNMYSKLDRPNSAQLLLSLTPNRSVVTWTALIAG 82

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
             Q       +  FS M   D +QP+ F F    KA GSL +  +GKQVHA  V +    
Sbjct: 83  SVQNGRFTSALFHFSNMRR-DSIQPNDFTFPCAFKASGSLRSPLVGKQVHALAVKAGQIS 141

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIK----------LKNSV---------------- 172
           D  V  S  DMY+K GL   AR +FD +           L NSV                
Sbjct: 142 DVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFR 201

Query: 173 ---------SWTAMLSA-----YARSGRK------KDAME-------------------- 192
                    ++ A L+A     Y R GR+      +   E                    
Sbjct: 202 HEGWEPNLITFCAFLNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVG 261

Query: 193 ----IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
               IF      N   W +++   VQ+  E  A   F+  R+EG++  D +V SS++ AC
Sbjct: 262 CSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARKEGIEPTDFMV-SSVLSAC 320

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A  +VLE+GK +H L +       +F+ +A+VDMY KC  I  A+  F  M  +++V+W 
Sbjct: 321 AGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWN 380

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAG--VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           ++I G A  GQA+  + L+DEM      V PN VTFV ++ ACS  G V  G ++F+SM 
Sbjct: 381 AMIGGYAHQGQADMAVTLFDEMTCGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMR 440

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             YGI P  +HY C++DLL R+G +++A   IK MP  P    W ALL A K    +E+G
Sbjct: 441 GRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELG 500

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
              A++L  L P D  +++LLSN++A+A  W+  + VRK M  + +KK  G S+I  G  
Sbjct: 501 KVAADNLFELDPLDSGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWITAGNA 560

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            H+F A +TSH    EI  +L +L  EM+  GY+PDTS  L D+E++EK  ++++HSE++
Sbjct: 561 VHVFQAKDTSHERNSEIQAMLAKLRGEMEAAGYIPDTSFALFDLEEEEKAMEVWYHSEKI 620

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+A+GL+    G  +R+ KNLR+CGDCH  +K IS I  REI+VRD   +H F+D +CSC
Sbjct: 621 ALAFGLISIPAGVPIRITKNLRICGDCHSAIKFISGIVGREIIVRDNNLFHRFRDNQCSC 680

Query: 607 NDFW 610
            D+W
Sbjct: 681 RDYW 684



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 94/187 (50%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        + LH  +++ G      + N LID YGKC  V  +  +   + + + 
Sbjct: 216 LNACAGASYLRLGRQLHGFVLQSGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPND 275

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S++ +Y Q +  +K   +F      + ++P  F+ +S++ AC  L    +GK VH 
Sbjct: 276 VSWCSMIVSYVQNDEEEKACLVFLRARK-EGIEPTDFMVSSVLSACAGLSVLEVGKSVHT 334

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V +    +  V S+LVDMY KCG   +A   FD +  +N V+W AM+  YA  G+   
Sbjct: 335 LAVKACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADM 394

Query: 190 AMEIFEQ 196
           A+ +F++
Sbjct: 395 AVTLFDE 401



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 164/378 (43%), Gaps = 48/378 (12%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLS---PFCDDDVVKSSLVDMYAKCGLPN 157
           L P+    ASLV++  S   +RLG+  HA  + +   P      + + LV+MY+K   PN
Sbjct: 4   LSPNSL--ASLVESAVSTQCSRLGRAAHAQIIKTLDNPL--PSFIYNHLVNMYSKLDRPN 59

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
           +A+ +      ++ V+WTA                               L++G VQ+  
Sbjct: 60  SAQLLLSLTPNRSVVTWTA-------------------------------LIAGSVQNGR 88

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
              A + F  MRR+ +   D         A  +     +GKQ+H L +  G  S +F+  
Sbjct: 89  FTSALFHFSNMRRDSIQPND-FTFPCAFKASGSLRSPLVGKQVHALAVKAGQISDVFVGC 147

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           +  DMY+K      A+ +F  M  +++ +W + +  +   G+ ++ L  + E    G +P
Sbjct: 148 SAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEGRYDDALTAFIEFRHEGWEP 207

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           N +TF   + AC+    +  GR+L   +++  G    +     L+D   +   +  +E +
Sbjct: 208 NLITFCAFLNACAGASYLRLGRQLHGFVLQS-GFEADVSVANGLIDFYGKCHQVGCSEII 266

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE--DPSSYILLSNVYASAA 455
              +  +P++ +W +++ +   +   E    V    L  + E  +P+ +++ S + A A 
Sbjct: 267 FSGIS-KPNDVSWCSMIVSYVQNDEEEKACLV---FLRARKEGIEPTDFMVSSVLSACAG 322

Query: 456 MWQHVSKVRKLMSVMEVK 473
           +   V +V K +  + VK
Sbjct: 323 L--SVLEVGKSVHTLAVK 338


>gi|222641236|gb|EEE69368.1| hypothetical protein OsJ_28705 [Oryza sativa Japonica Group]
          Length = 662

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/571 (38%), Positives = 324/571 (56%), Gaps = 11/571 (1%)

Query: 42  NTLIDAYGKC-DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDK 100
           N L+  Y +    +  A HL + +P  D VS+ ++L+ +  +        +F++M   D 
Sbjct: 101 NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDV 160

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           +      + ++V      GA    K V   F+  P   + V  +++V  +A     + A 
Sbjct: 161 VS-----WNTMVSGLSKSGAVEEAKAV---FLAMPV-RNSVSWNAMVSGFACSRDMSAAE 211

Query: 161 AVFDSIKLK-NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
             F +   K ++V WTAM+S Y   G    A+E FE  PVRNL  W A+V+G V++ +  
Sbjct: 212 EWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHAD 271

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           DA   F  M RE     +   LSS++  C+N + L  GKQIH   + L     L +  ++
Sbjct: 272 DALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSL 331

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           V MY KC D+ +A  +FG M  +DVV+W ++I G AQHG  +E + L++ M   GV+PN 
Sbjct: 332 VSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNW 391

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           +TFV ++ AC H GL   G + F+ M E YGI P + HY+C++DLL R+G L+ A +LI+
Sbjct: 392 ITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIR 451

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
           +MPFEP    +  LL+AC+ ++N E     A  L+   P+   +Y+ L+N+YA A  W  
Sbjct: 452 SMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDD 511

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
           VS+VR+ M    V K PGYS+IE     H F + +  HP    I E L +L   MK  GY
Sbjct: 512 VSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGY 571

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
           VPD   VLHD+++  K + L  HSE+LA+++GL+ + PG  LR+ KNLRVCGDCH   K+
Sbjct: 572 VPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKV 631

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           IS+I  REI++RD TR+HHF+ G CSC D+W
Sbjct: 632 ISKIEDREIILRDTTRFHHFRGGHCSCGDYW 662



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 8/136 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   +KL L +   +  +L+  Y KC  +  A  L  EM  RD V+W ++++ Y Q 
Sbjct: 310 KQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQH 369

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----KQVHACFVLSPFCD 138
              ++ I++F  M   + ++P+   F +++ AC   G    G    + +   + + P  D
Sbjct: 370 GDGKEAINLFERMKD-EGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVD 428

Query: 139 DDVVKSSLVDMYAKCG 154
                S +VD+  + G
Sbjct: 429 H---YSCMVDLLCRAG 441


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/630 (34%), Positives = 345/630 (54%), Gaps = 66/630 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGL-------------------------------HQYG 38
           L+ CA+ +     + +H  ++KLG                                H+  
Sbjct: 110 LKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDV 169

Query: 39  PLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                LI  Y     +  A  + +E+P +D VSW ++++ Y +    ++ + +F  M+  
Sbjct: 170 VSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMMKT 229

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           + ++PD     +++ AC    +  LG+QVH+      F  +  + ++L+D+Y KCG    
Sbjct: 230 N-VKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVET 288

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A  +F+ +  K+ +SW  ++  Y      K+A+ +F++           L SG  +S NE
Sbjct: 289 ASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQE----------MLRSG--ESPNE 336

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL--GYESCLFIS 276
           +                     + SI+ ACA+   +++G+ IH  +     G  +   + 
Sbjct: 337 V--------------------TMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLR 376

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
            +++DMYAKC DI AA+ +F  M  + + SW ++I G A HG+A     ++  M   G++
Sbjct: 377 TSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIE 436

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
           P+++TFVGL+ ACSH G++  GR +F+SM EDY ITP L+HY C++DLL  SG   EAE 
Sbjct: 437 PDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAEE 496

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           +I +M  +PD   W +LL ACK H N E+G   A +L+ ++P++  SY+LLSN+YA+A  
Sbjct: 497 MINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAGR 556

Query: 457 WQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKR 516
           W  V+K R L++   +KK PG S IE     H F  G+  HP   EI+ +L E++  ++ 
Sbjct: 557 WNEVAKRRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKLHPRNREIYGMLEEMEVLLEE 616

Query: 517 RGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIV 576
            G+VPDTS VL +ME++ KE  L  HSE+LA+A+GL+ + PGT L +VKNLRVC +CH  
Sbjct: 617 AGFVPDTSEVLQEMEEEWKEGALRHHSEKLAIAFGLISTKPGTKLTIVKNLRVCRNCHEA 676

Query: 577 MKMISRITKREIVVRDATRYHHFKDGKCSC 606
            K+IS+I KREI+ RD TR+HHF DG CSC
Sbjct: 677 TKLISKIYKREIIARDRTRFHHFXDGVCSC 706



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 131/448 (29%), Positives = 231/448 (51%), Gaps = 42/448 (9%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLID---AYGKCDLVQYAHHLLEEMPQRDHVSWASILT 77
           +++ +HA++IK GLH      + LI+        D + YA  + + + + + + W ++  
Sbjct: 17  SLRIIHAKMIKTGLHNTNYALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFR 76

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
            +  ++ P   + ++  M++L  L P+ + F  L+KAC    A R G+Q+H   VL   C
Sbjct: 77  GHALSSDPVSALYLYVCMISLG-LVPNSYTFPFLLKACAKSKAFREGQQIHG-HVLKLGC 134

Query: 138 DDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           D D+ V +SL+ MY K G   +AR VFD    ++ VS+TA++  YA +G    A ++F++
Sbjct: 135 DLDLYVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDE 194

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
            PV+++  W AL+SG  ++ N  +A   F EM +  V   D   + +++ ACA  A +EL
Sbjct: 195 IPVKDVVSWNALISGYAETGNYKEALELFKEMMKTNVK-PDESTMVTVLSACAQSASIEL 253

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           G+Q+H  +   G+ S L I NA++D+Y KC ++  A  +F  +  KDV+SW ++I G   
Sbjct: 254 GRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTH 313

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY-GITPSL 375
               +E L L+ EM+ +G  PNEVT + ++ AC+H+G +  GR +   + +   G++   
Sbjct: 314 MNLYKEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPS 373

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAM---------------------------------- 401
              T L+D+ ++ G ++ A+ +  +M                                  
Sbjct: 374 SLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKD 433

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRV 429
             EPD+ T+  LLSAC H    ++G  +
Sbjct: 434 GIEPDDITFVGLLSACSHSGMLDLGRHI 461


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/603 (35%), Positives = 339/603 (56%), Gaps = 35/603 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C   +     K LH  ++ LGL     + NTLI  YGKC  +  A  + + MP+ D 
Sbjct: 369 LAACLDPEFFTNGKILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDK 428

Query: 70  VSWASILTAY-NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGS-LGATRLGKQV 127
           V+W +++  + N A L  + ++ F  M        D+    +++ +C +     + G  +
Sbjct: 429 VTWNALIGGFANNAEL-NEAVAAFKLMREGSTSGVDYITIVNILGSCLTHEDLIKYGIPI 487

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           HA  V++ F  D  V+SSL+ MYAKCG  +++  +FD +  K S  W A+++A AR G  
Sbjct: 488 HAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFG 547

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
           ++A+++                                + MR  G++  D    S+ +  
Sbjct: 548 EEALKLV-------------------------------VRMRSAGIEF-DQFNFSTALSV 575

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
            A+ A+LE G+Q+HG  I LG+E   FI NA +DMY KC ++  A  I  +   +  +SW
Sbjct: 576 AADLAMLEEGQQLHGSTIKLGFELDHFIINAAMDMYGKCGELDDALRILPQPTDRSRLSW 635

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            ++I  +A+HGQ  +    + +M+  GVKPN V+FV L+ ACSH GLV +G   + SM  
Sbjct: 636 NTLISISARHGQFHKAKETFHDMLKLGVKPNHVSFVCLLSACSHGGLVDEGLAYYASMTS 695

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
            YGI P ++H  C++DLL RSG L EAE  I  MP  P++  W +LL++C+ +RN ++G 
Sbjct: 696 VYGIQPGIEHCVCMIDLLGRSGRLVEAEAFITEMPIPPNDLVWRSLLASCRIYRNLDLGR 755

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
           + A HLL L P D S+Y+L SNV+A+   W+ V  VR  M   +++K+P +S++++    
Sbjct: 756 KAAKHLLELDPSDDSAYVLYSNVFATIGRWEDVEDVRGQMGAHKIQKKPAHSWVKWKGNI 815

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
            IF  G+ +HP  ++I   L  L   +   GYVPDTS  L D ++++KE  ++ HSER+A
Sbjct: 816 SIFGMGDQTHPQMEQINGKLLGLMKIVGEAGYVPDTSYSLQDTDEEQKEHNMWSHSERIA 875

Query: 548 VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
           +A+GL+    G+ +R+ KNLRVCGDCH   K +S +  R+IV+RD  R+HHF +G CSC+
Sbjct: 876 LAFGLINIPEGSTVRIFKNLRVCGDCHSFFKFVSGVLGRKIVLRDPYRFHHFTNGNCSCS 935

Query: 608 DFW 610
           D+W
Sbjct: 936 DYW 938



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/444 (24%), Positives = 193/444 (43%), Gaps = 41/444 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L +C         K +H   +K GL     L NTL+  Y      + A  +   MP+RD 
Sbjct: 268 LSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDL 327

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW S+L  Y Q       + +F+ ML + K + ++  F S + AC        GK +H 
Sbjct: 328 ISWNSMLACYVQDGRCLCALKVFAEMLWMKK-EINYVTFTSALAACLDPEFFTNGKILHG 386

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V+    D+ ++ ++L+  Y KC     A+ VF  +   + V+W A++  +A +    +
Sbjct: 387 FVVVLGLQDELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELNE 446

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+  F+                                MR      VD + + +I+G+C 
Sbjct: 447 AVAAFKL-------------------------------MREGSTSGVDYITIVNILGSCL 475

Query: 250 NFA-VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
               +++ G  IH   +  G++    + ++++ MYAKC D+ ++  IF ++  K    W 
Sbjct: 476 THEDLIKYGIPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWN 535

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           +II   A++G  EE L L   M SAG++ ++  F   +   + + ++ +G++L  S I+ 
Sbjct: 536 AIIAANARYGFGEEALKLVVRMRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIK- 594

Query: 369 YGITPSLQHY--TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             +   L H+     +D+  + G LD+A  ++   P +    +W  L+S    H      
Sbjct: 595 --LGFELDHFIINAAMDMYGKCGELDDALRIL-PQPTDRSRLSWNTLISISARHGQFHKA 651

Query: 427 TRVANHLLSL--KPEDPSSYILLS 448
               + +L L  KP   S   LLS
Sbjct: 652 KETFHDMLKLGVKPNHVSFVCLLS 675



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 177/393 (45%), Gaps = 36/393 (9%)

Query: 48  YGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV 107
           Y K   + YA  + + M +R+  SW  +++ Y +     + +  F  +  +  ++P  F+
Sbjct: 2   YSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIG-IKPSGFM 60

Query: 108 FASLVKACG-SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
            ASLV AC  S    + G Q H   +      D  V +S V  YA  G+ +NA+ +F+ +
Sbjct: 61  IASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEM 120

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
             +N VSWT+++ +Y+ +G KK+ +  +++                              
Sbjct: 121 PDRNVVSWTSLMVSYSDNGSKKEVINTYKR------------------------------ 150

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            MR EG+   +   ++ ++ +C     + LG Q+ G  +  G E+ +  +N+++ M+  C
Sbjct: 151 -MRHEGI-CCNENNIALVISSCGFLMDIILGHQLLGHALKFGLETKVSAANSLIFMFGGC 208

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
            DI  A  IF  M  +D +SW SII   AQ+   EE+   +  M     + N  T   L+
Sbjct: 209 GDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTLSILL 268

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
             C  V  +  G+ +    ++ YG+  ++     LL + S +G   +AE + + MP E D
Sbjct: 269 SICGSVDYLKWGKGVHGLAVK-YGLESNICLCNTLLSVYSDAGRSKDAELIFRRMP-ERD 326

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
             +W ++L+            +V   +L +K E
Sbjct: 327 LISWNSMLACYVQDGRCLCALKVFAEMLWMKKE 359



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 102/432 (23%), Positives = 184/432 (42%), Gaps = 42/432 (9%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
            H   IK GL     +  + +  Y    +V  A  +  EMP R+ VSW S++ +Y+    
Sbjct: 81  FHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYSDNGS 140

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            ++ I+ +  M   + +  +    A ++ +CG L    LG Q+    +           +
Sbjct: 141 KKEVINTYKRMRH-EGICCNENNIALVISSCGFLMDIILGHQLLGHALKFGLETKVSAAN 199

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SL+ M+  CG  N A ++F+ +  ++++S                               
Sbjct: 200 SLIFMFGGCGDINEACSIFNEMNERDTIS------------------------------- 228

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W +++S   Q+    ++F  F  MR    +I +   LS ++  C +   L+ GK +HGL 
Sbjct: 229 WNSIISANAQNTLHEESFRYFHWMRLVHEEI-NYTTLSILLSICGSVDYLKWGKGVHGLA 287

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           +  G ES + + N ++ +Y+       A+ IF RM  +D++SW S++    Q G+    L
Sbjct: 288 VKYGLESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCAL 347

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            ++ EM+    + N VTF   + AC        G K+    +   G+   L     L+  
Sbjct: 348 KVFAEMLWMKKEINYVTFTSALAACLDPEFFTNG-KILHGFVVVLGLQDELIIGNTLITF 406

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS- 443
             +   + EA+ + + MP + D+ TW AL+    +  N E+   VA     L  E  +S 
Sbjct: 407 YGKCHKMAEAKKVFQRMP-KLDKVTWNALIGGFAN--NAELNEAVA--AFKLMREGSTSG 461

Query: 444 --YILLSNVYAS 453
             YI + N+  S
Sbjct: 462 VDYITIVNILGS 473



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 121/269 (44%), Gaps = 35/269 (13%)

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           MY+K G  N A+ VFD +  +N  SW  M+S Y R G   +A+  F              
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRD------------ 48

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL-ELGKQIHGLVIAL 267
           + G              I ++  G       +++S+V AC   +++ + G Q HG  I  
Sbjct: 49  ICG--------------IGIKPSG------FMIASLVTACNKSSIMAKEGFQFHGFAIKC 88

Query: 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327
           G    +F+  + V  YA    +  A+ +F  M  ++VVSWTS++V  + +G  +E +  Y
Sbjct: 89  GLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYSDNGSKKEVINTY 148

Query: 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
             M   G+  NE     +I +C  +  +  G +L    ++ +G+   +     L+ +   
Sbjct: 149 KRMRHEGICCNENNIALVISSCGFLMDIILGHQLLGHALK-FGLETKVSAANSLIFMFGG 207

Query: 388 SGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G ++EA ++   M  E D  +W +++SA
Sbjct: 208 CGDINEACSIFNEMN-ERDTISWNSIISA 235


>gi|27817913|dbj|BAC55678.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|37806252|dbj|BAC99769.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 613

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/571 (38%), Positives = 324/571 (56%), Gaps = 11/571 (1%)

Query: 42  NTLIDAYGKC-DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDK 100
           N L+  Y +    +  A HL + +P  D VS+ ++L+ +  +        +F++M   D 
Sbjct: 52  NCLLAGYARALGRLADARHLFDRIPTPDAVSYNTLLSCHFASGDADGARRLFASMPVRDV 111

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           +      + ++V      GA    K V   F+  P   + V  +++V  +A     + A 
Sbjct: 112 VS-----WNTMVSGLSKSGAVEEAKAV---FLAMPV-RNSVSWNAMVSGFACSRDMSAAE 162

Query: 161 AVFDSIKLK-NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
             F +   K ++V WTAM+S Y   G    A+E FE  PVRNL  W A+V+G V++ +  
Sbjct: 163 EWFRNAPEKGDAVLWTAMVSGYMDIGNVVKAIEYFEAMPVRNLVSWNAVVAGYVKNSHAD 222

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           DA   F  M RE     +   LSS++  C+N + L  GKQIH   + L     L +  ++
Sbjct: 223 DALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLPLSRNLTVGTSL 282

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           V MY KC D+ +A  +FG M  +DVV+W ++I G AQHG  +E + L++ M   GV+PN 
Sbjct: 283 VSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNW 342

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           +TFV ++ AC H GL   G + F+ M E YGI P + HY+C++DLL R+G L+ A +LI+
Sbjct: 343 ITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDLIR 402

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
           +MPFEP    +  LL+AC+ ++N E     A  L+   P+   +Y+ L+N+YA A  W  
Sbjct: 403 SMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAGANQWDD 462

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
           VS+VR+ M    V K PGYS+IE     H F + +  HP    I E L +L   MK  GY
Sbjct: 463 VSRVRRWMKDNAVVKTPGYSWIEIKGVMHEFRSNDRLHPQLYLIHEKLGQLAERMKAMGY 522

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
           VPD   VLHD+++  K + L  HSE+LA+++GL+ + PG  LR+ KNLRVCGDCH   K+
Sbjct: 523 VPDLDFVLHDVDETLKVQMLMRHSEKLAISFGLISTAPGMTLRIFKNLRVCGDCHNAAKV 582

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           IS+I  REI++RD TR+HHF+ G CSC D+W
Sbjct: 583 ISKIEDREIILRDTTRFHHFRGGHCSCGDYW 613



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/136 (25%), Positives = 64/136 (47%), Gaps = 8/136 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   +KL L +   +  +L+  Y KC  +  A  L  EM  RD V+W ++++ Y Q 
Sbjct: 261 KQIHQWCMKLPLSRNLTVGTSLVSMYCKCGDLSSACKLFGEMHTRDVVAWNAMISGYAQH 320

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----KQVHACFVLSPFCD 138
              ++ I++F  M   + ++P+   F +++ AC   G    G    + +   + + P  D
Sbjct: 321 GDGKEAINLFERMKD-EGVEPNWITFVAVLTACIHTGLCDFGIRCFEGMQELYGIEPRVD 379

Query: 139 DDVVKSSLVDMYAKCG 154
                S +VD+  + G
Sbjct: 380 H---YSCMVDLLCRAG 392


>gi|297817620|ref|XP_002876693.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322531|gb|EFH52952.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 572

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 205/516 (39%), Positives = 311/516 (60%), Gaps = 6/516 (1%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           + PD   F  L+ +  +     LG++ HA  +L     D  V++SL++MY+ CG  ++A 
Sbjct: 57  VSPDFHTFPFLLPSFHNPIHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLSSAL 116

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            +FD    K+  +W ++++AYA++G    A ++F++ P RN+  W+ L++G V      +
Sbjct: 117 RIFDESVSKDLPAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKE 176

Query: 221 AFYSFIEMR--REGVDIVDP--LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
           A   F EM+  +     V P    +S+++ AC     LE GK +H  +   G E  + + 
Sbjct: 177 ALDLFREMQLPKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLG 236

Query: 277 NAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMV-SAG 334
            A++DMYAKC  +  AK +F  +  +KDV +++++I   A +G  +E   ++ EM  S  
Sbjct: 237 TALIDMYAKCGSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSEMTTSNN 296

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
           + PN VTFVG++ AC H GL+ KG+  FK M E++GITPS+QHY C++DL  RSG + EA
Sbjct: 297 INPNSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITPSIQHYGCMVDLYGRSGLIKEA 356

Query: 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454
           E+ I +MP EPD   W +LLS  +   + +        L+ L P +  +Y+LLSNVYA  
Sbjct: 357 ESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKT 416

Query: 455 AMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEM 514
             W  V ++R  M V  +KK PG SY+E     H F  G+ S    + I+ +L E+   +
Sbjct: 417 GRWIEVKRIRHEMEVKGIKKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLEEIMQRL 476

Query: 515 KRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCH 574
           +  GYV DT  VL D+E+K+KE  L +HSE+LA+A+ L+K+ PGT +R++KNLR+CGDCH
Sbjct: 477 REAGYVSDTKEVLLDLEEKDKEMALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCH 536

Query: 575 IVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +VMKMIS++  REIVVRD  R+HHF DG CSC DFW
Sbjct: 537 LVMKMISKLFSREIVVRDCNRFHHFSDGSCSCRDFW 572



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/288 (25%), Positives = 132/288 (45%), Gaps = 40/288 (13%)

Query: 39  PLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
           P  N++++AY K  L+ +A  L +EMP+R+ +SW+ ++  Y      ++ + +F  M  L
Sbjct: 128 PAWNSVVNAYAKAGLINHARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREM-QL 186

Query: 99  DK-----LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC 153
            K     + P+ F  ++++ ACG LGA   GK VH+         D V+ ++L+DMYAKC
Sbjct: 187 PKPNEVFVSPNKFTMSTVLSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKC 246

Query: 154 GLPNNARAVFDSIKLKNSV-SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGL 212
           G    A+ VFD++  K  V +++AM+   A  G   +  ++F +                
Sbjct: 247 GSLERAKRVFDALGSKKDVKAYSAMICCLAMYGLTDECFQVFSE---------------- 290

Query: 213 VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI-ALGYES 271
           + + N I+                + +    I+GAC +  ++  GK    ++    G   
Sbjct: 291 MTTSNNINP---------------NSVTFVGILGACVHRGLINKGKSYFKMMTEEFGITP 335

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHG 318
            +     +VD+Y +   I  A+     M    DV+ W S++ G+   G
Sbjct: 336 SIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRMLG 383



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 9/177 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM-PQRD 68
           L  C R       K +H+ I K G+     L   LID Y KC  ++ A  + + +  ++D
Sbjct: 205 LSACGRLGALEQGKWVHSYIDKYGVEIDIVLGTALIDMYAKCGSLERAKRVFDALGSKKD 264

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
             ++++++       L  +   +FS M   + + P+   F  ++ AC   G    GK   
Sbjct: 265 VKAYSAMICCLAMYGLTDECFQVFSEMTTSNNINPNSVTFVGILGACVHRGLINKGKSYF 324

Query: 129 AC----FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSV-SWTAMLSA 180
                 F ++P          +VD+Y + GL   A +   S+ ++  V  W ++LS 
Sbjct: 325 KMMTEEFGITPSIQH---YGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSG 378


>gi|302785251|ref|XP_002974397.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
 gi|300157995|gb|EFJ24619.1| hypothetical protein SELMODRAFT_101239 [Selaginella moellendorffii]
          Length = 679

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 228/647 (35%), Positives = 346/647 (53%), Gaps = 54/647 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ CAR       + +H  + ++GL     + N L+  YGKC  ++ A  + E  P ++ 
Sbjct: 41  IQSCARLGALAEGRRIHQLMRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNV 100

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL--GKQV 127
            SW  ++T   Q    Q+ +++F  ML    +QP    F + + AC S G   L  G+ +
Sbjct: 101 FSWTILITVCAQHGRSQEALALFYEMLK-QGIQPHSVSFTAAINAC-SAGPEFLPAGRAL 158

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           HA      F D  V  +SLV MY+KCG    +   F+S+   N+VSW AM++A+A   R 
Sbjct: 159 HALLRRYGFQDAVVATTSLVSMYSKCGSLEESMRTFESMTEPNAVSWNAMIAAFAEHRRG 218

Query: 188 KDAMEIFE---------------------------------------QAPVRNLFLWTAL 208
            +A+   +                                       Q P  N+  W  L
Sbjct: 219 LEALRTLQKMFLEGIRACSDVVVGTTLVNMYAKCSGLHDANAAFVKLQEP--NIITWNVL 276

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV---- 264
           +S  VQ     +A   F  M   G+++ D +   +I+GAC     LE G+ IH  V    
Sbjct: 277 ISAYVQHCCFKEAMELFRRMLLLGLEM-DEVTFINILGACCVPVALEDGRAIHACVREHP 335

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           +A  +     + N I++MY KC  +  A+ +F  M + DV++W ++I    QHG   E L
Sbjct: 336 LASNHAP---LENVILNMYGKCGSLQDAEAMFKSMSQPDVIAWNTMIAAYGQHGHTSEAL 392

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYA-CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
             Y+ M   GV P++ T+V +I A C++ GL  +    F SM +D+G+ P   HY C+++
Sbjct: 393 RFYELMQEEGVVPDDYTYVSVIDASCANAGLPEEAHAYFVSMQQDHGVRPGGGHYGCMVE 452

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
            L ++G L +AE LI+ MPFEPD  TW + L+ C+ H + + G   A   + + PE  + 
Sbjct: 453 SLGKAGRLSDAETLIQCMPFEPDVLTWTSFLANCRSHGDMKRGKLAAKGAIRIDPEASTG 512

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
           Y+ L+ ++A A  +Q  S++RKLM    ++K  G S I+ G   + F AG+ S+P   EI
Sbjct: 513 YVALARIHADAGDFQEASRIRKLMLDRGIRKNAGRSIIKLGTSVYEFTAGDQSNPRSKEI 572

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
           F+ L  LD EMK  GY PD + V HD+E  +KE  LF HSERLA+A+G++ + PGT LR+
Sbjct: 573 FDELKRLDKEMKSAGYDPDMAHVAHDVEAGQKEPLLFAHSERLAIAFGIISTSPGTPLRI 632

Query: 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +KNLRVCGDCH + K+ S+IT+REI+VRD+ R+HHFK+G CSC DFW
Sbjct: 633 MKNLRVCGDCHTMTKLTSKITRREIIVRDSNRFHHFKNGSCSCKDFW 679



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 118/215 (54%), Gaps = 6/215 (2%)

Query: 209 VSGLVQSRNEIDAFYSFIE--MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
           +S L+  R ++    + I+   +R+  D+ + +    ++ +CA    L  G++IH L+  
Sbjct: 6   LSTLLSKRQQLGQIAAAIDALQKRKDADLKECV---RVIQSCARLGALAEGRRIHQLMRR 62

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
           +G  S +++SN +V MY KC  +  A+ +F     K+V SWT +I   AQHG+++E LAL
Sbjct: 63  VGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKNVFSWTILITVCAQHGRSQEALAL 122

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
           + EM+  G++P+ V+F   I ACS         +   +++  YG   ++   T L+ + S
Sbjct: 123 FYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALHALLRRYGFQDAVVATTSLVSMYS 182

Query: 387 RSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           + G L+E+    ++M  EP+  +W A+++A   HR
Sbjct: 183 KCGSLEESMRTFESMT-EPNAVSWNAMIAAFAEHR 216



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 167/382 (43%), Gaps = 39/382 (10%)

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN 170
           ++++C  LGA   G+++H          D  V + LV MY KCG    AR VF++   KN
Sbjct: 40  VIQSCARLGALAEGRRIHQLMRRVGLGSDVYVSNHLVMMYGKCGSLEEARLVFEATPAKN 99

Query: 171 SVSWTAMLSAYARSGRKKDAMEIF----EQAPVRNLFLWTALVSGLVQSRNEIDAFYSF- 225
             SWT +++  A+ GR ++A+ +F    +Q    +   +TA ++        + A  +  
Sbjct: 100 VFSWTILITVCAQHGRSQEALALFYEMLKQGIQPHSVSFTAAINACSAGPEFLPAGRALH 159

Query: 226 IEMRREGVD--IVDPLVLSSIVGACA--------------------NFAVLELGKQIHGL 263
             +RR G    +V    L S+   C                     N  +    +   GL
Sbjct: 160 ALLRRYGFQDAVVATTSLVSMYSKCGSLEESMRTFESMTEPNAVSWNAMIAAFAEHRRGL 219

Query: 264 --------VIALGYESC--LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
                   +   G  +C  + +   +V+MYAKCS +  A   F +++  ++++W  +I  
Sbjct: 220 EALRTLQKMFLEGIRACSDVVVGTTLVNMYAKCSGLHDANAAFVKLQEPNIITWNVLISA 279

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
             QH   +E + L+  M+  G++ +EVTF+ ++ AC     +  GR +   + E    + 
Sbjct: 280 YVQHCCFKEAMELFRRMLLLGLEMDEVTFINILGACCVPVALEDGRAIHACVREHPLASN 339

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
                  +L++  + G L +AE + K+M  +PD   W  +++A   H +T    R    L
Sbjct: 340 HAPLENVILNMYGKCGSLQDAEAMFKSMS-QPDVIAWNTMIAAYGQHGHTSEALRFYE-L 397

Query: 434 LSLKPEDPSSYILLSNVYASAA 455
           +  +   P  Y  +S + AS A
Sbjct: 398 MQEEGVVPDDYTYVSVIDASCA 419


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/588 (37%), Positives = 329/588 (55%), Gaps = 33/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  +IK        +   L+D Y K  L+  A  + E +P++D + W ++++  +  
Sbjct: 325 RQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHG 384

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               +++S+F  M   +    +    A+++K+  SL A     QVHA      F  D  V
Sbjct: 385 GCHGESLSLFCRMRK-EGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHV 443

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            + L+D Y KC                N + +               A ++FE+    N+
Sbjct: 444 VNGLIDSYWKC----------------NCLRY---------------ANKVFEEHSSDNI 472

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             +T++++ L Q  +  DA   F+EM R+G++  DP VLSS++ ACA+ +  E GKQ+H 
Sbjct: 473 IAFTSMITALSQCDHGEDAIKLFMEMLRKGLE-PDPFVLSSLLNACASLSAYEQGKQVHA 531

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +I   + + +F  NA+V  YAKC  I  A   F  +  K VVSW+++I G AQHG  + 
Sbjct: 532 HLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKR 591

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L ++  MV   + PN +T   ++ AC+H GLV + +  F SM E +GI  + +HY+C++
Sbjct: 592 ALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMI 651

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G LD+A  L+ +MPFE +   W ALL+A + HR+ E+G   A  L  L+PE   
Sbjct: 652 DLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSG 711

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +++LL+N YASA MW  V+KVRKLM   +VKKEP  S++E     H F  G+ SHP   +
Sbjct: 712 THVLLANTYASAGMWDEVAKVRKLMKDSKVKKEPAMSWVELKDRVHTFIVGDKSHPRARD 771

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L EL   M + GYVP+    LHD+++ EKE  L  HSERLAVA+ L+ +  G  +R
Sbjct: 772 IYAKLEELGDLMSKAGYVPNLEVDLHDVDKSEKELLLSHHSERLAVAFALISTPAGAPIR 831

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V KNLR+C DCH+  K IS+I  REI++RD  R+HHF DG CSC D+W
Sbjct: 832 VKKNLRICRDCHVAFKFISKIVSREIIIRDINRFHHFSDGACSCGDYW 879



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 128/405 (31%), Positives = 193/405 (47%), Gaps = 57/405 (14%)

Query: 25  LHAQIIKLGL-HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           +HA ++K GL H +    N L+  Y KC L   A  + +E P   HVSW+S++TAY+   
Sbjct: 26  IHAHLLKSGLLHAF---RNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSNNA 82

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
           LP++ ++ F  M A   ++ + F    ++K     G   LG QVHA  V +    D  V 
Sbjct: 83  LPREALAAFRAMRA-RGVRCNEFALPIVLKCAPDAG---LGVQVHAVAVSTGLSGDIFVA 138

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           ++LV MY   G  + AR VFD                              E A  RN  
Sbjct: 139 NALVAMYGGFGFVDEARRVFD------------------------------EAARDRNAV 168

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            W  ++S  V++    DA   F EM   GV   +    S +V AC     LE G+++H +
Sbjct: 169 SWNGMMSAFVKNDRCSDAVELFGEMVWSGVR-PNEFGFSCVVNACTGSRDLEAGRKVHAM 227

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           V+  GY+  +F +NA+VDMY+K  DI  A  +FG++ + DVVSW + I G   HG  +  
Sbjct: 228 VVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHA 287

Query: 324 LALYDEMVSAGVKPNEVTFVGLI--YACSHVGLVGKGRKLFKSMI------EDY-GITPS 374
           L L  +M S+G+ PN  T   ++   A +  G    GR++   MI      +DY G+   
Sbjct: 288 LELLLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVA-- 345

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
                 L+D+ ++ G LD+A  + + +P   D   W AL+S C H
Sbjct: 346 ------LVDMYAKYGLLDDARKVFEWIP-RKDLLLWNALISGCSH 383



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 113/468 (24%), Positives = 201/468 (42%), Gaps = 77/468 (16%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ-RDHVSWASILTAYNQAN 83
           +HA  +  GL     + N L+  YG    V  A  + +E  + R+ VSW  +++A+ + +
Sbjct: 122 VHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKND 181

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
                + +F  M+    ++P+ F F+ +V AC        G++VHA  V + +  D    
Sbjct: 182 RCSDAVELFGEMV-WSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTA 240

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           ++LVDMY+K G  + A  VF  +                               P  ++ 
Sbjct: 241 NALVDMYSKLGDIHMAALVFGKV-------------------------------PKTDVV 269

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV--GACANFAVLELGKQIH 261
            W A +SG V   ++  A    ++M+  G+ + +   LSSI+   A A      LG+QIH
Sbjct: 270 SWNAFISGCVLHGHDQHALELLLQMKSSGL-VPNVFTLSSILKACAGAGAGAFALGRQIH 328

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           G +I    +S  +I  A+VDMYAK   +  A+ +F  + RKD++ W ++I G +  G   
Sbjct: 329 GFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHG 388

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK---------------LFKSMI 366
           E+L+L+  M   G   N  T   ++ + + +  +    +               +   +I
Sbjct: 389 ESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLI 448

Query: 367 EDYGITPSLQH---------------YTCLLDLLSRSGHLDEAENLIKAM---PFEPDEP 408
           + Y     L++               +T ++  LS+  H ++A  L   M     EPD  
Sbjct: 449 DSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPF 508

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
             ++LL+AC      E G +V  HL+  K         +++V+A  A+
Sbjct: 509 VLSSLLNACASLSAYEQGKQVHAHLIKRK--------FMTDVFAGNAL 548


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/609 (35%), Positives = 343/609 (56%), Gaps = 38/609 (6%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           H+   L+ C         + LH +++  GL     L   L+D Y  C  V +A  L + M
Sbjct: 64  HHTSILQSCVASGSLRAGRQLHGRLLVSGLGPDTVLSTKLVDLYAACGQVGHARRLFDGM 123

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           P+R+   W  ++ AY +    +  + ++  M+    ++PD+F +  ++KAC +L     G
Sbjct: 124 PKRNVFLWNVLIRAYAREGPREAAVRLYRGMVE-HGVEPDNFTYPLVLKACAALLDLETG 182

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           ++VH     + +  D  V + +VDMYAKCG  ++ARAV                      
Sbjct: 183 REVHQRVSGTRWGQDVFVCAGVVDMYAKCGCVDDARAV---------------------- 220

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV--LS 242
                    F+   VR+  +W ++++   Q+   ++A     +M   G+    P +  L 
Sbjct: 221 ---------FDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIG---PTIATLV 268

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           S V A A+ A L  G+++HG     G+     +  ++VDMYAK   +  A+ +F ++ ++
Sbjct: 269 SAVSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKR 328

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           ++VSW ++I G   HG A+E LAL+++M   A V P+ +TFVG++ AC+H G+V + ++ 
Sbjct: 329 ELVSWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEF 388

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F  M+  Y I P++QHYTC++D+L  +G  +EA +LIK M  EPD   W ALL+ CK H+
Sbjct: 389 FYLMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHK 448

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           N E+G      L+ L+PED  +Y+ LSN+YA +  W+  ++VRKLM+   +KK    S+I
Sbjct: 449 NVELGELALQKLIELEPEDAGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWI 508

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E    +H F  G+ SHP  DEI+  L  L+  M   GYVPD   V H+++  EK   +  
Sbjct: 509 ELKGKTHGFLVGDASHPRSDEIYGELERLEGLMSDAGYVPDIIPVFHNVDDDEKRNMVRS 568

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSERLA+A+GL+ + PGT L V KNLRVC DCH+V+K+IS+I +REI++RD  RYHHF +
Sbjct: 569 HSERLAIAFGLISTPPGTKLLVTKNLRVCEDCHVVIKLISQIVQREIIIRDVNRYHHFVN 628

Query: 602 GKCSCNDFW 610
           G+CSC D+W
Sbjct: 629 GECSCKDYW 637


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/577 (35%), Positives = 326/577 (56%), Gaps = 14/577 (2%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+L+D Y KC  V+ A      + Q D VSW ++L  Y      ++ I + S M     +
Sbjct: 402 NSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEM-KFQGI 460

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR- 160
           +PD   +  LV      G    GK     F        D   +++    A CG   N + 
Sbjct: 461 EPDIITWNGLVTGFTQYGD---GKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKL 517

Query: 161 -------AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLV 213
                   + + I+L   V  +A++S Y+     + A  +F +   R++ +W +++S   
Sbjct: 518 GKEIHGYVLRNHIELSTGVG-SALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACA 576

Query: 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
           QS   ++A     EM    V+ V+ + + S + AC+  A L  GK+IH  +I  G ++C 
Sbjct: 577 QSGRSVNALDLLREMNLSNVE-VNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCN 635

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
           FI N+++DMY +C  I  ++ IF  M ++D+VSW  +I     HG   + + L+ +  + 
Sbjct: 636 FILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTM 695

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
           G+KPN +TF  L+ ACSH GL+ +G K FK M  +Y + P+++ Y C++DLLSR+G  +E
Sbjct: 696 GLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNE 755

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453
               I+ MPFEP+   W +LL AC+ H N ++    A +L  L+P+   +Y+L++N+Y++
Sbjct: 756 TLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFELEPQSSGNYVLMANIYSA 815

Query: 454 AAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAE 513
           A  W+  +K+R LM    V K PG S+IE  +  H F  G+TSHPL ++I   +  L  +
Sbjct: 816 AGRWEDAAKIRCLMKERGVTKPPGCSWIEVKRKLHSFVVGDTSHPLMEQISAKMESLYFD 875

Query: 514 MKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDC 573
           +K  GYVPDT+ VL D+++ EKE  L  HSE++A+A+GL+ +  GT LR++KNLRVCGDC
Sbjct: 876 IKEIGYVPDTNFVLQDVDEDEKEFSLCGHSEKIALAFGLISTTAGTPLRIIKNLRVCGDC 935

Query: 574 HIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           H   K IS++ KR+I++RD  R+HHF DG CSC D+W
Sbjct: 936 HSATKFISKVEKRDIIMRDNYRFHHFVDGVCSCGDYW 972



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 218/451 (48%), Gaps = 76/451 (16%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HAQ++  G+     L + L++ Y +   V+ A  + ++M +R+  SW +I+  Y     
Sbjct: 111 VHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGD 170

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            ++TI +F  M+  + ++PDHFVF  + KAC  L   R+GK V+   +   F  +  VK 
Sbjct: 171 YEETIKLFYLMVN-EGVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKG 229

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKN---------------------------------- 170
           S++DM+ KCG  + AR  F+ I+ K+                                  
Sbjct: 230 SILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKP 289

Query: 171 -SVSWTAMLSAYARSGRKKDAMEIF-EQAPVR----NLFLWTALVSGLVQSRNEIDAFYS 224
             V+W A++S YA+SG+ ++A + F E   ++    N+  WTAL++G  Q+  + +A   
Sbjct: 290 DQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSV 349

Query: 225 FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG-YESCLFISNAIVDMY 283
           F +M  EGV   + + ++S V AC N ++L  G++IHG  I +   +S L + N++VD Y
Sbjct: 350 FRKMVLEGVK-PNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYY 408

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           AKC  +  A+  FG +++ D+VSW +++ G A  G  EE + L  EM   G++P+ +T+ 
Sbjct: 409 AKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWN 468

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
           GL+   +  G      + F+ M                                  +M  
Sbjct: 469 GLVTGFTQYGDGKAALEFFQRM---------------------------------HSMGM 495

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           +P+  T +  L+AC   RN ++G  +  ++L
Sbjct: 496 DPNTTTISGALAACGQVRNLKLGKEIHGYVL 526



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 127/444 (28%), Positives = 204/444 (45%), Gaps = 45/444 (10%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMP-----QRDHVSWASILTAYNQANLPQKTISIFSTML 96
           N +I  Y +    + A     EM      + + VSW +++    Q     + +S+F  M+
Sbjct: 295 NAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYDFEALSVFRKMV 354

Query: 97  ALDKLQPDHFVFASLVKACGSLGATRLGKQVHA-CFVLSPFCDDDVVKSSLVDMYAKCGL 155
            L+ ++P+    AS V AC +L   R G+++H  C  +     D +V +SLVD YAKC  
Sbjct: 355 -LEGVKPNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRS 413

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR----NLFLWTALVSG 211
              AR  F  IK  + VSW AML+ YA  G  ++A+E+  +   +    ++  W  LV+G
Sbjct: 414 VEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTG 473

Query: 212 LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271
             Q  +   A   F  M   G+D  +   +S  + AC     L+LGK+IHG V+    E 
Sbjct: 474 FTQYGDGKAALEFFQRMHSMGMD-PNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIEL 532

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
              + +A++ MY+ C  +  A  +F  +  +DVV W SII   AQ G++   L L  EM 
Sbjct: 533 STGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMN 592

Query: 332 SAGVKPNEVTFVGLIYACSHVGLVGKGRK---------------LFKSMIEDYGITPSLQ 376
            + V+ N VT V  + ACS +  + +G++               +  S+I+ YG   S+Q
Sbjct: 593 LSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQ 652

Query: 377 HYTCLLDLLSRS---------------GHLDEAENL---IKAMPFEPDEPTWAALLSACK 418
               + DL+ +                G   +A NL    + M  +P+  T+  LLSAC 
Sbjct: 653 KSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACS 712

Query: 419 HHRNTEMGTRVANHLLSLKPEDPS 442
           H    E G +    + +    DP+
Sbjct: 713 HSGLIEEGWKYFKMMKTEYAMDPA 736



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 193/435 (44%), Gaps = 59/435 (13%)

Query: 97  ALDKLQPDHFV--FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
           ++D   PD  +  +AS+++ C  L   RLG QVHA  V++            VD+    G
Sbjct: 79  SMDLTNPDECIEIYASILQKCRKLYNLRLGFQVHAQLVVNG-----------VDVCEFLG 127

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVS---G 211
                               + +L  Y ++G  +DA  +F++   RN+F WTA++    G
Sbjct: 128 --------------------SRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCG 167

Query: 212 LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271
           L      I  FY    M  EGV   D  V   +  AC+      +GK ++  ++++G+E 
Sbjct: 168 LGDYEETIKLFYL---MVNEGVR-PDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEG 223

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
              +  +I+DM+ KC  +  A+  F  +  KDV  W  ++ G    G+ ++ L    +M 
Sbjct: 224 NSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMK 283

Query: 332 SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
            +GVKP++VT+  +I   +  G   +  K F  M       P++  +T L+    ++G+ 
Sbjct: 284 LSGVKPDQVTWNAIISGYAQSGQFEEASKYFLEMGGLKDFKPNVVSWTALIAGSEQNGYD 343

Query: 392 DEAENLIKAMPFE---PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
            EA ++ + M  E   P+  T A+ +SAC +      G  +  H   +K E+  S +L+ 
Sbjct: 344 FEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREI--HGYCIKVEELDSDLLVG 401

Query: 449 NVYAS-AAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELL 507
           N      A  + V   R+   +++      ++ +  G      YA   SH   +E  ELL
Sbjct: 402 NSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAG------YALRGSH---EEAIELL 452

Query: 508 TELDAEMKRRGYVPD 522
           +    EMK +G  PD
Sbjct: 453 S----EMKFQGIEPD 463



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 1/174 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  +++  +     + + LI  Y  CD ++ A  +  E+  RD V W SI++A  Q+
Sbjct: 519 KEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQS 578

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 + +   M  L  ++ +     S + AC  L A R GK++H   +       + +
Sbjct: 579 GRSVNALDLLREM-NLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFIIRCGLDTCNFI 637

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
            +SL+DMY +CG    +R +FD +  ++ VSW  M+S Y   G   DA+ +F+Q
Sbjct: 638 LNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQ 691



 Score = 86.3 bits (212), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 124/272 (45%), Gaps = 28/272 (10%)

Query: 212 LVQSRNEIDAFYSFIEMRREGV-----------DIVDP----LVLSSIVGACANFAVLEL 256
           L  +R  I  F     + R GV           D+ +P     + +SI+  C     L L
Sbjct: 48  LTNARQRITGFSGGGSVHRNGVLNNAAMLLSSMDLTNPDECIEIYASILQKCRKLYNLRL 107

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           G Q+H  ++  G + C F+ + ++++Y +   +  A+ +F +M  ++V SWT+I+     
Sbjct: 108 GFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCG 167

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
            G  EET+ L+  MV+ GV+P+   F  +  ACS +     G+ ++     DY ++   +
Sbjct: 168 LGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNYRVGKDVY-----DYMLSIGFE 222

Query: 377 HYTC----LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN- 431
             +C    +LD+  + G +D A    + + F+ D   W  ++S        +   +  + 
Sbjct: 223 GNSCVKGSILDMFIKCGRMDIARRFFEEIEFK-DVFMWNIMVSGYTSKGEFKKALKCISD 281

Query: 432 -HLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462
             L  +KP+  +   ++S  YA +  ++  SK
Sbjct: 282 MKLSGVKPDQVTWNAIISG-YAQSGQFEEASK 312



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 82/176 (46%), Gaps = 9/176 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C++       K +H  II+ GL     + N+LID YG+C  +Q +  + + MPQRD 
Sbjct: 607 LPACSKLAALRQGKEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDL 666

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
           VSW  +++ Y         +++F     +  L+P+H  F +L+ AC   G    G    K
Sbjct: 667 VSWNVMISVYGMHGFGMDAVNLFQQFRTMG-LKPNHITFTNLLSACSHSGLIEEGWKYFK 725

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
            +   + + P  +     + +VD+ ++ G  N      + +  + N+  W ++L A
Sbjct: 726 MMKTEYAMDPAVEQ---YACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGA 778


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/590 (35%), Positives = 341/590 (57%), Gaps = 35/590 (5%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            + +HA +IK        L   LI  Y KC  +  A  +L+EMP+R+ VSW ++++ Y+Q 
Sbjct: 497  QRVHAHMIKTCYEPPVYLRTRLIVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQR 556

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                + + +F  ML +    P+ F FA+++ +C S    +LG+Q+H+  + + F     V
Sbjct: 557  GYASEALHLFVEML-MSGTAPNEFTFATVLTSCTSSSGFQLGRQIHSLVIKTSFESHIFV 615

Query: 143  KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
             SSL+DMYAK                               +G+  +A  +F+  P R++
Sbjct: 616  GSSLLDMYAK-------------------------------AGKICEARRVFDGLPERDV 644

Query: 203  FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
               TA++SG  Q   + +A   F  ++REG+   + +  +S++ A +  A L+ G+Q+H 
Sbjct: 645  VSCTAIISGYAQLGLDEEALDLFRRLQREGMR-SNYVTYASVLTALSGLAALDHGRQVHS 703

Query: 263  LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             V+       + + N+++DMY+KC  +  ++ IF  M  + V+SW +++VG ++HG   E
Sbjct: 704  HVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAMLVGYSKHGLGRE 763

Query: 323  TLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI-EDYGITPSLQHYTC 380
             + L+  M     VKP+ VTF+ ++  CSH G+  +G ++F  M+ +  G  P ++HY C
Sbjct: 764  AVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKDGFEPEIEHYGC 823

Query: 381  LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
            ++DL  R+G ++EA   IK MPFEP    W +LL AC+ H+N  +G  VA  LL ++ E+
Sbjct: 824  VVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFVARRLLEIESEN 883

Query: 441  PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
              +Y++LSN+YASA  W  V  VR+LM    V KEPG S+IE  +  H F+A + SHP K
Sbjct: 884  AGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTLHTFHASDRSHPRK 943

Query: 501  DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
            +E+F  + EL  ++K  GYVP+ S VL+D++ ++KE+ L  HSE+LA+A+GL+ +  GT 
Sbjct: 944  EEVFAKVRELSIKIKEAGYVPELSCVLYDVDDEQKEKILQGHSEKLALAFGLICTPGGTP 1003

Query: 561  LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +R++KNLR+C DCH   K +SR+  RE+ +RD  R+HH   G CSC D+W
Sbjct: 1004 VRIIKNLRICVDCHNFAKFLSRVYGREVSLRDKNRFHHIVGGTCSCGDYW 1053



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 103/193 (53%), Gaps = 3/193 (1%)

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
           + +EM  +G++ V+     S++  C +   +  G+++H  +I   YE  +++   ++ +Y
Sbjct: 464 ALLEMGIQGLE-VEFQGYDSVLTECISQTAIREGQRVHAHMIKTCYEPPVYLRTRLIVLY 522

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
            KC  +  A+ +   M  ++VVSWT++I G +Q G A E L L+ EM+ +G  PNE TF 
Sbjct: 523 NKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNEFTFA 582

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            ++ +C+       GR++  S++        +   + LLD+ +++G + EA  +   +P 
Sbjct: 583 TVLTSCTSSSGFQLGRQI-HSLVIKTSFESHIFVGSSLLDMYAKAGKICEARRVFDGLP- 640

Query: 404 EPDEPTWAALLSA 416
           E D  +  A++S 
Sbjct: 641 ERDVVSCTAIISG 653


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 207/557 (37%), Positives = 326/557 (58%), Gaps = 34/557 (6%)

Query: 57  AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116
           A    +E+P  + V   ++ + Y + NL   ++ +F  M+A D         AS+V    
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDS--------ASVVDEAA 54

Query: 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTA 176
           +L A          F  S    D  V +SL  + AK G   NA  V              
Sbjct: 55  ALVA----------FSASARVPDRGVTASLHALIAKIGFERNAGVV------------NT 92

Query: 177 MLSAYARSGRK--KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
           ML +YA+ G +  + A ++F+    R++  W ++++   Q+    +A   + +M   G  
Sbjct: 93  MLDSYAKGGSRDLEVARKVFDTME-RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGG 151

Query: 235 I-VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
           I  + + LS+++ ACA+   ++ GK IH  V+ +G E  +++  +IVDMY+KC  +  A 
Sbjct: 152 IKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMAS 211

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
             F +++ K+++SW+++I G   HG+ +E L ++ EM  +G++PN +TF+ ++ ACSH G
Sbjct: 212 RAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAG 271

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
           L+ +GR  + +M +++GI   ++HY C++DLL R+G LDEA +LIK M  +PD   W AL
Sbjct: 272 LLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGAL 331

Query: 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473
           LSAC+ H+N E+       L  L   +   Y+LLSN+YA A MW+ V ++R L+    ++
Sbjct: 332 LSACRIHKNVELAEMSVKRLFELDASNSGYYVLLSNIYAEAGMWKDVERIRLLVKTRRIE 391

Query: 474 KEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQK 533
           K PGYS  E     ++FY G+ SHP   EI+  L +L   M+  GYVP+T SVLHD++++
Sbjct: 392 KPPGYSSFELKGKIYLFYVGDKSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEE 451

Query: 534 EKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDA 593
           EKE  L  HSE+LAVA+ L+ SVP +V+ ++KNLRVC DCH  MK I++IT+REI++RD 
Sbjct: 452 EKESALRIHSEKLAVAFALMNSVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDL 511

Query: 594 TRYHHFKDGKCSCNDFW 610
            R+HHFKDG CSC D+W
Sbjct: 512 QRFHHFKDGLCSCRDYW 528



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 144/304 (47%), Gaps = 40/304 (13%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKC---DLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           +LHA I K+G  +   + NT++D+Y K    DL + A  + + M +RD VSW S++  Y 
Sbjct: 73  SLHALIAKIGFERNAGVVNTMLDSYAKGGSRDL-EVARKVFDTM-ERDVVSWNSMIALYA 130

Query: 81  QANLPQKTISIFSTMLAL-DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
           Q  +  + I ++S ML +   ++ +    ++++ AC   GA + GK +H   V     ++
Sbjct: 131 QNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKHIHNQVVRMGLEEN 190

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             V +S+VDMY+KCG    A   F  IK KN +SW+AM++ Y   GR ++A+EI      
Sbjct: 191 VYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEI------ 244

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                    F EM+R G+   + +   S++ AC++  +L+ G+ 
Sbjct: 245 -------------------------FTEMKRSGLR-PNYITFISVLAACSHAGLLDEGRY 278

Query: 260 -IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-DVVSWTSIIVGTAQH 317
             + +    G E+ +     +VD+  +   +  A  +   M+ K D   W +++     H
Sbjct: 279 WYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIH 338

Query: 318 GQAE 321
              E
Sbjct: 339 KNVE 342



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 102/205 (49%), Gaps = 10/205 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA      T K +H Q++++GL +   +  +++D Y KC  V+ A     ++ +++ 
Sbjct: 163 LLACAHAGAIQTGKHIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNI 222

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW++++T Y      Q+ + IF+ M     L+P++  F S++ AC   G    G+  + 
Sbjct: 223 LSWSAMITGYGMHGRGQEALEIFTEM-KRSGLRPNYITFISVLAACSHAGLLDEGRYWYN 281

Query: 130 CFVLSPFCDDDVVK--SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGR 186
             +   F  +  V+    +VD+  + G  + A ++   +K+K ++  W A+LSA     R
Sbjct: 282 A-MKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSAC----R 336

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSG 211
               +E+ E + V+ LF   A  SG
Sbjct: 337 IHKNVELAEMS-VKRLFELDASNSG 360


>gi|414865780|tpg|DAA44337.1| TPA: hypothetical protein ZEAMMB73_255594 [Zea mays]
          Length = 665

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/638 (34%), Positives = 343/638 (53%), Gaps = 50/638 (7%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPN----TLIDAYGKCDLVQYAHHLLEE-----MPQRDHVS 71
           +++  HA+++ L LH   P        LI AY  C  +  AH +LE        +   V 
Sbjct: 30  SLRAAHARLLVL-LHPSHPSAAHANVKLIQAYAACSALPLAHTVLESSSPDGRSRTTTVC 88

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDK-LQPDHFVFASLVKACGSLGATRLGKQVHAC 130
           +  ++ A   ++L +  + +F++M        PDH+ +   +K+C +     LG Q+H+ 
Sbjct: 89  FNVLIRALTASSLHRDALVLFASMRPRGPACFPDHYTYPLALKSCSASKDLLLGLQIHSA 148

Query: 131 FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
                   +  V  S + MY++CG P +A  VFD +  ++ VSW AM++ +AR G    A
Sbjct: 149 VAKLRLDRNVYVAHSAISMYSRCGRPEDAYRVFDGMPHRDVVSWNAMIAGFARVGLFDRA 208

Query: 191 MEIFEQAPV--------------------------------------RNLFLWTALVSGL 212
           +E+F+Q  V                                      + L  W A+++  
Sbjct: 209 IEVFKQFVVLQGSMPDAGTMAGILPAMGNAKPDDIRFVRRVFDNMQFKELISWNAMLAVY 268

Query: 213 VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC 272
             +   + A   F+ M ++ V+  D + L++++  C   +   +GK+IH ++        
Sbjct: 269 ANNEFHVKAVELFMLMEKDEVE-PDSITLATVLPPCGELSAFSVGKRIHEIIKRKNMCPN 327

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           L + NA++DMYA C  +  A++IF  M  +DV+SWTSII    +HG   E + L+++M+ 
Sbjct: 328 LLLENALMDMYASCGCLKDAREIFDLMSARDVISWTSIISAYGKHGHGREAVDLFEKMLG 387

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
            G++P+ + FV ++ ACSH GL+  G+  F SM   Y I P  +HYTC++DLL R+G ++
Sbjct: 388 QGLEPDSIAFVAVLAACSHAGLLADGKHYFDSMTSRYHIIPKAEHYTCMVDLLGRAGCIN 447

Query: 393 EAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           EA + I  M  EP+E  W ALL AC+ H N ++G   A++L SL PE    Y+LLSN+YA
Sbjct: 448 EAYDFITTMLIEPNERVWGALLQACRIHSNMDIGLVAADNLFSLVPEQTGYYVLLSNMYA 507

Query: 453 SAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDA 512
            A  W  V+ VR +M    +KK PG S +E G   H F+ G+  HP  + I+  L EL  
Sbjct: 508 RAGRWADVTSVRSVMVNKGIKKFPGTSIVELGDQVHTFHIGDRCHPQSEMIYHKLDELLG 567

Query: 513 EMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGD 572
           +++  GY P+  + LHD+E+++KE  L  HSE+LA+A+ LL + PGT++RV  NLR C D
Sbjct: 568 KIRGMGYNPEVEATLHDVEEEDKEDHLSVHSEKLAIAFLLLNTSPGTIIRVTMNLRTCSD 627

Query: 573 CHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           CH+  K+IS IT REIV++D  R HH   G CSC D+W
Sbjct: 628 CHLAAKLISIITCREIVLKDTNRIHHIVQGVCSCGDYW 665


>gi|225457427|ref|XP_002282084.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 643

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/625 (34%), Positives = 344/625 (55%), Gaps = 36/625 (5%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLI--DAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
            +K +HA + K GL     +   L+   A    D + YA  L    P  D     +++  
Sbjct: 20  NLKQVHAYVCKTGLDTDPIIAGKLLLHSAVSVPDALDYARRLFLHFPNPDVFMHNTLIRG 79

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
             +++ PQ ++  F  M        D F FA L+KA  S  +   G Q+H   ++     
Sbjct: 80  LAESDTPQNSLITFVEMRRRLTAPLDSFSFAFLLKAAASYRSLESGIQLHCQAIVHGLDT 139

Query: 139 DDVVKSSLVDMYAKCGL-------------PN------------------NARAVFDSIK 167
              V ++LV MY++CG              PN                   A  +F+ + 
Sbjct: 140 HLFVGTTLVSMYSECGFVAFAKKVFEEMFEPNVVAWNAVVTACFRCGDVKGADMMFNRMP 199

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            +N  SW  ML+ Y ++G  + A ++F + PV++   W+ ++ G   +    +AF  F E
Sbjct: 200 FRNLTSWNVMLAGYTKAGELELARKLFLEMPVKDDVSWSTMIVGFAHNGFFYEAFGFFRE 259

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           +++ G+   + + L+  + ACA+   +E GK +HG +   G+   + ++NA++D Y+KC 
Sbjct: 260 LQQVGMR-PNEVSLTGALSACADAGAIEFGKILHGFIEKSGFLWMVSVNNALLDTYSKCG 318

Query: 288 DIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
           ++  A+ +F RM  ++ +VSWTS+I G A HG  EE + L+ EM  +G++P+ + F+ ++
Sbjct: 319 NVGMARLVFERMPEKRSIVSWTSMIAGLAMHGYGEEAIQLFHEMEESGIRPDGIAFISIL 378

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
           YACSH GL+ KG + F  M + Y I P+++HY C++DL  R+G LD+A   I  MP  P 
Sbjct: 379 YACSHAGLIEKGYEYFYKMKDIYNIEPAIEHYGCMVDLYGRAGQLDKAYEFIIHMPVLPT 438

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKL 466
              W  LL AC  H N ++  RV   L  L P +   ++LLSN+YA A  W+ V+ VR+ 
Sbjct: 439 AIIWRTLLGACSIHGNVKLAERVKERLSELDPNNSGDHVLLSNIYAVAGKWKDVAAVRRS 498

Query: 467 MSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG-YVPDTSS 525
           M+   + K PG+S IE  K  + F AGE  + + +E +E L E+  +++  G Y+P+  S
Sbjct: 499 MTDQRMNKTPGWSMIEVDKIMYSFVAGEVQNSITEEAYEKLKEIMLKLRVEGCYIPEVGS 558

Query: 526 VLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITK 585
           VLHD+E +EKE  +  HSE+LAVA+G+ +   G+++R+VKNLRVC DCH VMK+IS++  
Sbjct: 559 VLHDIEDEEKEDSVSRHSEKLAVAFGIARLCKGSIIRIVKNLRVCRDCHTVMKLISKVYG 618

Query: 586 REIVVRDATRYHHFKDGKCSCNDFW 610
            EIVVRD +R+H FK G CSC D+W
Sbjct: 619 LEIVVRDRSRFHSFKTGSCSCRDYW 643


>gi|15223594|ref|NP_176062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75173061|sp|Q9FXB9.1|PPR84_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g56690, mitochondrial; Flags: Precursor
 gi|9954744|gb|AAG09095.1|AC009323_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332195302|gb|AEE33423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 219/623 (35%), Positives = 352/623 (56%), Gaps = 55/623 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLA---- 97
           N L+  Y K  ++  A ++ E MP+R+ VSW +++  Y Q  +  +  S+F  M      
Sbjct: 83  NGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEV 142

Query: 98  --------------LDKLQP--DHFVFASLVKACGSLGA-TRLGKQVHACFVLSPFCDDD 140
                         +DK +   D      +V +   +G   R G+   A  +     + +
Sbjct: 143 SWTVMFGGLIDDGRIDKARKLYDMMPVKDVVASTNMIGGLCREGRVDEARLIFDEMRERN 202

Query: 141 VVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
           VV  ++++  Y +    + AR +F+ +  K  VSWT+ML  Y  SGR +DA E FE  P+
Sbjct: 203 VVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPM 262

Query: 200 RNLFLWTALVSG---------------LVQSRN----------------EIDAFYSFIEM 228
           + +    A++ G               L++ R+                E++A   F +M
Sbjct: 263 KPVIACNAMIVGFGEVGEISKARRVFDLMEDRDNATWRGMIKAYERKGFELEALDLFAQM 322

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
           +++GV    P ++S I+  CA  A L+ G+Q+H  ++   ++  +++++ ++ MY KC +
Sbjct: 323 QKQGVRPSFPSLIS-ILSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGE 381

Query: 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
           ++ AK +F R   KD++ W SII G A HG  EE L ++ EM S+G  PN+VT + ++ A
Sbjct: 382 LVKAKLVFDRFSSKDIIMWNSIISGYASHGLGEEALKIFHEMPSSGTMPNKVTLIAILTA 441

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           CS+ G + +G ++F+SM   + +TP+++HY+C +D+L R+G +D+A  LI++M  +PD  
Sbjct: 442 CSYAGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDAT 501

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
            W ALL ACK H   ++    A  L   +P++  +Y+LLS++ AS + W  V+ VRK M 
Sbjct: 502 VWGALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMR 561

Query: 469 VMEVKKEPGYSYIEFGKGSHIFY-AGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
              V K PG S+IE GK  H+F   G  +HP +  I  +L + D  ++  GY PD S VL
Sbjct: 562 TNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVL 621

Query: 528 HDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
           HD++++EK   L  HSERLAVAYGLLK   G  +RV+KNLRVCGDCH  +K+IS++T+RE
Sbjct: 622 HDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTERE 681

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           I++RDA R+HHF +G+CSC D+W
Sbjct: 682 IILRDANRFHHFNNGECSCRDYW 704



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/260 (26%), Positives = 124/260 (47%), Gaps = 28/260 (10%)

Query: 151 AKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVS 210
           ++ G  N AR  FDS++ K   SW +++S Y  +G  K+A ++F++   RN+  W  LVS
Sbjct: 28  SRIGKINEARKFFDSLQFKAIGSWNSIVSGYFSNGLPKEARQLFDEMSERNVVSWNGLVS 87

Query: 211 GLVQSRNEIDAFYSFIEMRREGV----DIVDPLVLSSIVGACAN-FAVLELGKQIHGLVI 265
           G +++R  ++A   F  M    V     +V   +   +VG   + F  +    ++   V+
Sbjct: 88  GYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGEAESLFWRMPERNEVSWTVM 147

Query: 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA 325
             G      I +  +D          A+ ++  M  KDVV+ T++I G  + G+ +E   
Sbjct: 148 FGG-----LIDDGRID---------KARKLYDMMPVKDVVASTNMIGGLCREGRVDEARL 193

Query: 326 LYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385
           ++DEM     + N VT+  +I        V   RKLF+ M E   ++     +T +L   
Sbjct: 194 IFDEM----RERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVS-----WTSMLLGY 244

Query: 386 SRSGHLDEAENLIKAMPFEP 405
           + SG +++AE   + MP +P
Sbjct: 245 TLSGRIEDAEEFFEVMPMKP 264



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 100/465 (21%), Positives = 180/465 (38%), Gaps = 86/465 (18%)

Query: 71  SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC 130
           SW SI++ Y    LP++   +F  M                                   
Sbjct: 50  SWNSIVSGYFSNGLPKEARQLFDEM----------------------------------- 74

Query: 131 FVLSPFCDDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                  + +VV  + LV  Y K  +   AR VF+ +  +N VSWTAM+  Y + G   +
Sbjct: 75  ------SERNVVSWNGLVSGYIKNRMIVEARNVFELMPERNVVSWTAMVKGYMQEGMVGE 128

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F + P RN   WT +  GL+     ID      +M    + + D +  ++++G   
Sbjct: 129 AESLFWRMPERNEVSWTVMFGGLIDD-GRIDKARKLYDM----MPVKDVVASTNMIGGLC 183

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               ++  +    L+     E  +     ++  Y + + +  A+ +F  M  K  VSWTS
Sbjct: 184 REGRVDEAR----LIFDEMRERNVVTWTTMITGYRQNNRVDVARKLFEVMPEKTEVSWTS 239

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +++G    G+ E+    ++ M    V       VG       VG + K R++F  M +  
Sbjct: 240 MLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVGF----GEVGEISKARRVFDLMEDRD 295

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP---FEPDEPTWAALLSACKHHRNTEMG 426
             T     +  ++    R G   EA +L   M      P  P+  ++LS C    + + G
Sbjct: 296 NAT-----WRGMIKAYERKGFELEALDLFAQMQKQGVRPSFPSLISILSVCATLASLQYG 350

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
            +V  HL+  + +D        +VY ++ +     K  +L+    V       +  F   
Sbjct: 351 RQVHAHLVRCQFDD--------DVYVASVLMTMYVKCGELVKAKLV-------FDRFSSK 395

Query: 487 SHIFY----AGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
             I +    +G  SH L +E  ++      EM   G +P+  +++
Sbjct: 396 DIIMWNSIISGYASHGLGEEALKIF----HEMPSSGTMPNKVTLI 436



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 86/196 (43%), Gaps = 9/196 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VCA        + +HA +++        + + L+  Y KC  +  A  + +    +D 
Sbjct: 338 LSVCATLASLQYGRQVHAHLVRCQFDDDVYVASVLMTMYVKCGELVKAKLVFDRFSSKDI 397

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           + W SI++ Y    L ++ + IF  M +   + P+     +++ AC   G    G ++  
Sbjct: 398 IMWNSIISGYASHGLGEEALKIFHEMPSSGTM-PNKVTLIAILTACSYAGKLEEGLEIFE 456

Query: 130 CFVLSPFCDDDVVK--SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGR 186
             + S FC    V+  S  VDM  + G  + A  + +S+ +K ++  W A+L A     R
Sbjct: 457 S-MESKFCVTPTVEHYSCTVDMLGRAGQVDKAMELIESMTIKPDATVWGALLGACKTHSR 515

Query: 187 ----KKDAMEIFEQAP 198
               +  A ++FE  P
Sbjct: 516 LDLAEVAAKKLFENEP 531


>gi|302141697|emb|CBI18900.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/587 (36%), Positives = 328/587 (55%), Gaps = 32/587 (5%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
            +HA++IK   +  G + + L+  Y K    + A  L +EMP +D VSW S+++  +   
Sbjct: 83  AIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRG 142

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
                ++ F  M      QP+     S+V AC  +GA   GK +H   V         V 
Sbjct: 143 YLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVV 202

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           +SL++MY K G  + A  +F+ + +++ VSW +M+  +  +G  +  M++F      NL 
Sbjct: 203 NSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLF------NL- 255

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
                                   M+R G++  D   + +++ AC +  +    + IH  
Sbjct: 256 ------------------------MKRAGIN-PDQATMVALLRACTDTGLGRQAESIHAY 290

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           +   G+ + + I+ A++++YAK   + A++DIF  ++ +D ++WT+++ G A H    E 
Sbjct: 291 IHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREA 350

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           + L+D MV  GV+ + VTF  L+ ACSH GLV +G+K F+ M E Y + P L HY+C++D
Sbjct: 351 IKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVD 410

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           LL RSG L++A  LIK+MP EP    W ALL AC+ + N E+G  VA  LLSL P D  +
Sbjct: 411 LLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRN 470

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
           YI+LSN+Y++A +W+  SKVR LM    + + PG S+IE G   H F  G+  HP  DEI
Sbjct: 471 YIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEI 530

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
              L EL  +++  G  P T  VLHD++++ K   +  HSE+LA+A+GLL +  G  L +
Sbjct: 531 HTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLII 590

Query: 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            KNLR+CGDCH   K  S + KR I++RD+ R+HHF DG CSC D+W
Sbjct: 591 TKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 637



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 154/326 (47%), Gaps = 36/326 (11%)

Query: 98  LDKLQPDHFVFA---SLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
           L +L P   V++   SLV A  S  +      +HA  + S    D  +   LV MY K G
Sbjct: 52  LFQLSPPFQVYSIVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLG 111

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
              +A+ +FD +  K+ VSW +++S  +  G                 +L   L      
Sbjct: 112 YDEDAQRLFDEMPNKDLVSWNSLMSGLSGRG-----------------YLGACL------ 148

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF 274
                    +F  MR E     + + L S+V ACA+   L+ GK +HG+V+ LG      
Sbjct: 149 --------NAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAK 200

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
           + N++++MY K   + AA  +F  M  + +VSW S++V    +G AE+ + L++ M  AG
Sbjct: 201 VVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAG 260

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
           + P++ T V L+ AC+  GL G+  +   + I   G    +   T LL+L ++ G L+ +
Sbjct: 261 INPDQATMVALLRACTDTGL-GRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNAS 319

Query: 395 ENLIKAMPFEPDEPTWAALLSACKHH 420
           E++ + +  + D   W A+L+    H
Sbjct: 320 EDIFEEIK-DRDRIAWTAMLAGYAVH 344



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 120/237 (50%), Gaps = 33/237 (13%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K+LH  ++KLG+     + N+LI+ YGK   +  A  L EEMP R  VSW S++  +N  
Sbjct: 184 KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHN 243

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +K + +F+ M     + PD     +L++AC   G  R  + +HA      F  D ++
Sbjct: 244 GYAEKGMDLFNLM-KRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIII 302

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+++YAK G  N +  +F+ IK ++ ++WTAML+ YA     ++A+++F+       
Sbjct: 303 ATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDL------ 356

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                    M +EGV+ VD +  + ++ AC++  ++E GK+
Sbjct: 357 -------------------------MVKEGVE-VDHVTFTHLLSACSHSGLVEEGKK 387



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 5/211 (2%)

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
           ++ S+V A ++   +     IH  VI     S  FI + +V MY K      A+ +F  M
Sbjct: 64  IVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEM 123

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKG 358
             KD+VSW S++ G +  G     L  +  M   +G +PNEVT + ++ AC+ +G + +G
Sbjct: 124 PNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEG 183

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
           + L   +++  G++   +    L+++  + G LD A  L + MP      +W +++    
Sbjct: 184 KSLHGVVVK-LGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSMVVIHN 241

Query: 419 HHRNTEMGTRVANHL--LSLKPEDPSSYILL 447
           H+   E G  + N +    + P+  +   LL
Sbjct: 242 HNGYAEKGMDLFNLMKRAGINPDQATMVALL 272



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 9/192 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C    +    +++HA I + G +    +   L++ Y K   +  +  + EE+  RD 
Sbjct: 272 LRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDR 331

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ--- 126
           ++W ++L  Y      ++ I +F  M+  + ++ DH  F  L+ AC   G    GK+   
Sbjct: 332 IAWTAMLAGYAVHACGREAIKLFDLMVK-EGVEVDHVTFTHLLSACSHSGLVEEGKKYFE 390

Query: 127 -VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARS 184
            +   + + P  D     S +VD+  + G   +A  +  S+ ++ S   W A+L A    
Sbjct: 391 IMSEVYRVEPRLDH---YSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVY 447

Query: 185 GRKKDAMEIFEQ 196
           G  +   E+ EQ
Sbjct: 448 GNVELGKEVAEQ 459


>gi|297794613|ref|XP_002865191.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311026|gb|EFH41450.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/570 (36%), Positives = 330/570 (57%), Gaps = 36/570 (6%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N ++  Y +   V  A  L ++MP+++ +SW +++   +Q     + +++F  ML    +
Sbjct: 163 NAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRC-CI 221

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +     F  ++ AC +  A  +G QVH   + S F  ++ V +SL+ +YA C        
Sbjct: 222 KSTSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASLITLYANCK------- 274

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
                                   R +D+ ++F +     + +WTAL+SG   +R   DA
Sbjct: 275 ------------------------RTEDSRKVFGEMVHEKVAVWTALLSGYSLNRKHEDA 310

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F EM R  + + +    +S + +C+    L+ GK+IHG+ + LG  +  F+ N++V 
Sbjct: 311 LNVFSEMIRNSI-LPNQSTFASGLNSCSALGTLDWGKEIHGVAVKLGLGTVAFVGNSLVV 369

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY+   ++  A  +F  + +K +VSW SIIVG AQHG+ +    ++ +M+    +P+E+T
Sbjct: 370 MYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEIT 429

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYG-ITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           F GL+ ACSH G + KGRKLF  +      I   +QHYTC++D+L R G L EAE LI++
Sbjct: 430 FTGLLSACSHCGFLQKGRKLFYYISSGLNHIDRKIQHYTCMVDILGRCGELKEAEKLIES 489

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           M  +P+E  W ALLSAC+ H + + G + A  + +L  +  ++Y+LLSN+YASA  W  V
Sbjct: 490 MVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSSV 549

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
           SK+R  M    + K+PG S++      H F++G+  H L+  IFE L  L  ++K  GYV
Sbjct: 550 SKLRVKMKQKGIMKKPGSSWVVIRGKKHEFFSGDRPHCLR--IFEKLEFLREKLKELGYV 607

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           PD  S LHD+E ++KE  L++HSERLA+A+GL+ +V G+ + V+KNLRVC DCH V+K+I
Sbjct: 608 PDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSTVTVMKNLRVCEDCHTVIKLI 667

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           SR+   +IV+RD TR+HHFK+G CSC D+W
Sbjct: 668 SRVVGCKIVLRDPTRFHHFKNGMCSCGDYW 697



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/428 (21%), Positives = 195/428 (45%), Gaps = 45/428 (10%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   +I  Y + + +  A +L +EMP RD VSW S+++   +       + +F  M    
Sbjct: 68  LYTKMISGYTRSNRLVDALNLFDEMPLRDVVSWNSMISGCVECGDIDTAVKMFDEM---- 123

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
              P+  V +                 V+ CF                    + G+ + A
Sbjct: 124 ---PERSVVS-------------WTAMVNGCF--------------------RFGMVDQA 147

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
             +F  + +K+  +W AM+  Y + G+  DA+++F+Q P +N+  WT ++ GL Q+    
Sbjct: 148 ERLFCQMPVKDIAAWNAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSG 207

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           +A   F  M R  +        + ++ ACAN     +G Q+HG +I  G+    +++ ++
Sbjct: 208 EALNLFKNMLRCCIKSTSR-TFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTASL 266

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           + +YA C     ++ +FG M  + V  WT+++ G + + + E+ L ++ EM+   + PN+
Sbjct: 267 ITLYANCKRTEDSRKVFGEMVHEKVAVWTALLSGYSLNRKHEDALNVFSEMIRNSILPNQ 326

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
            TF   + +CS +G +  G+++    ++  G+         L+ + S SG++++A ++  
Sbjct: 327 STFASGLNSCSALGTLDWGKEIHGVAVK-LGLGTVAFVGNSLVVMYSDSGNVNDAVSVFI 385

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
            + F+    +W +++  C  H   +    +   ++ L  E     I  + + ++ +    
Sbjct: 386 EI-FKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDE--ITFTGLLSACSHCGF 442

Query: 460 VSKVRKLM 467
           + K RKL 
Sbjct: 443 LQKGRKLF 450



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 133/283 (46%), Gaps = 21/283 (7%)

Query: 157 NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
           + AR VFD +   +   +T M+S Y RS R  DA+ +F++ P+R++  W +++SG V+  
Sbjct: 52  DEAREVFDQVPSPHVSLYTKMISGYTRSNRLVDALNLFDEMPLRDVVSWNSMISGCVECG 111

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
           +   A   F EM    V     +  +++V  C  F +++   Q   L   +  +  +   
Sbjct: 112 DIDTAVKMFDEMPERSV-----VSWTAMVNGCFRFGMVD---QAERLFCQMPVKD-IAAW 162

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
           NA+V  Y +   +  A  +F +M RK+V+SWT++I G  Q+ ++ E L L+  M+   +K
Sbjct: 163 NAMVHGYLQFGKVDDALKLFKQMPRKNVISWTTMICGLDQNERSGEALNLFKNMLRCCIK 222

Query: 337 PNEVTFVGLIYACS-----HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
               TF  +I AC+     H+G    G  +    + +  +T S      L+ L +     
Sbjct: 223 STSRTFTCVITACANAPAFHMGTQVHGFIIKSGFLYEEYVTAS------LITLYANCKRT 276

Query: 392 DEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           +++  +   M  E     W ALLS    +R  E    V + ++
Sbjct: 277 EDSRKVFGEMVHEK-VAVWTALLSGYSLNRKHEDALNVFSEMI 318



 Score = 92.8 bits (229), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 138/336 (41%), Gaps = 65/336 (19%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  IIK G      +  +LI  Y  C   + +  +  EM       W ++L+ Y+    
Sbjct: 247 VHGFIIKSGFLYEEYVTASLITLYANCKRTEDSRKVFGEMVHEKVAVWTALLSGYSLNRK 306

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            +  +++FS M+  + + P+   FAS + +C +LG    GK++H   V         V +
Sbjct: 307 HEDALNVFSEMIR-NSILPNQSTFASGLNSCSALGTLDWGKEIHGVAVKLGLGTVAFVGN 365

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SLV MY+  G  N+A +VF  I  K+ VSW +++   A+ GR K A  IF Q        
Sbjct: 366 SLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQ-------- 417

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                                I + +E     D +  + ++ AC++   L+ G+++    
Sbjct: 418 --------------------MIRLNKEP----DEITFTGLLSACSHCGFLQKGRKLF--- 450

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
                    +IS+ +  +  K        DI GR                   G+ +E  
Sbjct: 451 --------YYISSGLNHIDRKIQHYTCMVDILGRC------------------GELKEAE 484

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            L + MV   VKPNE+ ++ L+ AC     V +G K
Sbjct: 485 KLIESMV---VKPNEMVWLALLSACRMHSDVDRGEK 517



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 8/163 (4%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   +KLGL     + N+L+  Y     V  A  +  E+ ++  VSW SI+    Q 
Sbjct: 346 KEIHGVAVKLGLGTVAFVGNSLVVMYSDSGNVNDAVSVFIEIFKKSIVSWNSIIVGCAQH 405

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD--DD 140
              +    IF  M+ L+K +PD   F  L+ AC   G  + G+++   + +S   +  D 
Sbjct: 406 GRGKWAFVIFGQMIRLNK-EPDEITFTGLLSACSHCGFLQKGRKLF--YYISSGLNHIDR 462

Query: 141 VVK--SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
            ++  + +VD+  +CG    A  + +S+ +K N + W A+LSA
Sbjct: 463 KIQHYTCMVDILGRCGELKEAEKLIESMVVKPNEMVWLALLSA 505


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/588 (36%), Positives = 323/588 (54%), Gaps = 33/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHA+ +KL  H    +  +L+  Y KC L+  A  + +EMP    V W +++TAY  A
Sbjct: 91  EQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDA 150

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ + +     A + ++PD F    ++ AC  +     G+ V              V
Sbjct: 151 GDLREAVHVARNAFA-NGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFV 209

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++ VD+Y KCG    AR VFD +                   R KDA+           
Sbjct: 210 ATAAVDLYVKCGEMAKAREVFDKM-------------------RHKDAVA---------- 240

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W A+V G   + +  +A   F+ M+ EG+   D   ++  + AC     L+LG+Q   
Sbjct: 241 --WGAMVGGYASNGHPREALDLFLAMQAEGMK-PDCYAVAGALSACTRLGALDLGRQAIR 297

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           +V    +     +  A++DMYAKC   + A  +F +MR+KD++ W ++I+G    G  + 
Sbjct: 298 MVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI 357

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
             AL  +M  +GVK N+ TF+GL+ +C+H GL+  GR+ F +M + Y I+P ++HY C++
Sbjct: 358 AFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMV 417

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLLSR+G L EA  L+  MP   +     ALL  CK HRNTE+   V   L+ L+P +  
Sbjct: 418 DLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSG 477

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y++LSN+Y++   W+  +K+R  M    V+K P  S++EF    H F  G+ SHPL D+
Sbjct: 478 NYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQ 537

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I++ L EL  EMK  GY P T  V+ D+E +EKE  L  HSE+LA+A+ LL + PG  +R
Sbjct: 538 IYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIR 597

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V KNLRVC DCH  +K++SRIT REI+VRD  R+H F+DG CSCND+W
Sbjct: 598 VTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CAR     T +T+     + G+ Q   +    +D Y KC  +  A  + ++M  +D 
Sbjct: 179 LTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDA 238

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W +++  Y     P++ + +F  M A + ++PD +  A  + AC  LGA  LG+Q   
Sbjct: 239 VAWGAMVGGYASNGHPREALDLFLAMQA-EGMKPDCYAVAGALSACTRLGALDLGRQAIR 297

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 F D+ V+ ++L+DMYAKCG    A  VF  ++ K+ + W AM+     +G +K 
Sbjct: 298 MVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI 357

Query: 190 AMEIFEQ 196
           A  +  Q
Sbjct: 358 AFALVGQ 364



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 85/188 (45%), Gaps = 4/188 (2%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L  G+Q+H   + L   +   +  +++ +YAKC  +  A+ +F  M     V WT++I  
Sbjct: 87  LRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITA 146

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
               G   E + +     + G++P+  T V ++ AC+ +  +  G  ++++  E  G+  
Sbjct: 147 YMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAA-EQEGVAQ 205

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS--ACKHHRNTEMGTRVAN 431
           S+   T  +DL  + G + +A  +   M  + D   W A++   A   H    +   +A 
Sbjct: 206 SVFVATAAVDLYVKCGEMAKAREVFDKMRHK-DAVAWGAMVGGYASNGHPREALDLFLAM 264

Query: 432 HLLSLKPE 439
               +KP+
Sbjct: 265 QAEGMKPD 272


>gi|356570490|ref|XP_003553418.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Glycine max]
          Length = 582

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 216/587 (36%), Positives = 331/587 (56%), Gaps = 34/587 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LH Q+IKLG      + + LI+ Y K +L   +  L +  P +   +W+S+++++ Q +L
Sbjct: 29  LHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVISSFAQNDL 88

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P   +  F  ML    L PD     +  K+  +L +  L   +HA  + +    D  V S
Sbjct: 89  PLPALRFFRRMLR-HGLLPDDHTLPTAAKSVAALSSLPLALSLHALSLKTAHHHDVFVGS 147

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SLVD YAKCG  N AR                               ++F++ P +N+  
Sbjct: 148 SLVDTYAKCGDVNLAR-------------------------------KVFDEMPHKNVVS 176

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLSSIVGACANFAVLELGKQIHGL 263
           W+ ++ G  Q   + +A   F     +  DI V+   LSS++  C+   + ELGKQ+HGL
Sbjct: 177 WSGMIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGKQVHGL 236

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
                ++S  F++++++ +Y+KC  +     +F  ++ +++  W ++++  AQH     T
Sbjct: 237 CFKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVRNLGMWNAMLIACAQHAHTGRT 296

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
             L++EM   GVKPN +TF+ L+YACSH GLV KG   F  +++++GI P  QHY  L+D
Sbjct: 297 FELFEEMERVGVKPNFITFLCLLYACSHAGLVEKGEHCF-GLMKEHGIEPGSQHYATLVD 355

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           LL R+G L+EA  +IK MP +P E  W ALL+ C+ H NTE+ + VA+ +  +       
Sbjct: 356 LLGRAGKLEEAVLVIKEMPMQPTESVWGALLTGCRIHGNTELASFVADKVFEMGAVSSGI 415

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
            +LLSN YA+A  W+  ++ RK+M    +KKE G S++E G   H F AG+ SH    EI
Sbjct: 416 QVLLSNAYAAAGRWEEAARARKMMRDQGIKKETGLSWVEEGNRVHTFAAGDRSHGKTREI 475

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
           +E L EL  EM + GYV DTS VL +++  EK + + +HSERLA+A+GL+   P   +RV
Sbjct: 476 YEKLEELGEEMAKAGYVADTSFVLKEVDGDEKSQTIRYHSERLAIAFGLITFPPEWPIRV 535

Query: 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +KNLRVCGDCH  +K IS+ T R I+VRD  R+H F+DGKC+C D+W
Sbjct: 536 MKNLRVCGDCHTAIKFISKCTGRVIIVRDNNRFHRFEDGKCTCGDYW 582



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 74/308 (24%), Positives = 139/308 (45%), Gaps = 44/308 (14%)

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
           R G Q+H   +   F    +V   L++ Y+K  LP+++  +FDS   K++ +W++++S++
Sbjct: 24  RKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVISSF 83

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
           A++     A+  F +                               M R G+ + D   L
Sbjct: 84  AQNDLPLPALRFFRR-------------------------------MLRHGL-LPDDHTL 111

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
            +   + A  + L L   +H L +   +   +F+ +++VD YAKC D+  A+ +F  M  
Sbjct: 112 PTAAKSVAALSSLPLALSLHALSLKTAHHHDVFVGSSLVDTYAKCGDVNLARKVFDEMPH 171

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSA--GVKPNEVTFVGLIYACSHVGLVGKGR 359
           K+VVSW+ +I G +Q G  EE L L+   +     ++ N+ T   ++  CS   L   G+
Sbjct: 172 KNVVSWSGMIYGYSQMGLDEEALNLFKRALEQDYDIRVNDFTLSSVLRVCSASTLFELGK 231

Query: 360 KL----FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
           ++    FK+  +      S      L+ L S+ G ++    + + +    +   W A+L 
Sbjct: 232 QVHGLCFKTSFDSSCFVAS-----SLISLYSKCGVVEGGYKVFEEVKVR-NLGMWNAMLI 285

Query: 416 ACKHHRNT 423
           AC  H +T
Sbjct: 286 ACAQHAHT 293



 Score = 52.8 bits (125), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 6/195 (3%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LRVC+   +    K +H    K        + ++LI  Y KC +V+  + + EE+  R+ 
Sbjct: 218 LRVCSASTLFELGKQVHGLCFKTSFDSSCFVASSLISLYSKCGVVEGGYKVFEEVKVRNL 277

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
             W ++L A  Q     +T  +F  M  +  ++P+   F  L+ AC   G    G+    
Sbjct: 278 GMWNAMLIACAQHAHTGRTFELFEEMERVG-VKPNFITFLCLLYACSHAGLVEKGEHCFG 336

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGRKK 188
                         ++LVD+  + G    A  V   + ++ + S W A+L+     G  +
Sbjct: 337 LMKEHGIEPGSQHYATLVDLLGRAGKLEEAVLVIKEMPMQPTESVWGALLTGCRIHGNTE 396

Query: 189 DAM----EIFEQAPV 199
            A     ++FE   V
Sbjct: 397 LASFVADKVFEMGAV 411



 Score = 47.0 bits (110), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 46/89 (51%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L  G Q+HG VI LG+E+   + + +++ Y+K +   ++  +F     K   +W+S+I  
Sbjct: 23  LRKGLQLHGQVIKLGFEAIPLVCHHLINFYSKTNLPHSSLKLFDSFPHKSATTWSSVISS 82

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTF 342
            AQ+      L  +  M+  G+ P++ T 
Sbjct: 83  FAQNDLPLPALRFFRRMLRHGLLPDDHTL 111


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/597 (35%), Positives = 345/597 (57%), Gaps = 14/597 (2%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-------DLVQYAHHLLEEMPQRDHVSWAS 74
           +K +HA+++K GL Q     +  I  +  C       D + YA  + +   + D   W  
Sbjct: 59  LKQIHARMLKTGLIQ----DSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNL 114

Query: 75  ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134
           ++  ++ ++ P++++ ++  ML       + + F SL+KAC +L A     Q+HA     
Sbjct: 115 MIRGFSCSDEPERSLLLYQRMLCCSAPH-NAYTFPSLLKACSNLSALEETTQIHAQITKL 173

Query: 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
            + +D    +SL++ YA  G    A  +FD I   ++VSW +++  YA++G+   A+ +F
Sbjct: 174 GYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLF 233

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
            +   +N   WT ++SG VQ+    +A   F EM+   V+  D + L++ + ACA    L
Sbjct: 234 RKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVE-PDNVSLANALSACAQLGAL 292

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
           E GK IH  +          +   ++DMYAKC D+  A ++F  ++RK V +WT++I G 
Sbjct: 293 EQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGY 352

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
           A HG   E ++ + EM   G+KPN +TF  ++ ACS+ GLV +G+ +F +M  DY + P+
Sbjct: 353 AYHGHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPT 412

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           ++HY C++DLLSR+G LDEA+  I+ MP +P+   W ALL AC+ H+N E+G  +   L+
Sbjct: 413 IEHYGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILI 472

Query: 435 SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGE 494
           ++ P     Y+  +N++A    W   ++ R+LM    V K PG S I     +H F AG+
Sbjct: 473 AIDPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGD 532

Query: 495 TSHPLKDEIFELLTELDAEMKRRGYVPD-TSSVLHDMEQKEKERQLFWHSERLAVAYGLL 553
            SHP  ++I      +  +++  GYVP+    +L  ++  E+E  +  HSE+LA+ YGL+
Sbjct: 533 RSHPEIEKIQSKWKIMRRKLEENGYVPELEDMLLDLVDDDERETIVHQHSEKLAITYGLI 592

Query: 554 KSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K+ PGT +R++KNLRVC DCH V K+IS+I KR+IV+RD TR+HHF+DGKCSC D+W
Sbjct: 593 KTKPGTTIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGDYW 649



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 145/345 (42%), Gaps = 66/345 (19%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+          +HAQI KLG        N+LI++Y      + AH L + +P+ D 
Sbjct: 151 LKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDA 210

Query: 70  VSWASI-------------------------------LTAYNQANLPQKTISIFSTMLAL 98
           VSW S+                               ++ Y QA + ++ + +F  M   
Sbjct: 211 VSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNS 270

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           D ++PD+   A+ + AC  LGA   GK +H+    +    D V+   L+DMYAKCG    
Sbjct: 271 D-VEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGE 329

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A  VF +I+ K+  +WTA++S YA  G  ++A+                           
Sbjct: 330 ALEVFKNIQRKSVQAWTALISGYAYHGHGREAIS-------------------------- 363

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI-HGLVIALGYESCLFISN 277
                 F+EM++ G+   + +  ++++ AC+   ++E GK I + +      +  +    
Sbjct: 364 -----KFMEMQKMGIK-PNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEHYG 417

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRK-DVVSWTSIIVGTAQHGQAE 321
            +VD+ ++   +  AK     M  K + V W +++     H   E
Sbjct: 418 CVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIE 462


>gi|125532805|gb|EAY79370.1| hypothetical protein OsI_34497 [Oryza sativa Indica Group]
          Length = 681

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/569 (36%), Positives = 324/569 (56%), Gaps = 34/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           ++L+  Y +   +  A  + + MP+RD V+W++++  +  A  P   I ++  M   D +
Sbjct: 147 SSLLHLYARWGAMGDAVKVFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMRE-DGV 205

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           + D  V   +++AC +    R+G  VH   +      D V  +SLVDMYAK         
Sbjct: 206 KGDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVDMYAK--------- 256

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
                                 +G    A  +F     RN   W+A++SG  Q+    +A
Sbjct: 257 ----------------------NGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEA 294

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M+  G+   D   L S + AC+N   L+LG+ +HG ++     +C+ +  A +D
Sbjct: 295 LRLFRNMQASGIQ-PDSGALVSALLACSNIGFLKLGRSVHGFIVRRFDFNCI-LGTAAID 352

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY+KC  + +A+ +F  +  +D++ W ++I     HG+ ++ L L+ EM   G++P+  T
Sbjct: 353 MYSKCGSLASAQMLFNMISDRDLILWNAMIACCGAHGRGQDALTLFQEMNETGMRPDHAT 412

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F  L+ A SH GLV +G+  F  M+  + ITP+ +HY CL+DLL+RSG ++EA +L+ +M
Sbjct: 413 FASLLSALSHSGLVEEGKLWFGCMVNHFKITPAEKHYVCLVDLLARSGLVEEASDLLTSM 472

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
             EP    W ALLS C +++  E+G  +A+++L L+P+D     L+SN+YA+   W  V 
Sbjct: 473 KAEPTVAIWVALLSGCLNNKKLELGESIADNILELQPDDVGVLALVSNLYAATKKWDKVR 532

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           +VRKLM     KK PG S IE     H F   + SHP ++EI   + +LD EM++ GY+P
Sbjct: 533 QVRKLMKDSGSKKMPGCSSIEIRGTRHAFLMEDQSHPQREEIVSKVAKLDLEMRKMGYIP 592

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
            T  V HD+E++ KE+QL +HSE+LA+A+GLL + PGT L ++KNLRVCGDCH  +K IS
Sbjct: 593 RTEFVYHDLEEEVKEQQLSYHSEKLAIAFGLLNTGPGTRLVIIKNLRVCGDCHDAIKYIS 652

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I  REIVVRDA R+HHFKDG CSC D+W
Sbjct: 653 KIADREIVVRDAKRFHHFKDGVCSCRDYW 681



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 87/319 (27%), Positives = 157/319 (49%), Gaps = 35/319 (10%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PD   F   + AC  LG  R G+ V      + + DD  V SSL+ +YA+ G   +A  
Sbjct: 105 RPDSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVK 164

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VFD +  ++ V+W+ M++ +  +G+  DA++++ +                         
Sbjct: 165 VFDRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRR------------------------- 199

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
                 MR +GV   D +V+  ++ AC     + +G  +HG ++  G    +  + ++VD
Sbjct: 200 ------MREDGVK-GDEVVMIGVIQACTAARNVRMGASVHGHLLRHGMRMDVVTATSLVD 252

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MYAK   +  A  +FG M  ++ VSW+++I G AQ+GQ++E L L+  M ++G++P+   
Sbjct: 253 MYAKNGLLDVACRVFGLMVHRNDVSWSAMISGFAQNGQSDEALRLFRNMQASGIQPDSGA 312

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
            V  + ACS++G +  GR +   ++  +     L   T  +D+ S+ G L  A+ L   M
Sbjct: 313 LVSALLACSNIGFLKLGRSVHGFIVRRFDFNCILG--TAAIDMYSKCGSLASAQMLFN-M 369

Query: 402 PFEPDEPTWAALLSACKHH 420
             + D   W A+++ C  H
Sbjct: 370 ISDRDLILWNAMIACCGAH 388



 Score = 85.5 bits (210), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 108/216 (50%), Gaps = 3/216 (1%)

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           D    +  + ACA    L  G+ +       GY+  +F+ ++++ +YA+   +  A  +F
Sbjct: 107 DSTTFTLALSACARLGDLRGGESVRDRAFDAGYKDDVFVCSSLLHLYARWGAMGDAVKVF 166

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
            RM R+D V+W++++ G    GQ  + + +Y  M   GVK +EV  +G+I AC+    V 
Sbjct: 167 DRMPRRDRVTWSTMVAGFVSAGQPLDAIQMYRRMREDGVKGDEVVMIGVIQACTAARNVR 226

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G  +   ++  +G+   +   T L+D+ +++G LD A  +   M    D  +W+A++S 
Sbjct: 227 MGASVHGHLLR-HGMRMDVVTATSLVDMYAKNGLLDVACRVFGLMVHRND-VSWSAMISG 284

Query: 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
              +  ++   R+  ++ +   + P S  L+S + A
Sbjct: 285 FAQNGQSDEALRLFRNMQASGIQ-PDSGALVSALLA 319


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/632 (34%), Positives = 339/632 (53%), Gaps = 74/632 (11%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LH   +   + Q   + N L+D Y KC ++  A+ +   M  +D VSW +++  Y+Q 
Sbjct: 249 KQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQI 308

Query: 83  NLPQKTISIFSTM----LALD------------------------------KLQPDHFVF 108
              +  + +F  M    + +D                               ++P+    
Sbjct: 309 GRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTL 368

Query: 109 ASLVKACGSLGATRLGKQVHACFVLSPF-------CDDDVVKSSLVDMYAKCGLPNNARA 161
            S++  C S+GA   GK++H   +  P         D+++V + L+DMYAKC   + ARA
Sbjct: 369 ISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARA 428

Query: 162 VFDSI--KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           +FDS+  K ++ V+WT M+  Y++ G   DA +  E        L + +     Q+R   
Sbjct: 429 MFDSLSPKERDVVTWTVMIGGYSQHG---DANKALE--------LLSEMFEEDCQTRP-- 475

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC-LFISNA 278
                            +   +S  + ACA+ A L +GKQIH   +     +  LF+SN 
Sbjct: 476 -----------------NAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNC 518

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++DMYAKC  I  A+ +F  M  K+ V+WTS++ G   HG  EE L ++DEM   G K +
Sbjct: 519 LIDMYAKCGSISDARLVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLD 578

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
            VT + ++YACSH G++ +G + F  M   +G++P  +HY CL+DLL R+G L+ A  LI
Sbjct: 579 GVTLLVVLYACSHSGMIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLI 638

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
           + MP EP    W A LS C+ H   E+G   A  +  L      SY LLSN+YA+A  W+
Sbjct: 639 EEMPMEPPPVVWVAFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWK 698

Query: 459 HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
            V+++R LM    VKK PG S++E  KG+  F+ G+ +HP   EI+++L +    +K  G
Sbjct: 699 DVTRIRSLMRHKGVKKRPGCSWVEGIKGTTTFFVGDKTHPHAKEIYQVLLDHMQRIKDIG 758

Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
           YVP+T   LHD++ +EK+  LF HSE+LA+AYG+L +  G  +R+ KNLRVCGDCH    
Sbjct: 759 YVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFT 818

Query: 579 MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +SRI   +I++RD++R+HHFK+G CSC  +W
Sbjct: 819 YMSRIIDHDIILRDSSRFHHFKNGSCSCKGYW 850



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/452 (27%), Positives = 220/452 (48%), Gaps = 19/452 (4%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+  Y +C  +  A  + +EM   D VSW SI+ +Y +   P+  + +FS M      
Sbjct: 166 NALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGC 225

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PD+    +++  C SLG   LGKQ+H   V S    +  V + LVDMYAKCG+ + A  
Sbjct: 226 RPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANT 285

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR----NLFLWTALVSGLVQSRN 217
           VF ++ +K+ VSW AM++ Y++ GR +DA+ +FE+        ++  W+A +SG  Q   
Sbjct: 286 VFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGL 345

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL-------GYE 270
             +A     +M   G+   + + L S++  CA+   L  GK+IH   I         G+ 
Sbjct: 346 GYEALGVCRQMLSSGIK-PNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHG 404

Query: 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRM--RRKDVVSWTSIIVGTAQHGQAEETLALYD 328
               + N ++DMYAKC  +  A+ +F  +  + +DVV+WT +I G +QHG A + L L  
Sbjct: 405 DENMVINQLIDMYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLS 464

Query: 329 EMVS--AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
           EM       +PN  T    + AC+ +  +  G+++    + +      L    CL+D+ +
Sbjct: 465 EMFEEDCQTRPNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYA 524

Query: 387 RSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL--LSLKPEDPSSY 444
           + G + +A  +   M    +E TW +L++    H   E    + + +  +  K +  +  
Sbjct: 525 KCGSISDARLVFDNM-MAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLL 583

Query: 445 ILLSNVYASAAMWQHVSKVRKLMSVMEVKKEP 476
           ++L     S  + Q +    ++ +V  V   P
Sbjct: 584 VVLYACSHSGMIDQGMEYFNRMKTVFGVSPGP 615



 Score =  164 bits (416), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 213/480 (44%), Gaps = 78/480 (16%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH--VSWASILTAY 79
           VK +H +++  G+     L + LI  Y     + +A  LL   P  D     W S++ +Y
Sbjct: 44  VKLIHQKLLSFGILTLN-LTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSY 102

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
                  K + +F  M +L    PD++ F  + KACG + + R G+  HA  +++ F  +
Sbjct: 103 GDNGCANKCLYLFGLMHSL-SWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISN 161

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             V ++LV MY++C   ++AR VFD + + + VSW +++ +YA+ G+ K A+E+F +   
Sbjct: 162 VFVGNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSR--- 218

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                       M  E     D + L +++  CA+     LGKQ
Sbjct: 219 ----------------------------MTNEFGCRPDNITLVNVLPPCASLGTHSLGKQ 250

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           +H   +       +F+ N +VDMYAKC  +  A  +F  M  KDVVSW +++ G +Q G+
Sbjct: 251 LHCFAVTSEMIQNMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDVVSWNAMVAGYSQIGR 310

Query: 320 AEETLALYD-----------------------------------EMVSAGVKPNEVTFVG 344
            E+ + L++                                   +M+S+G+KPNEVT + 
Sbjct: 311 FEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLIS 370

Query: 345 LIYACSHVGLVGKGRKL------FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           ++  C+ VG +  G+++      +   +   G          L+D+ ++   +D A  + 
Sbjct: 371 VLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLIDMYAKCKKVDTARAMF 430

Query: 399 KAM-PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED-PSSYILLSNVYASAAM 456
            ++ P E D  TW  ++     H +      + + +     +  P+++ +   + A A++
Sbjct: 431 DSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACASL 490


>gi|449517497|ref|XP_004165782.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g15720-like [Cucumis sativus]
          Length = 603

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 227/591 (38%), Positives = 332/591 (56%), Gaps = 36/591 (6%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           + H+  +KLG        N LI+ Y +   +  AH L +EMP  + VSW S++  Y    
Sbjct: 45  STHSIALKLGFLNNTVNVNHLINCYVRFRSIATAHQLFDEMPNPNVVSWTSLMAGYVDNG 104

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
            P   + +F  ML    + P+ F FA+ +KAC  L   R G+  HA   +  +  + VV 
Sbjct: 105 QPSTALFLFGEMLR-SPVVPNDFTFATAIKACSILSNLRHGEMFHAHVEIFGYGGNIVVC 163

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           SSL+DMY KC     AR VF+S+  KN VS                              
Sbjct: 164 SSLIDMYGKCNDVVKARGVFNSMSCKNIVS------------------------------ 193

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            WT++++   Q+ +  +A   F E      +  +P +L+S++ ACA+   L  GK +HG 
Sbjct: 194 -WTSMIAAYAQNAHGDEALKVFREFTSLSSEHPNPYMLASVISACASLGRLVSGKVMHGA 252

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
            I+LG +S   +++ +VDMYAKC  +  +  +F R+    V+ +TS+IV TA++G   ++
Sbjct: 253 AISLGCDSSEVVASVLVDMYAKCGSLDYSDKVFNRISNPSVIPYTSMIVSTAKYGFGRKS 312

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           L L++EMV  G+KPN +T VG+++ACSH GL  +G     SM E YGI P  +HYTC++D
Sbjct: 313 LQLFEEMVRKGLKPNHITLVGVLHACSHSGLPNEGLYYLTSMYEKYGIMPETKHYTCVVD 372

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPT--WAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +L+R G LD+A +L K+M   PD+    W ALLSA + H   ++       L++   +  
Sbjct: 373 MLARVGELDKAFDLAKSMDVAPDDKALLWGALLSASRCHGRVDIAAEACQQLVNSNRQVA 432

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGE-TSHPLK 500
            +Y+ LSNVYASA   +   K+R  M    V KEPG S+IE    S+IFYAGE TS    
Sbjct: 433 GAYVTLSNVYASAGDMEKAHKLRVEMKRTGVHKEPGCSWIEIKDSSYIFYAGEITSCARG 492

Query: 501 DEIFELLTELDAEMKRRGYVPDTSS-VLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
           DE+  LL ELD +MK RGYV      V  D+E++ +E +++ HSERLA+ +GL+    G 
Sbjct: 493 DEVLCLLRELDQKMKDRGYVRGRKGLVFVDIEEEAEEEKVWLHSERLALGFGLISIPKGL 552

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +R++KNLR+C DCH   K+IS I +RE VVRD  R+HHFK+G C+CN FW
Sbjct: 553 TIRIMKNLRMCSDCHEAFKLISEIMEREFVVRDINRFHHFKNGCCTCNGFW 603


>gi|359492337|ref|XP_002284789.2| PREDICTED: pentatricopeptide repeat-containing protein At5g40410,
           mitochondrial-like [Vitis vinifera]
          Length = 694

 Score =  409 bits (1050), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/587 (36%), Positives = 328/587 (55%), Gaps = 32/587 (5%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
            +HA++IK   +  G + + L+  Y K    + A  L +EMP +D VSW S+++  +   
Sbjct: 140 AIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEMPNKDLVSWNSLMSGLSGRG 199

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
                ++ F  M      QP+     S+V AC  +GA   GK +H   V         V 
Sbjct: 200 YLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVV 259

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           +SL++MY K G  + A  +F+ + +++ VSW +M+  +  +G  +  M++F      NL 
Sbjct: 260 NSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLF------NL- 312

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
                                   M+R G++  D   + +++ AC +  +    + IH  
Sbjct: 313 ------------------------MKRAGIN-PDQATMVALLRACTDTGLGRQAESIHAY 347

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           +   G+ + + I+ A++++YAK   + A++DIF  ++ +D ++WT+++ G A H    E 
Sbjct: 348 IHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREA 407

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           + L+D MV  GV+ + VTF  L+ ACSH GLV +G+K F+ M E Y + P L HY+C++D
Sbjct: 408 IKLFDLMVKEGVEVDHVTFTHLLSACSHSGLVEEGKKYFEIMSEVYRVEPRLDHYSCMVD 467

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           LL RSG L++A  LIK+MP EP    W ALL AC+ + N E+G  VA  LLSL P D  +
Sbjct: 468 LLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVYGNVELGKEVAEQLLSLDPSDHRN 527

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
           YI+LSN+Y++A +W+  SKVR LM    + + PG S+IE G   H F  G+  HP  DEI
Sbjct: 528 YIMLSNIYSAAGLWRDASKVRALMKERRLTRNPGCSFIEHGNKIHRFVVGDQLHPRSDEI 587

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
              L EL  +++  G  P T  VLHD++++ K   +  HSE+LA+A+GLL +  G  L +
Sbjct: 588 HTKLEELIRKIREAGCAPKTEFVLHDIDEEVKVDMINKHSEKLAIAFGLLVTGSGVPLII 647

Query: 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            KNLR+CGDCH   K  S + KR I++RD+ R+HHF DG CSC D+W
Sbjct: 648 TKNLRICGDCHSTAKFASLLEKRTIIIRDSKRFHHFADGLCSCRDYW 694



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 148/314 (47%), Gaps = 33/314 (10%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
           +  SLV A  S  +      +HA  + S    D  +   LV MY K G   +A+ +FD +
Sbjct: 121 IVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEM 180

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
             K+ VSW +++S  +  G                 +L   L               +F 
Sbjct: 181 PNKDLVSWNSLMSGLSGRG-----------------YLGACL--------------NAFC 209

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            MR E     + + L S+V ACA+   L+ GK +HG+V+ LG      + N++++MY K 
Sbjct: 210 RMRTESGRQPNEVTLLSVVSACADMGALDEGKSLHGVVVKLGMSGKAKVVNSLINMYGKL 269

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             + AA  +F  M  + +VSW S++V    +G AE+ + L++ M  AG+ P++ T V L+
Sbjct: 270 GFLDAASQLFEEMPVRSLVSWNSMVVIHNHNGYAEKGMDLFNLMKRAGINPDQATMVALL 329

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            AC+  GL G+  +   + I   G    +   T LL+L ++ G L+ +E++ + +  + D
Sbjct: 330 RACTDTGL-GRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIK-DRD 387

Query: 407 EPTWAALLSACKHH 420
              W A+L+    H
Sbjct: 388 RIAWTAMLAGYAVH 401



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 120/237 (50%), Gaps = 33/237 (13%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K+LH  ++KLG+     + N+LI+ YGK   +  A  L EEMP R  VSW S++  +N  
Sbjct: 241 KSLHGVVVKLGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVRSLVSWNSMVVIHNHN 300

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +K + +F+ M     + PD     +L++AC   G  R  + +HA      F  D ++
Sbjct: 301 GYAEKGMDLFNLM-KRAGINPDQATMVALLRACTDTGLGRQAESIHAYIHRCGFNADIII 359

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+++YAK G  N +  +F+ IK ++ ++WTAML+ YA     ++A+++F+       
Sbjct: 360 ATALLNLYAKLGRLNASEDIFEEIKDRDRIAWTAMLAGYAVHACGREAIKLFDL------ 413

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                    M +EGV+ VD +  + ++ AC++  ++E GK+
Sbjct: 414 -------------------------MVKEGVE-VDHVTFTHLLSACSHSGLVEEGKK 444



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 101/211 (47%), Gaps = 5/211 (2%)

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
           ++ S+V A ++   +     IH  VI     S  FI + +V MY K      A+ +F  M
Sbjct: 121 IVQSLVFAISSCTSVSYCSAIHARVIKSLNYSDGFIGDRLVSMYFKLGYDEDAQRLFDEM 180

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKG 358
             KD+VSW S++ G +  G     L  +  M   +G +PNEVT + ++ AC+ +G + +G
Sbjct: 181 PNKDLVSWNSLMSGLSGRGYLGACLNAFCRMRTESGRQPNEVTLLSVVSACADMGALDEG 240

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
           + L   +++  G++   +    L+++  + G LD A  L + MP      +W +++    
Sbjct: 241 KSLHGVVVK-LGMSGKAKVVNSLINMYGKLGFLDAASQLFEEMPVR-SLVSWNSMVVIHN 298

Query: 419 HHRNTEMGTRVANHL--LSLKPEDPSSYILL 447
           H+   E G  + N +    + P+  +   LL
Sbjct: 299 HNGYAEKGMDLFNLMKRAGINPDQATMVALL 329



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 9/192 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C    +    +++HA I + G +    +   L++ Y K   +  +  + EE+  RD 
Sbjct: 329 LRACTDTGLGRQAESIHAYIHRCGFNADIIIATALLNLYAKLGRLNASEDIFEEIKDRDR 388

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ--- 126
           ++W ++L  Y      ++ I +F  M+  + ++ DH  F  L+ AC   G    GK+   
Sbjct: 389 IAWTAMLAGYAVHACGREAIKLFDLMVK-EGVEVDHVTFTHLLSACSHSGLVEEGKKYFE 447

Query: 127 -VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARS 184
            +   + + P  D     S +VD+  + G   +A  +  S+ ++ S   W A+L A    
Sbjct: 448 IMSEVYRVEPRLDH---YSCMVDLLGRSGRLEDAYELIKSMPMEPSSGVWGALLGACRVY 504

Query: 185 GRKKDAMEIFEQ 196
           G  +   E+ EQ
Sbjct: 505 GNVELGKEVAEQ 516


>gi|357123666|ref|XP_003563529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Brachypodium distachyon]
          Length = 742

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 204/570 (35%), Positives = 325/570 (57%), Gaps = 3/570 (0%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
            T+I    K  L+  A  LL   P R+ +SW  +++ Y++A    + +  F++ML+ D +
Sbjct: 175 TTVISGLAKLGLLDDAWCLLRHSPARNVISWTGLISGYSRAGRAAEAVDCFNSMLS-DGI 233

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PD      L+ AC  L     G+ +H             +  +L+DMYAKCG    A  
Sbjct: 234 EPDEVTVIGLLSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWE 293

Query: 162 VFDSI-KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
           VFD++ + +   SW AM+  Y + G    A  +F+Q   R+L  + +L++G +      +
Sbjct: 294 VFDALGRGRRPQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLRE 353

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
           A   F++MRR  +   D   + S++ ACA+   L  G+ +H  +     E  +++  A++
Sbjct: 354 ALLLFMQMRRHDLR-ADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALL 412

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           DMY KC  +  A  +F  M  +DV +W+++I G A +G  +  L  +  M   G +PN V
Sbjct: 413 DMYLKCGRVEEASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYFFWMKVDGFQPNSV 472

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           T++ ++ ACSH  L+ +GR  F+ M   + I P ++HY C++DLL RSG LDEA +L++ 
Sbjct: 473 TYIAILTACSHSCLLDEGRLYFEEMRLLHNIRPLIEHYGCMIDLLGRSGLLDEAMDLVRT 532

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           MP +P+   WA++LSAC+ H++  +    A HLL L+P++ + Y+ L N+Y  +  W+  
Sbjct: 533 MPMQPNAVIWASILSACRVHKDANLARNAAEHLLKLEPDEDAVYVQLYNIYIDSRQWEDA 592

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
           S++R+LM    VKK  GYS I      H F   + +HP   EI  ++ E+   +K  GY 
Sbjct: 593 SQIRRLMEERGVKKAAGYSSITVAGQVHKFIVCDRTHPQIMEITAMMEEITRRLKSVGYS 652

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           P TS +  D++++EKE  L  HSE++A+A+GL+   P   L ++KNLRVC DCH  +K+I
Sbjct: 653 PITSQITVDVDEEEKEHALLAHSEKIAIAFGLISLAPNLPLHIIKNLRVCEDCHSAIKLI 712

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           SRI  REI+VRD +R+HHF+DG CSCNDFW
Sbjct: 713 SRIWNREIIVRDRSRFHHFRDGTCSCNDFW 742



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 204/432 (47%), Gaps = 44/432 (10%)

Query: 25  LHAQIIKLGLHQYGP----LPNTLIDAYGKCDLV--QYAHHLLEEMPQRDHVSWASILTA 78
           LHA ++  G   + P    L N+L++ +   D +  +YA  L + MP    +   ++   
Sbjct: 18  LHAVLVASGRLLHPPSASHLLNSLVNCFTPTDPLHLRYALCLFDRMPCSTFLFDTALRAC 77

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA-TRLGKQVHA-CFVLSPF 136
           +  ++ P+  + ++  M     +  D F F  L K C    A   L + +HA CF     
Sbjct: 78  FRASSGPESPLILYRRMRR-TGVCTDAFTFHFLFKCCARGRAHVLLCQMLHAACFRTMLP 136

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
               +V + ++ MY + GL  +AR  FD I +K++V+WT ++S  A+ G   DA  +   
Sbjct: 137 SAVPLVSNPIIHMYVELGLAGDARRAFDDIPVKDAVAWTTVISGLAKLGLLDDAWCLLRH 196

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
           +P RN+  WT L+SG  ++    +A   F  M  +G++  D + +  ++ ACA    L  
Sbjct: 197 SPARNVISWTGLISGYSRAGRAAEAVDCFNSMLSDGIE-PDEVTVIGLLSACAQLKDLVF 255

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF---GRMRR------------ 301
           G+ +H LV   G      +  A++DMYAKC DI  A ++F   GR RR            
Sbjct: 256 GRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRRPQSWNAMIDGYC 315

Query: 302 -----------------KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVG 344
                            +D+V++ S+I G    G+  E L L+ +M    ++ +  T V 
Sbjct: 316 KLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRRHDLRADNFTMVS 375

Query: 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE 404
           L+ AC+ +G + +GR L  + IE   +   +   T LLD+  + G ++EA  + +AM   
Sbjct: 376 LLTACASLGALPQGRAL-HACIEQRLVEVDIYLGTALLDMYLKCGRVEEASLVFQAMSVR 434

Query: 405 PDEPTWAALLSA 416
            D  TW+A+++ 
Sbjct: 435 -DVHTWSAMIAG 445



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 103/217 (47%), Gaps = 33/217 (15%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-DL--------------- 53
           L  CA+ +  +  ++LH  + + G+   G L   LID Y KC D+               
Sbjct: 244 LSACAQLKDLVFGRSLHKLVGEKGMLMSGKLVVALIDMYAKCGDIGRAWEVFDALGRGRR 303

Query: 54  ----------------VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLA 97
                           V  A +L ++M  RD V++ S++T Y      ++ + +F  M  
Sbjct: 304 PQSWNAMIDGYCKLGHVDVARYLFDQMEDRDLVTFNSLITGYIHGGRLREALLLFMQMRR 363

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
            D L+ D+F   SL+ AC SLGA   G+ +HAC        D  + ++L+DMY KCG   
Sbjct: 364 HD-LRADNFTMVSLLTACASLGALPQGRALHACIEQRLVEVDIYLGTALLDMYLKCGRVE 422

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
            A  VF ++ +++  +W+AM++  A +G  K A+E F
Sbjct: 423 EASLVFQAMSVRDVHTWSAMIAGLAFNGMGKAALEYF 459


>gi|449434238|ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/603 (34%), Positives = 340/603 (56%), Gaps = 36/603 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNT-LIDAYGKCDL-VQYAHHLLEEMPQR 67
           +++C   Q  L  K +HA  I+ G+    P  N  LI A       + +A  +  ++   
Sbjct: 41  VQLCGSSQSKL--KQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAP 98

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           +  +W +++  + ++  P   + +FS M A   + PD   F  L KA   L    LG+ +
Sbjct: 99  NIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGI 158

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           H+  V + F     V++SLV MY+  G   +A  VF+ +  ++ V+W ++++ +A +G  
Sbjct: 159 HSVVVRNGFDSLRFVQNSLVHMYSVFGFAESAYQVFEIMSYRDRVAWNSVINGFALNGMP 218

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
            +A+ ++                                EM  EGV+  D   + S++ A
Sbjct: 219 NEALTLYR-------------------------------EMGSEGVE-PDGFTMVSLLSA 246

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
           C     L LG+++H  ++ +G       SNA++D+Y+KC +   A+ +F  M  + VVSW
Sbjct: 247 CVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSW 306

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           TS+IVG A +G   E L L+ E+   G+KP+E+TFVG++YACSH G++ +G   F+ M E
Sbjct: 307 TSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKE 366

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
           +YGI P ++H+ C++DLL R+G + +A + I+ MP  P+   W  LL AC  H + E+G 
Sbjct: 367 EYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGE 426

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
                +  L+      ++LLSN+YAS   W  V  VRK+M +  VKK PGYS +E     
Sbjct: 427 VARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRV 486

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
           + F  G+ SHP  +E + +L ++   +K  GYVP T +VL D+E++EKE  L  H+E++A
Sbjct: 487 YEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVA 546

Query: 548 VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
           +A+ L+ + PGT +R++KNLRVC DCH+ +K+IS++ +REI+VRD +R+HHFKDG CSC 
Sbjct: 547 IAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCK 606

Query: 608 DFW 610
           D+W
Sbjct: 607 DYW 609


>gi|449434296|ref|XP_004134932.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449479547|ref|XP_004155632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 638

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/593 (36%), Positives = 339/593 (57%), Gaps = 5/593 (0%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLID--AYGKCDL-VQYAHHLLEEMPQRDHVSWASILTA 78
           +K  HA+I+ LGL   G + + L+   A     L   YA  +   +      +  +++  
Sbjct: 47  IKQAHARILVLGLANDGRITSHLLAFLAISSSSLPSDYALSIYNSISHPTVFATNNMIRC 106

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
           + + +LP+ +IS++S M       P+      +++AC +  A R G QV    +   F  
Sbjct: 107 FVKGDLPRHSISLYSHMCRSFVAAPNKHTLTFVLQACSNAFAIREGAQVQTHVIKLGFVK 166

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSI-KLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
           D  V+++L+ +Y  C    +A+ VFD +   ++ VSW +M+  + R G+   A ++F + 
Sbjct: 167 DVFVRNALIHLYCTCCRVESAKQVFDEVPSSRDVVSWNSMIVGFVRLGQISVAQKLFVEM 226

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P +++  W  ++SG VQ+     A   F E+  + +   +  +L S++ A A    LE G
Sbjct: 227 PEKDVISWGTIISGCVQNGELEKALDYFKELGEQKLR-PNEAILVSLLAAAAQLGTLEYG 285

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           K+IH +  +L +     +  A+VDMYAKC  I  ++ +F RM  KD  SW  +I G A H
Sbjct: 286 KRIHSIANSLRFPMTASLGTALVDMYAKCGCIDESRFLFDRMPEKDKWSWNVMICGLATH 345

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G  +E LAL+++ ++ G  P  VTF+G++ ACS  GLV +G+  FK M + YGI P ++H
Sbjct: 346 GLGQEALALFEKFLTQGFHPVNVTFIGVLTACSRAGLVSEGKHFFKLMTDTYGIEPEMEH 405

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
           Y C++DLLSR+G + +A  +I  MP  PD   WA++L +C+ H   E+G  + N L+ + 
Sbjct: 406 YGCMVDLLSRAGFVYDAVEMINRMPAPPDPVLWASVLGSCQVHGFIELGEEIGNKLIQMD 465

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
           P     Y+ L+ ++A    W+ VSKVR+LM+     K  G+S IE     H F AG+  H
Sbjct: 466 PTHNGHYVQLARIFARLRKWEDVSKVRRLMAERNSNKIAGWSLIEAEGRVHRFVAGDKEH 525

Query: 498 PLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVP 557
               EI+++L  +   +   GY  + SSVLHD+E++EKE  +  HSERLA+A+GLL +  
Sbjct: 526 ERTTEIYKMLEIMGVRIAAAGYSANVSSVLHDIEEEEKENAIKEHSERLAIAFGLLVTKD 585

Query: 558 GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           G  +R++KNLRVCGDCH V K+IS + +REI+VRD +R+HHFK G CSC D+W
Sbjct: 586 GDCIRIIKNLRVCGDCHEVSKIISLVFEREIIVRDGSRFHHFKKGICSCQDYW 638


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  408 bits (1049), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/588 (36%), Positives = 323/588 (54%), Gaps = 33/588 (5%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            + LHA+ +KL  H    +  +L+  Y KC L+  A  + +EMP    V W +++TAY  A
Sbjct: 546  EQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDA 605

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               ++ + +     A + ++PD F    ++ AC  +     G+ V              V
Sbjct: 606  GDLREAVHVARNAFA-NGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFV 664

Query: 143  KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
             ++ VD+Y KCG    AR VFD +                   R KDA+           
Sbjct: 665  ATAAVDLYVKCGEMAKAREVFDKM-------------------RHKDAVA---------- 695

Query: 203  FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
              W A+V G   + +  +A   F+ M+ EG+   D   ++  + AC     L+LG+Q   
Sbjct: 696  --WGAMVGGYASNGHPREALDLFLAMQAEGMK-PDCYAVAGALSACTRLGALDLGRQAIR 752

Query: 263  LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +V    +     +  A++DMYAKC   + A  +F +MR+KD++ W ++I+G    G  + 
Sbjct: 753  MVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI 812

Query: 323  TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
              AL  +M  +GVK N+ TF+GL+ +C+H GL+  GR+ F +M + Y I+P ++HY C++
Sbjct: 813  AFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMV 872

Query: 383  DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
            DLLSR+G L EA  L+  MP   +     ALL  CK HRNTE+   V   L+ L+P +  
Sbjct: 873  DLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSG 932

Query: 443  SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            +Y++LSN+Y++   W+  +K+R  M    V+K P  S++EF    H F  G+ SHPL D+
Sbjct: 933  NYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQ 992

Query: 503  IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
            I++ L EL  EMK  GY P T  V+ D+E +EKE  L  HSE+LA+A+ LL + PG  +R
Sbjct: 993  IYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIR 1052

Query: 563  VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            V KNLRVC DCH  +K++SRIT REI+VRD  R+H F+DG CSCND+W
Sbjct: 1053 VTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1100



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CAR     T +T+     + G+ Q   +    +D Y KC  +  A  + ++M  +D 
Sbjct: 634 LTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDA 693

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W +++  Y     P++ + +F  M A + ++PD +  A  + AC  LGA  LG+Q   
Sbjct: 694 VAWGAMVGGYASNGHPREALDLFLAMQA-EGMKPDCYAVAGALSACTRLGALDLGRQAIR 752

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 F D+ V+ ++L+DMYAKCG    A  VF  ++ K+ + W AM+     +G +K 
Sbjct: 753 MVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI 812

Query: 190 AMEIFEQ 196
           A  +  Q
Sbjct: 813 AFALVGQ 819



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 85/188 (45%), Gaps = 4/188 (2%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L  G+Q+H   + L   +   +  +++ +YAKC  +  A+ +F  M     V WT++I  
Sbjct: 542 LRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITA 601

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
               G   E + +     + G++P+  T V ++ AC+ +  +  G  ++++  E  G+  
Sbjct: 602 YMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAA-EQEGVAQ 660

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS--ACKHHRNTEMGTRVAN 431
           S+   T  +DL  + G + +A  +   M  + D   W A++   A   H    +   +A 
Sbjct: 661 SVFVATAAVDLYVKCGEMAKAREVFDKMRHK-DAVAWGAMVGGYASNGHPREALDLFLAM 719

Query: 432 HLLSLKPE 439
               +KP+
Sbjct: 720 QAEGMKPD 727


>gi|302780040|ref|XP_002971795.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
 gi|300160927|gb|EFJ27544.1| hypothetical protein SELMODRAFT_95653 [Selaginella moellendorffii]
          Length = 782

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/570 (36%), Positives = 326/570 (57%), Gaps = 34/570 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+ ++ +G   L+  A  L E+M  RD V+W  ++T Y Q     + + +F   L  D +
Sbjct: 246 NSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGR-LQQDGI 304

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           + +   F  ++    SL +   GK +H     + +  D VV ++L+ +Y +C  P  A  
Sbjct: 305 KANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWK 364

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F  +  K+ ++WT M  AYA++G +K+A+++F+                          
Sbjct: 365 IFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQ-------------------------- 398

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
                EM+ EG        L +++  CA+ A L+ G+QIH  +I  G+   + +  A+++
Sbjct: 399 -----EMQLEGRRPTSA-TLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALIN 452

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  +  A+ +F +M ++D++ W S++   AQHG  +ETL L+++M   G K + V+
Sbjct: 453 MYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGEKADAVS 512

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI-KA 400
           FV ++ A SH G V  G + F +M++D+ ITP+ + Y C++DLL R+G + EA +++ K 
Sbjct: 513 FVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKL 572

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
               PD   W  LL AC+ H  T+     A  +L   P    +Y++LSNVYA+A  W  V
Sbjct: 573 SGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGV 632

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
           +++RKLM    VKKEPG S IE     H F  G+ SHP +  I+  L  L++EM+  GY+
Sbjct: 633 NRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYI 692

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           PDT  +LHD+E + KE  LF+HSERLA+A+GL+ + PGT LRV+KNLRVC DCH   K I
Sbjct: 693 PDTKMILHDVEDERKEDMLFYHSERLAIAFGLMSTPPGTPLRVIKNLRVCSDCHTATKYI 752

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           S++  REI+VRD  R+H+FKDG+CSC D+W
Sbjct: 753 SKLRGREILVRDTHRFHNFKDGRCSCKDYW 782



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 198/442 (44%), Gaps = 38/442 (8%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  L  CA  +       +H QI++ G      +   LI+ Y KC  V+ A    + + 
Sbjct: 109 YVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLE 168

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            RD VSW +++ A  Q +       ++  M  LD + P+     ++  A G       GK
Sbjct: 169 HRDVVSWTAMIAACVQHDQFALARWLYRRM-QLDGVVPNKITLYTVFNAYGDPHYLSEGK 227

Query: 126 QVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
            +++  V S   + DV V +S ++M+   GL  +AR                        
Sbjct: 228 FIYS-LVSSRVMESDVRVMNSAMNMFGNAGLLGDAR------------------------ 262

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
                   +FE    R++  W  +++  VQ+ N  +A   F  ++++G+   D +    +
Sbjct: 263 -------RLFEDMVDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKAND-ITFVLM 314

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           +    +   L  GK IH LV   GY+  + ++ A++ +Y +C     A  IF  M  KDV
Sbjct: 315 LNVYTSLTSLAKGKVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDV 374

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           ++WT + V  AQ+G  +E L L+ EM   G +P   T V ++  C+H+  + KGR++   
Sbjct: 375 ITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSH 434

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           +IE+ G    +   T L+++  + G + EA ++ + M  + D   W ++L A   H   +
Sbjct: 435 IIEN-GFRMEMVVETALINMYGKCGKMAEARSVFEKMA-KRDILVWNSMLGAYAQHGYYD 492

Query: 425 MGTRVANHL-LSLKPEDPSSYI 445
              ++ N + L  +  D  S++
Sbjct: 493 ETLQLFNQMQLDGEKADAVSFV 514



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/381 (25%), Positives = 174/381 (45%), Gaps = 45/381 (11%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG-LPNNA 159
            +PD   F +L++ C S      G++VH       F  +++V   L+ MYA+CG +P   
Sbjct: 1   FKPDTAFFVALLQRCSSAKNVDHGRRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVP--- 57

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
                                        +A ++FE    +++F WT ++    Q  +  
Sbjct: 58  -----------------------------EAQQVFEILERKDVFAWTRMIGIYCQQGDYD 88

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
            A   F +M+ E V +   +   +I+ ACA+   L+ G +IHG ++  G+E  +F+  A+
Sbjct: 89  RALGMFYQMQEEDV-MPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTAL 147

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           ++MY KC  +  A D F R+  +DVVSWT++I    QH Q      LY  M   GV PN+
Sbjct: 148 INMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNK 207

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           +T   +  A      + +G+ ++ S++    +   ++     +++   +G L +A  L +
Sbjct: 208 ITLYTVFNAYGDPHYLSEGKFIY-SLVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFE 266

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPEDPSSYILLSNVYASAAMW 457
            M  + D  TW  +++    + N     R+   L    +K  D  +++L+ NVY S    
Sbjct: 267 DM-VDRDVVTWNIVITFYVQNENFGEAVRLFGRLQQDGIKANDI-TFVLMLNVYTS---- 320

Query: 458 QHVSKVRKLMSVMEVKKEPGY 478
             ++ + K   + E+ KE GY
Sbjct: 321 --LTSLAKGKVIHELVKEAGY 339



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/446 (22%), Positives = 186/446 (41%), Gaps = 68/446 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  +   G  Q   +   LI  Y +C  V  A  + E + ++D  +W  ++  Y Q 
Sbjct: 25  RRVHWHVCDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQ 84

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + +F  M   D + P    + +++ AC S  + + G ++H   +   F  D  V
Sbjct: 85  GDYDRALGMFYQMQEED-VMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFV 143

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L++MY KCG    A   F  ++ ++ VSWTAM++A                      
Sbjct: 144 GTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA---------------------- 181

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                     VQ      A + +  M+ +GV + + + L ++  A  +   L  GK I+ 
Sbjct: 182 ---------CVQHDQFALARWLYRRMQLDGV-VPNKITLYTVFNAYGDPHYLSEGKFIYS 231

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           LV +   ES + + N+ ++M+     +  A+ +F  M  +DVV+W  +I    Q+    E
Sbjct: 232 LVSSRVMESDVRVMNSAMNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITFYVQNENFGE 291

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L+  +   G+K N++TFV ++   + +  + KG K+   ++++ G    +   T L+
Sbjct: 292 AVRLFGRLQQDGIKANDITFVLMLNVYTSLTSLAKG-KVIHELVKEAGYDRDVVVATALM 350

Query: 383 DLLSR-------------------------------SGHLDEAENLIKAMPFEPDEPTWA 411
            L  R                               +G   EA  L + M  E   PT A
Sbjct: 351 SLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSA 410

Query: 412 ---ALLSACKHHRNTEMGTRVANHLL 434
              A+L  C H    + G ++ +H++
Sbjct: 411 TLVAVLDTCAHLAALQKGRQIHSHII 436



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 108/210 (51%), Gaps = 5/210 (2%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  + + G  +   +   L+  YG+C+    A  +  +M  +D ++W  +  AY Q 
Sbjct: 328 KVIHELVKEAGYDRDVVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQN 387

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ + +F  M  L+  +P      +++  C  L A + G+Q+H+  + + F  + VV
Sbjct: 388 GFRKEALQLFQEM-QLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENGFRMEMVV 446

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR-- 200
           +++L++MY KCG    AR+VF+ +  ++ + W +ML AYA+ G   + +++F Q  +   
Sbjct: 447 ETALINMYGKCGKMAEARSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGE 506

Query: 201 --NLFLWTALVSGLVQSRNEIDAFYSFIEM 228
             +   + +++S L  S +  D +  F+ M
Sbjct: 507 KADAVSFVSVLSALSHSGSVTDGYQYFVAM 536



 Score = 62.8 bits (151), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 88/200 (44%), Gaps = 16/200 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        + +H+ II+ G      +   LI+ YGKC  +  A  + E+M +RD 
Sbjct: 416 LDTCAHLAALQKGRQIHSHIIENGFRMEMVVETALINMYGKCGKMAEARSVFEKMAKRDI 475

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           + W S+L AY Q     +T+ +F+ M  LD  + D   F S++ A    G+   G Q   
Sbjct: 476 LVWNSMLGAYAQHGYYDETLQLFNQM-QLDGEKADAVSFVSVLSALSHSGSVTDGYQYFV 534

Query: 130 C----FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK--LKNSVSWTAMLSAYAR 183
                F ++P  +   +   +VD+  + G    A  +   +   L + + W  +L A  R
Sbjct: 535 AMLQDFSITPTPE---LYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGA-CR 590

Query: 184 SGRKKD-----AMEIFEQAP 198
           +  K D     A ++ E+ P
Sbjct: 591 THNKTDQAKAAAEQVLERDP 610


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/588 (36%), Positives = 323/588 (54%), Gaps = 33/588 (5%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            + LHA+ +KL  H    +  +L+  Y KC L+  A  + +EMP    V W +++TAY  A
Sbjct: 570  EQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDA 629

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               ++ + +     A + ++PD F    ++ AC  +     G+ V              V
Sbjct: 630  GDLREAVHVARNAFA-NGMRPDSFTAVRVLTACARIADLATGETVWRAAEQEGVAQSVFV 688

Query: 143  KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
             ++ VD+Y KCG    AR VFD +                   R KDA+           
Sbjct: 689  ATAAVDLYVKCGEMAKAREVFDKM-------------------RHKDAVA---------- 719

Query: 203  FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
              W A+V G   + +  +A   F+ M+ EG+   D   ++  + AC     L+LG+Q   
Sbjct: 720  --WGAMVGGYASNGHPREALDLFLAMQAEGMK-PDCYAVAGALSACTRLGALDLGRQAIR 776

Query: 263  LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +V    +     +  A++DMYAKC   + A  +F +MR+KD++ W ++I+G    G  + 
Sbjct: 777  MVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI 836

Query: 323  TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
              AL  +M  +GVK N+ TF+GL+ +C+H GL+  GR+ F +M + Y I+P ++HY C++
Sbjct: 837  AFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCMV 896

Query: 383  DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
            DLLSR+G L EA  L+  MP   +     ALL  CK HRNTE+   V   L+ L+P +  
Sbjct: 897  DLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAEHVLKQLILLEPWNSG 956

Query: 443  SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            +Y++LSN+Y++   W+  +K+R  M    V+K P  S++EF    H F  G+ SHPL D+
Sbjct: 957  NYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQ 1016

Query: 503  IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
            I++ L EL  EMK  GY P T  V+ D+E +EKE  L  HSE+LA+A+ LL + PG  +R
Sbjct: 1017 IYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLITGPGETIR 1076

Query: 563  VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            V KNLRVC DCH  +K++SRIT REI+VRD  R+H F+DG CSCND+W
Sbjct: 1077 VTKNLRVCSDCHTAIKLVSRITHREIIVRDNNRFHCFRDGSCSCNDYW 1124



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CAR     T +T+     + G+ Q   +    +D Y KC  +  A  + ++M  +D 
Sbjct: 658 LTACARIADLATGETVWRAAEQEGVAQSVFVATAAVDLYVKCGEMAKAREVFDKMRHKDA 717

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W +++  Y     P++ + +F  M A + ++PD +  A  + AC  LGA  LG+Q   
Sbjct: 718 VAWGAMVGGYASNGHPREALDLFLAMQA-EGMKPDCYAVAGALSACTRLGALDLGRQAIR 776

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 F D+ V+ ++L+DMYAKCG    A  VF  ++ K+ + W AM+     +G +K 
Sbjct: 777 MVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKI 836

Query: 190 AMEIFEQ 196
           A  +  Q
Sbjct: 837 AFALVGQ 843



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 85/188 (45%), Gaps = 4/188 (2%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L  G+Q+H   + L   +   +  +++ +YAKC  +  A+ +F  M     V WT++I  
Sbjct: 566 LRAGEQLHARSLKLPSHTNPHVLTSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITA 625

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
               G   E + +     + G++P+  T V ++ AC+ +  +  G  ++++  E  G+  
Sbjct: 626 YMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARIADLATGETVWRAA-EQEGVAQ 684

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS--ACKHHRNTEMGTRVAN 431
           S+   T  +DL  + G + +A  +   M  + D   W A++   A   H    +   +A 
Sbjct: 685 SVFVATAAVDLYVKCGEMAKAREVFDKMRHK-DAVAWGAMVGGYASNGHPREALDLFLAM 743

Query: 432 HLLSLKPE 439
               +KP+
Sbjct: 744 QAEGMKPD 751


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 223/635 (35%), Positives = 351/635 (55%), Gaps = 60/635 (9%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP---LPNTLIDAYGKCDLVQYA 57
           M+  +Y   L  C   +     + +HA +IK    +Y P   L   LI  Y KCD +  A
Sbjct: 241 MKFENYNAILNECVNKRAFREGQRVHAHMIKT---RYLPSVFLRTRLIVLYTKCDSLGDA 297

Query: 58  HHLLEEMPQRDHVSWASILTAYNQANLPQKTISIF--------STMLALDKL-------- 101
           H++ +EMP+R+ VSW ++++AY+Q     + +++F        + + A+DKL        
Sbjct: 298 HNVFDEMPERNVVSWTAMISAYSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRP 357

Query: 102 ----QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
               +P+ F FA+++ +C S     LG+Q+H+  +   + D   V SSL+DMYAK     
Sbjct: 358 WVCTEPNEFTFATVLTSCTSSLGFILGRQIHSLIIKLNYEDHVFVGSSLLDMYAK----- 412

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
                                      G+  +A  +FE  P R++   TA++SG  Q   
Sbjct: 413 --------------------------DGKIHEARTVFECLPERDVVSCTAIISGYAQLGL 446

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
           + +A   F  ++ EG+   + +  + ++ A +  A L+LGKQ+H  V+     S + + N
Sbjct: 447 DEEALELFRRLQGEGMK-SNYVTYTGVLTALSGLAALDLGKQVHNHVLRSEIPSFVVLQN 505

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEM-VSAGVK 336
           +++DMY+KC ++  ++ IF  M  + V+SW +++VG ++HG+  E L L+  M     VK
Sbjct: 506 SLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVLKLFTLMREETKVK 565

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-DYGITPSLQHYTCLLDLLSRSGHLDEAE 395
           P+ VT + ++  CSH GL  KG  +F  M      + P ++HY C++DLL RSG ++EA 
Sbjct: 566 PDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVVDLLGRSGRVEEAF 625

Query: 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
             IK MPFEP    W +LL AC+ H N ++G      LL ++P +  +Y++LSN+YASA 
Sbjct: 626 EFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGNAGNYVILSNLYASAG 685

Query: 456 MWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK 515
            W+ VS +R LM    V KEPG S IE  +  H F+A + SHP ++EI   + EL    K
Sbjct: 686 RWEDVSSLRDLMLKKTVTKEPGRSSIELDQVLHTFHASDRSHPRREEICMKVKELSTSFK 745

Query: 516 RRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHI 575
             GYVPD S VLHD+++++KE+ L  HSE+LA+++GL+ S     +RV+KNLR+C DCH 
Sbjct: 746 EVGYVPDLSCVLHDVDEEQKEKILLGHSEKLALSFGLIASPASVPIRVIKNLRICVDCHN 805

Query: 576 VMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             K IS++  RE+ +RD  R+H    GKCSC D+W
Sbjct: 806 FAKYISKVYGREVSLRDKNRFHRIVGGKCSCEDYW 840


>gi|356536721|ref|XP_003536884.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Glycine max]
          Length = 1116

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 208/552 (37%), Positives = 328/552 (59%), Gaps = 11/552 (1%)

Query: 65  PQRDHVSWASILTAYNQANLPQKT----ISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
           P  +   W +++ A  ++ +        +S++  M  L  + PD   F  L++   S+  
Sbjct: 20  PNIESFVWNNLIRASTRSRVQNPAFPPALSLYLRM-RLHAVLPDLHTFPFLLQ---SINT 75

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
              G+Q+HA  +L    +D  V++SL++MY+ CG P  AR  FD I   +  SW A++ A
Sbjct: 76  PHRGRQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHA 135

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR-EGVDI-VDP 238
            A++G    A ++F+Q P +N+  W+ ++ G V       A   F  ++  EG  +  + 
Sbjct: 136 NAKAGMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNE 195

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
             +SS++ ACA    L+ GK +H  +   G +  + +  +++DMYAKC  I  AK IF  
Sbjct: 196 FTMSSVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDN 255

Query: 299 M-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357
           +   KDV++W+++I   + HG +EE L L+  MV+ GV+PN VTFV ++ AC H GLV +
Sbjct: 256 LGPEKDVMAWSAMITAFSMHGLSEECLELFARMVNDGVRPNAVTFVAVLCACVHGGLVSE 315

Query: 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417
           G + FK M+ +YG++P +QHY C++DL SR+G +++A N++K+MP EPD   W ALL+  
Sbjct: 316 GNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNGA 375

Query: 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPG 477
           + H + E        LL L P + S+Y+LLSNVYA    W+ V  +R LM V  +KK PG
Sbjct: 376 RIHGDVETCEIAITKLLELDPANSSAYVLLSNVYAKLGRWREVRHLRDLMEVRGIKKLPG 435

Query: 478 YSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKER 537
            S +E       F+AG+ SHP    ++ +L E+   +++ GY  +T  VL D++++ KE 
Sbjct: 436 CSLVEVDGVIREFFAGDNSHPELLNLYVMLDEIMKRLEKHGYERNTGEVLLDLDEEGKEF 495

Query: 538 QLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYH 597
            L  HSE+LA+AY  L++ PGT +R+VKNLR+C DCH+ +K+IS+   REI+VRD  R+H
Sbjct: 496 ALSLHSEKLAIAYCFLRTSPGTTIRIVKNLRICSDCHVAIKIISKEFNREIIVRDCNRFH 555

Query: 598 HFKDGKCSCNDF 609
           HFK+G CSC D+
Sbjct: 556 HFKNGLCSCKDY 567



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 151/335 (45%), Gaps = 68/335 (20%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKC------------------------------- 51
           + LHAQI+ LGL     +  +LI+ Y  C                               
Sbjct: 80  RQLHAQILLLGLANDPFVQTSLINMYSSCGTPTFARQAFDEITQPDLPSWNAIIHANAKA 139

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD--KLQPDHFVFA 109
            ++  A  L ++MP+++ +SW+ ++  Y      +  +S+F ++  L+  +L+P+ F  +
Sbjct: 140 GMIHIARKLFDQMPEKNVISWSCMIHGYVSCGEYKAALSLFRSLQTLEGSQLRPNEFTMS 199

Query: 110 SLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI-KL 168
           S++ AC  LGA + GK VHA    +    D V+ +SL+DMYAKCG    A+ +FD++   
Sbjct: 200 SVLSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPE 259

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228
           K+ ++W+AM++A++  G  ++ +E+F +                               M
Sbjct: 260 KDVMAWSAMITAFSMHGLSEECLELFAR-------------------------------M 288

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQ-IHGLVIALGYESCLFISNAIVDMYAKCS 287
             +GV   + +   +++ AC +  ++  G +    ++   G    +     +VD+Y++  
Sbjct: 289 VNDGVR-PNAVTFVAVLCACVHGGLVSEGNEYFKRMMNEYGVSPMIQHYGCMVDLYSRAG 347

Query: 288 DIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAE 321
            I  A ++   M    DV+ W +++ G   HG  E
Sbjct: 348 RIEDAWNVVKSMPMEPDVMIWGALLNGARIHGDVE 382



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 91/177 (51%), Gaps = 10/177 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM-PQRD 68
           L  CAR       K +HA I K G+     L  +LID Y KC  ++ A  + + + P++D
Sbjct: 202 LSACARLGALQHGKWVHAYIDKTGMKIDVVLGTSLIDMYAKCGSIERAKCIFDNLGPEKD 261

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG---- 124
            ++W++++TA++   L ++ + +F+ M+  D ++P+   F +++ AC   G    G    
Sbjct: 262 VMAWSAMITAFSMHGLSEECLELFARMVN-DGVRPNAVTFVAVLCACVHGGLVSEGNEYF 320

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSA 180
           K++   + +SP          +VD+Y++ G   +A  V  S+ ++  V  W A+L+ 
Sbjct: 321 KRMMNEYGVSPMIQH---YGCMVDLYSRAGRIEDAWNVVKSMPMEPDVMIWGALLNG 374


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 224/607 (36%), Positives = 337/607 (55%), Gaps = 42/607 (6%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L  CA        + LH + +KLGL     + N L+  YG+C  V+        M   DH
Sbjct: 497  LSSCASLGWISVGEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDH 556

Query: 70   VSWASILTAY--NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
            VSW S++ A   ++ ++ +   S    M A     P+   F +++ A  SL    LGKQ+
Sbjct: 557  VSWNSLIGALADSEPSMLEAVESFLVMMRA--GWDPNRVTFITILAAVSSLSLHELGKQI 614

Query: 128  HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK-LKNSVSWTAMLSAYARSGR 186
            HA  +      D  ++++L+  Y KCG       +F  +   ++ VSW +M+S Y  +  
Sbjct: 615  HALVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNEL 674

Query: 187  KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
               AM++          +W      ++Q    +D F                   ++++ 
Sbjct: 675  LPKAMDM----------VWF-----MMQKGQRLDGF-----------------TFATVLS 702

Query: 247  ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
            ACA  A LE G ++HG  +    ES + I +A+VDMYAKC  I  A   F  M  +++ S
Sbjct: 703  ACATVATLERGMEVHGCSVRACLESDIVIGSALVDMYAKCGRIDYASRFFEMMPARNLYS 762

Query: 307  WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
            W S+I G A+HG   ++L L+ +M   G  P+ VTFVG++ ACSH GLV +G   F SM 
Sbjct: 763  WNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVTFVGVLSACSHAGLVNEGFSHFDSMS 822

Query: 367  EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC--KHHRNTE 424
            E YG+ P ++H++C++DLL R G L++ E+ +  MP +P+   W  +L AC   + RNT 
Sbjct: 823  EIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQMPVKPNVLIWRTVLGACCRANGRNTA 882

Query: 425  MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
            +G R A  LL ++P +  +YILLSN+YAS   W  V+K R  M    VKKE G S++   
Sbjct: 883  LGRRAAEMLLEMEPTNAVNYILLSNMYASGGKWDDVAKTRVAMRKAFVKKEAGCSWVTMK 942

Query: 485  KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
             G H+F AG+ SHP KD I+E L EL+ +M+  GY+P+T   L+D+E + KE  L +HSE
Sbjct: 943  DGVHVFVAGDKSHPEKDLIYEKLKELNGKMRLAGYIPETRFALYDLEGESKEELLSYHSE 1002

Query: 545  RLAVAYGLLKSVPGTV-LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
            ++AVA+ L +  P  + +R++KNLRVCGDCH   K IS+I +R+IV+RD+ R+HHF++GK
Sbjct: 1003 KIAVAFVLTR--PSKMPIRILKNLRVCGDCHSAFKYISQIVERQIVLRDSNRFHHFENGK 1060

Query: 604  CSCNDFW 610
            CSC DFW
Sbjct: 1061 CSCGDFW 1067



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 208/478 (43%), Gaps = 89/478 (18%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH Q+ K G      L NTLI+ Y +   +     + +EMP R+ VSW+ +++ Y + 
Sbjct: 93  EELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRN 152

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG--ATRLGKQVHACFVLSPFCDDD 140
            +P +   +F  M++ D   P+H+ F S+++AC   G    + G Q+H     + + +D 
Sbjct: 153 RMPNEACELFRKMVS-DGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDV 211

Query: 141 VVKSSLVDMYAKC-GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF----- 194
              + L+ MY    G+ + AR  FDSI  +N VS  +M+S Y + G    A +IF     
Sbjct: 212 TASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQK 271

Query: 195 --------------------------------EQAPVR--------NLFLWTALVSGLVQ 214
                                           EQ   R        +L++ +ALVSG  +
Sbjct: 272 EVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAK 331

Query: 215 S---------------RNEI----------------DAFYSFIEMRREGVDIVDPLVLSS 243
           +               RN +                +A   F+EM ++ V++ +P     
Sbjct: 332 AGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM-KDSVEL-NPNSYMI 389

Query: 244 IVGACANFAVLELGK----QIHGLVIALG-YESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
           I+ A   F VLE GK    ++H  +I  G   + + I N +++MYAKC  I  A  +F  
Sbjct: 390 ILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRL 449

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
           M  KD V+W S+I G  Q+ Q  E +  + EM    + P+  T +  + +C+ +G +  G
Sbjct: 450 MDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVG 509

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            +L    ++  G+   +     LL L    G++ E +     M  + D  +W +L+ A
Sbjct: 510 EQLHCEGLK-LGLDLDVSVSNALLALYGECGYVKECQKAFSLM-LDYDHVSWNSLIGA 565



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 196/420 (46%), Gaps = 41/420 (9%)

Query: 25  LHAQIIKLGL-HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           +HA +I+ GL +    + N LI+ Y KC  +  A  +   M  +D V+W S++T  +Q  
Sbjct: 410 VHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNK 469

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-V 142
              + +  F  M   + L P +F   S + +C SLG   +G+Q+H C  L    D DV V
Sbjct: 470 QFLEAVKTFQEMRRTE-LYPSNFTMISALSSCASLGWISVGEQLH-CEGLKLGLDLDVSV 527

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+ +Y +CG     +  F  +   + VSW +++ A A S                  
Sbjct: 528 SNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADS------------------ 569

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                         + ++A  SF+ M R G D  + +   +I+ A ++ ++ ELGKQIH 
Sbjct: 570 ------------EPSMLEAVESFLVMMRAGWD-PNRVTFITILAAVSSLSLHELGKQIHA 616

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAE 321
           LV+     +   I NA++  Y KC D+   ++IF RM  R+D VSW S+I G   +    
Sbjct: 617 LVLKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLP 676

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           + + +   M+  G + +  TF  ++ AC+ V  + +G ++    +    +   +   + L
Sbjct: 677 KAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERGMEVHGCSVRAC-LESDIVIGSAL 735

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +D+ ++ G +D A    + MP   +  +W +++S    H +   GT+  +    +K + P
Sbjct: 736 VDMYAKCGRIDYASRFFEMMPAR-NLYSWNSMISGYARHGH---GTKSLDLFAQMKLQGP 791



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 155/352 (44%), Gaps = 57/352 (16%)

Query: 114 ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS 173
           +CGS  A    +++H     + F +D  + ++L+++YA+ G   + R VFD + L+N VS
Sbjct: 86  SCGSKDA----EELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVS 141

Query: 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233
           W+ ++S Y R+    +A E+F +           +VS         D F           
Sbjct: 142 WSCLISGYTRNRMPNEACELFRK-----------MVS---------DGF----------- 170

Query: 234 DIVDPLVLSSIVGACANFAV--LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
            + +     S++ AC       L+ G QIHGL+    Y + +  SN ++ MY     ++ 
Sbjct: 171 -MPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVD 229

Query: 292 -AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD----EMVSAGVKPNEVTFVGLI 346
            A+  F  +  +++VS  S+I    Q G A     ++     E++  G+KPNE TF  LI
Sbjct: 230 YARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLI 289

Query: 347 YA-CSHVGLVGKGRKLFKSM---IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
            A CS   L   G  L + +   +E  G    L   + L+   +++G +  A+N+ + M 
Sbjct: 290 SATCS---LANSGLVLLEQLLTRVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMS 346

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE---DPSSYILLSNVY 451
           +         ++   +  R    G       + +K     +P+SY+++   +
Sbjct: 347 YRNVVSLNGLIIGLVRQKR----GEEAVELFMEMKDSVELNPNSYMIILTAF 394


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/588 (36%), Positives = 321/588 (54%), Gaps = 33/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHA+ +KL  H    +  +L+  Y +C L+  A  + +EMP    VSW +++TAY  A
Sbjct: 138 EQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDA 197

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ + +     A + ++PD F    ++ AC  +     G+ V              V
Sbjct: 198 GDLREAVHVARNAFA-NGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFV 256

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++ VD+Y KCG    AR VFD +                   R KDA+           
Sbjct: 257 ATAAVDLYVKCGEMAKAREVFDKM-------------------RDKDAVA---------- 287

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W A+V G   + +  +A   F+ M+ EGV   D   ++  + AC     L+LG+Q   
Sbjct: 288 --WGAMVGGYASNGHPREALDLFLAMQAEGVR-PDCYAVAGALSACTRLGALDLGRQAIR 344

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           +V    +     +  A++DMYAKC     A  +F +MR+KD++ W ++I+G    G  + 
Sbjct: 345 MVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKT 404

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
              L  +M  +GVK N+ TF+GL+ +C+H GL+  GR+ F +M + Y I+P ++HY C++
Sbjct: 405 AFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIV 464

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLLSR+G L EA  LI  MP   +     ALL  CK HRN E+   V   L+ L+P +  
Sbjct: 465 DLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSG 524

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y++LSN+Y++   W+  +K+R  M    V+K P  S++EF    H F  G+ SHPL D+
Sbjct: 525 NYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQ 584

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I++ L EL  EMK  GY P T  V+ D+E +EKE  L  HSE+LA+A+ LL + PG  +R
Sbjct: 585 IYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIR 644

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V KNLRVC DCH  +K+ISRIT REI+VRD  R+H F+DG CSCND+W
Sbjct: 645 VTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 692



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CAR     T +T+     + G+ Q   +    +D Y KC  +  A  + ++M  +D 
Sbjct: 226 LTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDA 285

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W +++  Y     P++ + +F  M A + ++PD +  A  + AC  LGA  LG+Q   
Sbjct: 286 VAWGAMVGGYASNGHPREALDLFLAMQA-EGVRPDCYAVAGALSACTRLGALDLGRQAIR 344

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 F D+ V+ ++L+DMYAKCG    A  VF  ++ K+ + W AM+     +G +K 
Sbjct: 345 MVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKT 404

Query: 190 AMEIFEQ 196
           A  +  Q
Sbjct: 405 AFTLIGQ 411



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 2/163 (1%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L  G+Q+H   + L   +   +  +++ +YA+C  +  A+ +F  M     VSWT++I  
Sbjct: 134 LRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITA 193

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
               G   E + +     + G++P+  T V ++ AC+ V  +  G  ++++  E  GI  
Sbjct: 194 YMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAA-EQEGIAQ 252

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           S+   T  +DL  + G + +A  +   M  + D   W A++  
Sbjct: 253 SVFVATAAVDLYVKCGEMAKAREVFDKMR-DKDAVAWGAMVGG 294


>gi|356526928|ref|XP_003532067.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/599 (36%), Positives = 334/599 (55%), Gaps = 44/599 (7%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTA 78
           V+ LH  ++  G   Y  + N ++  Y +   +  A  +  EM +   RD VSW +++ A
Sbjct: 158 VRQLHCFVVVCGHDCYASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVA 217

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
             Q     + + +F  M+    L+ D F  AS++ A   +     G+Q H   + S F  
Sbjct: 218 CGQHREGMEAVGLFREMVR-RGLKVDMFTMASVLTAFTCVKDLVGGRQFHGMMIKSGFHG 276

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           +  V S L+D+Y+KC                              +G   +  ++FE+  
Sbjct: 277 NSHVGSGLIDLYSKC------------------------------AGSMVECRKVFEEIT 306

Query: 199 VRNLFLWTALVSG--LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
             +L LW  ++SG  L +  +E D  + F EM+R G    D      +  AC+N +   L
Sbjct: 307 APDLVLWNTMISGFSLYEDLSE-DGLWCFREMQRNGFR-PDDCSFVCVTSACSNLSSPSL 364

Query: 257 GKQIHGLVIA--LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
           GKQ+H L I   + Y   + ++NA+V MY+KC ++  A+ +F  M   + VS  S+I G 
Sbjct: 365 GKQVHALAIKSDVPYNR-VSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGY 423

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
           AQHG   E+L L++ M+   + PN +TF+ ++ AC H G V +G+K F  M E + I P 
Sbjct: 424 AQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPE 483

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
            +HY+C++DLL R+G L EAE +I+ MPF P    WA LL AC+ H N E+  + AN  L
Sbjct: 484 AEHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFL 543

Query: 435 SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGE 494
            L+P + + Y++LSN+YASAA W+  + V++LM    VKK+PG S+IE  K  H+F A +
Sbjct: 544 RLEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAED 603

Query: 495 TSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL---HDMEQKEKERQLFWHSERLAVAYG 551
           TSHP+  EI   + ++  +MK+ GYVPD    L    ++E  E+ER+L +HSE+LAVA+G
Sbjct: 604 TSHPMIKEIHVYMGKMLKKMKQAGYVPDIRWALVKDEEVEPDERERRLLYHSEKLAVAFG 663

Query: 552 LLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           L+ +  G  + VVKNLR+CGDCH  +K+IS +T REI VRD  R+H FK+G CSC D+W
Sbjct: 664 LISTEEGVPILVVKNLRICGDCHNAVKLISALTGREITVRDTHRFHCFKEGHCSCRDYW 722



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 116/463 (25%), Positives = 206/463 (44%), Gaps = 85/463 (18%)

Query: 24  TLHAQIIKLGLHQYGPL--PNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           +LH       L QY  +   NTLI+AY K  L+  A  + +E+PQ D VS+ +++ AY  
Sbjct: 59  SLHNAQTSFHLTQYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYAD 118

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
                 T+ +F  +  L +L  D F  + ++ ACG      L +Q+H CFV+   C  D 
Sbjct: 119 RGECGPTLRLFEEVREL-RLGLDGFTLSGVITACGD--DVGLVRQLH-CFVV--VCGHDC 172

Query: 142 ---VKSSLVDMYAKCGLPNNARAVFDSIKL---KNSVSWTAMLSAYARSGRKKDAMEIFE 195
              V ++++  Y++ G  + AR VF  +     ++ VSW AM+ A    G+ ++ ME   
Sbjct: 173 YASVNNAVLACYSRKGFLSEARRVFREMGEGGGRDEVSWNAMIVA---CGQHREGME--- 226

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
                                    A   F EM R G+  VD   ++S++ A      L 
Sbjct: 227 -------------------------AVGLFREMVRRGLK-VDMFTMASVLTAFTCVKDLV 260

Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCS-DIIAAKDIFGRMRRKDVVSWTSIIVGT 314
            G+Q HG++I  G+     + + ++D+Y+KC+  ++  + +F  +   D+V W ++I G 
Sbjct: 261 GGRQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEITAPDLVLWNTMISGF 320

Query: 315 AQHGQ-AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
           + +   +E+ L  + EM   G +P++ +FV +  ACS++     G+++    I+      
Sbjct: 321 SLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGKQVHALAIKSDVPYN 380

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMP--------------------------FE--- 404
            +     L+ + S+ G++ +A  +   MP                          FE   
Sbjct: 381 RVSVNNALVAMYSKCGNVHDARRVFDTMPEHNTVSLNSMIAGYAQHGVEVESLRLFELML 440

Query: 405 -----PDEPTWAALLSACKHHRNTEMGTRVANHL---LSLKPE 439
                P+  T+ A+LSAC H    E G +  N +     ++PE
Sbjct: 441 EKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKERFCIEPE 483



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/484 (22%), Positives = 209/484 (43%), Gaps = 56/484 (11%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
            F +L+KAC +      GK +HA +  S       + +    +Y+KCG  +NA+  F   
Sbjct: 11  TFRNLLKACIAQRDLITGKILHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFHLT 70

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
           +  N  S+  +++AYA+      A  +F++ P  ++  +  L++     R E        
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHIARRVFDEIPQPDIVSYNTLIAAYAD-RGECGPTLRLF 129

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           E  RE    +D   LS ++ AC +   + L +Q+H  V+  G++    ++NA++  Y++ 
Sbjct: 130 EEVRELRLGLDGFTLSGVITACGD--DVGLVRQLHCFVVVCGHDCYASVNNAVLACYSRK 187

Query: 287 SDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
             +  A+ +F  M     +D VSW ++IV   QH +  E + L+ EMV  G+K +  T  
Sbjct: 188 GFLSEARRVFREMGEGGGRDEVSWNAMIVACGQHREGMEAVGLFREMVRRGLKVDMFTMA 247

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR-SGHLDEAENLIKAMP 402
            ++ A + V  +  GR+    MI+  G   +    + L+DL S+ +G + E   + + + 
Sbjct: 248 SVLTAFTCVKDLVGGRQFHGMMIKS-GFHGNSHVGSGLIDLYSKCAGSMVECRKVFEEIT 306

Query: 403 -----------------------------------FEPDEPTWAALLSACKHHRNTEMGT 427
                                              F PD+ ++  + SAC +  +  +G 
Sbjct: 307 APDLVLWNTMISGFSLYEDLSEDGLWCFREMQRNGFRPDDCSFVCVTSACSNLSSPSLGK 366

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
           +V  H L++K + P + + ++N  A  AM+     V     V +    P ++ +      
Sbjct: 367 QV--HALAIKSDVPYNRVSVNN--ALVAMYSKCGNVHDARRVFDTM--PEHNTVSLNS-- 418

Query: 488 HIFYAGETSHPLKDE---IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
               AG   H ++ E   +FEL+ E D       ++   S+ +H  + +E ++      E
Sbjct: 419 --MIAGYAQHGVEVESLRLFELMLEKDIAPNSITFIAVLSACVHTGKVEEGQKYFNMMKE 476

Query: 545 RLAV 548
           R  +
Sbjct: 477 RFCI 480


>gi|297739586|emb|CBI29768.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 217/603 (35%), Positives = 319/603 (52%), Gaps = 67/603 (11%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+VCA    A+  + +H Q+++ G      +   L+D Y KC  +  AH + + M  RD 
Sbjct: 139 LKVCASELGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDV 198

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V W +++T Y QA  P K + +F  M   +    D     S+  A G LG  R+      
Sbjct: 199 VCWTAMITLYEQAERPLKALMLFRKMQE-EGFLGDEITAISVASAVGQLGDGRMA----- 252

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                                      + AR VFD ++ +N +SW +MLS Y ++GR  D
Sbjct: 253 --------------------------ISRARLVFDRMEERNGISWNSMLSGYTQNGRPTD 286

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +F Q                    +E D                +P+    +V AC+
Sbjct: 287 ALSLFNQMQA-----------------SECDP---------------NPVTALIMVSACS 314

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG--RMRRKDVVSW 307
                 LG+++H  VI+   +    + NAI+DMY KC D+  A ++F    +  +DV SW
Sbjct: 315 YLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMKCGDLDTAVEMFNNCELGERDVSSW 374

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
             +I G   HG  +E L L+  M   GV+PN++TF  ++ ACSH GL+ +GRK F  M +
Sbjct: 375 NVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFTSILSACSHAGLIDEGRKCFADMTK 434

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
              + P ++HY C++D+L R+G L+EA  LIK +P  P +  W ALL AC+ H NTE+G 
Sbjct: 435 -LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPSRPSDEVWGALLLACRIHGNTELGE 493

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
             AN+L  L+PE    Y+L+SN+YA++  W+ V  VR+ M    +KK   +S IEFG   
Sbjct: 494 IAANNLFQLEPEHTGYYVLMSNIYAASNKWKEVEMVRQNMKSRGLKKPAAFSVIEFGTEV 553

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
           H F+  + S P   E++  +  L  EMK  GYVPD S VLHD+E ++KE  L +HSE+LA
Sbjct: 554 HGFHTADQSSPYYREVYRKVESLAIEMKMVGYVPDLSCVLHDVEPEDKEHLLNYHSEKLA 613

Query: 548 VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
           VA+G++K   G  ++V KNLRVC DCH   K IS I  R+I+VRD  R+HHF+ G+CSC 
Sbjct: 614 VAFGIMKMDQGMPIQVTKNLRVCSDCHWAFKFISSIYGRKIIVRDGNRFHHFQGGRCSCG 673

Query: 608 DFW 610
           D+W
Sbjct: 674 DYW 676



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/359 (26%), Positives = 163/359 (45%), Gaps = 59/359 (16%)

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC-DDDVVKSSLVDMYAKC 153
           +LAL  L   H  +  L++ C SL   +L   +H+      F        + L+ +Y+K 
Sbjct: 18  VLALPSL---HHFYDHLLQCCTSLTTLKL---IHSSLSTRGFLLHTPHFLARLIILYSKL 71

Query: 154 GLPNNARAVFDS--------IKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLW 205
           G  ++AR +FD          +  NS     ML AYA +GR  +A++++           
Sbjct: 72  GDLHSARTLFDHRHHHHHGHTQAPNSFLCNTMLRAYANAGRSYEAIDLY----------- 120

Query: 206 TALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265
                               I M+R GV  V+      ++  CA+      G+ +HG V+
Sbjct: 121 --------------------IYMQRMGVG-VNNFTYPFVLKVCASELGAVFGEVVHGQVV 159

Query: 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA 325
             G+ S LF+  A+VDMYAKC +I  A ++F RM  +DVV WT++I    Q  +  + L 
Sbjct: 160 RTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALM 219

Query: 326 LYDEMVSAGVKPNEVTFVGLIYACSHVG----LVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           L+ +M   G   +E+T + +  A   +G     + + R +F  M E  GI+     +  +
Sbjct: 220 LFRKMQEEGFLGDEITAISVASAVGQLGDGRMAISRARLVFDRMEERNGIS-----WNSM 274

Query: 382 LDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
           L   +++G   +A +L   M     +P+  T   ++SAC +  +  +G ++ N ++S K
Sbjct: 275 LSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSK 333


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 214/602 (35%), Positives = 334/602 (55%), Gaps = 34/602 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR  A        + +H   +K GL ++  +   L+  Y KC  +  A  L + M   D 
Sbjct: 219 LRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDL 278

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V++ ++++ Y+   + + ++ +F  + A    +P+     +++      G   L + +HA
Sbjct: 279 VAYNALISGYSVNGMVESSVELFKELTA-SGWRPNSSTLVAVIPVYSPFGHELLARCLHA 337

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V +    D +V ++L  +Y +     +AR++FD++  K   SW AM+S YA++G  + 
Sbjct: 338 FVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISGYAQNGLTEM 397

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +F+                L+Q  N                   +P+ +SS + ACA
Sbjct: 398 AVALFQ----------------LMQELNVQP----------------NPITISSTLSACA 425

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +   L LGK +H ++     E  +++  A++DMYAKC  I  A+ IF RM  K+VVSW +
Sbjct: 426 HLGALSLGKWVHRIISKEKLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNA 485

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G   HGQ  E L LY +M+ A + P   TF+ +IYACSH GLV +G+K+F+ M  +Y
Sbjct: 486 MISGYGLHGQGAEALKLYKDMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEY 545

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP-TWAALLSACKHHRNTEMGTR 428
            ITP ++H TC++DLL R+G L+EA  LI   P     P  W ALL AC  H+N+++   
Sbjct: 546 RITPGIEHCTCMVDLLGRAGKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKL 605

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            +  L  L  E+   Y+LLSN+Y S   +   + VR+     ++ K PG + IE G   H
Sbjct: 606 ASQKLFELDSENAGYYVLLSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLIEIGDRPH 665

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
           +F AG+  HP  + I+  L  L A+M   GY P T + L+D+E++EKE  +  HSE+LA+
Sbjct: 666 VFMAGDHLHPQSEAIYSYLERLTAKMIEAGYQPVTEAALYDVEEEEKEHMVKVHSEKLAI 725

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+GLL + PGT +R++KNLRVC DCH   K IS++T+R IVVRDA+R+HHF+DG CSC D
Sbjct: 726 AFGLLSTEPGTEIRIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGD 785

Query: 609 FW 610
           +W
Sbjct: 786 YW 787



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/466 (22%), Positives = 209/466 (44%), Gaps = 44/466 (9%)

Query: 15  RHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWAS 74
           R   A   +TLH   +  G      + + L   Y K      A  + + +P  D + W +
Sbjct: 126 RGNDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNT 185

Query: 75  ILTAYNQANLP-QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           +L     A LP  + +  F  M+   +++PD    AS ++A        +G+ VH   V 
Sbjct: 186 LL-----AGLPGSEALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMAMGRCVHGYGVK 240

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
               + + V + L+ +Y+KCG  ++A+ +FD +   + V++ A++S Y+ +G  + ++E+
Sbjct: 241 CGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVEL 300

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
           F++        W    S LV                             +++   + F  
Sbjct: 301 FKELTASG---WRPNSSTLV-----------------------------AVIPVYSPFGH 328

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
             L + +H  V+    ++   +S A+  +Y + +D+ +A+ IF  M  K + SW ++I G
Sbjct: 329 ELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAMISG 388

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
            AQ+G  E  +AL+  M    V+PN +T    + AC+H+G +  G+ + + +I    +  
Sbjct: 389 YAQNGLTEMAVALFQLMQELNVQPNPITISSTLSACAHLGALSLGKWVHR-IISKEKLEL 447

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
           ++   T L+D+ ++ G + EA ++   M    +  +W A++S    H       ++   +
Sbjct: 448 NVYVMTALIDMYAKCGSIAEARSIFDRMD-NKNVVSWNAMISGYGLHGQGAEALKLYKDM 506

Query: 434 LSLKPEDPSSYILLSNVYASA--AMWQHVSKVRKLMSVMEVKKEPG 477
           L  +   P+S   LS +YA +   +     KV ++M+  E +  PG
Sbjct: 507 LDARIL-PTSSTFLSVIYACSHGGLVDEGQKVFRVMT-NEYRITPG 550


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/588 (36%), Positives = 321/588 (54%), Gaps = 33/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHA+ +KL  H    +  +L+  Y +C L+  A  + +EMP    VSW +++TAY  A
Sbjct: 91  EQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDA 150

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ + +     A + ++PD F    ++ AC  +     G+ V              V
Sbjct: 151 GDLREAVHVARNAFA-NGMRPDSFTAVRVLTACARVADLATGETVWRAAEQEGIAQSVFV 209

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++ VD+Y KCG    AR VFD +                   R KDA+           
Sbjct: 210 ATAAVDLYVKCGEMAKAREVFDKM-------------------RDKDAVA---------- 240

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W A+V G   + +  +A   F+ M+ EGV   D   ++  + AC     L+LG+Q   
Sbjct: 241 --WGAMVGGYASNGHPREALDLFLAMQAEGVR-PDCYAVAGALSACTRLGALDLGRQAIR 297

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           +V    +     +  A++DMYAKC     A  +F +MR+KD++ W ++I+G    G  + 
Sbjct: 298 MVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKT 357

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
              L  +M  +GVK N+ TF+GL+ +C+H GL+  GR+ F +M + Y I+P ++HY C++
Sbjct: 358 AFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTKLYHISPRIEHYGCIV 417

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLLSR+G L EA  LI  MP   +     ALL  CK HRN E+   V   L+ L+P +  
Sbjct: 418 DLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAEHVLTQLIRLEPWNSG 477

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y++LSN+Y++   W+  +K+R  M    V+K P  S++EF    H F  G+ SHPL D+
Sbjct: 478 NYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFEGKVHEFRVGDKSHPLSDQ 537

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I++ L EL  EMK  GY P T  V+ D+E +EKE  L  HSE+LA+A+ LL + PG  +R
Sbjct: 538 IYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHSEKLAIAFNLLVTGPGETIR 597

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V KNLRVC DCH  +K+ISRIT REI+VRD  R+H F+DG CSCND+W
Sbjct: 598 VTKNLRVCSDCHTAIKLISRITHREIIVRDNNRFHCFRDGSCSCNDYW 645



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 93/187 (49%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CAR     T +T+     + G+ Q   +    +D Y KC  +  A  + ++M  +D 
Sbjct: 179 LTACARVADLATGETVWRAAEQEGIAQSVFVATAAVDLYVKCGEMAKAREVFDKMRDKDA 238

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W +++  Y     P++ + +F  M A + ++PD +  A  + AC  LGA  LG+Q   
Sbjct: 239 VAWGAMVGGYASNGHPREALDLFLAMQA-EGVRPDCYAVAGALSACTRLGALDLGRQAIR 297

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 F D+ V+ ++L+DMYAKCG    A  VF  ++ K+ + W AM+     +G +K 
Sbjct: 298 MVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVWNAMILGLGMTGHEKT 357

Query: 190 AMEIFEQ 196
           A  +  Q
Sbjct: 358 AFTLIGQ 364



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 2/163 (1%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L  G+Q+H   + L   +   +  +++ +YA+C  +  A+ +F  M     VSWT++I  
Sbjct: 87  LRAGEQLHARSLKLPSHTNPHVLTSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITA 146

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
               G   E + +     + G++P+  T V ++ AC+ V  +  G  ++++  E  GI  
Sbjct: 147 YMDAGDLREAVHVARNAFANGMRPDSFTAVRVLTACARVADLATGETVWRAA-EQEGIAQ 205

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           S+   T  +DL  + G + +A  +   M  + D   W A++  
Sbjct: 206 SVFVATAAVDLYVKCGEMAKAREVFDKM-RDKDAVAWGAMVGG 247


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 231/658 (35%), Positives = 352/658 (53%), Gaps = 72/658 (10%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  ++K+G      +   LIDAY     V  A  + +E+  +D VSW  ++ +Y + 
Sbjct: 66  RIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAEN 125

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF------ 136
           +   + +  FS M  +   +P++F FA ++KAC  L     GK VH   + + +      
Sbjct: 126 DCFSEALEFFSQM-RVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYV 184

Query: 137 ----------CDD--------------DVVK-SSLVDMYAKCG----------------- 154
                     C D              DV+  S ++  +A+ G                 
Sbjct: 185 GVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFV 244

Query: 155 LPNN--------ARAVFDSIKLKNSVSW--------------TAMLSAYARSGRKKDAME 192
           +PN         A A  +S+ L  ++                 A+++ YA+ G  + +ME
Sbjct: 245 IPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCIEQSME 304

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +FE    RN   W  ++   VQ  +   A   F  M R  V   + +  SSI+ ACA  A
Sbjct: 305 LFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATE-VTYSSILRACATLA 363

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
            LELG Q+H L     Y   + + NA++DMYAKC  I  A+ +F  +  +D VSW +II 
Sbjct: 364 ALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIIC 423

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G + HG   E + +++ M     KP+E+TFVG++ ACS+ G + +G++ F SM +DYGI 
Sbjct: 424 GYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMKQDYGIE 483

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
           P ++HYTC++ L+ RSG+LD+A   I+ +PFEP    W ALL AC  H + E+G   A  
Sbjct: 484 PCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELGRISAQR 543

Query: 433 LLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYA 492
           +L L+P D +S++LLSN+YA A  W +V+ VRK M    VKKEPG S+IE     H F  
Sbjct: 544 VLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIENQGNVHCFTV 603

Query: 493 GETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGL 552
            +TSH     I  +L  L+ + ++ GY P  ++VL D+E  EKER L+ HSERLA+A+GL
Sbjct: 604 ADTSHADLKLINGMLEFLNMKTRKAGYSPQLNAVLLDVEDDEKERLLWLHSERLALAFGL 663

Query: 553 LKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++   G  +R++KNLR+C DCH V+K+IS+I  R+I+VRD  R+HHF++G CSC D+W
Sbjct: 664 VRMPAGCPIRIIKNLRICVDCHSVIKLISKIVGRDIIVRDMNRFHHFENGSCSCADYW 721



 Score =  142 bits (357), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 115/472 (24%), Positives = 203/472 (43%), Gaps = 105/472 (22%)

Query: 60  LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD-KLQPDHFVFASLVKACGSL 118
           + +EMP+R+ VS+ +++  Y Q+N   +   +F+ +     +L P  FVF +++K   S+
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNP--FVFTTVLKLLVSM 59

Query: 119 GATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAML 178
               LG+ VH C +   +  +  + ++L+D Y+  G  + AR VFD I  K+ VSWT M+
Sbjct: 60  EWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMI 119

Query: 179 SAYARSGRKKDAMEIFEQAPV--------------------------------------- 199
           ++YA +    +A+E F Q  V                                       
Sbjct: 120 ASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYE 179

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEM------------------------------R 229
           R+L++   L+    +  +  DA+ +F +M                               
Sbjct: 180 RDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQM 239

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289
           R    I +    SS++ A A+   L+L K IHG  +  G  + +F+SNA++  YAKC  I
Sbjct: 240 RRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMACYAKCGCI 299

Query: 290 IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349
             + ++F  +  ++ VSW +IIV   Q G  E  L+L+  M+   V+  EVT+  ++ AC
Sbjct: 300 EQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRAC 359

Query: 350 SHVG---------------LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL--------- 385
           + +                + G+   +  ++I+ Y    S++    + D+L         
Sbjct: 360 ATLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWN 419

Query: 386 ------SRSGHLDEA---ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
                 S  G   EA    NL+K    +PDE T+  +LSAC +    + G +
Sbjct: 420 AIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQ 471



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 9/107 (8%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           LT KT++ Q + +G        N LID Y KC  ++ A  + + +  RD VSW +I+  Y
Sbjct: 374 LTAKTIYGQDVAVG--------NALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGY 425

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           +   L  + I +F+ M    K +PD   F  ++ AC + G    GKQ
Sbjct: 426 SMHGLGVEAIKMFNLMKE-TKCKPDELTFVGVLSACSNTGRLDEGKQ 471


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 215/607 (35%), Positives = 335/607 (55%), Gaps = 54/607 (8%)

Query: 55  QYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA 114
           + A  L +++  RD +SW S+++ Y    L ++ + I+  M+ L  +  D     S++  
Sbjct: 64  ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG-IDVDLATIISVLVG 122

Query: 115 CGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSW 174
           C   G   LGK VH+  + S F       ++L+DMY+KCG  + A  VF+ +  +N VSW
Sbjct: 123 CAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 182

Query: 175 TAMLSAYARSGRKKDAMEIFEQAP------------------------------------ 198
           T+M++ Y R G    A+ + +Q                                      
Sbjct: 183 TSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 242

Query: 199 ---VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-----------DPLVLSSI 244
                NLF+  AL+    +  +   A   F  M  +  DI+           D   ++ I
Sbjct: 243 NNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVK--DIISWNTMVGELKPDSRTMACI 300

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + ACA+ + LE GK+IHG ++  GY S   ++NA+VD+Y KC  +  A+ +F  +  KD+
Sbjct: 301 LPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDL 360

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           VSWT +I G   HG   E +A ++EM  AG++P+EV+F+ ++YACSH GL+ +G + F  
Sbjct: 361 VSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYI 420

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           M  D+ I P L+HY C++DLLSR+G+L +A   I+ +P  PD   W ALL  C+ + + E
Sbjct: 421 MKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIE 480

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +  +VA  +  L+PE+   Y+LL+N+YA A  W+ V ++R+ +    ++K PG S+IE  
Sbjct: 481 LAEKVAERVFELEPENTGYYVLLANIYAEAEKWEEVKRMREKIGKKGLRKNPGCSWIEIK 540

Query: 485 KGSHIFYAG-ETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
              ++F +G  +SHP   +I  LL ++  +MK  GY P T   L + ++ +KE  L  HS
Sbjct: 541 GRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHS 600

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           E+LA+A+GLL   P   +RV KNLRVCGDCH + K +S+ T+REIV+RD+ R+HHFKDG 
Sbjct: 601 EKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGY 660

Query: 604 CSCNDFW 610
           CSC  FW
Sbjct: 661 CSCRGFW 667



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 153/322 (47%), Gaps = 35/322 (10%)

Query: 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG-------------------- 185
           LV  YA CG     R VFD+++ KN   W  M+S YA+ G                    
Sbjct: 2   LVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGK 61

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
           R + A E+F++   R++  W +++SG V +         + +M   G+D+    ++S +V
Sbjct: 62  RSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLV 121

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
           G CA    L LGK +H L I   +E  +  SN ++DMY+KC D+  A  +F +M  ++VV
Sbjct: 122 G-CAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVV 180

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SWTS+I G  + G ++  + L  +M   GVK + V    +++AC+  G +  G+ +    
Sbjct: 181 SWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV-HDY 239

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-------------PFEPDEPTWAA 412
           I+   +  +L     L+D+ ++ G ++ A ++   M               +PD  T A 
Sbjct: 240 IKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMAC 299

Query: 413 LLSACKHHRNTEMGTRVANHLL 434
           +L AC      E G  +  ++L
Sbjct: 300 ILPACASLSALERGKEIHGYIL 321



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 123/294 (41%), Gaps = 51/294 (17%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA+       K +H+  IK    +     NTL+D Y KC  +  A  + E+M +R+ VSW
Sbjct: 123 CAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 182

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            S++  Y +       I +   M   + ++ D     S++ AC   G+   GK VH    
Sbjct: 183 TSMIAGYTRDGWSDGAIILLQQM-EKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 241

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAM--------------- 177
            +    +  V ++L+DMYAKCG    A +VF ++ +K+ +SW  M               
Sbjct: 242 ANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACIL 301

Query: 178 -----LSA-----------------------------YARSGRKKDAMEIFEQAPVRNLF 203
                LSA                             Y + G    A  +F+  P ++L 
Sbjct: 302 PACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLV 361

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
            WT +++G        +A  +F EMR  G++  D +   SI+ AC++  +LE G
Sbjct: 362 SWTVMIAGYGMHGYGNEAIATFNEMRDAGIE-PDEVSFISILYACSHSGLLEQG 414



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 1/115 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K +H  I++ G      + N L+D Y KC ++  A  L + +P +D 
Sbjct: 301 LPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDL 360

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           VSW  ++  Y       + I+ F+ M     ++PD   F S++ AC   G    G
Sbjct: 361 VSWTVMIAGYGMHGYGNEAIATFNEMRDAG-IEPDEVSFISILYACSHSGLLEQG 414


>gi|302785461|ref|XP_002974502.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
 gi|300158100|gb|EFJ24724.1| hypothetical protein SELMODRAFT_101093 [Selaginella moellendorffii]
          Length = 615

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 212/601 (35%), Positives = 330/601 (54%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +R CA  +     + +H  +    L +   L N L+D YGKC  +  A  + + M  ++ 
Sbjct: 48  IRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDMYGKCGSLVEAKRVFDAMQHKNV 107

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW  ++  + Q+    + I +F  M    +L PD       + +CG+  A   G+++H+
Sbjct: 108 FSWTMLMAGFVQSGRGVEAIQLFHRMCQEGEL-PDRVALLKFIDSCGAAKALSQGREIHS 166

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                    D V  +++++MY KCG          SI                      +
Sbjct: 167 AAASCGMDSDLVTANAIINMYGKCG----------SIG---------------------E 195

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F + P +N+  W+ +++   Q+    +A   F  M++EG+++ D +   S++ A  
Sbjct: 196 AFAVFTRMPEKNVISWSTMIAAFCQNELADEALLFFKLMQQEGMEL-DRITYVSVLDAYT 254

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +   LELGK +H  ++  G ++ + + N +V+MY KC     A+D+F  M  K+VVSW +
Sbjct: 255 SVGALELGKALHVRIVYAGLDTSIVVGNTLVNMYGKCGSPDDARDVFDSMVEKNVVSWNA 314

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           ++    Q+G++ E LAL+D M   GV+PN++TFV ++Y CSH G        F  M +D+
Sbjct: 315 MLAAYGQNGRSREALALFDSMDLEGVRPNDITFVTILYCCSHSGKFKDAVSHFVEMRQDF 374

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GITP   H+ CL+D+L RSG L+EAE LI+AMP   D   W +LL AC  H++ +   R 
Sbjct: 375 GITPREVHFGCLIDMLGRSGKLEEAEELIQAMPVPADAVLWTSLLCACVTHKDEDRAARA 434

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A      +P   ++YI+LSN+YA+   W   +KVRK M    V+K+ G S+IE  K  H 
Sbjct: 435 AEEAFQREPRCAAAYIMLSNLYAALKKWDEAAKVRKRMEQAGVRKQAGRSWIEIDKQVHE 494

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F AG++ HP K  IF+ L  L +EM+ +GY PD   V+H ME++EK+  LF+HSE+LAVA
Sbjct: 495 FVAGDSIHPDKSRIFKTLQRLMSEMRIKGYEPDRKVVIHSMEEEEKDEVLFYHSEKLAVA 554

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +G+  + P T L +VKNLRVC DCH  +K IS +  R I VRD+ R+HHF  G+CSC D+
Sbjct: 555 FGIASTPPRTPLCIVKNLRVCSDCHSAIKFISGVEGRRITVRDSNRFHHFDRGECSCGDY 614

Query: 610 W 610
           W
Sbjct: 615 W 615



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 97/194 (50%), Gaps = 9/194 (4%)

Query: 230 REGVDIVDPLV-------LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
           RE VD+++          L  ++  CA    LE G++IH  + +   +   F+SN +VDM
Sbjct: 26  REAVDLLEQSGAAGGTGDLEQLIRRCAGAKALEEGRRIHRWMDSGTLDRPRFLSNLLVDM 85

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           Y KC  ++ AK +F  M+ K+V SWT ++ G  Q G+  E + L+  M   G  P+ V  
Sbjct: 86  YGKCGSLVEAKRVFDAMQHKNVFSWTMLMAGFVQSGRGVEAIQLFHRMCQEGELPDRVAL 145

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
           +  I +C     + +GR++  S     G+   L     ++++  + G + EA  +   MP
Sbjct: 146 LKFIDSCGAAKALSQGREI-HSAAASCGMDSDLVTANAIINMYGKCGSIGEAFAVFTRMP 204

Query: 403 FEPDEPTWAALLSA 416
            E +  +W+ +++A
Sbjct: 205 -EKNVISWSTMIAA 217


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  407 bits (1046), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 223/591 (37%), Positives = 327/591 (55%), Gaps = 56/591 (9%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFST-----ML 96
           N +I ++    LV  A H  +  P++D VSW  +L AY +    ++   +F++     ++
Sbjct: 135 NVMISSHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVI 194

Query: 97  ALDKLQPDHFVFASLVKACGSL----------------GATRLGKQVHA--CFVLSPFCD 138
           + + L   +  +  + +A                    G  R G  V A   F  +P   
Sbjct: 195 SWNALMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAP-VR 253

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D    +++V  YA+ G+   AR VFD++  +N+VSW AM++AY +     +A E+F   P
Sbjct: 254 DVFTWTAVVSGYAQNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDEAKELFNMMP 313

Query: 199 VRNLFLWTALVSGLVQ--------------------SRNEIDAFYS-----------FIE 227
            RN+  W  +++G  Q                    S   + A YS           FIE
Sbjct: 314 CRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIE 373

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M R G + V+    + ++  CA+ A LE G Q+HG +I  GY    F+ NA++ MY KC 
Sbjct: 374 MGRCG-EWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNALLAMYFKCG 432

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
           ++  A++ F  M  +DVVSW ++I G A+HG  +E L ++D M +   KP+++T VG++ 
Sbjct: 433 NMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDDITLVGVLA 492

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           ACSH GLV KG   F SM  D+G+T   +HYTC++DLL R+G L EA +L+K MPFEPD 
Sbjct: 493 ACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMKDMPFEPDS 552

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
             W ALL A + HRN E+G   A  +  L+PE+   Y+LLSN+YAS+  W+   K+R +M
Sbjct: 553 TMWGALLGASRIHRNPELGRSAAEKIFELEPENAGMYVLLSNIYASSGKWRDARKMRVMM 612

Query: 468 SVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
               VKK PG+S+IE     H F AG+  HP K++I+  L +LD  MK+ GYV  T  VL
Sbjct: 613 EERGVKKVPGFSWIEVQNKVHTFSAGDCVHPEKEKIYAFLEDLDMRMKKAGYVSATDMVL 672

Query: 528 HDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
           HD+E++EKE  L +HSE+LAVAYG+L   PG  +RV+KNLRVCGDCH   K
Sbjct: 673 HDVEEEEKEHMLKYHSEKLAVAYGILNIPPGRPIRVIKNLRVCGDCHNAFK 723



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 190/404 (47%), Gaps = 28/404 (6%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NTL+ A      +  A  L +EMP RD V++  +++++    L       F        L
Sbjct: 104 NTLLHALAVSSSLADARGLFDEMPVRDSVTYNVMISSHANHGLVSLARHYFD-------L 156

Query: 102 QPDHFVFASLVKACGSLGA-TRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNA 159
            P+       V   G L A  R G+   A  + +   + DV+  ++L+  Y + G  + A
Sbjct: 157 APEK----DAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEA 212

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           R +FD +  ++ VSW  M+S YAR G   +A  +F+ APVR++F WTA+VSG  Q+    
Sbjct: 213 RELFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLE 272

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           +A   F  M        + +  +++V A     +++  K++  ++      S     N +
Sbjct: 273 EARRVFDAMPER-----NAVSWNAMVAAYIQRRMMDEAKELFNMMPCRNVASW----NTM 323

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           +  YA+   +  AK +F  M +KD VSW +++   +Q G +EETL L+ EM   G   N 
Sbjct: 324 LTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCSEETLQLFIEMGRCGEWVNR 383

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIE-DYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
             F  ++  C+ +  +  G +L   +I   YG+   + +   LL +  + G++++A N  
Sbjct: 384 SAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGN--ALLAMYFKCGNMEDARNAF 441

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL--LSLKPED 440
           + M  E D  +W  +++    H   +    + + +   S KP+D
Sbjct: 442 EEME-ERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDD 484



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 165/375 (44%), Gaps = 59/375 (15%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N  I A+ +   V  A  L   MP+R   ++ ++L  Y+         S+F  +      
Sbjct: 42  NKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRAI-----P 96

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PD++ + +L+ A   L  +         F   P   D V  + ++  +A  GL + AR 
Sbjct: 97  RPDNYSYNTLLHA---LAVSSSLADARGLFDEMP-VRDSVTYNVMISSHANHGLVSLARH 152

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
            FD    K++VSW  ML+AY R+GR ++A  +F      ++  W AL+SG VQ     +A
Sbjct: 153 YFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQWGKMSEA 212

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M   G D+V                                        N +V 
Sbjct: 213 RELFDRM--PGRDVVS--------------------------------------WNIMVS 232

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
            YA+  D++ A+ +F     +DV +WT+++ G AQ+G  EE   ++D M     + N V+
Sbjct: 233 GYARRGDMVEARRLFDAAPVRDVFTWTAVVSGYAQNGMLEEARRVFDAM----PERNAVS 288

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           +  ++ A     ++ + ++LF  M        ++  +  +L   +++G L+EA+ +   M
Sbjct: 289 WNAMVAAYIQRRMMDEAKELFNMM-----PCRNVASWNTMLTGYAQAGMLEEAKAVFDTM 343

Query: 402 PFEPDEPTWAALLSA 416
           P + D  +WAA+L+A
Sbjct: 344 P-QKDAVSWAAMLAA 357



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/332 (21%), Positives = 150/332 (45%), Gaps = 25/332 (7%)

Query: 138 DDDVVKSS-LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           + +V++S+  +  + + G   +A  +F ++  +++ ++ AML+ Y+ +GR   A  +F  
Sbjct: 35  EPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFRA 94

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
            P  + + +  L+  L  S +  DA   F EM      + D +  + ++ + AN  ++ L
Sbjct: 95  IPRPDNYSYNTLLHALAVSSSLADARGLFDEM-----PVRDSVTYNVMISSHANHGLVSL 149

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
            +        L  E      N ++  Y +   +  A+ +F      DV+SW +++ G  Q
Sbjct: 150 ARHY----FDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALMSGYVQ 205

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
            G+  E   L+D M    V    V++  ++   +  G + + R+LF     D      + 
Sbjct: 206 WGKMSEARELFDRMPGRDV----VSWNIMVSGYARRGDMVEARRLF-----DAAPVRDVF 256

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
            +T ++   +++G L+EA  +  AMP E +  +W A+++A    R  +     A  L ++
Sbjct: 257 TWTAVVSGYAQNGMLEEARRVFDAMP-ERNAVSWNAMVAAYIQRRMMD----EAKELFNM 311

Query: 437 KP-EDPSSYILLSNVYASAAMWQHVSKVRKLM 467
            P  + +S+  +   YA A M +    V   M
Sbjct: 312 MPCRNVASWNTMLTGYAQAGMLEEAKAVFDTM 343


>gi|302780908|ref|XP_002972228.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
 gi|300159695|gb|EFJ26314.1| hypothetical protein SELMODRAFT_97343 [Selaginella moellendorffii]
          Length = 487

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/510 (39%), Positives = 307/510 (60%), Gaps = 32/510 (6%)

Query: 103 PDHFVFASLVKACG-SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           PD   F + + ACG +L   RLGK +H+C + +    + VV ++LV+MY K G  + A  
Sbjct: 8   PDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAGCLDEATR 67

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF  ++ K+ VSWTA++SAY+R    ++A+++F +  +  L        G    R+    
Sbjct: 68  VFRGLERKDLVSWTALMSAYSREDLYREALQLFREMTLHGL-------DGTKPDRS---- 116

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC-LFISNAIV 280
           +++F                  ++ ACA  +    G+  H  +   GY+S    +   I+
Sbjct: 117 YFAF------------------LLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGII 158

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           +MY KC ++ AA ++F  M  +D V+WT+II G A HG +EE+L ++  M   G KP+ V
Sbjct: 159 NMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGV 218

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           + + ++  CSH GLV +G   F  + +++G+ P  +HY C++DLL RSG L+ AE +I+ 
Sbjct: 219 SLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRR 278

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           MPF+     WA  L+ACK H +TE G R A  +L L+P  P++Y+ LSN+YA+A  W  V
Sbjct: 279 MPFQATAMNWAIFLAACKVHSDTERGKRAAEKVLELEPV-PAAYVSLSNIYAAAGEWDQV 337

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
            +VR  M  M ++K+PG S IE     H F+AG+ SHP   EI+ LL  L  +M+  GYV
Sbjct: 338 DRVRSAMKAMGLQKDPGRSSIEVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYV 397

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           PDT  VL ++ +++KER L +HSE+LA+A+GLL +  G+ LR++KNLRVCGDCH   K +
Sbjct: 398 PDTKLVLLNVSEEQKERLLCFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFV 457

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           SRI  REI +RD+ R+HHF+DG CSC D+W
Sbjct: 458 SRIAGREIFMRDSQRFHHFQDGHCSCGDYW 487



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 96/175 (54%), Gaps = 3/175 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H+ +++ GL     +   L++ YGK   +  A  +   + ++D VSW ++++AY++ 
Sbjct: 31  KLIHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRVFRGLERKDLVSWTALMSAYSRE 90

Query: 83  NLPQKTISIFSTML--ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF-CDD 139
           +L ++ + +F  M    LD  +PD   FA L++AC +L A   G+  H       +   D
Sbjct: 91  DLYREALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSD 150

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
            V+   +++MY KCG    A  VFD +  +++V+WT ++S YA  G  ++++ +F
Sbjct: 151 GVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMF 205



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 90/206 (43%), Gaps = 14/206 (6%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQY-GPLPNTLIDAYGKCDLVQYAHHLLE 62
           S++   L+ CA    A   +  H +I + G     G L   +I+ YGKC  ++ AH + +
Sbjct: 116 SYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFD 175

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
            M +RD V+W +I++ Y      ++++ +F  M   D  +PD      ++  C   G   
Sbjct: 176 GMSERDTVAWTTIISGYAHHGHSEESLLMFWRM-QQDGSKPDGVSLLCVLSVCSHAGLVE 234

Query: 123 LG----KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAM 177
            G      +   F + P    +     ++D+  + G    A  +   +  +  +++W   
Sbjct: 235 QGWDFFLDITKEFGVEP---GEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIF 291

Query: 178 LSA---YARSGRKKDAME-IFEQAPV 199
           L+A   ++ + R K A E + E  PV
Sbjct: 292 LAACKVHSDTERGKRAAEKVLELEPV 317


>gi|297804658|ref|XP_002870213.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316049|gb|EFH46472.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/595 (38%), Positives = 335/595 (56%), Gaps = 39/595 (6%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LHA  +KLG        N L+++Y K   +  A  + +EM + + VSW S+++ YN    
Sbjct: 44  LHALTLKLGFASNTFTVNHLVNSYVKLKEINTARKVFDEMCEPNVVSWTSVISGYNDMGQ 103

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           PQ  +S+F  M     + P+ + FAS+ KAC +L  +R+GK +HA   +S    + VV S
Sbjct: 104 PQTALSMFQEMHEDRSVPPNEYTFASVFKACSALAESRIGKNIHARLEVSGLRRNIVVSS 163

Query: 145 SLVDMYAKCGLPNNARAVFDSI--KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           SLVDMY KC     AR VFDS+    +N VSWT+M++AYA++ R  +A            
Sbjct: 164 SLVDMYGKCNDVEMARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEA------------ 211

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                           I+ F SF        D  +  +L+S++ A ++   L+ G+  HG
Sbjct: 212 ----------------IELFRSF--NADSTSDRPNQFMLASVINASSSLGRLQWGQISHG 253

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           LV   GYES   ++ +++DMYAKC  +  A+ IF R+R   V+S+TS+I+  A+HG  E 
Sbjct: 254 LVTRGGYESNNVVATSLLDMYAKCGSLTCAEKIFFRIRCHSVISYTSMIMAKAKHGLGEA 313

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L+DEMV+  +KPN VT +G+++ACSH GLV +G +   SM E YG+ P  +HYTC++
Sbjct: 314 ALQLFDEMVAGRIKPNYVTLLGVLHACSHSGLVNEGLEFLNSMAEKYGVIPDSRHYTCVV 373

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPT--WAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           D+L R G +DEA +L K +    ++    W ALLSA + H   E+ +  +  L+    + 
Sbjct: 374 DMLGRFGRVDEAYDLAKTIDVGAEQGALLWGALLSAGRLHGRVEIVSEASKRLIQSNQQV 433

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
            S+YI LSN YA A  W+    +R  M      KE   S+IE     ++F+AG+ S    
Sbjct: 434 TSAYIALSNAYAVAGGWEDSESLRLEMKRSGNVKERACSWIENKDSVYVFHAGDLSCDES 493

Query: 501 DEIFELLTELDAEMKRRGY-----VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKS 555
            EI   L  L+  MK RG+     +  +SSV  D++++ KE  +  H ERLA+AYGLL  
Sbjct: 494 GEIKRFLKNLENRMKERGHRGSSSMITSSSVFVDVDEEAKEEMVSLHCERLALAYGLLHL 553

Query: 556 VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             G+ +R++ NLR+C DCH   K+IS I +REIVVRD  R+H FK+G C+C DFW
Sbjct: 554 PAGSTIRIMNNLRMCRDCHEAFKLISEIVEREIVVRDVNRFHCFKNGSCTCRDFW 608



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 102/177 (57%), Gaps = 3/177 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTAYN 80
           K +HA++   GL +   + ++L+D YGKC+ V+ A  + + M    R+ VSW S++TAY 
Sbjct: 144 KNIHARLEVSGLRRNIVVSSSLVDMYGKCNDVEMARRVFDSMIGYGRNVVSWTSMITAYA 203

Query: 81  QANLPQKTISIFSTMLALDKL-QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
           Q     + I +F +  A     +P+ F+ AS++ A  SLG  + G+  H       +  +
Sbjct: 204 QNARGHEAIELFRSFNADSTSDRPNQFMLASVINASSSLGRLQWGQISHGLVTRGGYESN 263

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           +VV +SL+DMYAKCG    A  +F  I+  + +S+T+M+ A A+ G  + A+++F++
Sbjct: 264 NVVATSLLDMYAKCGSLTCAEKIFFRIRCHSVISYTSMIMAKAKHGLGEAALQLFDE 320



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 106/215 (49%), Gaps = 8/215 (3%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L L   +H L + LG+ S  F  N +V+ Y K  +I  A+ +F  M   +VVSWTS+I G
Sbjct: 38  LFLTNLLHALTLKLGFASNTFTVNHLVNSYVKLKEINTARKVFDEMCEPNVVSWTSVISG 97

Query: 314 TAQHGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
               GQ +  L+++ EM     V PNE TF  +  ACS +     G+ +  + +E  G+ 
Sbjct: 98  YNDMGQPQTALSMFQEMHEDRSVPPNEYTFASVFKACSALAESRIGKNI-HARLEVSGLR 156

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSA-CKHHRNTEMGTRVA 430
            ++   + L+D+  +   ++ A  +  +M  +  +  +W ++++A  ++ R  E      
Sbjct: 157 RNIVVSSSLVDMYGKCNDVEMARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIELFR 216

Query: 431 NHLLSLKPEDPSSYILLSNVYASAAM----WQHVS 461
           +       + P+ ++L S + AS+++    W  +S
Sbjct: 217 SFNADSTSDRPNQFMLASVINASSSLGRLQWGQIS 251


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/582 (36%), Positives = 332/582 (57%), Gaps = 35/582 (6%)

Query: 30  IKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTI 89
           +K+G H +  +   L   Y KC  ++ A  L  ++ Q D VS+ ++++ Y   N  + ++
Sbjct: 234 MKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSV 293

Query: 90  SIFSTML-ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVD 148
            +F  +L + +K+     V   L+      G   L + +H       FC    V S+   
Sbjct: 294 RLFKELLVSGEKVNSSSIV--GLIPVFFPFGHLHLTRCIHG------FCTKSGVVSN--- 342

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
                                 S   TA+ + Y+R    + A  +F+++  ++L  W A+
Sbjct: 343 ----------------------SSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAM 380

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
           +SG  Q+     A   F EM++  V   +P+ ++SI+ ACA    L LGK +H L+    
Sbjct: 381 ISGYAQNGLTEKAISLFQEMQKCEVR-PNPVTVTSILSACAQLGALSLGKWVHDLINRES 439

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
           +ES +F+S A++DMYAKC  I  A+ +F  M  K+ V+W ++I G   HG   E L L++
Sbjct: 440 FESNIFVSTALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFN 499

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
           EM+ + V P  VTF+ ++YACSH GLV +G ++F+SM+ D+G  P  +HY C++DLL R+
Sbjct: 500 EMLHSRVSPTGVTFLSVLYACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRA 559

Query: 389 GHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
           G+LD+A + I+ MP EP  P W ALL AC  H++  +    ++ L  L P++   Y+LLS
Sbjct: 560 GNLDKALDFIRKMPVEPGPPVWGALLGACMIHKDANLARLASDKLFELDPQNVGYYVLLS 619

Query: 449 NVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLT 508
           N+Y++   +   + VR ++   ++ K PG + IE     HIF +G+ SHP    I+ +L 
Sbjct: 620 NIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYAMLE 679

Query: 509 ELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLR 568
           +L  +M+  G+  +T + LHD+E++EKE  +  HSE+LA+A+GL+ S PGT +R++KNLR
Sbjct: 680 KLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIKNLR 739

Query: 569 VCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           VC DCH   K IS+IT+R IVVRDA R+HHFKDG CSC D+W
Sbjct: 740 VCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 186/424 (43%), Gaps = 40/424 (9%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           + ++  Y K   V  A  + + M +RD V W ++++   + +   + I IF  M+    +
Sbjct: 145 SAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVK-GGI 203

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             D    A+++     L    LG  +    +   F     V + L  +Y+KCG    AR 
Sbjct: 204 GFDSTTVAAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARL 263

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F  I   + VS+ AM+S Y  +   + ++ +F++  V    + ++ + GL      I  
Sbjct: 264 LFGQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGL------IPV 317

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
           F+                           F  L L + IHG     G  S   +S A+  
Sbjct: 318 FFP--------------------------FGHLHLTRCIHGFCTKSGVVSNSSVSTALTT 351

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           +Y++ ++I +A+ +F     K + SW ++I G AQ+G  E+ ++L+ EM    V+PN VT
Sbjct: 352 VYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVT 411

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
              ++ AC+ +G +  G K    +I       ++   T L+D+ ++ G + EA+ L   M
Sbjct: 412 VTSILSACAQLGALSLG-KWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMM 470

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           P E +  TW A++S    H        + N +L  +   P+    LS +YA +    H  
Sbjct: 471 P-EKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRV-SPTGVTFLSVLYACS----HAG 524

Query: 462 KVRK 465
            VR+
Sbjct: 525 LVRE 528



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 120/522 (22%), Positives = 214/522 (40%), Gaps = 96/522 (18%)

Query: 11  RVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHV 70
           RV   HQ+  T    HAQII  GLH        L         +  A  L   +P  D  
Sbjct: 19  RVSTLHQLNQT----HAQIILNGLHNDLVTVTKLTHKLSHLKAIDQASLLFSTIPNPDLF 74

Query: 71  SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC 130
            +  ++ A++  N P   +S+++ +     L+PD+F +A ++    SLG   L       
Sbjct: 75  LYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGLLLHAHS-- 132

Query: 131 FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
            +++ F  D  V S++V  Y K      AR VFD            ML            
Sbjct: 133 -IVAGFGSDLFVGSAIVACYFKFSRVAAARKVFD-----------GMLE----------- 169

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
                    R+  LW  +VSGLV++    +A   F +M + G+   D   +++++   A 
Sbjct: 170 ---------RDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGF-DSTTVAAVLPGVAE 219

Query: 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
              L LG  I  L + +G+ S  ++   +  +Y+KC +I  A+ +FG++ + D+VS+ ++
Sbjct: 220 LQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAM 279

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI---YACSHVGL------------- 354
           I G   + + E ++ L+ E++ +G K N  + VGLI   +   H+ L             
Sbjct: 280 ISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGV 339

Query: 355 -------------------VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
                              +   R LF    E      SL  +  ++   +++G  ++A 
Sbjct: 340 VSNSSVSTALTTVYSRLNEIESARLLFDESSEK-----SLASWNAMISGYAQNGLTEKAI 394

Query: 396 NLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           +L + M      P+  T  ++LSAC       +G  V + +     E        SN++ 
Sbjct: 395 SLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFE--------SNIFV 446

Query: 453 SAAMWQ------HVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
           S A+         +++ ++L S+M  K    ++ +  G G H
Sbjct: 447 STALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLH 488


>gi|296083798|emb|CBI24015.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/589 (36%), Positives = 328/589 (55%), Gaps = 55/589 (9%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           +K  H+QII+LGL       +   DA G+  ++++       + +  ++ W         
Sbjct: 36  LKQYHSQIIRLGL-------SADNDAMGR--VIKFC-----AISKSGYLRW--------- 72

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
             L +  I ++S ML    + P+ F +  L++AC    A   GKQ+HA  +   F  D  
Sbjct: 73  -QLARNCIFMYSRMLH-KSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHVLKFGFGADGF 130

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
             ++L+ MY        AR VFD++  ++                             RN
Sbjct: 131 SLNNLIHMYVNFQSLEQARRVFDNMPQRD-----------------------------RN 161

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
              W A+++  VQS    +AF  F  MR E V ++D  V +S++ AC     LE GK IH
Sbjct: 162 SVSWNAMIAAYVQSNRLHEAFALFDRMRLENV-VLDKFVAASMLSACTGLGALEQGKWIH 220

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           G +   G E    ++  ++DMY KC  +  A ++F  + +K + SW  +I G A HG+ E
Sbjct: 221 GYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKGE 280

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
             + L+ EM    V P+ +TFV ++ AC+H GLV +G+  F+ M E  G+ P ++H+ C+
Sbjct: 281 AAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGCM 340

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL R+G L+EA  LI  MP  PD     AL+ AC+ H NTE+G ++   ++ L+P + 
Sbjct: 341 VDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHNS 400

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
             Y+LL+N+YASA  W+ V+KVRKLM+   VKK PG+S IE   G   F AG  +HP   
Sbjct: 401 GRYVLLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHPQAK 460

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           EI+  L E+   ++  GYVPDT  VLHD++++EKE  L++HSE+LA+A+GLLK+ PG  L
Sbjct: 461 EIYAKLDEILETIRSIGYVPDTDGVLHDIDEEEKENPLYYHSEKLAIAFGLLKTKPGETL 520

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+ KNLR+C DCH   K+IS++  REI++RD  R+HHF+ G CSC D+W
Sbjct: 521 RISKNLRICRDCHQASKLISKVYDREIIIRDRNRFHHFRMGGCSCKDYW 569



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 161/373 (43%), Gaps = 54/373 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +R C         K +HA ++K G    G   N LI  Y     ++ A  + + MPQRD 
Sbjct: 101 IRACCIDYAIEEGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDR 160

Query: 70  --VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
             VSW +++ AY Q+N   +  ++F  M  L+ +  D FV AS++ AC  LGA   GK +
Sbjct: 161 NSVSWNAMIAAYVQSNRLHEAFALFDRM-RLENVVLDKFVAASMLSACTGLGALEQGKWI 219

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           H     S    D  + ++++DMY KCG    A  VF+ +  K   SW  M+   A  G+ 
Sbjct: 220 HGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKGISSWNCMIGGLAMHGKG 279

Query: 188 KDAMEIFEQ------APVRNLF---LWTALVSGLVQSRNEIDAFYSFIEMRREG------ 232
           + A+E+F++      AP    F   L     SGLV+       + + +   + G      
Sbjct: 280 EAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQYMTEVLGLKPGMEHFGC 339

Query: 233 -VDIV--------------------DPLVLSSIVGACANFAVLELGKQIHGLVIAL-GYE 270
            VD++                    D  VL ++VGAC      ELG+QI   VI L  + 
Sbjct: 340 MVDLLGRAGLLEEARKLINEMPVNPDAGVLGALVGACRIHGNTELGEQIGKKVIELEPHN 399

Query: 271 SCLFISNAIVDMYA---KCSDIIAAKDIFGRMRRKDVVSWTSI---------IVGTAQHG 318
           S  ++   + ++YA   +  D+   + +      K    ++ I         I G   H 
Sbjct: 400 SGRYV--LLANLYASAGRWEDVAKVRKLMNDRGVKKAPGFSMIESESGVDEFIAGGRAHP 457

Query: 319 QAEETLALYDEMV 331
           QA+E  A  DE++
Sbjct: 458 QAKEIYAKLDEIL 470


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/578 (36%), Positives = 334/578 (57%), Gaps = 40/578 (6%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L  TL+  Y + + +  A    + +   D VSW ++  AY Q +  ++ + +F  ML L+
Sbjct: 391 LGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERML-LE 449

Query: 100 KLQPDHFVFASLVKACGSL---GATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP 156
            ++P    F + + AC +     A+ +GK++ +    +    D  V ++ ++MYAKCG  
Sbjct: 450 GVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSL 509

Query: 157 NNARAVFDSIK--LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
            +ARAVF+ I    ++ ++W +ML+AY   G  K+A E+F+                   
Sbjct: 510 ADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQA------------------ 551

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF 274
                        M  E +   + +   +++ A  +   +  G++IH  V++ G+ES   
Sbjct: 552 -------------MEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSNGFESDTV 598

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRM--RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           I NA+++MYAKC  +  A+ IF +    ++DV++WTS+I G AQ+GQAE  L L+  M  
Sbjct: 599 IQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLIAGYAQYGQAERALKLFWTMQQ 658

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
            GV+PN VTF+  + AC+H G + +G +L   M  D+GI P+ +H++C++DLL R G LD
Sbjct: 659 QGVRPNHVTFISALTACNHGGKLEQGCELLSGMTPDHGILPASKHFSCIVDLLGRCGRLD 718

Query: 393 EAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           EAE L++    + D  TW ALL ACK+ +  E G R A  ++ L PE  SSYI+L+++YA
Sbjct: 719 EAEKLLERTS-QADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLASMYA 777

Query: 453 SAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDA 512
           +A  W   + +RK M    ++ +PG S +E  +  H F AG+ SHP  +EI+  L  L  
Sbjct: 778 AAGRWNEAATIRKTMLDKGIRADPGCSAVEVNQELHSFSAGDKSHPKSEEIYLELERLHW 837

Query: 513 EMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGD 572
            +K  GYV DT  VLHD+ Q+ KER L  HSE+LA+A+GL+ +  G+ LRV+KNLRVC D
Sbjct: 838 SIKAAGYVADTGLVLHDVSQEHKERLLMRHSEKLAIAFGLMSTPSGSPLRVIKNLRVCSD 897

Query: 573 CHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           CH   K+IS++T R+I++RD++RYHHF  G CSC D+W
Sbjct: 898 CHTATKLISKVTGRDILMRDSSRYHHFTSGTCSCGDYW 935



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 197/435 (45%), Gaps = 54/435 (12%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQII--KLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
           S Y   L+ C R +     + LHA I+  ++ LH +  L + LI  + KC  +  A  L 
Sbjct: 44  STYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALA 103

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
           +        S  +++ A+ +   P K + +F  M    +++P+     +LV AC  LG  
Sbjct: 104 DRFASV--YSCTAMIRAWMEHGRPDKAMELFDRM----EVRPNCHALIALVNACSCLGNL 157

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
             G+++H     S   D D                      F+    +NSV   A++S Y
Sbjct: 158 AAGRRIH-----SQISDRD----------------------FE----ENSVLGNALISMY 186

Query: 182 ARSGRKKDAMEIFEQAP---VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238
           ++ G   DA + F++ P    R++  W A++S  +++ +  +A   F +M R+G    + 
Sbjct: 187 SKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNS 246

Query: 239 LVLSSIVGACANFAVLELG--KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           +   S++ +C    +L L   + IHG ++  G E   F+  A+VD Y K   +  A ++F
Sbjct: 247 VTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVF 306

Query: 297 GRMRRKDVVSWTSIIVGTA------QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350
             +R+ D    TS++  +A      Q+G  +E+L L+  M   G KP+ VT V ++ ACS
Sbjct: 307 --LRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACS 364

Query: 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTW 410
            + +      + +  +E    T      T LL   +RS  L  A     A+   PD  +W
Sbjct: 365 MLQVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLPRARATFDAIQ-SPDVVSW 423

Query: 411 AALLSA-CKHHRNTE 424
            A+ +A  +HHR+ E
Sbjct: 424 NAMAAAYLQHHRSRE 438



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 193/421 (45%), Gaps = 48/421 (11%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL----EEMPQRDHVSWASILT 77
           V+ +H +I+  G+ +   +   L+D+YGK   +  A  +     +E P    V+ +++++
Sbjct: 267 VRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMIS 326

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
           A  Q   PQ+++ +F  M  L+  +P      S++ AC  L   ++G      FVL    
Sbjct: 327 ACWQNGWPQESLRLFFAM-NLEGTKPSGVTLVSVLNACSML---QVGSAT--AFVLEQAM 380

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
           +  VV ++                       +++V  T +L+ YARS     A   F+  
Sbjct: 381 E--VVSAT-----------------------RDNVLGTTLLTTYARSNDLPRARATFDAI 415

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG--ACANF---A 252
              ++  W A+ +  +Q     +A   F  M  EG   V P V + I    ACA +    
Sbjct: 416 QSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEG---VRPSVATFITALTACAAYPPQT 472

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR--RKDVVSWTSI 310
              +GK+I  L+   G E    ++NA ++MYAKC  +  A+ +F R+   R+D ++W S+
Sbjct: 473 ASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARAVFERISPARRDCITWNSM 532

Query: 311 IVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +     HG  +E   L+  M +   VKPN+VTFV ++ A +    + +GR++   ++ + 
Sbjct: 533 LAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVSN- 591

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLI-KAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           G          LL++ ++ G LD+A+ +  K+   + D   W +L++    +   E   +
Sbjct: 592 GFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLIAGYAQYGQAERALK 651

Query: 429 V 429
           +
Sbjct: 652 L 652



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 172/377 (45%), Gaps = 50/377 (13%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCD---DDVVKSSLVDMYAKCGLPNNARAVF 163
            +  L++ACG L A + G+++HA  +LS   D      + S L+ M+AKCG    A A+ 
Sbjct: 45  TYGCLLQACGRLRALKQGQRLHA-HILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALA 103

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           D  +  +  S TAM+ A+   GR   AME+F++  VR                       
Sbjct: 104 D--RFASVYSCTAMIRAWMEHGRPDKAMELFDRMEVRP---------------------- 139

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
                        +   L ++V AC+    L  G++IH  +    +E    + NA++ MY
Sbjct: 140 -------------NCHALIALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMY 186

Query: 284 AKCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV-KPNE 339
           +KC  +I AK  F R+ R   +DVV+W ++I    ++G A E L L+ +M   G   PN 
Sbjct: 187 SKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNS 246

Query: 340 VTFVGLIYACSHVGLVG-KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA-ENL 397
           VTFV ++ +C   GL+  +  +     I   GI       T L+D   + G LD+A E  
Sbjct: 247 VTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSLDDAWEVF 306

Query: 398 IKAMPFEPDEP--TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
           ++    EP     T +A++SAC  +   +   R+    ++L+   PS   L+S + A + 
Sbjct: 307 LRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLF-FAMNLEGTKPSGVTLVSVLNACSM 365

Query: 456 MWQHVSKVRKLMSVMEV 472
           +    +    L   MEV
Sbjct: 366 LQVGSATAFVLEQAMEV 382



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 161/323 (49%), Gaps = 52/323 (16%)

Query: 3   ISHYLHRLRVCARH--QIALTV-KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHH 59
           ++ ++  L  CA +  Q A  + K + + + + GL     + N  ++ Y KC  +  A  
Sbjct: 455 VATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAVANATLNMYAKCGSLADARA 514

Query: 60  LLEEM--PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGS 117
           + E +   +RD ++W S+L AY    L ++   +F  M A   ++P+   F +++ A  S
Sbjct: 515 VFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTS 574

Query: 118 LGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFD--SIKLKNSVSWT 175
             +   G+++HA  V + F  D V++++L++MYAKCG  ++A+A+FD  S   ++ ++WT
Sbjct: 575 RTSIAQGREIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWT 634

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
           ++++ YA+ G+ + A+++F          WT                     M+++GV  
Sbjct: 635 SLIAGYAQYGQAERALKLF----------WT---------------------MQQQGVR- 662

Query: 236 VDPLVLSSIVGACANFAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYAKCSD 288
            + +   S + AC +   LE G ++       HG++ A  + SC      IVD+  +C  
Sbjct: 663 PNHVTFISALTACNHGGKLEQGCELLSGMTPDHGILPASKHFSC------IVDLLGRCGR 716

Query: 289 IIAAKDIFGRMRRKDVVSWTSII 311
           +  A+ +  R  + DV++W +++
Sbjct: 717 LDEAEKLLERTSQADVITWMALL 739



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 93/183 (50%), Gaps = 10/183 (5%)

Query: 238 PLVLSSIVGACANFAVLELGKQIHGLVIA--LGYESCLFISNAIVDMYAKCSDIIAAKDI 295
           P     ++ AC     L+ G+++H  +++  +   +  F+++ ++ M+AKC ++  A+ +
Sbjct: 43  PSTYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEAL 102

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
             R     V S T++I    +HG+ ++ + L+D M    V+PN    + L+ ACS +G +
Sbjct: 103 ADRF--ASVYSCTAMIRAWMEHGRPDKAMELFDRM---EVRPNCHALIALVNACSCLGNL 157

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP--FEPDEPTWAAL 413
             GR++  S I D     +      L+ + S+ G L +A+     +P   + D  TW A+
Sbjct: 158 AAGRRI-HSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAM 216

Query: 414 LSA 416
           +SA
Sbjct: 217 ISA 219



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 77/170 (45%), Gaps = 14/170 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTAYN 80
           + +HA+++  G      + N L++ Y KC  +  A  + ++    Q D ++W S++  Y 
Sbjct: 582 REIHARVVSNGFESDTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLIAGYA 641

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           Q    ++ + +F TM     ++P+H  F S + AC        GK    C +LS    D 
Sbjct: 642 QYGQAERALKLFWTMQQ-QGVRPNHVTFISALTAC-----NHGGKLEQGCELLSGMTPDH 695

Query: 141 VVK------SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
            +       S +VD+  +CG  + A  + +     + ++W A+L A   S
Sbjct: 696 GILPASKHFSCIVDLLGRCGRLDEAEKLLERTSQADVITWMALLDACKNS 745


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/626 (35%), Positives = 346/626 (55%), Gaps = 61/626 (9%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA-----------NLPQKTIS 90
           N L+  Y    ++  A  + + MP+R+ VSW +++  Y +             +P+K + 
Sbjct: 164 NGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVV 223

Query: 91  IFSTMLA-------------LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
            ++ ML              L  + P+  V  +     G  G  ++G+ V A  +     
Sbjct: 224 SWTVMLGGLLQEGRIDEACRLFDMMPEKDV-VTRTNMIG--GYCQVGRLVEARMLFDEMP 280

Query: 138 DDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             +VV  ++++  Y +    + AR +F+ +  KN VSWTAML  Y   GR  +A E+F  
Sbjct: 281 RRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNA 340

Query: 197 APVRNLF-------------------------------LWTALVSGLVQSRNEIDAFYSF 225
            P++++                                 W+A++    +   E+DA   F
Sbjct: 341 MPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELF 400

Query: 226 IEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK 285
             M+REG+    P ++S ++  CA  A L+ G++IH  ++   ++  +++++ ++ MY K
Sbjct: 401 RMMQREGIRPNFPSLIS-VLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIK 459

Query: 286 CSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGL 345
           C ++  AK +F R   KDVV W SII G AQHG   E L ++ +M  +G+ P++VTFVG+
Sbjct: 460 CGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGV 519

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP 405
           + ACS+ G V KG ++F SM   Y +   ++HY C++DLL R+G L+EA +LI+ MP E 
Sbjct: 520 LSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEA 579

Query: 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRK 465
           D   W ALL AC+ H   ++    A  LL L+P++   +ILLSN+YAS   W  V+++R+
Sbjct: 580 DAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRR 639

Query: 466 LMSVMEVKKEPGYSYIEFGKGSHIFYAGETS-HPLKDEIFELLTELDAEMKRRGYVPDTS 524
            M    V K PG S+I   K  H F  G++S HP   EI  +L  L   ++  GY PD S
Sbjct: 640 NMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQS 699

Query: 525 SVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRIT 584
            VLHD++++EK + L +HSE+LAVAYGLLK   G  +RV+KNLRVCGDCH  +K+I+++T
Sbjct: 700 FVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVT 759

Query: 585 KREIVVRDATRYHHFKDGKCSCNDFW 610
            REI++RDA R+HHFKDG CSC D+W
Sbjct: 760 GREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 98/457 (21%), Positives = 197/457 (43%), Gaps = 41/457 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+LI  Y +   ++ A  + +EM  ++ +SW SI+  Y Q   PQ+  ++F  M   + +
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTI 161

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNAR 160
             +  V           G    G    A  V     + +VV  +++V  Y K G+ + A 
Sbjct: 162 SWNGLVS----------GYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAE 211

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            +F  +  KN VSWT ML    + GR  +A  +F+  P +++   T ++ G  Q    ++
Sbjct: 212 TLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVE 271

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACAN-----FAVLELGKQIHGLVIALGYESC--- 272
           A   F EM R  V     ++   +     +     F V+    ++    +  GY +C   
Sbjct: 272 ARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRL 331

Query: 273 -----LFIS---------NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
                LF +         NA++  + +  ++  A+ +F +MR KD  +W+++I    + G
Sbjct: 332 DEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKG 391

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
              + L L+  M   G++PN  + + ++  C+ +  +  GR++   ++        +   
Sbjct: 392 LELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQ-FDLDVYVA 450

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN--HLLSL 436
           + LL +  + G+L +A+ +      + D   W ++++    H       RV +  H   +
Sbjct: 451 SVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIITGYAQHGLGVEALRVFHDMHFSGI 509

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473
            P+D    +    V ++ +   +V K  ++ + ME K
Sbjct: 510 MPDD----VTFVGVLSACSYTGNVKKGLEIFNSMETK 542



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 126/282 (44%), Gaps = 51/282 (18%)

Query: 136 FCDDDVV-KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
           +C + ++ ++SL+  Y++ G    AR VFD ++ KN +SW ++++ Y ++ R ++A  +F
Sbjct: 93  YCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMF 152

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
           ++   RN   W  LVSG + +            M  E  ++ D +   ++V         
Sbjct: 153 DKMSERNTISWNGLVSGYINN-----------GMINEAREVFDRMPERNVVSW------- 194

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
                                  A+V  Y K   I  A+ +F +M  K+VVSWT ++ G 
Sbjct: 195 ----------------------TAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGL 232

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
            Q G+ +E   L+D M    V    VT   +I     VG + + R LF  M     ++  
Sbjct: 233 LQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVS-- 286

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
              +T ++    ++  +D A  L + MP E +E +W A+L  
Sbjct: 287 ---WTTMITGYVQNQQVDIARKLFEVMP-EKNEVSWTAMLKG 324


>gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana]
          Length = 603

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/559 (38%), Positives = 320/559 (57%), Gaps = 36/559 (6%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           + YA HL E M + D V + S+   Y++   P +  S+F  +L  D + PD++ F SL+K
Sbjct: 79  MSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILE-DGILPDNYTFPSLLK 137

Query: 114 ACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSV 172
           AC    A   G+Q+H C  +    DD+V V  +L++MY +C   ++AR VFD I     V
Sbjct: 138 ACAVAKALEEGRQLH-CLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVV 196

Query: 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
            + AM++ YAR  R  +A+ +F +            + G     NEI             
Sbjct: 197 CYNAMITGYARRNRPNEALSLFRE------------MQGKYLKPNEI------------- 231

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
                   L S++ +CA    L+LGK IH       +   + ++ A++DM+AKC  +  A
Sbjct: 232 -------TLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDA 284

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
             IF +MR KD  +W+++IV  A HG+AE+++ +++ M S  V+P+E+TF+GL+ ACSH 
Sbjct: 285 VSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHT 344

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           G V +GRK F  M+  +GI PS++HY  ++DLLS +G+L++A   I  +P  P    W  
Sbjct: 345 GRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNLEDAYEFIDKLPISPTPMLWRI 404

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
           LL+AC  H N ++  +V+  +  L       Y++LSN+YA    W++V  +RK+M   + 
Sbjct: 405 LLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKA 464

Query: 473 KKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH-DME 531
            K PG S IE     H F++G+       ++   L E+  E+K  GYVPDTS V+H +M 
Sbjct: 465 VKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMN 524

Query: 532 QKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVR 591
            +EKE  L +HSE+LA+ +GLL + PGT +RVVKNLRVC DCH   K+IS I  R++V R
Sbjct: 525 DQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVXR 584

Query: 592 DATRYHHFKDGKCSCNDFW 610
           D  R+HHF+DGKCSC DFW
Sbjct: 585 DVQRFHHFEDGKCSCGDFW 603



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 107/193 (55%), Gaps = 1/193 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA  +     + LH   +KLGL     +  TLI+ Y +C+ V  A  + + + +   
Sbjct: 136 LKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCV 195

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V + +++T Y + N P + +S+F  M     L+P+     S++ +C  LG+  LGK +H 
Sbjct: 196 VCYNAMITGYARRNRPNEALSLFREMQG-KYLKPNEITLLSVLSSCALLGSLDLGKWIHK 254

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                 FC    V ++L+DM+AKCG  ++A ++F+ ++ K++ +W+AM+ AYA  G+ + 
Sbjct: 255 YAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEK 314

Query: 190 AMEIFEQAPVRNL 202
           +M +FE+    N+
Sbjct: 315 SMLMFERMRSENV 327



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 36/164 (21%), Positives = 70/164 (42%), Gaps = 33/164 (20%)

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
           S +  A+ +F  M   D+V + S+  G ++     E  +L+ E++  G+ P+  TF  L+
Sbjct: 77  SSMSYARHLFEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLL 136

Query: 347 YACSHVGLVGKGRKLF---------------KSMIEDYG---------------ITPSLQ 376
            AC+    + +GR+L                 ++I  Y                + P + 
Sbjct: 137 KACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVV 196

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMP---FEPDEPTWAALLSAC 417
            Y  ++   +R    +EA +L + M     +P+E T  ++LS+C
Sbjct: 197 CYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSC 240


>gi|449490721|ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Cucumis sativus]
          Length = 609

 Score =  407 bits (1045), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/603 (34%), Positives = 340/603 (56%), Gaps = 36/603 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNT-LIDAYGKCDL-VQYAHHLLEEMPQR 67
           +++C   Q  L  K +HA  I+ G+    P  N  LI A       + +A  +  ++   
Sbjct: 41  VQLCGSSQSKL--KQIHAFSIRHGVPPQNPDFNKHLIFALVSLSAPMSFAAQIFNQIQAP 98

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           +  +W +++  + ++  P   + +FS M A   + PD   F  L KA   L    LG+ +
Sbjct: 99  NIFTWNTMIRGFAESENPSPAVELFSQMHAASSILPDTHTFPFLFKAVAKLMDVSLGEGI 158

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           H+  V + F     V++SLV MY+  G   +A  VF+ +  ++ V+W ++++ +A +G  
Sbjct: 159 HSVVVRNGFDSLRFVQNSLVHMYSVLGSLXSAYQVFEIMSYRDRVAWNSVINGFALNGMP 218

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
            +A+ ++                                EM  EGV+  D   + S++ A
Sbjct: 219 NEALTLYR-------------------------------EMGSEGVE-PDGFTMVSLLSA 246

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
           C     L LG+++H  ++ +G       SNA++D+Y+KC +   A+ +F  M  + VVSW
Sbjct: 247 CVELGALALGERVHMYMVKVGLVQNQHASNALLDLYSKCGNFRDAQKVFDEMEERSVVSW 306

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           TS+IVG A +G   E L L+ E+   G+KP+E+TFVG++YACSH G++ +G   F+ M E
Sbjct: 307 TSLIVGLAVNGLGNEALKLFGELERQGLKPSEITFVGVLYACSHCGMLDEGFNYFRRMKE 366

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
           +YGI P ++H+ C++DLL R+G + +A + I+ MP  P+   W  LL AC  H + E+G 
Sbjct: 367 EYGILPRIEHHGCMVDLLCRAGKVGDAYDYIRNMPVPPNAVIWRTLLGACTIHGHLELGE 426

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
                +  L+      ++LLSN+YAS   W  V  VRK+M +  VKK PGYS +E     
Sbjct: 427 VARAEIQRLEQRHSGDFVLLSNLYASERRWLDVQNVRKIMLMKGVKKTPGYSLVELKNRV 486

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
           + F  G+ SHP  +E + +L ++   +K  GYVP T +VL D+E++EKE  L  H+E++A
Sbjct: 487 YEFIMGDRSHPQSEETYAMLAKITQLLKIEGYVPRTVNVLADIEEEEKETALSHHTEKVA 546

Query: 548 VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
           +A+ L+ + PGT +R++KNLRVC DCH+ +K+IS++ +REI+VRD +R+HHFKDG CSC 
Sbjct: 547 IAFMLVNTPPGTPIRIMKNLRVCADCHLAIKLISKVFEREIIVRDRSRFHHFKDGSCSCK 606

Query: 608 DFW 610
           D+W
Sbjct: 607 DYW 609


>gi|224117814|ref|XP_002331638.1| predicted protein [Populus trichocarpa]
 gi|222874034|gb|EEF11165.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 196/472 (41%), Positives = 303/472 (64%), Gaps = 9/472 (1%)

Query: 142 VKSSLVDMYAKC--GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
           V ++++  Y+KC  G  N A  +FD +  K++V+   M++AY  S     A ++FE  P 
Sbjct: 15  VANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFES-----AYKVFELMPE 69

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
           +++  W ++++G   +    +A   +  M  EGV+  D   + S++ ACA  A L LG++
Sbjct: 70  KDIVAWNSVINGFALNGKPNEALTLYKRMGSEGVE-PDGFTMVSLLSACAELATLVLGRR 128

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHG 318
            H  ++ +G    L  +NA++D+YAKC  I  A+ IF  M   ++VVSWTS+IVG A +G
Sbjct: 129 AHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTSLIVGLAVNG 188

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
             +E L  + +M   G+ P+E+TFVG++YACSH G+V +G + FK M E Y I P ++HY
Sbjct: 189 FGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQYDIVPRIEHY 248

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
            C++DLL R+G L EA + I+ MP +P+   W  LL AC  H +  +G      LL L+P
Sbjct: 249 GCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTIHGHLGLGAFARARLLQLEP 308

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
           +D   Y+LLSN+YAS   W  V +VR+ M    V+K PGYS +E G   H F  G+ +HP
Sbjct: 309 KDSGDYVLLSNLYASEQRWSDVHEVRRTMLSEGVRKTPGYSLVELGNHVHEFVMGDRTHP 368

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
             + I+++L E+  ++K  GYVP T++VL D+E++EKE  LF+HSE++A+A+ L+ ++PG
Sbjct: 369 QSEAIYKMLVEMAMKLKLAGYVPHTANVLADIEEEEKESALFYHSEKIAIAFMLINTLPG 428

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           T +R++KNLRVC DCH  +K+IS++ +R+IVVRD +R+HHF+DG CSC D+W
Sbjct: 429 TPIRIIKNLRVCADCHFAIKLISKVFERDIVVRDCSRFHHFRDGSCSCRDYW 480



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 114/243 (46%), Gaps = 33/243 (13%)

Query: 26  HAQIIKLGLHQYGPLPNTLIDAYGKC---DL-------------------------VQYA 57
           H Q +K G+  +G + N ++  Y KC   DL                          + A
Sbjct: 1   HCQAVKPGIFSHGYVANNILSRYSKCVVGDLNLACKLFDEMPHKDTVTLDTMITAYFESA 60

Query: 58  HHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGS 117
           + + E MP++D V+W S++  +     P + ++++  M   + ++PD F   SL+ AC  
Sbjct: 61  YKVFELMPEKDIVAWNSVINGFALNGKPNEALTLYKRM-GSEGVEPDGFTMVSLLSACAE 119

Query: 118 LGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTA 176
           L    LG++ H   V      +    ++L+D+YAKCG  + AR +FD + + +N VSWT+
Sbjct: 120 LATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERNVVSWTS 179

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE---IDAFYSFIEMRREGV 233
           ++   A +G  K+A+E F+      L        G++ + +    ++  + + +  +E  
Sbjct: 180 LIVGLAVNGFGKEALEHFKDMEREGLVPSEITFVGVLYACSHCGIVNEGFEYFKRMKEQY 239

Query: 234 DIV 236
           DIV
Sbjct: 240 DIV 242



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 108/267 (40%), Gaps = 27/267 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP-QRD 68
           L  CA     +  +  H  ++K+GL++     N L+D Y KC  +  A  + +EM  +R+
Sbjct: 114 LSACAELATLVLGRRAHVYMVKVGLNKNLHANNALLDLYAKCGTISEARKIFDEMGIERN 173

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG---- 124
            VSW S++         ++ +  F  M   + L P    F  ++ AC   G    G    
Sbjct: 174 VVSWTSLIVGLAVNGFGKEALEHFKDM-EREGLVPSEITFVGVLYACSHCGIVNEGFEYF 232

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYAR 183
           K++   + + P  +       +VD+  + GL   A      + L+ N+V W  +L A   
Sbjct: 233 KRMKEQYDIVPRIEH---YGCMVDLLGRAGLLKEAYDYIQDMPLQPNAVIWRTLLGACTI 289

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTA----LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
            G     +  F +A +  L    +    L+S L  S           E R   V  V   
Sbjct: 290 HGHL--GLGAFARARLLQLEPKDSGDYVLLSNLYAS-----------EQRWSDVHEVRRT 336

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIA 266
           +LS  V     ++++ELG  +H  V+ 
Sbjct: 337 MLSEGVRKTPGYSLVELGNHVHEFVMG 363


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 210/605 (34%), Positives = 335/605 (55%), Gaps = 34/605 (5%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPL-PNTLIDAYGKCDLVQYAHHLLEEMP 65
           L+ L VC      L +K +H   ++ G  Q   L  N  +  Y KC  + YA  +   M 
Sbjct: 404 LNVLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGME 463

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            +   SW +++  + Q   P+K + ++  M     L+PD F  ASL+ AC  L +   GK
Sbjct: 464 SKMVSSWNALIGGHVQNGFPRKALDLYLLMRG-SGLEPDLFTIASLLSACARLKSLSCGK 522

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++H   + + F  D+ +  SLV +Y +CG    A+  FD+++ K                
Sbjct: 523 EIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEK---------------- 566

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
                          NL  W  +++G  Q+    DA   F +M    +   D + +   +
Sbjct: 567 ---------------NLVCWNTMINGFSQNEFPFDALDMFHQMLSSKI-WPDEISIIGAL 610

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
           GAC+  + L LGK++H   +        F++ +++DMYAKC  +  +++IF R+  K  V
Sbjct: 611 GACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGEV 670

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +W  +I G   HG   + + L+  M +AG +P+ VTF+ L+ AC+H GLV +G +    M
Sbjct: 671 TWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLEYLGQM 730

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
              +GI P L+HY C++D+L R+G L+EA  L+  +P +PD   W++LLS+C+++R+ ++
Sbjct: 731 QSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNYRDLDI 790

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G +VAN LL L P+   +Y+L+SN YA    W  V K+R+ M  + ++K+ G S+IE G 
Sbjct: 791 GEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSWIEIGG 850

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
               F  G+ S     +I +   EL+ ++ + GY PDTS VLH++E+ EK + L  HSE+
Sbjct: 851 KVSRFLVGDESLLQSMKIQQTWIELEKKINKIGYKPDTSCVLHELEEDEKIKILRNHSEK 910

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+++GLL +  GT LRV KNLR+C DCH  +K++S+I KREI+VRD  R+HHFK+G CS
Sbjct: 911 LAISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKIDKREIIVRDNKRFHHFKNGFCS 970

Query: 606 CNDFW 610
           C D+W
Sbjct: 971 CGDYW 975



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 166/357 (46%), Gaps = 44/357 (12%)

Query: 14  ARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWA 73
           A H  AL  K L    +           N LI  YGK   V+ A  + ++MPQR+ VSW 
Sbjct: 217 AVHGFALKTKVLSDVFVG----------NALIAMYGKFGFVESAVKVFDKMPQRNLVSWN 266

Query: 74  SILTAYNQANLPQKTISIFSTMLALDK-LQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
           S++ A  +  + +++  +F  +L  D+ L PD     +++  C   G  RLG   H   +
Sbjct: 267 SVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLAL 326

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
               C +  V SSL+DMY+KCG    AR +FD+ + KN +SW +M+  Y++    + A E
Sbjct: 327 KLGLCGELKVNSSLLDMYSKCGYLCEARVLFDTNE-KNVISWNSMIGGYSKDRDFRGAFE 385

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +  +                               M+ E    V+ + L +++  C    
Sbjct: 386 LLRK-------------------------------MQMEDKVKVNEVTLLNVLPVCEEEI 414

Query: 253 VLELGKQIHGLVIALGY-ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
                K+IHG  +  G+ +S   ++NA V  YAKC  +  A+ +F  M  K V SW ++I
Sbjct: 415 QFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALI 474

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
            G  Q+G   + L LY  M  +G++P+  T   L+ AC+ +  +  G+++  SM+ +
Sbjct: 475 GGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRN 531



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 203/444 (45%), Gaps = 71/444 (15%)

Query: 12  VCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVS 71
           +CAR          H   +KLGL     + ++L+D Y KC  +  A  +L +  +++ +S
Sbjct: 308 LCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEAR-VLFDTNEKNVIS 366

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
           W S++  Y++    +    +   M   DK++ +     +++  C         K++H   
Sbjct: 367 WNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYA 426

Query: 132 VLSPFCD-DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
           +   F   D++V ++ V  YAKCG  + A  VF  ++ K       M+S+          
Sbjct: 427 LRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESK-------MVSS---------- 469

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
                         W AL+ G VQ+     A   ++ MR  G++  D   ++S++ ACA 
Sbjct: 470 --------------WNALIGGHVQNGFPRKALDLYLLMRGSGLE-PDLFTIASLLSACAR 514

Query: 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
              L  GK+IHG ++  G+E   FI  ++V +Y +C  I+ AK  F  M  K++V W ++
Sbjct: 515 LKSLSCGKEIHGSMLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTM 574

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370
           I G +Q+    + L ++ +M+S+ + P+E++ +G + ACS V  +  G++L    ++ + 
Sbjct: 575 INGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQVSALRLGKELHCFAVKSHL 634

Query: 371 ITPSLQHYTC-LLDLLSRSGHLDEAEN-------------------------------LI 398
              S    TC L+D+ ++ G +++++N                               L 
Sbjct: 635 TEHSF--VTCSLIDMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELF 692

Query: 399 KAMP---FEPDEPTWAALLSACKH 419
           K+M    F PD  T+ ALL+AC H
Sbjct: 693 KSMQNAGFRPDSVTFIALLTACNH 716



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 150/315 (47%), Gaps = 37/315 (11%)

Query: 111 LVKACGSLGATRLGKQVHACFVLSP-FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           L++ CG      +G+++H     SP F +D V+ + LV MY+ C  P ++  VF++ + K
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
                                          NLFLW AL+SG +++    DA + F+EM 
Sbjct: 159 -------------------------------NLFLWNALLSGYLRNSLFRDAVFVFVEMI 187

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289
                + D   L  ++ AC     + LG+ +HG  +     S +F+ NA++ MY K   +
Sbjct: 188 SLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFV 247

Query: 290 IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA--GVKPNEVTFVGLIY 347
            +A  +F +M ++++VSW S++    ++G  EE+  L+  +++   G+ P+  T V +I 
Sbjct: 248 ESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIP 307

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
            C+  G V  G  +F  +    G+   L+  + LLD+ S+ G+L EA  L      E + 
Sbjct: 308 LCARQGEVRLGM-VFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDTN--EKNV 364

Query: 408 PTWAALLSACKHHRN 422
            +W +++      R+
Sbjct: 365 ISWNSMIGGYSKDRD 379



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 103/431 (23%), Positives = 187/431 (43%), Gaps = 68/431 (15%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   L+  Y  CD    +  +     +++   W ++L+ Y + +L +  + +F  M++L 
Sbjct: 131 LITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLT 190

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           +  PD+F    ++KAC  +   RLG+ VH   + +    D  V ++L+ MY K G   +A
Sbjct: 191 EFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESA 250

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
             VFD +  +N VSW +++ A   +G       +FE++          L  GL+      
Sbjct: 251 VKVFDKMPQRNLVSWNSVMYACLENG-------VFEES--------YGLFKGLLNG---- 291

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
                      EG+ + D   + +++  CA    + LG   HGL + LG    L +++++
Sbjct: 292 ----------DEGL-MPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSL 340

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEM-VSAGVKPN 338
           +DMY+KC  +  A+ +F     K+V+SW S+I G ++         L  +M +   VK N
Sbjct: 341 LDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVN 399

Query: 339 EVTFVGLI-----------------YACSHVGLVGKGRKLFKSMIEDYGITPSLQH---- 377
           EVT + ++                 YA  H G +     +  + +  Y    SL +    
Sbjct: 400 EVTLLNVLPVCEEEIQFLKLKEIHGYALRH-GFIQSDELVANAFVAGYAKCGSLHYAEGV 458

Query: 378 -----------YTCLLDLLSRSGHLDEAEN---LIKAMPFEPDEPTWAALLSACKHHRNT 423
                      +  L+    ++G   +A +   L++    EPD  T A+LLSAC   ++ 
Sbjct: 459 FCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKSL 518

Query: 424 EMGTRVANHLL 434
             G  +   +L
Sbjct: 519 SCGKEIHGSML 529


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/626 (35%), Positives = 346/626 (55%), Gaps = 61/626 (9%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA-----------NLPQKTIS 90
           N L+  Y    ++  A  + + MP+R+ VSW +++  Y +             +P+K + 
Sbjct: 164 NGLVSGYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVV 223

Query: 91  IFSTMLA-------------LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
            ++ ML              L  + P+  V  +     G  G  ++G+ V A  +     
Sbjct: 224 SWTVMLGGLLQEGRIDEACRLFDMMPEKDV-VTRTNMIG--GYCQVGRLVEARMLFDEMP 280

Query: 138 DDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             +VV  ++++  Y +    + AR +F+ +  KN VSWTAML  Y   GR  +A E+F  
Sbjct: 281 RRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRLDEASELFNA 340

Query: 197 APVRNLF-------------------------------LWTALVSGLVQSRNEIDAFYSF 225
            P++++                                 W+A++    +   E+DA   F
Sbjct: 341 MPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKGLELDALELF 400

Query: 226 IEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK 285
             M+REG+    P ++S ++  CA  A L+ G++IH  ++   ++  +++++ ++ MY K
Sbjct: 401 RMMQREGIRPNFPSLIS-VLSVCAGLANLDHGREIHAQLVRSQFDLDVYVASVLLSMYIK 459

Query: 286 CSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGL 345
           C ++  AK +F R   KDVV W SII G AQHG   E L ++ +M  +G+ P++VTFVG+
Sbjct: 460 CGNLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGV 519

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP 405
           + ACS+ G V KG ++F SM   Y +   ++HY C++DLL R+G L+EA +LI+ MP E 
Sbjct: 520 LSACSYTGNVKKGLEIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPMEA 579

Query: 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRK 465
           D   W ALL AC+ H   ++    A  LL L+P++   +ILLSN+YAS   W  V+++R+
Sbjct: 580 DAIIWGALLGACRTHMKLDLAEVAAKKLLVLEPKNAGPFILLSNIYASQGRWDDVAELRR 639

Query: 466 LMSVMEVKKEPGYSYIEFGKGSHIFYAGETS-HPLKDEIFELLTELDAEMKRRGYVPDTS 524
            M    V K PG S+I   K  H F  G++S HP   EI  +L  L   ++  GY PD S
Sbjct: 640 NMRDRRVSKYPGCSWIVVEKKVHKFTGGDSSGHPEHSEINRILEWLSGLLREAGYYPDQS 699

Query: 525 SVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRIT 584
            VLHD++++EK + L +HSE+LAVAYGLLK   G  +RV+KNLRVCGDCH  +K+I+++T
Sbjct: 700 FVLHDVDEEEKVQSLEYHSEKLAVAYGLLKIPIGMPIRVMKNLRVCGDCHAAIKLIAKVT 759

Query: 585 KREIVVRDATRYHHFKDGKCSCNDFW 610
            REI++RDA R+HHFKDG CSC D+W
Sbjct: 760 GREIILRDANRFHHFKDGSCSCRDYW 785



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 98/457 (21%), Positives = 197/457 (43%), Gaps = 41/457 (8%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+LI  Y +   ++ A  + +EM  ++ +SW SI+  Y Q   PQ+  ++F  M   + +
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSERNTI 161

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNAR 160
             +  V           G    G    A  V     + +VV  +++V  Y K G+ + A 
Sbjct: 162 SWNGLVS----------GYINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAE 211

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            +F  +  KN VSWT ML    + GR  +A  +F+  P +++   T ++ G  Q    ++
Sbjct: 212 TLFWQMPEKNVVSWTVMLGGLLQEGRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVE 271

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACAN-----FAVLELGKQIHGLVIALGYESC--- 272
           A   F EM R  V     ++   +     +     F V+    ++    +  GY +C   
Sbjct: 272 ARMLFDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGYTNCGRL 331

Query: 273 -----LFIS---------NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
                LF +         NA++  + +  ++  A+ +F +MR KD  +W+++I    + G
Sbjct: 332 DEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERKG 391

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
              + L L+  M   G++PN  + + ++  C+ +  +  GR++   ++        +   
Sbjct: 392 LELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVRSQ-FDLDVYVA 450

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN--HLLSL 436
           + LL +  + G+L +A+ +      + D   W ++++    H       RV +  H   +
Sbjct: 451 SVLLSMYIKCGNLAKAKQVFDRFAVK-DVVMWNSIITGYAQHGLGVEALRVFHDMHFSGI 509

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473
            P+D    +    V ++ +   +V K  ++ + ME K
Sbjct: 510 MPDD----VTFVGVLSACSYTGNVKKGLEIFNSMETK 542



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 126/282 (44%), Gaps = 51/282 (18%)

Query: 136 FCDDDVV-KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
           +C + ++ ++SL+  Y++ G    AR VFD ++ KN +SW ++++ Y ++ R ++A  +F
Sbjct: 93  YCSNFIISRNSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMF 152

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
           ++   RN   W  LVSG + +            M  E  ++ D +   ++V         
Sbjct: 153 DKMSERNTISWNGLVSGYINN-----------GMINEAREVFDRMPERNVVSW------- 194

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
                                  A+V  Y K   I  A+ +F +M  K+VVSWT ++ G 
Sbjct: 195 ----------------------TAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGL 232

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
            Q G+ +E   L+D M    V    VT   +I     VG + + R LF  M     ++  
Sbjct: 233 LQEGRIDEACRLFDMMPEKDV----VTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVS-- 286

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
              +T ++    ++  +D A  L + MP E +E +W A+L  
Sbjct: 287 ---WTTMITGYVQNQQVDIARKLFEVMP-EKNEVSWTAMLKG 324


>gi|20197649|gb|AAM15176.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 472

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/487 (42%), Positives = 302/487 (62%), Gaps = 34/487 (6%)

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           +VHA  V + +     V ++L+D Y K G    A  VF  I  K+ V+W+AML+ YA++G
Sbjct: 18  EVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTG 77

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             + A+++F +           L  G ++                      +    SSI+
Sbjct: 78  ETEAAIKMFGE-----------LTKGGIKP---------------------NEFTFSSIL 105

Query: 246 GAC-ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
             C A  A +  GKQ HG  I    +S L +S+A++ MYAK  +I +A+++F R R KD+
Sbjct: 106 NVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDL 165

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           VSW S+I G AQHGQA + L ++ EM    VK + VTF+G+  AC+H GLV +G K F  
Sbjct: 166 VSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDI 225

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           M+ D  I P+ +H +C++DL SR+G L++A  +I+ MP       W  +L+AC+ H+ TE
Sbjct: 226 MVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTE 285

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +G   A  ++++KPED ++Y+LLSN+YA +  WQ  +KVRKLM+   VKKEPGYS+IE  
Sbjct: 286 LGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVK 345

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
             ++ F AG+ SHPLKD+I+  L +L   +K  GY PDTS VL D++ + KE  L  HSE
Sbjct: 346 NKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDLGYEPDTSYVLQDIDDEHKEAVLAQHSE 405

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF-KDGK 603
           RLA+A+GL+ +  G+ L ++KNLRVCGDCH+V+K+I++I +REIVVRD+ R+HHF  DG 
Sbjct: 406 RLAIAFGLIATPKGSPLLIIKNLRVCGDCHLVIKLIAKIEEREIVVRDSNRFHHFSSDGV 465

Query: 604 CSCNDFW 610
           CSC DFW
Sbjct: 466 CSCGDFW 472



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 94/179 (52%), Gaps = 2/179 (1%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HAQ++K    +   +   L+DAY K   V+ A  +   +  +D V+W+++L  Y Q   
Sbjct: 19  VHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGE 78

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR-LGKQVHACFVLSPFCDDDVVK 143
            +  I +F   L    ++P+ F F+S++  C +  A+   GKQ H   + S       V 
Sbjct: 79  TEAAIKMFGE-LTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVS 137

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           S+L+ MYAK G   +A  VF   + K+ VSW +M+S YA+ G+   A+++F++   R +
Sbjct: 138 SALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKV 196



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 77/177 (43%), Gaps = 10/177 (5%)

Query: 10  LRVCARHQIALTV-KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L VCA    ++   K  H   IK  L     + + L+  Y K   ++ A  + +   ++D
Sbjct: 105 LNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKD 164

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW S+++ Y Q     K + +F  M    K++ D   F  +  AC   G    G++  
Sbjct: 165 LVSWNSMISGYAQHGQAMKALDVFKEM-KKRKVKMDGVTFIGVFAACTHAGLVEEGEKYF 223

Query: 129 ACFV----LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI-KLKNSVSWTAMLSA 180
              V    ++P  + +   S +VD+Y++ G    A  V +++     S  W  +L+A
Sbjct: 224 DIMVRDCKIAPTKEHN---SCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAA 277


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/611 (35%), Positives = 340/611 (55%), Gaps = 38/611 (6%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S+Y   LR C   +     + LHA+++  G      L   L+D Y  C  V  A  + +E
Sbjct: 69  SNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVFDE 128

Query: 64  MPQRDHVS-WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
           MP + +V  W  ++ AY +    +  I ++  MLA   ++PD+F +  ++KAC +L    
Sbjct: 129 MPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKACAALLDLS 188

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
            G++VH   + + +  D  V + L+DMYAKCG  +                         
Sbjct: 189 AGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMD------------------------- 223

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV-- 240
                 +A  +F    +R+  +W ++++   Q+    +A      M  EG+    P +  
Sbjct: 224 ------EAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNMAAEGIA---PTIAT 274

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           L S + A A  + L  G+++HG     G+ S   +  +++DMYAK   ++ A  +F ++ 
Sbjct: 275 LVSAISAAAVASALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLL 334

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGR 359
            ++++SW ++I G   HG A+    L+  M S A V P+ +TFVG++ AC+H G+V + +
Sbjct: 335 HRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEAK 394

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           ++F  M+  Y I P++QHYTCL+D+L  SG   EA ++IK M  +PD   W ALL+ CK 
Sbjct: 395 EVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKI 454

Query: 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
           H+N E+       L+ L+PED  +Y+LLSN+YA +  W+  ++VRKLM+   +KK    S
Sbjct: 455 HKNVELAELALQKLIELEPEDAGNYVLLSNIYAESGKWEEAARVRKLMTNRGLKKIIACS 514

Query: 480 YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQL 539
           +IE     H F  G+ SHP  D+I+E L  L+  + + GYVPDT+ V H++E  EK   +
Sbjct: 515 WIELKGKFHGFLVGDASHPRSDDIYEELERLEGLISQTGYVPDTTPVFHNVEDDEKRNMV 574

Query: 540 FWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
           + HSERLA+A+GL+ + P T L V KNLRVC DCH+V+K+IS+I +REI++RD  RYHHF
Sbjct: 575 WGHSERLAIAFGLISTPPRTKLLVTKNLRVCEDCHVVIKLISQIEQREIIIRDVNRYHHF 634

Query: 600 KDGKCSCNDFW 610
            +G+CSC D W
Sbjct: 635 VNGECSCKDHW 645



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 172/405 (42%), Gaps = 72/405 (17%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           +H  +A+++++C    A R G+Q+HA  ++S    D V+ + LVD+YA CG  + AR VF
Sbjct: 67  NHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLARRVF 126

Query: 164 DSIKLKNSVS-WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
           D +  + +V  W  ++ AYAR G  + A+E++                          A 
Sbjct: 127 DEMPNQGNVFLWNVLIRAYARDGPCEAAIELYR-------------------------AM 161

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
            ++  M+       D      ++ ACA    L  G+++H  V+   + + +F+   ++DM
Sbjct: 162 LAYGSMK------PDNFTYPPVLKACAALLDLSAGREVHDRVMRTNWATDVFVCTGLIDM 215

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           YAKC  +  A  +F     +D   W S+I    Q+G+  E L L   M + G+ P   T 
Sbjct: 216 YAKCGCMDEAWAVFNDTTIRDAAVWNSMIAACGQNGRPAEALTLCRNMAAEGIAPTIATL 275

Query: 343 VGLIYACSHVGLVGKGRKLFK-SMIEDYGITPSLQHYTCLLDLLSRS------------- 388
           V  I A +    + +GR+L        +G    L+  T LLD+ ++S             
Sbjct: 276 VSAISAAAVASALPRGRELHGYGWRRGFGSQDKLK--TSLLDMYAKSGWVMVAHVLFEQL 333

Query: 389 ------------------GHLDEAENLIKAMPFE----PDEPTWAALLSACKHHRNTEMG 426
                             GH D A  L   M  E    PD  T+  +LSAC H    +  
Sbjct: 334 LHRELISWNAMICGFGMHGHADHAFELFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEA 393

Query: 427 TRVANHLLSLKPEDPS--SYILLSNVYASAAMWQHVSKVRKLMSV 469
             V + ++++    P+   Y  L +V   +  ++  S V K M V
Sbjct: 394 KEVFDLMVTVYSIKPTVQHYTCLVDVLGHSGRFKEASDVIKGMLV 438


>gi|15221306|ref|NP_177601.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169836|sp|Q9CA54.1|PP122_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74630
 gi|12324801|gb|AAG52363.1|AC011765_15 hypothetical protein; 86841-88772 [Arabidopsis thaliana]
 gi|332197495|gb|AEE35616.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 643

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 225/645 (34%), Positives = 350/645 (54%), Gaps = 39/645 (6%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLI--DAYGKCDLVQYAH 58
           + I H L  L  C ++  ALT   +H   IK G+         LI   A    D + YA 
Sbjct: 3   IAIHHCLSLLNSC-KNLRALT--QIHGLFIKYGVDTDSYFTGKLILHCAISISDALPYAR 59

Query: 59  HLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSL 118
            LL   P+ D   + +++  Y++++ P  ++++F  M+    + PD F FA ++KA  + 
Sbjct: 60  RLLLCFPEPDAFMFNTLVRGYSESDEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENF 119

Query: 119 GATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL-------------PN-------- 157
            + R G Q+H   +         V ++L+ MY  CG              PN        
Sbjct: 120 RSLRTGFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVI 179

Query: 158 ----------NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTA 207
                      AR +FD + ++N  SW  ML+ Y ++G  + A  IF + P R+   W+ 
Sbjct: 180 TACFRGNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWST 239

Query: 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267
           ++ G+  + +  ++F  F E++R G+   + + L+ ++ AC+     E GK +HG V   
Sbjct: 240 MIVGIAHNGSFNESFLYFRELQRAGMS-PNEVSLTGVLSACSQSGSFEFGKILHGFVEKA 298

Query: 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD-VVSWTSIIVGTAQHGQAEETLAL 326
           GY   + ++NA++DMY++C ++  A+ +F  M+ K  +VSWTS+I G A HGQ EE + L
Sbjct: 299 GYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRL 358

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
           ++EM + GV P+ ++F+ L++ACSH GL+ +G   F  M   Y I P ++HY C++DL  
Sbjct: 359 FNEMTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYG 418

Query: 387 RSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYIL 446
           RSG L +A + I  MP  P    W  LL AC  H N E+  +V   L  L P +    +L
Sbjct: 419 RSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVL 478

Query: 447 LSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFEL 506
           LSN YA+A  W+ V+ +RK M V  +KK   +S +E GK  + F AGE    +  E  E 
Sbjct: 479 LSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEK 538

Query: 507 LTELDAEMK-RRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVK 565
           L E+   +K   GY P+ +S L+D+E++EKE Q+  HSE+LA+A+ L +   G  +R+VK
Sbjct: 539 LKEIILRLKDEAGYTPEVASALYDVEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVK 598

Query: 566 NLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           NLR+C DCH VMK+ S++   EI+VRD  R+H FKDG CSC D+W
Sbjct: 599 NLRICRDCHAVMKLTSKVYGVEILVRDRNRFHSFKDGSCSCRDYW 643


>gi|413947864|gb|AFW80513.1| hypothetical protein ZEAMMB73_142876 [Zea mays]
          Length = 582

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/542 (38%), Positives = 324/542 (59%), Gaps = 6/542 (1%)

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFV---FASLVKACGSLGATRLGKQVHAC 130
           +++ A +++  P   + +++ +L    L   H +     S+  +    GA  L   VH  
Sbjct: 42  ALIRALSRSARPHLALPLYAHLLRAGLLPTPHTLPSLLKSMALSPAVPGAAVLALTVHTH 101

Query: 131 FVLSPFCDDDVVKSSLVDMYAK-CGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
            V        +V ++L+ ++A   G   +   +  +    ++ ++  +++AYAR+GR  D
Sbjct: 102 AVKLGLDRFVLVSNALIRVHAGFLGSLADGLLLLRTAAAVDASTFNTLITAYARAGRLAD 161

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F++ P RN   W+A+V+G VQ+ +  +A   F  M+ E V   D  VL  ++ ACA
Sbjct: 162 ARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAEDVR-PDDTVLVGVLAACA 220

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LE GK +HG + A G +  LF   A+VDMY+KC ++  A D+F RM+ K+V++WT+
Sbjct: 221 QHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNVLAWTT 280

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G A HG+  E + L+ +M S+G++P+++ F+G++ AC+H GLV KGR+LF SM+  Y
Sbjct: 281 MIKGLAMHGRGSEAVMLFAQMESSGIRPDDIAFIGVLCACTHAGLVDKGRELFDSMVRKY 340

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI P ++HY C++DLL+R+G L EA+ +I+ MP EPD   W AL++ C+ H+N E    V
Sbjct: 341 GIKPKIEHYGCMVDLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVEFAEYV 400

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A H + L+P+   +Y+LLSN+YA++       ++R LM    V K PG S +E     H 
Sbjct: 401 AKHWILLEPDKSGAYVLLSNIYAASGRHASAREIRHLMREKGVDKTPGCSTVEVNGVIHQ 460

Query: 490 FYAGETSHPLKDEIFELLTELDAEMK-RRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
           F  G+ SHP   +I     E+D  ++   GY+PD   VL D+E++EKE  L  HSE+LA+
Sbjct: 461 FIVGDLSHPRIKDILSKWYEIDTRIRLEEGYIPDMKEVLLDIEEEEKEGALSRHSEKLAI 520

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+ L+       +R+ KNLRVC DCH V K+IS++  REIVVRD TR+H FK+G CSC D
Sbjct: 521 AFALISISDNMPIRIFKNLRVCHDCHHVTKLISKVYGREIVVRDRTRFHLFKEGTCSCKD 580

Query: 609 FW 610
           +W
Sbjct: 581 YW 582



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 129/282 (45%), Gaps = 35/282 (12%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NTLI AY +   +  A  L +EMP R+ VSW++++  Y QA   ++ + IF+ M A D +
Sbjct: 147 NTLITAYARAGRLADARALFDEMPARNAVSWSAMVNGYVQAGDGREALRIFARMQAED-V 205

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PD  V   ++ AC   GA   GK VH          +    ++LVDMY+KCG    A  
Sbjct: 206 RPDDTVLVGVLAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMD 265

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF+ ++ KN ++WT M+   A  GR  +A+ +F Q                         
Sbjct: 266 VFERMQYKNVLAWTTMIKGLAMHGRGSEAVMLFAQ------------------------- 300

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH-GLVIALGYESCLFISNAIV 280
                 M   G+   D +    ++ AC +  +++ G+++   +V   G +  +     +V
Sbjct: 301 ------MESSGIR-PDDIAFIGVLCACTHAGLVDKGRELFDSMVRKYGIKPKIEHYGCMV 353

Query: 281 DMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAE 321
           D+ A+   +  AK++  +M    D + W +++ G   H   E
Sbjct: 354 DLLARNGFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKNVE 395



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/214 (21%), Positives = 85/214 (39%), Gaps = 42/214 (19%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA+H      K +H  +   G+         L+D Y KC  VQ A  + E M  ++ 
Sbjct: 216 LAACAQHGALEQGKWVHGYLKAHGIKINLFFGTALVDMYSKCGEVQLAMDVFERMQYKNV 275

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           ++W +++          + + +F+ M +   ++PD   F  ++ AC            HA
Sbjct: 276 LAWTTMIKGLAMHGRGSEAVMLFAQMES-SGIRPDDIAFIGVLCAC-----------THA 323

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-----WTAMLSAYARS 184
                                   GL +  R +FDS+  K  +      +  M+   AR+
Sbjct: 324 ------------------------GLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARN 359

Query: 185 GRKKDAMEIFEQAPVR-NLFLWTALVSGLVQSRN 217
           G   +A E+ ++ P+  +  +W AL++G    +N
Sbjct: 360 GFLYEAKEMIQKMPMEPDALIWGALMAGCRFHKN 393


>gi|449442683|ref|XP_004139110.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
 gi|449516005|ref|XP_004165038.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 609

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/597 (36%), Positives = 343/597 (57%), Gaps = 12/597 (2%)

Query: 22  VKTLHAQIIKLGLHQYGPLP-NTLIDAYGKC-DLVQYAHHLLEEMPQRDHVSWASILT-- 77
           +K +HA++I  GL  + P+P N L+         + YAH + +  PQ D   + +I+   
Sbjct: 17  IKQVHARLITTGLILH-PIPTNKLLKQLSSIFAPISYAHMVFDHFPQPDLFLYNTIIKVL 75

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
           A++  +    + + F +++  ++L P+ + FA   K CGS      G+QV    +     
Sbjct: 76  AFSTTS-SADSFTKFRSLIREERLVPNQYSFAFAFKGCGSGVGVLEGEQVRVHAIKLGLE 134

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
           ++  V ++L+ MY       +AR VFD    ++  SW  MLS YAR G+  +A ++F++ 
Sbjct: 135 NNLFVTNALIGMYVNLDFVVDARKVFDWSPNRDMYSWNIMLSGYARLGKMDEARQLFDEM 194

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P +++  WT ++SG +Q    ++A   F  M  +G+   +   L+S + ACAN   L+ G
Sbjct: 195 PEKDVVSWTTMISGCLQVGYFMEALDIFHNMLAKGMS-PNEYTLASSLAACANLVALDQG 253

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG---RMRRKDVVSWTSIIVGT 314
           + +H  +     +    +   ++DMYAKC ++  A  +F    R++RK V  W ++I G 
Sbjct: 254 RWMHVYIKKNNIQMNERLLAGLIDMYAKCGELEFASKLFNSNPRLKRK-VWPWNAMIGGF 312

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
           A HG+++E + ++++M    V PN+VTFV L+ ACSH   V +GR  F+SM   Y + P 
Sbjct: 313 AVHGKSKEAIEVFEQMKIEKVSPNKVTFVALLNACSHGNRVEEGRYYFESMASHYRVKPE 372

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           L+HY CL+DLL R+G L EAE +I +M   PD   W ALLSACK H++ EMG RV   + 
Sbjct: 373 LEHYGCLVDLLGRAGRLKEAEEIISSMHLTPDVAIWGALLSACKIHKDAEMGERVGKIVK 432

Query: 435 SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGE 494
            L P     ++LL+N+Y+    W     +R+ ++    KK PG S IE     H F  G+
Sbjct: 433 ELDPNHLGCHVLLANIYSLTGNWNEARTLREKIAESGKKKTPGCSSIELNGMFHQFLVGD 492

Query: 495 TSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE-KERQLFWHSERLAVAYGLL 553
            SHP   +++  L E+  ++K  GY+P++  VL D++  E +E  L  HSE+LA+A+GL+
Sbjct: 493 RSHPQTKQLYLFLDEMITKLKIAGYIPESGEVLLDIDDNEDRETALLKHSEKLAIAFGLM 552

Query: 554 KSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            + P T +R+VKNLRVC DCH+ +K IS++  REI+VRD  RYHHFKDG CSCND+W
Sbjct: 553 NTTPKTPIRIVKNLRVCSDCHLAIKFISKVYDREIIVRDRIRYHHFKDGTCSCNDYW 609


>gi|302760843|ref|XP_002963844.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
 gi|300169112|gb|EFJ35715.1| hypothetical protein SELMODRAFT_80662 [Selaginella moellendorffii]
          Length = 781

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/570 (36%), Positives = 325/570 (57%), Gaps = 34/570 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+ ++ +G   L+  A  L E+M  RD V+W  ++T Y Q     + + +F   L  D +
Sbjct: 245 NSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGR-LQQDGV 303

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           + +   F  ++    SL +   GK +H     + +  D VV ++L+ +Y +C  P  A  
Sbjct: 304 KANDITFVLMLNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWK 363

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F  +  K+ ++WT M  AYA++G +K+A+++F+                          
Sbjct: 364 IFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQ-------------------------- 397

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
                EM+ EG        L +++  CA+ A L+ G+QIH  +I   +   + +  A+++
Sbjct: 398 -----EMQLEGRRPTSA-TLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALIN 451

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  +  A  +F +M ++D++ W S++   AQHG  +ETL L+++M   GVK + V+
Sbjct: 452 MYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGVKADAVS 511

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI-KA 400
           FV ++ A SH G V  G + F +M++D+ ITP+ + Y C++DLL R+G + EA +++ K 
Sbjct: 512 FVSVLSALSHSGSVTDGYQYFVAMLQDFSITPTPELYGCVVDLLGRAGRIQEAVDIVLKL 571

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
               PD   W  LL AC+ H  T+     A  +L   P    +Y++LSNVYA+A  W  V
Sbjct: 572 SGCLPDGILWMTLLGACRTHNKTDQAKAAAEQVLERDPSHSGAYVVLSNVYAAAGDWDGV 631

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
           +++RKLM    VKKEPG S IE     H F  G+ SHP +  I+  L  L++EM+  GY+
Sbjct: 632 NRMRKLMRSRGVKKEPGRSSIEILNRVHEFLEGDRSHPRRHPIYAELDVLNSEMRAAGYI 691

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           PDT  +LHD+E + KE  LF+HSERLA+A+GL+ + PGT LRV+KNLRVC DCH   K I
Sbjct: 692 PDTKMILHDVEDERKEDMLFYHSERLAIAFGLISTPPGTPLRVIKNLRVCSDCHTATKYI 751

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           S++  REI+VRD  R+H+FKDG+CSC D+W
Sbjct: 752 SKLRGREILVRDTHRFHNFKDGRCSCKDYW 781



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/416 (25%), Positives = 184/416 (44%), Gaps = 37/416 (8%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  L  CA  +       +H QI++ G      +   LI+ Y KC  V+ A    + + 
Sbjct: 108 YVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALINMYNKCGSVRGAWDSFKRLE 167

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            RD VSW +++ A  Q +       ++  M  LD + P+     ++  A G       GK
Sbjct: 168 HRDVVSWTAMIAACVQHDQFALARWLYRRM-QLDGVVPNKITLYTVFNAYGDPNYLSEGK 226

Query: 126 QVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
            V+   V S   + DV V +S V+M+   GL  +AR                        
Sbjct: 227 FVYG-LVSSGVMESDVRVMNSAVNMFGNAGLLGDAR------------------------ 261

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
                   +FE    R++  W  +++  VQ+ N  +A   F  ++++GV   D +    +
Sbjct: 262 -------RLFEDMVDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKAND-ITFVLM 313

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           +    +   L  GK IH LV   GY+    ++ A++ +Y +C     A  IF  M  KDV
Sbjct: 314 LNVYTSLTSLAKGKVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDV 373

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           ++WT + V  AQ+G  +E L L+ EM   G +P   T V ++  C+H+  + KGR++   
Sbjct: 374 ITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSH 433

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           +IE+      +   T L+++  + G + EA ++ + M  + D   W ++L A   H
Sbjct: 434 IIENR-FRMEMVVETALINMYGKCGKMAEAMSVFEKMA-KRDILVWNSMLGAYAQH 487



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 173/380 (45%), Gaps = 45/380 (11%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG-LPNNAR 160
           +PD   F +L++ C S      G++VH       F  +++V   L+ MYA+CG +P    
Sbjct: 1   KPDTAFFVALLQRCSSAKNVDHGRRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVP---- 56

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
                                       +A ++FE    +++F WT ++    Q  +   
Sbjct: 57  ----------------------------EAQQVFEILERKDVFAWTRMIGIYCQQGDYDR 88

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
           A   F +M+ E V +   +   +I+ ACA+   L+ G +IHG ++  G+E  +F+  A++
Sbjct: 89  ALGMFYQMQEEDV-MPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFVGTALI 147

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           +MY KC  +  A D F R+  +DVVSWT++I    QH Q      LY  M   GV PN++
Sbjct: 148 NMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAACVQHDQFALARWLYRRMQLDGVVPNKI 207

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           T   +  A      + +G+ ++  ++    +   ++     +++   +G L +A  L + 
Sbjct: 208 TLYTVFNAYGDPNYLSEGKFVY-GLVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFED 266

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPEDPSSYILLSNVYASAAMWQ 458
           M  + D  TW  +++    + N     R+   L    +K  D  +++L+ NVY S     
Sbjct: 267 M-VDRDVVTWNIVITLYVQNENFGEAVRLFGRLQQDGVKANDI-TFVLMLNVYTS----- 319

Query: 459 HVSKVRKLMSVMEVKKEPGY 478
            ++ + K   + E+ KE GY
Sbjct: 320 -LTSLAKGKVIHELVKEAGY 338



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 101/446 (22%), Positives = 186/446 (41%), Gaps = 68/446 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  +   G  Q   +   LI  Y +C  V  A  + E + ++D  +W  ++  Y Q 
Sbjct: 24  RRVHWHVRDRGFEQNNLVCGHLIQMYAQCGSVPEAQQVFEILERKDVFAWTRMIGIYCQQ 83

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + +F  M   D + P    + +++ AC S  + + G ++H   +   F  D  V
Sbjct: 84  GDYDRALGMFYQMQEED-VMPTKVTYVAILNACASTESLKDGMEIHGQILQQGFEGDVFV 142

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L++MY KCG    A   F  ++ ++ VSWTAM++A                      
Sbjct: 143 GTALINMYNKCGSVRGAWDSFKRLEHRDVVSWTAMIAA---------------------- 180

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                     VQ      A + +  M+ +GV + + + L ++  A  +   L  GK ++G
Sbjct: 181 ---------CVQHDQFALARWLYRRMQLDGV-VPNKITLYTVFNAYGDPNYLSEGKFVYG 230

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           LV +   ES + + N+ V+M+     +  A+ +F  M  +DVV+W  +I    Q+    E
Sbjct: 231 LVSSGVMESDVRVMNSAVNMFGNAGLLGDARRLFEDMVDRDVVTWNIVITLYVQNENFGE 290

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L+  +   GVK N++TFV ++   + +  + KG K+   ++++ G        T L+
Sbjct: 291 AVRLFGRLQQDGVKANDITFVLMLNVYTSLTSLAKG-KVIHELVKEAGYDRDAVVATALM 349

Query: 383 DLLSR-------------------------------SGHLDEAENLIKAMPFEPDEPTWA 411
            L  R                               +G   EA  L + M  E   PT A
Sbjct: 350 SLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQNGFRKEALQLFQEMQLEGRRPTSA 409

Query: 412 ---ALLSACKHHRNTEMGTRVANHLL 434
              A+L  C H    + G ++ +H++
Sbjct: 410 TLVAVLDTCAHLAALQKGRQIHSHII 435



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 107/210 (50%), Gaps = 5/210 (2%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  + + G  +   +   L+  YG+C+    A  +  +M  +D ++W  +  AY Q 
Sbjct: 327 KVIHELVKEAGYDRDAVVATALMSLYGRCEAPGQAWKIFVDMGSKDVITWTVMCVAYAQN 386

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ + +F  M  L+  +P      +++  C  L A + G+Q+H+  + + F  + VV
Sbjct: 387 GFRKEALQLFQEM-QLEGRRPTSATLVAVLDTCAHLAALQKGRQIHSHIIENRFRMEMVV 445

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           +++L++MY KCG    A +VF+ +  ++ + W +ML AYA+ G   + +++F Q  +  +
Sbjct: 446 ETALINMYGKCGKMAEAMSVFEKMAKRDILVWNSMLGAYAQHGYYDETLQLFNQMQLDGV 505

Query: 203 ----FLWTALVSGLVQSRNEIDAFYSFIEM 228
                 + +++S L  S +  D +  F+ M
Sbjct: 506 KADAVSFVSVLSALSHSGSVTDGYQYFVAM 535



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 88/200 (44%), Gaps = 16/200 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        + +H+ II+        +   LI+ YGKC  +  A  + E+M +RD 
Sbjct: 415 LDTCAHLAALQKGRQIHSHIIENRFRMEMVVETALINMYGKCGKMAEAMSVFEKMAKRDI 474

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           + W S+L AY Q     +T+ +F+ M  LD ++ D   F S++ A    G+   G Q   
Sbjct: 475 LVWNSMLGAYAQHGYYDETLQLFNQM-QLDGVKADAVSFVSVLSALSHSGSVTDGYQYFV 533

Query: 130 C----FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK--LKNSVSWTAMLSAYAR 183
                F ++P  +   +   +VD+  + G    A  +   +   L + + W  +L A  R
Sbjct: 534 AMLQDFSITPTPE---LYGCVVDLLGRAGRIQEAVDIVLKLSGCLPDGILWMTLLGA-CR 589

Query: 184 SGRKKD-----AMEIFEQAP 198
           +  K D     A ++ E+ P
Sbjct: 590 THNKTDQAKAAAEQVLERDP 609


>gi|297824049|ref|XP_002879907.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325746|gb|EFH56166.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 565

 Score =  406 bits (1044), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/570 (37%), Positives = 312/570 (54%), Gaps = 34/570 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N LI+ Y +   +  A  + +EMP R   +W +++    Q    ++ +S+F  M  L   
Sbjct: 29  NILINGYVRAGDLVSARKVFDEMPDRKLTTWNAMIAGLIQFEYNEEGLSLFREMHGLG-F 87

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            PD +   S+      L +  +G+Q+H   +      D VV SSL  MY           
Sbjct: 88  SPDEYTLGSVFSGSAGLRSVSIGQQIHGYAIKYGLELDLVVNSSLAHMYM---------- 137

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
                                R+G+ +D   +    PVRNL  W  L+ G  Q+      
Sbjct: 138 ---------------------RNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETV 176

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
            Y +  M+  G    + +   +++ +C++ A+   G+QIH   I +G  S + + ++++ 
Sbjct: 177 LYLYKMMKISGCR-PNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLIS 235

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV-SAGVKPNEV 340
           MY+KC  +  A   F     +D V W+S+I     HGQ +E + L++ M     ++ NEV
Sbjct: 236 MYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEV 295

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
            F+ L+YACSH GL  KG +LF  M+E YG  P L+HYTC++DLL R+G LD+AE +IK+
Sbjct: 296 AFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKS 355

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           MP +PD   W  LLSAC  H+N EM  +V   +L + P D + Y+LL+NV+ASA  W+ V
Sbjct: 356 MPIKPDPVIWKTLLSACNIHKNAEMAQKVFKEILEIDPNDSACYVLLANVHASAKRWRDV 415

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
           S+VRK M    VKKE G S+ E     H F  G+ S     EI+  L EL  EMK +GY 
Sbjct: 416 SEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYK 475

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           PDT+SVLHDM+++EKE  L  HSE+LAVA+ L+    G  +R++KNLRVC DCH+  K I
Sbjct: 476 PDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYI 535

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           S I  REI +RD +R+HHF +GKCSC D+W
Sbjct: 536 SVIMNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 158/306 (51%), Gaps = 3/306 (0%)

Query: 147 VDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWT 206
           + MY+K G   +A A+++ ++ KN +S   +++ Y R+G    A ++F++ P R L  W 
Sbjct: 1   MSMYSKLGDLPSAVALYERMRKKNFMSSNILINGYVRAGDLVSARKVFDEMPDRKLTTWN 60

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
           A+++GL+Q     +    F EM   G    D   L S+    A    + +G+QIHG  I 
Sbjct: 61  AMIAGLIQFEYNEEGLSLFREMHGLGFS-PDEYTLGSVFSGSAGLRSVSIGQQIHGYAIK 119

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
            G E  L +++++  MY +   +   + +   M  +++V+W ++I+G AQ+G  E  L L
Sbjct: 120 YGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYL 179

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
           Y  M  +G +PN++TFV ++ +CS + + G+G+++    I+  G +  +   + L+ + S
Sbjct: 180 YKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIK-IGASSVVAVVSSLISMYS 238

Query: 387 RSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYIL 446
           + G L +A         E DE  W++++SA   H   +   ++ N +      + +    
Sbjct: 239 KCGCLGDAAKAFSEREDE-DEVMWSSMISAYGFHGQGDEAIKLFNSMAEQTEMEVNEVAF 297

Query: 447 LSNVYA 452
           L+ +YA
Sbjct: 298 LNLLYA 303



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 66/319 (20%), Positives = 143/319 (44%), Gaps = 36/319 (11%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H   IK GL     + ++L   Y +   +Q    ++  MP R+ V+W +++    Q 
Sbjct: 111 QQIHGYAIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQN 170

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P+  + ++  M+ +   +P+   F +++ +C  L     G+Q+HA  +         V
Sbjct: 171 GCPETVLYLYK-MMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAV 229

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            SSL+ MY+KCG   +A   F   + ++ V W++M+SAY   G+  +A+++F        
Sbjct: 230 VSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIKLFNS------ 283

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                     +  + E++               V+ +   +++ AC++  + + G ++  
Sbjct: 284 ----------MAEQTEME---------------VNEVAFLNLLYACSHSGLKDKGLELFD 318

Query: 263 LVI-ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-DVVSWTSIIVGTAQHGQA 320
           +++   G++  L     +VD+  +   +  A+ I   M  K D V W +++     H  A
Sbjct: 319 MMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIKSMPIKPDPVIWKTLLSACNIHKNA 378

Query: 321 EETLALYDEMVSAGVKPNE 339
           E    ++ E++   + PN+
Sbjct: 379 EMAQKVFKEILE--IDPND 395


>gi|302804779|ref|XP_002984141.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
 gi|300147990|gb|EFJ14651.1| hypothetical protein SELMODRAFT_119895 [Selaginella moellendorffii]
          Length = 487

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 203/510 (39%), Positives = 306/510 (60%), Gaps = 32/510 (6%)

Query: 103 PDHFVFASLVKACG-SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           PD   F + + ACG +L   RLGK +H+C + +    + VV ++LV+MY K G  + A  
Sbjct: 8   PDKICFVATLNACGGALADLRLGKLIHSCVLEAGLESNTVVATALVNMYGKAGCLDEATR 67

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF  +  K+ VSWTA++SAY+R    ++A+++F +  +  L        G    R+    
Sbjct: 68  VFRGLGRKDLVSWTALMSAYSREDLYREALQLFREMTLHGL-------DGTKPDRS---- 116

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC-LFISNAIV 280
           +++F                  ++ ACA  +    G+  H  +   GY+S    +   I+
Sbjct: 117 YFAF------------------LLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGII 158

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           +MY KC ++ AA ++F  M  +D V+WT+II G A HG +EE+L ++  M   G KP+ V
Sbjct: 159 NMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMFWRMQQDGSKPDGV 218

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           + + ++  CSH GLV +G   F  + +++G+ P  +HY C++DLL RSG L+ AE +I+ 
Sbjct: 219 SLLCVLSVCSHAGLVEQGWDFFLDITKEFGVEPGEKHYGCMIDLLGRSGDLEAAEVMIRR 278

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           MPF+     WA  L+ACK H +TE G R A  +L L+P  P++Y+ LSN+YA+A  W  V
Sbjct: 279 MPFQATAMNWAIFLAACKVHSDTERGKRAAEKVLELEPV-PAAYVSLSNIYAAAGEWDQV 337

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
            +VR  M  M ++K+PG S IE     H F+AG+ SHP   EI+ LL  L  +M+  GYV
Sbjct: 338 DRVRSAMKAMGLQKDPGRSSIEVNSRVHEFWAGDKSHPRAAEIYGLLESLTRQMEGSGYV 397

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           PDT  VL ++ +++KER L +HSE+LA+A+GLL +  G+ LR++KNLRVCGDCH   K +
Sbjct: 398 PDTKLVLLNVSEEQKERLLCFHSEKLAIAFGLLSTPAGSSLRIIKNLRVCGDCHTAAKFV 457

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           SRI  REI +RD+ R+HHF+DG CSC D+W
Sbjct: 458 SRIAGREIFMRDSQRFHHFQDGHCSCGDYW 487



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 96/175 (54%), Gaps = 3/175 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H+ +++ GL     +   L++ YGK   +  A  +   + ++D VSW ++++AY++ 
Sbjct: 31  KLIHSCVLEAGLESNTVVATALVNMYGKAGCLDEATRVFRGLGRKDLVSWTALMSAYSRE 90

Query: 83  NLPQKTISIFSTML--ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF-CDD 139
           +L ++ + +F  M    LD  +PD   FA L++AC +L A   G+  H       +   D
Sbjct: 91  DLYREALQLFREMTLHGLDGTKPDRSYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSD 150

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
            V+   +++MY KCG    A  VFD +  +++V+WT ++S YA  G  ++++ +F
Sbjct: 151 GVLGLGIINMYGKCGNLRAAHEVFDGMSERDTVAWTTIISGYAHHGHSEESLLMF 205



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 90/206 (43%), Gaps = 14/206 (6%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQY-GPLPNTLIDAYGKCDLVQYAHHLLE 62
           S++   L+ CA    A   +  H +I + G     G L   +I+ YGKC  ++ AH + +
Sbjct: 116 SYFAFLLQACATLSAAAEGRLAHRRIQECGYDSSDGVLGLGIINMYGKCGNLRAAHEVFD 175

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
            M +RD V+W +I++ Y      ++++ +F  M   D  +PD      ++  C   G   
Sbjct: 176 GMSERDTVAWTTIISGYAHHGHSEESLLMFWRM-QQDGSKPDGVSLLCVLSVCSHAGLVE 234

Query: 123 LG----KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAM 177
            G      +   F + P    +     ++D+  + G    A  +   +  +  +++W   
Sbjct: 235 QGWDFFLDITKEFGVEP---GEKHYGCMIDLLGRSGDLEAAEVMIRRMPFQATAMNWAIF 291

Query: 178 LSA---YARSGRKKDAME-IFEQAPV 199
           L+A   ++ + R K A E + E  PV
Sbjct: 292 LAACKVHSDTERGKRAAEKVLELEPV 317


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 218/605 (36%), Positives = 332/605 (54%), Gaps = 43/605 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--R 67
           ++ CA   + +T K LH  + K G      +  +LI  YGKC L+  A  L +E PQ  +
Sbjct: 17  IKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLFDENPQSRK 76

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
             V + S+L+ Y   +  +  + +F  M  L  ++ +      LV+ CG  G   LG  V
Sbjct: 77  LTVCYNSLLSGYALNSRVKDVVVLFCEMRELG-VEINGVTMLGLVQPCGIPGNLGLGMCV 135

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           H       FC    VK  L DM +  G                      +L+ Y +SG  
Sbjct: 136 HG------FC----VKFGL-DMDSSVG--------------------NCLLTMYVKSGEI 164

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
               ++F++ P + L  W A+++G  Q+    +    + EM  +G    DPL L  ++ +
Sbjct: 165 DCGRKLFDEMPRKGLITWNAMINGYAQNGLANNVLELYKEMESKGF-CPDPLTLVGVLSS 223

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
           CA+   L +GK++   +   G+ S  F++NA+V+MYA+C ++  A+DIF  M  K VVSW
Sbjct: 224 CAHLGALSVGKEVERKMEGFGFSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSW 283

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           T+II G   HGQ E  + L+DEM+  G+KP+   FV ++ ACSH GL  KG   F  M  
Sbjct: 284 TAIIGGYGMHGQGEVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMER 343

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
            YG+ P  +HY+C++DLL R+G L+EA  LI++M    D   W ALL ACK HRN E+  
Sbjct: 344 KYGLRPGAEHYSCMVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAE 403

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
                ++ L+P +   Y+LLSNVY  A   + + +VR LM   ++KK+PG SY+EF    
Sbjct: 404 LAFEQVIELEPTNTGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYVEFKGRV 463

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKE--RQLFWHSER 545
           H+F+AG+ +HP  +EI++ L EL+        V D      +  ++ +E    +  HSE+
Sbjct: 464 HLFFAGDRNHPQTNEIYKKLNELE------NLVKDLDGCKKNDHERREEYLNSMGVHSEK 517

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LAVA+ LL +   T + ++KNLR+CGDCH+ +K++S+I  R+ VVRDATR+HHFK+G CS
Sbjct: 518 LAVAFALLNTRKETEIIIIKNLRICGDCHLFIKLVSKIVDRQFVVRDATRFHHFKNGFCS 577

Query: 606 CNDFW 610
           C ++W
Sbjct: 578 CKEYW 582


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/601 (35%), Positives = 328/601 (54%), Gaps = 2/601 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CA+ Q     + +   I +L L     + N L+D Y KC  +  A  + +E   ++ 
Sbjct: 247 ISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNL 306

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V + +I++ Y +  L ++ +++   ML     +PD     S V AC  L     GK  H 
Sbjct: 307 VLYNTIMSNYVRQGLAREVLAVLGEMLKHGP-RPDRITMLSAVSACSELDDVSCGKWCHG 365

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +     D V +++++MY KCG    A  VFD +  K  VSW ++++ + R+G  + 
Sbjct: 366 YVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMES 425

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A +IF   P  +L  W  ++  LVQ     +A   F  M+ EG+   D + +  +  AC 
Sbjct: 426 AWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGI-TADKVTMVGVASACG 484

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               L+L K IHG +        + +  A+VDM+A+C D  +A  +F +M ++DV +WT+
Sbjct: 485 YLGALDLAKWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTA 544

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
            I   A  G     + L+DEM+  G+KP+ V FV L+ A SH GLV +G  +F+SM + Y
Sbjct: 545 AIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIY 604

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI P   HY C++DLL R+G L EA +LI +M  EP++  W +LL+AC+ H+N ++    
Sbjct: 605 GIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKNVDIAAYA 664

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  +  L PE    ++LLSN+YASA  W  V+KVR  +      K PG S IE       
Sbjct: 665 AERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIEINGKIFE 724

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F  G+ SHP    I  +L E+   ++  GYVPD ++VL D+ +KEKE  L  HSE+LA+A
Sbjct: 725 FTTGDESHPEMTHIEPMLKEICCRLRDIGYVPDLTNVLLDVNEKEKEYLLSRHSEKLAIA 784

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           + L+ +  G  +RV KNLR+C DCH   K++S+   REI+VRD  R+H F+ G CSC D+
Sbjct: 785 FALISTGQGMPIRVAKNLRICSDCHSFAKLVSKSYSREIIVRDNNRFHFFQQGFCSCGDY 844

Query: 610 W 610
           W
Sbjct: 845 W 845



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 115/463 (24%), Positives = 194/463 (41%), Gaps = 68/463 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C +         +H  I+K+G  +   + N+LI  YG+C  +     + ++M +R+ 
Sbjct: 146 LSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNV 205

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S++  Y +    ++ +S+F  M+ +  ++P+      ++ AC  L   +LG+QV  
Sbjct: 206 VSWTSLIGGYAKRGCYKEAVSLFFEMVEVG-IRPNSVTMVGVISACAKLQDLQLGEQVCT 264

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
           C        + ++ ++LVDMY KCG  + AR +FD    KN V +  ++S Y R G  ++
Sbjct: 265 CIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLARE 324

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            + +                                 EM + G    D + + S V AC+
Sbjct: 325 VLAVLG-------------------------------EMLKHGPR-PDRITMLSAVSACS 352

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               +  GK  HG V+  G E    + NAI++MY KC     A  +F RM  K  VSW S
Sbjct: 353 ELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNS 412

Query: 310 IIVGTAQHGQAE-------------------------------ETLALYDEMVSAGVKPN 338
           +I G  ++G  E                               E + L+  M S G+  +
Sbjct: 413 LIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITAD 472

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           +VT VG+  AC ++G +    K     I+   I   +   T L+D+ +R G    A  + 
Sbjct: 473 KVTMVGVASACGYLGALDLA-KWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVF 531

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPE 439
             M  + D   W A + A     N      + + +L   +KP+
Sbjct: 532 NKM-VKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPD 573



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 111/433 (25%), Positives = 191/433 (44%), Gaps = 72/433 (16%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDA---YGKCDLVQYAHHLLEEMPQRD-----HVSWA 73
           +K LH+QI K GL+ +      LI +    G  + ++YA   LE   + +     H  ++
Sbjct: 49  LKQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFS 108

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           S++  ++   L  K I +F  ++ +  + PD+F F  ++ AC    A   G QVH   V 
Sbjct: 109 SLIRGFSACGLGYKAIVVFRQLMCMGAV-PDNFTFPFVLSACTKSAALTEGFQVHGAIVK 167

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
             F  D  V++SL+  Y +CG  +  R VFD +  +N VSWT+++  YA+ G  K+A+ +
Sbjct: 168 MGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSL 227

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
                                          F EM   G+   + + +  ++ ACA    
Sbjct: 228 -------------------------------FFEMVEVGIR-PNSVTMVGVISACAKLQD 255

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L+LG+Q+   +  L  E    + NA+VDMY KC  I  A+ IF     K++V + +I+  
Sbjct: 256 LQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSN 315

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV----------------GLVG- 356
             + G A E LA+  EM+  G +P+ +T +  + ACS +                GL G 
Sbjct: 316 YVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGW 375

Query: 357 -------------KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
                         G++     + D  +  +   +  L+    R+G ++ A  +  AMP 
Sbjct: 376 DNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMP- 434

Query: 404 EPDEPTWAALLSA 416
           + D  +W  ++ A
Sbjct: 435 DSDLVSWNTMIGA 447


>gi|22328675|ref|NP_193307.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75161477|sp|Q8VYH0.1|PP313_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g15720
 gi|18175616|gb|AAL59897.1| unknown protein [Arabidopsis thaliana]
 gi|20465541|gb|AAM20253.1| unknown protein [Arabidopsis thaliana]
 gi|332658240|gb|AEE83640.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 616

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/596 (37%), Positives = 334/596 (56%), Gaps = 40/596 (6%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LH   +KLG        N L+ +Y K   +  A  L +EM + + VSW S+++ YN    
Sbjct: 51  LHTLTLKLGFASDTFTVNHLVISYVKLKEINTARKLFDEMCEPNVVSWTSVISGYNDMGK 110

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           PQ  +S+F  M     + P+ + FAS+ KAC +L  +R+GK +HA   +S    + VV S
Sbjct: 111 PQNALSMFQKMHEDRPVPPNEYTFASVFKACSALAESRIGKNIHARLEISGLRRNIVVSS 170

Query: 145 SLVDMYAKCGLPNNARAVFDSI--KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           SLVDMY KC     AR VFDS+    +N VSWT+M++AYA++ R  +A+E+F        
Sbjct: 171 SLVDMYGKCNDVETARRVFDSMIGYGRNVVSWTSMITAYAQNARGHEAIELFRS------ 224

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
               AL S                       D  +  +L+S++ AC++   L+ GK  HG
Sbjct: 225 -FNAALTS-----------------------DRANQFMLASVISACSSLGRLQWGKVAHG 260

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           LV   GYES   ++ +++DMYAKC  +  A+ IF R+R   V+S+TS+I+  A+HG  E 
Sbjct: 261 LVTRGGYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMIMAKAKHGLGEA 320

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L+DEMV+  + PN VT +G+++ACSH GLV +G +    M E YG+ P  +HYTC++
Sbjct: 321 AVKLFDEMVAGRINPNYVTLLGVLHACSHSGLVNEGLEYLSLMAEKYGVVPDSRHYTCVV 380

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPT--WAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           D+L R G +DEA  L K +    ++    W ALLSA + H   E+ +  +  L+    + 
Sbjct: 381 DMLGRFGRVDEAYELAKTIEVGAEQGALLWGALLSAGRLHGRVEIVSEASKRLIQSNQQV 440

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
            S+YI LSN YA +  W+    +R  M      KE   S+IE     ++F+AG+ S    
Sbjct: 441 TSAYIALSNAYAVSGGWEDSESLRLEMKRSGNVKERACSWIENKDSVYVFHAGDLSCDES 500

Query: 501 DEIFELLTELDAEMKRRGY------VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLK 554
            EI   L +L+  MK RG+      +  +SSV  D++++ K+  +  H ERLA+AYGLL 
Sbjct: 501 GEIERFLKDLEKRMKERGHRGSSSMITTSSSVFVDVDEEAKDEMVSLHCERLALAYGLLH 560

Query: 555 SVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
              G+ +R++ NLR+C DCH   K+IS I +REIVVRD  R+H FK+G C+C D+W
Sbjct: 561 LPAGSTIRIMNNLRMCRDCHEAFKLISEIVEREIVVRDVNRFHCFKNGSCTCRDYW 616



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 103/177 (58%), Gaps = 3/177 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP--QRDHVSWASILTAYN 80
           K +HA++   GL +   + ++L+D YGKC+ V+ A  + + M    R+ VSW S++TAY 
Sbjct: 151 KNIHARLEISGLRRNIVVSSSLVDMYGKCNDVETARRVFDSMIGYGRNVVSWTSMITAYA 210

Query: 81  QANLPQKTISIFSTM-LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
           Q     + I +F +   AL   + + F+ AS++ AC SLG  + GK  H       +  +
Sbjct: 211 QNARGHEAIELFRSFNAALTSDRANQFMLASVISACSSLGRLQWGKVAHGLVTRGGYESN 270

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
            VV +SL+DMYAKCG  + A  +F  I+  + +S+T+M+ A A+ G  + A+++F++
Sbjct: 271 TVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMIMAKAKHGLGEAAVKLFDE 327



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 86/205 (41%), Gaps = 20/205 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K  H  + + G      +  +L+D Y KC  +  A  +   +     +S+ S++ A  + 
Sbjct: 256 KVAHGLVTRGGYESNTVVATSLLDMYAKCGSLSCAEKIFLRIRCHSVISYTSMIMAKAKH 315

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS-PFCDDDV 141
            L +  + +F  M+A  ++ P++     ++ AC   G    G +  +          D  
Sbjct: 316 GLGEAAVKLFDEMVA-GRINPNYVTLLGVLHACSHSGLVNEGLEYLSLMAEKYGVVPDSR 374

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKL---KNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
             + +VDM  + G  + A  +  +I++   + ++ W A+LSA    GR    +EI  +A 
Sbjct: 375 HYTCVVDMLGRFGRVDEAYELAKTIEVGAEQGALLWGALLSA----GRLHGRVEIVSEAS 430

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFY 223
            R           L+QS  ++ + Y
Sbjct: 431 KR-----------LIQSNQQVTSAY 444


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 216/590 (36%), Positives = 337/590 (57%), Gaps = 9/590 (1%)

Query: 25  LHAQIIKLGLHQYG--PLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           LHA +++ GL       +   L  AY     +  +  LL        + + S + A++  
Sbjct: 308 LHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDPTAIFYTSAIHAHSSR 367

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 +++ S MLA   L   H + ASL  AC  L     G+ +H          D  V
Sbjct: 368 GHRLPALALLSDMLAQGLLPTAHTLSASL-PACRGLSP---GRALHGYAFKLALAGDSYV 423

Query: 143 KSSLVDMYAKCGLPNNARAVFDS-IKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
            ++L+ MYA+ G    ARA+FD  +   + VS TAML+ YA  G   DA  +F+  P ++
Sbjct: 424 ATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDGLPTKD 483

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
              W A++ G  Q     +A   F  M   GV+  D + +  ++ A A    +E GK +H
Sbjct: 484 FVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVE-PDEVTVVLVLSAVAQLGTVESGKWLH 542

Query: 262 GLVI-ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
             V  +   +  + +  A++DMY KC  +  A D+F  +  KD+V W ++I G A HG +
Sbjct: 543 SYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAMHGDS 602

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
            + L ++ +    G+ P ++TF+GL+ ACSH G+V +GR+ F+SM  +YGI P ++HY C
Sbjct: 603 RKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIEHYGC 662

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DLL R+G + EA  L+++M   PD   W +LL+AC+ H+N  +G ++A++L++    +
Sbjct: 663 MVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAKGLAN 722

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
              YILLSN+YA+   W  V++VR +M    ++KEPG S IE  +  + F AG+ SHP  
Sbjct: 723 SGMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCSSIEIDREVYEFVAGDMSHPRT 782

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
           DEI+ +L +++  +K  G+VP T  VLHD+++  KE+ L  HSE+LA+A+GL+ + PG  
Sbjct: 783 DEIYVMLDKMNGLVKEHGHVPQTELVLHDLDEATKEKALAVHSEKLALAFGLISTQPGAT 842

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +++VKNLR C DCH V+K+ISRIT R+IV RD  R+HHF DG CSC D+W
Sbjct: 843 IKIVKNLRACSDCHAVLKLISRITGRKIVFRDRNRFHHFVDGSCSCGDYW 892


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/481 (41%), Positives = 304/481 (63%), Gaps = 3/481 (0%)

Query: 132 VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
           +L  F     V++SL+  Y  CG    AR VFD + +K+ +SWT+++ AY+R      A 
Sbjct: 185 LLGGFDKHRFVENSLISAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAE 244

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
           E+F   PV+++  WTA+V+G  Q+   + A  +F +M   G+ I D + L+  + ACA  
Sbjct: 245 EVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPI-DEVSLTGAISACAQL 303

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
             ++    +  +    G    + + + +VDMYAKC  I  A+ +F  M  K+V +++S+I
Sbjct: 304 GAVKRAAWVQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMI 363

Query: 312 VGTAQHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370
           VG A HG+A + +AL+++MV  A V+PN VTF+G++ ACSH G+V +GR  F  M + YG
Sbjct: 364 VGLASHGRANDVIALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYG 423

Query: 371 ITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVA 430
           I PS  HY C++DLL+RSG + EA +L+K+M  EP    W ALL AC+ H NTE+    A
Sbjct: 424 ILPSADHYACMVDLLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAA 483

Query: 431 NHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG-SHI 489
            HL  L+PE   +Y+LLSN  ASA  W  VSK+RKLM +  +KK+P  S+ E   G  H 
Sbjct: 484 EHLFRLEPEGIGNYVLLSNTLASAGEWDEVSKLRKLMRIRGLKKDPAVSWFEGRDGFVHQ 543

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F+AG+ +HP   EI + L EL  ++   GYVP  SSV++++ ++EKER L  HSE+LA++
Sbjct: 544 FFAGDNTHPSMHEIKKRLLELREKLNLAGYVPILSSVVYNVSEEEKERLLMGHSEKLALS 603

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GLL     + +R+VKNLR+C DCH+ ++++S++   EI+VRD  R+HHF+DG+CSC  F
Sbjct: 604 FGLLTLESRSSIRIVKNLRICEDCHLFIRLVSKVEPIEILVRDNMRFHHFRDGECSCGGF 663

Query: 610 W 610
           W
Sbjct: 664 W 664



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 84/193 (43%), Gaps = 32/193 (16%)

Query: 33  GLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN------------ 80
           G  ++  + N+LI AY  C  V  A  + +EM  +D +SW SI+ AY+            
Sbjct: 188 GFDKHRFVENSLISAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVF 247

Query: 81  -------------------QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
                              Q  +P K +  F  M A+  +  D       + AC  LGA 
Sbjct: 248 ALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQM-AVAGMPIDEVSLTGAISACAQLGAV 306

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
           +    V      +    + VV S LVDMYAKCGL + AR VF+ +  KN  ++++M+   
Sbjct: 307 KRAAWVQEIAERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGL 366

Query: 182 ARSGRKKDAMEIF 194
           A  GR  D + +F
Sbjct: 367 ASHGRANDVIALF 379



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/142 (23%), Positives = 68/142 (47%), Gaps = 8/142 (5%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           L+D Y KC L+  A  + E M  ++  +++S++            I++F+ M+    ++P
Sbjct: 331 LVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVIALFNDMVRRADVEP 390

Query: 104 DHFVFASLVKACGSLGATRLGK----QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           +H  F  ++ AC   G  + G+    Q+   + + P  D     + +VD+ A+ GL   A
Sbjct: 391 NHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADH---YACMVDLLARSGLVTEA 447

Query: 160 RAVFDSIKLK-NSVSWTAMLSA 180
             +  S+ ++ +   W A+L A
Sbjct: 448 LDLVKSMTVEPHGGVWGALLGA 469


>gi|297850056|ref|XP_002892909.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297338751|gb|EFH69168.1| hypothetical protein ARALYDRAFT_889039 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1038

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/589 (35%), Positives = 331/589 (56%), Gaps = 34/589 (5%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            + LH  ++  GL     + N L+  YGK   +  +  +L +MP+RD V+W +++  Y + 
Sbjct: 483  RILHGLVVVSGLFDNQIIGNALVSMYGKIGGMSTSRRVLLQMPRRDVVAWNALIGGYAEN 542

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG-ATRLGKQVHACFVLSPFCDDDV 141
              P K ++ F T L ++ +  ++    S++ AC   G     GK +HA  V + F  D+ 
Sbjct: 543  EDPDKALAAFQT-LRVEGVSANYITVVSVLSACLVPGDLLERGKPLHAYIVSAGFESDEH 601

Query: 142  VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
            VK+SL+ MYAKCG  ++++ +F+ +  ++ ++W A+L+A A  G  ++ +++  +     
Sbjct: 602  VKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGEEVLKLVSK----- 656

Query: 202  LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                                      MR  G+ + D    S  + A A  AVLE G+Q+H
Sbjct: 657  --------------------------MRSFGLSL-DQFSFSEGLSAAAKLAVLEEGQQLH 689

Query: 262  GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
            GL + LG+E   FI NA  DMY+KC +I     +      + + SW  +I    +HG  E
Sbjct: 690  GLAVKLGFELDCFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGYFE 749

Query: 322  ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
            E    + EM+  G+KP  VTFV L+ ACSH GLV +G   +  + +D+G+ P+++H  C+
Sbjct: 750  EVCETFHEMLEMGIKPGHVTFVSLLTACSHGGLVDQGLAYYDMIAKDFGLEPAIEHCICV 809

Query: 382  LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
            +DLL RSG L EAE  I  MP +P++  W +LL++CK HR+ + G + A +L  L+PED 
Sbjct: 810  IDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHRDLDRGRKAAENLSKLEPEDD 869

Query: 442  SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            S ++L SN++A+   W+ V  VRK M    +KK+   S+++       F  G+ +HP   
Sbjct: 870  SVFVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQTM 929

Query: 502  EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            EI+  L ++   +K  GYV DTS  L D ++++KE  L+ HSERLA+AY L+ +  G+ +
Sbjct: 930  EIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGSTV 989

Query: 562  RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            R+ KNLR+C DCH V K +SR+  R IV+RD  R+HHF+ G CSC D+W
Sbjct: 990  RIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFESGLCSCKDYW 1038



 Score =  154 bits (390), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 192/398 (48%), Gaps = 38/398 (9%)

Query: 21  TVKTLHAQIIKLGLHQYGPL-PNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           T + LHA  +K GL +   L  NTLI+ Y K   V+ A +L ++MP R+ VSW ++++  
Sbjct: 76  TGRALHALCVK-GLVRLSVLHTNTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGI 134

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT-RLGKQVHACFVLSPFCD 138
            +  L  + +  F  M  L  ++P  FV ASLV ACG  G+  R G QVH     S    
Sbjct: 135 VRVGLYLEGMEFFQKMCDLG-IKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLS 193

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  V ++++ +Y   GL + +R VF+ +  +N VSWT+++  Y+  G  ++ ++I++   
Sbjct: 194 DVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKS-- 251

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
                                        MR EGV+  +   +S ++ +C       LG+
Sbjct: 252 -----------------------------MRGEGVE-CNENSMSLVISSCGLLKDESLGR 281

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           QI G VI  G ES L + N+++ M+    ++  A  IF ++  +D +SW SI+   AQ+G
Sbjct: 282 QIIGQVIKSGLESKLAVENSLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNG 341

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
             EE+  +++ M     + N  T   L+     V     GR +   ++   G    +   
Sbjct: 342 HIEESSRIFNLMRRFHDEVNSTTVSTLLSVLGDVDHQKWGRGI-HGLVVKMGFDSVVCVC 400

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             LL + + +G  +EA+ + K MP   D  +W +L+++
Sbjct: 401 NTLLRMYAGAGRSEEADLVFKQMP-TKDLISWNSLMAS 437



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 190/401 (47%), Gaps = 40/401 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  ++K+G      + NTL+  Y      + A  + ++MP +D +SW S++ ++   
Sbjct: 382 RGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVND 441

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 + I  +M+   K   ++  F S + AC S      G+ +H   V+S   D+ ++
Sbjct: 442 GRSLDALGILCSMIRTGK-SVNYVTFTSALAACFSPEFFDKGRILHGLVVVSGLFDNQII 500

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LV MY K G  + +R                                +  Q P R++
Sbjct: 501 GNALVSMYGKIGGMSTSR-------------------------------RVLLQMPRRDV 529

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC-ANFAVLELGKQIH 261
             W AL+ G  ++ +   A  +F  +R EGV   + + + S++ AC     +LE GK +H
Sbjct: 530 VAWNALIGGYAENEDPDKALAAFQTLRVEGVS-ANYITVVSVLSACLVPGDLLERGKPLH 588

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             +++ G+ES   + N+++ MYAKC D+ +++D+F  +  + +++W +I+   A HG  E
Sbjct: 589 AYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLDNRSIITWNAILAANAHHGHGE 648

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L L  +M S G+  ++ +F   + A + + ++ +G++L    ++  G       +   
Sbjct: 649 EVLKLVSKMRSFGLSLDQFSFSEGLSAAAKLAVLEEGQQLHGLAVK-LGFELDCFIFNAA 707

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDE--PTWAALLSACKHH 420
            D+ S+ G + E   ++K +P   +   P+W  L+SA   H
Sbjct: 708 ADMYSKCGEIGE---VVKMLPPSVNRSLPSWNILISALGRH 745



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 182/392 (46%), Gaps = 35/392 (8%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  + K GL     +   ++  YG   LV  +  + EEMP R+ VSW S++  Y+    
Sbjct: 182 VHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGE 241

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P++ I I+ +M   + ++ +    + ++ +CG L    LG+Q+    + S       V++
Sbjct: 242 PEEVIDIYKSMRG-EGVECNENSMSLVISSCGLLKDESLGRQIIGQVIKSGLESKLAVEN 300

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SL+ M+   G  + A  +F+ I  ++++SW ++++AYA++G  +++  IF      NL  
Sbjct: 301 SLISMFGNMGNVDYANYIFNQISERDTISWNSIVAAYAQNGHIEESSRIF------NL-- 352

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                                  MRR   D V+   +S+++    +    + G+ IHGLV
Sbjct: 353 -----------------------MRRFH-DEVNSTTVSTLLSVLGDVDHQKWGRGIHGLV 388

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           + +G++S + + N ++ MYA       A  +F +M  KD++SW S++      G++ + L
Sbjct: 389 VKMGFDSVVCVCNTLLRMYAGAGRSEEADLVFKQMPTKDLISWNSLMASFVNDGRSLDAL 448

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            +   M+  G   N VTF   + AC       KGR +   ++   G+  +      L+ +
Sbjct: 449 GILCSMIRTGKSVNYVTFTSALAACFSPEFFDKGR-ILHGLVVVSGLFDNQIIGNALVSM 507

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             + G +  +  ++  MP   D   W AL+  
Sbjct: 508 YGKIGGMSTSRRVLLQMP-RRDVVAWNALIGG 538



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 139/272 (51%), Gaps = 4/272 (1%)

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
             +++ Y + GR K A  +F++ PVRN   W  ++SG+V+    ++    F +M   G+ 
Sbjct: 97  NTLINMYTKFGRVKPARYLFDKMPVRNEVSWNTMMSGIVRVGLYLEGMEFFQKMCDLGIK 156

Query: 235 IVDPLVLSSIVGACA-NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
                V++S+V AC  + ++   G Q+HG V   G  S +++S AI+ +Y     +  ++
Sbjct: 157 -PSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSR 215

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
            +F  M  ++VVSWTS++VG +  G+ EE + +Y  M   GV+ NE +   +I +C  + 
Sbjct: 216 KVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKSMRGEGVECNENSMSLVISSCGLLK 275

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
               GR++   +I+  G+   L     L+ +    G++D A N I     E D  +W ++
Sbjct: 276 DESLGRQIIGQVIKS-GLESKLAVENSLISMFGNMGNVDYA-NYIFNQISERDTISWNSI 333

Query: 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYI 445
           ++A   + + E  +R+ N +     E  S+ +
Sbjct: 334 VAAYAQNGHIEESSRIFNLMRRFHDEVNSTTV 365


>gi|449455172|ref|XP_004145327.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449474033|ref|XP_004154055.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449510921|ref|XP_004163811.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 649

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 207/591 (35%), Positives = 337/591 (57%), Gaps = 37/591 (6%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  ++  G  Q   L   LI+ + + D V  A  + ++  +R    W ++  A   A  
Sbjct: 91  VHQLLVDGGFDQDPFLATKLINMFSELDTVDNARKVFDKTRKRTIYVWNALFRALALAGR 150

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGS----LGATRLGKQVHACFVLSPFCDDD 140
               + ++  M  +  +  D F +  L+KAC +    +   + GK++HA  +   +    
Sbjct: 151 GNDVLELYPRMNMMG-VSSDRFTYTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHV 209

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V ++L+DMYA+ G  + A AV                               F++ PV+
Sbjct: 210 HVMTTLMDMYARFGCVSYASAV-------------------------------FDEMPVK 238

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQ 259
           N+  W+A+++   ++    +A   F EM     D V + + + S++ ACA FA LE GK 
Sbjct: 239 NVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAALEQGKL 298

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           IH  ++  G +S L + +A++ MYA+C  + + + IF RM +KDVV W S+I     HG 
Sbjct: 299 IHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLISSYGLHGY 358

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
             + + +++EM+  G  P+ ++F+ ++ ACSH GLV +G+KLF+SM++++GI PS++HY 
Sbjct: 359 GRKAIKIFEEMIDHGFSPSHISFISVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYA 418

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++DLL R+  LDEA  +I+ +  EP    W +LL AC+ H + E+  R +  L  L+P 
Sbjct: 419 CMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGACRIHCHVELAERASKRLFKLEPT 478

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           +  +Y+LL+++YA A MW  V +V+KL+   E++K PG S+IE  +  + F + +  +P 
Sbjct: 479 NAGNYVLLADIYAEAEMWDEVKRVKKLLDSRELQKVPGRSWIEVRRKIYSFTSVDEFNPQ 538

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
            +++  LL  L  EMK+RGY P T  VL+D++Q+EKER +  HSE+LAVA+GL+ +  G 
Sbjct: 539 GEQLHALLVNLSNEMKQRGYTPQTKLVLYDLDQEEKERIVLGHSEKLAVAFGLINTSKGD 598

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +R+ KNLR+C DCH V K IS+   REI+VRD  R+HHFKDG CSC D+W
Sbjct: 599 TIRITKNLRLCEDCHSVTKFISKFADREIMVRDLNRFHHFKDGVCSCGDYW 649



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/308 (25%), Positives = 146/308 (47%), Gaps = 52/308 (16%)

Query: 6   YLHRLRVCARHQIALTV----KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
           Y + L+ C   +  ++     K +HA I++ G   +  +  TL+D Y +   V YA  + 
Sbjct: 173 YTYLLKACVASECLVSFLQKGKEIHAHILRHGYGAHVHVMTTLMDMYARFGCVSYASAVF 232

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIF-STMLALDKLQPDHFVFASLVKACGSLGA 120
           +EMP ++ VSW++++  Y +   P + + +F   ML      P+     S+++AC +  A
Sbjct: 233 DEMPVKNVVSWSAMIACYAKNGKPYEALELFREMMLNTHDSVPNSVTMVSVLQACAAFAA 292

Query: 121 TRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
              GK +HA ++L    D  + V S+L+ MYA+CG   + + +FD +  K+ V W +++S
Sbjct: 293 LEQGKLIHA-YILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDVVLWNSLIS 351

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
           +Y   G  + A++IFE+           +  G   S        SFI             
Sbjct: 352 SYGLHGYGRKAIKIFEE----------MIDHGFSPSH------ISFI------------- 382

Query: 240 VLSSIVGACANFAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
              S++GAC++  ++E GK++       HG+  ++ + +C+      VD+  + + +  A
Sbjct: 383 ---SVLGACSHTGLVEEGKKLFESMVKEHGIQPSVEHYACM------VDLLGRANRLDEA 433

Query: 293 KDIFGRMR 300
             I   +R
Sbjct: 434 AKIIEDLR 441



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 3/173 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA        K +HA I++ GL    P+ + LI  Y +C  ++    + + M ++D 
Sbjct: 284 LQACAAFAALEQGKLIHAYILRRGLDSILPVISALITMYARCGKLESGQLIFDRMHKKDV 343

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V W S++++Y      +K I IF  M+      P H  F S++ AC   G    GK++  
Sbjct: 344 VLWNSLISSYGLHGYGRKAIKIFEEMID-HGFSPSHISFISVLGACSHTGLVEEGKKLFE 402

Query: 130 CFVLSPFCDDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSA 180
             V        V   + +VD+  +    + A  + + ++++     W ++L A
Sbjct: 403 SMVKEHGIQPSVEHYACMVDLLGRANRLDEAAKIIEDLRIEPGPKVWGSLLGA 455


>gi|356567494|ref|XP_003551954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Glycine max]
          Length = 722

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/598 (36%), Positives = 330/598 (55%), Gaps = 42/598 (7%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTA 78
           V+ LH  ++  G   Y  + N ++  Y +   +  A  +  EM +   RD VSW +++ A
Sbjct: 158 VRQLHCFVVVCGYDCYASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVA 217

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
             Q     + + +F  M+    L+ D F  AS++ A   +     G Q H   + S F  
Sbjct: 218 CGQHREGLEAVELFREMVR-RGLKVDMFTMASVLTAFTCVKDLVGGMQFHGMMIKSGFHG 276

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           +  V S L+D+Y+KC                              +G   +  ++FE+  
Sbjct: 277 NSHVGSGLIDLYSKC------------------------------AGGMVECRKVFEEIA 306

Query: 199 VRNLFLWTALVSGLVQSRN-EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
             +L LW  ++SG  Q  +   D  + F EM+  G    D      +  AC+N +   +G
Sbjct: 307 APDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFH-PDDCSFVCVTSACSNLSSPSVG 365

Query: 258 KQIHGLVIA--LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
           KQ+H L I   + Y   + ++NA+V MY+KC ++  A+ +F  M   ++VS  S+I G A
Sbjct: 366 KQVHALAIKSDIPYNR-VSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYA 424

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
           QHG   E+L L++ M+   + PN +TF+ ++ AC H G V +G+K F  M E + I P  
Sbjct: 425 QHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPEA 484

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
           +HY+C++DLL R+G L EAE +I+ MPF P    WA LL AC+ H N E+  + AN  L 
Sbjct: 485 EHYSCMIDLLGRAGKLKEAERIIETMPFNPGSIEWATLLGACRKHGNVELAVKAANEFLQ 544

Query: 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGET 495
           L+P + + Y++LSN+YASAA W+  + V++LM    VKK+PG S+IE  K  H+F A +T
Sbjct: 545 LEPYNAAPYVMLSNMYASAARWEEAATVKRLMRERGVKKKPGCSWIEIDKKVHVFVAEDT 604

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVL---HDMEQKEKERQLFWHSERLAVAYGL 552
           SHP+  EI   + E+  +MK+ GYVPD    L    ++E  EKER+L +HSE+LAVA+GL
Sbjct: 605 SHPMIKEIHVYMGEILRKMKQAGYVPDIRWALVKDEEVEPDEKERRLLYHSEKLAVAFGL 664

Query: 553 LKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + +     + VVKNLR+CGDCH  +K+IS IT REI VRD  R+H FK+G CSC D+W
Sbjct: 665 ISTEEWVPILVVKNLRICGDCHNAIKLISAITGREITVRDTHRFHCFKEGHCSCGDYW 722



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 114/463 (24%), Positives = 203/463 (43%), Gaps = 85/463 (18%)

Query: 24  TLHAQIIKLGLHQYGPL--PNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           +LH       L QY  +   NTLI+AY K  L+  A  + +E+PQ D VS+ +++ AY  
Sbjct: 59  SLHNAQTSFDLTQYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYAD 118

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
               +  + +F+ +  L +   D F  + ++ ACG      L +Q+H CFV+   C  D 
Sbjct: 119 RGECRPALRLFAEVREL-RFGLDGFTLSGVIIACGD--DVGLVRQLH-CFVV--VCGYDC 172

Query: 142 ---VKSSLVDMYAKCGLPNNARAVFDSIKL---KNSVSWTAMLSAYARSGRKKDAMEIFE 195
              V ++++  Y++ G  N AR VF  +     ++ VSW AM+ A               
Sbjct: 173 YASVNNAVLACYSRKGFLNEARRVFREMGEGGGRDEVSWNAMIVACG------------- 219

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
                             Q R  ++A   F EM R G+  VD   ++S++ A      L 
Sbjct: 220 ------------------QHREGLEAVELFREMVRRGLK-VDMFTMASVLTAFTCVKDLV 260

Query: 256 LGKQIHGLVIALGYESCLFISNAIVDMYAKCS-DIIAAKDIFGRMRRKDVVSWTSIIVGT 314
            G Q HG++I  G+     + + ++D+Y+KC+  ++  + +F  +   D+V W ++I G 
Sbjct: 261 GGMQFHGMMIKSGFHGNSHVGSGLIDLYSKCAGGMVECRKVFEEIAAPDLVLWNTMISGF 320

Query: 315 AQHGQ-AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
           +Q+   +E+ +  + EM   G  P++ +FV +  ACS++     G+++    I+      
Sbjct: 321 SQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSVGKQVHALAIKSDIPYN 380

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMP--------------------------FE--- 404
            +     L+ + S+ G++ +A  +   MP                          FE   
Sbjct: 381 RVSVNNALVAMYSKCGNVHDARRVFDTMPEHNMVSLNSMIAGYAQHGVEVESLRLFELML 440

Query: 405 -----PDEPTWAALLSACKHHRNTEMGTRVANHL---LSLKPE 439
                P+  T+ A+LSAC H    E G +  N +     ++PE
Sbjct: 441 QKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMMKERFRIEPE 483



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 112/486 (23%), Positives = 213/486 (43%), Gaps = 60/486 (12%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
            F +L+KAC +      GK +HA +  S       + +    +Y+KCG  +NA+  FD  
Sbjct: 11  TFRNLLKACIAQRDLITGKTLHALYFKSLIPPSTYLSNHFTLLYSKCGSLHNAQTSFDLT 70

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
           +  N  S+  +++AYA+      A ++F++ P  ++  +  L++          A   F 
Sbjct: 71  QYPNVFSYNTLINAYAKHSLIHLARQVFDEIPQPDIVSYNTLIAAYADRGECRPALRLFA 130

Query: 227 EMR--REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284
           E+R  R G   +D   LS ++ AC +   + L +Q+H  V+  GY+    ++NA++  Y+
Sbjct: 131 EVRELRFG---LDGFTLSGVIIACGD--DVGLVRQLHCFVVVCGYDCYASVNNAVLACYS 185

Query: 285 KCSDIIAAKDIFGRMRR---KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           +   +  A+ +F  M     +D VSW ++IV   QH +  E + L+ EMV  G+K +  T
Sbjct: 186 RKGFLNEARRVFREMGEGGGRDEVSWNAMIVACGQHREGLEAVELFREMVRRGLKVDMFT 245

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR-SGHLDEAENLIK- 399
              ++ A + V  +  G +    MI+  G   +    + L+DL S+ +G + E   + + 
Sbjct: 246 MASVLTAFTCVKDLVGGMQFHGMMIKS-GFHGNSHVGSGLIDLYSKCAGGMVECRKVFEE 304

Query: 400 -AMP---------------------------------FEPDEPTWAALLSACKHHRNTEM 425
            A P                                 F PD+ ++  + SAC +  +  +
Sbjct: 305 IAAPDLVLWNTMISGFSQYEDLSEDGIWCFREMQHNGFHPDDCSFVCVTSACSNLSSPSV 364

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G +V  H L++K + P + + ++N  A  AM+     V     V +    P ++ +    
Sbjct: 365 GKQV--HALAIKSDIPYNRVSVNN--ALVAMYSKCGNVHDARRVFDTM--PEHNMVSLNS 418

Query: 486 GSHIFYAGETSHPLKDE---IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWH 542
                 AG   H ++ E   +FEL+ + D       ++   S+ +H  + +E ++     
Sbjct: 419 ----MIAGYAQHGVEVESLRLFELMLQKDIAPNTITFIAVLSACVHTGKVEEGQKYFNMM 474

Query: 543 SERLAV 548
            ER  +
Sbjct: 475 KERFRI 480


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/558 (37%), Positives = 328/558 (58%), Gaps = 10/558 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNT---LIDAYGKCDLVQYAHHLLE--EMPQRDHVSWASIL 76
           ++ +HAQIIK        LP T   L+ A+       YA  + E  E  + +   W S L
Sbjct: 44  LRQVHAQIIKTNA-PLSILPLTRVGLVCAFTPS--FHYAQQIFECVEKQKPETFVWNSCL 100

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
            A  + + P   I +F  +   D + PD F  +S+++AC +L     G+ +H       F
Sbjct: 101 KALAEGDSPIDAIMLFYRLRQYD-VCPDTFTCSSVLRACLNLLDLSNGRILHGVVEKVGF 159

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             +  +++ +V +YA CG    AR +F+ +  ++ V+W  M++   + G  + A ++F +
Sbjct: 160 RSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSR 219

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
            P RN+  WT++++G VQ     +A + F +M   GV   + + + +++ ACA+   L+L
Sbjct: 220 MPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEAGVK-CNEVTVVAVLAACADLGALDL 278

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           G +IH      G++  + ISN ++DMY KC  +  A  +F  M  + VVSW+++I G A 
Sbjct: 279 GMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAM 338

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           HG+AEE L L+ +M   G++PN VTF+GL++ACSH+GL+ +GR+ F SM  DYGI P ++
Sbjct: 339 HGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIE 398

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
           HY C++DLLSR+G L EA   I  MP +P+   W ALL AC+ H+N EM      HLL L
Sbjct: 399 HYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLEL 458

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETS 496
            P +   Y++LSN+YA A  W+  ++VRK M   +VKK PG+S I      H F AGE S
Sbjct: 459 DPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEES 518

Query: 497 HPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSV 556
           HP  ++IF+   EL  EM+ +GYVP+TS VL D+E+ EK + +  HSE+LA+ +GL+ + 
Sbjct: 519 HPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTP 578

Query: 557 PGTVLRVVKNLRVCGDCH 574
             T +R++KNLR+C DCH
Sbjct: 579 AETPIRIMKNLRICEDCH 596



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 32/216 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C         + LH  + K+G      L N ++  Y  C  +  A  L E+MPQRD 
Sbjct: 135 LRACLNLLDLSNGRILHGVVEKVGFRSNLYLQNMIVHLYASCGEMGEARLLFEKMPQRDV 194

Query: 70  V-------------------------------SWASILTAYNQANLPQKTISIFSTMLAL 98
           V                               SW S++  Y Q    ++ I +F+ M   
Sbjct: 195 VTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGYVQCGKAKEAIHLFAKMEEA 254

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
             ++ +     +++ AC  LGA  LG ++H       F  +  + ++L+DMY KCG    
Sbjct: 255 G-VKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEE 313

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
           A  VF+ ++ +  VSW+AM+   A  GR ++A+ +F
Sbjct: 314 ACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLF 349


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/601 (34%), Positives = 341/601 (56%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L++CA+ ++ L  K  HAQI+ +GL       N LI+ Y KC  V +A  + +EMP R  
Sbjct: 71  LKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSL 130

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++ +  Q     + + +   M   +      F  +S++ AC +  A    + +HA
Sbjct: 131 VSWNTMIGSLTQNGEENEALDLLLQM-QREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
            F +    D +V  +                              TA+L  YA+ G  KD
Sbjct: 190 -FAIKAAMDLNVFVA------------------------------TALLDVYAKCGLMKD 218

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +FE  P R++  W+++ +G VQ+     A   F +    G+   D  ++SS++ ACA
Sbjct: 219 AVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLK-HDQFLMSSVICACA 277

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
             A +  GKQ++ L+   G+ S +F++++++DMYAKC  I  +  +F  + +++VV W +
Sbjct: 278 GLAAMIEGKQVNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNA 337

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G ++H ++ E + L+++M   G+ PN+VTFV ++ AC H+GLV KG+K F  M +++
Sbjct: 338 MISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVKKGQKYFDLMTKEH 397

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            + P++ HY+C++D LSR+G + EA +LI  +PF      W +LL++C+ H N E+    
Sbjct: 398 HLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVA 457

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  L  ++P +  +Y+LLSN+YA+   W  V+K+RKL+   +VKKE G S+IE     H+
Sbjct: 458 AKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHL 517

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F  GE +HP   EI+  L E+  E+++ GY  +T   LH + +  K+  L  HSE+LA  
Sbjct: 518 FMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFT 577

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
            GLL   P   +R++KNLR+CGDCH  MK+ S+   R+++VRD  R+HHFK+G CSC DF
Sbjct: 578 MGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDF 637

Query: 610 W 610
           W
Sbjct: 638 W 638



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 89/170 (52%), Gaps = 2/170 (1%)

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           I+  CA   +L  GK  H  ++ +G ++ L  SN +++MY+KC  +  A+ +F  M  + 
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           +VSW ++I    Q+G+  E L L  +M   G   +E T   ++ AC+    + + + L  
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDLLLQMQREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
             I+   +  ++   T LLD+ ++ G + +A  + ++MP +    TW+++
Sbjct: 190 FAIKA-AMDLNVFVATALLDVYAKCGLMKDAVCVFESMP-DRSVVTWSSM 237


>gi|79329389|ref|NP_001031987.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171830|sp|Q9FND7.1|PP410_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g40405
 gi|10178152|dbj|BAB11597.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007161|gb|AED94544.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/592 (35%), Positives = 344/592 (58%), Gaps = 4/592 (0%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCD--LVQYAHHLLEEMPQRDHVSWASILTAY 79
           V+ +HA++   G  +   L    + A    D   + YA+ +L+   +    +  S++ A+
Sbjct: 22  VRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSMIRAH 81

Query: 80  NQANLPQKTISIFSTMLAL-DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
            ++ +P+K+   +  +L+  + L+PD++    LV+AC  L     G QVH   +   F +
Sbjct: 82  CKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDN 141

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  V++ L+ +YA+ G  ++   VF+SI   + V  TAM++A AR G    A ++FE  P
Sbjct: 142 DPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMP 201

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            R+   W A++SG  Q     +A   F  M+ EGV  V+ + + S++ AC     L+ G+
Sbjct: 202 ERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVK-VNGVAMISVLSACTQLGALDQGR 260

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
             H  +     +  + ++  +VD+YAKC D+  A ++F  M  K+V +W+S + G A +G
Sbjct: 261 WAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNG 320

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
             E+ L L+  M   GV PN VTFV ++  CS VG V +G++ F SM  ++GI P L+HY
Sbjct: 321 FGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHY 380

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
            CL+DL +R+G L++A ++I+ MP +P    W++LL A + ++N E+G   +  +L L+ 
Sbjct: 381 GCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELET 440

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
            +  +Y+LLSN+YA +  W +VS VR+ M    V+K+PG S +E     H F+ G+ SHP
Sbjct: 441 ANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHP 500

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
              +I  +  ++   ++  GY  DT+ V+ D++++EKE  L  HSE+ A+A+G++     
Sbjct: 501 KYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKED 560

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             +R+VKNLRVCGDCH V  MIS+I  REI+VRD  R+HHFKDG CSCN FW
Sbjct: 561 VPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSCNGFW 612


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/591 (35%), Positives = 342/591 (57%), Gaps = 35/591 (5%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLID-AYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           ++ +HA+II  GL +   L   L+  AY     + Y   L   +P+ D   + S++T  +
Sbjct: 35  LQQIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLITLTS 94

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           + + PQ+++  +  ML L  +   ++ F++++K+   L A  +G+ +H    +  +  D 
Sbjct: 95  KFSFPQESLLCYRRML-LANISSSNYTFSAVIKSSADLTAFSIGETIHCHVYICGYGLDA 153

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V+++LV  YAK                               SG    A ++F++ P +
Sbjct: 154 YVQAALVSFYAK-------------------------------SGHVMIARKVFDKMPEK 182

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
            +  W +++SG  Q+    +A   F  M+  GV   D     S++ ACA    + LG  +
Sbjct: 183 TVVAWNSMISGYEQNGFGKEAVELFFLMQDLGVK-PDSSTFVSLLSACAQVGAIGLGFWV 241

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H  +    ++  + +  A+++MY++C ++  A+++F  M  K++V+WT++I G   HG  
Sbjct: 242 HEYIARNCFDLNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHG 301

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
            + + L++EM   G +PN VTFV ++ AC+H GLV +GR++F +M ++YG+ PS++H  C
Sbjct: 302 SQAIELFNEMSFDGPRPNNVTFVAVLSACAHAGLVDEGRQIFTTMKQEYGLVPSVEHQVC 361

Query: 381 LLDLLSRSGHLDEAENLIK-AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           ++D+L R+GHL+EA   IK   P EP    W A+L ACK H+N ++G  VA HLLS++PE
Sbjct: 362 MVDMLGRAGHLNEAYQFIKNTSPKEPAPAVWTAMLGACKMHKNFDLGVEVAEHLLSIEPE 421

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           +P  Y++LSN+YA A     V K+R +M    +KKE GYS I+     ++F  G+ SHP 
Sbjct: 422 NPGHYVMLSNIYALAGRMDRVEKIRNIMIRNRLKKEVGYSTIDVDHKVYLFSMGDKSHPK 481

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
            ++I+  L EL +  +  GY+P + SV+H++E++E+E  L +HSE+LA+A+GLLK+  G 
Sbjct: 482 TNQIYLYLDELMSRCREAGYIPASESVMHEVEEEEREYALRYHSEKLAIAFGLLKTGSGV 541

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +R+VKNLR+C DCH  +K IS I  REI VRD  R+HHFKDG CSC D+W
Sbjct: 542 AIRIVKNLRMCEDCHTAIKYISIIANREINVRDRLRFHHFKDGSCSCQDYW 592


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/590 (36%), Positives = 342/590 (57%), Gaps = 40/590 (6%)

Query: 26  HAQIIKLGL--HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYN 80
           H  + K GL  HQY  + + L+  Y +C  V+ A  +L+ +P     D  S+ S+L A  
Sbjct: 140 HGLLFKFGLVCHQY--VKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALV 197

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           ++   ++ + +   M+  + +  DH  +  ++  C  +   +LG +VHA  +      D+
Sbjct: 198 ESGRGEEAVEVLRRMVD-ECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDE 256

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V S L+DMY KCG   NAR VFD   L+N                             R
Sbjct: 257 FVGSMLIDMYGKCGEVLNARNVFDG--LQN-----------------------------R 285

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           N+ +WTAL++  +Q+    ++   F  M REG  + +    + ++ ACA  A L  G  +
Sbjct: 286 NVVVWTALMTAYLQNGYFEESLNLFTCMDREGT-LPNEYTFAVLLNACAGIAALRHGDLL 344

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H  V  LG+++ + + NA+++MY+K   I ++ ++F  M  +D+++W ++I G + HG  
Sbjct: 345 HARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLG 404

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           ++ L ++ +MVSA   PN VTF+G++ A SH+GLV +G      ++ ++ I P L+HYTC
Sbjct: 405 KQALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTC 464

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++ LLSR+G LDEAEN +K    + D   W  LL+AC  HRN ++G R+A  +L + P D
Sbjct: 465 MVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHD 524

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
             +Y LLSN+YA A  W  V  +RKLM    +KKEPG S+++     H+F +  ++HP  
Sbjct: 525 VGTYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRNDIHVFLSEGSNHPES 584

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
            +I++ + +L A +K  GYVP+ +SVLHD+E ++KE  L +HSE+LA+AYGL+K      
Sbjct: 585 IQIYKKVQQLLALIKPLGYVPNIASVLHDVEDEQKEGYLSYHSEKLALAYGLMKIPSPAP 644

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +R++KNLR+C DCH  +K+IS++T R I+VRDA R+HHF+DG C+C D W
Sbjct: 645 IRIIKNLRMCDDCHTAVKLISKVTNRLIIVRDANRFHHFRDGSCTCLDHW 694



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 119/466 (25%), Positives = 218/466 (46%), Gaps = 50/466 (10%)

Query: 23  KTLHAQII---KLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           K +HAQ +   +   H +    N+L+  Y KC  +  A +L + MP R+ VSW  ++  Y
Sbjct: 32  KAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGY 91

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
                  + + +F  M++L    P+ +VF + + AC   G  + G Q H           
Sbjct: 92  LHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCH 151

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSI---KLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             VKS+LV MY++C     A  V D++    + +  S+ ++L+A   SGR ++A+E+   
Sbjct: 152 QYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVL-- 209

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
                              R  +D   ++           D +    ++G CA    L+L
Sbjct: 210 -------------------RRMVDECVAW-----------DHVTYVGVMGLCAQIRDLQL 239

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           G ++H  ++  G     F+ + ++DMY KC +++ A+++F  ++ ++VV WT+++    Q
Sbjct: 240 GLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQ 299

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           +G  EE+L L+  M   G  PNE TF  L+ AC+ +  +  G  L  + +E  G    + 
Sbjct: 300 NGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHG-DLLHARVEKLGFKNHVI 358

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
               L+++ S+SG +D + N+   M +  D  TW A++    HH   +   +V   ++S 
Sbjct: 359 VRNALINMYSKSGSIDSSYNVFTDMIYR-DIITWNAMICGYSHHGLGKQALQVFQDMVS- 416

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRK----LMSVM-EVKKEPG 477
             E+  +Y+    V ++   + H+  V++    L  +M   K EPG
Sbjct: 417 -AEECPNYVTFIGVLSA---YSHLGLVKEGFYYLNHLMRNFKIEPG 458



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 103/179 (57%), Gaps = 4/179 (2%)

Query: 17  QIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASIL 76
           Q+ L V   HA++++ GL     + + LID YGKC  V  A ++ + +  R+ V W +++
Sbjct: 238 QLGLRV---HARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALM 294

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
           TAY Q    ++++++F+ M     L P+ + FA L+ AC  + A R G  +HA      F
Sbjct: 295 TAYLQNGYFEESLNLFTCMDREGTL-PNEYTFAVLLNACAGIAALRHGDLLHARVEKLGF 353

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
            +  +V+++L++MY+K G  +++  VF  +  ++ ++W AM+  Y+  G  K A+++F+
Sbjct: 354 KNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQ 412



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 98/227 (43%), Gaps = 40/227 (17%)

Query: 248 CANFAVLELGKQIHG-LVIALGYESCLFIS--NAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           CA+   L  GK +H   +I     +   IS  N++V +Y KC  +  A+++F  M  ++V
Sbjct: 22  CADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNV 81

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRK--- 360
           VSW  ++ G    G   E L L+  MVS     PNE  F   + ACSH G V +G +   
Sbjct: 82  VSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHG 141

Query: 361 -LFK-SMIEDYGITPSLQH----------------------------YTCLLDLLSRSGH 390
            LFK  ++    +  +L H                            Y  +L+ L  SG 
Sbjct: 142 LLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGR 201

Query: 391 LDEAENLIKAMPFEP---DEPTWAALLSACKHHRNTEMGTRVANHLL 434
            +EA  +++ M  E    D  T+  ++  C   R+ ++G RV   LL
Sbjct: 202 GEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLL 248



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 82/161 (50%), Gaps = 9/161 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LHA++ KLG   +  + N LI+ Y K   +  ++++  +M  RD ++W +++  Y+   L
Sbjct: 344 LHARVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGL 403

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----KQVHACFVLSPFCDDD 140
            ++ + +F  M++ ++  P++  F  ++ A   LG  + G      +   F + P  +  
Sbjct: 404 GKQALQVFQDMVSAEEC-PNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEH- 461

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
              + +V + ++ GL + A     + ++K + V+W  +L+A
Sbjct: 462 --YTCMVALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNA 500


>gi|357112489|ref|XP_003558041.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 706

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 224/613 (36%), Positives = 339/613 (55%), Gaps = 54/613 (8%)

Query: 39  PLP------NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIF 92
           PLP       +L+  Y +  L+  A  L  +MP+R+HV++  +L  +  A    +   +F
Sbjct: 107 PLPPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLF 166

Query: 93  STMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYA 151
             M       PD  V A      G   A R+  +  A F   P    +VV  ++++  YA
Sbjct: 167 DEM-------PDKDVVARTAMLSGYCQAGRI-TEARALFDEMP--KRNVVSWTAMISGYA 216

Query: 152 KCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP------------- 198
           + G    AR +F+ +  +N VSWTAML  Y ++G  +DA ++F   P             
Sbjct: 217 QNGKVILARKLFEVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVG 276

Query: 199 ------------------VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
                              R+   W+A++    Q+   ++A  +F EM   G+    P  
Sbjct: 277 FGQHGMVDAAKAMFERMCARDDGTWSAMIKVYEQNEFLMEALSTFREMLCRGIR---PNY 333

Query: 241 LS--SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
            S  SI+  CA  A  + G+++H  ++   +++ +F  +A++ MY KC ++  AK +F  
Sbjct: 334 TSFISILTVCAALATADYGRELHAAMLRCSFDTDVFAVSALITMYIKCGNLDKAKRVFNM 393

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
              KDVV W S+I G AQHG  EE L ++D++  A + P+ +T++G++ ACS+ G V +G
Sbjct: 394 FEPKDVVMWNSMITGYAQHGLGEEALGIFDDLRLARMAPDGITYIGVLTACSYTGKVKEG 453

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
           R++F SM  +  I     HY+C++DLL R+G +DEA +LI  MP EPD   W AL+ AC+
Sbjct: 454 REIFNSMGMNSSIRLGAAHYSCMVDLLGRAGLVDEALDLINNMPVEPDAIIWGALMGACR 513

Query: 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGY 478
            H+N E+    A  LL L+P     Y+LLS++Y S   W+  S +RK +S   + K PG 
Sbjct: 514 MHKNAEIAEVAAKKLLELEPGSAGPYVLLSHIYTSTGRWEDASDMRKFISSRNLNKSPGC 573

Query: 479 SYIEFGKGSHIFYAGET-SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKER 537
           S+IE+ K  H+F +G+  SHP    I  +L ELD  +   GY  D S VLHD+++++K +
Sbjct: 574 SWIEYNKMVHLFTSGDVLSHPEHAIILNMLEELDGLLMESGYSADGSFVLHDVDEEQKAQ 633

Query: 538 QLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYH 597
            L +HSER AVAYGLLK   G  +RV+KNLRVCGDCH  +K+I++IT REI++RDA R+H
Sbjct: 634 SLRYHSERQAVAYGLLKVPAGMPIRVMKNLRVCGDCHSAIKLITKITSREIILRDANRFH 693

Query: 598 HFKDGKCSCNDFW 610
           HFKDG CSC D+W
Sbjct: 694 HFKDGLCSCRDYW 706



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 106/407 (26%), Positives = 178/407 (43%), Gaps = 74/407 (18%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N LI  Y +  L   A  L   MP RD  S+ +++      +L + T+   +  LA   L
Sbjct: 52  NALIAGYFRNHLPDAALGLFHRMPSRDLGSYNALIAGL---SLRRHTLPDAAAALASIPL 108

Query: 102 QPDHFVFASLVKACGSLG----ATRLGKQV----HACF--VLSPFCD------------- 138
            P    F SL++     G    A RL  Q+    H  +  +L  F D             
Sbjct: 109 PPSVVSFTSLLRGYVRHGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDE 168

Query: 139 ----DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
               D V +++++  Y + G    ARA+FD +  +N VSWTAM+S YA++G+   A ++F
Sbjct: 169 MPDKDVVARTAMLSGYCQAGRITEARALFDEMPKRNVVSWTAMISGYAQNGKVILARKLF 228

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
           E  P RN   WTA++ G +Q+ +  DA   F  M    V             A  N  ++
Sbjct: 229 EVMPDRNEVSWTAMLVGYIQAGHVEDAEDLFNAMPDHPV-------------AACNAMMV 275

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
             G+  HG+V                          AAK +F RM  +D  +W+++I   
Sbjct: 276 GFGQ--HGMV-------------------------DAAKAMFERMCARDDGTWSAMIKVY 308

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
            Q+    E L+ + EM+  G++PN  +F+ ++  C+ +     GR+L  +M+        
Sbjct: 309 EQNEFLMEALSTFREMLCRGIRPNYTSFISILTVCAALATADYGRELHAAMLR-CSFDTD 367

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEP-DEPTWAALLSACKHH 420
           +   + L+ +  + G+LD+A+ +     FEP D   W ++++    H
Sbjct: 368 VFAVSALITMYIKCGNLDKAKRVFNM--FEPKDVVMWNSMITGYAQH 412



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 132/285 (46%), Gaps = 28/285 (9%)

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           V  ++ +    + G    ARA FD++ L+ + S+ A+++ Y R+     A+ +F + P R
Sbjct: 18  VAANARIAWLVRAGNIEGARAAFDAMPLRTTASYNALIAGYFRNHLPDAALGLFHRMPSR 77

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           +L  + AL++GL   R+ +              D    L    +  +  +F  L  G   
Sbjct: 78  DLGSYNALIAGLSLRRHTLP-------------DAAAALASIPLPPSVVSFTSLLRGYVR 124

Query: 261 HGLV---IALGY---ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
           HGL+   I L +   E        ++  +     +  A+ +F  M  KDVV+ T+++ G 
Sbjct: 125 HGLLADAIRLFHQMPERNHVTYTVLLGGFLDAGRVNEARKLFDEMPDKDVVARTAMLSGY 184

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
            Q G+  E  AL+DEM     K N V++  +I   +  G V   RKLF+ M +   ++  
Sbjct: 185 CQAGRITEARALFDEM----PKRNVVSWTAMISGYAQNGKVILARKLFEVMPDRNEVS-- 238

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
              +T +L    ++GH+++AE+L  AMP  P     A ++   +H
Sbjct: 239 ---WTAMLVGYIQAGHVEDAEDLFNAMPDHPVAACNAMMVGFGQH 280


>gi|225452893|ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340,
           mitochondrial-like [Vitis vinifera]
          Length = 632

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/621 (35%), Positives = 342/621 (55%), Gaps = 18/621 (2%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP---LPNTLIDAYGKCDLVQYAHHLL 61
           HY   LR CAR       + LHA II  G+    P   L N L+  Y  C     A  + 
Sbjct: 15  HYRFLLRSCARESSLDIGERLHATIITTGIAG-APETFLHNALLQFYASCGCAWQARKVF 73

Query: 62  EEMPQ--RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
           +E+P   +D V W +++  + + N+  + + IF  M     ++PD      L   C  LG
Sbjct: 74  DEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCG-VKPDEVTLVCLFGGCARLG 132

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
              +G Q H C V       +   ++++DMYAK GL   AR VF  +K ++ VSWT +L 
Sbjct: 133 DVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTVILD 192

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
              RS   ++   +F++ P RN   WT +++G + S    ++F    EM  +    ++ +
Sbjct: 193 GVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMELNYV 252

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALG-YESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
            L SI+ AC+    L +G+ +H   +     E  + +  A+VDMYAKC  I  A   F +
Sbjct: 253 TLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKFFKK 312

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
           M +++VVSW +++ G A HG     L ++ +M     KP++VTF  ++ ACSH GLV +G
Sbjct: 313 MPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEA-KPDDVTFTSVLSACSHSGLVDQG 371

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
              F ++   YGITP ++HY C++DLL R+G L+EAE L++ MP  P+E    +LL +C 
Sbjct: 372 CFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGSCS 431

Query: 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGY 478
            H   ++G  +   L+ L P++   +ILLSN+YA A      + +R+++    +KK PG 
Sbjct: 432 IHGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVPGM 491

Query: 479 SYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTS--------SVLHDM 530
           S I  G   H F AG+ SHP   E++ +L E+   ++  GY P+T+        S+  D+
Sbjct: 492 SSIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLEDDL 551

Query: 531 -EQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIV 589
            EQ+EKE+ LF HSE+LA+ +GL+ + PG  L + KNLR+C DCH  +K++S+I  REIV
Sbjct: 552 VEQEEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNREIV 611

Query: 590 VRDATRYHHFKDGKCSCNDFW 610
           +RD  R+H FK+G CSC D+W
Sbjct: 612 IRDRNRFHCFKEGSCSCCDYW 632


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/592 (35%), Positives = 324/592 (54%), Gaps = 39/592 (6%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
            +H   +K GL     + N +ID YGK  +++    + + M  RD V+W SI++ + Q  
Sbjct: 191 AMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGG 250

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD--DDV 141
                + +F  M     + PD     SL  A    G    G+ VH C+++    D  D +
Sbjct: 251 QVASAVEMFCGMRD-SGVSPDVLTLLSLASAIAQCGDICGGRSVH-CYMVRRGWDVGDII 308

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
             +++VDMYAK                                 + + A  +F+  PVR+
Sbjct: 309 AGNAIVDMYAKLS-------------------------------KIEAAQRMFDSMPVRD 337

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRR-EGVDIVDPLVLSSIVGACANFAVLELGKQI 260
              W  L++G +Q+    +A + +  M++ EG+  +    +S ++ A ++   L+ G ++
Sbjct: 338 AVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVS-VLPAYSHLGALQQGTRM 396

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H L I  G    +++   ++D+YAKC  +  A  +F +  R+    W ++I G   HG  
Sbjct: 397 HALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHG 456

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
            + L+L+ +M   G+ P+ VTFV L+ ACSH GLV +GR  F  M   YGI P  +HY C
Sbjct: 457 AKALSLFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYAC 516

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++D+  R+G LD+A + I+ MP +PD   W ALL AC+ H N EMG   + +L  L P++
Sbjct: 517 MVDMFGRAGQLDDAFDFIRNMPIKPDSAIWGALLGACRIHGNVEMGKVASQNLFELDPKN 576

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGE--TSHP 498
              Y+L+SN+YA    W  V +VR L+    ++K PG+S IE  +  ++FY+G     HP
Sbjct: 577 VGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQMNIHP 636

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
             +EI   L +L A+++  GYVPD S VL D+E+ EKE+ L  HSERLA+A+G++ + P 
Sbjct: 637 QHEEIQRELLDLLAKIRSLGYVPDYSFVLQDVEEDEKEQILNNHSERLAIAFGIINTPPR 696

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           T L + KNLRVCGDCH   K IS+IT+REI+VRD+ R+HHFKDG CSC DFW
Sbjct: 697 TPLHIYKNLRVCGDCHNATKYISKITEREIIVRDSNRFHHFKDGYCSCGDFW 748



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 115/405 (28%), Positives = 198/405 (48%), Gaps = 42/405 (10%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPN-TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           T   LHA  ++LGL +     +  L+ AY +   V+ A+   +EM  RD  +W ++L+  
Sbjct: 86  TAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGL 145

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            +     + + +F  M+ ++ +  D    +S++  C  LG   L   +H   V     D+
Sbjct: 146 CRNARAAEAVGLFGRMV-MEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDE 204

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             V ++++D+Y K G+    R VFD +  ++ V+W +++S + + G+   A+E+      
Sbjct: 205 LFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEM------ 258

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV--DIVDPLVLSSIVGACANFAVLELG 257
                                    F  MR  GV  D++  L L+S +  C +      G
Sbjct: 259 -------------------------FCGMRDSGVSPDVLTLLSLASAIAQCGDICG---G 290

Query: 258 KQIHGLVIALGYESCLFIS-NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           + +H  ++  G++    I+ NAIVDMYAK S I AA+ +F  M  +D VSW ++I G  Q
Sbjct: 291 RSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQ 350

Query: 317 HGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
           +G A E + +YD M    G+KP + TFV ++ A SH+G + +G ++    I+  G+   +
Sbjct: 351 NGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKT-GLNLDV 409

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
              TC++DL ++ G LDEA  L +  P     P W A++S    H
Sbjct: 410 YVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGP-WNAVISGVGVH 453



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 127/266 (47%), Gaps = 5/266 (1%)

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
           A++ AY R GR +DA   F++   R++  W A++SGL ++    +A   F  M  EGV  
Sbjct: 109 ALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGV-A 167

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
            D + +SS++  C       L   +H   +  G +  LF+ NA++D+Y K   +   + +
Sbjct: 168 GDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKV 227

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
           F  M  +D+V+W SII G  Q GQ    + ++  M  +GV P+ +T + L  A +  G +
Sbjct: 228 FDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDI 287

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
             GR +   M+        +     ++D+ ++   ++ A+ +  +MP   D  +W  L++
Sbjct: 288 CGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVR-DAVSWNTLIT 346

Query: 416 ACKHHRNTEMGTRVANHLL---SLKP 438
               +        V +H+     LKP
Sbjct: 347 GYMQNGLASEAIHVYDHMQKHEGLKP 372


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/601 (34%), Positives = 341/601 (56%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L++CA+ ++ L  K  HAQI+ +GL       N LI+ Y KC  V +A  + +EMP R  
Sbjct: 71  LKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSL 130

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++ +  Q     + + +   M   +      F  +S++ AC +  A    + +HA
Sbjct: 131 VSWNTMIGSLTQNGEENEALDLLLQM-QREGTPFSEFTISSVLCACAAKCALSECQLLHA 189

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
            F +    D +V  +                              TA+L  YA+ G  KD
Sbjct: 190 -FAIKAAMDLNVFVA------------------------------TALLDVYAKCGLMKD 218

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +FE  P R++  W+++ +G VQ+     A   F +    G+   D  ++SS++ ACA
Sbjct: 219 AVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLK-HDQFLMSSVICACA 277

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
             A +  GKQ++ L+   G+ S +F++++++DMYAKC  I  +  +F  + +++VV W +
Sbjct: 278 GLAAMIEGKQMNALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVEKRNVVLWNA 337

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G ++H ++ E + L+++M   G+ PN+VTFV ++ AC H+GLV KG+K F  M +++
Sbjct: 338 MISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLSACGHMGLVRKGQKYFDLMTKEH 397

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            + P++ HY+C++D LSR+G + EA +LI  +PF      W +LL++C+ H N E+    
Sbjct: 398 HLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNASASMWGSLLASCRTHGNLELAEVA 457

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  L  ++P +  +Y+LLSN+YA+   W  V+K+RKL+   +VKKE G S+IE     H+
Sbjct: 458 AKKLFDIEPHNSGNYLLLSNMYAANGKWDEVAKMRKLLKESDVKKERGKSWIEIKDKVHL 517

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F  GE +HP   EI+  L E+  E+++ GY  +T   LH + +  K+  L  HSE+LA  
Sbjct: 518 FMVGERNHPKIVEIYSKLNEVMDELQKLGYKVETQHDLHQVGESIKQELLRHHSEKLAFT 577

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
            GLL   P   +R++KNLR+CGDCH  MK+ S+   R+++VRD  R+HHFK+G CSC DF
Sbjct: 578 MGLLFLPPNAPIRIMKNLRICGDCHSFMKLASKFFCRDVIVRDTNRFHHFKNGCCSCGDF 637

Query: 610 W 610
           W
Sbjct: 638 W 638



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 163/340 (47%), Gaps = 36/340 (10%)

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN 170
           ++K C        GK  HA  +L     D +  + L++MY+KCG  + AR VFD +  ++
Sbjct: 70  ILKLCAKRKLLLQGKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRS 129

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
            VSW  M+ +  ++G + +A+++                                ++M+R
Sbjct: 130 LVSWNTMIGSLTQNGEENEALDL-------------------------------LLQMQR 158

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290
           EG    +   +SS++ ACA    L   + +H   I    +  +F++ A++D+YAKC  + 
Sbjct: 159 EGTPFSE-FTISSVLCACAAKCALSECQLLHAFAIKAAMDLNVFVATALLDVYAKCGLMK 217

Query: 291 AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350
            A  +F  M  + VV+W+S+  G  Q+   E+ LAL+ +    G+K ++     +I AC+
Sbjct: 218 DAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKAWETGLKHDQFLMSSVICACA 277

Query: 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTW 410
            +  + +G+++  +++   G   ++   + L+D+ ++ G ++E+  + + +  + +   W
Sbjct: 278 GLAAMIEGKQM-NALLSKSGFCSNIFVASSLIDMYAKCGGIEESYKVFRDVE-KRNVVLW 335

Query: 411 AALLSA-CKHHRNTEMGTRVAN-HLLSLKPEDPSSYILLS 448
            A++S   +H R+ E+         + L P D +   +LS
Sbjct: 336 NAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSVLS 375


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 211/601 (35%), Positives = 337/601 (56%), Gaps = 2/601 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CA+ +     K +   + +LG+     + N L+D Y KC  +     + +E   ++ 
Sbjct: 230 ISACAKLKDLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNL 289

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V + +I++ Y Q  L  + + +   ML   + +PD     S + AC  LG   +GK  HA
Sbjct: 290 VMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQ-RPDKVTMLSTIAACAQLGDLSVGKSSHA 348

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               +     D + ++++DMY KCG    A  VFDS+  K  V+W ++++   R G  + 
Sbjct: 349 YVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELEL 408

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ IF + P  NL  W  ++  +VQ+    +A     EM+ +G+   D + +  I  AC 
Sbjct: 409 ALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIK-GDRVTMVGIASACG 467

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               L+L K I+  +        + +  A+VDM+++C D + A  +F  M ++DV +WT+
Sbjct: 468 YLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRVFENMEKRDVSAWTA 527

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
            I   A  G A+  + L+DEM+   VK ++  FV L+ A SH G V +GR+LF +M + +
Sbjct: 528 AIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYVDQGRQLFWAMEKIH 587

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G++P + HY C++DLL R+G L+EA +L+K+MP +P++  W + L+AC+ H+N E     
Sbjct: 588 GVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLAACRKHKNVEFANYA 647

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
              +  L PE    ++LLSN+YASA  W  V++VR  M     +K  G S IE       
Sbjct: 648 DEKITQLAPEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQKVAGSSSIEVHGLIRE 707

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F +G+ SH    +I  +L E++  + + GYVPDT++VL D++++EKE  L  HSE+LA+A
Sbjct: 708 FTSGDESHTENAQIGLMLQEINCRISQVGYVPDTTNVLVDVDEQEKEHLLSRHSEKLAMA 767

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           YGL+ +  G  +RVVKNLR+C DCH   K++S++  REI VRD  RYH FK+G CSC DF
Sbjct: 768 YGLINTGKGIPIRVVKNLRMCSDCHSFAKLVSKLYGREITVRDNNRYHFFKEGFCSCRDF 827

Query: 610 W 610
           W
Sbjct: 828 W 828



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 188/412 (45%), Gaps = 37/412 (8%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL--EEMPQRDHVSWASILT 77
           + +K LH  ++K G+     L    +   G  + + YA +    +E  +    +  +++ 
Sbjct: 36  IELKQLHCNMLKKGVFNINKLIAACVQ-MGTHESLNYALNAFKEDEGTKCSLYTCNTLIR 94

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
            Y  + L ++ I I+  M+ +  + PD+F F  L+ AC  + A   G QVH   V     
Sbjct: 95  GYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGVVVKMGLV 154

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D  V +SL+  YA CG  +  R VFD                           E+ E  
Sbjct: 155 KDLFVANSLIHFYAACGKVDLGRKVFD---------------------------EMLE-- 185

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
             RN+  WT+L++G        +A   F EM   GV+  +P+ +   + ACA    LELG
Sbjct: 186 --RNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVGVE-PNPVTMVCAISACAKLKDLELG 242

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           K++  L+  LG +S   + NA++DMY KC D+ A ++IF     K++V + +I+    QH
Sbjct: 243 KKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQH 302

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G A E L + DEM+  G +P++VT +  I AC+ +G +  G+     +  + G+      
Sbjct: 303 GLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRN-GLERLDNI 361

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
              ++D+  + G  + A  +  +M       TW +L++        E+  R+
Sbjct: 362 SNAIIDMYMKCGKREAACKVFDSMS-NKTVVTWNSLIAGLVRDGELELALRI 412



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 36/241 (14%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL------------- 53
           L  +  CA+       K+ HA + + GL +   + N +ID Y KC               
Sbjct: 328 LSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSN 387

Query: 54  ------------------VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTM 95
                             ++ A  +  EMP+ + VSW +++ A  QA++ ++ I +   M
Sbjct: 388 KTVVTWNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREM 447

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
                ++ D      +  ACG LGA  L K ++     +    D  + ++LVDM+++CG 
Sbjct: 448 QN-QGIKGDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGD 506

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL----FLWTALVSG 211
           P NA  VF++++ ++  +WTA +   A  G  K A+E+F++   +++    F++ AL++ 
Sbjct: 507 PLNAMRVFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTA 566

Query: 212 L 212
            
Sbjct: 567 F 567


>gi|302800114|ref|XP_002981815.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
 gi|300150647|gb|EFJ17297.1| hypothetical protein SELMODRAFT_114918 [Selaginella moellendorffii]
          Length = 637

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/590 (35%), Positives = 325/590 (55%), Gaps = 35/590 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +++   I+  G+ +   +   L+  YGK      A  +   M  RD V+W++++ AY + 
Sbjct: 81  RSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARN 140

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P++ + +F  M  LD + P+     S + AC SLG  R G  +H            VV
Sbjct: 141 GHPREALGLFRQM-DLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVV 199

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LV++Y KC                               GR + A+E F Q   +N+
Sbjct: 200 GTALVNLYGKC-------------------------------GRIEAAVEAFGQIVEKNV 228

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH- 261
             W+A+ +   ++    DA      M  EG+ + +     S++ ACA  A L+ G++IH 
Sbjct: 229 VAWSAISAAYARNDRNRDAIRVLHRMDLEGL-VPNSTTFVSVLDACAAIAALKQGRRIHE 287

Query: 262 -GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
              V+  G ES +++  A+V+MY+KC ++  A D+F ++   D+V W S+I   AQHGQ 
Sbjct: 288 RTQVLGGGLESDVYVLTALVNMYSKCGNLALAGDMFDKIAHLDLVLWNSLIATNAQHGQT 347

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           E+ L L++ M   G++P  +TF  +++ACSH G++ +GRK F S I D+GI P  +H+ C
Sbjct: 348 EKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGC 407

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DLL R+G + ++E+L+  MPFEP    W A L AC+ +RN +     A +L  L P  
Sbjct: 408 MVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDRAIWAAENLFQLDPRK 467

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
            + Y+LLSN+YA A  W  V+++R+ M +    KE G S+IE     H F +G+  HP  
Sbjct: 468 RAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRI 527

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
            EI   L  L   MK  GYVPDT  VLHD++Q+ KE  + +HSE+LA+A+ LL +  G+ 
Sbjct: 528 GEIHAELQRLTKLMKEAGYVPDTEMVLHDVKQEVKEIMVGYHSEKLAMAFALLTTPEGSP 587

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +RVVKNLRVC DCH   K IS++  REIVVRD  R+H F++G CSC D+W
Sbjct: 588 IRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 637



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 138/280 (49%), Gaps = 4/280 (1%)

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
           MLSAY++ G      + F++ PV ++  W AL++  + +R+    +  F  M  +G++  
Sbjct: 1   MLSAYSQIGNIPAVRKAFDEMPVADIVSWNALIAAYIGNRDFDRCWLFFRGMLLQGIN-P 59

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
             + +S  + AC +   + +G+ I   ++  G E    +  A+V MY K      A  +F
Sbjct: 60  GEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSMYGKLGHCTDAASVF 119

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
            RM  +DVV+W++++   A++G   E L L+ +M   GV PN+VT V  + AC+ +G + 
Sbjct: 120 LRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLDACASLGDLR 179

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G  L    +E  GI   +   T L++L  + G ++ A      +  E +   W+A+ +A
Sbjct: 180 SG-ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAVEAFGQI-VEKNVVAWSAISAA 237

Query: 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
              +       RV  H + L+   P+S   +S + A AA+
Sbjct: 238 YARNDRNRDAIRVL-HRMDLEGLVPNSTTFVSVLDACAAI 276


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/609 (34%), Positives = 343/609 (56%), Gaps = 25/609 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIK---LGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP- 65
           L  C++ ++    + +HA ++K   L  + +  + + L+D Y   + V  A  + + +P 
Sbjct: 278 LPACSQLEMLSLGREMHAYVLKDSDLAANSF--VASALVDMYASHERVGVARRVFDMVPG 335

Query: 66  -QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
             R    W +++  Y QA + ++ + +F+ M A   + P     A ++ AC     T  G
Sbjct: 336 GHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACAR-SETFAG 394

Query: 125 KQ-VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           K+ VH   +     D+  V+++L+D+YA+ G    AR +F +I+ ++ VSW  +++    
Sbjct: 395 KEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVV 454

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            G   DA ++  +   +  F       G+  +  E                + + + L +
Sbjct: 455 QGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEE--------------PVVPNNVTLMT 500

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++  CA  A    GK+IHG  +    +S + + +A+VDMYAKC  +  ++ +F R+ +++
Sbjct: 501 LLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRN 560

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMV-SAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           V++W  +I+    HG  +E +AL+D MV S   KPNEVTF+  + ACSH G+V +G +LF
Sbjct: 561 VITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELF 620

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPTWAALLSACKHHR 421
            SM  ++G+ P+   + C +D+L R+G LDEA ++I +M P E     W++ L AC+ HR
Sbjct: 621 HSMKRNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHR 680

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           N  +G   A  L  L+P++ S Y+LL N+Y++A +W+  S+VR  M    V KEPG S+I
Sbjct: 681 NVPLGEIAAERLFQLEPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWI 740

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E     H F AGE++HP    +   +  L   M+ +GY PDTSSVLHD+E+ EK   L +
Sbjct: 741 ELDGVIHRFMAGESAHPESTLVHAHMDALWERMRNQGYTPDTSSVLHDIEESEKAAILRY 800

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSE+LA+A+GLL++ PG  +RV KNLRVC DCH   K ISR+  REIV+RD  R+HHF D
Sbjct: 801 HSEKLAIAFGLLRTPPGATIRVAKNLRVCNDCHEAAKFISRMVGREIVLRDVRRFHHFVD 860

Query: 602 GKCSCNDFW 610
           G CSC D+W
Sbjct: 861 GACSCGDYW 869



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 110/415 (26%), Positives = 192/415 (46%), Gaps = 55/415 (13%)

Query: 20  LTVKTLHAQIIKLGL-HQYGP-LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILT 77
           + V+++H   ++  L H + P + N L+ AY +C  +  A  L   MP RD V++ S++ 
Sbjct: 76  IAVRSIHGAALRRDLLHGFTPAVANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIA 135

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT-RLGKQVHACFVLSPF 136
           A          +     ML L+      F   S++ AC  L    RLG++ HA  + + F
Sbjct: 136 ALCLFRRWLPALDALRDML-LEGHPLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGF 194

Query: 137 CDDD--VVKSSLVDMYAKCGLPNNARAVFDSIKLKNS-----VSWTAMLSAYARSGRKKD 189
            D D     ++L+ MYA+ GL ++A+ +F S+   +S     V+W  M+S   +SGR  +
Sbjct: 195 LDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGE 254

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+E+      R +                          R +G+        +S + AC+
Sbjct: 255 AIEVIYDMVARGV--------------------------RPDGI------TFASALPACS 282

Query: 250 NFAVLELGKQIHGLVIA---LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM--RRKDV 304
              +L LG+++H  V+    L   S  F+++A+VDMYA    +  A+ +F  +    + +
Sbjct: 283 QLEMLSLGREMHAYVLKDSDLAANS--FVASALVDMYASHERVGVARRVFDMVPGGHRQL 340

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
             W +++ G AQ G  EE L L+  M   AGV P+E T  G++ AC+       G++   
Sbjct: 341 GLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFA-GKEAVH 399

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP-DEPTWAALLSAC 417
             +   G+  +      L+DL +R G ++ A  +  A+  EP D  +W  L++ C
Sbjct: 400 GYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAI--EPRDVVSWNTLITGC 452


>gi|218546768|sp|Q8S9M4.2|PP198_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g41080
          Length = 650

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/570 (37%), Positives = 311/570 (54%), Gaps = 34/570 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N LI+ Y +   +  A  + +EMP R   +W +++    Q    ++ +S+F  M  L   
Sbjct: 114 NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLG-F 172

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            PD +   S+      L +  +G+Q+H   +      D VV SSL  MY           
Sbjct: 173 SPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYM---------- 222

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
                                R+G+ +D   +    PVRNL  W  L+ G  Q+      
Sbjct: 223 ---------------------RNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETV 261

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
            Y +  M+  G    + +   +++ +C++ A+   G+QIH   I +G  S + + ++++ 
Sbjct: 262 LYLYKMMKISGCR-PNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLIS 320

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV-SAGVKPNEV 340
           MY+KC  +  A   F     +D V W+S+I     HGQ +E + L++ M     ++ NEV
Sbjct: 321 MYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEV 380

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
            F+ L+YACSH GL  KG +LF  M+E YG  P L+HYTC++DLL R+G LD+AE +I++
Sbjct: 381 AFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRS 440

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           MP + D   W  LLSAC  H+N EM  RV   +L + P D + Y+LL+NV+ASA  W+ V
Sbjct: 441 MPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDV 500

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
           S+VRK M    VKKE G S+ E     H F  G+ S     EI+  L EL  EMK +GY 
Sbjct: 501 SEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYK 560

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           PDT+SVLHDM+++EKE  L  HSE+LAVA+ L+    G  +R++KNLRVC DCH+  K I
Sbjct: 561 PDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYI 620

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           S I  REI +RD +R+HHF +GKCSC D+W
Sbjct: 621 SVIKNREITLRDGSRFHHFINGKCSCGDYW 650



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 179/348 (51%), Gaps = 3/348 (0%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
           +F   +++C +  +   GKQ+H   V+S F  D  + + L+ MY+K G   +A AV+  +
Sbjct: 46  LFTPFIQSCTTRQSLPSGKQLHCLLVVSGFSSDKFICNHLMSMYSKLGDFPSAVAVYGRM 105

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
           + KN +S   +++ Y R+G   +A ++F++ P R L  W A+++GL+Q     +    F 
Sbjct: 106 RKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFR 165

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           EM   G    D   L S+    A    + +G+QIHG  I  G E  L +++++  MY + 
Sbjct: 166 EMHGLGFS-PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYMRN 224

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             +   + +   M  +++V+W ++I+G AQ+G  E  L LY  M  +G +PN++TFV ++
Sbjct: 225 GKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYKMMKISGCRPNKITFVTVL 284

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            +CS + + G+G+++    I+  G +  +   + L+ + S+ G L +A         E D
Sbjct: 285 SSCSDLAIRGQGQQIHAEAIK-IGASSVVAVVSSLISMYSKCGCLGDAAKAFSEREDE-D 342

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454
           E  W++++SA   H   +    + N +      + +    L+ +YA +
Sbjct: 343 EVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLNLLYACS 390


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 221/592 (37%), Positives = 322/592 (54%), Gaps = 39/592 (6%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
            +H   +K GL +   + N LID YGK  +++ A  +   M  RD V+W SI++   Q  
Sbjct: 190 VMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRG 249

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD-DDVV 142
                + +F  M     + PD     SL  A    G  R  K +H C+V+    D DD++
Sbjct: 250 QTAAALKMFQGMRG-SGVSPDVLTLVSLASAIAQGGDGRSAKSLH-CYVMRRGWDVDDII 307

Query: 143 K-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
             +++VDMYAK    +N  A                            A  +F+  PV++
Sbjct: 308 AGNAIVDMYAKL---SNIEA----------------------------AQRMFDSMPVQD 336

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRR-EGVDIVDPLVLSSIVGACANFAVLELGKQI 260
              W  L++G +Q+    +A   +  M++ EG+  +    +S ++ A ++   L+ G ++
Sbjct: 337 SVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVS-VLPAYSHLGALQQGMRM 395

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H L I +G    +++   ++D+YAKC  +  A  +F +M R+    W +II G   HG  
Sbjct: 396 HALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHG 455

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
            E L L+  M   G+KP+ VTFV L+ ACSH GLV +GR  F  M   Y I P  +HY C
Sbjct: 456 AEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYAC 515

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           + D+L R+G LDEA N I+ MP +PD   W ALL AC+ H N EMG   + +L  L PE+
Sbjct: 516 MADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPEN 575

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETS--HP 498
              Y+L+SN+YA    W  V +VR L+    ++K PG+S IE  +  ++FY+G  +  HP
Sbjct: 576 VGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVKRSVNVFYSGNQTEPHP 635

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
             +EI   L  L A+++  GYV D S VL D+E  EKE  L  HSERLA+A+G++ +   
Sbjct: 636 QHEEIQAELRSLLAKIRSVGYVSDYSFVLQDVEDDEKEHILNNHSERLAIAFGIINTPSR 695

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           T L + KNLRVCGDCH   K IS+IT+REI+VRD+ R+HHFKDG CSC DFW
Sbjct: 696 TPLHIYKNLRVCGDCHNATKYISQITEREIIVRDSNRFHHFKDGHCSCGDFW 747



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 214/457 (46%), Gaps = 44/457 (9%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPN-TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           +   LHA  ++LGL +     + +L+ AY +   +  A+ + +EM +RD  +W ++L+  
Sbjct: 85  SAAQLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGL 144

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            +     + + +F  M+  + +  D    +S++  C  LG   L   +H   V      +
Sbjct: 145 CRNARAAEAVGLFGRMVG-EGVAGDTVTVSSVLPMCVLLGDQVLALVMHVYAVKHGLDKE 203

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             V ++L+D+Y K G+   A+ VF  ++ ++ V+W +++S   + G+   A+++F+    
Sbjct: 204 LFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQG--- 260

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                       MR  GV   D L L S+  A A        K 
Sbjct: 261 ----------------------------MRGSGVS-PDVLTLVSLASAIAQGGDGRSAKS 291

Query: 260 IHGLVIALGYE-SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           +H  V+  G++   +   NAIVDMYAK S+I AA+ +F  M  +D VSW ++I G  Q+G
Sbjct: 292 LHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNG 351

Query: 319 QAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
            A E +  Y  M    G+K  + TFV ++ A SH+G + +G ++    I+  G+   +  
Sbjct: 352 LANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGALQQGMRMHALSIK-IGLNVDVYV 410

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--S 435
            TCL+DL ++ G L EA  L + MP     P W A++S    H +      + + +    
Sbjct: 411 GTCLIDLYAKCGKLAEAMLLFEKMPRRSTGP-WNAIISGLGVHGHGAEALTLFSRMQQEG 469

Query: 436 LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
           +KP+    ++   ++ A+ +    V + R    VM+V
Sbjct: 470 IKPD----HVTFVSLLAACSHAGLVDQGRSFFDVMQV 502



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 161/344 (46%), Gaps = 36/344 (10%)

Query: 74  SILTAYNQANLPQKTISIFSTMLALD-KLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
           +++ A+++A LP+    +   +L+     +PD F F SL++A  S  +     Q+HAC +
Sbjct: 38  TLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNASA---AQLHACAL 94

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
                              + GL   +  VF S          +++ AY R GR  +A +
Sbjct: 95  -------------------RLGLVRPS--VFTS---------GSLVHAYLRFGRISEAYK 124

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F++   R++  W A++SGL ++    +A   F  M  EGV   D + +SS++  C    
Sbjct: 125 VFDEMSERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGV-AGDTVTVSSVLPMCVLLG 183

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
              L   +H   +  G +  LF+ NA++D+Y K   +  A+ +F  M  +D+V+W SII 
Sbjct: 184 DQVLALVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIIS 243

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G  Q GQ    L ++  M  +GV P+ +T V L  A +  G     + L   ++      
Sbjct: 244 GCEQRGQTAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDV 303

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             +     ++D+ ++  +++ A+ +  +MP + D  +W  L++ 
Sbjct: 304 DDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQ-DSVSWNTLITG 346


>gi|62318827|dbj|BAD93880.1| hypothetical protein [Arabidopsis thaliana]
 gi|62318835|dbj|BAD93890.1| hypothetical protein [Arabidopsis thaliana]
          Length = 635

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 217/621 (34%), Positives = 339/621 (54%), Gaps = 36/621 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLI--DAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +H   IK G+         LI   A    D + YA  LL   P+ D   + +++  Y+++
Sbjct: 16  IHGLFIKYGVDTDSYFTGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYSES 75

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           + P  ++++F  M+    + PD F FA ++KA  +  + R G Q+H   +         V
Sbjct: 76  DEPHNSVAVFVEMMRKGFVFPDSFSFAFVIKAVENFRSLRTGFQMHCQALKHGLESHLFV 135

Query: 143 KSSLVDMYAKCGL-------------PN------------------NARAVFDSIKLKNS 171
            ++L+ MY  CG              PN                   AR +FD + ++N 
Sbjct: 136 GTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFRGNDVAGAREIFDKMLVRNH 195

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
            SW  ML+ Y ++G  + A  IF + P R+   W+ ++ G+  + +  ++F  F E++R 
Sbjct: 196 TSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRA 255

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
           G+   + + L+ ++ AC+     E GK +HG V   GY   + ++NA++DMY++C ++  
Sbjct: 256 GMS-PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPM 314

Query: 292 AKDIFGRMRRKD-VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350
           A+ +F  M+ K  +VSWTS+I G A HGQ EE + L++EM + GV P+ ++F+ L++ACS
Sbjct: 315 ARLVFEGMQEKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACS 374

Query: 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTW 410
           H GL+ +G   F  M   Y I P ++HY C++DL  RSG L +A + I  MP  P    W
Sbjct: 375 HAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVW 434

Query: 411 AALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470
             LL AC  H N E+  +V   L  L P +    +LLSN YA+A  W+ V+ +RK M V 
Sbjct: 435 RTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQ 494

Query: 471 EVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK-RRGYVPDTSSVLHD 529
            +KK   +S +E GK  + F AGE    +  E  E L E+   +K   GY P+ +S L+D
Sbjct: 495 RIKKTTAWSLVEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALYD 554

Query: 530 MEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIV 589
           +E++EKE Q+  HSE+LA+A+ L +   G  +R+VKNLR+C DCH VMK+ S++   EI+
Sbjct: 555 VEEEEKEDQVSKHSEKLALAFALARLSKGANIRIVKNLRICRDCHAVMKLTSKVYGVEIL 614

Query: 590 VRDATRYHHFKDGKCSCNDFW 610
           VRD  R+H FKDG CSC D+W
Sbjct: 615 VRDRNRFHSFKDGSCSCRDYW 635



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 14/184 (7%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ-RDHVSWASILTAYNQ 81
           K LH  + K G      + N LID Y +C  V  A  + E M + R  VSW S++     
Sbjct: 281 KILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRCIVSWTSMIAGLAM 340

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK----QVHACFVLSPFC 137
               ++ + +F+ M A   + PD   F SL+ AC   G    G+    ++   + + P  
Sbjct: 341 HGQGEEAVRLFNEMTAYG-VTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEI 399

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           +       +VD+Y + G    A      + +   ++ W  +L A +  G     +E+ EQ
Sbjct: 400 EH---YGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSHGN----IELAEQ 452

Query: 197 APVR 200
              R
Sbjct: 453 VKQR 456


>gi|225453758|ref|XP_002270092.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 687

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/606 (35%), Positives = 334/606 (55%), Gaps = 41/606 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CAR       +  H +++K G      + N LI  Y  C     A  + +E   RD 
Sbjct: 118 LAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDV 177

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W  ++ A+    L +K   +   M  LD L+PD     SLV AC  LG    GK +H+
Sbjct: 178 VTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERGKFLHS 237

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                   ++  V ++++DMY KC    +A+ VF+ I                   R+KD
Sbjct: 238 YSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRI-------------------REKD 278

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            +             WT+++SGL +S    +A   F +M+   +++ D + L  ++ ACA
Sbjct: 279 VLS------------WTSMLSGLAKSGYFQEALALFQKMQLNKIEL-DEITLVGVLSACA 325

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               L+ GK IH L+        L +  A+VDMYAKC  I  A  +F RMR ++V +W +
Sbjct: 326 QTGALDQGKYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVRNVFTWNA 385

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G A HG  E+ ++L+D+M    + P++VTF+ L+ ACSH GLV +G  +F++M   +
Sbjct: 386 LIGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALLCACSHAGLVDEGLAMFQAMKNKF 445

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            I P ++HY C++DLL R+  +D+A   I+ MP + +   WA LL AC+   + ++  ++
Sbjct: 446 QIEPRMEHYGCVVDLLCRARKVDDALAFIENMPIKANSVLWATLLGACRSGGHFDLAEKI 505

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
              ++ L+P+    Y++LSN+YA  + W H  K+RK M    ++K PG S+IE     H 
Sbjct: 506 GRRVIELEPDSCGRYVMLSNLYAGVSQWDHALKLRKQMKNKGIEKTPGCSWIELNGMIHQ 565

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRR-----GYVPDTSSVLHDMEQKEKERQLFWHSE 544
           F AG+ SH   ++I+ ++     EM RR     G+VP T++VL D+E++EKE  LF HSE
Sbjct: 566 FVAGDRSHLQTEQIYAMIE----EMTRRVNLDGGHVPGTANVLFDIEEEEKEHSLFLHSE 621

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           +LA+A GL+ +  G+ +R+VKNLRVC DCH  +K+ S++  REIV RD +R+HHFK+G C
Sbjct: 622 KLAIALGLISTPSGSPIRIVKNLRVCNDCHSFLKVTSKVYNREIVARDRSRFHHFKEGSC 681

Query: 605 SCNDFW 610
           SC DFW
Sbjct: 682 SCMDFW 687



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 196/396 (49%), Gaps = 36/396 (9%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           + YA  L  +M   D     +++  Y ++  P + +S++  M+    +  D++ +  ++ 
Sbjct: 61  LNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVE-RGVPVDNYTYPFVLA 119

Query: 114 ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS 173
           AC  LGA +LG++ H   + + F  D  V ++L+  Y  CG    A  VFD   +++ V+
Sbjct: 120 ACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDESTVRDVVT 179

Query: 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233
           W  M++A+   G  + A ++                         +D       +R + V
Sbjct: 180 WNIMINAHLNKGLSEKAFDL-------------------------LDEMTKLDNLRPDEV 214

Query: 234 DIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
            +V      S+V ACA    LE GK +H     LG +  L ++NAI+DMY KC DI +A+
Sbjct: 215 TMV------SLVPACAQLGNLERGKFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQ 268

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
           ++F R+R KDV+SWTS++ G A+ G  +E LAL+ +M    ++ +E+T VG++ AC+  G
Sbjct: 269 EVFNRIREKDVLSWTSMLSGLAKSGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTG 328

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
            + +G K    +I+ + I   L   T L+D+ ++ G +D A  + + M    +  TW AL
Sbjct: 329 ALDQG-KYIHLLIDKFEINCDLVLETALVDMYAKCGSIDLALQVFRRMRVR-NVFTWNAL 386

Query: 414 LSACKHHRNTEMGTRVANHLL--SLKPEDPSSYILL 447
           +     H + E    + + +    L P+D +   LL
Sbjct: 387 IGGLAMHGHGEDAISLFDQMEHDKLMPDDVTFIALL 422



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 145/331 (43%), Gaps = 42/331 (12%)

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
           A + SG    A ++F Q    + F+   ++ G  +S+N  +A   +  M   GV  VD  
Sbjct: 54  ALSHSGDLNYARKLFTQMQNPDPFICNTMIRGYARSQNPYEAVSLYYFMVERGVP-VDNY 112

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
               ++ ACA    ++LG++ H  V+  G+ S LF+ NA++  Y  C     A D+F   
Sbjct: 113 TYPFVLAACARLGAVKLGRRFHCEVLKNGFGSDLFVINALIQFYHNCGSFGCACDVFDES 172

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA-GVKPNEVTFVGLIYACSHVGLVGKG 358
             +DVV+W  +I      G +E+   L DEM     ++P+EVT V L+ AC+ +G + +G
Sbjct: 173 TVRDVVTWNIMINAHLNKGLSEKAFDLLDEMTKLDNLRPDEVTMVSLVPACAQLGNLERG 232

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDL-------------------------------LSR 387
            K   S  ++ G+  +L+    +LD+                               L++
Sbjct: 233 -KFLHSYSKELGLDENLRVNNAILDMYCKCDDIESAQEVFNRIREKDVLSWTSMLSGLAK 291

Query: 388 SGHLDEAENLIKAMPF---EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
           SG+  EA  L + M     E DE T   +LSAC      + G  +  HLL  K E     
Sbjct: 292 SGYFQEALALFQKMQLNKIELDEITLVGVLSACAQTGALDQGKYI--HLLIDKFEINCDL 349

Query: 445 IL---LSNVYASAAMWQHVSKVRKLMSVMEV 472
           +L   L ++YA         +V + M V  V
Sbjct: 350 VLETALVDMYAKCGSIDLALQVFRRMRVRNV 380


>gi|30688521|ref|NP_850342.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|18491267|gb|AAL69458.1| At2g41080/T3K9.15 [Arabidopsis thaliana]
 gi|330254831|gb|AEC09925.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 565

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/570 (37%), Positives = 311/570 (54%), Gaps = 34/570 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N LI+ Y +   +  A  + +EMP R   +W +++    Q    ++ +S+F  M  L   
Sbjct: 29  NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLG-F 87

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            PD +   S+      L +  +G+Q+H   +      D VV SSL  MY           
Sbjct: 88  SPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYM---------- 137

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
                                R+G+ +D   +    PVRNL  W  L+ G  Q+      
Sbjct: 138 ---------------------RNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETV 176

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
            Y +  M+  G    + +   +++ +C++ A+   G+QIH   I +G  S + + ++++ 
Sbjct: 177 LYLYKMMKISGCR-PNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLIS 235

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV-SAGVKPNEV 340
           MY+KC  +  A   F     +D V W+S+I     HGQ +E + L++ M     ++ NEV
Sbjct: 236 MYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEV 295

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
            F+ L+YACSH GL  KG +LF  M+E YG  P L+HYTC++DLL R+G LD+AE +I++
Sbjct: 296 AFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRS 355

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           MP + D   W  LLSAC  H+N EM  RV   +L + P D + Y+LL+NV+ASA  W+ V
Sbjct: 356 MPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDV 415

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
           S+VRK M    VKKE G S+ E     H F  G+ S     EI+  L EL  EMK +GY 
Sbjct: 416 SEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYK 475

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           PDT+SVLHDM+++EKE  L  HSE+LAVA+ L+    G  +R++KNLRVC DCH+  K I
Sbjct: 476 PDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYI 535

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           S I  REI +RD +R+HHF +GKCSC D+W
Sbjct: 536 SVIKNREITLRDGSRFHHFINGKCSCGDYW 565



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 157/306 (51%), Gaps = 3/306 (0%)

Query: 147 VDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWT 206
           + MY+K G   +A AV+  ++ KN +S   +++ Y R+G   +A ++F++ P R L  W 
Sbjct: 1   MSMYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWN 60

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
           A+++GL+Q     +    F EM   G    D   L S+    A    + +G+QIHG  I 
Sbjct: 61  AMIAGLIQFEFNEEGLSLFREMHGLGFS-PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIK 119

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
            G E  L +++++  MY +   +   + +   M  +++V+W ++I+G AQ+G  E  L L
Sbjct: 120 YGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYL 179

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
           Y  M  +G +PN++TFV ++ +CS + + G+G+++    I+  G +  +   + L+ + S
Sbjct: 180 YKMMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIK-IGASSVVAVVSSLISMYS 238

Query: 387 RSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYIL 446
           + G L +A         E DE  W++++SA   H   +    + N +      + +    
Sbjct: 239 KCGCLGDAAKAFSEREDE-DEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAF 297

Query: 447 LSNVYA 452
           L+ +YA
Sbjct: 298 LNLLYA 303



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 142/319 (44%), Gaps = 36/319 (11%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H   IK GL     + ++L   Y +   +Q    ++  MP R+ V+W +++    Q 
Sbjct: 111 QQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQN 170

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P+  + ++  M+ +   +P+   F +++ +C  L     G+Q+HA  +         V
Sbjct: 171 GCPETVLYLYK-MMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAV 229

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            SSL+ MY+KCG   +A   F   + ++ V W++M+SAY   G+  +A+E+F        
Sbjct: 230 VSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMA---- 285

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                      Q+  EI                 + +   +++ AC++  + + G ++  
Sbjct: 286 ----------EQTNMEI-----------------NEVAFLNLLYACSHSGLKDKGLELFD 318

Query: 263 LVI-ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQA 320
           +++   G++  L     +VD+  +   +  A+ I   M  + D+V W +++     H  A
Sbjct: 319 MMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNA 378

Query: 321 EETLALYDEMVSAGVKPNE 339
           E    ++ E++   + PN+
Sbjct: 379 EMAQRVFKEILQ--IDPND 395


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 206/601 (34%), Positives = 330/601 (54%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+R +     + +HA I+K G      + NTLI  Y  C  +  A H+ + MP+R  
Sbjct: 128 LKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSI 187

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W S+L+ Y +  L  + + +F  +L L +++ D     S++ ACG L    +G+ +  
Sbjct: 188 VAWNSMLSGYTKNGLWDEVVKLFRKILEL-RIEFDDVTMISVLMACGRLANLEIGELIGE 246

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V      ++ + +SL+DMY                               A+ G+   
Sbjct: 247 YIVSKGLRRNNTLTTSLIDMY-------------------------------AKCGQVDT 275

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A ++F++   R++  W+A++SG  Q+    +A   F EM++  V   + + + S++ +CA
Sbjct: 276 ARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNV-YPNEVTMVSVLYSCA 334

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
                E GK +H  +     +  + +   ++D YAKC  I  + ++F  M  K+V +WT+
Sbjct: 335 MLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTA 394

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G A +G+ +  L  +  M+   VKPN+VTF+G++ ACSH  LV +GR LF SM  D+
Sbjct: 395 LIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDF 454

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            I P ++HY C++D+L R+G L+EA   I  MPF P+   W  LL++C+ H+N EM  + 
Sbjct: 455 DIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKS 514

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
             H+  L+P     YILLSN YA     +   +VR L+   E+KK PG S IE     H 
Sbjct: 515 LEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELDGVVHE 574

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F++ +  H    EI + L ++  ++KR GYVP+T     + E++ KE  +  HSE+LA+A
Sbjct: 575 FFSEDGEHKHSKEIHDALDKMMKQIKRLGYVPNTDDARLEAEEESKETSVSHHSEKLAIA 634

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           YGL+++ P T +R+ KNLR+C DCH   K IS++ +R I+VRD  R+HHFKDG CSCND+
Sbjct: 635 YGLIRTSPRTTIRISKNLRMCRDCHNATKFISQVFERMIIVRDRNRFHHFKDGLCSCNDY 694

Query: 610 W 610
           W
Sbjct: 695 W 695



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/399 (28%), Positives = 200/399 (50%), Gaps = 37/399 (9%)

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
           D + YA  +   + + +  ++  ++        P   + +F  M     +Q D F F+S+
Sbjct: 69  DTIDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHE-KSVQHDKFTFSSV 127

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           +KAC  + A R G+QVHA  + S F  ++ V+++L+ MYA CG    AR VFD +  ++ 
Sbjct: 128 LKACSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSI 187

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
           V+W +MLS Y ++G                  LW  +V            F   +E+R E
Sbjct: 188 VAWNSMLSGYTKNG------------------LWDEVVK----------LFRKILELRIE 219

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
                D + + S++ AC   A LE+G+ I   +++ G      ++ +++DMYAKC  +  
Sbjct: 220 ----FDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVDT 275

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           A+ +F  M ++DVV+W+++I G AQ  + +E L L+ EM    V PNEVT V ++Y+C+ 
Sbjct: 276 ARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAM 335

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
           +G    G K     I+   +  ++   T L+D  ++ G++D +  + K M F+ +  TW 
Sbjct: 336 LGAYETG-KWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFK-NVFTWT 393

Query: 412 ALLSACKHHRNTEMGTRVANHLLS--LKPEDPSSYILLS 448
           AL+    ++   +M     + +L   +KP D +   +LS
Sbjct: 394 ALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLS 432


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 220/656 (33%), Positives = 356/656 (54%), Gaps = 73/656 (11%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  ++KLG      + N+LI AY K   V+ AH+L +E+ + D VSW S++      
Sbjct: 215 KRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVN 274

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 + IF  ML L  ++ D     S++ AC ++G   LG+ +H   V + F ++ V 
Sbjct: 275 GFSGNGLEIFIQMLILG-VEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVF 333

Query: 143 KSSLVDM-------------------------------YAKCGLPNNARAVFDSIK---- 167
            ++L+DM                               Y + GL ++A  +FD ++    
Sbjct: 334 SNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGV 393

Query: 168 ------------------------------LKNSVS-----WTAMLSAYARSGRKKDAME 192
                                         +KN +        A+++ YA+ G  ++A  
Sbjct: 394 RPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARL 453

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F + PV+++  W  ++ G  Q+    +A   F++M+++     D + ++ ++ ACA  A
Sbjct: 454 VFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQFKP--DDITMACVLPACAGLA 511

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
            L+ G++IHG ++  GY S L ++ A+VDMYAKC  ++ A+ +F  + +KD++SWT +I 
Sbjct: 512 ALDKGREIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIA 571

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G   HG   E ++ ++EM  AG++P+E +F  ++ ACSH GL+ +G K F SM  + G+ 
Sbjct: 572 GYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVE 631

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
           P L+HY C++DLL+R G+L +A   I++MP +PD   W  LLS C+ H + ++  +VA H
Sbjct: 632 PKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEH 691

Query: 433 LLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYA 492
           +  L+P++   Y++L+NVYA A  W+ V K+RK M     K+ PG S+IE G   +IF A
Sbjct: 692 IFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVA 751

Query: 493 GETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGL 552
           G + HP   +I  LL++L  +M+   Y      VL + +  EKE     HSE+ A+A+G+
Sbjct: 752 GNSKHPQAKKIDVLLSKLTMQMQNEDYSSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGI 811

Query: 553 LKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           L   PG  +RV KN RVCGDCH + K +S+ TK EIV+RD+ R+HHFKDG CSC D
Sbjct: 812 LNLPPGRTVRVSKNRRVCGDCHEMGKFMSKTTKMEIVLRDSNRFHHFKDGLCSCRD 867



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 116/468 (24%), Positives = 211/468 (45%), Gaps = 69/468 (14%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-DLVQYAHH 59
           + ++ Y   L++CA  +     K +H+ II  G+     L   L+  Y  C DLVQ    
Sbjct: 92  LGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQ-GRK 150

Query: 60  LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
           + +++       W  +++ Y +    ++++S+F  M  L  +  + + F  ++K   +LG
Sbjct: 151 IFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLG-VVGNCYTFTCVLKCFAALG 209

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
             +  K+VH   +   F  +  V +SL+  Y K G   +A  +FD +   + VSW +M++
Sbjct: 210 KVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMIN 269

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
               +G   + +EIF                               I+M   GV+ VD  
Sbjct: 270 GCVVNGFSGNGLEIF-------------------------------IQMLILGVE-VDLT 297

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
            L S++ ACAN   L LG+ +HG  +   +   +  SN ++DMY+KC ++  A ++F +M
Sbjct: 298 TLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKM 357

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
               +VSWTSII    + G   + + L+DEM S GV+P+  T   +++AC+    + KGR
Sbjct: 358 GDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGR 417

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP----------------- 402
            +   +I++ G+  +L     L+++ ++ G ++EA  +   +P                 
Sbjct: 418 DVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQN 476

Query: 403 ----------------FEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
                           F+PD+ T A +L AC      + G  +  H+L
Sbjct: 477 LLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHIL 524


>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Brachypodium distachyon]
          Length = 652

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/508 (41%), Positives = 309/508 (60%), Gaps = 4/508 (0%)

Query: 106 FVFASLVKACGSLGATRLGKQVHAC-FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFD 164
           F F+ L K+  +  +    +  HA  F++  F     V++SL+  Y  CG    AR VFD
Sbjct: 146 FAFSPLAKSAAAARSLPAAQAAHAVSFLVGGFDKHRFVENSLIGAYIACGDVGAARKVFD 205

Query: 165 SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS 224
            + +K+ + WT+++ AY+RS     A E+F Q PV+++  WTA+V+G  Q+   + A   
Sbjct: 206 EMVVKDVICWTSIVVAYSRSRDMGSAEEVFGQCPVKDMVAWTAMVTGYAQNAMPMKALEV 265

Query: 225 FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284
           F  M   G+ I D + L+  + ACA    ++    +  +    G+   + + + +VDMYA
Sbjct: 266 FDRMTALGIGI-DEVSLTGAISACAQLGAVKRAAWVQEIAEMNGFGMNVVVGSGLVDMYA 324

Query: 285 KCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS-AGVKPNEVTFV 343
           KC  I  A  +F  M+ K+V +++S++VG A HG+A E +AL+ +MV  A V PN VTF+
Sbjct: 325 KCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHGRAREAIALFKDMVRRADVAPNHVTFI 384

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
           G++ ACSH G+V  GR  F  M + YGI PS  HYTC++DLL R+G +DEA +L+++M  
Sbjct: 385 GVLTACSHAGMVTDGRYYFAQMKDKYGILPSADHYTCMVDLLGRAGLVDEALDLVRSMTV 444

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
           EP    W ALL AC+ H  TE+    A HL  L+PE   +Y+LLSN  A+A  W  VSKV
Sbjct: 445 EPHGGVWGALLGACRIHGKTEVAKVAAEHLFKLEPEGIGNYVLLSNTLAAAGKWDEVSKV 504

Query: 464 RKLMSVMEVKKEPGYSYIEFGKG-SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPD 522
           RK+M    +KK P  S+ E   G  H F+AG+ SHP   EI + L EL A++K  GYVP 
Sbjct: 505 RKVMRSRRLKKVPAVSWFEGRDGLVHQFFAGDNSHPRTREIKKALLELVAKLKHAGYVPI 564

Query: 523 TSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISR 582
            SS+++D+  +EKER L  HSE+LA+ +GLL       +R+VKNLR+C DCH+ ++++SR
Sbjct: 565 LSSIVYDVSNEEKERLLMGHSEKLALLFGLLTLGSRCTIRIVKNLRICDDCHLFIRLVSR 624

Query: 583 ITKREIVVRDATRYHHFKDGKCSCNDFW 610
               EI+VRD  R+HHFKDG+CSC  FW
Sbjct: 625 FEPVEIIVRDNMRFHHFKDGECSCGGFW 652



 Score = 95.1 bits (235), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 96/193 (49%), Gaps = 6/193 (3%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
            +++ AY +   +  A  +  + P +D V+W +++T Y Q  +P K + +F  M AL  +
Sbjct: 216 TSIVVAYSRSRDMGSAEEVFGQCPVKDMVAWTAMVTGYAQNAMPMKALEVFDRMTALG-I 274

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             D       + AC  LGA +    V     ++ F  + VV S LVDMYAKCGL + A  
Sbjct: 275 GIDEVSLTGAISACAQLGAVKRAAWVQEIAEMNGFGMNVVVGSGLVDMYAKCGLIDEACK 334

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR-----NLFLWTALVSGLVQSR 216
           VFD ++ KN  ++++M+   A  GR ++A+ +F+    R     N   +  +++    + 
Sbjct: 335 VFDGMQEKNVYTYSSMVVGLASHGRAREAIALFKDMVRRADVAPNHVTFIGVLTACSHAG 394

Query: 217 NEIDAFYSFIEMR 229
              D  Y F +M+
Sbjct: 395 MVTDGRYYFAQMK 407



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/154 (22%), Positives = 73/154 (47%), Gaps = 8/154 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           + L+D Y KC L+  A  + + M +++  +++S++         ++ I++F  M+    +
Sbjct: 317 SGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHGRAREAIALFKDMVRRADV 376

Query: 102 QPDHFVFASLVKACGSLGATRLGK----QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
            P+H  F  ++ AC   G    G+    Q+   + + P  D     + +VD+  + GL +
Sbjct: 377 APNHVTFIGVLTACSHAGMVTDGRYYFAQMKDKYGILPSADH---YTCMVDLLGRAGLVD 433

Query: 158 NARAVFDSIKLK-NSVSWTAMLSAYARSGRKKDA 190
            A  +  S+ ++ +   W A+L A    G+ + A
Sbjct: 434 EALDLVRSMTVEPHGGVWGALLGACRIHGKTEVA 467


>gi|297736155|emb|CBI24193.3| unnamed protein product [Vitis vinifera]
          Length = 1083

 Score =  404 bits (1038), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/587 (36%), Positives = 338/587 (57%), Gaps = 6/587 (1%)

Query: 27   AQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQ 86
              II+ G      + N+LI  +     V+ A ++ + M + D +SW ++++AY    L +
Sbjct: 500  GHIIQYGFEDSVSVANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCR 559

Query: 87   KTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSL 146
            +++  F  M  L   + +    +SL+  C S+   + G+ +H   V      +  + ++L
Sbjct: 560  ESLRCFHWMRHLHN-ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTL 618

Query: 147  VDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE---QAPVRNLF 203
            + +Y++ G   +A  VF ++  ++ +SW +M++ Y + G+  D ++I     Q    +  
Sbjct: 619  LTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRV 678

Query: 204  LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
             W AL+ G  ++    +A  ++  +R +G+   + + + S+  A AN AVLE G+Q+HGL
Sbjct: 679  TWNALIGGHAENEEPNEAVKAYKLIREKGIP-ANYITMVSLA-ATANLAVLEEGQQLHGL 736

Query: 264  VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
            VI LG+ES L ++NA +DMY KC ++     +  +   +  +SW  +I   A+HG  ++ 
Sbjct: 737  VIKLGFESDLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKA 796

Query: 324  LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
               + EM+  G KP+ VTFV L+ AC+H GLV +G   + SM  ++G+ P ++H  C++D
Sbjct: 797  RETFHEMLKLGPKPDHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIID 856

Query: 384  LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
            LL RSG L  AE  IK MP  P++  W +LL+AC+ H N E+  + A HLL L P D S+
Sbjct: 857  LLGRSGRLSHAEGFIKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSA 916

Query: 444  YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
            Y+L SNV A++  W+ V  +RK M    +KK+P  S+++     H F  GE  HP    I
Sbjct: 917  YVLYSNVCATSGKWEDVENLRKEMGSNNIKKQPACSWVKLKDKVHSFGMGEKYHPQASRI 976

Query: 504  FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
               L EL    K  GYVPDTS  LHDM++++KE  L+ HSERLA+A+GL+ +   + LR+
Sbjct: 977  SAKLGELMKMTKEAGYVPDTSFALHDMDEEQKEYNLWNHSERLALAFGLINTPESSTLRI 1036

Query: 564  VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             KNLRVCGDCH V K +S I  R+IV+RD  R+HHF  GKCSC D+W
Sbjct: 1037 FKNLRVCGDCHSVYKFVSGIVGRKIVLRDPYRFHHFSGGKCSCGDYW 1083



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 110/429 (25%), Positives = 193/429 (44%), Gaps = 54/429 (12%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           + L+D + KC  ++ A +L   M +RD VSW +++  Y        +  +F +ML    L
Sbjct: 131 HALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLR-GGL 189

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK------------------ 143
            PD +   S+++A    G   +  Q+H       +   D+V                   
Sbjct: 190 VPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKD 249

Query: 144 -----------------------------SSLVDMYAKCGLPNNARAVFDSIKLKNSVSW 174
                                        ++L+DMYAK G   +A+  FD ++ KN +SW
Sbjct: 250 LRKGMLKKDLFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISW 309

Query: 175 TAMLSAYARSG--RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
           T+++S YA+ G      A  +F++   RN   W+ ++SG V+     +A   F +M   G
Sbjct: 310 TSLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLG 369

Query: 233 VDIVDPLVLSSIVGACANFAVL-ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
           V+  +  +++S++ AC+    + + G Q+HG V+  G    +++  A+V  Y     +  
Sbjct: 370 VE-PNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYN 428

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           A+ +F  M   +VVSWTS++VG +  G   E L +Y  M   GV  N+ TF  +  +C  
Sbjct: 429 AQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGL 488

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
           +     G ++   +I+ YG   S+     L+ + S    ++EA  +   M  E D  +W 
Sbjct: 489 LEDQVLGYQVLGHIIQ-YGFEDSVSVANSLISMFSSFSSVEEACYVFDHMN-ECDIISWN 546

Query: 412 ALLSACKHH 420
           A++SA  HH
Sbjct: 547 AMISAYAHH 555



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 190/428 (44%), Gaps = 38/428 (8%)

Query: 43  TLIDAYGKCDLVQYAH--HLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDK 100
           +LI  Y K      AH  ++ +EM  R+  SW+++L+ Y +  L ++ + +F  M  L  
Sbjct: 311 SLISGYAKHGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLG- 369

Query: 101 LQPDHFVFASLVKACGSLG-ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           ++P+ F+ ASL+ AC   G     G QVH   V +    D  V ++LV  Y   GL  NA
Sbjct: 370 VEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNA 429

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           +                               ++FE+ P  N+  WT+L+ G   S N  
Sbjct: 430 Q-------------------------------KLFEEMPDHNVVSWTSLMVGYSDSGNPG 458

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           +    +  MR+EGV   +    +++  +C       LG Q+ G +I  G+E  + ++N++
Sbjct: 459 EVLNVYQRMRQEGVS-GNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSL 517

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           + M++  S +  A  +F  M   D++SW ++I   A HG   E+L  +  M     + N 
Sbjct: 518 ISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNS 577

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
            T   L+  CS V  +  GR +   ++   G+  ++     LL L S +G  ++AE + +
Sbjct: 578 TTLSSLLSVCSSVDNLKWGRGI-HGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQ 636

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
           AM  E D  +W ++++          G ++   LL +   D  ++  L   +A       
Sbjct: 637 AMT-ERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKPDRVTWNALIGGHAENEEPNE 695

Query: 460 VSKVRKLM 467
             K  KL+
Sbjct: 696 AVKAYKLI 703



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 106/449 (23%), Positives = 196/449 (43%), Gaps = 70/449 (15%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  ++K G+     +   L+  YG   LV  A  L EEMP  + VSW S++  Y+ +  
Sbjct: 397 VHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGN 456

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P + ++++  M   + +  +   FA++  +CG L    LG QV    +   F D   V +
Sbjct: 457 PGEVLNVYQRMRQ-EGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVAN 515

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SL+ M++       A  VFD +   + +SW AM+SAYA  G  ++++  F    +R+L  
Sbjct: 516 SLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHW--MRHL-- 571

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                       NE ++                   LSS++  C++   L+ G+ IHGLV
Sbjct: 572 -----------HNETNS-----------------TTLSSLLSVCSSVDNLKWGRGIHGLV 603

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           + LG +S + I N ++ +Y++      A+ +F  M  +D++SW S++    Q G+  + L
Sbjct: 604 VKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCLDGL 663

Query: 325 ALYDEMVSAGVKPNEVTFVGLI----------------------------------YACS 350
            +  E++  G KP+ VT+  LI                                   A +
Sbjct: 664 KILAELLQMG-KPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPANYITMVSLAATA 722

Query: 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTW 410
           ++ ++ +G++L   +I+  G    L      +D+  + G + +   ++   P      +W
Sbjct: 723 NLAVLEEGQQLHGLVIK-LGFESDLHVTNAAMDMYGKCGEMHDVLKML-PQPINRSRLSW 780

Query: 411 AALLSACKHHRNTEMGTRVANHLLSLKPE 439
             L+SA   H   +      + +L L P+
Sbjct: 781 NILISAFARHGCFQKARETFHEMLKLGPK 809



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 117/499 (23%), Positives = 186/499 (37%), Gaps = 156/499 (31%)

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
           +L+ +  + D  ++  +++ C    A + G  +H   + + F  D  + + L+  Y K G
Sbjct: 20  LLSSNPTRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVG 79

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGR---------------------------- 186
               AR VFD +  ++ VSWTAM+S Y+++GR                            
Sbjct: 80  DVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANHALVDFHSK 139

Query: 187 ---KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
               +DA  +F     R++  W A++ G        D+F  F  M R G+ + D   L S
Sbjct: 140 CGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGL-VPDCYTLGS 198

Query: 244 IVGACANFAVLELGKQIHGLVIALGY---------------------------------- 269
           ++ A A    L +  QIHG++  LGY                                  
Sbjct: 199 VLRASAEGGGLIIANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKD 258

Query: 270 -------------ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
                        E    + NA++DMYAK  +I  AK  F  M  K+V+SWTS+I G A+
Sbjct: 259 LFSSTALITGYAHEGIYTMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAK 318

Query: 317 HGQA---------------------------------EETLALYDEMVSAGVKPNEVTFV 343
           HG                                   EE + L+ +M   GV+PN     
Sbjct: 319 HGYGHMAHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVA 378

Query: 344 GLIYACSH------------------------------------VGLVGKGRKLFKSMIE 367
            LI ACS                                     +GLV   +KLF+ M  
Sbjct: 379 SLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEM-P 437

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE---PDEPTWAALLSACKHHRNTE 424
           D+ +      +T L+   S SG+  E  N+ + M  E    ++ T+A + S+C    +  
Sbjct: 438 DHNVVS----WTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTSSCGLLEDQV 493

Query: 425 MGTRVANHLLSLKPEDPSS 443
           +G +V  H++    ED  S
Sbjct: 494 LGYQVLGHIIQYGFEDSVS 512


>gi|3402709|gb|AAD12003.1| hypothetical protein [Arabidopsis thaliana]
          Length = 563

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/570 (37%), Positives = 311/570 (54%), Gaps = 34/570 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N LI+ Y +   +  A  + +EMP R   +W +++    Q    ++ +S+F  M  L   
Sbjct: 27  NILINGYVRAGDLVNARKVFDEMPDRKLTTWNAMIAGLIQFEFNEEGLSLFREMHGLG-F 85

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            PD +   S+      L +  +G+Q+H   +      D VV SSL  MY           
Sbjct: 86  SPDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYGLELDLVVNSSLAHMYM---------- 135

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
                                R+G+ +D   +    PVRNL  W  L+ G  Q+      
Sbjct: 136 ---------------------RNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETV 174

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
            Y +  M+  G    + +   +++ +C++ A+   G+QIH   I +G  S + + ++++ 
Sbjct: 175 LYLYKMMKISGCR-PNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAVVSSLIS 233

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV-SAGVKPNEV 340
           MY+KC  +  A   F     +D V W+S+I     HGQ +E + L++ M     ++ NEV
Sbjct: 234 MYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEV 293

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
            F+ L+YACSH GL  KG +LF  M+E YG  P L+HYTC++DLL R+G LD+AE +I++
Sbjct: 294 AFLNLLYACSHSGLKDKGLELFDMMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRS 353

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           MP + D   W  LLSAC  H+N EM  RV   +L + P D + Y+LL+NV+ASA  W+ V
Sbjct: 354 MPIKTDIVIWKTLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDV 413

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
           S+VRK M    VKKE G S+ E     H F  G+ S     EI+  L EL  EMK +GY 
Sbjct: 414 SEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYK 473

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           PDT+SVLHDM+++EKE  L  HSE+LAVA+ L+    G  +R++KNLRVC DCH+  K I
Sbjct: 474 PDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYI 533

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           S I  REI +RD +R+HHF +GKCSC D+W
Sbjct: 534 SVIKNREITLRDGSRFHHFINGKCSCGDYW 563



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 156/304 (51%), Gaps = 3/304 (0%)

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           MY+K G   +A AV+  ++ KN +S   +++ Y R+G   +A ++F++ P R L  W A+
Sbjct: 1   MYSKLGDFPSAVAVYGRMRKKNYMSSNILINGYVRAGDLVNARKVFDEMPDRKLTTWNAM 60

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
           ++GL+Q     +    F EM   G    D   L S+    A    + +G+QIHG  I  G
Sbjct: 61  IAGLIQFEFNEEGLSLFREMHGLGFS-PDEYTLGSVFSGSAGLRSVSIGQQIHGYTIKYG 119

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
            E  L +++++  MY +   +   + +   M  +++V+W ++I+G AQ+G  E  L LY 
Sbjct: 120 LELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQNGCPETVLYLYK 179

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
            M  +G +PN++TFV ++ +CS + + G+G+++    I+  G +  +   + L+ + S+ 
Sbjct: 180 MMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIK-IGASSVVAVVSSLISMYSKC 238

Query: 389 GHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
           G L +A         E DE  W++++SA   H   +    + N +      + +    L+
Sbjct: 239 GCLGDAAKAFSEREDE-DEVMWSSMISAYGFHGQGDEAIELFNTMAEQTNMEINEVAFLN 297

Query: 449 NVYA 452
            +YA
Sbjct: 298 LLYA 301



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 67/319 (21%), Positives = 142/319 (44%), Gaps = 36/319 (11%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H   IK GL     + ++L   Y +   +Q    ++  MP R+ V+W +++    Q 
Sbjct: 109 QQIHGYTIKYGLELDLVVNSSLAHMYMRNGKLQDGEIVIRSMPVRNLVAWNTLIMGNAQN 168

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P+  + ++  M+ +   +P+   F +++ +C  L     G+Q+HA  +         V
Sbjct: 169 GCPETVLYLYK-MMKISGCRPNKITFVTVLSSCSDLAIRGQGQQIHAEAIKIGASSVVAV 227

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            SSL+ MY+KCG   +A   F   + ++ V W++M+SAY   G+  +A+E+F        
Sbjct: 228 VSSLISMYSKCGCLGDAAKAFSEREDEDEVMWSSMISAYGFHGQGDEAIELFNTMA---- 283

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                      Q+  EI                 + +   +++ AC++  + + G ++  
Sbjct: 284 ----------EQTNMEI-----------------NEVAFLNLLYACSHSGLKDKGLELFD 316

Query: 263 LVI-ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQA 320
           +++   G++  L     +VD+  +   +  A+ I   M  + D+V W +++     H  A
Sbjct: 317 MMVEKYGFKPGLKHYTCVVDLLGRAGCLDQAEAIIRSMPIKTDIVIWKTLLSACNIHKNA 376

Query: 321 EETLALYDEMVSAGVKPNE 339
           E    ++ E++   + PN+
Sbjct: 377 EMAQRVFKEILQ--IDPND 393


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 214/606 (35%), Positives = 340/606 (56%), Gaps = 41/606 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGP---LPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L  C R +     + +HA +IK     Y P   L   LI  Y KCD ++ A H+ + MP+
Sbjct: 65  LNECLRKRAIREGQRVHAHMIKT---HYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPE 121

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           R+ VSW ++++AY+Q     + +S+F  ML     +P+ F FA+++ +C       LG+Q
Sbjct: 122 RNVVSWTAMISAYSQRGYASQALSLFVQMLR-SGTEPNEFTFATVLTSCIGSSGFVLGRQ 180

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +H+  +   +     V SSL+DMYAK                                G+
Sbjct: 181 IHSHIIKLNYEAHVYVGSSLLDMYAK-------------------------------DGK 209

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
             +A  IF+  P R++   TA++SG  Q   + +A   F  ++REG+   + +  +S++ 
Sbjct: 210 IHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQ-SNYVTYTSVLT 268

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           A +  A L+ GKQ+H  ++     S + + N+++DMY+KC ++  A+ IF  +  + V+S
Sbjct: 269 ALSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVIS 328

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           W +++VG ++HG+  E L L++ M+    VKP+ VT + ++  CSH GL  KG  +F  M
Sbjct: 329 WNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDM 388

Query: 366 IE-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
                 + P  +HY C++D+L R+G ++ A   +K MPFEP    W  LL AC  H N +
Sbjct: 389 TSGKISVQPDSKHYGCVVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLD 448

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +G  V + LL ++PE+  +Y++LSN+YASA  W+ V  +R LM    V KEPG S+IE  
Sbjct: 449 IGEFVGHQLLQIEPENAGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELD 508

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
           +  H F+A + SHP ++E+   + EL A  K  GYVPD S VLHD+++++KE+ L  HSE
Sbjct: 509 QVLHTFHASDCSHPRREEVSAKVQELSARFKEAGYVPDLSCVLHDVDEEQKEKILLSHSE 568

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           +LA+ +GL+ +     +RV+KNLR+C DCH   K  S+I  RE+ +RD  R+H    GKC
Sbjct: 569 KLALTFGLIATPESVPIRVIKNLRICVDCHNFAKYTSKIYGREVSLRDKNRFHRIVGGKC 628

Query: 605 SCNDFW 610
           SC D+W
Sbjct: 629 SCGDYW 634



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 170/357 (47%), Gaps = 42/357 (11%)

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
           +AL  L  +   + +++  C    A R G++VHA  + + +     +++ L+  Y KC  
Sbjct: 49  MALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDS 108

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
             +AR VFD +  +N VSWTAM+SAY++ G    A+ +                      
Sbjct: 109 LRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSL---------------------- 146

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI 275
                    F++M R G +  +    ++++ +C   +   LG+QIH  +I L YE+ +++
Sbjct: 147 ---------FVQMLRSGTE-PNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYV 196

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
            ++++DMYAK   I  A+ IF  +  +DVVS T+II G AQ G  EE L L+  +   G+
Sbjct: 197 GSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGM 256

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRK----LFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
           + N VT+  ++ A S +  +  G++    L +S +  Y +   LQ    L+D+ S+ G+L
Sbjct: 257 QSNYVTYTSVLTALSGLAALDHGKQVHNHLLRSEVPSYVV---LQ--NSLIDMYSKCGNL 311

Query: 392 DEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
             A  +   +  E    +W A+L     H        + N ++      P S  +L+
Sbjct: 312 TYARRIFDTL-HERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLA 367



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 68/320 (21%), Positives = 142/320 (44%), Gaps = 49/320 (15%)

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           ++++  C     +  G+++H  +I   Y  C+++   ++  Y KC  +  A+ +F  M  
Sbjct: 62  NTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPE 121

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           ++VVSWT++I   +Q G A + L+L+ +M+ +G +PNE TF  ++ +C        GR++
Sbjct: 122 RNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTSCIGSSGFVLGRQI 181

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP------------------- 402
              +I+       +   + LLD+ ++ G + EA  + + +P                   
Sbjct: 182 HSHIIK-LNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLGL 240

Query: 403 ---------------FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447
                           + +  T+ ++L+A       + G +V NHL  L+ E PS  +L 
Sbjct: 241 DEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNHL--LRSEVPSYVVLQ 298

Query: 448 SNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELL 507
           +++    +   +++  R++   +  +    ++ +  G   H    GE       E+ EL 
Sbjct: 299 NSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKH----GEGR-----EVLELF 349

Query: 508 TELDAEMKRRGYVPDTSSVL 527
             +  E K +   PD+ +VL
Sbjct: 350 NLMIDENKVK---PDSVTVL 366


>gi|326497745|dbj|BAK05962.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 742

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/570 (35%), Positives = 321/570 (56%), Gaps = 3/570 (0%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
            T+I    K  L+  A  LL   P R+ V+W  +++ Y++A    + +  F++ML+ D +
Sbjct: 175 TTVISGLAKMGLLDDARRLLARAPVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLS-DGI 233

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            PD      ++ ACG L     G  +H           D +  +L+DMYAKCG    AR 
Sbjct: 234 APDEVTVIGMLSACGQLKDLNFGCSLHMLVGDKRMLMSDKLVVALIDMYAKCGDTGRARE 293

Query: 162 VFDSI-KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
           VFD++ + +    W AM+  Y + G    A  +F+Q    ++  + +L++G +      +
Sbjct: 294 VFDALGRGRGPQPWNAMIDGYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLRE 353

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
           A   F +MRR G+   D   +  ++ A A+   L  G+ +H  +     E  +++  A++
Sbjct: 354 ALLLFTKMRRHGLG-ADNFTMVGLLTASASLGALPQGRALHACIEQRLVERDVYLGTALL 412

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
           DMY KC  +  A   F +M  +DV +W+++I G A +G  +  L  +  M   G   N V
Sbjct: 413 DMYMKCGRVEEAMVAFKQMSVRDVHTWSAMIGGLAFNGMGKAALEHFFWMKCDGFHANSV 472

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           T++ ++ ACSH  L+ +GR  F  M   + I P ++HY C++DLL RSG LDEA +L++ 
Sbjct: 473 TYIAVLTACSHSCLLDEGRLYFDEMRLLHNIRPQIEHYGCMIDLLGRSGLLDEAMDLVQT 532

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           MP +P+   WA++LSAC+ H+N ++    A+HLL L+P + + Y+ + N+Y  +  W+  
Sbjct: 533 MPMQPNAVIWASILSACRVHKNVDLAQNAAHHLLKLEPAEDAVYVQMYNIYIDSRQWEDA 592

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
           SK+R+LM    VKK  GYS I      H F  G+ SHP   EI  ++ E+   +K  GY 
Sbjct: 593 SKIRRLMEKRGVKKTAGYSSIAVAGQVHKFIVGDRSHPQIAEIVVMMEEIGRRLKSAGYS 652

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           P TS +  D++++EKE+ L  HSE+LA+A+GL+   P   + ++KNLRVC DCH  +K+I
Sbjct: 653 PITSQITVDVDEEEKEQALLAHSEKLAIAFGLVSLAPNLPVHIIKNLRVCEDCHSAIKLI 712

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           SR+  REI+VRD +R+HHF+ G CSCNDFW
Sbjct: 713 SRLWNREIIVRDRSRFHHFRGGVCSCNDFW 742



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 127/456 (27%), Positives = 206/456 (45%), Gaps = 53/456 (11%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDL------VQYAHHLLEEMPQRDHVSWASILTA 78
           LHA +   G   + P    L+++   C        ++YA  L + MP    +   ++   
Sbjct: 18  LHALVTTSGRLLHPPSAAHLLNSLTSCISPSDPLHLRYALSLFDRMPCSTFLFDTALRAC 77

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA-TRLGKQVHA-CFVLSPF 136
           +  ++ P + I ++  M  +D + PD F F  L K C   GA   LG+ +HA CF     
Sbjct: 78  FRASSGPDRPIILYRRMHGVD-VPPDAFTFHFLFKCCARGGAHVLLGRMLHAACFRTLLP 136

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
               ++ S ++ MYA+ GLP +AR  FD   +K+ V+WT ++S  A+ G   DA  +  +
Sbjct: 137 SAVPLIASPIIHMYAELGLPGDARRAFDEASVKDVVAWTTVISGLAKMGLLDDARRLLAR 196

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
           APVRN+  WT L+SG  ++    +A   F  M  +G+   D + +  ++ AC     L  
Sbjct: 197 APVRNVVTWTGLISGYSRAGRAAEAVDCFNSMLSDGI-APDEVTVIGMLSACGQLKDLNF 255

Query: 257 GKQIHGLVIALGYESCLFISN---AIVDMYAKCSDIIAAKDIF---GR------------ 298
           G  +H LV   G +  L       A++DMYAKC D   A+++F   GR            
Sbjct: 256 GCSLHMLV---GDKRMLMSDKLVVALIDMYAKCGDTGRAREVFDALGRGRGPQPWNAMID 312

Query: 299 -----------------MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
                            M   DV+++ S+I G    G+  E L L+ +M   G+  +  T
Sbjct: 313 GYCKVGHVDIARSLFDQMEDHDVITFNSLITGYIHGGRLREALLLFTKMRRHGLGADNFT 372

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
            VGL+ A + +G + +GR L  + IE   +   +   T LLD+  + G ++EA    K M
Sbjct: 373 MVGLLTASASLGALPQGRAL-HACIEQRLVERDVYLGTALLDMYMKCGRVEEAMVAFKQM 431

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
               D  TW+A++     +    MG     H   +K
Sbjct: 432 SVR-DVHTWSAMIGGLAFN---GMGKAALEHFFWMK 463


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 202/569 (35%), Positives = 324/569 (56%), Gaps = 33/569 (5%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+L+D Y KCD +     L  EM +RD+VS+  ++  Y         + +F  M +L   
Sbjct: 279 NSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSL-SF 337

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
                 +ASL+   GS+    +GKQ+HA  VL     +D+V ++L+DMY+KCG+ + A+ 
Sbjct: 338 DRQALPYASLLSVAGSVPHIGIGKQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKT 397

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
            F +   K  VSWTA                               +++G VQ+  + +A
Sbjct: 398 NFINKNDKTGVSWTA-------------------------------MITGCVQNGQQEEA 426

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  MRR G+   D    SS + A +N A++ LG+Q+H  +I  G+ S +F  +A++D
Sbjct: 427 LQLFCGMRRAGLS-PDRATFSSTIKASSNLAMIGLGRQLHSYLIRSGHMSSVFSGSALLD 485

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  +  A   F  M  ++ +SW ++I   A +GQA+  + +++ M+  G KP+ VT
Sbjct: 486 MYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGFKPDSVT 545

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F+ ++ ACSH GL  +  K F+ M  +YGI+P  +HY+C++D L R G  D+ + ++  M
Sbjct: 546 FLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQEMLGEM 605

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           PFE D   W+++L +C+ H N ++    A  L S+   D + Y++LSN++A A  W+  +
Sbjct: 606 PFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILSNIFAKAGKWEDAA 665

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
            V+K+M    ++KE GYS++E     + F + + ++P+  EI + L  L  EM ++GY P
Sbjct: 666 GVKKIMRDRGLRKETGYSWVEVKHKVYSFSSNDQTNPMITEIKDELERLYKEMDKQGYKP 725

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           DTS  L  ++   K   L +HSERLA+A+ L+ + PGT +RV+KNL  C DCH  +KM+S
Sbjct: 726 DTSCTLQQVDDDIKLESLKYHSERLAIAFALINTPPGTPIRVMKNLSACVDCHSAIKMMS 785

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I  R+I+VRD++R+HHFKDG CSC D+W
Sbjct: 786 KIVNRDIIVRDSSRFHHFKDGFCSCGDYW 814



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 126/433 (29%), Positives = 212/433 (48%), Gaps = 39/433 (9%)

Query: 19  ALTVKTLHAQIIKLGL-HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILT 77
           A+ + +LH   +KLGL H    + NTL+DAY K  L+  A  + +EMP RD V++ +++ 
Sbjct: 155 AIIIASLHPFALKLGLLHSNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMM 214

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
             ++     + + +F+ M     L    F F++++     +G   LG+QVH   V     
Sbjct: 215 GCSKEGSHAEALDLFAAMRR-KGLAATRFTFSTVLTVATGVGDLCLGRQVHG-LVARATS 272

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            +  V +SL+D Y+KC   +  + +F  +  +++VS+  M++ YA               
Sbjct: 273 SNVFVNNSLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYA--------------- 317

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
                  W    S +++          F EM+    D    L  +S++    +   + +G
Sbjct: 318 -------WNRCASIVLRL---------FREMQSLSFD-RQALPYASLLSVAGSVPHIGIG 360

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           KQIH  ++ LG  S   + NA++DMY+KC  + AAK  F     K  VSWT++I G  Q+
Sbjct: 361 KQIHAQLVLLGLSSEDLVGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQN 420

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           GQ EE L L+  M  AG+ P+  TF   I A S++ ++G GR+L   +I   G   S+  
Sbjct: 421 GQQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLGRQLHSYLIRS-GHMSSVFS 479

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--S 435
            + LLD+ ++ G LDEA      MP E +  +W A++SA  H+   +   ++   +L   
Sbjct: 480 GSALLDMYTKCGCLDEALQTFDEMP-ERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYG 538

Query: 436 LKPEDPSSYILLS 448
            KP+  +   +LS
Sbjct: 539 FKPDSVTFLSVLS 551



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 172/388 (44%), Gaps = 38/388 (9%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQ--RDHVSWASILTAYNQANLPQKT--ISIFSTMLA 97
           N ++  Y +   +  AHHL    P   RD V+W  ++ A+  A   + +  +S+F  ML 
Sbjct: 70  NRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLFRDMLR 129

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
            + + PD    A+++    + G T                   ++ +SL     K GL +
Sbjct: 130 -EGVAPDRVTVATVLNLPPASGGTAAA----------------IIIASLHPFALKLGLLH 172

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
           +           N V    +L AY + G    A  +F++ P R+   + A++ G  +  +
Sbjct: 173 S-----------NVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGS 221

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             +A   F  MRR+G+        S+++        L LG+Q+HGLV A    S +F++N
Sbjct: 222 HAEALDLFAAMRRKGL-AATRFTFSTVLTVATGVGDLCLGRQVHGLV-ARATSSNVFVNN 279

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           +++D Y+KC  +   K +F  M  +D VS+  +I G A +  A   L L+ EM S     
Sbjct: 280 SLLDFYSKCDCLDEMKKLFHEMIERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDR 339

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE-N 396
             + +  L+     V  +G G+++   ++   G++        L+D+ S+ G LD A+ N
Sbjct: 340 QALPYASLLSVAGSVPHIGIGKQIHAQLVL-LGLSSEDLVGNALIDMYSKCGMLDAAKTN 398

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTE 424
            I     +    +W A+++ C  +   E
Sbjct: 399 FINKN--DKTGVSWTAMITGCVQNGQQE 424



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 133/286 (46%), Gaps = 11/286 (3%)

Query: 159 ARAVFDSIKLKNSV-SWTAMLSAYARSGRKKDAMEIFEQAP--VRNLFLWTALVSGLVQS 215
           ARA+FD +  +N+  S   MLS Y+RSG+   A  +F  +P  +R+   WT ++     +
Sbjct: 53  ARALFDQMPHRNNAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASA 112

Query: 216 --RNEIDAFYSFIEMRREGV--DIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG-YE 270
                 DA   F +M REGV  D V    + ++  A    A   +   +H   + LG   
Sbjct: 113 PGARASDAVSLFRDMLREGVAPDRVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLLH 172

Query: 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEM 330
           S + + N ++D Y K   + AA+ +F  M  +D V++ ++++G ++ G   E L L+  M
Sbjct: 173 SNVVVCNTLLDAYCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAM 232

Query: 331 VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH 390
              G+     TF  ++   + VG +  GR++   +      + ++     LLD  S+   
Sbjct: 233 RRKGLAATRFTFSTVLTVATGVGDLCLGRQVHGLVAR--ATSSNVFVNNSLLDFYSKCDC 290

Query: 391 LDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
           LDE + L   M  E D  ++  +++    +R   +  R+   + SL
Sbjct: 291 LDEMKKLFHEM-IERDNVSYNVMIAGYAWNRCASIVLRLFREMQSL 335



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 1/97 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH+ +I+ G        + L+D Y KC  +  A    +EMP+R+ +SW ++++AY   
Sbjct: 462 RQLHSYLIRSGHMSSVFSGSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHY 521

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
              +  I +F  ML     +PD   F S++ AC   G
Sbjct: 522 GQAKNAIKMFEGMLCYG-FKPDSVTFLSVLSACSHNG 557


>gi|225435554|ref|XP_002283117.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 624

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 221/600 (36%), Positives = 337/600 (56%), Gaps = 17/600 (2%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLI-----DAYGKCDLVQYAHHLLEEMPQRDHVSWASIL 76
           +K  HA +I  GL  +    N L+      ++G    + YAH L +++P+ D   + +++
Sbjct: 31  IKQTHAHLITTGLILHPITANKLLKVLIASSFGS---LSYAHQLFDQIPKPDVFIYNTMI 87

Query: 77  TAYNQANLP---QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
            A+  A +P     ++ IF +M+ +    P+ + F  + KACG+      G+Q+    + 
Sbjct: 88  KAH--AVIPTSSHNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIK 145

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
                +  V ++++ MYA  GL + AR VFD    ++  SW  M+  Y  SG    A E+
Sbjct: 146 IGLESNLFVTNAMIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEM 205

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
           F++   R++  WT +++G VQ     +A   F EM + G    +   L+S + ACAN   
Sbjct: 206 FDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGPP-PNEFTLASALAACANLVA 264

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR--RKDVVSWTSII 311
           L+ G+ IH  +     +    +  +++DMYAKC +I  A  +F      +  V  W ++I
Sbjct: 265 LDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMI 324

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G A HG+++E + L+++M    V PN+VTFV L+ ACSH  LV +GR  FKSM   YGI
Sbjct: 325 GGYAMHGKSKEAIDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGI 384

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
            P ++HY C++DLL RSG L EAE  +  MP  PD   W ALL AC+ H++ E G R+  
Sbjct: 385 EPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGK 444

Query: 432 HLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFY 491
            +  L  +    ++LL+N+Y+++  W     VR+ + V   KK PG S IE     H F 
Sbjct: 445 IIKELDSDHIGCHVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFL 504

Query: 492 AGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE-KERQLFWHSERLAVAY 550
            G+ SHP   +++  L E+  ++K  GYVP+   VL D++ +E KE  L  HSE+LA+A+
Sbjct: 505 VGDRSHPQTKQLYLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAF 564

Query: 551 GLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           GL+ + PGT +R+VKNLRVC DCH   K IS++ KREI+VRD  RYHHFKDG CSC D+W
Sbjct: 565 GLINTPPGTAIRIVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 624



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 99/230 (43%), Gaps = 34/230 (14%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAH------- 58
           ++   + C      L  + +    IK+GL     + N +I  Y    LV  A        
Sbjct: 120 FVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNAMIRMYANWGLVDEARRVFDWSL 179

Query: 59  ------------------------HLLEEMPQRDHVSWASILTAYNQANLPQKTISIFST 94
                                    + +EM +RD VSW +I+  Y Q    ++ + +F  
Sbjct: 180 DQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHE 239

Query: 95  MLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
           ML      P+ F  AS + AC +L A   G+ +H     S    ++ + +SL+DMYAKCG
Sbjct: 240 MLQTGP-PPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCG 298

Query: 155 LPNNARAVF-DSIKLKNSV-SWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
             + A  VF D   LK  V  W AM+  YA  G+ K+A+++FEQ  V  +
Sbjct: 299 EIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKV 348



 Score = 40.8 bits (94), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 5/175 (2%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL-EEMPQRD 68
           L  CA        + +H  I K  +     L  +L+D Y KC  + +A  +  +E   + 
Sbjct: 256 LAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKL 315

Query: 69  HV-SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
            V  W +++  Y      ++ I +F  M  ++K+ P+   F +L+ AC        G+  
Sbjct: 316 KVWPWNAMIGGYAMHGKSKEAIDLFEQM-KVEKVSPNKVTFVALLNACSHGKLVEEGRGY 374

Query: 128 HACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNA-RAVFDSIKLKNSVSWTAMLSA 180
                 S   + ++     +VD+  + GL   A   VF+     ++  W A+L A
Sbjct: 375 FKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGA 429


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/570 (37%), Positives = 326/570 (57%), Gaps = 11/570 (1%)

Query: 42  NTLIDAY-GKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDK 100
           N+++  Y  +   ++ A  L + +P+ D  S+  +L  Y      +     F  M   D 
Sbjct: 40  NSMLAGYSNRRGKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDT 99

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
                   AS            +  Q    F++ P   + V  ++++  Y + G  + A+
Sbjct: 100 --------ASWNTMISGFSQNGMMDQARELFLVMP-VRNSVSWNAMISGYVESGDLDLAK 150

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            +F+   +++ V+WTAM++ + + G+ + A + FE+ P++NL  W A+++G +++    +
Sbjct: 151 QLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAEN 210

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
               F  M   G    +P  LSS++  C+N + L+LGKQ+H L+        +    +++
Sbjct: 211 GLKLFKRMVESGFR-PNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLL 269

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
            MY KC D+  A  +F  M +KDVV+W ++I G AQHG  E+ L L+D+M   G+KP+ +
Sbjct: 270 SMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWI 329

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           TFV ++ AC+H G V  G + F SM+ DYG+     HYTC++DLL R G L EA +LIK 
Sbjct: 330 TFVAVLSACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKK 389

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           MPF+P    +  LL AC+ H+N E+    A +LL+L PE  + Y+ L+NVYA+   W HV
Sbjct: 390 MPFKPHSAIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAGYVQLANVYAAMNRWDHV 449

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
           + VR+ M   +V K PGYS+IE     H F +G+  HP    I E L EL+ +M+  GYV
Sbjct: 450 AMVRRSMKDNKVIKTPGYSWIEVKSVVHEFRSGDRIHPELAFIHEKLNELERKMRLAGYV 509

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           PD    LHD+ +++K++ L  HSE+LA+AYGL++   GT +RV KNLRVCGDCH   K I
Sbjct: 510 PDLEYALHDVGEEQKKQILLRHSEKLAIAYGLIRMPLGTPIRVFKNLRVCGDCHSATKYI 569

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           S I  R I+VRD TR+HHF+ G+CSC D+W
Sbjct: 570 SAIEGRVIIVRDTTRFHHFRQGECSCGDYW 599



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 147/318 (46%), Gaps = 44/318 (13%)

Query: 140 DVVKSS-LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA-RSGRKKDAMEI---- 193
           +V+ S+ ++  + + G  N+A  VF+S+ +K +V+W +ML+ Y+ R G+ K A ++    
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIKVARQLFDRI 63

Query: 194 ---------------------------FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
                                      F+Q PV++   W  ++SG  Q+     A   F+
Sbjct: 64  PEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFL 123

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            M      + + +  ++++        L+L KQ+      +     +    A++  + K 
Sbjct: 124 VM-----PVRNSVSWNAMISGYVESGDLDLAKQL----FEVAPVRSVVAWTAMITGFMKF 174

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             I  A+  F  M  K++V+W ++I G  ++ QAE  L L+  MV +G +PN  +   ++
Sbjct: 175 GKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVL 234

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
             CS++  +  G+++ + +I    ++ ++   T LL +  + G L++A  L   MP + D
Sbjct: 235 LGCSNLSALKLGKQVHQ-LICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMP-QKD 292

Query: 407 EPTWAALLSACKHHRNTE 424
             TW A++S    H   E
Sbjct: 293 VVTWNAMISGYAQHGAGE 310



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 1/102 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  I K  +        +L+  Y KC  ++ A  L   MPQ+D V+W ++++ Y Q 
Sbjct: 247 KQVHQLICKSPVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQKDVVTWNAMISGYAQH 306

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
              +K + +F  M   + ++PD   F +++ AC   G   LG
Sbjct: 307 GAGEKALYLFDKMRD-EGMKPDWITFVAVLSACNHAGFVDLG 347


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/599 (36%), Positives = 330/599 (55%), Gaps = 41/599 (6%)

Query: 17  QIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASIL 76
           QI +T K +H   +K G+     +  +  D Y K      A ++ +EMPQR+  +W + +
Sbjct: 122 QIPMTGKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYI 181

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
           +   Q       I  F   L +   +P+   F + + AC  +    LG+Q+HA  V   +
Sbjct: 182 SNAVQDRRSLDAIVAFKEFLCVHG-EPNSITFCAFLNACVDMVRLNLGRQLHAFIVRCGY 240

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSI-KLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
            +D  V + L+D Y KCG   +A  VF+ I   KN VSW +ML+A               
Sbjct: 241 KEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAA--------------- 285

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP--LVLSSIVGACANFAV 253
                           LVQ+  E  A   F++ R+E    V+P   ++SS++ ACA    
Sbjct: 286 ----------------LVQNHEEERACMVFLQARKE----VEPTDFMISSVLSACAELGG 325

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           LELG+ +H L +    E  +F+ +A+VDMY KC  I  A+ +F  +  +++V+W ++I G
Sbjct: 326 LELGRSVHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLVTWNAMIGG 385

Query: 314 TAQHGQAEETLALYDEMV--SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            A  G  +  L L++EM   S G++P+ VT + ++  CS VG V +G ++F+SM  +YGI
Sbjct: 386 YAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGI 445

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
            P  +H+ C++DLL RSG +D A   I+ M  +P    W ALL AC+ H  TE+G   A 
Sbjct: 446 EPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKTELGKIAAE 505

Query: 432 HLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFY 491
            L  L   D  ++++LSN+ ASA  W+  + VRK M  + +KK  GYS+I      H+F 
Sbjct: 506 KLFELDHVDSGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIAVKNRIHVFQ 565

Query: 492 AGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYG 551
           A ++SH    EI  +L +L   MK  GYVPDT+  L D+E +EK  ++++HSE++A+A+G
Sbjct: 566 AKDSSHDRNSEIQAMLGKLRGGMKEAGYVPDTNLSLFDLEDEEKASEVWYHSEKIALAFG 625

Query: 552 LLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           L+    G  +R+ KNLR+CGDCH  +K ISRI  REI+VRD  R+H FKDG CSC D+W
Sbjct: 626 LIALPQGVPIRITKNLRICGDCHSAIKFISRIVGREIIVRDNHRFHRFKDGCCSCKDYW 684



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/468 (25%), Positives = 210/468 (44%), Gaps = 58/468 (12%)

Query: 23  KTLHAQIIKLGLHQYGPLP----NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           +T+HA II+       PLP    N L++ Y K DL+  A H+L     R  V+W S+++ 
Sbjct: 26  RTIHAHIIRT---HVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLTHLRTVVTWTSLISG 82

Query: 79  --YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
             +N+  LP     +  T +  D +QP+ F F  + KA   +     GKQ+H   +    
Sbjct: 83  CVHNRRFLPAL---LHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGM 139

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             D  V  S  DMY K G   +A  +FD +  +N  +W A +S   +  R  DA      
Sbjct: 140 IYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDA------ 193

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
                                 I AF  F+ +  E     + +   + + AC +   L L
Sbjct: 194 ----------------------IVAFKEFLCVHGEP----NSITFCAFLNACVDMVRLNL 227

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTA 315
           G+Q+H  ++  GY+  + ++N ++D Y KC DI++A+ +F R+  RK+VVSW S++    
Sbjct: 228 GRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALV 287

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL----FKSMIEDYGI 371
           Q+ + E    ++ +     V+P +     ++ AC+ +G +  GR +     K+ +ED   
Sbjct: 288 QNHEEERACMVFLQ-ARKEVEPTDFMISSVLSACAELGGLELGRSVHALAVKACVEDNIF 346

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
             S      L+D+  + G ++ AE +   +P E +  TW A++    H  + +M  R+  
Sbjct: 347 VGS-----ALVDMYGKCGSIENAEQVFSELP-ERNLVTWNAMIGGYAHQGDIDMALRLFE 400

Query: 432 HLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKK--EPG 477
            +         SY+ L ++ +  +    V +  ++   M +    EPG
Sbjct: 401 EMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFESMRLNYGIEPG 448



 Score = 97.8 bits (242), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 152/353 (43%), Gaps = 40/353 (11%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFV---LSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           +  SL+++  S   + LG+ +HA  +   ++P      + + LV+MY+K  L N+A+ V 
Sbjct: 8   LLGSLLESAVSTHCSILGRTIHAHIIRTHVTPL--PSFLSNHLVNMYSKLDLLNSAQHVL 65

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
               L+  V+W                               T+L+SG V +R  + A  
Sbjct: 66  SLTHLRTVVTW-------------------------------TSLISGCVHNRRFLPALL 94

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            F  MRR+ V   D      +  A A   +   GKQIHGL +  G    +F+  +  DMY
Sbjct: 95  HFTNMRRDNVQPND-FTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFVGCSCFDMY 153

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
            K      A ++F  M ++++ +W + I    Q  ++ + +  + E +    +PN +TF 
Sbjct: 154 CKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHGEPNSITFC 213

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
             + AC  +  +  GR+L  + I   G    +     L+D   + G +  AE +   +  
Sbjct: 214 AFLNACVDMVRLNLGRQL-HAFIVRCGYKEDVSVANGLIDFYGKCGDIVSAEMVFNRIGN 272

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
             +  +W ++L+A   +   E    V   L + K  +P+ +++ S + A A +
Sbjct: 273 RKNVVSWCSMLAALVQNHEEERACMV--FLQARKEVEPTDFMISSVLSACAEL 323


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/589 (35%), Positives = 339/589 (57%), Gaps = 29/589 (4%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           V  +HAQ+I+ G  Q   +   L+ +  KC  + YA  + +     +   + +++  +  
Sbjct: 48  VLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVS 107

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
           +      I ++S ML  D + PD+++ AS++KACGS  A R G++VH+  +      + +
Sbjct: 108 SGNYFDAIQLYSRMLH-DSILPDNYLMASILKACGSQLALREGREVHSRALKLGLSSNRL 166

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V+  ++++Y KCG   +AR VF+                           E+ E    ++
Sbjct: 167 VRLRIMELYGKCGELGDARRVFE---------------------------EMPEDVVAKD 199

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
              WTA++ G V++     A  +F  M+ E V   +   +  ++ AC+    LE+G+ +H
Sbjct: 200 TVCWTAMIDGFVRNEEMNRALEAFRGMQGENVR-PNEFTIVCVLSACSQLGALEIGRWVH 258

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             +     E  LF+ NA+++MY++C  I  A+ +F  M+ +DV+++ ++I G + +G++ 
Sbjct: 259 SYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSR 318

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           + + L+  M+   ++P  VTFVG++ ACSH GLV  G K+F SM  DYG+ P ++HY C+
Sbjct: 319 QAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCM 378

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL R G L+EA +LI+ M   PD      LLSACK H+N E+G +VA  L      D 
Sbjct: 379 VDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKVLEDRGQADS 438

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            +Y+LLS+VYAS+  W+  ++VR  M    ++KEPG S IE     H F  G+  HP K+
Sbjct: 439 GTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPRKE 498

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            I+E L EL+  ++  GY P+   VL D+E  EKE  L  HSERLA+ YGL+ + P TV+
Sbjct: 499 RIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAIHSERLAICYGLISTEPCTVI 558

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           RV+KNLRVC DCH  +K+I++IT+R++VVRD  R+H+F++G CSC D+W
Sbjct: 559 RVMKNLRVCYDCHSAIKLIAKITRRKVVVRDRNRFHYFENGACSCGDYW 607



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 67/291 (23%), Positives = 133/291 (45%), Gaps = 41/291 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--- 66
           L+ C         + +H++ +KLGL     +   +++ YGKC  +  A  + EEMP+   
Sbjct: 137 LKACGSQLALREGREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVV 196

Query: 67  -RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            +D V W +++  + +     + +  F  M   + ++P+ F    ++ AC  LGA  +G+
Sbjct: 197 AKDTVCWTAMIDGFVRNEEMNRALEAFRGMQG-ENVRPNEFTIVCVLSACSQLGALEIGR 255

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            VH+         +  V ++L++MY++CG  + A+ VFD +K ++ +++  M+S  + +G
Sbjct: 256 WVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNG 315

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE---ID-AFYSFIEMRR----------- 230
           + + A+E+F     R L        G++ + +    +D  F  F  M R           
Sbjct: 316 KSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHY 375

Query: 231 --------------EGVDIV-------DPLVLSSIVGACANFAVLELGKQI 260
                         E  D++       D ++L +++ AC     LELG+Q+
Sbjct: 376 GCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQV 426


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  404 bits (1037), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/581 (36%), Positives = 330/581 (56%), Gaps = 35/581 (6%)

Query: 31  KLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTIS 90
           K GLH    +   LI  Y KC        L +++ Q D +S+ ++++ Y   +  +  ++
Sbjct: 242 KKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVT 301

Query: 91  IFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMY 150
           +F  +LA  + + +      L+         +L + +                    ++ 
Sbjct: 302 LFRELLASGQ-RVNSSTLVGLIPVYLPFNHLQLSRLIQ-------------------NLS 341

Query: 151 AKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVS 210
            K G           I L+ SVS TA+ + Y R    + A ++F+++P ++L  W A++S
Sbjct: 342 LKIG-----------IILQPSVS-TALTTVYCRLNEVQFARQLFDESPEKSLASWNAMIS 389

Query: 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE 270
           G  Q+     A   F EM  +     +P+ ++SI+ ACA    L +GK +HGL+ +   E
Sbjct: 390 GYTQNGLTDRAISLFQEMMPQLSP--NPVTVTSILSACAQLGALSIGKWVHGLIKSERLE 447

Query: 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEM 330
           S +++S A+VDMYAKC  I+ A+ +F  M  K+VV+W ++I G   HG  +E L L+ EM
Sbjct: 448 SNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEM 507

Query: 331 VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH 390
           + +G+ P  VTF+ ++YACSH GLV +G ++F SM  +YG  P  +HY C++D+L R+G 
Sbjct: 508 LQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQ 567

Query: 391 LDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNV 450
           L  A   I+ MP EP    W ALL AC  H+NTEM    +  L  L PE+   Y+LLSN+
Sbjct: 568 LTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNI 627

Query: 451 YASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTEL 510
           Y++   +   + VR+++   ++ K PG + IE     ++F +G+ SHP    IFE+L +L
Sbjct: 628 YSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKL 687

Query: 511 DAEMKRRGYVPDT-SSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRV 569
             +M+  GY  +T ++ LHD+E +EKE  +  HSE+LA+A+GL+ + PGT +R++KNLRV
Sbjct: 688 TGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRV 747

Query: 570 CGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           C DCH   K IS+IT+R IVVRDA R+HHFK+G CSC D+W
Sbjct: 748 CLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 107/502 (21%), Positives = 208/502 (41%), Gaps = 78/502 (15%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           + AQ+I  G+H        L   +     V +   L  ++ + D   +  ++  ++   L
Sbjct: 33  IQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGL 92

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P+ +I +++ +     L+PD+F +A  + A   L   R+G  +HA  ++     +  V S
Sbjct: 93  PKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGS 152

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           ++VD+Y K      AR VFD +  +++V W  M+S ++R+   +D++ +           
Sbjct: 153 AIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRV----------- 201

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                               F++M   G+   D   L++++ A A      LG  I  L 
Sbjct: 202 --------------------FVDMLDVGLSF-DSTTLATVLTAVAELQEYRLGMGIQCLA 240

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
              G  S +++   ++ +Y+KC      + +F ++ + D++S+ ++I G   + + E  +
Sbjct: 241 SKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAV 300

Query: 325 ALYDEMVSAGVKPNEVTFVGLI---YACSHVGLVGKGRKL-------------------- 361
            L+ E++++G + N  T VGLI      +H+ L    + L                    
Sbjct: 301 TLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVY 360

Query: 362 -------FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAA 412
                  F   + D     SL  +  ++   +++G  D A +L + M     P+  T  +
Sbjct: 361 CRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTS 420

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK------VRKL 466
           +LSAC       +G  V   + S + E        SNVY S A+    +K       R+L
Sbjct: 421 ILSACAQLGALSIGKWVHGLIKSERLE--------SNVYVSTALVDMYAKCGSIVEARQL 472

Query: 467 MSVMEVKKEPGYSYIEFGKGSH 488
             +M  K    ++ +  G G H
Sbjct: 473 FDLMVDKNVVTWNAMITGYGLH 494



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 11/199 (5%)

Query: 30  IKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTI 89
           +K+G+     +   L   Y + + VQ+A  L +E P++   SW ++++ Y Q  L  + I
Sbjct: 342 LKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAI 401

Query: 90  SIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM 149
           S+F  M+   +L P+     S++ AC  LGA  +GK VH          +  V ++LVDM
Sbjct: 402 SLFQEMMP--QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDM 459

Query: 150 YAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ------APVRNLF 203
           YAKCG    AR +FD +  KN V+W AM++ Y   G  K+A+++F +       P    F
Sbjct: 460 YAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTF 519

Query: 204 ---LWTALVSGLVQSRNEI 219
              L+    SGLV   NEI
Sbjct: 520 LSILYACSHSGLVSEGNEI 538



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 3/173 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA+       K +H  I    L     +   L+D Y KC  +  A  L + M  ++ 
Sbjct: 422 LSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV-H 128
           V+W +++T Y      ++ + +F  ML    + P    F S++ AC   G    G ++ H
Sbjct: 482 VTWNAMITGYGLHGHGKEALKLFYEMLQ-SGIPPTGVTFLSILYACSHSGLVSEGNEIFH 540

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
           +      F       + +VD+  + G   NA    + + L+     W A+L A
Sbjct: 541 SMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGA 593


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/596 (36%), Positives = 337/596 (56%), Gaps = 39/596 (6%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--RDHVSWASILTAY 79
           ++ LH+     G   Y  + N+L+  Y K  +++ A  +   M +  RD VSW S++ AY
Sbjct: 157 IRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAY 216

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            Q     K ++++  M+     + D F  AS++     +     G Q HA  + + F  +
Sbjct: 217 GQHKRGLKALALYRDMVH-RGFEIDMFTLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKN 275

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             V S L+DMYAKCG                     A +S         ++ ++FE+   
Sbjct: 276 RHVGSGLIDMYAKCG---------------------AGMS---------ESRKVFEEICG 305

Query: 200 RNLFLWTALVSGLVQSRN-EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            +L +W  ++SG  Q++   ++A   F +M+R G    D       + AC+N +    GK
Sbjct: 306 SDLVVWNTMISGYSQNKELSVEALECFRQMQRAGY-WPDDCSFVCAISACSNLSSPSQGK 364

Query: 259 QIHGLVIALGYESC-LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           Q H L +     S  + ++NA+V MY+KC ++  A+ +F RM + + V+  SII G AQH
Sbjct: 365 QFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQH 424

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G   E+L L+++M++A + P  +T V ++ AC+H G V +G+K F  M + +GI P  +H
Sbjct: 425 GIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEH 484

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
           Y+C++DLL R+G L EAE LI  MPF P    WAALL AC+ + N E+  + AN  L L+
Sbjct: 485 YSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLE 544

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
           P +   YI+L+++Y++A  W+  +++RKLM    ++K+PG S+IE  K  H+F A + SH
Sbjct: 545 PTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELNKRVHVFVAEDNSH 604

Query: 498 PLKDEIFELLTELDAEMKRRGYVPDTS-SVLHDMEQKEKERQLFW--HSERLAVAYGLLK 554
           P   EI   L E+  +MKR GYVPD   + + D E  E+E+++    HSE+LAVA+GLL 
Sbjct: 605 PRIKEIHMYLDEMFVKMKRAGYVPDVRWAFVKDDETGEQEKEIMLAHHSEKLAVAFGLLF 664

Query: 555 SVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +  G  L VVKNLR+CGDCH  +K +S I +R+I VRDA R+H F+DG+CSC D+W
Sbjct: 665 TKHGEPLLVVKNLRICGDCHNAIKFMSAIARRKITVRDAYRFHCFEDGRCSCGDYW 720



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/439 (25%), Positives = 193/439 (43%), Gaps = 76/439 (17%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N LI AY K  L+  AHHL +++PQ D VS+ +++ AY         +S+F  M  +  L
Sbjct: 78  NALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMREMG-L 136

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             D F F+ ++ AC       L +Q+H+    S F     VK+SL+  Y+K G+   A  
Sbjct: 137 VMDGFTFSGVITAC--CNHVGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNGILEEAEM 194

Query: 162 VFDSI--KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           VF+ +  ++++ VSW +M+ AY +  R   A+               AL   +V    EI
Sbjct: 195 VFNGMGEEVRDEVSWNSMIVAYGQHKRGLKAL---------------ALYRDMVHRGFEI 239

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           D F                  L+S++   +    L  G Q H   I  G+     + + +
Sbjct: 240 DMF-----------------TLASVLTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGL 282

Query: 280 VDMYAKC-SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ-AEETLALYDEMVSAGVKP 337
           +DMYAKC + +  ++ +F  +   D+V W ++I G +Q+ + + E L  + +M  AG  P
Sbjct: 283 IDMYAKCGAGMSESRKVFEEICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWP 342

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           ++ +FV  I ACS++    +G++     ++    +  +     L+ + S+ G+L +A  L
Sbjct: 343 DDCSFVCAISACSNLSSPSQGKQFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKL 402

Query: 398 IKAMP--------------------------FE--------PDEPTWAALLSACKHHRNT 423
            + MP                          FE        P   T  ++LSAC H    
Sbjct: 403 FQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRV 462

Query: 424 EMGTRVAN---HLLSLKPE 439
           E G +  N    +  ++PE
Sbjct: 463 EEGKKYFNMMKDIFGIEPE 481



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 107/443 (24%), Positives = 197/443 (44%), Gaps = 52/443 (11%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           F  ++K+C +      GK +H  ++ S       + +  + +Y+KC L   A   F+   
Sbjct: 11  FRQILKSCIANKDLLTGKSLHTIYLKSLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQTH 70

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
             N  S+ A+++AYA+      A  +F+Q P  +L  +  L++      + + A   F E
Sbjct: 71  EPNVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGE 130

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           MR  G+ ++D    S ++ AC N   + L +Q+H L  + G++S + + N+++  Y+K  
Sbjct: 131 MREMGL-VMDGFTFSGVITACCNH--VGLIRQLHSLAFSSGFDSYVSVKNSLLTYYSKNG 187

Query: 288 DIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGL 345
            +  A+ +F  M    +D VSW S+IV   QH +  + LALY +MV  G + +  T   +
Sbjct: 188 ILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASV 247

Query: 346 IYACSHV-----GL----------VGKGRKLFKSMIEDY-----GITPSLQHY--TCLLD 383
           +   S V     GL            K R +   +I+ Y     G++ S + +   C  D
Sbjct: 248 LTTFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSD 307

Query: 384 LLSR----SGHLDEAENLIKAMP---------FEPDEPTWAALLSACKHHRNTEMGTRVA 430
           L+      SG+    E  ++A+          + PD+ ++   +SAC +  +   G +  
Sbjct: 308 LVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQF- 366

Query: 431 NHLLSLKPEDPSSYILLSNVYASA-AMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
            H L++K E PS+ I ++N   +  +   ++   RKL   M     P ++ +        
Sbjct: 367 -HALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRM-----PQHNTVTLNS---- 416

Query: 490 FYAGETSHPLKDEIFELLTELDA 512
             AG   H +  E   L  ++ A
Sbjct: 417 IIAGYAQHGIGTESLNLFEQMLA 439


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/586 (36%), Positives = 324/586 (55%), Gaps = 61/586 (10%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  I++ G      + + L+D Y KC  +  A  +LE M   D VSW S++    +  L
Sbjct: 262 VHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGL 321

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            ++ +S+F  M  L  ++ D F + S++     +   R    VH+  V + F    +V +
Sbjct: 322 GEEALSLFRIM-HLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNN 380

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +LVDMYAK       R  FD                         A ++FE+   +++  
Sbjct: 381 ALVDMYAK-------RGYFDY------------------------AFDVFEKMTDKDVIS 409

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           WT+LV+G V + +  +A   F EMR  G+   D +V+++++ ACA   VLE GKQ+H   
Sbjct: 410 WTSLVTGCVHNGSYEEALRLFCEMRIMGIH-PDQIVIAAVLSACAELTVLEFGKQVHANF 468

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           +  G  S L + N++V MYAKC  I  A  +F  M  +DV++WT++IVG AQ+G+  +  
Sbjct: 469 LKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRD-- 526

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
                                     H GLV  GR  F+SM E YGI P  +HY C++DL
Sbjct: 527 --------------------------HAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDL 560

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
           L RSG L EA+ L+  M  +PD   W ALL+AC+ H N E+G R AN+L  L+P++   Y
Sbjct: 561 LGRSGKLMEAKELLNQMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPY 620

Query: 445 ILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIF 504
           +LLSN+Y++A  W+  +K R+LM +  V KEPG S+IE     H F + + SHP   EI+
Sbjct: 621 VLLSNLYSAAGKWEEAAKTRRLMKLRGVSKEPGCSWIEMSSKVHRFMSEDRSHPRTAEIY 680

Query: 505 ELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVV 564
             + E+   +K  GYVPD +  LHDM+++ KE  L +HSE+LAVA+GLL   PG  +R+ 
Sbjct: 681 SKVDEIMILIKEAGYVPDMNFALHDMDEEGKELGLAYHSEKLAVAFGLLTMPPGAPIRIF 740

Query: 565 KNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           KNLR+CGDCH  MK +S +  R +++RD+  +HHF++G CSC+D+W
Sbjct: 741 KNLRICGDCHTAMKYVSGVFHRHVILRDSNCFHHFREGACSCSDYW 786



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/408 (26%), Positives = 205/408 (50%), Gaps = 24/408 (5%)

Query: 113 KACGSLGATRLG----KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL 168
           K C  L  T L     + V++C  +    D + V S+L    +KCG  ++AR +FD +  
Sbjct: 14  KVCHQLEHTELNHHIRRFVNSCGTVHSSSDSNWVLSNL----SKCGRVDDARKLFDVMPD 69

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228
           ++  SW  M+ AYA SGR  +A ++F + P+R+   W++L+SG  +   +++A   F EM
Sbjct: 70  RDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFWEM 129

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
           + EG +  +     S++  C+ + +LE GKQIH   I   ++S  F+   +VDMYAKC  
Sbjct: 130 QYEG-ERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCKC 188

Query: 289 IIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
           I+ A+ +F     +++ V WT+++ G +Q+G   + +  + +M   G++ N+ TF  ++ 
Sbjct: 189 ILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSILT 248

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           AC  +   G G ++   ++   G   ++   + L+D+ S+ G L  A  +++ M  E D+
Sbjct: 249 ACGSISACGFGAQVHGCIVRS-GFGANVFVGSALVDMYSKCGDLSNARRMLETM--EVDD 305

Query: 408 P-TWAALLSACKHHRNTEMGTRVAN--HLLSLKPEDPSSYILLSNVYASAAMWQHVSKVR 464
           P +W +++  C      E    +    HL  +K  D  +Y  + N ++       V  +R
Sbjct: 306 PVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKI-DEFTYPSVLNCFS------FVMDMR 358

Query: 465 KLMSVMEVKKEPGYSYIEFGKGSHI-FYAGETSHPLKDEIFELLTELD 511
             MSV  +  + G+   +    + +  YA         ++FE +T+ D
Sbjct: 359 NAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVFEKMTDKD 406



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/481 (24%), Positives = 221/481 (45%), Gaps = 81/481 (16%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY------NQA-----NLPQKTIS 90
           N ++    KC  V  A  L + MP RD  SW +++ AY      N+A       P ++  
Sbjct: 45  NWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCI 104

Query: 91  IFSTMLA-------------------LDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
            +S++++                    +  +P+ F + S+++ C        GKQ+HA  
Sbjct: 105 TWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHA 164

Query: 132 VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFD-SIKLKNSVSWTAMLSAYARSGRKKDA 190
           + + F  +  V + LVDMYAKC     A  +F+ +   +N V WTAM++ Y+++G    A
Sbjct: 165 IKTQFDSNAFVVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKA 224

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
           +E F                                +MR EG++  +     SI+ AC +
Sbjct: 225 IECFR-------------------------------DMRGEGIE-CNQFTFPSILTACGS 252

Query: 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
            +    G Q+HG ++  G+ + +F+ +A+VDMY+KC D+  A+ +   M   D VSW S+
Sbjct: 253 ISACGFGAQVHGCIVRSGFGANVFVGSALVDMYSKCGDLSNARRMLETMEVDDPVSWNSM 312

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370
           IVG  + G  EE L+L+  M    +K +E T+  ++   S V +  +      S+I   G
Sbjct: 313 IVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFV-MDMRNAMSVHSLIVKTG 371

Query: 371 ITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV- 429
                     L+D+ ++ G+ D A ++ + M  + D  +W +L++ C H+ + E   R+ 
Sbjct: 372 FEAYKLVNNALVDMYAKRGYFDYAFDVFEKMT-DKDVISWTSLVTGCVHNGSYEEALRLF 430

Query: 430 -ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
               ++ + P+     I+++ V ++ A           ++V+E  K+   ++++ G GS 
Sbjct: 431 CEMRIMGIHPDQ----IVIAAVLSACAE----------LTVLEFGKQVHANFLKSGLGSS 476

Query: 489 I 489
           +
Sbjct: 477 L 477


>gi|224119910|ref|XP_002318193.1| predicted protein [Populus trichocarpa]
 gi|222858866|gb|EEE96413.1| predicted protein [Populus trichocarpa]
          Length = 533

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/565 (37%), Positives = 310/565 (54%), Gaps = 35/565 (6%)

Query: 48  YGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV 107
           Y KC L      + +EM  +D V W +++TAY QA  P++ + +F  M   + L  D   
Sbjct: 2   YAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKKMQQEEGLLADSIA 61

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
             S+  A G LG  +    VH         ++  V +S++ M+ KCG    AR VFD + 
Sbjct: 62  VVSVASAVGQLGDVKNAHTVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMM- 120

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
                                  ME       R++  W +++SG  Q+    +A   F E
Sbjct: 121 -----------------------ME-------RDVISWNSMLSGYTQNGQATEALLLFDE 150

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           MR        P+    +V ACA      LG++ H  ++    E    +SNA++DMYAKC 
Sbjct: 151 MRDSDCQPT-PVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTNLSNALMDMYAKCG 209

Query: 288 DIIAAKDIFGRM--RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGL 345
           D+  A D+F  +    ++  SW  +I G   HG  +E L L+  M   GV+PN  TF  +
Sbjct: 210 DLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEGVEPNHFTFTSI 269

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP 405
           + ACSH GL+ +GRK F  M +   +T   +H+ C++D+L R+G L EA +LIK MP  P
Sbjct: 270 LSACSHAGLIDEGRKCFAEM-KRLSVTLEDKHHACVVDMLGRAGLLQEAFDLIKEMPSPP 328

Query: 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRK 465
            +  W ALL ACK H N E+G   A++LL L+P     Y+L+SN+YA++  W+ V K+R+
Sbjct: 329 SDGVWGALLLACKIHGNMELGKTAASNLLQLEPNHTGYYVLMSNIYAASNKWKEVWKLRQ 388

Query: 466 LMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSS 525
            M    +KK   +S IE+GK    F+  +  +P + E+++ +  L  EMK  GYVPD S 
Sbjct: 389 DMKNKGLKKPAAFSMIEYGKDILGFHTADQENPYRHEVYKKMESLAIEMKMAGYVPDLSC 448

Query: 526 VLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITK 585
            LHD+E+++KER L +HSE+LAVA+G+LK  PG V+RV KNLRVC DCH   K IS I +
Sbjct: 449 ALHDVEEEDKERMLNYHSEKLAVAFGVLKIDPGMVIRVTKNLRVCNDCHSAFKYISHIYQ 508

Query: 586 REIVVRDATRYHHFKDGKCSCNDFW 610
           R+I+VRDA R+HHF+ G CSC D+W
Sbjct: 509 RKIIVRDANRFHHFQGGTCSCKDYW 533



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 133/273 (48%), Gaps = 33/273 (12%)

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           MYAKCGL  + R +FD +  K+ V WTAM++AY ++ + ++A+ +F++            
Sbjct: 1   MYAKCGLFVDCRKIFDEMSTKDLVCWTAMITAYEQAEKPEEALILFKK------------ 48

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
                              M++E   + D + + S+  A      ++    +HG      
Sbjct: 49  -------------------MQQEEGLLADSIAVVSVASAVGQLGDVKNAHTVHGYAFRKS 89

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
               L + N+I+ M+ KC +   A+ +F  M  +DV+SW S++ G  Q+GQA E L L+D
Sbjct: 90  LIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLSGYTQNGQATEALLLFD 149

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
           EM  +  +P  VT + ++ AC+++G    GRK F   I D  +         L+D+ ++ 
Sbjct: 150 EMRDSDCQPTPVTALIMVSACAYLGFRHLGRK-FHDFIVDSRMEIDTNLSNALMDMYAKC 208

Query: 389 GHLDEAENLIKAM-PFEPDEPTWAALLSACKHH 420
           G L++A +L   + P E +  +W  L+S    H
Sbjct: 209 GDLEKAVDLFNGIPPTERNAGSWNVLISGYGMH 241



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 107/220 (48%), Gaps = 7/220 (3%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           T+H    +  L +   + N+++  + KC   + A  + + M +RD +SW S+L+ Y Q  
Sbjct: 80  TVHGYAFRKSLIEELCVGNSILAMHTKCGNTEKARLVFDMMMERDVISWNSMLSGYTQNG 139

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
              + + +F  M   D  QP       +V AC  LG   LG++ H   V S    D  + 
Sbjct: 140 QATEALLLFDEMRDSD-CQPTPVTALIMVSACAYLGFRHLGRKFHDFIVDSRMEIDTNLS 198

Query: 144 SSLVDMYAKCGLPNNARAVFDSI--KLKNSVSWTAMLSAYARSGRKKDAMEIF----EQA 197
           ++L+DMYAKCG    A  +F+ I    +N+ SW  ++S Y   G  K+A+E+F    E+ 
Sbjct: 199 NALMDMYAKCGDLEKAVDLFNGIPPTERNAGSWNVLISGYGMHGHGKEALELFSRMQEEG 258

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD 237
              N F +T+++S    +    +    F EM+R  V + D
Sbjct: 259 VEPNHFTFTSILSACSHAGLIDEGRKCFAEMKRLSVTLED 298


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/581 (36%), Positives = 330/581 (56%), Gaps = 35/581 (6%)

Query: 31  KLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTIS 90
           K GLH    +   LI  Y KC        L +++ Q D +S+ ++++ Y   +  +  ++
Sbjct: 242 KKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVT 301

Query: 91  IFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMY 150
           +F  +LA  + + +      L+         +L + +                    ++ 
Sbjct: 302 LFRELLASGQ-RVNSSTLVGLIPVYLPFNHLQLSRLIQ-------------------NLS 341

Query: 151 AKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVS 210
            K G           I L+ SVS TA+ + Y R    + A ++F+++P ++L  W A++S
Sbjct: 342 LKIG-----------IILQPSVS-TALTTVYCRLNEVQFARQLFDESPEKSLASWNAMIS 389

Query: 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE 270
           G  Q+     A   F EM  +     +P+ ++SI+ ACA    L +GK +HGL+ +   E
Sbjct: 390 GYTQNGLTDRAISLFQEMMPQLSP--NPVTVTSILSACAQLGALSIGKWVHGLIKSERLE 447

Query: 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEM 330
           S +++S A+VDMYAKC  I+ A+ +F  M  K+VV+W ++I G   HG  +E L L+ EM
Sbjct: 448 SNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEM 507

Query: 331 VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGH 390
           + +G+ P  VTF+ ++YACSH GLV +G ++F SM  +YG  P  +HY C++D+L R+G 
Sbjct: 508 LQSGIPPTGVTFLSILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQ 567

Query: 391 LDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNV 450
           L  A   I+ MP EP    W ALL AC  H+NTEM    +  L  L PE+   Y+LLSN+
Sbjct: 568 LTNALEFIERMPLEPGPAVWGALLGACMIHKNTEMANVASKRLFQLDPENVGYYVLLSNI 627

Query: 451 YASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTEL 510
           Y++   +   + VR+++   ++ K PG + IE     ++F +G+ SHP    IFE+L +L
Sbjct: 628 YSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFEMLEKL 687

Query: 511 DAEMKRRGYVPDT-SSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRV 569
             +M+  GY  +T ++ LHD+E +EKE  +  HSE+LA+A+GL+ + PGT +R++KNLRV
Sbjct: 688 TGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRIIKNLRV 747

Query: 570 CGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           C DCH   K IS+IT+R IVVRDA R+HHFK+G CSC D+W
Sbjct: 748 CLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 107/502 (21%), Positives = 208/502 (41%), Gaps = 78/502 (15%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           + AQ+I  G+H        L   +     V +   L  ++ + D   +  ++  ++   L
Sbjct: 33  IQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDLFLFNVLIRGFSDNGL 92

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P+ +I +++ +     L+PD+F +A  + A   L   R+G  +HA  ++     +  V S
Sbjct: 93  PKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGVLLHAHSIVDGVASNLFVGS 152

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           ++VD+Y K      AR VFD +  +++V W  M+S ++R+   +D++ +           
Sbjct: 153 AIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSYFEDSIRV----------- 201

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                               F++M   G+   D   L++++ A A      LG  I  L 
Sbjct: 202 --------------------FVDMLDVGLSF-DSTTLATVLTAVAELQEYRLGMGIQCLA 240

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
              G  S +++   ++ +Y+KC      + +F ++ + D++S+ ++I G   + + E  +
Sbjct: 241 SKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAV 300

Query: 325 ALYDEMVSAGVKPNEVTFVGLI---YACSHVGLVGKGRKL-------------------- 361
            L+ E++++G + N  T VGLI      +H+ L    + L                    
Sbjct: 301 TLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVY 360

Query: 362 -------FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM--PFEPDEPTWAA 412
                  F   + D     SL  +  ++   +++G  D A +L + M     P+  T  +
Sbjct: 361 CRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQLSPNPVTVTS 420

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK------VRKL 466
           +LSAC       +G  V   + S + E        SNVY S A+    +K       R+L
Sbjct: 421 ILSACAQLGALSIGKWVHGLIKSERLE--------SNVYVSTALVDMYAKCGSIVEARQL 472

Query: 467 MSVMEVKKEPGYSYIEFGKGSH 488
             +M  K    ++ +  G G H
Sbjct: 473 FDLMVDKNVVTWNAMITGYGLH 494



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/199 (33%), Positives = 102/199 (51%), Gaps = 11/199 (5%)

Query: 30  IKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTI 89
           +K+G+     +   L   Y + + VQ+A  L +E P++   SW ++++ Y Q  L  + I
Sbjct: 342 LKIGIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAI 401

Query: 90  SIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM 149
           S+F  M+   +L P+     S++ AC  LGA  +GK VH          +  V ++LVDM
Sbjct: 402 SLFQEMMP--QLSPNPVTVTSILSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDM 459

Query: 150 YAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ------APVRNLF 203
           YAKCG    AR +FD +  KN V+W AM++ Y   G  K+A+++F +       P    F
Sbjct: 460 YAKCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTF 519

Query: 204 ---LWTALVSGLVQSRNEI 219
              L+    SGLV   NEI
Sbjct: 520 LSILYACSHSGLVSEGNEI 538



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 41/173 (23%), Positives = 71/173 (41%), Gaps = 3/173 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA+       K +H  I    L     +   L+D Y KC  +  A  L + M  ++ 
Sbjct: 422 LSACAQLGALSIGKWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDKNV 481

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV-H 128
           V+W +++T Y      ++ + +F  ML    + P    F S++ AC   G    G ++ H
Sbjct: 482 VTWNAMITGYGLHGHGKEALKLFYEMLQ-SGIPPTGVTFLSILYACSHSGLVSEGNEIFH 540

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
           +      F       + +VD+  + G   NA    + + L+     W A+L A
Sbjct: 541 SMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGA 593


>gi|242047142|ref|XP_002461317.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
 gi|241924694|gb|EER97838.1| hypothetical protein SORBIDRAFT_02g000820 [Sorghum bicolor]
          Length = 640

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/596 (36%), Positives = 343/596 (57%), Gaps = 14/596 (2%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LHA  ++ G+ Q   +   L  AY     +  A  LL   P    V + S + A++   L
Sbjct: 49  LHAAAVRAGVDQDKAVDFRLQRAYAASGRLDLAVALLRRTPDPTAVFYTSAIHAHSSRGL 108

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
               +++ S ML    L P     ++ + ACG L    +G+ +H   V      +  V +
Sbjct: 109 HHAALALLSEMLLSHGLLPTAHTLSASLPACGGLA---VGRALHGYAVKLALSGEPYVAT 165

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           +L+ MYA+ G    AR +FD ++   + VS TAML+ YA+ G   DA  +F+  P ++L 
Sbjct: 166 ALLGMYARAGDAAAARVLFDGMQPDPHVVSVTAMLTCYAKMGLLDDARSLFDGLPSKDLI 225

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            W A++ G  Q     +A   F  M R GV+  D + +   + A A     E G+ +H  
Sbjct: 226 CWNAMMDGYTQHGRPSEALRLFRRMLRSGVE-PDEVSVVLALSAVAQLGTAESGRWLHSF 284

Query: 264 VIALGYESCLF---ISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHG 318
           V             +  A++DMY KC  +  A  +FG +    +D+V+W +++ G A HG
Sbjct: 285 VTNSSSRRVRLNARVGTALIDMYYKCGSLEDAVAVFGDLGAGDRDIVAWNAMVNGYAMHG 344

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
            + E LA + ++ + G+ P ++TF+G++ ACSH GLV +GR+LF+SM E+YGI P ++HY
Sbjct: 345 HSREALAAFGQLRAQGLWPTDITFIGVLNACSHSGLVDEGRELFRSMAEEYGIEPKVEHY 404

Query: 379 TCLLDLLSRSGHLDEAENLIKAMP-FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
            C++DLL R+G ++EA  L+++M   +PD   WA+LL+AC+ H+N E+G R+A+HL++  
Sbjct: 405 GCMVDLLGRAGRVEEAFELVQSMTRTKPDAVMWASLLAACRLHKNMELGQRIADHLVANG 464

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
             +  +Y+LLSN+YA+A  W+ V +VR +M    ++KEPG S +E G+    F AG+ SH
Sbjct: 465 LANSGTYVLLSNMYAAAGNWREVGRVRAMMRASGIQKEPGCSAVEVGRRVVEFVAGDRSH 524

Query: 498 PLKDEIFELLTELDAEMKRRGYVPDTS---SVLHDMEQKEKERQLFWHSERLAVAYGLLK 554
           P   EI+  L E++   + RG+VP T      L D +   KE+ L  HSE+LA+A+GL+ 
Sbjct: 525 PRAAEIYAKLEEVNGMARARGHVPRTELVLHDLDDDDTAAKEQALAVHSEKLALAFGLIS 584

Query: 555 SVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + PGT +++VKNLR C DCH V+K++S +T R+IV RD  R+HHF DG C+C D+W
Sbjct: 585 TPPGTAIKIVKNLRACADCHAVLKLVSEVTGRKIVFRDRNRFHHFVDGSCTCGDYW 640


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/589 (35%), Positives = 327/589 (55%), Gaps = 36/589 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + + A+ +  G      + N LI+ Y KC  ++ A  + + +  RD ++W ++++ Y + 
Sbjct: 183 REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQ 242

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + +F  M   D  +P+   F  L+ AC +L     G+ +H       +  D V+
Sbjct: 243 GAATQALELFQRMGPNDP-KPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVI 301

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            + L++MY KC                              S   ++A ++FE+   R++
Sbjct: 302 GNVLLNMYTKC------------------------------SSSLEEARQVFERMRTRDV 331

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W  L+   VQ     DA   F +M+ E V   + + LS+++ ACA       GK +H 
Sbjct: 332 ITWNILIVAYVQYGQAKDALDIFKQMQLENV-APNEITLSNVLSACAVLGAKRQGKAVHA 390

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L+ +   ++ + + N++++MY +C  +     +F  +R K +VSW+++I   AQHG +  
Sbjct: 391 LIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRT 450

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L  + E++  G+  ++VT V  + ACSH G++ +G + F SM+ D+G+ P  +H+ C++
Sbjct: 451 GLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMV 510

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLLSR+G L+ AENLI  MPF PD   W +LLS CK H +T+   RVA+ L  L+ ED  
Sbjct: 511 DLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEH 570

Query: 443 SYI-LLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
           S + LLSNVYA A  W  V K R   +    +K PG SYIE     H F AG+ SHP ++
Sbjct: 571 STVTLLSNVYAEAGRWDDVRKTRNRRA---ARKNPGCSYIEINDTVHEFVAGDKSHPEEE 627

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            I   +  L  +MK  GYVPD   VLH+++++EKE+ L +HSE+LA+AYGL+ + PGT L
Sbjct: 628 LIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPL 687

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +VKNLR C DCH   K ISRI  R+IVVRD+TR+HHF++G CSC D+W
Sbjct: 688 HIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 118/421 (28%), Positives = 215/421 (51%), Gaps = 42/421 (9%)

Query: 12  VCARHQIALTVKTLHAQIIKLGLHQYGPLPNT-LIDAYGKCDLVQYAHHLLEEMPQRDHV 70
           VC+  +     + LHA I++  L ++  +  T LI  Y +C  ++ A    +EM ++  V
Sbjct: 67  VCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLV 126

Query: 71  SWASILTAYNQANLPQKTISIFSTMLAL--DKLQPDHFVFASLVKACGSLGATRLGKQVH 128
           +W +++  Y++    +  + I+  M++   + ++PD   F+S + AC  +G    G+++ 
Sbjct: 127 TWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIE 186

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           A  V S +  D +V+++L++MY+KCG   +AR VFD +K ++ ++W  M+S YA+ G   
Sbjct: 187 ARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAAT 246

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI--VG 246
            A+E+F+                                  R G +   P V++ I  + 
Sbjct: 247 QALELFQ----------------------------------RMGPNDPKPNVVTFIGLLT 272

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII-AAKDIFGRMRRKDVV 305
           AC N   LE G+ IH  V   GYES L I N +++MY KCS  +  A+ +F RMR +DV+
Sbjct: 273 ACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVI 332

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +W  +IV   Q+GQA++ L ++ +M    V PNE+T   ++ AC+ +G   +G K   ++
Sbjct: 333 TWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQG-KAVHAL 391

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
           I        +     L+++ +R G LD+   +  A+  +    +W+ L++A   H ++  
Sbjct: 392 IASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIR-DKSLVSWSTLIAAYAQHGHSRT 450

Query: 426 G 426
           G
Sbjct: 451 G 451



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 203/411 (49%), Gaps = 36/411 (8%)

Query: 48  YGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV 107
           YGKC  V  A  +   +   + VSW  I+ A+ +    ++ +  +  M+ L+ L+PD  +
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMV-LEGLRPDGAM 60

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV-KSSLVDMYAKCGLPNNARAVFDSI 166
           F   +  C S    + G+ +HA  + +   + D++  ++L+ MYA+C     AR  FD +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
             K  V+W A+++ Y+R+G  + A++I++                              +
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQD----------------------------MV 152

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
               EG+   D +  SS + AC     +  G++I    +A GY S   + NA+++MY+KC
Sbjct: 153 SKSPEGMK-PDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQNALINMYSKC 211

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             + +A+ +F R++ +DV++W ++I G A+ G A + L L+  M     KPN VTF+GL+
Sbjct: 212 GSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLL 271

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR-SGHLDEAENLIKAMPFEP 405
            AC+++  + +GR + + + ED G    L     LL++ ++ S  L+EA  + + M    
Sbjct: 272 TACTNLEDLEQGRAIHRKVRED-GYESDLVIGNVLLNMYTKCSSSLEEARQVFERMRTR- 329

Query: 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           D  TW  L+ A   +   +    +    + L+   P+  I LSNV ++ A+
Sbjct: 330 DVITWNILIVAYVQYGQAKDALDIFKQ-MQLENVAPNE-ITLSNVLSACAV 378



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 146/303 (48%), Gaps = 43/303 (14%)

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           MY KCG   +A AVF +I+  NSVSWT +++A+AR+G  ++A+  + +  +  L      
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGL------ 54

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
                               R +G   V        +G C++   L+ G+ +H +++   
Sbjct: 55  --------------------RPDGAMFV------VAIGVCSSSKDLKQGQLLHAMILETR 88

Query: 269 -YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327
             E  + +  A++ MYA+C D+  A+  F  M +K +V+W ++I G +++G     L +Y
Sbjct: 89  LLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIY 148

Query: 328 DEMVSA---GVKPNEVTFVGLIYACSHVGLVGKGRKL-FKSMIEDYGITPSLQHYTCLLD 383
            +MVS    G+KP+ +TF   +YAC+ VG + +GR++  +++   Y     +Q+   L++
Sbjct: 149 QDMVSKSPEGMKPDAITFSSALYACTVVGDISQGREIEARTVASGYASDSIVQN--ALIN 206

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           + S+ G L+ A  +   +    D   W  ++S    +      T+       + P DP  
Sbjct: 207 MYSKCGSLESARKVFDRLK-NRDVIAWNTMISG---YAKQGAATQALELFQRMGPNDPKP 262

Query: 444 YIL 446
            ++
Sbjct: 263 NVV 265



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 3/173 (1%)

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  +  A  +F  +   + VSWT I+   A++G   E L  Y  MV  G++P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           FV  I  CS    + +G+ L   ++E   +   +   T L+ + +R   L+ A      M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE--DPSSYILLSNVYA 452
             +    TW AL++    + +     ++   ++S  PE   P +    S +YA
Sbjct: 121 G-KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYA 172


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/591 (36%), Positives = 323/591 (54%), Gaps = 33/591 (5%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           L  K +H  ++KLG      +  +L+  Y +  LV  A  L ++MP RD  SW ++++ Y
Sbjct: 11  LDGKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGY 70

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            Q     + + I   M  L+ ++ D    AS++  C  +G    GK +H   +      +
Sbjct: 71  CQNGNAAEALDIADEM-RLEGVKMDAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFE 129

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             V ++L++MYAK G   +A+ VF  + +K+ VS                          
Sbjct: 130 LFVSNALINMYAKFGSLGHAQKVF-GLLIKDVVS-------------------------- 162

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                W  L++G  Q+    +A   ++ M      I +     SI+ A ++   L+ G +
Sbjct: 163 -----WNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMR 217

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           IHG VI     S +F+   ++DMY KC  +  A  +F ++ RK+ V W ++I     HG 
Sbjct: 218 IHGQVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGD 277

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
            E+ L L+ EM +  VKP+ +TFV L+ ACSH GLV   +  F  M E+YGI PSL+HY 
Sbjct: 278 GEKALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYG 337

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++DL  R+G L+ A N IK MP +PD   W ALL+AC+ H N E+G   +  L  +  E
Sbjct: 338 CMVDLFGRAGELEMAFNFIKKMPIQPDASAWGALLNACRIHGNIELGKHASERLFEVDSE 397

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           +   Y+LLSN+YA+   W+ V  VR L     ++K PG+S I       +FY G  +HP 
Sbjct: 398 NVGYYVLLSNIYANVGKWEGVDDVRSLARDRGLRKNPGWSSIILNNKVDVFYTGNQTHPK 457

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
            +EI+  L +L +++K  GYVPD   VL D+E+ EKE  L  HSERLA+AYG++ + P T
Sbjct: 458 CEEIYRELRDLTSKIKTIGYVPDFCFVLQDVEEDEKEHILMGHSERLAIAYGIISTSPKT 517

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +R+ KNLRVCGDCH V K IS IT+REI+VRD++R+HHFK G CSC D+W
Sbjct: 518 PIRIFKNLRVCGDCHTVTKFISIITEREIIVRDSSRFHHFKGGTCSCGDYW 568



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/342 (32%), Positives = 181/342 (52%), Gaps = 43/342 (12%)

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           +VKACG L     GK++H C VL    + DV V +SLV MY++ GL  +AR +FD +  +
Sbjct: 3   VVKACGDL---LDGKKIH-CLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPAR 58

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
           +  SW AM+S Y ++G   +A++I +                               EMR
Sbjct: 59  DRGSWNAMISGYCQNGNAAEALDIAD-------------------------------EMR 87

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289
            EGV + D + ++S++  CA    +  GK IH  VI  G E  LF+SNA+++MYAK   +
Sbjct: 88  LEGVKM-DAITVASVLPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSL 146

Query: 290 IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYA 348
             A+ +FG +  KDVVSW ++I G AQ+G A E + +Y  M     + PN+ T+V ++ A
Sbjct: 147 GHAQKVFG-LLIKDVVSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPA 205

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
            SHVG + +G ++   +I++  +   +   TCL+D+  + G LD+A +L   +P +   P
Sbjct: 206 YSHVGALQQGMRIHGQVIKNC-LYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVP 264

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLS--LKPEDPSSYILLS 448
            W A++S    H + E    +   + +  +KP+  +   LLS
Sbjct: 265 -WNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLS 305



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 142/317 (44%), Gaps = 41/317 (12%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VCA+    L+ K +H  +IK GL     + N LI+ Y K   + +A  +   +  +D 
Sbjct: 102 LPVCAQVGDILSGKLIHLYVIKHGLEFELFVSNALINMYAKFGSLGHAQKVF-GLLIKDV 160

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++T Y Q  L  + I ++  M   +++ P+   + S++ A   +GA + G ++H 
Sbjct: 161 VSWNTLITGYAQNGLASEAIEVYLLMEEHEEIIPNQGTWVSILPAYSHVGALQQGMRIHG 220

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +    D  V + L+DMY KCG  ++A ++F  +  KNSV W AM+S Y   G  + 
Sbjct: 221 QVIKNCLYSDVFVGTCLIDMYGKCGKLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEK 280

Query: 190 AMEIFEQAPVRNL----FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
           A+E+F +     +      + +L+S    S    DA + F  M  E              
Sbjct: 281 ALELFREMKAERVKPDHITFVSLLSACSHSGLVSDAQWCFNMMEEE-------------- 326

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDV 304
                          +G+  +L +  C+      VD++ +  ++  A +   +M  + D 
Sbjct: 327 ---------------YGIKPSLKHYGCM------VDLFGRAGELEMAFNFIKKMPIQPDA 365

Query: 305 VSWTSIIVGTAQHGQAE 321
            +W +++     HG  E
Sbjct: 366 SAWGALLNACRIHGNIE 382


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 215/591 (36%), Positives = 331/591 (56%), Gaps = 35/591 (5%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           +K +HA +++ G  +   L   L++       + YA  + +EM +     W ++   Y +
Sbjct: 27  LKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYARQVFDEMHKPRIFLWNTLFKGYVR 86

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
             LP +++ ++  M  L  ++PD F +  +VKA   LG    G  +HA  V   F    +
Sbjct: 87  NQLPFESLLLYKKMRDLG-VRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGI 145

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V + LV MY K G  ++A  +F+S++                               V++
Sbjct: 146 VATELVMMYMKFGELSSAEFLFESMQ-------------------------------VKD 174

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           L  W A ++  VQ+ N   A   F +M  + V   D   + S++ AC     LE+G++I+
Sbjct: 175 LVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQF-DSFTVVSMLSACGQLGSLEIGEEIY 233

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
                   +  + + NA +DM+ KC +  AA+ +F  M++++VVSW+++IVG A +G + 
Sbjct: 234 DRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSR 293

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE--DYGITPSLQHYT 379
           E L L+  M + G++PN VTF+G++ ACSH GLV +G++ F  M++  D  + P  +HY 
Sbjct: 294 EALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYA 353

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++DLL RSG L+EA   IK MP EPD   W ALL AC  HR+  +G +VA+ L+   P+
Sbjct: 354 CMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPD 413

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
             S ++LLSN+YA+A  W  V KVR  M  +  KK   YS +EF    H F  G+ SHP 
Sbjct: 414 IGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQ 473

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
              I+E L E+  ++++ GYVPDT SV HD+E +EKE  L  HSE+LA+A+GL+K  PG 
Sbjct: 474 SKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSEKLAIAFGLIKGRPGH 533

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +RV+KNLR C DCH   K +S +T  EI++RD  R+HHF++G CSC +FW
Sbjct: 534 PIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKEFW 584


>gi|242037817|ref|XP_002466303.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
 gi|241920157|gb|EER93301.1| hypothetical protein SORBIDRAFT_01g005310 [Sorghum bicolor]
          Length = 606

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/564 (37%), Positives = 321/564 (56%), Gaps = 41/564 (7%)

Query: 54  VQYAHHLLEEMPQ-RDHVSWASILTAYNQANLPQKT-----ISIFSTMLALDKLQPDHFV 107
           + YA  + + +P   D V + ++L  Y +++ P  +     + +F  ML  + + PD + 
Sbjct: 77  LAYARQVFDRVPHPADAVWYNTLLRGYARSSNPSSSEAAAAVRVFVRMLE-EGVAPDTYT 135

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           F SL+KAC +  A   G+Q HA  V     D D V+ +L++MYA+CG    AR +F    
Sbjct: 136 FVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTD 195

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
               VS+ AM++A  RS R  +A+ +F                                E
Sbjct: 196 GGCVVSYNAMIAAAVRSSRPGEALVLFR-------------------------------E 224

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M+ +G+      V+ S++ ACA    LELG+ +H  V  +G  S + +S A++DMYAKC 
Sbjct: 225 MQGKGLKPTSVTVI-SVLSACALLGALELGRWVHDYVRKIGLGSLVKVSTALIDMYAKCG 283

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            +  A D+F  M  KD  +W+ +IV  A HG   E ++L++EM   G+KP+++TF+G++Y
Sbjct: 284 SLEDAIDVFQGMESKDRQAWSVMIVAYANHGYGREAISLFEEMKKEGMKPDDITFLGVLY 343

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           ACSH GLV +G + F  M +D+GI P ++HY C+ DLL+RSG L+ A   I  +P  P  
Sbjct: 344 ACSHSGLVSEGLQYFDDM-KDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTP 402

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
             W  LLSAC  H + E+G RV   +L L       Y++ SN+ A+   W+ ++ VRKLM
Sbjct: 403 ILWRTLLSACGGHGDFELGKRVFERILKLDDSHGGDYVIFSNLCANTGYWEEMNMVRKLM 462

Query: 468 SVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
           S   V K PG S IE     H F+AG+  HP   E  +++ E+  ++K  GYVP+TS V 
Sbjct: 463 SEKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYVPNTSHVF 522

Query: 528 H-DMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKR 586
           H +M ++EK   L +HSE+LA+A+GLL + PG  LRVVKNLRVC DCH + K++S +  R
Sbjct: 523 HVEMGEEEKAISLKYHSEKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKLVSMVFNR 582

Query: 587 EIVVRDATRYHHFKDGKCSCNDFW 610
            I++RD  R+HHF++G CSC D+W
Sbjct: 583 RIILRDLNRFHHFEEGICSCGDYW 606



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 136/323 (42%), Gaps = 46/323 (14%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L+ CA  +     +  HA  +KLG   +  +  TLI+ Y +C   + A  +     
Sbjct: 136 FVSLLKACAAARAGEEGRQAHALAVKLGAADHDYVRPTLINMYAECGDARAARVMFGGTD 195

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
               VS+ +++ A  +++ P + + +F  M     L+P      S++ AC  LGA  LG+
Sbjct: 196 GGCVVSYNAMIAAAVRSSRPGEALVLFREMQG-KGLKPTSVTVISVLSACALLGALELGR 254

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            VH             V ++L+DMYAKCG   +A  VF  ++ K+  +W+ M+ AYA  G
Sbjct: 255 WVHDYVRKIGLGSLVKVSTALIDMYAKCGSLEDAIDVFQGMESKDRQAWSVMIVAYANHG 314

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             ++A+ +FE                               EM++EG+   D +    ++
Sbjct: 315 YGREAISLFE-------------------------------EMKKEGMK-PDDITFLGVL 342

Query: 246 GACANFAVLELGKQI------HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
            AC++  ++  G Q       HG+V  + +  C      + D+ A+   +  A      +
Sbjct: 343 YACSHSGLVSEGLQYFDDMKDHGIVPGIKHYGC------VTDLLARSGQLERAYKFIDEL 396

Query: 300 R-RKDVVSWTSIIVGTAQHGQAE 321
                 + W +++     HG  E
Sbjct: 397 PINPTPILWRTLLSACGGHGDFE 419


>gi|296081589|emb|CBI20594.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/505 (40%), Positives = 301/505 (59%), Gaps = 37/505 (7%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            PD F F S++KAC  L     G+++HA      F  +  V++SL+DMY K G    AR 
Sbjct: 89  NPDEFTFTSVLKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARH 148

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +FD + +++                             RN+  W A+++G  Q+    DA
Sbjct: 149 LFDEMFVRD-----------------------------RNVVCWNAMIAGYAQNEKYSDA 179

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV----IALGYESCLFISN 277
              F  M++ G  + + + L S++ ACA+   L+LGK I G +    +ALG    LF+ N
Sbjct: 180 IEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWIDGFISRREMALG----LFLGN 235

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           A+ DMYAKC  I  A+ +F +M  +DV+SW+ II G A +G A+E    + EM+  G KP
Sbjct: 236 ALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCGEKP 295

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           N+V F+GL+ AC+H GLV KG   F +M ++YG++P ++HY C++DLLSR+G LD+AE++
Sbjct: 296 NDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEHYGCVVDLLSRAGELDKAEDM 355

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           I +MP +P+   W ALL  C+ +R++  G RV  H+L L  +   SY+ L+NVY+S    
Sbjct: 356 ISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQHILELDSDHSGSYVYLANVYSSMGRL 415

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
              +K R  M    V K PG S+IE     H F+ G+ SHP  ++I+ ++ EL  +MK  
Sbjct: 416 DDAAKCRLRMRENGVLKTPGCSWIEVDNTVHEFFMGDLSHPESNKIYSMIRELMWKMKLA 475

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GY P T  V+H ++++EKE  L  HSE+LA+A+GL+ +  GT +RVVKNLR+C DCH   
Sbjct: 476 GYKPKTDLVVHSIDEEEKEDALSIHSEKLAIAFGLISTSEGTTIRVVKNLRICNDCHDAA 535

Query: 578 KMISRITKREIVVRDATRYHHFKDG 602
           K+IS I KREI+VRD +R+HHFKDG
Sbjct: 536 KIISGIVKREIIVRDRSRFHHFKDG 560



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 86/187 (45%), Gaps = 2/187 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA     +  + +HA + K G      + N+LID Y K   +  A HL +EM  RD 
Sbjct: 99  LKACAGLAHVVNGQKIHAMVTKQGFESNLFVRNSLIDMYFKAGYLLLARHLFDEMFVRDR 158

Query: 70  --VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
             V W +++  Y Q       I +F  M     + P+     S++ AC  LGA  LGK +
Sbjct: 159 NVVCWNAMIAGYAQNEKYSDAIEVFRMMQQFGGVVPNDVTLVSVLPACAHLGALDLGKWI 218

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
                         + ++L DMYAKCG    AR VF+ ++ ++ +SW+ ++   A  G  
Sbjct: 219 DGFISRREMALGLFLGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHA 278

Query: 188 KDAMEIF 194
            +A   F
Sbjct: 279 DEAFGCF 285



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 71/161 (44%), Gaps = 12/161 (7%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L N L D Y KC  +  A  +  +M +RD +SW+ I+          +    F  ML   
Sbjct: 233 LGNALADMYAKCGCITEARRVFNKMEERDVISWSIIICGLAMYGHADEAFGCFYEMLDCG 292

Query: 100 KLQPDHFVFASLVKACGSLGATRLG----KQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
           + +P+  VF  L+ AC   G  + G      +   + +SP  +       +VD+ ++ G 
Sbjct: 293 E-KPNDVVFMGLLTACTHAGLVKKGLNCFNTMDKEYGVSPKVEH---YGCVVDLLSRAGE 348

Query: 156 PNNARAVFDSIKLK-NSVSWTAMLSA---YARSGRKKDAME 192
            + A  +  S+ +K N + W A+L     Y  SGR +  ++
Sbjct: 349 LDKAEDMISSMPMKPNVIIWGALLGGCRIYRDSGRGQRVVQ 389


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/605 (34%), Positives = 341/605 (56%), Gaps = 31/605 (5%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPL-PNTLIDAYGKCDLVQYAHHLLEEMP 65
           L  L VC+       ++ LHA +++ GLH  G + PN LI AYG+C  + +A  + + + 
Sbjct: 275 LSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGIC 334

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            +   SW +++ A+ Q       I +F  M      +PD F   SL+ ACG+L     GK
Sbjct: 335 SKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGK 394

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
             H   + +    D  ++ SL+ +Y +CG  + AR +FD+++ K+ VSW  M++ Y+++G
Sbjct: 395 AAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNG 454

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
              +++++F +   +    W +L                              L  +S +
Sbjct: 455 LPGESLQLFREMQSKKGGHWPSL------------------------------LAATSAL 484

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            AC+    + LGK++H   +        F+S++I+DMY+KC  +  A+  F R++ KD V
Sbjct: 485 VACSELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAV 544

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SWT +I G A +G+ +E + LYD+M   G++P+  T++GL+ AC H G++  G   F+ M
Sbjct: 545 SWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLMACGHAGMLEDGLCFFQEM 604

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
                I   L+HY C++ +LSR+G   +A  L++ MP EPD    +++LSAC  H   E+
Sbjct: 605 RNLPKIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDAKILSSVLSACHMHGEVEL 664

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G +VA+ LL L+P     Y+L SN+YA +  W  + KVRK++    V KEPG S+I+   
Sbjct: 665 GKKVADKLLELEPHKAEHYVLASNMYAGSRQWDEMRKVRKMLRDAGVAKEPGCSWIDIAG 724

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             + F AGE S P   ++ ++   L+ +++  GY PDT+ +LH++E++EK   L WHSE+
Sbjct: 725 KVYSFVAGENSLPEMHKVRKMWYSLEEKIRAAGYAPDTTVMLHELEEEEKVEALRWHSEK 784

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
            A+A+GLL++   T +RV KN+R+C DCH   K+IS++  REIVVRD  R+HHF+DG CS
Sbjct: 785 QAIAFGLLRTAGPTKVRVFKNIRMCKDCHNAAKLISKVADREIVVRDKKRFHHFRDGLCS 844

Query: 606 CNDFW 610
           C D+W
Sbjct: 845 CGDYW 849



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 176/402 (43%), Gaps = 43/402 (10%)

Query: 23  KTLHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           + +HA   KLGL    P + N+L+  YG+C  V  A  + E M  R+ VSW +++ A   
Sbjct: 83  RQVHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAAVAD 142

Query: 82  ANLPQKTISIFSTMLA--LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
              P++ + +F   L        PD     +++  C +L     G+ VH   V S +   
Sbjct: 143 ---PRRGLELFRDCLEDLGGTAAPDEATLVTVLPMCAALAWPETGRAVHGLAVKSGWDAA 199

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKL---KNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             V + LVDMYAKCG   +A   F        +N VSW  ML  YAR+G    A  +  +
Sbjct: 200 PRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLRE 259

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
                                        ++M   GV   D + + S++  C+    L  
Sbjct: 260 -----------------------------MQMEERGVP-ADEITMLSVLPVCSGLPELAK 289

Query: 257 GKQIHGLVIALG-YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTA 315
            +++H  V+  G + +   + NA++  Y +C  ++ A  +F  +  K V SW ++I   A
Sbjct: 290 LRELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHA 349

Query: 316 QHGQAEETLALYDEMVSA-GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
           Q+G+A   + L+ EM +A G KP+  +   L+ AC ++  +  G+     ++ + G+   
Sbjct: 350 QNGEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHGKAAHGFILRN-GLEKD 408

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
                 LL +  + G    A  L  A+  E DE +W  +++ 
Sbjct: 409 SFIRVSLLSVYIQCGRESLARVLFDAVE-EKDEVSWNTMIAG 449



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 123/494 (24%), Positives = 203/494 (41%), Gaps = 95/494 (19%)

Query: 72  WASILTAYNQANLPQKTISIFSTMLAL-DKLQPDHFVFASLVKACGSLGATRLGKQVHAC 130
           W  +L   ++A      ++I   +LA  D + PD F     +K+C        G+QVHA 
Sbjct: 33  WNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKSC----RGDDGRQVHAV 88

Query: 131 FVLSPFCDDD-VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                  D D  V +SLV MY +C                               GR  D
Sbjct: 89  AAKLGLADGDPFVGNSLVSMYGRC-------------------------------GRVDD 117

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A ++FE    RNL  W AL++ +   R  ++ F   +E    G    D   L +++  CA
Sbjct: 118 AEKVFEGMAGRNLVSWNALMAAVADPRRGLELFRDCLE-DLGGTAAPDEATLVTVLPMCA 176

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM---RRKDVVS 306
             A  E G+ +HGL +  G+++   +SN +VDMYAKC ++  A+  F        ++VVS
Sbjct: 177 ALAWPETGRAVHGLAVKSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVS 236

Query: 307 WTSIIVGTAQHGQAEETLALYDEMV--SAGVKPNEVTFVGLIYACS-----------HVG 353
           W  ++ G A++G+A     L  EM     GV  +E+T + ++  CS           H  
Sbjct: 237 WNVMLGGYARNGEAGAAFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLRELHAF 296

Query: 354 LVGKGRKLFKSMIED-----YGITPSLQH---------------YTCLLDLLSRSGHLDE 393
           +V +G  L   M+ +     YG    L H               +  L+   +++G    
Sbjct: 297 VVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQNGEASA 356

Query: 394 AENLIKAMPF----EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS- 448
           A  L + M      +PD  +  +LL AC + ++   G + A+  +     +  S+I +S 
Sbjct: 357 AIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLHG-KAAHGFILRNGLEKDSFIRVSL 415

Query: 449 -NVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELL 507
            +VY         S  R L   +E K E  ++ +          AG + + L  E  +L 
Sbjct: 416 LSVYIQCG---RESLARVLFDAVEEKDEVSWNTM---------IAGYSQNGLPGESLQLF 463

Query: 508 TELDAEMKRRGYVP 521
            E+ +  K+ G+ P
Sbjct: 464 REMQS--KKGGHWP 475


>gi|356522333|ref|XP_003529801.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 650

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/635 (33%), Positives = 344/635 (54%), Gaps = 53/635 (8%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYG---KCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           +K +H+  IK+GL    PL    + A+    +   + YAH + + +P      W +++  
Sbjct: 23  LKQIHSHTIKMGLSS-DPLFRNRVIAFCCAHESGNMNYAHQVFDTIPHPSMFIWNTMIKG 81

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
           Y++ + P+  +S++  ML    ++PD F F   +K      A + GK++    V   F  
Sbjct: 82  YSKISHPENGVSMYLLMLT-SNIKPDRFTFPFSLKGFTRDMALQHGKELLNHAVKHGFDS 140

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR--------------- 183
           +  V+ + + M++ CG+ + A  VFD       V+W  MLS Y R               
Sbjct: 141 NLFVQKAFIHMFSLCGIVDLAHKVFDMGDACEVVTWNIMLSGYNRVKQFKISKMLLVLSA 200

Query: 184 ----------------------------SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
                                        G   +A  +F+    R++  WTA++ G ++ 
Sbjct: 201 CSKLKDLEWGKHIFKYINGGIVEHMFAACGEMDEAQGVFDNMKTRDVVSWTAMIDGYLRM 260

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI 275
            + I A   F EM+   V   D   + SI+ ACA    LELG+ +   +     ++  F+
Sbjct: 261 NHFIGALALFREMQMSNVK-PDEFTMVSILIACALLGALELGEWVKTCIDKNSNKNDSFV 319

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
            NA+VDMY KC ++  AK +F  M +KD  +WT++IVG A +G  EE LA++  M+ A V
Sbjct: 320 GNALVDMYFKCGNVRKAKKVFKEMYQKDKFTWTTMIVGLAINGHGEEALAMFSNMIEASV 379

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
            P+E+T++G++ AC    +V KG+  F +M   +GI P++ HY C++DLL   G L+EA 
Sbjct: 380 TPDEITYIGVLCAC----MVDKGKSFFTNMTMQHGIKPTVTHYGCMVDLLGCVGCLEEAL 435

Query: 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
            +I  MP +P+   W + L AC+ H+N ++    A  +L L+PE+ + Y+LL N+YA++ 
Sbjct: 436 EVIVNMPVKPNSIVWGSPLGACRVHKNVQLADMAAKQILELEPENGAVYVLLCNIYAASK 495

Query: 456 MWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK 515
            W+++ +VRKLM    +KK PG S +E     + F AG+ SHP   EI+  L  +   + 
Sbjct: 496 KWENLCQVRKLMMERGIKKTPGCSLMELNGNVYEFVAGDQSHPQSKEIYAKLENMMQGLI 555

Query: 516 RRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHI 575
           + GY PDTS V  D+ +++KE  L+ HSE+LA+AY L+ S PG  +R+VKNLR+C DCH 
Sbjct: 556 KAGYSPDTSEVFLDLGEEDKETALYRHSEKLAIAYALISSGPGVTIRIVKNLRMCVDCHH 615

Query: 576 VMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + K++S+   RE++V+D TR+HHF+ G CSCN+FW
Sbjct: 616 MAKLVSQAYNRELIVKDKTRFHHFRHGSCSCNNFW 650


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 211/569 (37%), Positives = 319/569 (56%), Gaps = 35/569 (6%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTML--ALDKL 101
           L+D Y K   +  A  + + MP+RD + W ++++  +      + +S+F  M    LD L
Sbjct: 347 LVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLD-L 405

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             +    AS++K+  S  A    +QVHA         D  V + L+D Y KCG  + A  
Sbjct: 406 DVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIK 465

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF   +  + +S T M++A ++    +DA+++F                           
Sbjct: 466 VFKESRSDDIISSTTMMTALSQCDHGEDAIKLF--------------------------- 498

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
               ++M R+G++  D  VLSS++ AC + +  E GKQ+H  +I   + S +F  NA+V 
Sbjct: 499 ----VQMLRKGLE-PDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVY 553

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
            YAKC  I  A   F  +  + +VSW+++I G AQHG  +  L L+  M+  GV PN +T
Sbjct: 554 AYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHIT 613

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
              ++ AC+H GLV   +K F+SM E +GI  + +HY C++D+L R+G L++A  L+  M
Sbjct: 614 LTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNM 673

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           PF+ +   W ALL A + HR+ E+G   A  L +L+PE   +++LL+N YASA MW  ++
Sbjct: 674 PFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASAGMWDEMA 733

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           KVRKLM    VKKEP  S++E     H F  G+ SHP+  +I+  L EL   M + GYVP
Sbjct: 734 KVRKLMKDSNVKKEPAMSWVEIKDKVHTFIVGDKSHPMTRDIYGKLAELGDLMNKAGYVP 793

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           +    LHD+++ EKE  L  HSERLAVA+ L+ +  G  +RV KNLR+C DCH+  K IS
Sbjct: 794 NVEVDLHDVDRSEKELLLSHHSERLAVAFALISTPSGAPIRVKKNLRICRDCHVAFKYIS 853

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I  REI++RD  R+HHF +G CSC D+W
Sbjct: 854 KIVSREIIIRDINRFHHFTNGTCSCGDYW 882



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/397 (30%), Positives = 186/397 (46%), Gaps = 40/397 (10%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LH+ ++K GL       N L+  Y +C L   A  + +E+P   HVSW+S++TAY+   +
Sbjct: 26  LHSHLLKSGL--LAGFSNHLLTLYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSNNGM 83

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P+  +  F  M     +  + F    ++K    +   R G QVHA  V +    D  V +
Sbjct: 84  PRDALLAFRAMRG-RGVPCNEFALPVVLKCAPDV---RFGAQVHALAVATRLVHDVFVAN 139

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +LV +Y   G+ + AR +FD                Y   G +++A+             
Sbjct: 140 ALVAVYGGFGMVDEARRMFDE---------------YVGVGGERNAVS------------ 172

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W  ++S  V++    DA   F EM   G +  +    S +V AC     LE G+Q+HG V
Sbjct: 173 WNTMISAYVKNDQSGDAIGVFREMVWSG-ERPNEFGFSCVVNACTGSRDLEAGRQVHGAV 231

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           +  GYE  +F +NA+VDMY+K  DI  A  +F +M   DVVSW + I G   HG     L
Sbjct: 232 VRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRAL 291

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC--LL 382
            L  +M S+G+ PN  T   ++ AC+  G    GR++   M++          +    L+
Sbjct: 292 ELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVK---AVADFDEFVAVGLV 348

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
           D+ ++ G LD+A  +   MP   D   W AL+S C H
Sbjct: 349 DMYAKHGFLDDARKVFDFMP-RRDLILWNALISGCSH 384



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/399 (24%), Positives = 189/399 (47%), Gaps = 35/399 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  +++ G  +     N L+D Y K   ++ A  + E+MP  D VSW + ++     
Sbjct: 225 RQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTH 284

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + +   M +   L P+ F  +S++KAC   GA  LG+Q+H   V +    D+ V
Sbjct: 285 GHDHRALELLLQMKS-SGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFV 343

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
              LVDMYAK G  ++AR VFD +  ++ + W A++S  +  GR  + + +F +      
Sbjct: 344 AVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHR------ 397

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLSSIVGACANFAVLELGKQIH 261
                                    MR+EG+D+ V+   L+S++ + A+   +   +Q+H
Sbjct: 398 -------------------------MRKEGLDLDVNRTTLASVLKSTASSEAICHTRQVH 432

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
            L   +G  S   + N ++D Y KC  +  A  +F   R  D++S T+++   +Q    E
Sbjct: 433 ALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQCDHGE 492

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           + + L+ +M+  G++P+      L+ AC+ +    +G+++   +I+    T  +     L
Sbjct: 493 DAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQGKQVHAHLIKRQ-FTSDVFAGNAL 551

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           +   ++ G +++A+     +P E    +W+A++     H
Sbjct: 552 VYAYAKCGSIEDADMAFSGLP-ERGIVSWSAMIGGLAQH 589



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 112/457 (24%), Positives = 200/457 (43%), Gaps = 82/457 (17%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEM----PQRDHVSWASILTAYNQANLPQKTISIFSTM 95
           + N L+  YG   +V  A  + +E      +R+ VSW ++++AY + +     I +F  M
Sbjct: 137 VANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVFREM 196

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
           +   + +P+ F F+ +V AC        G+QVH   V + +  D    ++LVDMY+K G 
Sbjct: 197 VWSGE-RPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKLG- 254

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
                     I++                     A  +FE+ P  ++  W A +SG V  
Sbjct: 255 ---------DIEM---------------------AATVFEKMPAADVVSWNAFISGCVTH 284

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI 275
            ++  A    ++M+  G+ + +   LSS++ ACA      LG+QIHG ++    +   F+
Sbjct: 285 GHDHRALELLLQMKSSGL-VPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFV 343

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG- 334
           +  +VDMYAK   +  A+ +F  M R+D++ W ++I G +  G+  E L+L+  M   G 
Sbjct: 344 AVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGL 403

Query: 335 -VKPNEVTFVGLIYACS----------------HVGLVGKGRKLFKSMIE--------DY 369
            +  N  T   ++ + +                 +GL+     +   +I+        DY
Sbjct: 404 DLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSH-VINGLIDSYWKCGQLDY 462

Query: 370 GI-------TPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKH 419
            I       +  +   T ++  LS+  H ++A  L   M     EPD    ++LL+AC  
Sbjct: 463 AIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTS 522

Query: 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
               E G +V  HL+  +          S+V+A  A+
Sbjct: 523 LSAYEQGKQVHAHLIKRQ--------FTSDVFAGNAL 551



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/187 (34%), Positives = 99/187 (52%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+  A  +     + +HA   K+GL     + N LID+Y KC  + YA  + +E    D 
Sbjct: 416 LKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDI 475

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +S  +++TA +Q +  +  I +F  ML    L+PD FV +SL+ AC SL A   GKQVHA
Sbjct: 476 ISSTTMMTALSQCDHGEDAIKLFVQMLR-KGLEPDSFVLSSLLNACTSLSAYEQGKQVHA 534

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +   F  D    ++LV  YAKCG   +A   F  +  +  VSW+AM+   A+ G  K 
Sbjct: 535 HLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKR 594

Query: 190 AMEIFEQ 196
           A+++F +
Sbjct: 595 ALDLFHR 601



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 42/194 (21%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HA +IK          N L+ AY KC  ++ A      +P+R  VSW++++    Q 
Sbjct: 530 KQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQH 589

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ + +F  ML  + + P+H    S++ AC            HA             
Sbjct: 590 GHGKRALDLFHRMLD-EGVAPNHITLTSVLSACN-----------HA------------- 624

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWT-----AMLSAYARSGRKKDAMEIFEQA 197
                      GL ++A+  F+S+K    +  T      M+    R+G+ +DAME+    
Sbjct: 625 -----------GLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNM 673

Query: 198 PVR-NLFLWTALVS 210
           P + N  +W AL+ 
Sbjct: 674 PFQANAAVWGALLG 687


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/613 (35%), Positives = 337/613 (54%), Gaps = 43/613 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLG-LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L  C+  ++  T K LHA  +K G L +   + + L+D Y  C  V     + + M  R 
Sbjct: 305 LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRK 364

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
              W +++T Y Q    ++ + +F  M     L  +    A +V AC   GA    + +H
Sbjct: 365 IGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIH 424

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              V      D  V+++L+DMY+                               R G+  
Sbjct: 425 GFVVKRGLDRDRFVQNALMDMYS-------------------------------RLGKID 453

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM---------RREGVDI-VDP 238
            A  IF +   R+L  W  +++G V S    DA     +M         R   V +  + 
Sbjct: 454 IAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLHKMQILERKASERASRVSLKPNS 513

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
           + L +I+ +CA  + L  GK+IH   I     + + + +A+VDMYAKC  +  ++ +F +
Sbjct: 514 ITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 573

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
           +  ++V++W  I++    HG +++ + +   M+  GVKPNEVTF+ +  ACSH G+V +G
Sbjct: 574 IPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGVKPNEVTFISVFAACSHSGMVNEG 633

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP-TWAALLSAC 417
            K+F +M +DYG+ PS  HY C++DLL R+G + EA  LI  +P   D+   W++LL AC
Sbjct: 634 LKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGAC 693

Query: 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPG 477
           + H N E+G   A +L+ L+P   S Y+LL+N+Y+SA +W   ++VR+ M    V+KEPG
Sbjct: 694 RIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEPG 753

Query: 478 YSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKER 537
            S+IE G   H F AG++SHP  +++   L  L   M++ GY+PDTS VLH++E+ EKE 
Sbjct: 754 CSWIEHGDEVHKFVAGDSSHPQSEKLRGYLETLWERMRKEGYIPDTSCVLHNVEEDEKEI 813

Query: 538 QLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYH 597
            L  HSE+LA+A+G+L + PGT++RV KNLRVC DCH+  K IS++  REI++RD  R+H
Sbjct: 814 LLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKVVDREIILRDVRRFH 873

Query: 598 HFKDGKCSCNDFW 610
           HFK+G CSC D+W
Sbjct: 874 HFKNGTCSCGDYW 886



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 194/418 (46%), Gaps = 49/418 (11%)

Query: 20  LTVKTLHAQIIKLG-LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           L  K +HA  ++ G L+ +  + NTL+  YGK   +  +  LL     RD V+W ++L++
Sbjct: 215 LMGKQVHAYGLRKGELNSF--IINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSS 272

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
             Q     + +     M+ L+ ++PD F  +S++ AC  L   R GK++HA  + +   D
Sbjct: 273 LCQNEQFLEALEYLREMV-LEGVEPDGFTISSVLPACSHLEMLRTGKELHAYALKNGSLD 331

Query: 139 DD-VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
           ++  V S+LVDMY  C    +   VFD +  +    W AM++ YA               
Sbjct: 332 ENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYA--------------- 376

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
                           Q+  + +A   FIEM      + +   ++ +V AC         
Sbjct: 377 ----------------QNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKK 420

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           + IHG V+  G +   F+ NA++DMY++   I  AK IFG+M  +D+V+W +II G    
Sbjct: 421 EAIHGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFS 480

Query: 318 GQAEETLALYDEM-----------VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
            + E+ L +  +M               +KPN +T + ++ +C+ +  + KG+++    I
Sbjct: 481 ERHEDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAI 540

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           ++  +   +   + L+D+ ++ G L  +  +   +P   +  TW  ++ A   H N++
Sbjct: 541 KN-NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIR-NVITWNVIVMAYGMHGNSQ 596



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 185/403 (45%), Gaps = 48/403 (11%)

Query: 23  KTLHAQIIKLGLHQYG----PLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           K +HA + K G   YG     + NTL++ Y KC      + + + + +R+ VSW S++++
Sbjct: 113 KQIHAHVYKFG---YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISS 169

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR---LGKQVHACFVLSP 135
                  +  +  F  ML  D ++P  F   S+  AC +        +GKQVHA + L  
Sbjct: 170 LCSFEKWEMALEAFRCMLDED-VEPSSFTLVSVALACSNFPMPEGLLMGKQVHA-YGLRK 227

Query: 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
              +  + ++LV MY K G   +++ +  S + ++ V+W  +LS+               
Sbjct: 228 GELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSS--------------- 272

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
                           L Q+   ++A     EM  EGV+  D   +SS++ AC++  +L 
Sbjct: 273 ----------------LCQNEQFLEALEYLREMVLEGVE-PDGFTISSVLPACSHLEMLR 315

Query: 256 LGKQIHGLVIALG-YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
            GK++H   +  G  +   F+ +A+VDMY  C  +++   +F  M  + +  W ++I G 
Sbjct: 316 TGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGY 375

Query: 315 AQHGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
           AQ+   EE L L+ EM  SAG+  N  T  G++ AC   G   K ++     +   G+  
Sbjct: 376 AQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSK-KEAIHGFVVKRGLDR 434

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
                  L+D+ SR G +D A+ +   M  + D  TW  +++ 
Sbjct: 435 DRFVQNALMDMYSRLGKIDIAKRIFGKME-DRDLVTWNTIITG 476



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 138/294 (46%), Gaps = 38/294 (12%)

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA-C 130
           W  +L +  ++NL ++ +  +  M+ L  ++PD+F F +L+KA   L    LGKQ+HA  
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLG-IKPDNFAFPALLKAVADLQDMDLGKQIHAHV 119

Query: 131 FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
           +      D   V ++LV++Y KCG       VFD I  +N VS                 
Sbjct: 120 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVS----------------- 162

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
                         W +L+S L        A  +F  M  E V+      L S+  AC+N
Sbjct: 163 --------------WNSLISSLCSFEKWEMALEAFRCMLDEDVE-PSSFTLVSVALACSN 207

Query: 251 FAVLE---LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
           F + E   +GKQ+H   +  G E   FI N +V MY K   + ++K + G    +D+V+W
Sbjct: 208 FPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTW 266

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
            +++    Q+ Q  E L    EMV  GV+P+  T   ++ ACSH+ ++  G++L
Sbjct: 267 NTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSHLEMLRTGKEL 320



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 123/277 (44%), Gaps = 37/277 (13%)

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W  L+   V+S    +A  ++I+M   G+   D     +++ A A+   ++LGKQIH  V
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIK-PDNFAFPALLKAVADLQDMDLGKQIHAHV 119

Query: 265 IALGYE-SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
              GY    + ++N +V++Y KC D  A   +F R+  ++ VSW S+I       + E  
Sbjct: 120 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 179

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVG-----LVGKG------RK------LFKSMI 366
           L  +  M+   V+P+  T V +  ACS+       L+GK       RK      +  +++
Sbjct: 180 LEAFRCMLDEDVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINTLV 239

Query: 367 EDYGITPSLQHYTCLL------DLLSRS---GHLDEAENLIKAMPF---------EPDEP 408
             YG    L     LL      DL++ +     L + E  ++A+ +         EPD  
Sbjct: 240 AMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGF 299

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYI 445
           T +++L AC H      G  +  + L     D +S++
Sbjct: 300 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 336


>gi|296089786|emb|CBI39605.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/595 (36%), Positives = 329/595 (55%), Gaps = 47/595 (7%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQY-----AHHLLEEMPQRDHVSWASIL 76
           +K  HA I++ G  Q   +  +L+ +Y      +Y     +  + + + + +   W  ++
Sbjct: 71  LKQAHALILRTGHLQDSYIAGSLVKSYANVSTNRYLSFESSLRVFDFVRKPNVFLWNCMI 130

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
               + N P K I ++  M+ +   +P+ + + +++KAC   G    G QVHA  V    
Sbjct: 131 KVCIENNEPFKAILLYYEMM-VAHFRPNKYTYPAVLKACSDAGVVAEGVQVHAHLVKHGL 189

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             D  + SS + MYA  G    AR + D       V    M     R G   +A+EIF Q
Sbjct: 190 GGDGHILSSAIRMYASFGRLVEARRILDD--KGGEVDAVCMPD---RKGCFMEALEIFHQ 244

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
                                          M++E +      VL S++ ACAN   L+ 
Sbjct: 245 -------------------------------MQKEKIR-PRKFVLPSVLSACANLGALDQ 272

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           G+ IH        +    +  ++VDMYAKC  I  A ++F +M  K+V SW ++I G A 
Sbjct: 273 GRWIHTYAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAM 332

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           HG+AE+ + L+ +M    + PNE+TFVG++ AC+H GLV KG  +F SM ++YG+ P ++
Sbjct: 333 HGRAEDAIDLFSKM---DINPNEITFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQIE 389

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
           HY C++DLL R+G L EAE ++ ++P EP    W ALL AC+ H N E+G RV   LL L
Sbjct: 390 HYGCIVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLEL 449

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS-HIFYAGET 495
           +P++   Y LLSN+YA A  W+ V +VRKLM    +K  PG S I+ G+G  H F  G+ 
Sbjct: 450 EPQNSGRYTLLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDG 509

Query: 496 SHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKS 555
           SHP   +I+++L ++   ++  GY PD S VL D++++EKE  ++ HSE+LA+ +GL+ +
Sbjct: 510 SHPQVKDIYQMLDKVKERLQMEGYEPDPSQVLFDIDEEEKETAVWQHSEKLAIGFGLINT 569

Query: 556 VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            PGT +R+VKNLRVC DCH   K+IS++  REI+VRD  RYHHF++G CSC DFW
Sbjct: 570 SPGTTIRIVKNLRVCEDCHSATKLISQVYNREIIVRDRIRYHHFRNGACSCKDFW 624



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 160/372 (43%), Gaps = 63/372 (16%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+   +      +HA ++K GL   G + ++ I  Y     +  A  +L+     D 
Sbjct: 165 LKACSDAGVVAEGVQVHAHLVKHGLGGDGHILSSAIRMYASFGRLVEARRILD-----DK 219

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
                 +   ++     + + IF  M   +K++P  FV  S++ AC +LGA   G+ +H 
Sbjct: 220 GGEVDAVCMPDRKGCFMEALEIFHQMQK-EKIRPRKFVLPSVLSACANLGALDQGRWIHT 278

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               +    D V+ +SLVDMYAKCG  + A  VF+ +  K   SW AM+   A  GR +D
Sbjct: 279 YAKRNSIQLDGVLGTSLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAED 338

Query: 190 AMEIFEQAPVR-NLFLWTALVS-----GLVQSRNEIDAFYSFIEMRRE-GVD-------- 234
           A+++F +  +  N   +  +++     GLVQ          F  MR+E GV+        
Sbjct: 339 AIDLFSKMDINPNEITFVGVLNACAHGGLVQK-----GLTIFNSMRKEYGVEPQIEHYGC 393

Query: 235 IVD-----------------------PLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271
           IVD                       P V  +++GAC     +ELG+++  +++ L  ++
Sbjct: 394 IVDLLGRAGLLTEAEKVVSSIPTEPTPAVWGALLGACRKHGNVELGERVGKILLELEPQN 453

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV--VSWTSI-----------IVGTAQHG 318
               +  + ++YAK        ++   M+ + +     TSI           I+G   H 
Sbjct: 454 SGRYT-LLSNIYAKAGRWEEVGEVRKLMKERGIKTTPGTSIIDLGRGEVHKFIIGDGSHP 512

Query: 319 QAEETLALYDEM 330
           Q ++   + D++
Sbjct: 513 QVKDIYQMLDKV 524


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/607 (35%), Positives = 335/607 (55%), Gaps = 54/607 (8%)

Query: 55  QYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA 114
           + A  L +++  RD +SW S+++ Y    L ++ + I+  M+ L  +  D     S++  
Sbjct: 202 ESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLG-IDVDLATIISVLVG 260

Query: 115 CGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSW 174
           C + G   LGK VH+  + S F       ++L+DMY+KCG  + A  VF+ +  +N VSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 175 TAMLSAYARSGRKKDAMEIFEQAP------------------------------------ 198
           T+M++ Y R G    A+ + +Q                                      
Sbjct: 321 TSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIKA 380

Query: 199 ---VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-----------DPLVLSSI 244
                NLF+  AL+    +  +   A   F  M  +  DI+           D   ++ I
Sbjct: 381 NNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVK--DIISWNTMVGELKPDSRTMACI 438

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + ACA+ + LE GK+IHG ++  GY S   ++NA+VD+Y KC  +  A+ +F  +  KD+
Sbjct: 439 LPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           VSWT +I G   HG   E +A ++EM  AG++P+EV+F+ ++YACSH GL+ +G + F  
Sbjct: 499 VSWTVMIAGYGMHGYGNEAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYI 558

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           M  D+ I P L+HY C++DLLSR+G+L +A   I+ +P  PD   W ALL  C+ + + E
Sbjct: 559 MKNDFNIEPKLEHYACMVDLLSRTGNLSKAYKFIETLPIAPDATIWGALLCGCRIYHDIE 618

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +  +VA  +  L+PE+   Y+LL+N+YA A   + V ++R+ +    ++K PG S+IE  
Sbjct: 619 LAEKVAERVFELEPENTGYYVLLANIYAEAEKREEVKRMREKIGKKGLRKNPGCSWIEIK 678

Query: 485 KGSHIFYAG-ETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
              ++F +G  +SHP   +I  LL ++  +MK  GY P T   L + ++ +KE  L  HS
Sbjct: 679 GRVNLFVSGNNSSHPHSKKIESLLKKMRRKMKEEGYFPKTKYALINADEMQKEMALCGHS 738

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           E+LA+A+GLL   P   +RV KNLRVCGDCH + K +S+ T+REIV+RD+ R+HHFKDG 
Sbjct: 739 EKLAMAFGLLTLPPRKTIRVTKNLRVCGDCHEMAKFMSKETRREIVLRDSNRFHHFKDGY 798

Query: 604 CSCNDFW 610
           CSC  FW
Sbjct: 799 CSCRGFW 805



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/361 (27%), Positives = 172/361 (47%), Gaps = 35/361 (9%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
            + S+++ C  L +   GK+VH+    +    D+ +   LV  YA CG     R VFD++
Sbjct: 101 TYGSVLQLCAGLKSLTDGKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTM 160

Query: 167 KLKNSVSWTAMLSAYARSG--------------------RKKDAMEIFEQAPVRNLFLWT 206
           + KN   W  M+S YA+ G                    R + A E+F++   R++  W 
Sbjct: 161 EKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWN 220

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
           +++SG V +         + +M   G+D+    ++S +VG CAN   L LGK +H L I 
Sbjct: 221 SMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVLVG-CANSGTLSLGKAVHSLAIK 279

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
             +E  +  SN ++DMY+KC D+  A  +F +M  ++VVSWTS+I G  + G ++  + L
Sbjct: 280 SSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIIL 339

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
             +M   GVK + V    +++AC+  G +  G+ +    I+   +  +L     L+D+ +
Sbjct: 340 LQQMEKEGVKLDVVAITSILHACARSGSLDNGKDV-HDYIKANNMASNLFVCNALMDMYA 398

Query: 387 RSGHLDEAENLIKAM-------------PFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
           + G ++ A ++   M               +PD  T A +L AC      E G  +  ++
Sbjct: 399 KCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACILPACASLSALERGKEIHGYI 458

Query: 434 L 434
           L
Sbjct: 459 L 459



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/294 (25%), Positives = 122/294 (41%), Gaps = 51/294 (17%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           CA        K +H+  IK    +     NTL+D Y KC  +  A  + E+M +R+ VSW
Sbjct: 261 CANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSW 320

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            S++  Y +       I +   M   + ++ D     S++ AC   G+   GK VH    
Sbjct: 321 TSMIAGYTRDGWSDGAIILLQQM-EKEGVKLDVVAITSILHACARSGSLDNGKDVHDYIK 379

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAM--------------- 177
            +    +  V ++L+DMYAKCG    A +VF ++ +K+ +SW  M               
Sbjct: 380 ANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGELKPDSRTMACIL 439

Query: 178 -----LSA-----------------------------YARSGRKKDAMEIFEQAPVRNLF 203
                LSA                             Y + G    A  +F+  P ++L 
Sbjct: 440 PACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLV 499

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
            WT +++G        +A  +F EMR  G++  D +   SI+ AC++  +LE G
Sbjct: 500 SWTVMIAGYGMHGYGNEAIATFNEMRDAGIE-PDEVSFISILYACSHSGLLEQG 552



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 1/115 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K +H  I++ G      + N L+D Y KC ++  A  L + +P +D 
Sbjct: 439 LPACASLSALERGKEIHGYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDL 498

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           VSW  ++  Y       + I+ F+ M     ++PD   F S++ AC   G    G
Sbjct: 499 VSWTVMIAGYGMHGYGNEAIATFNEMRDAG-IEPDEVSFISILYACSHSGLLEQG 552


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/572 (36%), Positives = 322/572 (56%), Gaps = 34/572 (5%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           + N L+D Y K D +  A +L +EMP+ D VS+  I+T Y      +K+  +F  +    
Sbjct: 281 VANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGT- 339

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
                +F FA+++          +G+Q HA  V++    +  V ++LVDMYAKC      
Sbjct: 340 SFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAVSEVQVGNALVDMYAKCE----- 394

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
                                     + +DA  IF     RN   WTA++S  VQ     
Sbjct: 395 --------------------------KFEDANRIFANLAYRNSVPWTAIISIYVQKGFHE 428

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           +A   F EM RE V   D    +S + A AN A + LGKQ+H  VI LG  S +F  + +
Sbjct: 429 EALKMFKEMNRENVH-GDQATFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVL 487

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           VDMYA C  +  A ++F  M  +++V W ++I   +Q+G AE T + + +M+ +G+ P+ 
Sbjct: 488 VDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDS 547

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           V+F+ ++ ACSH GLV K    F SM + Y + P  +HY  ++D+L RSG  +EAENLI 
Sbjct: 548 VSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLIS 607

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP-EDPSSYILLSNVYASAAMWQ 458
            MPFEPDE  W+++L++C+ H+N ++  + A+ L  +    D ++Y+ +SN+YA A  W+
Sbjct: 608 EMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWE 667

Query: 459 HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
           + +KV+K M    VKK   YS++E     H+F A + +HP  ++I   +  L   M + G
Sbjct: 668 NAAKVKKAMRERGVKKVTAYSWVEIDHRVHVFTANDRTHPQTEQIRRKINSLVELMDKEG 727

Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
           Y PDTS  L +++++ K   L +HSERLA+A+ L+ +  G+ + ++KNLR C DCH  +K
Sbjct: 728 YKPDTSCTLQNVDEEMKIESLKYHSERLAIAFALINTPEGSPIIIMKNLRACVDCHAAIK 787

Query: 579 MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +IS+I  REI VRD++R+HHF+DG CSC D+W
Sbjct: 788 VISKIVGREITVRDSSRFHHFRDGSCSCGDYW 819



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 189/403 (46%), Gaps = 35/403 (8%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           V  +H+ II+ G      + N+L+D+Y K   +  A  L  EMP +D VS+  ++T Y +
Sbjct: 162 VLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTK 221

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
               ++ + +F  M  +D  QP  F FA+++           G+Q+H   + + +  D  
Sbjct: 222 YGFREEALKLFMQMRNMD-FQPSGFTFAAMLGMSVGSEDVIFGQQIHGLAIKTSYVWDIF 280

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V ++L+D Y+K    + A+ +FD +   + VS+  +++ YA +G+ + + ++F++     
Sbjct: 281 VANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKR----- 335

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                  + G    R                         ++++   A    L +G+Q H
Sbjct: 336 -------LQGTSFDRKN--------------------FPFATMLSVAAIELNLSMGRQTH 368

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
              +     S + + NA+VDMYAKC     A  IF  +  ++ V WT+II    Q G  E
Sbjct: 369 AQAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHE 428

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L ++ EM    V  ++ TF   + A +++  V  G++L  S+I   G+  S+   + L
Sbjct: 429 EALKMFKEMNRENVHGDQATFASTLKASANLASVSLGKQLHSSVIR-LGLLSSVFSGSVL 487

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           +D+ +  G + +A  + K MP + +   W AL+SA   + + E
Sbjct: 488 VDMYANCGSMKDAIEVFKEMP-DRNIVCWNALISAYSQNGDAE 529



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 170/374 (45%), Gaps = 35/374 (9%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N ++  Y K   +  A  L E M  R+ VSW  ++  Y+Q N P++  ++++ M     +
Sbjct: 81  NMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEM-CRSGV 139

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PDH  FA+L+         +   Q+H+  +   F    +V +SLVD Y K    + A  
Sbjct: 140 KPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQ 199

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +F  +  K+SVS+  M++ Y + G +++A+++F Q  +RN+       SG          
Sbjct: 200 LFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQ--MRNMDFQP---SGFT-------- 246

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
           F + + M     D++                    G+QIHGL I   Y   +F++NA++D
Sbjct: 247 FAAMLGMSVGSEDVI-------------------FGQQIHGLAIKTSYVWDIFVANALLD 287

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
            Y+K   I  AK++F  M   D VS+  II G A +GQ E++  L+  +           
Sbjct: 288 FYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFP 347

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F  ++   +    +  GR+     +    ++  +Q    L+D+ ++    ++A  +   +
Sbjct: 348 FATMLSVAAIELNLSMGRQTHAQAVVTTAVS-EVQVGNALVDMYAKCEKFEDANRIFANL 406

Query: 402 PFEPDEPTWAALLS 415
            +    P W A++S
Sbjct: 407 AYRNSVP-WTAIIS 419



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 122/251 (48%), Gaps = 16/251 (6%)

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           AR +FD +  +N+ S   M+S Y +S     A E+FE    RN   WT ++ G  Q+   
Sbjct: 65  ARQLFDEMPYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQP 124

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            +AF  + EM R GV   D +  ++++    +   L+   QIH  +I  G+ + L + N+
Sbjct: 125 KEAFNLYTEMCRSGVK-PDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNS 183

Query: 279 IVDMYAK--CSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
           +VD Y K  C DI  A  +F  M  KD VS+  +I G  ++G  EE L L+ +M +   +
Sbjct: 184 LVDSYCKTCCLDI--ASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQ 241

Query: 337 PNEVTFVGLIYACSHVGL-VGKGRKLFKSMIEDYGITPS----LQHYTCLLDLLSRSGHL 391
           P+  TF  ++      G+ VG    +F   I    I  S    +     LLD  S+  ++
Sbjct: 242 PSGFTFAAML------GMSVGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYI 295

Query: 392 DEAENLIKAMP 402
           D A+NL   MP
Sbjct: 296 DLAKNLFDEMP 306


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 206/581 (35%), Positives = 330/581 (56%), Gaps = 33/581 (5%)

Query: 30  IKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTI 89
           IK G + +  L   LI  + KC  V+ A  L  E+ ++D +S  ++++ +      + ++
Sbjct: 58  IKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSV 117

Query: 90  SIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM 149
            +F  +L+  + +        L+      G + L   +H       FC    VK  +V  
Sbjct: 118 RLFKELLSSGE-RVSSSTIVGLIPVYSPFGHSYLCNCIHG------FC----VKLGIVS- 165

Query: 150 YAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALV 209
                               +SVS TA+ + Y R      A ++F+++  + L  W A++
Sbjct: 166 -------------------HSSVS-TALTTVYCRLNEMIFARQLFDESAEKTLASWNAMI 205

Query: 210 SGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY 269
           SG  Q+     A   F  M++  V+  +P+ ++SI+ ACA    L LG+ +H L+ +  +
Sbjct: 206 SGCTQNGLTDAAISLFQTMQKNNVN-PNPVTVTSILSACAQIGALSLGEWVHSLIKSNRF 264

Query: 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDE 329
           ES +++S A++DMYAKC  I  A+++F  M  K+ V+W ++I G   HG  +E L L+ +
Sbjct: 265 ESNVYVSTALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYD 324

Query: 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389
           M+S+ VKP  +TF+ ++YACSH GLV +G  +F +M+ D+G  P  +HY C++D+L R+G
Sbjct: 325 MLSSSVKPTGLTFLSVLYACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAG 384

Query: 390 HLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSN 449
            L +A   IKAMP EP  P W ALL AC  H++T +    +  L  L PE+   Y+L+SN
Sbjct: 385 QLKKALEFIKAMPVEPGPPVWGALLGACMIHKDTNLAHVASEKLFELDPENIGYYVLMSN 444

Query: 450 VYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTE 509
           +Y+    +   + VR++     + K PG + IE G+  H+F +G+ SHP    I+  L +
Sbjct: 445 IYSVERKYPQAASVRQVAKKKRLAKTPGCTLIEIGQVPHVFTSGDQSHPQSKAIYAELDK 504

Query: 510 LDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRV 569
           L  +M   G+  +T++VLHD+E++EKE  +  HSE+LA+A+GL+ + PG  +R++KNLRV
Sbjct: 505 LTGKMTEAGFQTETTTVLHDLEEEEKELTMKVHSEKLAIAFGLISTEPGAEIRIIKNLRV 564

Query: 570 CGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           C DCH   K +S+ITKR IVVRDA R+HHFKDG CSC D+W
Sbjct: 565 CLDCHNWTKFLSKITKRVIVVRDANRFHHFKDGLCSCGDYW 605



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 171/380 (45%), Gaps = 35/380 (9%)

Query: 75  ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134
           +++ + + +  + +I +F  M+  +  + D     +++ A   L   +LG Q+    +  
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
            F     + + L+ +++KCG    AR +F  I+ K+ +S  AM+S +  +G  +D++ +F
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
           ++       + ++ + GL+   +     Y                               
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSY------------------------------- 149

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
            L   IHG  + LG  S   +S A+  +Y + +++I A+ +F     K + SW ++I G 
Sbjct: 150 -LCNCIHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGC 208

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
            Q+G  +  ++L+  M    V PN VT   ++ AC+ +G +  G +   S+I+      +
Sbjct: 209 TQNGLTDAAISLFQTMQKNNVNPNPVTVTSILSACAQIGALSLG-EWVHSLIKSNRFESN 267

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           +   T L+D+ ++ G +  A  L   MP E +E TW A++S    H + +   ++   +L
Sbjct: 268 VYVSTALIDMYAKCGSITVARELFDLMP-EKNEVTWNAMISGYGLHGHGQEALKLFYDML 326

Query: 435 SLKPEDPSSYILLSNVYASA 454
           S     P+    LS +YA +
Sbjct: 327 S-SSVKPTGLTFLSVLYACS 345



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/170 (31%), Positives = 92/170 (54%), Gaps = 1/170 (0%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H   +KLG+  +  +   L   Y + + + +A  L +E  ++   SW ++++   Q  L
Sbjct: 154 IHGFCVKLGIVSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGL 213

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
               IS+F TM   + + P+     S++ AC  +GA  LG+ VH+    + F  +  V +
Sbjct: 214 TDAAISLFQTMQK-NNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVST 272

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
           +L+DMYAKCG    AR +FD +  KN V+W AM+S Y   G  ++A+++F
Sbjct: 273 ALIDMYAKCGSITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLF 322



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 145/320 (45%), Gaps = 47/320 (14%)

Query: 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267
           ++SG V++    D+   F +M        D   + +++ A A    L+LG QI  L I  
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQELKLGMQILCLAIKC 60

Query: 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327
           G+ S + +   ++ +++KC ++  A+ +FG +R+KD++S  ++I G   +G+ E+++ L+
Sbjct: 61  GFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETEDSVRLF 120

Query: 328 DEMVSAGVKPNEVTFVGLI--YA--------------CSHVGLVGK-------------- 357
            E++S+G + +  T VGLI  Y+              C  +G+V                
Sbjct: 121 KELLSSGERVSSSTIVGLIPVYSPFGHSYLCNCIHGFCVKLGIVSHSSVSTALTTVYCRL 180

Query: 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP---FEPDEPTWAALL 414
              +F   + D     +L  +  ++   +++G  D A +L + M      P+  T  ++L
Sbjct: 181 NEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVNPNPVTVTSIL 240

Query: 415 SACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK------VRKLMS 468
           SAC       +G  V + + S + E        SNVY S A+    +K       R+L  
Sbjct: 241 SACAQIGALSLGEWVHSLIKSNRFE--------SNVYVSTALIDMYAKCGSITVARELFD 292

Query: 469 VMEVKKEPGYSYIEFGKGSH 488
           +M  K E  ++ +  G G H
Sbjct: 293 LMPEKNEVTWNAMISGYGLH 312


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/601 (36%), Positives = 328/601 (54%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+R       + + A  +K GL     + ++LI  Y  C  V  A  L + + +   
Sbjct: 126 LKSCSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGV 185

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V W +I+TAY +     + + +F  ML +  +  D     S+V ACG +G  +LGK V  
Sbjct: 186 VMWNAIITAYMKNGNWMEVVEMFKGMLEVG-VAFDEITLVSVVTACGRIGDAKLGKWV-- 242

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                                        A  V +   ++N    TA++  YA+ G    
Sbjct: 243 -----------------------------AEYVDEKGLVRNRNLMTALIDMYAKCGELGK 273

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F+    R++  W+A++SG  Q+    +A   F EM+   V+  D + + S++ ACA
Sbjct: 274 ARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEMQLAEVEPND-VTMVSVLSACA 332

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LE GK +H  +        + +  A+VD YAKC  I  A + F  M  K+  +WT+
Sbjct: 333 VLGALETGKWVHSYIRRKRLSLTIILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTA 392

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G A +G+  E L L+  M  A ++P +VTF+G++ ACSH  LV +GR+ F SM +DY
Sbjct: 393 LIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMTQDY 452

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI P  +HY C++DLL R+G +DEA   I+ MP EP+   W ALLS+C  H+N E+G   
Sbjct: 453 GIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPNAVIWRALLSSCAVHKNVEIGEEA 512

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
              ++SL P     YILLSN+YAS   W++ + +RK M    ++K PG S IE       
Sbjct: 513 LKQIVSLNPSHSGDYILLSNIYASVGQWKNAAMIRKEMKDRGIEKTPGCSLIELDGVVVE 572

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F+A ++ HP   EI++ + E+   +K  GY+P+T+ V  ++++ EKE  +  HSE+LA+A
Sbjct: 573 FFAEDSDHPQLKEIYQKVEEMIDRIKMAGYIPNTADVRLEVDEHEKEVSVSHHSEKLAIA 632

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GL+K  PG  +R+ KNLRVC DCH   K+IS++  REIVVRD  R+HHFKDG CSCND+
Sbjct: 633 FGLMKLDPGATIRLSKNLRVCTDCHSATKLISKVYNREIVVRDRNRFHHFKDGTCSCNDY 692

Query: 610 W 610
           W
Sbjct: 693 W 693



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 130/288 (45%), Gaps = 10/288 (3%)

Query: 190 AMEIFEQAPVRNLFL--WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
           A+ +F   P   L    +  L+  L+ + +  DA + F+EM        D   ++  + +
Sbjct: 69  AVSLFRLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACALKS 128

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
           C+    L++G+ I    +  G  +  F+ ++++ MYA C D+ AA+ +F  +    VV W
Sbjct: 129 CSRMCTLDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMW 188

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            +II    ++G   E + ++  M+  GV  +E+T V ++ AC  +G    G K     ++
Sbjct: 189 NAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLG-KWVAEYVD 247

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
           + G+  +    T L+D+ ++ G L +A  L   M    D   W+A++S            
Sbjct: 248 EKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSR-DVVAWSAMISGYTQADQCREAL 306

Query: 428 RVAN--HLLSLKPEDPSSYILLSNVYASAAM----WQHVSKVRKLMSV 469
            + +   L  ++P D +   +LS      A+    W H    RK +S+
Sbjct: 307 ALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRKRLSL 354


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 214/608 (35%), Positives = 341/608 (56%), Gaps = 41/608 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA  + A   + +H + +KLG+     + N L+  Y +   +     +   MP+ D 
Sbjct: 422 LSSCASLKWAKLGQQIHGESLKLGIDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQ 481

Query: 70  VSWASILTAY--NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           VSW SI+ A   ++ +LP+  +   +   A  KL    F       +  S G   LGKQ+
Sbjct: 482 VSWNSIIGALARSERSLPEAVVCFLNAQRAGQKLNRITFSSVLSAVSSLSFG--ELGKQI 539

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI-KLKNSVSWTAMLSAYARSGR 186
           H   + +   D+   +++L+  Y KCG  +    +F  + + +++V+W +M+S Y  +  
Sbjct: 540 HGLALKNNIADEATTENALIACYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNEL 599

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
              A++               LV  ++Q+   +D+F                 + ++++ 
Sbjct: 600 LAKALD---------------LVWFMLQTGQRLDSF-----------------MYATVLS 627

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           A A+ A LE G ++H   +    ES + + +A+VDMY+KC  +  A   F  M  ++  S
Sbjct: 628 AFASVATLERGMEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFNTMPVRNSYS 687

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           W S+I G A+HGQ EE L L++ M   G   P+ VTFVG++ ACSH GL+ +G K F+SM
Sbjct: 688 WNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLEEGFKHFESM 747

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC--KHHRNT 423
            + YG+ P ++H++C+ D+L R+G LD+ E+ I+ MP +P+   W  +L AC   + R  
Sbjct: 748 SDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGACCRANGRKA 807

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           E+G + A  L  L+PE+  +Y+LL N+YA+   W+ + K RK M   +VKKE GYS++  
Sbjct: 808 ELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTM 867

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
             G H+F AG+ SHP  D I++ L EL+ +M+  GYVP T   L+D+EQ+ KE  L +HS
Sbjct: 868 KDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHS 927

Query: 544 ERLAVAYGLLKSVPGTV-LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           E+LAVA+ L      T+ +R++KNLRVCGDCH   K IS+I  R+I++RD+ R+HHF+DG
Sbjct: 928 EKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDG 987

Query: 603 KCSCNDFW 610
            CSC+DFW
Sbjct: 988 ACSCSDFW 995



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 114/403 (28%), Positives = 182/403 (45%), Gaps = 45/403 (11%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKC-DLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           + +H  + KL       + N LI  Y KC   V YA     ++  ++ VSW SI++ Y+Q
Sbjct: 124 RQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQ 183

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA--TRLGKQVHACFVLSPFCDD 139
           A   +    IFS+M   D  +P  + F SLV    SL     RL +Q+      S    D
Sbjct: 184 AGDQRSAFRIFSSM-QYDGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTD 242

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             V S LV                               SA+A+SG    A ++F Q   
Sbjct: 243 LFVGSGLV-------------------------------SAFAKSGSLSYARKVFNQMET 271

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP----LVLSSIVG-ACANFAVL 254
           RN      L+ GLV+ +   +A   F++M    +D V P    ++LSS    + A    L
Sbjct: 272 RNAVTLNGLMVGLVRQKWGEEATKLFMDMNSM-ID-VSPESYVILLSSFPEYSLAEEVGL 329

Query: 255 ELGKQIHGLVIALGYESCLF-ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           + G+++HG VI  G    +  I N +V+MYAKC  I  A+ +F  M  KD VSW S+I G
Sbjct: 330 KKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMITG 389

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
             Q+G   E +  Y  M    + P   T +  + +C+ +     G+++    ++  GI  
Sbjct: 390 LDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESLK-LGIDL 448

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           ++     L+ L + +G+L+E   +  +MP E D+ +W +++ A
Sbjct: 449 NVSVSNALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSIIGA 490



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 108/462 (23%), Positives = 209/462 (45%), Gaps = 52/462 (11%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L  ++ C  H+ A   +  H+++ K  L +   L N LI+AY +      A  + +EMP 
Sbjct: 7   LSFVQSCVGHRGA--ARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPL 64

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL--G 124
           R+ VSWA I++ Y++ N   K   +F   +  + +  + + F S+++AC  +G+  +  G
Sbjct: 65  RNCVSWACIVSGYSR-NGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILFG 123

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKC-GLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           +Q+H       +  D VV + L+ MY KC G    A   F  I++KNSVSW +++S Y++
Sbjct: 124 RQIHGLMFKLSYAVDAVVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQ 183

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           +G ++ A  IF                  +Q        Y+F  +      + +P V   
Sbjct: 184 AGDQRSAFRIFSS----------------MQYDGSRPTEYTFGSLVTTACSLTEPDV--- 224

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
                       L +QI   +   G  + LF+ + +V  +AK   +  A+ +F +M  ++
Sbjct: 225 -----------RLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQMETRN 273

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSA-GVKPNEVTFVGLIYA------CSHVGLVG 356
            V+   ++VG  +    EE   L+ +M S   V P   ++V L+ +         VGL  
Sbjct: 274 AVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPE--SYVILLSSFPEYSLAEEVGL-K 330

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           KGR++   +I    +   +     L+++ ++ G + +A  +   M  + D  +W ++++ 
Sbjct: 331 KGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMT-DKDSVSWNSMITG 389

Query: 417 CKHHRNTEMGTRVANHLLSLKPED--PSSYILLSNVYASAAM 456
              +              S++  D  P S+ L+S++ + A++
Sbjct: 390 LDQN---GCFIEAVERYKSMRRHDILPGSFTLISSLSSCASL 428



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 173/390 (44%), Gaps = 54/390 (13%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           L+ A+ K   + YA  +  +M  R+ V+   ++    +    ++   +F  M ++  + P
Sbjct: 249 LVSAFAKSGSLSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSP 308

Query: 104 DHFVFA-------SLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGL 155
           + +V         SL +  G     + G++VH   + +   D  V + + LV+MYAKCG 
Sbjct: 309 ESYVILLSSFPEYSLAEEVG----LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGS 364

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
             +AR VF  +  K+SVS                               W ++++GL Q+
Sbjct: 365 IADARRVFYFMTDKDSVS-------------------------------WNSMITGLDQN 393

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI 275
              I+A   +  MRR  + +     L S + +CA+    +LG+QIHG  + LG +  + +
Sbjct: 394 GCFIEAVERYKSMRRHDI-LPGSFTLISSLSSCASLKWAKLGQQIHGESLKLGIDLNVSV 452

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA-EETLALYDEMVSAG 334
           SNA++ +YA+   +   + IF  M   D VSW SII   A+  ++  E +  +     AG
Sbjct: 453 SNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFLNAQRAG 512

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKL----FKSMIEDYGITPSLQHYTCLLDLLSRSGH 390
            K N +TF  ++ A S +     G+++     K+ I D   T +      L+    + G 
Sbjct: 513 QKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTEN-----ALIACYGKCGE 567

Query: 391 LDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           +D  E +   M    D  TW +++S   H+
Sbjct: 568 MDGCEKIFSRMAERRDNVTWNSMISGYIHN 597



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 93/357 (26%), Positives = 159/357 (44%), Gaps = 43/357 (12%)

Query: 110 SLVKAC-GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL 168
           S V++C G  GA R     H+    +    D  + ++L++ Y + G   +AR VFD + L
Sbjct: 8   SFVQSCVGHRGAARF---FHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPL 64

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228
           +N VSW  ++S Y+R+G  K+A+          +FL   +  G+  ++      Y+F+ +
Sbjct: 65  RNCVSWACIVSGYSRNGEHKEAL----------VFLRDMVKEGIFSNQ------YAFVSV 108

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
            R   +I    +L               G+QIHGL+  L Y     +SN ++ MY KC  
Sbjct: 109 LRACQEIGSVGIL--------------FGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIG 154

Query: 289 IIA-AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI- 346
            +  A   FG +  K+ VSW SII   +Q G       ++  M   G +P E TF  L+ 
Sbjct: 155 SVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVT 214

Query: 347 YACSHVGLVGKGRKLFKSM---IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            ACS   L     +L + +   I+  G+   L   + L+   ++SG L  A  +   M  
Sbjct: 215 TACS---LTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYARKVFNQME- 270

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
             +  T   L+      +  E  T++   + S+    P SY++L + +   ++ + V
Sbjct: 271 TRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEYSLAEEV 327


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 209/589 (35%), Positives = 327/589 (55%), Gaps = 36/589 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + + A+ +  G      + N LI+ Y KC  ++ A  + + +  RD ++W ++++ Y + 
Sbjct: 183 REIEARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQ 242

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + + +F  M   D  +P+   F  L+ AC +L     G+ +H       +  D V+
Sbjct: 243 GAATQALELFQRMGPNDP-KPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVI 301

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            + L++MY KC                              S   ++A ++FE+   R++
Sbjct: 302 GNVLLNMYTKC------------------------------SSSLEEARQVFERLRTRDV 331

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W  L+   VQ     DA   F +M+ E V   + + LS+++ ACA       GK +H 
Sbjct: 332 ITWNILIVAYVQYGQAKDALDIFKQMQLENV-APNEITLSNVLSACAVLGAKRQGKAVHA 390

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L+ +   ++ + + N++++MY +C  +     +F  +R K +VSW+++I   AQHG +  
Sbjct: 391 LIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRT 450

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L  + E++  G+  ++VT V  + ACSH G++ +G + F SM+ D+G+ P  +H+ C++
Sbjct: 451 GLEHFWELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMV 510

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLLSR+G L+ AENLI  MPF PD   W +LLS CK H +T+   RVA+ L  L+ ED  
Sbjct: 511 DLLSRAGRLEAAENLIHDMPFLPDAVAWTSLLSGCKLHNDTKRAARVADKLFELESEDEH 570

Query: 443 SYI-LLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
           S + LLSNVYA A  W  V K R   +    +K PG SYIE     H F AG+ SHP ++
Sbjct: 571 STVTLLSNVYAEAGRWDDVRKTRNRRA---ARKNPGCSYIEINDTVHEFVAGDKSHPEEE 627

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            I   +  L  +MK  GYVPD   VLH+++++EKE+ L +HSE+LA+AYGL+ + PGT L
Sbjct: 628 LIAAEIKRLSKQMKDAGYVPDMRMVLHNVKEEEKEQMLCYHSEKLAIAYGLISTPPGTPL 687

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +VKNLR C DCH   K ISRI  R+IVVRD+TR+HHF++G CSC D+W
Sbjct: 688 HIVKNLRACVDCHAAAKFISRIVGRKIVVRDSTRFHHFENGSCSCKDYW 736



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 117/421 (27%), Positives = 215/421 (51%), Gaps = 42/421 (9%)

Query: 12  VCARHQIALTVKTLHAQIIKLGLHQYGPLPNT-LIDAYGKCDLVQYAHHLLEEMPQRDHV 70
           VC+  +     + LHA I++  L ++  +  T LI  Y +C  ++ A    +EM ++  V
Sbjct: 67  VCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLV 126

Query: 71  SWASILTAYNQANLPQKTISIFSTMLAL--DKLQPDHFVFASLVKACGSLGATRLGKQVH 128
           +W +++  Y++    +  + I+  M++   + ++PD   F+S + AC  +G    G+++ 
Sbjct: 127 TWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIE 186

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           A  V S +  D +V+++L++MY+KCG   +AR VFD +K ++ ++W  M+S YA+ G   
Sbjct: 187 ARTVASGYASDSIVQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAAT 246

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI--VG 246
            A+E+F+                                  R G +   P V++ I  + 
Sbjct: 247 QALELFQ----------------------------------RMGPNDPKPNVVTFIGLLT 272

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII-AAKDIFGRMRRKDVV 305
           AC N   LE G+ IH  V   GYES L I N +++MY KCS  +  A+ +F R+R +DV+
Sbjct: 273 ACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVI 332

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +W  +IV   Q+GQA++ L ++ +M    V PNE+T   ++ AC+ +G   +G K   ++
Sbjct: 333 TWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGAKRQG-KAVHAL 391

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
           I        +     L+++ +R G LD+   +  A+  +    +W+ L++A   H ++  
Sbjct: 392 IASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIR-DKSLVSWSTLIAAYAQHGHSRT 450

Query: 426 G 426
           G
Sbjct: 451 G 451



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 107/411 (26%), Positives = 205/411 (49%), Gaps = 36/411 (8%)

Query: 48  YGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV 107
           YGKC  V  A  +   +   + VSW  I+ A+ +    ++ +  +  M+ L+ L+PD  +
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMV-LEGLRPDGAM 60

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV-KSSLVDMYAKCGLPNNARAVFDSI 166
           F   +  C S    + G+ +HA  + +   + D++  ++L+ MYA+C     AR  FD +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
             K  V+W A+++ Y+R+G  + A++I++                              +
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQD----------------------------MV 152

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
               EG+   D +  SS + AC+    +  G++I    +A GY S   + NA+++MY+KC
Sbjct: 153 SKSPEGMK-PDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQNALINMYSKC 211

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             + +A+ +F R++ +DV++W ++I G A+ G A + L L+  M     KPN VTF+GL+
Sbjct: 212 GSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPKPNVVTFIGLL 271

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR-SGHLDEAENLIKAMPFEP 405
            AC+++  + +GR + +  ++++G    L     LL++ ++ S  L+EA  + + +    
Sbjct: 272 TACTNLEDLEQGRAIHRK-VKEHGYESDLVIGNVLLNMYTKCSSSLEEARQVFERLRTR- 329

Query: 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           D  TW  L+ A   +   +    +    + L+   P+  I LSNV ++ A+
Sbjct: 330 DVITWNILIVAYVQYGQAKDALDIFKQ-MQLENVAPNE-ITLSNVLSACAV 378



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 146/303 (48%), Gaps = 43/303 (14%)

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           MY KCG   +A AVF +I+  NSVSWT +++A+AR+G  ++A+  + +  +  L      
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGL------ 54

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
                               R +G   V        +G C++   L+ G+ +H +++   
Sbjct: 55  --------------------RPDGAMFV------VAIGVCSSSKDLKQGQLLHAMILETQ 88

Query: 269 -YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327
             E  + +  A++ MYA+C D+  A+  F  M +K +V+W ++I G +++G     L +Y
Sbjct: 89  LLEFDIILGTALITMYARCRDLELARKTFDEMGKKTLVTWNALIAGYSRNGDHRGALKIY 148

Query: 328 DEMVSA---GVKPNEVTFVGLIYACSHVGLVGKGRKL-FKSMIEDYGITPSLQHYTCLLD 383
            +MVS    G+KP+ +TF   +YACS VG + +GR++  +++   Y     +Q+   L++
Sbjct: 149 QDMVSKSPEGMKPDAITFSSALYACSVVGDISQGREIEARTVASGYASDSIVQN--ALIN 206

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           + S+ G L+ A  +   +    D   W  ++S    +      T+       + P DP  
Sbjct: 207 MYSKCGSLESARKVFDRLK-NRDVIAWNTMISG---YAKQGAATQALELFQRMGPNDPKP 262

Query: 444 YIL 446
            ++
Sbjct: 263 NVV 265



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 3/173 (1%)

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  +  A  +F  +   + VSWT I+   A++G   E L  Y  MV  G++P+   
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           FV  I  CS    + +G+ L   ++E   +   +   T L+ + +R   L+ A      M
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE--DPSSYILLSNVYA 452
             +    TW AL++    + +     ++   ++S  PE   P +    S +YA
Sbjct: 121 G-KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYA 172


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  402 bits (1033), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/613 (35%), Positives = 337/613 (54%), Gaps = 43/613 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLG-LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L  C+  ++  T K LHA  +K G L +   + + L+D Y  C  V     + + M  R 
Sbjct: 222 LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRK 281

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
              W +++  Y+Q    ++ + +F  M     L  +    A +V AC   GA    + +H
Sbjct: 282 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIH 341

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              V      D  V+++L+DMY+                               R G+  
Sbjct: 342 GFVVKRGLDRDRFVQNTLMDMYS-------------------------------RLGKID 370

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR------EGVDIV----DP 238
            AM IF +   R+L  W  +++G V S +  DA     +M+       +G   V    + 
Sbjct: 371 IAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNS 430

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
           + L +I+ +CA  + L  GK+IH   I     + + + +A+VDMYAKC  +  ++ +F +
Sbjct: 431 ITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 490

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
           + +K+V++W  II+    HG  +E + L   M+  GVKPNEVTF+ +  ACSH G+V +G
Sbjct: 491 IPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEG 550

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP-TWAALLSAC 417
            ++F  M  DYG+ PS  HY C++DLL R+G + EA  L+  MP + ++   W++LL A 
Sbjct: 551 LRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGAS 610

Query: 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPG 477
           + H N E+G   A +L+ L+P   S Y+LL+N+Y+SA +W   ++VR+ M    V+KEPG
Sbjct: 611 RIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPG 670

Query: 478 YSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKER 537
            S+IE G   H F AG++SHP  +++   L  L   M++ GYVPDTS VLH++E+ EKE 
Sbjct: 671 CSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEI 730

Query: 538 QLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYH 597
            L  HSE+LA+A+G+L + PGT++RV KNLRVC DCH+  K IS+I  REI++RD  R+H
Sbjct: 731 LLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFH 790

Query: 598 HFKDGKCSCNDFW 610
            FK+G CSC D+W
Sbjct: 791 RFKNGTCSCGDYW 803



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 195/415 (46%), Gaps = 49/415 (11%)

Query: 23  KTLHAQIIKLG-LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           K +HA  ++ G L+ +  + NTL+  YGK   +  +  LL     RD V+W ++L++  Q
Sbjct: 135 KQVHAYGLRKGELNSF--IINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 192

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD- 140
                + +     M+ L+ ++PD F  +S++ AC  L   R GK++HA  + +   D++ 
Sbjct: 193 NEQLLEALEYLREMV-LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 251

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V S+LVDMY  C    + R VFD +  +    W AM++ Y+++   K+A+ +       
Sbjct: 252 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL------- 304

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
                                   FI M      + +   ++ +V AC         + I
Sbjct: 305 ------------------------FIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAI 340

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG V+  G +   F+ N ++DMY++   I  A  IFG+M  +D+V+W ++I G       
Sbjct: 341 HGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHH 400

Query: 321 EETLALYDEM------VSAG-----VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           E+ L L  +M      VS G     +KPN +T + ++ +C+ +  + KG+++    I++ 
Sbjct: 401 EDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN- 459

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
            +   +   + L+D+ ++ G L  +  +   +P + +  TW  ++ A   H N +
Sbjct: 460 NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQ 513



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 204/456 (44%), Gaps = 61/456 (13%)

Query: 23  KTLHAQIIKLGLHQYG----PLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           K +HA + K G   YG     + NTL++ Y KC      + + + + +R+ VSW S++++
Sbjct: 30  KQIHAHVYKFG---YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISS 86

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSL---GATRLGKQVHACFVLSP 135
                  +  +  F  ML  + ++P  F   S+V AC +L       +GKQVHA + L  
Sbjct: 87  LCSFEKWEMALEAFRCMLD-ENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHA-YGLRK 144

Query: 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
              +  + ++LV MY K G   +++ +  S   ++ V+W  +LS+               
Sbjct: 145 GELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSS--------------- 189

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
                           L Q+   ++A     EM  EGV+  D   +SS++ AC++  +L 
Sbjct: 190 ----------------LCQNEQLLEALEYLREMVLEGVE-PDEFTISSVLPACSHLEMLR 232

Query: 256 LGKQIHGLVIALG-YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
            GK++H   +  G  +   F+ +A+VDMY  C  +++ + +F  M  + +  W ++I G 
Sbjct: 233 TGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGY 292

Query: 315 AQHGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
           +Q+   +E L L+  M  SAG+  N  T  G++ AC   G   + ++     +   G+  
Sbjct: 293 SQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR-KEAIHGFVVKRGLDR 351

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA---CKHH---------- 420
                  L+D+ SR G +D A  +   M  + D  TW  +++     +HH          
Sbjct: 352 DRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITGYVFSEHHEDALLLLHKM 410

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           +N E         +SLKP   +   +L +  A +A+
Sbjct: 411 QNLERKVSKGASRVSLKPNSITLMTILPSCAALSAL 446



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 144/320 (45%), Gaps = 38/320 (11%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHA-CFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           ++PD++ F +L+KA   L    LGKQ+HA  +      D   V ++LV++Y KCG     
Sbjct: 6   IKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAV 65

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
             VFD I  +N VS                               W +L+S L       
Sbjct: 66  YKVFDRISERNQVS-------------------------------WNSLISSLCSFEKWE 94

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE---LGKQIHGLVIALGYESCLFIS 276
            A  +F  M  E V+      L S+V AC+N  + E   +GKQ+H   +  G E   FI 
Sbjct: 95  MALEAFRCMLDENVE-PSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKG-ELNSFII 152

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
           N +V MY K   + ++K + G    +D+V+W +++    Q+ Q  E L    EMV  GV+
Sbjct: 153 NTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVE 212

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
           P+E T   ++ ACSH+ ++  G++L    +++  +  +    + L+D+      +     
Sbjct: 213 PDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRR 272

Query: 397 LIKAMPFEPDEPTWAALLSA 416
           +   M F+     W A+++ 
Sbjct: 273 VFDGM-FDRKIGLWNAMIAG 291



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 112/245 (45%), Gaps = 36/245 (14%)

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYE-SCLFISNAIVDMYAKCSDIIAAKDI 295
           D     +++ A A+   +ELGKQIH  V   GY    + ++N +V++Y KC D  A   +
Sbjct: 9   DNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKV 68

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG-- 353
           F R+  ++ VSW S+I       + E  L  +  M+   V+P+  T V ++ ACS++   
Sbjct: 69  FDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMP 128

Query: 354 ---LVGKG------RK------LFKSMIEDYGITPSLQHYTCLL------DLLSRS---G 389
              ++GK       RK      +  +++  YG    L     LL      DL++ +    
Sbjct: 129 EGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLS 188

Query: 390 HLDEAENLIKAMPF---------EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
            L + E L++A+ +         EPDE T +++L AC H      G  +  + L     D
Sbjct: 189 SLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLD 248

Query: 441 PSSYI 445
            +S++
Sbjct: 249 ENSFV 253


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/604 (34%), Positives = 334/604 (55%), Gaps = 38/604 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C    +    + +H++++  GL     + N+L+  Y K   +  A  + + M +RD 
Sbjct: 168 LKACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDRMAERDL 227

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW ++++ Y + N    T  +   ++    L  D      L+ AC  L A + GK +H 
Sbjct: 228 TSWNTMISGYAK-NADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEGKVIHG 286

Query: 130 CFVLSPFCD-DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
             V +   + +    +SL++MY  C    +AR +F+ ++ K++VS               
Sbjct: 287 YAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVS--------------- 331

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP--LVLSSIVG 246
                           W +++ G   +RN  DAF S    RR  +D   P  +   +++G
Sbjct: 332 ----------------WNSMILGY--ARNG-DAFESLRLFRRMALDGSGPDQVTFIAVLG 372

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           AC   A L  G  IH  ++  G+++   +  A+VDMY+KC  +  ++ +F  M  K +VS
Sbjct: 373 ACDQIAALRYGMSIHSYLVKKGFDANTIVGTALVDMYSKCGSLACSRRVFDEMPDKSLVS 432

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W++++ G   HG+  E +++ D M +  V P+   F  ++ ACSH GLV +G+++F  M 
Sbjct: 433 WSAMVAGYGLHGRGREAISILDGMKANSVIPDNGVFTSILSACSHAGLVVEGKEIFYKME 492

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
           ++Y + P+L HY+C++DLL R+GHLDEA  +I+ M  +P    WAALL+A + H+N ++ 
Sbjct: 493 KEYNVKPALSHYSCMVDLLGRAGHLDEAYVIIRTMEIKPTSDIWAALLTASRLHKNIKLA 552

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
              A  +  + P+  SSYI LSN+YA+   W  V +VR ++    +KK PG S+IE    
Sbjct: 553 EISAQKVFDMNPKVVSSYICLSNIYAAEKRWDDVERVRAMVRRKGLKKSPGCSFIELDNM 612

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            H F  G+ SH   ++I+  L EL  ++K  GY PDTS V +D+E++ KE+ L+ HSERL
Sbjct: 613 VHRFLVGDKSHQQTEDIYAKLNELKQQLKEAGYKPDTSLVFYDVEEEVKEKMLWDHSERL 672

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+A+ L+ + PGTV+R+ KNLRVCGDCH V K+IS +T REI++RD  R+HHF  G CSC
Sbjct: 673 AIAFALINTGPGTVIRITKNLRVCGDCHTVTKLISELTGREIIMRDIHRFHHFIKGFCSC 732

Query: 607 NDFW 610
            D+W
Sbjct: 733 GDYW 736



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/401 (26%), Positives = 195/401 (48%), Gaps = 39/401 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDA-YGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           + LHA +I   + +     NT + A Y  C L+  A  + + +  ++   W  ++  Y  
Sbjct: 79  QQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVLKNSFLWNFMIRGYAS 138

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
             LP K++ ++  ML   + + D+F +  ++KACG L    +G++VH+  V+     D  
Sbjct: 139 NGLPMKSLVLYREMLCFGQ-RADNFTYPFVLKACGDLLLVEIGRRVHSEVVVCGLESDIY 197

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V +SL+ MYAK G    AR VFD +  ++  SW  M+S YA++     A  +F+      
Sbjct: 198 VGNSLLAMYAKFGDMGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAG 257

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           LF                                 D   L  ++ ACA+   ++ GK IH
Sbjct: 258 LF--------------------------------ADCTTLLGLLSACADLKAVKEGKVIH 285

Query: 262 GLVI--ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           G  +  ++G  +  F +N++++MY  C+ ++ A+ +F R+R KD VSW S+I+G A++G 
Sbjct: 286 GYAVRNSIGNYN-KFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYARNGD 344

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
           A E+L L+  M   G  P++VTF+ ++ AC  +  +  G  +   +++  G   +    T
Sbjct: 345 AFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKK-GFDANTIVGT 403

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            L+D+ S+ G L  +  +   MP +    +W+A+++    H
Sbjct: 404 ALVDMYSKCGSLACSRRVFDEMP-DKSLVSWSAMVAGYGLH 443



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/425 (23%), Positives = 191/425 (44%), Gaps = 85/425 (20%)

Query: 53  LVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLA---LDKLQPDHFVFA 109
           L+ +  H +     R++ S+ S  +  + A + ++++S+    L    L  LQ       
Sbjct: 9   LIAWTPHAILGGRDREYNSFTSHFSQGDVAQMVERSLSMREHPLQQYPLTSLQC-----G 63

Query: 110 SLVKACGSLGATRLGKQVHACFV-LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL 168
           +L+++  +  + + G+Q+HA  +  S   ++  + + L   YA CGL + A  +FD I L
Sbjct: 64  ALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYAGCGLMSQAEVIFDGIVL 123

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228
           KNS  W  M+  YA +G            P+++L L+  ++    ++ N           
Sbjct: 124 KNSFLWNFMIRGYASNG-----------LPMKSLVLYREMLCFGQRADN----------- 161

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
                    P VL     AC +  ++E+G+++H  V+  G ES +++ N+++ MYAK  D
Sbjct: 162 ------FTYPFVLK----ACGDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGD 211

Query: 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
           +  A+ +F RM  +D+ SW ++I G A++  +     ++D M  AG+  +  T +GL+ A
Sbjct: 212 MGTARMVFDRMAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSA 271

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHY---------------TCLLDL--------- 384
           C+ +  V +G+     +I  Y +  S+ +Y                C++D          
Sbjct: 272 CADLKAVKEGK-----VIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRW 326

Query: 385 ------------LSRSGHLDEAENLIKAMPFE---PDEPTWAALLSACKHHRNTEMGTRV 429
                        +R+G   E+  L + M  +   PD+ T+ A+L AC        G  +
Sbjct: 327 KDTVSWNSMILGYARNGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSI 386

Query: 430 ANHLL 434
            ++L+
Sbjct: 387 HSYLV 391


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/589 (37%), Positives = 324/589 (55%), Gaps = 34/589 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA   K GL Q+  +   LI  Y KC  ++ A HL + M   D V++ ++++ Y+  
Sbjct: 241 RCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSIN 300

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            +   ++ +F  ++ +  L+P      +L+      G   L   +HA  V          
Sbjct: 301 GMVGSSVELFKELVGMG-LRPSSSTLVALIPVHSPFGHEPLAGCLHAHVV---------- 349

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
                    K GL  NA            VS TA+ + Y R      A   F+  P + +
Sbjct: 350 ---------KAGLDANA-----------PVS-TALTTLYCRFNDMDSARRAFDAMPEKTM 388

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W A++SG  Q+     A   F +M+   V   +PL +SS + ACA    L LGK +H 
Sbjct: 389 ESWNAMISGYAQNGLTEMAVALFQQMQALNVR-PNPLTISSALSACAQLGALSLGKWVHK 447

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           ++     E  +++  A++DMY KC  I  A+ IF  M  K+VVSW  +I G   HGQ  E
Sbjct: 448 IIANEKLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAE 507

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L LY +M+ A + P   TF+ ++YACSH GLV +G  +F+SM  DYGITP ++H TC++
Sbjct: 508 ALKLYKDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMV 567

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEP-TWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           DLL R+G L EA  LI   P     P  W ALL AC  H++ ++    +  L  L+PE+ 
Sbjct: 568 DLLGRAGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENT 627

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
             Y+LLSN+Y S   +   + VR+     ++ K PG + IE G   H+F AG+ +HP  D
Sbjct: 628 GYYVLLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLIEIGDRPHVFMAGDRAHPQSD 687

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            I+  L +L A+M   GY PDT + L+D+E++EKE  +  HSE+LA+A+GLL + PGT +
Sbjct: 688 AIYLYLEKLTAKMIEAGYRPDTEAALYDVEEEEKEHMVKVHSEKLAIAFGLLNTEPGTEI 747

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R++KNLRVC DCH   K+IS++T+R IVVRDA+R+HHF+DG CSC D+W
Sbjct: 748 RIIKNLRVCLDCHNATKIISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 796



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 144/349 (41%), Gaps = 53/349 (15%)

Query: 102 QPDHFVFA----SLVKACGSLG------ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYA 151
            PD F FA    SL  +C   G      A+   + +HA  V S F  D+ V S+L  +Y 
Sbjct: 110 SPDSFSFAFAATSLASSCSRGGISPPSAASAALRPLHALAVASGFAADNFVASALAKLYF 169

Query: 152 KCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSG 211
                                             R  DA ++F+  P  +  LW  L++G
Sbjct: 170 TLS-------------------------------RGNDARKVFDAVPSPDTVLWNTLLAG 198

Query: 212 LVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271
           L  S    +A  +F+ M   G    D   L+S++ A A  A   +G+ +H      G   
Sbjct: 199 LSGS----EALEAFVRMAGAGSVRPDSTTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQ 254

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
              +   ++ +YAKC D+  A+ +F RM   D+V++ ++I G + +G    ++ L+ E+V
Sbjct: 255 HEHVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELV 314

Query: 332 SAGVKPNEVTFVGLIYACSHVG---LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
             G++P+  T V LI   S  G   L G       + +   G+  +    T L  L  R 
Sbjct: 315 GMGLRPSSSTLVALIPVHSPFGHEPLAG----CLHAHVVKAGLDANAPVSTALTTLYCRF 370

Query: 389 GHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
             +D A     AMP E    +W A++S    +  TEM   +   + +L 
Sbjct: 371 NDMDSARRAFDAMP-EKTMESWNAMISGYAQNGLTEMAVALFQQMQALN 418


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/675 (32%), Positives = 353/675 (52%), Gaps = 76/675 (11%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGP---LPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L+VCA      T +++H  +I              N+LI+ Y KC     A  + + MP+
Sbjct: 38  LKVCANSSYLRTGESIHGHLIVTNQSSRAKDVYQINSLINLYVKCGETVRARKVFDLMPE 97

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           R+ VSW +++  Y  +    + + +F +M+  D+ +P+ FV   + K+C S G    GKQ
Sbjct: 98  RNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGRIEEGKQ 157

Query: 127 VHACFVLS--------------------------------PFCDDDVVKSSLVDMYAKCG 154
            H CF+ S                                P+CD  V  S+L   Y +CG
Sbjct: 158 FHGCFLKSGLMSHEFVRNTLVYMYSLCSGNGEAIRVLDDLPYCDLSVFSSALSG-YLECG 216

Query: 155 LPNNARAVFDSIKLKNSV---------------------------------------SWT 175
                  V   +  ++ V                                       +  
Sbjct: 217 AFKEGAEVLRRMAKEDLVLDNITYLSCLRLCSNLRDLNLARQIHSRMVRLGFNSEVEASG 276

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
           A+++ Y + G+   A  +F+    +N+ L T ++    Q ++  +A   F +M  + V  
Sbjct: 277 AIINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDAYFQDKSFEEALNLFSKMDTKEVP- 335

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
            +    +  + + A  ++L+ G  +HGLV+  GY + + + NA+V+MYAK   I  A+  
Sbjct: 336 PNEYTFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKA 395

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
           F  M  +D+V+W ++I G + HG   E L  +D M+ AG  PN +TF+G++ ACSHVG V
Sbjct: 396 FSGMTFRDIVTWNTMICGFSHHGLGREGLEAFDRMMIAGEIPNRITFIGVLQACSHVGFV 455

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
            +G   F  +++ + + P LQHYTC++ LLS++G   +AE+ ++  P E D   W ALL+
Sbjct: 456 EQGLYYFNQLMKKFNVQPDLQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRALLN 515

Query: 416 ACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKE 475
           AC   RN  +G +VA + +   P D   Y+LLSN++A +  W+ V++VR LM+   VKKE
Sbjct: 516 ACYVRRNFRLGKKVAEYAIYKYPNDSGVYVLLSNIHAKSREWEGVAEVRSLMNKRGVKKE 575

Query: 476 PGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEK 535
           PG S+I     +H+F A E  HP    I+  + E+ ++++  GY PD + V HD++++++
Sbjct: 576 PGVSWIGIRNQTHVFLAEENQHPEITLIYAKIKEVLSKIRPLGYSPDVAGVFHDVDEEQR 635

Query: 536 ERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATR 595
           E  L +HSE+LAVAYGL+K+   + L V KN+R+C DCH  +K+IS+I+KR IV+RD+ R
Sbjct: 636 EDNLSYHSEKLAVAYGLMKTPENSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNR 695

Query: 596 YHHFKDGKCSCNDFW 610
           +HHF+DG+CSC D+W
Sbjct: 696 FHHFRDGQCSCCDYW 710



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 100/191 (52%), Gaps = 1/191 (0%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           YL  LR+C+  +     + +H+++++LG +        +I+ YGKC  V YA  + +   
Sbjct: 240 YLSCLRLCSNLRDLNLARQIHSRMVRLGFNSEVEASGAIINMYGKCGKVLYAQRVFDNTH 299

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            ++ V   +I+ AY Q    ++ +++FS M    ++ P+ + FA  + +   L   + G 
Sbjct: 300 AQNIVLNTTIMDAYFQDKSFEEALNLFSKM-DTKEVPPNEYTFAISLNSIAELSLLKHGD 358

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            +H   + S + +  +V ++LV+MYAK G   +AR  F  +  ++ V+W  M+  ++  G
Sbjct: 359 LLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMICGFSHHG 418

Query: 186 RKKDAMEIFEQ 196
             ++ +E F++
Sbjct: 419 LGREGLEAFDR 429



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 4/125 (3%)

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESC---LFISNAIVDMYAKCSDIIAAKDIFG 297
           L+ ++  CAN + L  G+ IHG +I     S    ++  N+++++Y KC + + A+ +F 
Sbjct: 34  LNELLKVCANSSYLRTGESIHGHLIVTNQSSRAKDVYQINSLINLYVKCGETVRARKVFD 93

Query: 298 RMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV-SAGVKPNEVTFVGLIYACSHVGLVG 356
            M  ++VVSW +++ G    G   E L L+  MV S   +PNE     +  +CS  G + 
Sbjct: 94  LMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMVFSDESRPNEFVATVVFKSCSSSGRIE 153

Query: 357 KGRKL 361
           +G++ 
Sbjct: 154 EGKQF 158


>gi|297848224|ref|XP_002891993.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297337835|gb|EFH68252.1| hypothetical protein ARALYDRAFT_337864 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 950

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 219/625 (35%), Positives = 349/625 (55%), Gaps = 61/625 (9%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL-----------PQKTIS 90
           N L+  Y K  +++ A ++ E MP+R+ VSW +++  Y Q  +           P++   
Sbjct: 83  NGLVSGYIKNRMIEEARNVFEIMPERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEV 142

Query: 91  IFSTMLA-------------LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
            ++ M               L  + P   V AS     G  G  R G+   A  +     
Sbjct: 143 SWTVMFGGLIDGGRIDDARKLYDMMPGKDVVAS-TNMIG--GLCREGRVDEAREIFDEMR 199

Query: 138 DDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           + +V+  ++++  Y +    + AR +F+ +  K  VSWT+ML  Y  SGR +DA E FE 
Sbjct: 200 ERNVITWTTMITGYGQNKRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEV 259

Query: 197 APVRNLFLWTALVSGL------VQSRN-------------------------EIDAFYSF 225
            P++ +    A++  L      V++R                          E++A   F
Sbjct: 260 MPMKPVIACNAMIVALGEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELF 319

Query: 226 IEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK 285
            +M+R+GV    P ++S I+  CA  A L+ G+Q+H  ++   ++  +++++ ++ MY K
Sbjct: 320 AQMQRQGVRPSFPSLIS-ILSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVK 378

Query: 286 CSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGL 345
           C +++ AK +F R   KD++ W SII G A HG  EE L ++ EM  +G  PN+VT + +
Sbjct: 379 CGELVKAKLVFDRFPSKDIIMWNSIISGYASHGLGEEALKVFHEMPLSGTMPNKVTLIAI 438

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP 405
           + ACS+ G + +G ++F+SM   + +TP+++HY+C +D+L R+G +D+A  LI +M  +P
Sbjct: 439 LTACSYGGKLEEGLEIFESMESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKP 498

Query: 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRK 465
           D   W ALL ACK H   ++    A  L  ++PE+   YILLS++ AS + W  V+++RK
Sbjct: 499 DATVWGALLGACKTHSRLDLAEVAAKKLFEIEPENAGPYILLSSINASRSKWGDVAEMRK 558

Query: 466 LMSVMEVKKEPGYSYIEFGKGSHIFY-AGETSHPLKDEIFELLTELDAEMKRRGYVPDTS 524
            M    V K PG S+IE GK  H+F   G  +HP +  I  +L + D  ++  GY PD S
Sbjct: 559 NMRTKNVSKFPGCSWIEVGKKVHMFTRGGIRNHPEQAMILMMLEKTDGLLREAGYSPDCS 618

Query: 525 SVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRIT 584
            VLHD++++EK   L  HSERLAVAYGLLK   G  +RV+KNLRVCGDCH  +K+IS++T
Sbjct: 619 HVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVT 678

Query: 585 KREIVVRDATRYHHFKDGKCSCNDF 609
           +REI++RDA R+HHF +G+CSC D+
Sbjct: 679 EREIILRDANRFHHFNNGECSCRDY 703



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/258 (25%), Positives = 122/258 (47%), Gaps = 24/258 (9%)

Query: 151 AKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVS 210
           ++ G  N AR  FDS++ K   SW +++S Y  +G  ++A ++F++ P RN+  W  LVS
Sbjct: 28  SRIGQINEARKFFDSLRYKAIGSWNSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVS 87

Query: 211 GLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE 270
           G +++R         IE  R   +I+    + S       +  ++ G  +   ++     
Sbjct: 88  GYIKNR--------MIEEARNVFEIMPERNVVSWTAMVKGY--VQEGMVVEAELLFWRMP 137

Query: 271 SCLFISNAIVDMYAKCSD---IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327
               +S  +  M+    D   I  A+ ++  M  KDVV+ T++I G  + G+ +E   ++
Sbjct: 138 ERNEVSWTV--MFGGLIDGGRIDDARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIF 195

Query: 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
           DEM    V    +T+  +I        V   RKLF+ M E   ++     +T +L   + 
Sbjct: 196 DEMRERNV----ITWTTMITGYGQNKRVDVARKLFEVMPEKTEVS-----WTSMLLGYTL 246

Query: 388 SGHLDEAENLIKAMPFEP 405
           SG +++AE   + MP +P
Sbjct: 247 SGRIEDAEEFFEVMPMKP 264



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/405 (20%), Positives = 166/405 (40%), Gaps = 44/405 (10%)

Query: 71  SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC 130
           SW SI++ Y    LP++   +F  M   + +  +  V   +          R+ ++    
Sbjct: 50  SWNSIVSGYFANGLPREARQMFDEMPERNIVSWNGLVSGYI--------KNRMIEEARNV 101

Query: 131 FVLSPFCDDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
           F + P  + +VV  +++V  Y + G+   A  +F  +  +N VSWT M       GR  D
Sbjct: 102 FEIMP--ERNVVSWTAMVKGYVQEGMVVEAELLFWRMPERNEVSWTVMFGGLIDGGRIDD 159

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A ++++  P +++   T ++ GL +     +A   F EMR   V     +    I G   
Sbjct: 160 ARKLYDMMPGKDVVASTNMIGGLCREGRVDEAREIFDEMRERNVITWTTM----ITGYGQ 215

Query: 250 N---------FAVLELGKQIHGLVIALGYE-----------------SCLFISNAIVDMY 283
           N         F V+    ++    + LGY                    +   NA++   
Sbjct: 216 NKRVDVARKLFEVMPEKTEVSWTSMLLGYTLSGRIEDAEEFFEVMPMKPVIACNAMIVAL 275

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
            +  +I+ A+ +F +M  +D  +W  +I    + G   E L L+ +M   GV+P+  + +
Sbjct: 276 GEVGEIVKARRVFDQMEDRDNATWRGMIKAYERKGFELEALELFAQMQRQGVRPSFPSLI 335

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            ++  C+ +  +  GR++   ++        +   + L+ +  + G L +A+ +    P 
Sbjct: 336 SILSVCATLASLQYGRQVHAHLVR-CQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFP- 393

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
             D   W +++S    H   E   +V  H + L    P+   L++
Sbjct: 394 SKDIIMWNSIISGYASHGLGEEALKVF-HEMPLSGTMPNKVTLIA 437



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 86/196 (43%), Gaps = 9/196 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VCA        + +HA +++        + + L+  Y KC  +  A  + +  P +D 
Sbjct: 338 LSVCATLASLQYGRQVHAHLVRCQFDGDVYVASVLMTMYVKCGELVKAKLVFDRFPSKDI 397

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           + W SI++ Y    L ++ + +F  M  L    P+     +++ AC   G    G ++  
Sbjct: 398 IMWNSIISGYASHGLGEEALKVFHEM-PLSGTMPNKVTLIAILTACSYGGKLEEGLEIFE 456

Query: 130 CFVLSPFCDDDVVK--SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGR 186
             + S FC    V+  S  VDM  + G  + A  + +S+ +K ++  W A+L A     R
Sbjct: 457 S-MESKFCVTPTVEHYSCTVDMLGRAGKVDKAMELINSMTIKPDATVWGALLGACKTHSR 515

Query: 187 ----KKDAMEIFEQAP 198
               +  A ++FE  P
Sbjct: 516 LDLAEVAAKKLFEIEP 531


>gi|414883627|tpg|DAA59641.1| TPA: hypothetical protein ZEAMMB73_113196 [Zea mays]
          Length = 637

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/523 (39%), Positives = 303/523 (57%), Gaps = 11/523 (2%)

Query: 98  LDKLQPDHFVF--ASLVK-------ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVD 148
           L +  P  F F  ASL         A GS+ +  +G  VHA  V +    D  V+++ + 
Sbjct: 116 LPRRNPHSFTFLLASLSNHLDTEPAAAGSIASRFMGTHVHALAVKAGAAGDLYVRNAQIH 175

Query: 149 MYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTA 207
            Y  CG     R VFD + + ++ V+W A+L+ Y R+G    A E+F+  PVR+   W+ 
Sbjct: 176 FYGVCGDVAAMRKVFDELPIVRDVVTWNAVLAGYVRAGMVGVAREVFDGMPVRDEVSWST 235

Query: 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267
           ++ G V+      A   F  M  +GV   +  +++++  A A   +LE GK +H +V  +
Sbjct: 236 VIGGYVKEGEPEVALGVFKNMVAQGVKANEAAIVTAL-SAAAQLGLLEQGKFVHEVVKRV 294

Query: 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327
           G    + +  A++DMY+KC  + AAK++F  M R+DV +W S+I G A HG   + + L+
Sbjct: 295 GMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATHGLGHDAVQLF 354

Query: 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
           ++ VS G  P  +TFVG++ ACS  GLV +GR+ FK M E Y I   ++HY C++DLLSR
Sbjct: 355 EKFVSEGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEMEHYGCMVDLLSR 414

Query: 388 SGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447
           +G + EA  LI+ M   PD   W  +LSACK H   ++G  V N L+ L P     Y+LL
Sbjct: 415 AGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLIELDPAHDGYYVLL 474

Query: 448 SNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELL 507
           +++YA A  W  V KVRKLMS     K  G+S +E     H F  G+ +H     I+ +L
Sbjct: 475 ASIYAKAKKWDEVRKVRKLMSNRGTSKSAGWSLMEAHGIVHKFLVGDMNHKDSARIYNML 534

Query: 508 TELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNL 567
             ++  +   GYVPD SSVLHD+  +EK   +  HSERLA+AYG +    G+ +R+VKNL
Sbjct: 535 CTINRRLAEAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVVEAGSPIRIVKNL 594

Query: 568 RVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            VCGDCH   KM++++  REIVVRD +R+HH KDGKCSC+D+W
Sbjct: 595 SVCGDCHEFSKMVTKVFGREIVVRDGSRFHHMKDGKCSCHDYW 637



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 133/293 (45%), Gaps = 37/293 (12%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N ++  Y +  +V  A  + + MP RD VSW++++  Y +   P+  + +F  M+A   +
Sbjct: 203 NAVLAGYVRAGMVGVAREVFDGMPVRDEVSWSTVIGGYVKEGEPEVALGVFKNMVA-QGV 261

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           + +     + + A   LG    GK VH             + ++L+DMY+KCG    A+ 
Sbjct: 262 KANEAAIVTALSAAAQLGLLEQGKFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKE 321

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VFD++  ++  +W +M+   A  G   DA+++FE+  V   F  T++             
Sbjct: 322 VFDAMPRRDVFAWNSMICGLATHGLGHDAVQLFEKF-VSEGFCPTSI------------- 367

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY--ESCLFISNAI 279
             +F+                 ++ AC+   +++ G++   L +A  Y  ES +     +
Sbjct: 368 --TFV----------------GVLNACSRTGLVDEGRRYFKL-MAEKYDIESEMEHYGCM 408

Query: 280 VDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
           VD+ ++   +  A ++   MR   D V W +I+    +HG  +  + + ++++
Sbjct: 409 VDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHGLVDLGITVGNKLI 461



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/165 (23%), Positives = 72/165 (43%), Gaps = 3/165 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  + ++G+     L   LID Y KC  V  A  + + MP+RD  +W S++      
Sbjct: 285 KFVHEVVKRVGMTMSVNLGAALIDMYSKCGSVAAAKEVFDAMPRRDVFAWNSMICGLATH 344

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            L    + +F   ++ +   P    F  ++ AC   G    G++           + ++ 
Sbjct: 345 GLGHDAVQLFEKFVS-EGFCPTSITFVGVLNACSRTGLVDEGRRYFKLMAEKYDIESEME 403

Query: 143 K-SSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARSG 185
               +VD+ ++ GL   A  + + +++  + V W  +LSA  R G
Sbjct: 404 HYGCMVDLLSRAGLVQEAVELIEGMRIPPDPVLWGTILSACKRHG 448


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 210/589 (35%), Positives = 340/589 (57%), Gaps = 29/589 (4%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           V  +HAQ+I+ G  Q   +   L+ +  KC  + YA  + +     +   + +++  +  
Sbjct: 55  VLPIHAQLIRNGHSQDPFMVFELLRSCSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVS 114

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
           +    + I ++S ML  + + PD+++ AS++KACGS  A R G++VH+  +   F  + +
Sbjct: 115 SGNYLEAIQLYSRMLH-ESILPDNYLMASILKACGSQLALREGREVHSRALKLGFSSNRL 173

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V+  ++++Y KCG   +AR VF+                           E+ E    ++
Sbjct: 174 VRLRIMELYGKCGELGDARRVFE---------------------------EMPEDVVAKD 206

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
              WTA++ G V++     A  +F  M+ E V   +   +  ++ AC+    LE+G+ +H
Sbjct: 207 TVCWTAMIDGFVRNEETNRALEAFRGMQGENVR-PNEFTIVCVLSACSQLGALEIGRWVH 265

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             +     E  LF+ NA+++MY++C  I  A+ +F  M+ +DV+++ ++I G + +G++ 
Sbjct: 266 SYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSR 325

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           + + L+  MV   ++P  VTFVG++ ACSH GLV  G ++F SM  DY + P ++HY C+
Sbjct: 326 QAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCM 385

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           +DLL R G L+EA +LI+ M   PD      LLSACK H+N E+G +VA  L      D 
Sbjct: 386 VDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQADS 445

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            +Y+LLS+VYAS+  W+  ++VR  M    ++KEPG S IE     H F  G+  HP K+
Sbjct: 446 GTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSIEVNNEIHEFLLGDLRHPQKE 505

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            I+E L EL+  ++  GY P+   VL D+E  EKE  L  HSERLA+ YGL+ + P T++
Sbjct: 506 RIYEKLEELNRLLRLEGYHPEKEVVLQDIEDGEKEWALAMHSERLAICYGLISTEPCTMI 565

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           RV+KNLRVC DCH  +K+I++IT+R+IVVRD  R+H+F++G CSC D+W
Sbjct: 566 RVMKNLRVCYDCHSAIKLIAKITRRKIVVRDRNRFHYFENGACSCGDYW 614



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 132/291 (45%), Gaps = 41/291 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--- 66
           L+ C         + +H++ +KLG      +   +++ YGKC  +  A  + EEMP+   
Sbjct: 144 LKACGSQLALREGREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVFEEMPEDVV 203

Query: 67  -RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            +D V W +++  + +     + +  F  M   + ++P+ F    ++ AC  LGA  +G+
Sbjct: 204 AKDTVCWTAMIDGFVRNEETNRALEAFRGMQG-ENVRPNEFTIVCVLSACSQLGALEIGR 262

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            VH+         +  V ++L++MY++CG  + A+ VFD +K ++ +++  M+S  + +G
Sbjct: 263 WVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNG 322

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE---ID-AFYSFIEMRR----------- 230
           + + A+E+F     R L        G++ + +    +D  F  F  M R           
Sbjct: 323 KSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHY 382

Query: 231 --------------EGVDIV-------DPLVLSSIVGACANFAVLELGKQI 260
                         E  D++       D ++L +++ AC     LELG+Q+
Sbjct: 383 GCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQV 433


>gi|297740028|emb|CBI30210.3| unnamed protein product [Vitis vinifera]
          Length = 900

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/645 (34%), Positives = 340/645 (52%), Gaps = 66/645 (10%)

Query: 1   MQISHY-LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHH 59
            +I H+ L  + V AR   ++  + +HA +IK+G      + N LI  Y KC  +++   
Sbjct: 287 FRIDHFTLSTILVAARGLASMVGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVA 346

Query: 60  LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPD--------------- 104
           L E+M  RD ++W  ++TAY +  L    + +F  M A + +  +               
Sbjct: 347 LFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKA 406

Query: 105 ---------------HFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM 149
                           F    ++ ACG L   ++ KQ+H   +   F  +  ++++L+DM
Sbjct: 407 LAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDM 466

Query: 150 YAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA--MEIFEQAPVRNLFLWTA 207
             +CG                               R  DA  M            +WT+
Sbjct: 467 CTRCG-------------------------------RMADAQKMFSQGSFSQSGSIIWTS 495

Query: 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267
           ++ G  ++    +A   F + + EG  +VD +  ++++G C   A  E+GKQIH   +  
Sbjct: 496 MICGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKS 555

Query: 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327
           G+ S L + N+I+ MY+KCS++  A  +F  M   D+VSW  +I G   H Q +E L+++
Sbjct: 556 GFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVW 615

Query: 328 DEMVSAGVKPNEVTFVGLIYACSHVG--LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385
            +M  AG+KP+ VTFV +I A  H    LV   R+LF SM   Y I P+++HYT L+ +L
Sbjct: 616 SKMEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVL 675

Query: 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYI 445
              G L+EAE +I  MP EP+   W ALL AC+ H NT +G R A HLL++KP DPS+YI
Sbjct: 676 GYWGLLEEAEEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYI 735

Query: 446 LLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFE 505
           L+SN+Y++   W     VR+ M V   +K PG S+I      H FYA + SHP   +I  
Sbjct: 736 LVSNLYSAYGRWHCSDMVREEMRVKGFRKHPGRSWIIHENKVHSFYARDKSHPQAKDIHS 795

Query: 506 LLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVK 565
            L  L  E  + GYVPDTS VLH++E+ +K+  LF+HS ++A  YGLL + PG  +R+VK
Sbjct: 796 GLELLIMECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKIAATYGLLMTRPGRPIRIVK 855

Query: 566 NLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           N+ +CGDCH  +K +S +T REI +RDA+ +H F +G+CSC D+W
Sbjct: 856 NILLCGDCHTFLKYVSIVTGREIFLRDASGHHCFLNGQCSCKDYW 900



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 222/437 (50%), Gaps = 20/437 (4%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LHA +IK+G   Y  + N L+  YGKC  +     L +EMP RD  SW +++++  +  +
Sbjct: 211 LHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMM 270

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            ++   +F  M  +D  + DHF  ++++ A   L A+ +G+++HA  +   F  +  V +
Sbjct: 271 YERAFELFRDMRRIDGFRIDHFTLSTILVAARGL-ASMVGREIHAHVIKIGFESNISVIN 329

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +L+  Y KCG   +  A+F+ +++++ ++WT M++AY   G    A+E+F++ P RN   
Sbjct: 330 ALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSIS 389

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           + A++SG  Q+     A   F  M  EGV++ D   L+ ++ AC      ++ KQIHG +
Sbjct: 390 YNAILSGFCQNGEGSKALAFFCRMVEEGVELTD-FTLTGVLNACGLLMEAKISKQIHGFI 448

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDI--FGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           +  G+ S   I  A++DM  +C  +  A+ +   G   +   + WTS+I G A++ Q EE
Sbjct: 449 LKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYARNAQPEE 508

Query: 323 TLALY-DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK-----LFKSMIEDYGITPSLQ 376
            ++L+    +   +  ++V    ++  C  +     G++     L    + D G+  S  
Sbjct: 509 AISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGNS-- 566

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL--L 434
               ++ + S+  ++D+A  +   MP   D  +W  L++    HR  +    V + +   
Sbjct: 567 ----IITMYSKCSNMDDAIKVFNVMPAH-DIVSWNGLIAGHLLHRQGDEALSVWSKMEKA 621

Query: 435 SLKPEDPSSYILLSNVY 451
            +KP D  +++L+ + Y
Sbjct: 622 GIKP-DTVTFVLIISAY 637



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 189/424 (44%), Gaps = 68/424 (16%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           HY + L +  R+     +K +HA I KL    +  L N LI AY K  +V  A+ +   +
Sbjct: 93  HY-YLLDLSVRYDDVELIKAVHASIFKLAEDIH--LANALIVAYLKLGMVPNAYKVFVGL 149

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
              + VS+ ++++ + ++N  ++ + IF  M +   ++ + F F +++  C  L    LG
Sbjct: 150 SCPNVVSYTAMISGFAKSNRERQAMEIFFRMRS-SGIELNEFSFVAILTVCIRLLDLELG 208

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
            Q+HA  +   F +   V ++L+ +Y KCG  ++   +FD +  ++  SW  ++S+  + 
Sbjct: 209 CQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKE 268

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
              + A E+F                                +MRR     +D   LS+I
Sbjct: 269 MMYERAFELFR-------------------------------DMRRIDGFRIDHFTLSTI 297

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + A    A + +G++IH  VI +G+ES + + NA++  Y KC  I     +F +MR +DV
Sbjct: 298 LVAARGLASM-VGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDV 356

Query: 305 VSWTSIIV-------------------------------GTAQHGQAEETLALYDEMVSA 333
           ++WT +I                                G  Q+G+  + LA +  MV  
Sbjct: 357 ITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKALAFFCRMVEE 416

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
           GV+  + T  G++ AC  + +  K  K     I  +G   +      LLD+ +R G + +
Sbjct: 417 GVELTDFTLTGVLNACGLL-MEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMAD 475

Query: 394 AENL 397
           A+ +
Sbjct: 476 AQKM 479



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 122/261 (46%), Gaps = 7/261 (2%)

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
            A++ AY + G   +A ++F      N+  +TA++SG  +S  E  A   F  MR  G++
Sbjct: 127 NALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIE 186

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
           + +     +I+  C     LELG Q+H +VI +G+ +  F+SNA++ +Y KC  + +   
Sbjct: 187 L-NEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQ 245

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA-GVKPNEVTFVGLIYACSHVG 353
           +F  M  +D+ SW ++I    +    E    L+ +M    G + +  T   ++ A    G
Sbjct: 246 LFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAAR--G 303

Query: 354 LVGK-GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           L    GR++   +I+  G   ++     L+   ++ G +     L + M    D  TW  
Sbjct: 304 LASMVGREIHAHVIK-IGFESNISVINALIRFYTKCGSIKHVVALFEKMRVR-DVITWTE 361

Query: 413 LLSACKHHRNTEMGTRVANHL 433
           +++A      T++   V + +
Sbjct: 362 MITAYMEFGLTDLALEVFDKM 382


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 217/605 (35%), Positives = 332/605 (54%), Gaps = 38/605 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            +  A   + +T K LHA  +K G      +  +  D Y K  L   A ++ +EMP R+ 
Sbjct: 116 FKASASLHMPVTGKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNL 175

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            +W + ++   Q       I+ F   L +D  +P+   F + + AC  + +  LG+Q+H 
Sbjct: 176 ATWNAYMSNAVQDGRCLDAIAAFKKFLCVDG-EPNAITFCAFLNACADIVSLELGRQLHG 234

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V S + +D  V + L+D Y KCG   ++  VF  I                 SGR   
Sbjct: 235 FIVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRIG----------------SGR--- 275

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP--LVLSSIVGA 247
                     RN+  W +L++ LVQ+  E  A   F++ R+E    V+P   ++SS++ A
Sbjct: 276 ----------RNVVSWCSLLAALVQNHEEERACMVFLQARKE----VEPTDFMISSVLSA 321

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
           CA    LELG+ +H L +    E  +F+ +A+VD+Y KC  I  A+ +F  M  +++V+W
Sbjct: 322 CAELGGLELGRSVHALALKACVEENIFVGSALVDLYGKCGSIEYAEQVFREMPERNLVTW 381

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSA--GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
            ++I G A  G  +  L+L+ EM S   G+  + VT V ++ ACS  G V +G ++F+SM
Sbjct: 382 NAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSVLSACSRAGAVERGLQIFESM 441

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
              YGI P  +HY C++DLL RSG +D A   IK MP  P    W ALL ACK H  T++
Sbjct: 442 RGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILPTISVWGALLGACKMHGKTKL 501

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G   A  L  L P+D  ++++ SN+ ASA  W+  + VRK M  + +KK  GYS++    
Sbjct: 502 GKIAAEKLFELDPDDSGNHVVFSNMLASAGRWEEATIVRKEMRDIGIKKNVGYSWVAVKN 561

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
             H+F A ++ H    EI  +L +L  EMK+ GYVPD +  L D+E++EK  ++++HSE+
Sbjct: 562 RVHVFQAKDSFHEKNSEIQAMLAKLRGEMKKAGYVPDANLSLFDLEEEEKASEVWYHSEK 621

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           +A+A+GL+    G  +R+ KNLR+C DCH  +K IS+I  REI+VRD  R+H FKDG CS
Sbjct: 622 IALAFGLITLPRGVPIRITKNLRICIDCHSAIKFISKIVGREIIVRDNNRFHRFKDGWCS 681

Query: 606 CNDFW 610
           C D+W
Sbjct: 682 CKDYW 686


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/613 (35%), Positives = 337/613 (54%), Gaps = 43/613 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLG-LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L  C+  ++  T K LHA  +K G L +   + + L+D Y  C  V     + + M  R 
Sbjct: 309 LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRK 368

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
              W +++  Y+Q    ++ + +F  M     L  +    A +V AC   GA    + +H
Sbjct: 369 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIH 428

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              V      D  V+++L+DMY+                               R G+  
Sbjct: 429 GFVVKRGLDRDRFVQNTLMDMYS-------------------------------RLGKID 457

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR------EGVDIV----DP 238
            AM IF +   R+L  W  +++G V S +  DA     +M+       +G   V    + 
Sbjct: 458 IAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNS 517

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
           + L +I+ +CA  + L  GK+IH   I     + + + +A+VDMYAKC  +  ++ +F +
Sbjct: 518 ITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 577

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
           + +K+V++W  II+    HG  +E + L   M+  GVKPNEVTF+ +  ACSH G+V +G
Sbjct: 578 IPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEG 637

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP-TWAALLSAC 417
            ++F  M  DYG+ PS  HY C++DLL R+G + EA  L+  MP + ++   W++LL A 
Sbjct: 638 LRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGAS 697

Query: 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPG 477
           + H N E+G   A +L+ L+P   S Y+LL+N+Y+SA +W   ++VR+ M    V+KEPG
Sbjct: 698 RIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPG 757

Query: 478 YSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKER 537
            S+IE G   H F AG++SHP  +++   L  L   M++ GYVPDTS VLH++E+ EKE 
Sbjct: 758 CSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEI 817

Query: 538 QLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYH 597
            L  HSE+LA+A+G+L + PGT++RV KNLRVC DCH+  K IS+I  REI++RD  R+H
Sbjct: 818 LLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFH 877

Query: 598 HFKDGKCSCNDFW 610
            FK+G CSC D+W
Sbjct: 878 RFKNGTCSCGDYW 890



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 195/415 (46%), Gaps = 49/415 (11%)

Query: 23  KTLHAQIIKLG-LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           K +HA  ++ G L+ +  + NTL+  YGK   +  +  LL     RD V+W ++L++  Q
Sbjct: 222 KQVHAYGLRKGELNSF--IINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 279

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD- 140
                + +     M+ L+ ++PD F  +S++ AC  L   R GK++HA  + +   D++ 
Sbjct: 280 NEQLLEALEYLREMV-LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 338

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V S+LVDMY  C    + R VFD +  +    W AM++ Y+++   K+A+ +       
Sbjct: 339 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL------- 391

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
                                   FI M      + +   ++ +V AC         + I
Sbjct: 392 ------------------------FIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAI 427

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG V+  G +   F+ N ++DMY++   I  A  IFG+M  +D+V+W ++I G       
Sbjct: 428 HGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHH 487

Query: 321 EETLALYDEM------VSAG-----VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           E+ L L  +M      VS G     +KPN +T + ++ +C+ +  + KG+++    I++ 
Sbjct: 488 EDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN- 546

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
            +   +   + L+D+ ++ G L  +  +   +P + +  TW  ++ A   H N +
Sbjct: 547 NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQ 600



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 204/456 (44%), Gaps = 61/456 (13%)

Query: 23  KTLHAQIIKLGLHQYG----PLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           K +HA + K G   YG     + NTL++ Y KC      + + + + +R+ VSW S++++
Sbjct: 117 KQIHAHVYKFG---YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISS 173

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR---LGKQVHACFVLSP 135
                  +  +  F  ML  + ++P  F   S+V AC +L       +GKQVHA + L  
Sbjct: 174 LCSFEKWEMALEAFRCMLD-ENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHA-YGLRK 231

Query: 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
              +  + ++LV MY K G   +++ +  S   ++ V+W  +LS+               
Sbjct: 232 GELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSS--------------- 276

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
                           L Q+   ++A     EM  EGV+  D   +SS++ AC++  +L 
Sbjct: 277 ----------------LCQNEQLLEALEYLREMVLEGVE-PDEFTISSVLPACSHLEMLR 319

Query: 256 LGKQIHGLVIALG-YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
            GK++H   +  G  +   F+ +A+VDMY  C  +++ + +F  M  + +  W ++I G 
Sbjct: 320 TGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGY 379

Query: 315 AQHGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
           +Q+   +E L L+  M  SAG+  N  T  G++ AC   G   + ++     +   G+  
Sbjct: 380 SQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR-KEAIHGFVVKRGLDR 438

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA---CKHH---------- 420
                  L+D+ SR G +D A  +   M  + D  TW  +++     +HH          
Sbjct: 439 DRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITGYVFSEHHEDALLLLHKM 497

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           +N E         +SLKP   +   +L +  A +A+
Sbjct: 498 QNLERKVSKGASRVSLKPNSITLMTILPSCAALSAL 533



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 159/349 (45%), Gaps = 39/349 (11%)

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA-C 130
           W  +L +  ++NL ++ +  +  M+ L  ++PD++ F +L+KA   L    LGKQ+HA  
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLG-IKPDNYAFPALLKAVADLQDMELGKQIHAHV 123

Query: 131 FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
           +      D   V ++LV++Y KCG       VFD I  +N VS                 
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVS----------------- 166

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
                         W +L+S L        A  +F  M  E V+      L S+V AC+N
Sbjct: 167 --------------WNSLISSLCSFEKWEMALEAFRCMLDENVE-PSSFTLVSVVTACSN 211

Query: 251 FAVLE---LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
             + E   +GKQ+H   +  G E   FI N +V MY K   + ++K + G    +D+V+W
Sbjct: 212 LPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTW 270

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            +++    Q+ Q  E L    EMV  GV+P+E T   ++ ACSH+ ++  G++L    ++
Sbjct: 271 NTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK 330

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +  +  +    + L+D+      +     +   M F+     W A+++ 
Sbjct: 331 NGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 127/277 (45%), Gaps = 37/277 (13%)

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W  L+   V+S    +A  ++++M   G+   D     +++ A A+   +ELGKQIH  V
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIK-PDNYAFPALLKAVADLQDMELGKQIHAHV 123

Query: 265 IALGYE-SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
              GY    + ++N +V++Y KC D  A   +F R+  ++ VSW S+I       + E  
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVG-----LVGKG------RK------LFKSMI 366
           L  +  M+   V+P+  T V ++ ACS++      ++GK       RK      +  +++
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLV 243

Query: 367 EDYGITPSLQHYTCLL------DLLSRS---GHLDEAENLIKAMPF---------EPDEP 408
             YG    L     LL      DL++ +     L + E L++A+ +         EPDE 
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYI 445
           T +++L AC H      G  +  + L     D +S++
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 218/613 (35%), Positives = 337/613 (54%), Gaps = 43/613 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLG-LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L  C+  ++  T K LHA  +K G L +   + + L+D Y  C  V     + + M  R 
Sbjct: 309 LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRK 368

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
              W +++  Y+Q    ++ + +F  M     L  +    A +V AC   GA    + +H
Sbjct: 369 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIH 428

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              V      D  V+++L+DMY+                               R G+  
Sbjct: 429 GFVVKRGLDRDRFVQNTLMDMYS-------------------------------RLGKID 457

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR------EGVDIV----DP 238
            AM IF +   R+L  W  +++G V S +  DA     +M+       +G   V    + 
Sbjct: 458 IAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNLERKVSKGASRVSLKPNS 517

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
           + L +I+ +CA  + L  GK+IH   I     + + + +A+VDMYAKC  +  ++ +F +
Sbjct: 518 ITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVGSALVDMYAKCGCLQMSRKVFDQ 577

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
           + +K+V++W  II+    HG  +E + L   M+  GVKPNEVTF+ +  ACSH G+V +G
Sbjct: 578 IPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVKPNEVTFISVFAACSHSGMVDEG 637

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP-TWAALLSAC 417
            ++F  M  DYG+ PS  HY C++DLL R+G + EA  L+  MP + ++   W++LL A 
Sbjct: 638 LRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGAS 697

Query: 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPG 477
           + H N E+G   A +L+ L+P   S Y+LL+N+Y+SA +W   ++VR+ M    V+KEPG
Sbjct: 698 RIHNNLEIGEIAAQNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEPG 757

Query: 478 YSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKER 537
            S+IE G   H F AG++SHP  +++   L  L   M++ GYVPDTS VLH++E+ EKE 
Sbjct: 758 CSWIEHGDEVHKFVAGDSSHPQSEKLSGYLETLWERMRKEGYVPDTSCVLHNVEEDEKEI 817

Query: 538 QLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYH 597
            L  HSE+LA+A+G+L + PGT++RV KNLRVC DCH+  K IS+I  REI++RD  R+H
Sbjct: 818 LLCGHSEKLAIAFGILNTSPGTIIRVAKNLRVCNDCHLATKFISKIVDREIILRDVRRFH 877

Query: 598 HFKDGKCSCNDFW 610
            FK+G CSC D+W
Sbjct: 878 RFKNGTCSCGDYW 890



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 195/415 (46%), Gaps = 49/415 (11%)

Query: 23  KTLHAQIIKLG-LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           K +HA  ++ G L+ +  + NTL+  YGK   +  +  LL     RD V+W ++L++  Q
Sbjct: 222 KQVHAYGLRKGELNSF--IINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQ 279

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD- 140
                + +     M+ L+ ++PD F  +S++ AC  L   R GK++HA  + +   D++ 
Sbjct: 280 NEQLLEALEYLREMV-LEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALKNGSLDENS 338

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V S+LVDMY  C    + R VFD +  +    W AM++ Y+++   K+A+ +       
Sbjct: 339 FVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLL------- 391

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
                                   FI M      + +   ++ +V AC         + I
Sbjct: 392 ------------------------FIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAI 427

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG V+  G +   F+ N ++DMY++   I  A  IFG+M  +D+V+W ++I G       
Sbjct: 428 HGFVVKRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHH 487

Query: 321 EETLALYDEM------VSAG-----VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           E+ L L  +M      VS G     +KPN +T + ++ +C+ +  + KG+++    I++ 
Sbjct: 488 EDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN- 546

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
            +   +   + L+D+ ++ G L  +  +   +P + +  TW  ++ A   H N +
Sbjct: 547 NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGNGQ 600



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 204/456 (44%), Gaps = 61/456 (13%)

Query: 23  KTLHAQIIKLGLHQYG----PLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           K +HA + K G   YG     + NTL++ Y KC      + + + + +R+ VSW S++++
Sbjct: 117 KQIHAHVYKFG---YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISS 173

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR---LGKQVHACFVLSP 135
                  +  +  F  ML  + ++P  F   S+V AC +L       +GKQVHA + L  
Sbjct: 174 LCSFEKWEMALEAFRCMLD-ENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHA-YGLRK 231

Query: 136 FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
              +  + ++LV MY K G   +++ +  S   ++ V+W  +LS+               
Sbjct: 232 GELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSS--------------- 276

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
                           L Q+   ++A     EM  EGV+  D   +SS++ AC++  +L 
Sbjct: 277 ----------------LCQNEQLLEALEYLREMVLEGVE-PDEFTISSVLPACSHLEMLR 319

Query: 256 LGKQIHGLVIALG-YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
            GK++H   +  G  +   F+ +A+VDMY  C  +++ + +F  M  + +  W ++I G 
Sbjct: 320 TGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGY 379

Query: 315 AQHGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
           +Q+   +E L L+  M  SAG+  N  T  G++ AC   G   + ++     +   G+  
Sbjct: 380 SQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSR-KEAIHGFVVKRGLDR 438

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA---CKHH---------- 420
                  L+D+ SR G +D A  +   M  + D  TW  +++     +HH          
Sbjct: 439 DRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDLVTWNTMITGYVFSEHHEDALLLLHKM 497

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           +N E         +SLKP   +   +L +  A +A+
Sbjct: 498 QNLERKVSKGASRVSLKPNSITLMTILPSCAALSAL 533



 Score =  122 bits (305), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 159/349 (45%), Gaps = 39/349 (11%)

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA-C 130
           W  +L +  ++NL ++ +  +  M+ L  ++PD++ F +L+KA   L    LGKQ+HA  
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLG-IKPDNYAFPALLKAVADLQDMELGKQIHAHV 123

Query: 131 FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA 190
           +      D   V ++LV++Y KCG       VFD I  +N VS                 
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVS----------------- 166

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
                         W +L+S L        A  +F  M  E V+      L S+V AC+N
Sbjct: 167 --------------WNSLISSLCSFEKWEMALEAFRCMLDENVE-PSSFTLVSVVTACSN 211

Query: 251 FAVLE---LGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
             + E   +GKQ+H   +  G E   FI N +V MY K   + ++K + G    +D+V+W
Sbjct: 212 LPMPEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTW 270

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            +++    Q+ Q  E L    EMV  GV+P+E T   ++ ACSH+ ++  G++L    ++
Sbjct: 271 NTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKELHAYALK 330

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +  +  +    + L+D+      +     +   M F+     W A+++ 
Sbjct: 331 NGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGM-FDRKIGLWNAMIAG 378



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 127/277 (45%), Gaps = 37/277 (13%)

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W  L+   V+S    +A  ++++M   G+   D     +++ A A+   +ELGKQIH  V
Sbjct: 65  WIDLLRSKVRSNLLREAVLTYVDMIVLGIK-PDNYAFPALLKAVADLQDMELGKQIHAHV 123

Query: 265 IALGYE-SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
              GY    + ++N +V++Y KC D  A   +F R+  ++ VSW S+I       + E  
Sbjct: 124 YKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMA 183

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVG-----LVGKG------RK------LFKSMI 366
           L  +  M+   V+P+  T V ++ ACS++      ++GK       RK      +  +++
Sbjct: 184 LEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLV 243

Query: 367 EDYGITPSLQHYTCLL------DLLSRS---GHLDEAENLIKAMPF---------EPDEP 408
             YG    L     LL      DL++ +     L + E L++A+ +         EPDE 
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYI 445
           T +++L AC H      G  +  + L     D +S++
Sbjct: 304 TISSVLPACSHLEMLRTGKELHAYALKNGSLDENSFV 340


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/609 (35%), Positives = 343/609 (56%), Gaps = 33/609 (5%)

Query: 2   QISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
            +S   H L+  AR++ A+     HAQII++GL       N L++ Y KC LV+ A  L 
Sbjct: 46  HVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLF 105

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
           +EMP R  VSW +++ ++ Q    +K + +F  M   +      F  +S+V AC +    
Sbjct: 106 DEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQK-EGTSCSEFTVSSVVCACAAKCCV 164

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
              KQ+H  F L    D +V                                 TA+L  Y
Sbjct: 165 FECKQLHG-FALKTALDSNVFVG------------------------------TALLDVY 193

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
           A+ G  KDA  +FE  P R+   W+++V+G VQ+    +A   F   +  G++     + 
Sbjct: 194 AKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTIS 253

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           S++    A  A++E GKQ+  +    G  S +F+ ++++DMYAKC  I  A  +F  +  
Sbjct: 254 SALSACAARAALIE-GKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEE 312

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           K+VV W +I+ G ++H ++ E +  +++M   G+ PN++T++ ++ ACSH+GLV KGRK 
Sbjct: 313 KNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKY 372

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F  MI  + ++P++ HY+C++D+L R+G L EA++ I  MPF+     W +LL++C+ +R
Sbjct: 373 FDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYR 432

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           N E+    A HL  ++P +  +++LLSN+YA+   W+ V++ R L+   + KKE G S+I
Sbjct: 433 NLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWI 492

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E     H F  GE +HP   EI+  L +L  EMK+ GY   T   LHD+E+  K+  L  
Sbjct: 493 EIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRH 552

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSE+LA+ +G++    G  +R++KNLR+CGDCH  MK+ S IT+REI+VRD  R+HHFK+
Sbjct: 553 HSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKN 612

Query: 602 GKCSCNDFW 610
           G CSC +FW
Sbjct: 613 GYCSCGEFW 621


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/586 (35%), Positives = 328/586 (55%), Gaps = 34/586 (5%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
            + LH   +K    +     NTL+D Y KC  +  A  +  +M     VSW S + AY + 
Sbjct: 591  RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVRE 650

Query: 83   NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             L    I +F  M +   ++PD +   S+V AC    +   G+ VH+  + +    +  V
Sbjct: 651  GLYSDAIGLFDEMQS-KGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPV 709

Query: 143  KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
             ++L++MYAKC                               G  ++A  +F + PV+++
Sbjct: 710  TNALINMYAKC-------------------------------GSVEEARLVFSKIPVKDI 738

Query: 203  FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
              W  ++ G  Q+    +A   F++M+++     D + ++ ++ ACA  A L+ G++IHG
Sbjct: 739  VSWNTMIGGYSQNSLPNEALELFLDMQKQFKP--DDITMACVLPACAGLAALDKGREIHG 796

Query: 263  LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             ++  GY S L ++ A+VDMYAKC  ++ A+ +F  + +KD++SWT +I G   HG   E
Sbjct: 797  HILRRGYFSDLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNE 856

Query: 323  TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
             ++ ++EM  AG++P+E +F  ++ ACSH GL+ +G K F SM  + G+ P L+HY C++
Sbjct: 857  AISTFNEMRIAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVV 916

Query: 383  DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
            DLL+R G+L +A   I++MP +PD   W  LLS C+ H + ++  +VA H+  L+P++  
Sbjct: 917  DLLARMGNLSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEPDNTR 976

Query: 443  SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
             Y++L+NVYA A  W+ V K+RK M     K+ PG S+IE G   +IF AG + HP    
Sbjct: 977  YYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQNPGCSWIEVGGKFNIFVAGNSKHPQAKR 1036

Query: 503  IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
            I  LL +L  +M+   Y      VL + +  EKE     HSE+ A+A+G+L   PG  +R
Sbjct: 1037 IDVLLRKLTMQMQNEDYFSMFRYVLINEDDMEKEMIQCGHSEKSAMAFGILNLPPGRTVR 1096

Query: 563  VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
            V KN RVCGDCH + K +S+ TKREIV+RD+ R+HHFKDG CSC D
Sbjct: 1097 VSKNQRVCGDCHEMGKFMSKTTKREIVLRDSNRFHHFKDGLCSCRD 1142



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 114/468 (24%), Positives = 209/468 (44%), Gaps = 69/468 (14%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-DLVQYAHH 59
           + ++ Y   L++CA  +     K +H+ II  G+     L   L+  Y  C DLVQ    
Sbjct: 367 LGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQ-GRK 425

Query: 60  LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
           + +++       W  +++ Y +    ++++S+F  M  L  +  + + F  ++K   +LG
Sbjct: 426 IFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLG-VVGNCYTFTCVLKCFAALG 484

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
             +  K+VH   +   F  +  V +SL+  Y K G   +A  +FD +   + VSW +M++
Sbjct: 485 KVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMIN 544

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
               +G   + +EIF                               I+M   GV+ VD  
Sbjct: 545 GCVVNGFSGNGLEIF-------------------------------IQMLILGVE-VDLT 572

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
            L S++ A AN   L LG+ +HG  +   +   +  SN ++DMY+KC ++  A ++F +M
Sbjct: 573 TLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKM 632

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
               +VSWTS I    + G   + + L+DEM S GV+P+  T   +++AC+    + KGR
Sbjct: 633 GDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGR 692

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP----------------- 402
            +   +I++ G+  +L     L+++ ++ G ++EA  +   +P                 
Sbjct: 693 DVHSYVIKN-GMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQN 751

Query: 403 ----------------FEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
                           F+PD+ T A +L AC      + G  +  H+L
Sbjct: 752 SLPNEALELFLDMQKQFKPDDITMACVLPACAGLAALDKGREIHGHIL 799


>gi|225441064|ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Vitis vinifera]
          Length = 882

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/645 (34%), Positives = 340/645 (52%), Gaps = 66/645 (10%)

Query: 1   MQISHY-LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHH 59
            +I H+ L  + V AR   ++  + +HA +IK+G      + N LI  Y KC  +++   
Sbjct: 269 FRIDHFTLSTILVAARGLASMVGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVA 328

Query: 60  LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPD--------------- 104
           L E+M  RD ++W  ++TAY +  L    + +F  M A + +  +               
Sbjct: 329 LFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKA 388

Query: 105 ---------------HFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM 149
                           F    ++ ACG L   ++ KQ+H   +   F  +  ++++L+DM
Sbjct: 389 LAFFCRMVEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFILKFGFGSNACIEAALLDM 448

Query: 150 YAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDA--MEIFEQAPVRNLFLWTA 207
             +CG                               R  DA  M            +WT+
Sbjct: 449 CTRCG-------------------------------RMADAQKMFSQGSFSQSGSIIWTS 477

Query: 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267
           ++ G  ++    +A   F + + EG  +VD +  ++++G C   A  E+GKQIH   +  
Sbjct: 478 MICGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKS 537

Query: 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327
           G+ S L + N+I+ MY+KCS++  A  +F  M   D+VSW  +I G   H Q +E L+++
Sbjct: 538 GFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIAGHLLHRQGDEALSVW 597

Query: 328 DEMVSAGVKPNEVTFVGLIYACSHVG--LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385
            +M  AG+KP+ VTFV +I A  H    LV   R+LF SM   Y I P+++HYT L+ +L
Sbjct: 598 SKMEKAGIKPDTVTFVLIISAYRHTNSNLVDNCRRLFLSMKTIYHIDPTVEHYTSLVGVL 657

Query: 386 SRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYI 445
              G L+EAE +I  MP EP+   W ALL AC+ H NT +G R A HLL++KP DPS+YI
Sbjct: 658 GYWGLLEEAEEMINKMPIEPEASVWRALLDACRIHSNTTIGKRAAKHLLAMKPLDPSTYI 717

Query: 446 LLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFE 505
           L+SN+Y++   W     VR+ M V   +K PG S+I      H FYA + SHP   +I  
Sbjct: 718 LVSNLYSAYGRWHCSDMVREEMRVKGFRKHPGRSWIIHENKVHSFYARDKSHPQAKDIHS 777

Query: 506 LLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVK 565
            L  L  E  + GYVPDTS VLH++E+ +K+  LF+HS ++A  YGLL + PG  +R+VK
Sbjct: 778 GLELLIMECLKAGYVPDTSFVLHEVEEHQKKDFLFYHSAKIAATYGLLMTRPGRPIRIVK 837

Query: 566 NLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           N+ +CGDCH  +K +S +T REI +RDA+ +H F +G+CSC D+W
Sbjct: 838 NILLCGDCHTFLKYVSIVTGREIFLRDASGHHCFLNGQCSCKDYW 882



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 115/437 (26%), Positives = 222/437 (50%), Gaps = 20/437 (4%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LHA +IK+G   Y  + N L+  YGKC  +     L +EMP RD  SW +++++  +  +
Sbjct: 193 LHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKEMM 252

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            ++   +F  M  +D  + DHF  ++++ A   L A+ +G+++HA  +   F  +  V +
Sbjct: 253 YERAFELFRDMRRIDGFRIDHFTLSTILVAARGL-ASMVGREIHAHVIKIGFESNISVIN 311

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +L+  Y KCG   +  A+F+ +++++ ++WT M++AY   G    A+E+F++ P RN   
Sbjct: 312 ALIRFYTKCGSIKHVVALFEKMRVRDVITWTEMITAYMEFGLTDLALEVFDKMPARNSIS 371

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           + A++SG  Q+     A   F  M  EGV++ D   L+ ++ AC      ++ KQIHG +
Sbjct: 372 YNAILSGFCQNGEGSKALAFFCRMVEEGVELTD-FTLTGVLNACGLLMEAKISKQIHGFI 430

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDI--FGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           +  G+ S   I  A++DM  +C  +  A+ +   G   +   + WTS+I G A++ Q EE
Sbjct: 431 LKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMICGYARNAQPEE 490

Query: 323 TLALY-DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK-----LFKSMIEDYGITPSLQ 376
            ++L+    +   +  ++V    ++  C  +     G++     L    + D G+  S  
Sbjct: 491 AISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCHALKSGFLSDLGVGNS-- 548

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL--L 434
               ++ + S+  ++D+A  +   MP   D  +W  L++    HR  +    V + +   
Sbjct: 549 ----IITMYSKCSNMDDAIKVFNVMPAH-DIVSWNGLIAGHLLHRQGDEALSVWSKMEKA 603

Query: 435 SLKPEDPSSYILLSNVY 451
            +KP D  +++L+ + Y
Sbjct: 604 GIKP-DTVTFVLIISAY 619



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/424 (24%), Positives = 189/424 (44%), Gaps = 68/424 (16%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           HY + L +  R+     +K +HA I KL    +  L N LI AY K  +V  A+ +   +
Sbjct: 75  HY-YLLDLSVRYDDVELIKAVHASIFKLAEDIH--LANALIVAYLKLGMVPNAYKVFVGL 131

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
              + VS+ ++++ + ++N  ++ + IF  M +   ++ + F F +++  C  L    LG
Sbjct: 132 SCPNVVSYTAMISGFAKSNRERQAMEIFFRMRS-SGIELNEFSFVAILTVCIRLLDLELG 190

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
            Q+HA  +   F +   V ++L+ +Y KCG  ++   +FD +  ++  SW  ++S+  + 
Sbjct: 191 CQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVISSVVKE 250

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
              + A E+F                                +MRR     +D   LS+I
Sbjct: 251 MMYERAFELFR-------------------------------DMRRIDGFRIDHFTLSTI 279

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + A    A + +G++IH  VI +G+ES + + NA++  Y KC  I     +F +MR +DV
Sbjct: 280 LVAARGLASM-VGREIHAHVIKIGFESNISVINALIRFYTKCGSIKHVVALFEKMRVRDV 338

Query: 305 VSWTSIIV-------------------------------GTAQHGQAEETLALYDEMVSA 333
           ++WT +I                                G  Q+G+  + LA +  MV  
Sbjct: 339 ITWTEMITAYMEFGLTDLALEVFDKMPARNSISYNAILSGFCQNGEGSKALAFFCRMVEE 398

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
           GV+  + T  G++ AC  + +  K  K     I  +G   +      LLD+ +R G + +
Sbjct: 399 GVELTDFTLTGVLNACGLL-MEAKISKQIHGFILKFGFGSNACIEAALLDMCTRCGRMAD 457

Query: 394 AENL 397
           A+ +
Sbjct: 458 AQKM 461



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 122/261 (46%), Gaps = 7/261 (2%)

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
            A++ AY + G   +A ++F      N+  +TA++SG  +S  E  A   F  MR  G++
Sbjct: 109 NALIVAYLKLGMVPNAYKVFVGLSCPNVVSYTAMISGFAKSNRERQAMEIFFRMRSSGIE 168

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
           + +     +I+  C     LELG Q+H +VI +G+ +  F+SNA++ +Y KC  + +   
Sbjct: 169 L-NEFSFVAILTVCIRLLDLELGCQLHAIVIKMGFLNYTFVSNALMGLYGKCGYLDSVLQ 227

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA-GVKPNEVTFVGLIYACSHVG 353
           +F  M  +D+ SW ++I    +    E    L+ +M    G + +  T   ++ A    G
Sbjct: 228 LFDEMPHRDIASWNTVISSVVKEMMYERAFELFRDMRRIDGFRIDHFTLSTILVAAR--G 285

Query: 354 LVGK-GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           L    GR++   +I+  G   ++     L+   ++ G +     L + M    D  TW  
Sbjct: 286 LASMVGREIHAHVIK-IGFESNISVINALIRFYTKCGSIKHVVALFEKMRVR-DVITWTE 343

Query: 413 LLSACKHHRNTEMGTRVANHL 433
           +++A      T++   V + +
Sbjct: 344 MITAYMEFGLTDLALEVFDKM 364


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  401 bits (1030), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 208/602 (34%), Positives = 330/602 (54%), Gaps = 34/602 (5%)

Query: 10  LRVCARHQIALTVK-TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L+ C R      V  +LH+ +IK G      +   L+  Y K   +  A  + +E+P+++
Sbjct: 108 LKACTRLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKN 167

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW +I+  Y ++    + + +F  +L +  L+PD F    ++ AC  +G    G+ + 
Sbjct: 168 VVSWTAIICGYIESGCFGEALGLFRGLLEMG-LRPDSFTLVRILYACSRVGDLASGRWID 226

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
                S    +  V +SLVDMYAKC                               G  +
Sbjct: 227 GYMRESGSVGNVFVATSLVDMYAKC-------------------------------GSME 255

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A  +F+    +++  W+AL+ G   +    +A   F EM+RE V   D   +  +  AC
Sbjct: 256 EARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVR-PDCYAMVGVFSAC 314

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           +    LELG    GL+    + S   +  A++D YAKC  +  AK++F  MRRKD V + 
Sbjct: 315 SRLGALELGNWARGLMDGDEFLSNPVLGTALIDFYAKCGSVAQAKEVFKGMRRKDCVVFN 374

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++I G A  G       ++ +MV  G++P+  TFVGL+  C+H GLV  G + F  M   
Sbjct: 375 AVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVDDGHRYFSGMSSV 434

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           + +TP+++HY C++DL +R+G L EA++LI++MP E +   W ALL  C+ H++T++   
Sbjct: 435 FSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVWGALLGGCRLHKDTQLAEH 494

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
           V   L+ L+P +   Y+LLSN+Y+++  W    K+R  ++   ++K PG S++E     H
Sbjct: 495 VLKQLIELEPWNSGHYVLLSNIYSASHRWDEAEKIRSSLNQKGMQKLPGCSWVEVDGVVH 554

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F  G+TSHPL  +I+E L  L  +++  GY P T  VL D+E++EKE  L  HSE+LAV
Sbjct: 555 EFLVGDTSHPLSHKIYEKLESLFKDLREAGYNPTTEFVLFDVEEEEKEYFLGCHSEKLAV 614

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+ L+ +    V+RVVKNLRVCGDCH  +K++S++T REI+VRD  R+HHF +G CSC D
Sbjct: 615 AFALISTGAKDVIRVVKNLRVCGDCHEAIKLVSKVTGREIIVRDNNRFHHFTEGSCSCRD 674

Query: 609 FW 610
           +W
Sbjct: 675 YW 676



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/228 (30%), Positives = 117/228 (51%), Gaps = 4/228 (1%)

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F Q P  N+FL+  L+ G+V +    DA   +  MR+ G    D      ++ AC 
Sbjct: 54  ATVVFAQTPHPNIFLYNTLIRGMVSNDAFRDAVSVYASMRQHGF-APDNFTFPFVLKACT 112

Query: 250 NFA-VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
                  +G  +H LVI  G++  +F+   +V +Y+K   +  A+ +F  +  K+VVSWT
Sbjct: 113 RLPHYFHVGLSLHSLVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWT 172

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           +II G  + G   E L L+  ++  G++P+  T V ++YACS VG +  GR +   M E 
Sbjct: 173 AIICGYIESGCFGEALGLFRGLLEMGLRPDSFTLVRILYACSRVGDLASGRWIDGYMRES 232

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G   ++   T L+D+ ++ G ++EA  +   M  E D   W+AL+  
Sbjct: 233 -GSVGNVFVATSLVDMYAKCGSMEEARRVFDGM-VEKDVVCWSALIQG 278


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/558 (37%), Positives = 315/558 (56%), Gaps = 34/558 (6%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           + +AH + +++PQ D V + ++   Y + + P + I + S +L    L PD + F+SL+K
Sbjct: 85  MDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLC-SGLLPDDYTFSSLLK 143

Query: 114 ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS 173
           AC  L A   GKQ+H   V     D+  V  +L++MY  C   + AR VFD I     V+
Sbjct: 144 ACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVA 203

Query: 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233
           + A++++ AR+ R  +A+ +F                                E++  G+
Sbjct: 204 YNAIITSCARNSRPNEALALFR-------------------------------ELQESGL 232

Query: 234 DIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
              D  +L ++  +CA    L+LG+ IH  V   G++  + ++ A++DMYAKC  +  A 
Sbjct: 233 KPTDVTMLVAL-SSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAV 291

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
            +F  M R+D  +W+++IV  A HG   + +++  EM  A V+P+E+TF+G++YACSH G
Sbjct: 292 SVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTG 351

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
           LV +G + F SM  +YGI PS++HY C++DLL R+G L+EA   I  +P +P    W  L
Sbjct: 352 LVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTL 411

Query: 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVK 473
           LS+C  H N EM   V   +  L       Y++LSN+ A    W  V+ +RK+M      
Sbjct: 412 LSSCSSHGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGAL 471

Query: 474 KEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH-DMEQ 532
           K PG S IE     H F++G+  H     +   L EL  E+K  GYVPDTS V + D+E 
Sbjct: 472 KVPGCSSIEVNNVVHEFFSGDGVHSTSTILHHALDELVKELKLAGYVPDTSLVFYADIED 531

Query: 533 KEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRD 592
           +EKE  L +HSE+LA+ YGLL + PGT +RVVKNLRVC DCH   K IS I  R+I++RD
Sbjct: 532 EEKEIVLRYHSEKLAITYGLLNTPPGTTIRVVKNLRVCVDCHNAAKFISLIFGRQIILRD 591

Query: 593 ATRYHHFKDGKCSCNDFW 610
             R+HHFKDGKCSC D+W
Sbjct: 592 VQRFHHFKDGKCSCGDYW 609



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 168/402 (41%), Gaps = 88/402 (21%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CAR +     K LH   +KLG+     +  TLI+ Y  C+ V  A  + +++ +   
Sbjct: 142 LKACARLKALEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCV 201

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V++ +I+T+  + + P + +++F   L    L+P        + +C  LGA  LG+ +H 
Sbjct: 202 VAYNAIITSCARNSRPNEALALFRE-LQESGLKPTDVTMLVALSSCALLGALDLGRWIHE 260

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               + F     V ++L+DMYAKCG  ++A +VF  +  +++ +W+AM+ AYA  G    
Sbjct: 261 YVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQ 320

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +                                 EM++  V   D +    I+ AC+
Sbjct: 321 AISMLR-------------------------------EMKKAKVQ-PDEITFLGILYACS 348

Query: 250 NFAVLELGKQI-------HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           +  ++E G +        +G+V ++ +  C+                    D+ GR    
Sbjct: 349 HTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMI-------------------DLLGRA--- 386

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
                          G+ EE     DE+    +KP  + +  L+ +CS  G V   + + 
Sbjct: 387 ---------------GRLEEACKFIDEL---PIKPTPILWRTLLSSCSSHGNVEMAKLVI 428

Query: 363 KSMIE---DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           + + E    +G       Y  L +L +R+G  D+  +L K M
Sbjct: 429 QRIFELDDSHG-----GDYVILSNLCARNGRWDDVNHLRKMM 465


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/609 (35%), Positives = 343/609 (56%), Gaps = 33/609 (5%)

Query: 2   QISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
            +S   H L+  AR++ A+     HAQII++GL       N L++ Y KC LV+ A  L 
Sbjct: 19  HVSELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLF 78

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
           +EMP R  VSW +++ ++ Q    +K + +F  M   +      F  +S+V AC +    
Sbjct: 79  DEMPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQK-EGTSCSEFTVSSVVCACAAKCCV 137

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
              KQ+H  F L    D +V                                 TA+L  Y
Sbjct: 138 FECKQLHG-FALKTALDSNVFVG------------------------------TALLDVY 166

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
           A+ G  KDA  +FE  P R+   W+++V+G VQ+    +A   F   +  G++     + 
Sbjct: 167 AKCGLVKDANLVFECMPERSDVTWSSMVAGYVQNELYEEALVLFHRAQAMGLEHNQFTIS 226

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           S++    A  A++E GKQ+  +    G  S +F+ ++++DMYAKC  I  A  +F  +  
Sbjct: 227 SALSACAARAALIE-GKQVQAVSCKTGIGSNIFVISSLIDMYAKCGIIEEAYTVFSSVEE 285

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           K+VV W +I+ G ++H ++ E +  +++M   G+ PN++T++ ++ ACSH+GLV KGRK 
Sbjct: 286 KNVVLWNAILSGFSRHVRSLEAMIYFEKMQQMGICPNDITYISVLSACSHLGLVEKGRKY 345

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F  MI  + ++P++ HY+C++D+L R+G L EA++ I  MPF+     W +LL++C+ +R
Sbjct: 346 FDLMIRVHNVSPNVLHYSCMVDILGRAGLLHEAKDFIDRMPFDATASMWGSLLASCRIYR 405

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           N E+    A HL  ++P +  +++LLSN+YA+   W+ V++ R L+   + KKE G S+I
Sbjct: 406 NLELAEVAAKHLFEIEPHNAGNHVLLSNIYAANDRWEEVARARNLLKESKAKKERGKSWI 465

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           E     H F  GE +HP   EI+  L +L  EMK+ GY   T   LHD+E+  K+  L  
Sbjct: 466 EIKHKVHSFMVGERNHPRIVEIYLKLEDLVGEMKKIGYKAKTEHDLHDVEESRKQELLRH 525

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSE+LA+ +G++    G  +R++KNLR+CGDCH  MK+ S IT+REI+VRD  R+HHFK+
Sbjct: 526 HSEKLALTFGIMVLPHGAPIRIMKNLRICGDCHSFMKLASSITEREIIVRDTNRFHHFKN 585

Query: 602 GKCSCNDFW 610
           G CSC +FW
Sbjct: 586 GYCSCGEFW 594


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/588 (36%), Positives = 319/588 (54%), Gaps = 34/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   ++ G      +   L+D Y KC  ++ A  L + M +R+ VSW S++ AY Q 
Sbjct: 256 KEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQN 315

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P++ + IF  ML  + ++P        + AC  LG    G+ +H   V      +  V
Sbjct: 316 ENPKEAMVIFQKMLD-EGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRNVSV 374

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SL+ MY KC   + A ++F  ++ +  VS                             
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRTIVS----------------------------- 405

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W A++ G  Q+   I+A   F +M+   V   D     S++ A A  ++    K IHG
Sbjct: 406 --WNAMILGFAQNGRPIEALNYFSQMQARTVK-PDTFTYVSVITAIAELSITHHAKWIHG 462

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           +V+    +  +F++ A+VDMYAKC  I+ A+ IF  M  + V +W ++I G   HG  + 
Sbjct: 463 VVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKA 522

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L++EM    ++PN VTF+ +I ACSH GLV  G K F  M E+Y I PS+ HY  ++
Sbjct: 523 ALELFEEMQKGTIRPNGVTFLSVISACSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMV 582

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G L+EA + I  MP +P    + A+L AC+ H+N     +VA  L  L PED  
Sbjct: 583 DLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKVAERLFELNPEDGG 642

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            ++LL+N+Y +A+MW+ V +VR  M    ++K PG S +E     H F++G T+HP   +
Sbjct: 643 YHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPSSKK 702

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L +L  ++K  GYVPDT+ +L  +E   KE+ L  HSE+LA+++GLL +  GT + 
Sbjct: 703 IYAFLEKLICQIKEAGYVPDTNLIL-GLEDDVKEQLLSSHSEKLAISFGLLNTTAGTTIH 761

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V KNLRVC DCH   K IS +T REI+VRD  R+HHFK+G CSC D+W
Sbjct: 762 VRKNLRVCADCHNATKYISLVTGREIIVRDMQRFHHFKNGACSCGDYW 809



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 169/349 (48%), Gaps = 53/349 (15%)

Query: 29  IIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKT 88
           I K GL+Q       L+  + +   V  A  + E + ++ +V + ++L  + + +   K 
Sbjct: 60  IFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKA 119

Query: 89  ISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVD 148
           +  F  M   D+++P  + F  L+K CG     R+GK++H   V S F  D    + L +
Sbjct: 120 LKFFVRMRD-DEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLEN 178

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           MYAKC   + AR                               ++F++ P R+L  W  +
Sbjct: 179 MYAKCRQVHEAR-------------------------------KVFDRMPERDLVSWNTI 207

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPL----------VLSSIVGACANFAVLELGK 258
           V+G           YS   M R  +++V+ +           + S++ A +   ++ +GK
Sbjct: 208 VAG-----------YSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGK 256

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           +IHG  +  G++S + I+ A+VDMYAKC  +  A+ +F  M  ++VVSW S+I    Q+ 
Sbjct: 257 EIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNE 316

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
             +E + ++ +M+  GVKP +V+ +G ++AC+ +G + +GR + K  +E
Sbjct: 317 NPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVE 365



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 9/180 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  +   A   I    K +H  +++  L +   +   L+D Y KC  +  A  + + M 
Sbjct: 441 YVSVITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMS 500

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +R   +W +++  Y    + +  + +F  M     ++P+   F S++ AC   G    G 
Sbjct: 501 ERHVTTWNAMIDGYGTHGIGKAALELFEEMQK-GTIRPNGVTFLSVISACSHSGLVEAGL 559

Query: 126 Q----VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSA 180
           +    +   + + P  D      ++VD+  + G  N A      + +K +V+ + AML A
Sbjct: 560 KCFHMMKENYSIEPSMDH---YGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGA 616


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
            sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/606 (35%), Positives = 337/606 (55%), Gaps = 39/606 (6%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L  CA   +    + LH   +K GL+    + N L+  YG+C  +     +   M   D 
Sbjct: 491  LSSCAGLGLLAAGQQLHCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDV 550

Query: 70   VSWASILTAYNQANLP-QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW SI+     +  P  +++ +FS M+    L P+   F + + A   L    LGKQ+H
Sbjct: 551  VSWNSIMGVMASSQAPITESVQVFSNMMK-SGLVPNKVTFVNFLAALTPLSVLELGKQIH 609

Query: 129  ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK-LKNSVSWTAMLSAYARSGRK 187
            +  +     +D+ V ++L+  YAK G  ++   +F  +   ++++SW +M+S Y  +G  
Sbjct: 610  SVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHL 669

Query: 188  KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
            ++AM+                                 + M  E   ++D    S ++ A
Sbjct: 670  QEAMDCV------------------------------CLMMHSE--QMMDHCTFSIVLNA 697

Query: 248  CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
            CA+ A LE G ++H   +    ES + + +A+VDMY+KC  I  A  +F  M +K+  SW
Sbjct: 698  CASVAALERGMEMHAFGLRSHLESDVVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSW 757

Query: 308  TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
             S+I G A+HG   + L +++EM  +G  P+ VTFV ++ ACSH GLV +G   F+ ++E
Sbjct: 758  NSMISGYARHGLGRKALEIFEEMQESGESPDHVTFVSVLSACSHAGLVERGLDYFE-LME 816

Query: 368  DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC---KHHRNTE 424
            DYGI P ++HY+C++DLL R+G LD+ +  +K MP +P+   W  +L AC   KH    +
Sbjct: 817  DYGILPRIEHYSCVIDLLGRAGELDKIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKID 876

Query: 425  MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
            +GT  +  LL L+P++P +Y+L S  +A+   W+  +K R  M    VKKE G S++   
Sbjct: 877  LGTEASRMLLELEPQNPVNYVLSSKFHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLT 936

Query: 485  KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
             G H F AG+ SHP   EI+E L  L  +++  GYVP T  VLHD+E++ KE  L +HSE
Sbjct: 937  DGVHTFIAGDRSHPNTKEIYEKLNFLIQKIRNAGYVPLTEYVLHDLEEENKEELLRYHSE 996

Query: 545  RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
            +LAVA+ L +S  G  +R++KNLRVCGDCH   + IS+I  R+I++RD+ R+HHFKDGKC
Sbjct: 997  KLAVAFVLTRSSSGGPIRIMKNLRVCGDCHTAFRYISQIVGRQIILRDSIRFHHFKDGKC 1056

Query: 605  SCNDFW 610
            SC D+W
Sbjct: 1057 SCGDYW 1062



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 191/404 (47%), Gaps = 44/404 (10%)

Query: 23  KTLHAQIIKLG-LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           + +HA +++ G +++   + N L++ Y KC  +  A  + + M  RD +SW +I+TA +Q
Sbjct: 402 REVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIITALDQ 461

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
               +  +  +  M   + + P +F   S + +C  LG    G+Q+H   V      D  
Sbjct: 462 NGYCEAAMMNYCLMRQ-NSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVKWGLYLDTS 520

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V ++LV MY +CG  +    +F+S+   + VSW +++   A S           QAP+  
Sbjct: 521 VSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASS-----------QAPI-- 567

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                             ++   F  M + G+ + + +   + + A    +VLELGKQIH
Sbjct: 568 -----------------TESVQVFSNMMKSGL-VPNKVTFVNFLAALTPLSVLELGKQIH 609

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQA 320
            +++  G      + NA++  YAK  D+ + + +F RM  R+D +SW S+I G   +G  
Sbjct: 610 SVMLKHGVTEDNAVDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHL 669

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL----FKSMIEDYGITPSLQ 376
           +E +     M+ +    +  TF  ++ AC+ V  + +G ++     +S +E   +  S  
Sbjct: 670 QEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDVVVES-- 727

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
               L+D+ S+ G +D A  +  +M  + +E +W +++S    H
Sbjct: 728 ---ALVDMYSKCGRIDYASKVFHSMS-QKNEFSWNSMISGYARH 767



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 208/446 (46%), Gaps = 45/446 (10%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           ++LH +++K GL     L N L+++Y K   +  A  + + MP R+ VSW  +++ +  +
Sbjct: 85  ESLHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLS 144

Query: 83  NLPQKTISIFSTMLALDK-LQPDHFVFASLVKACGSLGATRLG--KQVHACFVLSPFCDD 139
            LP+    +F  ML      +P  F F S+++AC   G  RLG   QVH     + F  +
Sbjct: 145 GLPEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSN 204

Query: 140 DVVKSSLVDMYAKC--GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
             V ++L+ MY  C  G P  A+ VFD+  +++ ++W A++S YA+ G   DA+  F   
Sbjct: 205 TTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRG---DAICTF--- 258

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
               LF         ++ R     F S              L+ ++ + +C+    L L 
Sbjct: 259 ---TLFRAMQYDDSGIELRPTEHTFGS--------------LITATYLSSCS----LGLL 297

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG--TA 315
            Q+   V+  G  S L++ +A+V  +A+   +  AKDI+  ++ ++ V+   +I G    
Sbjct: 298 DQLFVRVLKSGCSSDLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQ 357

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL----VGKGRKLFKSMIEDYGI 371
           QHG+A   +       SA V  N  T+V L+ A +        + KGR++   ++    I
Sbjct: 358 QHGEAAAEI-FMGARDSAAV--NVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHI 414

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
              +     L+++ ++ G +D+A  + + M    D  +W  +++A   +   E    + N
Sbjct: 415 YRKIAVSNGLVNMYAKCGAIDKACRVFQLMEAR-DRISWNTIITALDQNGYCEAA--MMN 471

Query: 432 H-LLSLKPEDPSSYILLSNVYASAAM 456
           + L+      PS++  +S + + A +
Sbjct: 472 YCLMRQNSIGPSNFAAISGLSSCAGL 497



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 96/402 (23%), Positives = 171/402 (42%), Gaps = 48/402 (11%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQ--YAHHLLEEMPQRDHVSWASILTAYNQA 82
           +H  + K        + N LI  YG C +     A  + +  P RD ++W ++++ Y + 
Sbjct: 192 VHGLVSKTEFTSNTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKR 251

Query: 83  NLPQKTISIFSTMLALD---KLQPDHFVFASLVKACGSLGATRLG--KQVHACFVLSPFC 137
                T ++F  M   D   +L+P    F SL+ A   L +  LG   Q+    VL   C
Sbjct: 252 GDAICTFTLFRAMQYDDSGIELRPTEHTFGSLITAT-YLSSCSLGLLDQLFV-RVLKSGC 309

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
             D+   S                              A++SA+AR G   +A +I+   
Sbjct: 310 SSDLYVGS------------------------------ALVSAFARHGMLDEAKDIYLGL 339

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
             RN      L++GLV+ ++   A   F+  R      VD  V+  ++ A A F+  E G
Sbjct: 340 KERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNVDTYVV--LLSAIAEFSTAEQG 397

Query: 258 ----KQIHGLVIALGY-ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
               +++H  V+  G+    + +SN +V+MYAKC  I  A  +F  M  +D +SW +II 
Sbjct: 398 LRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISWNTIIT 457

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
              Q+G  E  +  Y  M    + P+    +  + +C+ +GL+  G++L    ++ +G+ 
Sbjct: 458 ALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLGLLAAGQQLHCDAVK-WGLY 516

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
                   L+ +    G + E   +  +M    D  +W +++
Sbjct: 517 LDTSVSNALVKMYGECGRMSECWEIFNSMSAH-DVVSWNSIM 557


>gi|145333528|ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21065
 gi|332658994|gb|AEE84394.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 595

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 324/559 (57%), Gaps = 34/559 (6%)

Query: 54  VQYAHHLLEEMPQRDHVS-WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLV 112
           + YAH +  ++ +  +V  W +++  Y +        S++  M     ++PD   +  L+
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLI 128

Query: 113 KACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSV 172
           KA  ++   RLG+ +H+  + S F     V++SL+ +YA CG   +A  VFD +  K+ V
Sbjct: 129 KAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
           +W ++++ +A +G+ ++A+ +                               + EM  +G
Sbjct: 189 AWNSVINGFAENGKPEEALAL-------------------------------YTEMNSKG 217

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
           +   D   + S++ ACA    L LGK++H  +I +G    L  SN ++D+YA+C  +  A
Sbjct: 218 IK-PDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEA 276

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA-GVKPNEVTFVGLIYACSH 351
           K +F  M  K+ VSWTS+IVG A +G  +E + L+  M S  G+ P E+TFVG++YACSH
Sbjct: 277 KTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSH 336

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
            G+V +G + F+ M E+Y I P ++H+ C++DLL+R+G + +A   IK+MP +P+   W 
Sbjct: 337 CGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWR 396

Query: 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
            LL AC  H ++++       +L L+P     Y+LLSN+YAS   W  V K+RK M    
Sbjct: 397 TLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDG 456

Query: 472 VKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDME 531
           VKK PG+S +E G   H F  G+ SHP  D I+  L E+   ++  GYVP  S+V  D+E
Sbjct: 457 VKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVE 516

Query: 532 QKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVR 591
           ++EKE  + +HSE++A+A+ L+ +   + + VVKNLRVC DCH+ +K++S++  REIVVR
Sbjct: 517 EEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVR 576

Query: 592 DATRYHHFKDGKCSCNDFW 610
           D +R+HHFK+G CSC D+W
Sbjct: 577 DRSRFHHFKNGSCSCQDYW 595



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 103/173 (59%), Gaps = 1/173 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +T+H+ +I+ G      + N+L+  Y  C  V  A+ + ++MP++D V+W S++  + + 
Sbjct: 141 ETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAEN 200

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P++ +++++ M +   ++PD F   SL+ AC  +GA  LGK+VH   +      +   
Sbjct: 201 GKPEEALALYTEMNS-KGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHS 259

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
            + L+D+YA+CG    A+ +FD +  KNSVSWT+++   A +G  K+A+E+F+
Sbjct: 260 SNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFK 312



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 134/334 (40%), Gaps = 41/334 (12%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA+       K +H  +IK+GL +     N L+D Y +C  V+ A  L +EM  ++ 
Sbjct: 229 LSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNS 288

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
           VSW S++         ++ I +F  M + + L P    F  ++ AC   G  + G    +
Sbjct: 289 VSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFR 348

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARS 184
           ++   + + P  +       +VD+ A+ G    A     S+ ++ N V W  +L A    
Sbjct: 349 RMREEYKIEPRIEH---FGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVH 405

Query: 185 GRKKDA----MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           G    A    ++I +  P  N      L+S +  S           E R   V  +   +
Sbjct: 406 GDSDLAEFARIQILQLEP--NHSGDYVLLSNMYAS-----------EQRWSDVQKIRKQM 452

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA--KDIFGR 298
           L   V      +++E+G ++H  ++               D     SD I A  K++ GR
Sbjct: 453 LRDGVKKVPGHSLVEVGNRVHEFLMG--------------DKSHPQSDAIYAKLKEMTGR 498

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           +R +  V   S +    +  + E  +  + E ++
Sbjct: 499 LRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIA 532


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 204/607 (33%), Positives = 341/607 (56%), Gaps = 38/607 (6%)

Query: 10  LRVCARHQIALT-VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L +C  H+ +L+    +H  I+  G  Q   L   LI  Y     V YA  + ++  +R 
Sbjct: 83  LILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRT 142

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT----RLG 124
              W ++  A   A   ++ + ++  M  +  ++ D F +  ++KAC +   T      G
Sbjct: 143 IYVWNALFRALTLAGHGEEVLGLYWKMNRIG-VESDRFTYTYVLKACVASECTVNHLMKG 201

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           K++HA      +     + ++LVDMYA+ G  + A  VF  +                  
Sbjct: 202 KEIHAHLTRRGYSSHVYIMTTLVDMYARFGCVDYASYVFGGM------------------ 243

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-DPLVLSS 243
                        PVRN+  W+A+++   ++    +A  +F EM RE  D   + + + S
Sbjct: 244 -------------PVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNSVTMVS 290

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++ ACA+ A LE GK IHG ++  G +S L + +A+V MY +C  +   + +F RM  +D
Sbjct: 291 VLQACASLAALEQGKLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFDRMHDRD 350

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           VVSW S+I     HG  ++ + +++EM++ G  P  VTFV ++ ACSH GLV +G++LF+
Sbjct: 351 VVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFE 410

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
           +M  D+GI P ++HY C++DLL R+  LDEA  +++ M  EP    W +LL +C+ H N 
Sbjct: 411 TMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNV 470

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           E+  R +  L +L+P++  +Y+LL+++YA A MW  V +V+KL+    ++K PG  ++E 
Sbjct: 471 ELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEV 530

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
            +  + F + +  +PL ++I   L +L  +MK +GY+P T  VL+++E +EKER +  HS
Sbjct: 531 RRKMYSFVSVDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHS 590

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           E+LA+A+GL+ +  G  +R+ KNLR+C DCH+  K IS+  ++EI+VRD  R+H FK+G 
Sbjct: 591 EKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGV 650

Query: 604 CSCNDFW 610
           CSC D+W
Sbjct: 651 CSCGDYW 657



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 150/336 (44%), Gaps = 34/336 (10%)

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162
           P    +  L+  CG   +     +VH   + +    D  + + L+ MY+  G  + AR V
Sbjct: 75  PSQQTYELLILCCGHRSSLSDALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 163 FDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
           FD  + +    W A+  A   +G  ++ + ++          W     G+     E D F
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLY----------WKMNRIGV-----ESDRF 179

Query: 223 -YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
            Y++              VL + V +      L  GK+IH  +   GY S ++I   +VD
Sbjct: 180 TYTY--------------VLKACVASECTVNHLMKGKEIHAHLTRRGYSSHVYIMTTLVD 225

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV--SAGVKPNE 339
           MYA+   +  A  +FG M  ++VVSW+++I   A++G+A E L  + EM+  +    PN 
Sbjct: 226 MYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMRETKDSSPNS 285

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           VT V ++ AC+ +  + +G KL    I   G+   L   + L+ +  R G L+  + +  
Sbjct: 286 VTMVSVLQACASLAALEQG-KLIHGYILRRGLDSILPVISALVTMYGRCGKLEVGQRVFD 344

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
            M  + D  +W +L+S+   H   +   ++   +L+
Sbjct: 345 RM-HDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLA 379


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  400 bits (1028), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 207/601 (34%), Positives = 343/601 (57%), Gaps = 40/601 (6%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGP---LPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           C   Q     + +HA ++K    +Y P   L   LI  Y +C  +  A ++L+ MP+R+ 
Sbjct: 51  CVERQALGEGRQVHAHMVKA---RYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNV 107

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW ++++ Y+Q+    + + +F  ML     + + F  A+++ +C    + +  +QVH+
Sbjct: 108 VSWTAMISGYSQSGRHAEALELFIRMLRAG-CKANEFTLATVLTSCPVHQSIQQVEQVHS 166

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V + F     V SSL+DMY K G    AR VFD +  +++VS TA++S YA+ G   +
Sbjct: 167 LVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDE 226

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+++F Q           L S  +Q                      + +  ++++ + +
Sbjct: 227 ALDLFRQ-----------LYSSGMQC---------------------NYVTFTTLLTSLS 254

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
             A L  GKQ+HGL++       + + N+++DMY+KC  ++ ++ +F  M ++  +SW +
Sbjct: 255 GLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNA 314

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +++G  +HG  +E + L+  M    VKP+ VT + ++  CSH GLV +G  +F  ++++ 
Sbjct: 315 MLMGYGRHGIGQEVVQLFRTMTEE-VKPDSVTLLAVLSGCSHGGLVDEGLDIFDLIVKEQ 373

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
                + HY C++DLL RSG L +A +LI+ MPFEP    W +LL AC+ H N  +G  V
Sbjct: 374 NAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPTPAIWGSLLGACRVHINVSVGEVV 433

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  LL ++P +  +Y++LSN+YA+A MW+ V +VRKLM    V KEP  S+I   K  H 
Sbjct: 434 AQKLLDMEPGNAGNYVILSNIYAAAGMWKDVFRVRKLMLENTVTKEPAKSWIILDKVIHT 493

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F++ E  HP K +I   + E+  ++K  G+VPD S VLHD++ ++KER L  HSE+LA+ 
Sbjct: 494 FHSSERFHPRKKDINAKIKEVYVDVKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAIT 553

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GL+ + PG  ++V+KNLR+C DCH   K +S++  REI +RD  R+H  KDG C+C D+
Sbjct: 554 FGLMNTPPGLTIQVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLLKDGACTCGDY 613

Query: 610 W 610
           W
Sbjct: 614 W 614



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 170/343 (49%), Gaps = 40/343 (11%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           + + + AC    A   G+QVHA  V + +     + + L+ +Y +CG  ++AR V D + 
Sbjct: 44  YDAAITACVERQALGEGRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMP 103

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            +N VSWTAM+S Y++SGR  +A+E+                               FI 
Sbjct: 104 ERNVVSWTAMISGYSQSGRHAEALEL-------------------------------FIR 132

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M R G    +   L++++ +C     ++  +Q+H LV+   +ES +F+ ++++DMY K  
Sbjct: 133 MLRAGCK-ANEFTLATVLTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSG 191

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
           +I  A+ +F  +  +D VS T+II G AQ G  +E L L+ ++ S+G++ N VTF  L+ 
Sbjct: 192 NIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFRQLYSSGMQCNYVTFTTLLT 251

Query: 348 ACSHVGLVGKGRKLFKSMI-EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
           + S +  +  G+++   ++ ++      LQ+   L+D+ S+ G L  +  +   MP +  
Sbjct: 252 SLSGLASLNYGKQVHGLILRKELPFFIVLQN--SLIDMYSKCGKLLYSRRVFDNMP-QRS 308

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPE-DPSSYILLS 448
             +W A+L     H    +G  V     ++  E  P S  LL+
Sbjct: 309 AISWNAMLMGYGRH---GIGQEVVQLFRTMTEEVKPDSVTLLA 348



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 103/186 (55%), Gaps = 1/186 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C  HQ    V+ +H+ ++K     +  + ++L+D YGK   +Q A  + + +P+RD 
Sbjct: 149 LTSCPVHQSIQQVEQVHSLVVKTNFESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDT 208

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS  +I++ Y Q  L  + + +F  + +   +Q ++  F +L+ +   L +   GKQVH 
Sbjct: 209 VSCTAIISGYAQLGLDDEALDLFRQLYS-SGMQCNYVTFTTLLTSLSGLASLNYGKQVHG 267

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +        V+++SL+DMY+KCG    +R VFD++  ++++SW AML  Y R G  ++
Sbjct: 268 LILRKELPFFIVLQNSLIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQE 327

Query: 190 AMEIFE 195
            +++F 
Sbjct: 328 VVQLFR 333


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/605 (34%), Positives = 337/605 (55%), Gaps = 34/605 (5%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L+ + VC       ++K LH   +K        + N  + +Y KC  + YA  +   +  
Sbjct: 399 LNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRS 458

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           +   SW +++  + Q+N P+ ++     M  +  L PD F   SL+ AC  L + RLGK+
Sbjct: 459 KTVNSWNALIGGHAQSNDPRLSLDAHLQM-KISGLLPDSFTVCSLLSACSKLKSLRLGKE 517

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           VH   + +    D  V  S++ +Y  CG     +A+FD+++ K+ VSW  +++ Y ++G 
Sbjct: 518 VHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGF 577

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
              A+ +F     R + L+   + G+                            +  + G
Sbjct: 578 PDRALGVF-----RQMVLYGIQLCGIS---------------------------MMPVFG 605

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           AC+    L LG++ H   +    E   FI+ +++DMYAK   I  +  +F  ++ K   S
Sbjct: 606 ACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS 665

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W ++I+G   HG A+E + L++EM   G  P+++TF+G++ AC+H GL+ +G +    M 
Sbjct: 666 WNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMK 725

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLI-KAMPFEPDEPTWAALLSACKHHRNTEM 425
             +G+ P+L+HY C++D+L R+G LD+A  ++ + M  E D   W +LLS+C+ H+N EM
Sbjct: 726 SSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEM 785

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G +VA  L  L+PE P +Y+LLSN+YA    W+ V KVR+ M+ M ++K+ G S+IE  +
Sbjct: 786 GEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNR 845

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
               F  GE      +EI  L + L+ ++ + GY PDT SV HD+ ++EK  QL  HSE+
Sbjct: 846 KVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEK 905

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+ YGL+K+  GT +RV KNLR+C DCH   K+IS++ +REIVVRD  R+HHFK+G CS
Sbjct: 906 LALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCS 965

Query: 606 CNDFW 610
           C D+W
Sbjct: 966 CGDYW 970



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 147/314 (46%), Gaps = 30/314 (9%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   +I  Y  C     +  + + +  ++   W +++++Y++  L  + +  F  M++  
Sbjct: 122 LCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTT 181

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            L PDHF +  ++KAC  +    +G  VH   V +   +D  V ++LV  Y   G   +A
Sbjct: 182 DLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDA 241

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
             +FD +  +N VSW +M+  ++ +G  +++                 L+ G +   N  
Sbjct: 242 LQLFDIMPERNLVSWNSMIRVFSDNGFSEESF----------------LLLGEMMEENGD 285

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
            AF            + D   L +++  CA    + LGK +HG  + L  +  L ++NA+
Sbjct: 286 GAF------------MPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNAL 333

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG--VKP 337
           +DMY+KC  I  A+ IF     K+VVSW +++ G +  G    T  +  +M++ G  VK 
Sbjct: 334 MDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKA 393

Query: 338 NEVTFVGLIYACSH 351
           +EVT +  +  C H
Sbjct: 394 DEVTILNAVPVCFH 407



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 169/396 (42%), Gaps = 36/396 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ CA          +H  ++K GL +   + N L+  YG    V  A  L + MP+R+ 
Sbjct: 194 IKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNL 253

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALD---KLQPDHFVFASLVKACGSLGATRLGKQ 126
           VSW S++  ++     +++  +   M+  +      PD     +++  C       LGK 
Sbjct: 254 VSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKG 313

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           VH   V      + V+ ++L+DMY+KCG   NA+ +F     KN VSW  M+  ++  G 
Sbjct: 314 VHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGD 373

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLSSIV 245
                ++  Q                               M   G D+  D + + + V
Sbjct: 374 THGTFDVLRQ-------------------------------MLAGGEDVKADEVTILNAV 402

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
             C + + L   K++H   +   +     ++NA V  YAKC  +  A+ +F  +R K V 
Sbjct: 403 PVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVN 462

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SW ++I G AQ      +L  + +M  +G+ P+  T   L+ ACS +  +  G+++   +
Sbjct: 463 SWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFI 522

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           I ++ +   L  Y  +L L    G L   + L  AM
Sbjct: 523 IRNW-LERDLFVYLSVLSLYIHCGELCTVQALFDAM 557



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 148/330 (44%), Gaps = 38/330 (11%)

Query: 111 LVKACGSLGATRLGKQVHACFVLSP-FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           L++A G      +G+++H     S    +DDV+ + ++ MYA CG P+++R VFD+++ K
Sbjct: 90  LLQASGKRKDIEMGRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSK 149

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
           N   W A++S+Y+R+    + +E                               +FIEM 
Sbjct: 150 NLFQWNAVISSYSRNELYDEVLE-------------------------------TFIEMI 178

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289
                + D      ++ ACA  + + +G  +HGLV+  G    +F+ NA+V  Y     +
Sbjct: 179 STTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFV 238

Query: 290 IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS----AGVKPNEVTFVGL 345
             A  +F  M  +++VSW S+I   + +G +EE+  L  EM+         P+  T V +
Sbjct: 239 TDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTV 298

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP 405
           +  C+    +G G+ +    ++   +   L     L+D+ S+ G +  A+ + K M    
Sbjct: 299 LPVCAREREIGLGKGVHGWAVK-LRLDKELVLNNALMDMYSKCGCITNAQMIFK-MNNNK 356

Query: 406 DEPTWAALLSACKHHRNTEMGTRVANHLLS 435
           +  +W  ++       +T     V   +L+
Sbjct: 357 NVVSWNTMVGGFSAEGDTHGTFDVLRQMLA 386


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/605 (34%), Positives = 337/605 (55%), Gaps = 34/605 (5%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L+ + VC       ++K LH   +K        + N  + +Y KC  + YA  +   +  
Sbjct: 149 LNAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRS 208

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           +   SW +++  + Q+N P+ ++     M  +  L PD F   SL+ AC  L + RLGK+
Sbjct: 209 KTVNSWNALIGGHAQSNDPRLSLDAHLQM-KISGLLPDSFTVCSLLSACSKLKSLRLGKE 267

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           VH   + +    D  V  S++ +Y  CG     +A+FD+++ K+ VSW  +++ Y ++G 
Sbjct: 268 VHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGF 327

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
              A+ +F     R + L+   + G+                            +  + G
Sbjct: 328 PDRALGVF-----RQMVLYGIQLCGIS---------------------------MMPVFG 355

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           AC+    L LG++ H   +    E   FI+ +++DMYAK   I  +  +F  ++ K   S
Sbjct: 356 ACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTAS 415

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W ++I+G   HG A+E + L++EM   G  P+++TF+G++ AC+H GL+ +G +    M 
Sbjct: 416 WNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMK 475

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLI-KAMPFEPDEPTWAALLSACKHHRNTEM 425
             +G+ P+L+HY C++D+L R+G LD+A  ++ + M  E D   W +LLS+C+ H+N EM
Sbjct: 476 SSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEM 535

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G +VA  L  L+PE P +Y+LLSN+YA    W+ V KVR+ M+ M ++K+ G S+IE  +
Sbjct: 536 GEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELNR 595

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
               F  GE      +EI  L + L+ ++ + GY PDT SV HD+ ++EK  QL  HSE+
Sbjct: 596 KVFSFVVGERFLDGFEEIKSLWSILEMKISKMGYRPDTMSVQHDLSEEEKIEQLRGHSEK 655

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+ YGL+K+  GT +RV KNLR+C DCH   K+IS++ +REIVVRD  R+HHFK+G CS
Sbjct: 656 LALTYGLIKTSEGTTIRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFKNGVCS 715

Query: 606 CNDFW 610
           C D+W
Sbjct: 716 CGDYW 720



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/410 (23%), Positives = 185/410 (45%), Gaps = 43/410 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VCAR +     K +H   +KL L +   L N L+D Y KC  +  A  + +    ++ 
Sbjct: 49  LPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNV 108

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLAL-DKLQPDHFVFASLVKACGSLGATRLGKQVH 128
           VSW +++  ++       T  +   MLA  + ++ D     + V  C         K++H
Sbjct: 109 VSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELH 168

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              +   F  +++V ++ V  YAKCG  + A+ VF  I+ K   SW A++  +A+S   +
Sbjct: 169 CYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPR 228

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            +++   Q            +SGL+                       D   + S++ AC
Sbjct: 229 LSLDAHLQMK----------ISGLLP----------------------DSFTVCSLLSAC 256

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           +    L LGK++HG +I    E  LF+  +++ +Y  C ++   + +F  M  K +VSW 
Sbjct: 257 SKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWN 316

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK----LFKS 364
           ++I G  Q+G  +  L ++ +MV  G++   ++ + +  ACS +  +  GR+      K 
Sbjct: 317 TVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKH 376

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           ++ED            L+D+ +++G + ++  +   +  E    +W A++
Sbjct: 377 LLEDDAFIA-----CSLIDMYAKNGSITQSSKVFNGLK-EKSTASWNAMI 420



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/339 (23%), Positives = 145/339 (42%), Gaps = 36/339 (10%)

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALD---KLQPDHFVFASLVKACGSLGATRL 123
           R+ VSW S++  ++     +++  +   M+  +      PD     +++  C       L
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           GK VH   V      + V+ ++L+DMY+KCG   NA+ +F   K+ N+            
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIF---KMNNN------------ 105

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLS 242
                           +N+  W  +V G     +    F    +M   G D+  D + + 
Sbjct: 106 ----------------KNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTIL 149

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           + V  C + + L   K++H   +   +     ++NA V  YAKC  +  A+ +F  +R K
Sbjct: 150 NAVPVCFHESFLPSLKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSK 209

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
            V SW ++I G AQ      +L  + +M  +G+ P+  T   L+ ACS +  +  G+++ 
Sbjct: 210 TVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVH 269

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
             +I ++ +   L  Y  +L L    G L   + L  AM
Sbjct: 270 GFIIRNW-LERDLFVYLSVLSLYIHCGELCTVQALFDAM 307


>gi|326520445|dbj|BAK07481.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 596

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/550 (38%), Positives = 315/550 (57%), Gaps = 39/550 (7%)

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           +P  D  S  ++L     +  P+  +++    LA     PD   +  L++AC  L A R 
Sbjct: 83  LPDPDPFSLNTVLRIAASSAHPRIALALHRRRLA----PPDTHTYPPLLQACTRLLALRE 138

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL--KNSVSWTAMLSAY 181
           G+ +HA    +       VK+SLV  Y  CGL  +A  VFD I +  +N VSW ++++ +
Sbjct: 139 GESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLERNLVSWNSVMNGF 198

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
           A +GR  + + IF                     R  ++A     ++  +G  IV     
Sbjct: 199 AANGRPNEVLTIF---------------------RETLEA-----DLMPDGFTIV----- 227

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR- 300
            S++ ACA    L LG+++H     +G      + NA++D+YAKC  +  A  +F  M  
Sbjct: 228 -SVLTACAEIGALTLGRRVHVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGV 286

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            + VVSWTS+IVG A +G  ++ L L+  M    + P ++T VG++YACSH GLV  G +
Sbjct: 287 ARTVVSWTSLIVGLAGNGFGKDALELFGLMERERLIPTDITMVGVLYACSHCGLVDDGFR 346

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            F  M + YGI P ++H  C++DLL R+G ++EA N I  MP EP+   W  LL AC  H
Sbjct: 347 YFNEMQDKYGIAPGIEHLGCMVDLLGRAGRVEEAHNYITTMPVEPNAVVWRTLLGACAMH 406

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
           +  E+G      L+ L P     Y+LLSN+YA+   W     +RK M+   V+K PG+S 
Sbjct: 407 KKLELGEAAWARLVELDPGHSGDYVLLSNLYAAVGRWADAHVLRKTMATHGVRKNPGHSL 466

Query: 481 IEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLF 540
           +E     + F  G+ SHP  D+I++ L E+   ++ +GYVP TS+VL D+E++EKE  L 
Sbjct: 467 VELRNSVYEFVMGDRSHPESDQIYQTLAEIAERLRCQGYVPRTSNVLADIEEEEKETALN 526

Query: 541 WHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFK 600
           +HSERLA+A+ LLKS+PG+ +R+VKNLR+CGDCH+V+K+IS++  REI+VRD +R+HHFK
Sbjct: 527 YHSERLAIAFALLKSLPGSPIRIVKNLRMCGDCHLVIKLISKVYDREIIVRDRSRFHHFK 586

Query: 601 DGKCSCNDFW 610
            G+CSC D+W
Sbjct: 587 GGECSCKDYW 596



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 104/188 (55%), Gaps = 4/188 (2%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP--QR 67
           L+ C R       ++LHA+  K GL     + N+L+  YG C L + AH + +E+P  +R
Sbjct: 127 LQACTRLLALREGESLHAEAAKNGLVALVFVKNSLVHHYGACGLFESAHRVFDEIPVLER 186

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           + VSW S++  +     P + ++IF   L  D L PD F   S++ AC  +GA  LG++V
Sbjct: 187 NLVSWNSVMNGFAANGRPNEVLTIFRETLEAD-LMPDGFTIVSVLTACAEIGALTLGRRV 245

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARSGR 186
           H          +  V ++L+D+YAKCG   +A  VF+ + + +  VSWT+++   A +G 
Sbjct: 246 HVFASKVGLVGNSHVGNALIDLYAKCGGVEDAWKVFEEMGVARTVVSWTSLIVGLAGNGF 305

Query: 187 KKDAMEIF 194
            KDA+E+F
Sbjct: 306 GKDALELF 313


>gi|15237442|ref|NP_199458.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170604|sp|Q9FHF9.1|PP419_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g46460, mitochondrial; Flags: Precursor
 gi|10177583|dbj|BAB10814.1| unnamed protein product [Arabidopsis thaliana]
 gi|332008005|gb|AED95388.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/570 (36%), Positives = 325/570 (57%), Gaps = 36/570 (6%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+++  Y +   V  A  L ++MP ++ +SW +++   +Q     + + +F  ML    +
Sbjct: 163 NSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSGEALDLFKNMLRC-CI 221

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +     F  ++ AC +  A  +G QVH   +   F  ++ V +SL+  YA C    ++R 
Sbjct: 222 KSTSRPFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRK 281

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VFD                           ++ EQ  V     WTAL+SG   ++   DA
Sbjct: 282 VFDE--------------------------KVHEQVAV-----WTALLSGYSLNKKHEDA 310

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M R  + + +    +S + +C+    L+ GK++HG+ + LG E+  F+ N++V 
Sbjct: 311 LSIFSGMLRNSI-LPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGNSLVV 369

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY+   ++  A  +F ++ +K +VSW SIIVG AQHG+ +    ++ +M+    +P+E+T
Sbjct: 370 MYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDEIT 429

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYG-ITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           F GL+ ACSH G + KGRKLF  M      I   +QHYTC++D+L R G L EAE LI+ 
Sbjct: 430 FTGLLSACSHCGFLEKGRKLFYYMSSGINHIDRKIQHYTCMVDILGRCGKLKEAEELIER 489

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           M  +P+E  W ALLSAC+ H + + G + A  + +L  +  ++Y+LLSN+YASA  W +V
Sbjct: 490 MVVKPNEMVWLALLSACRMHSDVDRGEKAAAAIFNLDSKSSAAYVLLSNIYASAGRWSNV 549

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
           SK+R  M    + K+PG S++      H F++G+  H     I+E L  L  ++K  GY 
Sbjct: 550 SKLRVKMKKNGIMKKPGSSWVVIRGKKHEFFSGDQPHC--SRIYEKLEFLREKLKELGYA 607

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           PD  S LHD+E ++KE  L++HSERLA+A+GL+ +V G+ + V+KNLRVC DCH V+K+I
Sbjct: 608 PDYRSALHDVEDEQKEEMLWYHSERLAIAFGLINTVEGSAVTVMKNLRVCEDCHTVIKLI 667

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           S +  REIV+RD  R+HHFK+G CSC D+W
Sbjct: 668 SGVVGREIVLRDPIRFHHFKNGTCSCGDYW 697



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/431 (22%), Positives = 196/431 (45%), Gaps = 45/431 (10%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   +I  Y + + +  A +L +EMP RD VSW S+++   +       + +F  M    
Sbjct: 68  LYTKMITGYTRSNRLVDALNLFDEMPVRDVVSWNSMISGCVECGDMNTAVKLFDEM---- 123

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
              P+  V +                 V+ CF                    + G  + A
Sbjct: 124 ---PERSVVS-------------WTAMVNGCF--------------------RSGKVDQA 147

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
             +F  + +K++ +W +M+  Y + G+  DA+++F+Q P +N+  WT ++ GL Q+    
Sbjct: 148 ERLFYQMPVKDTAAWNSMVHGYLQFGKVDDALKLFKQMPGKNVISWTTMICGLDQNERSG 207

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           +A   F  M R  +        + ++ ACAN     +G Q+HGL+I LG+    ++S ++
Sbjct: 208 EALDLFKNMLRCCIKSTSR-PFTCVITACANAPAFHMGIQVHGLIIKLGFLYEEYVSASL 266

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           +  YA C  I  ++ +F     + V  WT+++ G + + + E+ L+++  M+   + PN+
Sbjct: 267 ITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKKHEDALSIFSGMLRNSILPNQ 326

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
            TF   + +CS +G +  G+++    ++  G+         L+ + S SG++++A ++  
Sbjct: 327 STFASGLNSCSALGTLDWGKEMHGVAVK-LGLETDAFVGNSLVVMYSDSGNVNDAVSVFI 385

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
            + F+    +W +++  C  H   +    +   ++ L  E     I  + + ++ +    
Sbjct: 386 KI-FKKSIVSWNSIIVGCAQHGRGKWAFVIFGQMIRLNKEPDE--ITFTGLLSACSHCGF 442

Query: 460 VSKVRKLMSVM 470
           + K RKL   M
Sbjct: 443 LEKGRKLFYYM 453



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 140/336 (41%), Gaps = 65/336 (19%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  IIKLG      +  +LI  Y  C  +  +  + +E        W ++L+ Y+    
Sbjct: 247 VHGLIIKLGFLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVAVWTALLSGYSLNKK 306

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            +  +SIFS ML  + + P+   FAS + +C +LG    GK++H   V      D  V +
Sbjct: 307 HEDALSIFSGMLR-NSILPNQSTFASGLNSCSALGTLDWGKEMHGVAVKLGLETDAFVGN 365

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SLV MY+  G  N+A +VF  I  K+ VSW +++   A+ GR K A  IF Q        
Sbjct: 366 SLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQHGRGKWAFVIFGQ-------- 417

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                                I + +E     D +  + ++ AC++   LE G+++    
Sbjct: 418 --------------------MIRLNKEP----DEITFTGLLSACSHCGFLEKGRKLF--- 450

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
                    ++S+ I  +  K        DI GR                   G+ +E  
Sbjct: 451 --------YYMSSGINHIDRKIQHYTCMVDILGRC------------------GKLKEAE 484

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            L + MV   VKPNE+ ++ L+ AC     V +G K
Sbjct: 485 ELIERMV---VKPNEMVWLALLSACRMHSDVDRGEK 517



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 80/370 (21%), Positives = 140/370 (37%), Gaps = 63/370 (17%)

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           S R  +A E+F Q P  ++ L+T +++G  +S   +DA   F EM      + D +  +S
Sbjct: 48  SRRIDEAREVFNQVPSPHVSLYTKMITGYTRSNRLVDALNLFDEM-----PVRDVVSWNS 102

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++  C                                    +C D+  A  +F  M  + 
Sbjct: 103 MISGC-----------------------------------VECGDMNTAVKLFDEMPERS 127

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           VVSWT+++ G  + G+ ++   L+ +M    VK +   +  +++     G V    KLFK
Sbjct: 128 VVSWTAMVNGCFRSGKVDQAERLFYQM---PVK-DTAAWNSMVHGYLQFGKVDDALKLFK 183

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGH-LDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
            M     I  S     C LD   RSG  LD  +N+++        P +  +++AC +   
Sbjct: 184 QMPGKNVI--SWTTMICGLDQNERSGEALDLFKNMLRCCIKSTSRP-FTCVITACANAPA 240

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
             MG +V   ++ L          L   Y SA++    +  +++    +V  E  +  + 
Sbjct: 241 FHMGIQVHGLIIKLG--------FLYEEYVSASLITFYANCKRIGDSRKVFDEKVHEQVA 292

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWH 542
                   Y+    H     IF       + M R   +P+ S+    +        L W 
Sbjct: 293 VWTALLSGYSLNKKHEDALSIF-------SGMLRNSILPNQSTFASGLNSCSALGTLDWG 345

Query: 543 SERLAVAYGL 552
            E   VA  L
Sbjct: 346 KEMHGVAVKL 355



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/163 (26%), Positives = 78/163 (47%), Gaps = 8/163 (4%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   +KLGL     + N+L+  Y     V  A  +  ++ ++  VSW SI+    Q 
Sbjct: 346 KEMHGVAVKLGLETDAFVGNSLVVMYSDSGNVNDAVSVFIKIFKKSIVSWNSIIVGCAQH 405

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD--DD 140
              +    IF  M+ L+K +PD   F  L+ AC   G    G+++   + +S   +  D 
Sbjct: 406 GRGKWAFVIFGQMIRLNK-EPDEITFTGLLSACSHCGFLEKGRKLF--YYMSSGINHIDR 462

Query: 141 VVK--SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
            ++  + +VD+  +CG    A  + + + +K N + W A+LSA
Sbjct: 463 KIQHYTCMVDILGRCGKLKEAEELIERMVVKPNEMVWLALLSA 505


>gi|357119334|ref|XP_003561397.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g62890-like [Brachypodium distachyon]
          Length = 635

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/530 (38%), Positives = 316/530 (59%), Gaps = 13/530 (2%)

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           NLP++ +  F+ +LA           ++ + A     ++ LG  VHA  V +    D  V
Sbjct: 117 NLPRRNLHSFTFLLA---------SISNHLDATDHRASSFLGSHVHALAVKAGAAGDLYV 167

Query: 143 KSSLVDMYAKCGLPNNARAVFDSI-KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           +++L   Y  CG     R VFD + ++++ V+W A+L+ Y R+G  + A E+FE+ PVR+
Sbjct: 168 RNALTHFYGVCGDVGAMRTVFDELPRVRDVVTWNAVLAGYVRAGMVRAAREVFEEMPVRD 227

Query: 202 LFLWTALVSGLVQSRNEID-AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
              W+ LV G V+   E+D A   F +M  +GV + +  V++++  A A   +LE G+ +
Sbjct: 228 EVSWSTLVGGYVKE-GELDVALGVFRDMVEKGVRVNEAAVVTAL-SAAAQMGLLEHGRFV 285

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H +V   G    + +  A+VDM++KC  +  A+++F  M R+DV +W ++I G A HG  
Sbjct: 286 HEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASHGLG 345

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           ++ + L+   +  G+ P ++TFVG++ ACS  GLV +GR+ FK M++ Y I P ++HY C
Sbjct: 346 QDAVELFWRFLDEGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEMEHYGC 405

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DLL R+G + EA  LI+ M   PD   W  +LSACK H   ++G  V N L+ L+P  
Sbjct: 406 MVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSACKTHNLVDLGITVGNKLIELEPAH 465

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
              Y+LL+++YA A  W  V +VRKLMS     K  G+S +E     H F  G+  H   
Sbjct: 466 DGHYVLLASIYAKAKKWDEVREVRKLMSSRGTGKSAGWSLMEAQGNLHKFLVGDMDHKDS 525

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
            +I+ +L  ++  +   GYVPD SSVLHD+  +EK   +  HSERLA+AYG + +  G+ 
Sbjct: 526 VQIYNMLDMINRRLADAGYVPDVSSVLHDIGDEEKVHAIKVHSERLAIAYGFIVTEVGSP 585

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +R+VKNL+VCGDCH   KM++++  REI+VRD +R+HH K+GKCSC D+W
Sbjct: 586 IRIVKNLQVCGDCHEFSKMVTKVFNREIIVRDGSRFHHMKEGKCSCLDYW 635



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 77/153 (50%), Gaps = 1/153 (0%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N ++  Y +  +V+ A  + EEMP RD VSW++++  Y +       + +F  M+    +
Sbjct: 201 NAVLAGYVRAGMVRAAREVFEEMPVRDEVSWSTLVGGYVKEGELDVALGVFRDMVE-KGV 259

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           + +     + + A   +G    G+ VH     +       V ++LVDM++KCG    AR 
Sbjct: 260 RVNEAAVVTALSAAAQMGLLEHGRFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVARE 319

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
           VFD +  ++  +W AM+   A  G  +DA+E+F
Sbjct: 320 VFDGMPRRDVFAWNAMICGLASHGLGQDAVELF 352



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/160 (21%), Positives = 70/160 (43%), Gaps = 3/160 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  + + G+     +   L+D + KC  V  A  + + MP+RD  +W +++      
Sbjct: 283 RFVHEVVQRTGMPVSVNVGAALVDMFSKCGCVAVAREVFDGMPRRDVFAWNAMICGLASH 342

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            L Q  + +F   L  + L P    F  ++ AC   G    G++     V     + ++ 
Sbjct: 343 GLGQDAVELFWRFLD-EGLWPTDITFVGVLNACSRCGLVAEGRRYFKLMVDKYRIEPEME 401

Query: 143 K-SSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSA 180
               +VD+  + GL + A  + + + +  + V W  +LSA
Sbjct: 402 HYGCMVDLLGRAGLVSEAIELIEGMHIAPDPVLWGTVLSA 441


>gi|357140731|ref|XP_003571917.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 695

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/588 (36%), Positives = 329/588 (55%), Gaps = 35/588 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LH   ++LG      + + L D Y K  L+  A  + ++MPQ+D V+W +++  Y +   
Sbjct: 141 LHCVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGN 200

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            +  +  F  M     +  D  V  S++ A G L    L + +H+C + S F  +  V++
Sbjct: 201 LEAAVIAFRDMRREGLVGADQHVLCSVLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRN 260

Query: 145 SLVDMYAKCG-LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           +L DMYAK   + N AR V       N VS T+++  Y  +    D +E           
Sbjct: 261 ALTDMYAKAADMDNAARVVKIDQGSLNVVSATSLIDGYIET----DCIE----------- 305

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
                            A   FIE+RR+GV+  +    SS++  CA  A+LE G Q+H  
Sbjct: 306 ----------------KALLMFIELRRQGVE-PNEFTFSSMIKGCAMQALLEQGAQLHAE 348

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           VI     S  F+S+ ++DMY KC  I  +  +F  +     ++W + I   AQHG   E 
Sbjct: 349 VIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTDIAWNAAINVLAQHGHGREA 408

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           +  +D M S+G++PN +TFV L+ ACSH GLV +G K F SM + +GI P  +HY+C++D
Sbjct: 409 IRAFDRMTSSGIRPNHITFVSLLTACSHAGLVDEGLKYFYSMKDHHGIEPKGEHYSCIID 468

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           +  R+G LDEAE  I  MP +P+   W +LL AC+   N E+G   A++++ L+P++   
Sbjct: 469 MYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGACRMRGNKELGEIAADNMMKLEPDNTGV 528

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
           ++ LS +YAS   W+ V  VRKLM    +KK PG+S+++  K +H+F + + SHP +++I
Sbjct: 529 HVSLSGIYASLGQWEDVKAVRKLMRDNRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQEKI 588

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
           +E L EL   +K  GYVPDT  +  ++E   K+R L +HSER+AVA+ L+ S+P T   +
Sbjct: 589 YEKLEELYERIKEEGYVPDTRFLPCNLEDTAKQRILRYHSERIAVAFALI-SMPATKPII 647

Query: 564 VK-NLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           VK NLR+C DCH  +K IS++  R+I+VRD +R+HHF  G CSC D+W
Sbjct: 648 VKKNLRICADCHSALKFISKVENRDIIVRDNSRFHHFVKGGCSCGDYW 695



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 126/428 (29%), Positives = 200/428 (46%), Gaps = 36/428 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L+ C R       + LHA+++  G       L N LI  Y  C  V  A  L + MP+ +
Sbjct: 24  LQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPSAVRLFDAMPRPN 83

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW ++++   Q ++ +  ++ FS+M     L P  F  +S  +A  +L A   G Q+H
Sbjct: 84  LVSWTTLVSGLTQNSMHRDALAAFSSMCRAG-LVPTQFALSSAARAAAALAARHAGAQLH 142

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              V   F  +  V S+L DMY+K GL   A  VFD +  K++V+WTAM+  YA++G   
Sbjct: 143 CVGVRLGFDAELFVASNLADMYSKSGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNG--- 199

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
                                       N   A  +F +MRREG+   D  VL S++ A 
Sbjct: 200 ----------------------------NLEAAVIAFRDMRREGLVGADQHVLCSVLSAS 231

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI-IAAKDIFGRMRRKDVVSW 307
                  L + IH  V+  G+E  + + NA+ DMYAK +D+  AA+ +       +VVS 
Sbjct: 232 GGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVKIDQGSLNVVSA 291

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           TS+I G  +    E+ L ++ E+   GV+PNE TF  +I  C+   L+ +G +L   +I+
Sbjct: 292 TSLIDGYIETDCIEKALLMFIELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAEVIK 351

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
              I+ S    T LLD+  + G +  +  L K + +  D   W A ++    H +     
Sbjct: 352 TSLISDSFVSST-LLDMYGKCGLISLSIQLFKEIEYHTD-IAWNAAINVLAQHGHGREAI 409

Query: 428 RVANHLLS 435
           R  + + S
Sbjct: 410 RAFDRMTS 417



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/294 (26%), Positives = 135/294 (45%), Gaps = 35/294 (11%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLS-PFCDDDVVKSSLVDMYAKCG-LPNNARAVFDS 165
            A+ +++CG  G  RLG+ +HA  VLS        + + L+ MY+ C  +P+        
Sbjct: 20  LAAPLQSCGRAGDLRLGRCLHARLVLSGAAAASTFLANHLITMYSHCADVPS-------- 71

Query: 166 IKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSF 225
                                   A+ +F+  P  NL  WT LVSGL Q+    DA  +F
Sbjct: 72  ------------------------AVRLFDAMPRPNLVSWTTLVSGLTQNSMHRDALAAF 107

Query: 226 IEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK 285
             M R G+ +     LSS   A A  A    G Q+H + + LG+++ LF+++ + DMY+K
Sbjct: 108 SSMCRAGL-VPTQFALSSAARAAAALAARHAGAQLHCVGVRLGFDAELFVASNLADMYSK 166

Query: 286 CSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGL 345
              ++ A  +F +M +KD V+WT++I G A++G  E  +  + +M   G+   +   +  
Sbjct: 167 SGLLVEACRVFDQMPQKDAVAWTAMIDGYAKNGNLEAAVIAFRDMRREGLVGADQHVLCS 226

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           + + S     G   +   S +   G    +     L D+ +++  +D A  ++K
Sbjct: 227 VLSASGGLKDGWLARAIHSCVMKSGFEQEVAVRNALTDMYAKAADMDNAARVVK 280



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 15/187 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ CA   +      LHA++IK  L     + +TL+D YGKC L+  +  L +E+     
Sbjct: 330 IKGCAMQALLEQGAQLHAEVIKTSLISDSFVSSTLLDMYGKCGLISLSIQLFKEIEYHTD 389

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----- 124
           ++W + +    Q    ++ I  F  M +   ++P+H  F SL+ AC   G    G     
Sbjct: 390 IAWNAAINVLAQHGHGREAIRAFDRMTS-SGIRPNHITFVSLLTACSHAGLVDEGLKYFY 448

Query: 125 --KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAY 181
             K  H    + P  +     S ++DMY + G  + A      + +K N+  W ++L A 
Sbjct: 449 SMKDHHG---IEPKGEH---YSCIIDMYGRAGRLDEAEKFIGEMPVKPNAYGWCSLLGAC 502

Query: 182 ARSGRKK 188
              G K+
Sbjct: 503 RMRGNKE 509


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/621 (34%), Positives = 331/621 (53%), Gaps = 51/621 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIK-LGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ-- 66
           L  C+R ++    + +HA ++K   L     + + L+D Y   + V  A  + + +P+  
Sbjct: 289 LPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPS 348

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           R    W +++  Y QA + ++ + +FS M A     P     + ++ AC         + 
Sbjct: 349 RQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGKEA 408

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +H   V      +  V+++L+DMYA                               R G 
Sbjct: 409 MHGYVVKRGMAGNRFVQNALMDMYA-------------------------------RLGE 437

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR------------REGVD 234
              A  IF     R++  W  L++G V   +  +AF    EM+             EG  
Sbjct: 438 MDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEA 497

Query: 235 ---IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
              + + + L +++  CA  A    GK+IHG  +    ES + + +A+VDMYAKC  + A
Sbjct: 498 HRCMPNNITLMTLLPGCAALAAPARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAA 557

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACS 350
           ++ +F R+ R++V++W  +I+    HG  +E +AL+DEM + G   PNEVTF+  + ACS
Sbjct: 558 SRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAACS 617

Query: 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-PFEPDEPT 409
           H GLV +G +LF  M  D+G+ P+   + C++D+L R+G LDEA ++I +M P E     
Sbjct: 618 HSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSMEPGEQQVSA 677

Query: 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469
           W++LL AC+ HRN E+G   A  L  L+P + S Y+LL N+Y++A MW     VR  M  
Sbjct: 678 WSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMWDKSVAVRVRMRR 737

Query: 470 MEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHD 529
             V KEPG S+IE     H F AGE+SHP   E+   +  L   M+R GY PDTS VLHD
Sbjct: 738 QGVAKEPGCSWIELDGAIHRFMAGESSHPASAEVHAHMDALWERMRREGYAPDTSCVLHD 797

Query: 530 MEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIV 589
           +++ EK   L +HSE+LA+A+GLL++ PG  +RV KNLRVC DCH   K +S++  R+IV
Sbjct: 798 VDEDEKAAMLRYHSEKLAIAFGLLRAPPGAAIRVAKNLRVCNDCHEAAKFMSKMVGRDIV 857

Query: 590 VRDATRYHHFKDGKCSCNDFW 610
           +RD  R+HHF+DG CSC D+W
Sbjct: 858 LRDVRRFHHFRDGSCSCGDYW 878



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 175/425 (41%), Gaps = 60/425 (14%)

Query: 23  KTLHAQIIKLGLHQYG----PLPNTLIDAYGKCDLVQYAHHLLEEMPQR------DHVSW 72
           +  HA  +K G    G    P  N L+  Y +  LV  A  L             D V+W
Sbjct: 192 REAHAFALKRGFLDEGRERFPF-NALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTW 250

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            ++++   Q     + + +   M++L  ++PD   FAS + AC  L    LG+++HA  +
Sbjct: 251 NTMISLLVQGGRCAEAVEVLYDMVSL-GVRPDGVTFASALPACSRLEMLALGREMHAVVL 309

Query: 133 L-SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
             +    +  V S+LVDMYA      +AR VFD +                         
Sbjct: 310 KDADLAANSFVASALVDMYAGNEKVASARRVFDMVP------------------------ 345

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
                 P R L +W A++ G  Q+  + +A   F  M  E         +S ++ ACA  
Sbjct: 346 -----EPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARS 400

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
                 + +HG V+  G     F+ NA++DMYA+  ++  A+ IF  +  +DVVSW ++I
Sbjct: 401 EGFAGKEAMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLI 460

Query: 312 VGTAQHGQAEETLALYDEM------------VSAG----VKPNEVTFVGLIYACSHVGLV 355
            G    G A E   L  EM               G      PN +T + L+  C+ +   
Sbjct: 461 TGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAP 520

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
            +G+++    +  + +   +   + L+D+ ++ G L  +  +   +P   +  TW  L+ 
Sbjct: 521 ARGKEIHGYAVR-HALESDIAVGSALVDMYAKCGCLAASRAVFDRLP-RRNVITWNVLIM 578

Query: 416 ACKHH 420
           A   H
Sbjct: 579 AYGMH 583



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 190/417 (45%), Gaps = 60/417 (14%)

Query: 24  TLHAQIIKLGL-HQYGP-LPNTLIDAYGKCDLVQYAHHLLEEMPQ--RDHVSWASILTAY 79
           +LHA  ++  L H+  P + N L+ AY +C  +  A  L        RD VS+ S+++A 
Sbjct: 84  SLHAAALRRALLHRPSPAVGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISAL 143

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSL---GATRLGKQVHACFVLSPF 136
                 ++ +     MLA  +     F   S++ AC  L      RLG++ HA  +   F
Sbjct: 144 CLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGF 203

Query: 137 CDDDVVK---SSLVDMYAKCGLPNNARAVFDSIKLKNS------VSWTAMLSAYARSGRK 187
            D+   +   ++L+ MYA+ GL ++A+++F +     S      V+W  M+S   + GR 
Sbjct: 204 LDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRC 263

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
            +A+E+                             Y  + +   GV   D +  +S + A
Sbjct: 264 AEAVEV----------------------------LYDMVSL---GVR-PDGVTFASALPA 291

Query: 248 CANFAVLELGKQIHGLVIA---LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--K 302
           C+   +L LG+++H +V+    L   S  F+++A+VDMYA    + +A+ +F  +    +
Sbjct: 292 CSRLEMLALGREMHAVVLKDADLAANS--FVASALVDMYAGNEKVASARRVFDMVPEPSR 349

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHV-GLVGKGRK 360
            +  W ++I G AQ G  EE L L+  M   AG  P+E T  G++ AC+   G  GK  +
Sbjct: 350 QLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACARSEGFAGK--E 407

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417
                +   G+  +      L+D+ +R G +D A  +  AM    D  +W  L++ C
Sbjct: 408 AMHGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIF-AMIDPRDVVSWNTLITGC 463



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 144/331 (43%), Gaps = 50/331 (15%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC--DDDVVKSSLVDMYAKCG--LPN 157
           Q DHF     +K+  +L   R  + +HA  +           V ++L+  YA+CG     
Sbjct: 60  QLDHFALPPAIKSAAALRDARAARSLHAAALRRALLHRPSPAVGNALLTAYARCGDLDAA 119

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
            A     + +L+++VS+ +++SA            +F Q        W            
Sbjct: 120 LALFAATATELRDAVSYNSLISALC----------LFRQ--------W----------ER 151

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE---LGKQIHGLVIALGY---ES 271
            +DA     +M  EG   V    L S++ AC++    +   LG++ H   +  G+     
Sbjct: 152 ALDALR---DMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGR 208

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRK------DVVSWTSIIVGTAQHGQAEETLA 325
             F  NA++ MYA+   +  A+ +F            DVV+W ++I    Q G+  E + 
Sbjct: 209 ERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVE 268

Query: 326 LYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385
           +  +MVS GV+P+ VTF   + ACS + ++  GR++   +++D  +  +    + L+D+ 
Sbjct: 269 VLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLKDADLAANSFVASALVDMY 328

Query: 386 SRSGHLDEAENLIKAMPFEPDEP--TWAALL 414
           + +  +  A  +   +P EP      W A++
Sbjct: 329 AGNEKVASARRVFDMVP-EPSRQLGMWNAMI 358



 Score = 40.4 bits (93), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 110/290 (37%), Gaps = 62/290 (21%)

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSIIVGTAQHGQAEETL-ALYDEMV 331
           + NA++  YA+C D+ AA  +F       +D VS+ S+I       Q E  L AL D + 
Sbjct: 102 VGNALLTAYARCGDLDAALALFAATATELRDAVSYNSLISALCLFRQWERALDALRDMLA 161

Query: 332 SAGVKPNEVTFVGLIYACSHV-------------------GLVGKGRKLFK-----SMIE 367
                 +  T V ++ ACSH+                   G + +GR+ F      SM  
Sbjct: 162 EGRHDVSSFTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYA 221

Query: 368 DYGITPSLQH------------------YTCLLDLLSRSGHLDEAENLIKAM---PFEPD 406
             G+    Q                   +  ++ LL + G   EA  ++  M      PD
Sbjct: 222 RLGLVDDAQSLFRTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPD 281

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA---MWQHVSKV 463
             T+A+ L AC       +G  +  H + LK  D     L +N + ++A   M+    KV
Sbjct: 282 GVTFASALPACSRLEMLALGREM--HAVVLKDAD-----LAANSFVASALVDMYAGNEKV 334

Query: 464 RKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAE 513
                V ++  EP      +    +    G     + +E  EL + ++AE
Sbjct: 335 ASARRVFDMVPEPSRQLGMW----NAMICGYAQAGMDEEALELFSRMEAE 380


>gi|224065723|ref|XP_002301939.1| predicted protein [Populus trichocarpa]
 gi|222843665|gb|EEE81212.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/588 (35%), Positives = 325/588 (55%), Gaps = 32/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH ++IK   + +G + + L+ +Y +    + A  L +E+P +D VSW S+++ +++ 
Sbjct: 58  RALHCRVIKSVNYNHGFIGDQLVSSYVELGCTKDALELFDELPDKDLVSWNSLISGFSRR 117

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 + +   M     L+P+      +V AC  +G   +GK +H   V S    +  V
Sbjct: 118 ADLGICLGLLFRMRFEMGLKPNEVTVIPVVSACAGVGELDVGKCIHGIAVKSGMLLEVKV 177

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SL+++Y KCG    A                                 +FE   V++L
Sbjct: 178 VNSLINLYGKCGCLEAACC-------------------------------LFEGMSVQSL 206

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W ++V+  V           FI MRR G++  D   + S++ AC N  V +L + +HG
Sbjct: 207 VSWNSMVAVHVHMGLAEKGIGYFIMMRRAGIN-SDQATVVSLLLACENLGVRKLAEAVHG 265

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            ++  G +  L I+ A++D+YAK   +  +  +FG M   D V+WT+++   A HG+  E
Sbjct: 266 YILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDAVAWTAMLSSYAMHGRGRE 325

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            +  ++ MV  GV P+ VTF  L+ ACSH GLV +G+  FK M E YG+   ++HY+C++
Sbjct: 326 AIEHFELMVREGVVPDHVTFTHLLSACSHSGLVEEGKNYFKIMYEFYGVELRVEHYSCMV 385

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL RSGHL++A  LIK+MP EP+   W AL+ AC+   N E+G  VA  L SL P D  
Sbjct: 386 DLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRGNIELGKEVAERLFSLDPSDSR 445

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +YI LSN+Y++A  W+  SKVR LM    + + PG SYIE G   H F  G+ SHP  ++
Sbjct: 446 NYITLSNMYSAAGQWRDASKVRALMKERVLIRNPGCSYIEHGNKIHCFVMGDQSHPDTEQ 505

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L EL  + +  G+   T  VLHD++++ KE  +  HSE+LA+A+GLL +  G  L 
Sbjct: 506 IYNKLEELVRKNREVGFASKTEYVLHDVDEEVKEDLINKHSEKLAIAFGLLVTNAGMPLI 565

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + KN+R+CGDCH   K+IS I KR I++RD  R+HHF +G CSC D+W
Sbjct: 566 ITKNIRICGDCHGFAKLISLIEKRTIIIRDTKRFHHFTNGLCSCGDYW 613



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 45/191 (23%), Positives = 82/191 (42%), Gaps = 7/191 (3%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C    +    + +H  I+  GL     +   L+D Y K   +  +  +   M   D 
Sbjct: 248 LLACENLGVRKLAEAVHGYILNGGLDGNLAIATALLDLYAKLGTLSDSCKVFGGMINPDA 307

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W ++L++Y      ++ I  F  M+  + + PDH  F  L+ AC   G    GK    
Sbjct: 308 VAWTAMLSSYAMHGRGREAIEHFELMVR-EGVVPDHVTFTHLLSACSHSGLVEEGKNYFK 366

Query: 130 CFVLSPFCDDDVV---KSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSG 185
             ++  F   ++     S +VD+  + G  N+A  +  S+ ++ NS  W A++ A    G
Sbjct: 367 --IMYEFYGVELRVEHYSCMVDLLGRSGHLNDAYKLIKSMPMEPNSGVWGALIGACRVRG 424

Query: 186 RKKDAMEIFEQ 196
             +   E+ E+
Sbjct: 425 NIELGKEVAER 435


>gi|302758830|ref|XP_002962838.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
 gi|300169699|gb|EFJ36301.1| hypothetical protein SELMODRAFT_79052 [Selaginella moellendorffii]
          Length = 652

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 211/590 (35%), Positives = 323/590 (54%), Gaps = 35/590 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +++   I+  G+ +   +   L+  YGK      A  +   M  RD V+W++++ AY + 
Sbjct: 96  RSIQLAILGTGIEEESIVQTALVSLYGKLGHCTDAASVFLRMSHRDVVAWSAMVAAYARN 155

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P++ + +F  M  LD + P+     S + AC SLG  R G  +H            VV
Sbjct: 156 GHPREALGLFRQM-DLDGVAPNKVTLVSGLDACASLGDLRSGALMHQRVEAQGIQSGVVV 214

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LV++Y KC                               GR + A E F Q   +N+
Sbjct: 215 GTALVNLYGKC-------------------------------GRIEAAAEAFGQIVEKNV 243

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W+A+ +   ++    DA      M  EG+   +     S++ ACA  A L+ G++IH 
Sbjct: 244 VAWSAISAAYARNDRNRDAIRVLHRMDLEGL-APNSTTFVSVLDACAAIAALKQGRRIHE 302

Query: 263 L--VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
              V+  G ES +++  A+V+MY+KC ++  A ++F ++   D+V W S+I   AQHGQ 
Sbjct: 303 RIHVLGGGLESDVYVLTALVNMYSKCGNLALAGNMFDKIAHLDLVLWNSLIATNAQHGQT 362

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           E+ L L++ M   G++P  +TF  +++ACSH G++ +GRK F S I D+GI P  +H+ C
Sbjct: 363 EKALELFERMRLEGLQPTIITFTSVLFACSHAGMLDQGRKHFVSFIGDHGIFPEAEHFGC 422

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DLL R+G + ++E+L+  MPFEP    W A L AC+ +RN +     A +L  L P  
Sbjct: 423 MVDLLGRAGWIVDSEDLLLHMPFEPHPVAWMAFLGACRTYRNMDGAIWAAENLFQLDPRK 482

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
            + Y+LLSN+YA A  W  V+++R+ M +    KE G S+IE     H F +G+  HP  
Sbjct: 483 RAPYVLLSNMYAKAGRWSDVARMRQAMQLFMTVKEAGRSWIEVKDRVHEFISGDLDHPRI 542

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
            EI   L  L   MK  GYVPDT  VLHD++Q+ KE  + +HSE+LA+A+ LL +  G+ 
Sbjct: 543 GEIHAELQRLTKLMKAAGYVPDTEMVLHDVKQEVKETMVGYHSEKLAMAFALLTTPEGSP 602

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +RVVKNLRVC DCH   K IS++  REIVVRD  R+H F++G CSC D+W
Sbjct: 603 IRVVKNLRVCNDCHTASKFISKLVNREIVVRDCNRFHRFQNGACSCGDYW 652



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/289 (25%), Positives = 139/289 (48%), Gaps = 4/289 (1%)

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
           ++N      ++  Y +  R  DA+ +F     +N+F WT +++   ++R+    +  F  
Sbjct: 7   IRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLFFRG 66

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M  +G++    + +S  + AC +   + +G+ I   ++  G E    +  A+V +Y K  
Sbjct: 67  MLLQGIN-PGEVGISIFLSACTDAREITIGRSIQLAILGTGIEEESIVQTALVSLYGKLG 125

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
               A  +F RM  +DVV+W++++   A++G   E L L+ +M   GV PN+VT V  + 
Sbjct: 126 HCTDAASVFLRMSHRDVVAWSAMVAAYARNGHPREALGLFRQMDLDGVAPNKVTLVSGLD 185

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           AC+ +G +  G  L    +E  GI   +   T L++L  + G ++ A      +  E + 
Sbjct: 186 ACASLGDLRSG-ALMHQRVEAQGIQSGVVVGTALVNLYGKCGRIEAAAEAFGQI-VEKNV 243

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
             W+A+ +A   +       RV  H + L+   P+S   +S + A AA+
Sbjct: 244 VAWSAISAAYARNDRNRDAIRVL-HRMDLEGLAPNSTTFVSVLDACAAI 291



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 2/150 (1%)

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
           LG+    F+ N ++D+Y KC     A  +F  ++ K+V SWT ++   A++   +     
Sbjct: 4   LGWIRNRFLCNLLIDLYTKCDRFDDALAVFHGIQSKNVFSWTMMLAAFAENRDFDRCWLF 63

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
           +  M+  G+ P EV     + AC+    +  GR + +  I   GI       T L+ L  
Sbjct: 64  FRGMLLQGINPGEVGISIFLSACTDAREITIGRSI-QLAILGTGIEEESIVQTALVSLYG 122

Query: 387 RSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           + GH  +A ++   M    D   W+A+++A
Sbjct: 123 KLGHCTDAASVFLRMSHR-DVVAWSAMVAA 151


>gi|449460189|ref|XP_004147828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/570 (36%), Positives = 341/570 (59%), Gaps = 9/570 (1%)

Query: 43  TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQ 102
           +++  Y K   ++ A    +EMP+R  VSW ++ +AY Q   P++ +++F  ML  + + 
Sbjct: 197 SMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLE-EGIT 255

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162
           PD   +   + +C S+G   L   +           +  VK++L+DM+AK G    AR +
Sbjct: 256 PDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNI 315

Query: 163 FDSI-KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           FD +   +N+V+W  M+SAY R G+   A E+F+  P R++  W ++++G  Q+     +
Sbjct: 316 FDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMS 375

Query: 222 FYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
              F EM    +DI  D + ++S++ AC +   L+L   +  +V     +  +   N+++
Sbjct: 376 IELFKEMI-SCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLI 434

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
            MY+KC  +  A  IF  M  +DVVS+ ++I G A +G  +E + L   M   G++P+ V
Sbjct: 435 FMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHV 494

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           T++G++ ACSH GL+ +G+ +FKS+       P++ HY C++DLL R+G LDEA+ LI++
Sbjct: 495 TYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGELDEAKMLIQS 549

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           MP +P    + +LL+A + H+   +G   A+ L  L+P++  +Y+LLSN+YAS   W+ V
Sbjct: 550 MPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDV 609

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
            +VR++M    +KK  G S++E+    H F  G+ SH    +I++LL EL+ +MKR G+V
Sbjct: 610 KRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFV 669

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
            D S  L D+E++EKE  L  HSE+LA+ + LL S  GT +RVVKNLR+C DCH  +KMI
Sbjct: 670 ADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCHTAIKMI 729

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           S++  REIVVRD  R+H F +G CSC+D+W
Sbjct: 730 SKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 116/463 (25%), Positives = 198/463 (42%), Gaps = 108/463 (23%)

Query: 56  YAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115
           Y   +    P  D   ++ +L  Y++     + +S+F    +L+ L+P  FV+  L+K  
Sbjct: 52  YVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLN-LRPQPFVYIYLIKLA 110

Query: 116 GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWT 175
           G     + G   HA  +     DD  ++++++DMYAK G  + AR +F+ +  +    W 
Sbjct: 111 G-----KSGNLFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWN 165

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGL--------------------VQS 215
           +M+S   +SG + +A+ +F   P RN+  WT++V+G                     V S
Sbjct: 166 SMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVS 225

Query: 216 RNEIDAFYS-----------FIEMRREGV---------------DIVDP----------- 238
            N + + Y+           F +M  EG+                I DP           
Sbjct: 226 WNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMID 285

Query: 239 ---LVLSSIVGAC-----ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290
              +VL+S V        A F  LE+ + I      LG +      N ++  Y +   + 
Sbjct: 286 QKHIVLNSFVKTALLDMHAKFGNLEIARNIFD---ELGSQRNAVTWNIMISAYTRVGKLS 342

Query: 291 AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA-GVKPNEVTFVGLIYAC 349
            A+++F  M ++DVVSW S+I G AQ+G++  ++ L+ EM+S   ++P+EVT   ++ AC
Sbjct: 343 LARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSAC 402

Query: 350 SHVGLVG-----------KGRKL----FKSMIEDYGITPSLQ---------------HYT 379
            H+G +            K  KL    F S+I  Y    S+                 + 
Sbjct: 403 GHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFN 462

Query: 380 CLLDLLSRSGHLDEAENLIKAMP---FEPDEPTWAALLSACKH 419
            L+   + +GH  EA  L+  M     EPD  T+  +L+AC H
Sbjct: 463 TLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSH 505



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 14/170 (8%)

Query: 31  KLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTIS 90
           +LG  +     N +I AY +   +  A  L + MP+RD VSW S++  Y Q      +I 
Sbjct: 318 ELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIE 377

Query: 91  IFSTMLALDKLQPDHFVFASLVKACGSLGATRLG-------KQVHACFVLSPFCDDDVVK 143
           +F  M++   +QPD    AS++ ACG +GA +L        ++ +    +S F       
Sbjct: 378 LFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGF------- 430

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
           +SL+ MY+KCG   +A  +F ++  ++ VS+  ++S +A +G  K+A+++
Sbjct: 431 NSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKL 480


>gi|449476974|ref|XP_004154891.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Cucumis sativus]
          Length = 759

 Score =  399 bits (1026), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/570 (36%), Positives = 341/570 (59%), Gaps = 9/570 (1%)

Query: 43  TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQ 102
           +++  Y K   ++ A    +EMP+R  VSW ++ +AY Q   P++ +++F  ML  + + 
Sbjct: 197 SMVTGYAKMGDLESARRYFDEMPERSVVSWNAMQSAYAQKECPKEALNLFHQMLE-EGIT 255

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162
           PD   +   + +C S+G   L   +           +  VK++L+DM+AK G    AR +
Sbjct: 256 PDDTTWVVTISSCSSIGDPTLADSILRMIDQKHIVLNSFVKTALLDMHAKFGNLEIARNI 315

Query: 163 FDSI-KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           FD +   +N+V+W  M+SAY R G+   A E+F+  P R++  W ++++G  Q+     +
Sbjct: 316 FDELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMS 375

Query: 222 FYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
              F EM    +DI  D + ++S++ AC +   L+L   +  +V     +  +   N+++
Sbjct: 376 IELFKEMI-SCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGFNSLI 434

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
            MY+KC  +  A  IF  M  +DVVS+ ++I G A +G  +E + L   M   G++P+ V
Sbjct: 435 FMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKLVLTMEEEGIEPDHV 494

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           T++G++ ACSH GL+ +G+ +FKS+       P++ HY C++DLL R+G LDEA+ LI++
Sbjct: 495 TYIGVLTACSHAGLLNEGKNVFKSIQ-----APTVDHYACMVDLLGRAGELDEAKMLIQS 549

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           MP +P    + +LL+A + H+   +G   A+ L  L+P++  +Y+LLSN+YAS   W+ V
Sbjct: 550 MPMKPHAGVYGSLLNASRIHKRVGLGELAASKLFELEPQNLGNYVLLSNIYASFGRWEDV 609

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
            +VR++M    +KK  G S++E+    H F  G+ SH    +I++LL EL+ +MKR G+V
Sbjct: 610 KRVREMMKKGGLKKSVGMSWVEYKGQVHKFTVGDRSHEQSKDIYKLLAELERKMKRVGFV 669

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
            D S  L D+E++EKE  L  HSE+LA+ + LL S  GT +RVVKNLR+C DCH  +KMI
Sbjct: 670 ADKSCALRDVEEEEKEEMLGTHSEKLAICFALLISEVGTTIRVVKNLRICLDCHTAIKMI 729

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           S++  REIVVRD  R+H F +G CSC+D+W
Sbjct: 730 SKLEGREIVVRDNNRFHCFSEGMCSCHDYW 759



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 116/463 (25%), Positives = 198/463 (42%), Gaps = 108/463 (23%)

Query: 56  YAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115
           Y   +    P  D   ++ +L  Y++     + +S+F    +L+ L+P  FV+  L+K  
Sbjct: 52  YVDSIFTSSPSPDASVYSCMLKYYSRMGAHNQVVSLFKCTHSLN-LRPQPFVYIYLIKLA 110

Query: 116 GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWT 175
           G     + G   HA  +     DD  ++++++DMYAK G  + AR +F+ +  +    W 
Sbjct: 111 G-----KSGNMFHAYVLKLGHIDDHFIRNAILDMYAKNGQVDLARNLFEQMAERTLADWN 165

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGL--------------------VQS 215
           +M+S   +SG + +A+ +F   P RN+  WT++V+G                     V S
Sbjct: 166 SMISGCWKSGNETEAVVLFNMMPARNIITWTSMVTGYAKMGDLESARRYFDEMPERSVVS 225

Query: 216 RNEIDAFYS-----------FIEMRREGV---------------DIVDP----------- 238
            N + + Y+           F +M  EG+                I DP           
Sbjct: 226 WNAMQSAYAQKECPKEALNLFHQMLEEGITPDDTTWVVTISSCSSIGDPTLADSILRMID 285

Query: 239 ---LVLSSIVGAC-----ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290
              +VL+S V        A F  LE+ + I      LG +      N ++  Y +   + 
Sbjct: 286 QKHIVLNSFVKTALLDMHAKFGNLEIARNIFD---ELGSQRNAVTWNIMISAYTRVGKLS 342

Query: 291 AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA-GVKPNEVTFVGLIYAC 349
            A+++F  M ++DVVSW S+I G AQ+G++  ++ L+ EM+S   ++P+EVT   ++ AC
Sbjct: 343 LARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIELFKEMISCMDIQPDEVTIASVLSAC 402

Query: 350 SHVGLVG-----------KGRKL----FKSMIEDYGITPSLQ---------------HYT 379
            H+G +            K  KL    F S+I  Y    S+                 + 
Sbjct: 403 GHIGALKLSYWVLDIVREKNIKLGISGFNSLIFMYSKCGSVADAHRIFQTMGTRDVVSFN 462

Query: 380 CLLDLLSRSGHLDEAENLIKAMP---FEPDEPTWAALLSACKH 419
            L+   + +GH  EA  L+  M     EPD  T+  +L+AC H
Sbjct: 463 TLISGFAANGHGKEAIKLVLTMEEEGIEPDHVTYIGVLTACSH 505



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 14/170 (8%)

Query: 31  KLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTIS 90
           +LG  +     N +I AY +   +  A  L + MP+RD VSW S++  Y Q      +I 
Sbjct: 318 ELGSQRNAVTWNIMISAYTRVGKLSLARELFDNMPKRDVVSWNSMIAGYAQNGESAMSIE 377

Query: 91  IFSTMLALDKLQPDHFVFASLVKACGSLGATRLG-------KQVHACFVLSPFCDDDVVK 143
           +F  M++   +QPD    AS++ ACG +GA +L        ++ +    +S F       
Sbjct: 378 LFKEMISCMDIQPDEVTIASVLSACGHIGALKLSYWVLDIVREKNIKLGISGF------- 430

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
           +SL+ MY+KCG   +A  +F ++  ++ VS+  ++S +A +G  K+A+++
Sbjct: 431 NSLIFMYSKCGSVADAHRIFQTMGTRDVVSFNTLISGFAANGHGKEAIKL 480


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 203/536 (37%), Positives = 317/536 (59%), Gaps = 34/536 (6%)

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
            Y + NL   ++ +F  M+A D         AS+V    +L A          F  S   
Sbjct: 170 GYVRNNLVYHSLELFRAMIASDS--------ASVVDEAAALVA----------FSASARV 211

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK--KDAMEIFE 195
            D  V +SL  + AK G   NA  V              ML +YA+ G +  + A ++F+
Sbjct: 212 PDRGVTASLHALIAKIGFERNAGVV------------NTMLDSYAKGGSRDLEVARKVFD 259

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLSSIVGACANFAVL 254
               R++  W ++++   Q+    +A   + +M   G  I  + + LS+++ ACA+   +
Sbjct: 260 TME-RDVVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAI 318

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
           + GK+IH  V+ +G E  +++  +IVDMY+KC  +  A   F +++ K+++SW+++I G 
Sbjct: 319 QTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGY 378

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
             HG+ +E L ++ EM  +G++PN +TF+ ++ ACSH GL+ +GR  + +M +++GI   
Sbjct: 379 GMHGRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAG 438

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           ++HY C++DLL R+G LDEA +LIK M  +PD   W ALLSAC+ H+N E+       L 
Sbjct: 439 VEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLF 498

Query: 435 SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGE 494
            L   +   Y+LLSN+YA A MW+ V ++R L+    ++K PGYS  E     ++FY G+
Sbjct: 499 ELDASNSGYYVLLSNIYAEARMWKDVERIRLLVKTRRIEKPPGYSSFELKGKIYLFYVGD 558

Query: 495 TSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLK 554
            SHP   EI+  L +L   M+  GYVP+T SVLHD++++EKE  L  HSE+LAVA+ L+ 
Sbjct: 559 KSHPQHIEIYSYLEKLLERMQEAGYVPNTGSVLHDLDEEEKESALRIHSEKLAVAFALMN 618

Query: 555 SVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           SVP +V+ ++KNLRVC DCH  MK I++IT+REI++RD  R+HHFKDG CSC D+W
Sbjct: 619 SVPRSVIHIIKNLRVCSDCHTAMKFITKITEREIIIRDLQRFHHFKDGLCSCRDYW 674



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/303 (26%), Positives = 144/303 (47%), Gaps = 38/303 (12%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDL--VQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           +LHA I K+G  +   + NT++D+Y K     ++ A  + + M +RD VSW S++  Y Q
Sbjct: 219 SLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQ 277

Query: 82  ANLPQKTISIFSTMLAL-DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
             +  + I ++S ML +   ++ +    ++++ AC   GA + GK++H   V     ++ 
Sbjct: 278 NGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKRIHNQVVRMGLEENV 337

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V +S+VDMY+KCG    A   F  IK KN +SW+AM++ Y   GR ++A+EI       
Sbjct: 338 YVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEI------- 390

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ- 259
                                   F EM+R G+   + +   S++ AC++  +L+ G+  
Sbjct: 391 ------------------------FTEMKRSGLR-PNYITFISVLAACSHAGLLDEGRYW 425

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK-DVVSWTSIIVGTAQHG 318
            + +    G E+ +     +VD+  +   +  A  +   M+ K D   W +++     H 
Sbjct: 426 YNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHK 485

Query: 319 QAE 321
             E
Sbjct: 486 NVE 488



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 99/204 (48%), Gaps = 8/204 (3%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA      T K +H Q++++GL +   +  +++D Y KC  V+ A     ++ +++ 
Sbjct: 309 LLACAHAGAIQTGKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNI 368

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW++++T Y      Q+ + IF+ M     L+P++  F S++ AC   G    G+  + 
Sbjct: 369 LSWSAMITGYGMHGRGQEALEIFTEM-KRSGLRPNYITFISVLAACSHAGLLDEGRYWYN 427

Query: 130 CFVLSPFCDDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRK 187
                   +  V     +VD+  + G  + A ++   +K+K ++  W A+LSA     R 
Sbjct: 428 AMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSAC----RI 483

Query: 188 KDAMEIFEQAPVRNLFLWTALVSG 211
              +E+ E + V+ LF   A  SG
Sbjct: 484 HKNVELAEMS-VKRLFELDASNSG 506


>gi|125557337|gb|EAZ02873.1| hypothetical protein OsI_25005 [Oryza sativa Indica Group]
          Length = 651

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/511 (39%), Positives = 299/511 (58%), Gaps = 7/511 (1%)

Query: 106 FVFASLVKACGSLGATR-----LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           F+ AS+     + G +      LG  VHA  V +    D  V+++LV  Y   G     R
Sbjct: 142 FLLASISNHLNAAGPSASACSFLGSHVHALAVKAGAAGDLFVRNALVHFYGVSGDVGAMR 201

Query: 161 AVFDSI-KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
            VFD + ++++ ++W  +L+ Y R+G    A E+F++ PVR+   W+ LV G V+     
Sbjct: 202 RVFDELPRVRDVLTWNEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELE 261

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
            A   F  M  +GV      V++++  A A   +LE GK +H +V   G   C+ +  A+
Sbjct: 262 VALGVFRNMVEQGVRPNQAAVVTAL-SAAARLGLLEHGKFVHNVVQRSGMPVCMNVGAAL 320

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           VDMYAKC  +  A+++F  MRR+DV +W ++I G A HG   + + L++  +S G+ P  
Sbjct: 321 VDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFERFISEGLSPTN 380

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           VTFVG++  CS  GLV +GR+ FK ++E Y I P ++HY C++DLL R+G + EA  LI+
Sbjct: 381 VTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEMEHYGCMVDLLGRAGLVPEAIELIE 440

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
            M   PD   W  +LS+CK H   ++G  V N L+ L P     Y+LLS +YA A  W  
Sbjct: 441 GMHIAPDPVLWGTILSSCKTHGLVDLGVSVGNKLIELDPTHSGYYVLLSGIYAKANKWDE 500

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
           V +VRKLMS     K  G+S +E     H F  G+T H    +I++ L  ++  +   GY
Sbjct: 501 VREVRKLMSSRGTNKSAGWSLMEAHGKVHKFLVGDTYHKDSVQIYDTLDMINKRLTEAGY 560

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
           VPD SSVLHD+ ++EK   +  HSERLA+AYG +    G+ +R+VKNLRVCGDCH   KM
Sbjct: 561 VPDVSSVLHDIGEEEKVHAVKVHSERLAIAYGFIVLEAGSPIRIVKNLRVCGDCHEFSKM 620

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++ + +REI+VRD +R+HH K+GKCSC D+W
Sbjct: 621 VTMVFQREIIVRDGSRFHHMKEGKCSCLDYW 651



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 84/157 (53%), Gaps = 5/157 (3%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N ++  Y +  ++  A  + +EMP RD +SW++++  Y +    +  + +F  M+    +
Sbjct: 217 NEVLAGYVRAGMMTVAREVFDEMPVRDEISWSTLVGGYVKEEELEVALGVFRNMVE-QGV 275

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLS--PFCDDDVVKSSLVDMYAKCGLPNNA 159
           +P+     + + A   LG    GK VH     S  P C +  V ++LVDMYAKCG    A
Sbjct: 276 RPNQAAVVTALSAAARLGLLEHGKFVHNVVQRSGMPVCMN--VGAALVDMYAKCGCVAVA 333

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           R VFD ++ ++  +W AM+   A  G  +DA+E+FE+
Sbjct: 334 REVFDGMRRRDVFAWNAMICGLAAHGLGRDAVELFER 370



 Score = 46.6 bits (109), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/160 (20%), Positives = 69/160 (43%), Gaps = 3/160 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  + + G+     +   L+D Y KC  V  A  + + M +RD  +W +++      
Sbjct: 299 KFVHNVVQRSGMPVCMNVGAALVDMYAKCGCVAVAREVFDGMRRRDVFAWNAMICGLAAH 358

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            L +  + +F   ++ + L P +  F  ++  C   G    G++     V     + ++ 
Sbjct: 359 GLGRDAVELFERFIS-EGLSPTNVTFVGVLNGCSRSGLVAEGRRYFKLIVEKYRIEPEME 417

Query: 143 K-SSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSA 180
               +VD+  + GL   A  + + + +  + V W  +LS+
Sbjct: 418 HYGCMVDLLGRAGLVPEAIELIEGMHIAPDPVLWGTILSS 457


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/607 (37%), Positives = 345/607 (56%), Gaps = 40/607 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIK---LGLHQYGPLPNT-LIDAYGKCDLVQYAHHLLEEMP 65
           L + A+H      + +HA  ++   L  H+ G L  T L+D Y KC  + YA  + E M 
Sbjct: 236 LPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMA 295

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLA--LDKLQPDHFVFASLVKACGSLGATRL 123
            R+ V+W++++  +       +  S+F  MLA  L  L P     AS ++AC +L    L
Sbjct: 296 VRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSV--ASALRACANLSDLCL 353

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           GKQ+HA                   + AK GL  +  A              ++LS YA+
Sbjct: 354 GKQLHA-------------------LLAKSGLHTDLTA------------GNSLLSMYAK 382

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           +G    A  +F+Q  V++   ++ALVSG VQ+    +AF  F +M+   V   D   + S
Sbjct: 383 AGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACNVQ-PDVATMVS 441

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++ AC++ A L+ GK  HG VI  G  S   I NA++DMYAKC  I  ++ IF  M  +D
Sbjct: 442 LIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARD 501

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           +VSW ++I G   HG  +E  AL+ +M     +P++VTF+ LI ACSH GLV +G++ F 
Sbjct: 502 IVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKRWFH 561

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
            M   YGITP ++HY  ++DLL+R G LDEA   I+ MP + D   W ALL AC+ H+N 
Sbjct: 562 MMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWGALLGACRVHKNI 621

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           ++G +V++ +  L PE   +++LLSN++++A  +   ++VR +      KK PG S+IE 
Sbjct: 622 DLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQGFKKSPGCSWIEI 681

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
               H F  G+ SH    EI++ L  +  ++ + GY  DTS VL D+E++EKE+ L +HS
Sbjct: 682 NGSLHAFIGGDRSHAQSSEIYQELDNILVDINKLGYRADTSFVLQDVEEEEKEKALLYHS 741

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           E+LA+A+G+L       + V KNLRVCGDCH V+K ++ + KR I+VRDA R+HHFK+G+
Sbjct: 742 EKLAIAFGVLTLSEDKTIFVTKNLRVCGDCHTVIKYMTLVRKRAIIVRDANRFHHFKNGQ 801

Query: 604 CSCNDFW 610
           CSC DFW
Sbjct: 802 CSCGDFW 808



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 124/457 (27%), Positives = 204/457 (44%), Gaps = 72/457 (15%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+      + + +H    + GLH    +   L+D Y KC   ++A  +   MP RD 
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W ++L  Y        TI+    +L  D   P+     +L+      GA   G+ VHA
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACL--LLMQDDHAPNASTLVALLPLLAQHGALSQGRAVHA 253

Query: 130 CFV----LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
             V    L    D  +V ++L+DMYAKCG    A  VF+++ ++N V+W+A++  +   G
Sbjct: 254 YSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCG 313

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
           R                                ++AF  F +M  +G+  + P  ++S +
Sbjct: 314 RM-------------------------------LEAFSLFKDMLAQGLCFLSPTSVASAL 342

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            ACAN + L LGKQ+H L+   G  + L   N+++ MYAK   I  A  +F +M  KD V
Sbjct: 343 RACANLSDLCLGKQLHALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTV 402

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           S+++++ G  Q+G+A+E   ++ +M +  V+P+  T V LI ACSH+  +  G+    S+
Sbjct: 403 SYSALVSGYVQNGKADEAFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSV 462

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP----------------------- 402
           I   GI         L+D+ ++ G +D +  +   MP                       
Sbjct: 463 IV-RGIASETSICNALIDMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEA 521

Query: 403 -----------FEPDEPTWAALLSACKHHRNTEMGTR 428
                       EPD+ T+  L+SAC H      G R
Sbjct: 522 TALFLDMKHQACEPDDVTFICLISACSHSGLVTEGKR 558



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/386 (22%), Positives = 175/386 (45%), Gaps = 45/386 (11%)

Query: 51  CDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFAS 110
           C  +  A HL +++P      + +++ AY+    P   + ++ ++      QP+++ F  
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRG-PALALRLYRSLRRRRLPQPNNYTFPF 134

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN 170
           ++KAC +L   R  + VH     +    D  V ++LVD+YAKC    +A  VF  +  ++
Sbjct: 135 VLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARD 194

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
            V+W AML+ YA  G+  D +                    L+Q  +  +A         
Sbjct: 195 VVAWNAMLAGYALHGKYSDTIACLL----------------LMQDDHAPNAS-------- 230

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL----GYESCLFISNAIVDMYAKC 286
                     L +++   A    L  G+ +H   +       ++  + +  A++DMYAKC
Sbjct: 231 ---------TLVALLPLLAQHGALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKC 281

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG---VKPNEVTFV 343
             ++ A  +F  M  ++ V+W++++ G    G+  E  +L+ +M++ G   + P  V   
Sbjct: 282 GHLVYASRVFEAMAVRNEVTWSALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPTSVA-- 339

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
             + AC+++  +  G++L  +++   G+   L     LL + +++G +D+A  L   M  
Sbjct: 340 SALRACANLSDLCLGKQL-HALLAKSGLHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVV 398

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRV 429
           + D  +++AL+S    +   +   RV
Sbjct: 399 K-DTVSYSALVSGYVQNGKADEAFRV 423


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/589 (35%), Positives = 332/589 (56%), Gaps = 35/589 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA  +K  L     + NTL+D Y KC  V+ +  + + M  +DHVSW +I+  Y Q+
Sbjct: 385 REVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQS 444

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           +   + I  F T    + ++ D  +  S+++AC  L +  L KQVH+ + +     D ++
Sbjct: 445 SRYSEAIGKFRTAQK-EGIKVDPMMMGSILEACSGLKSISLLKQVHS-YAIRNGLLDLIL 502

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           K+ ++D+Y +CG                 V +               A+ IFE    +++
Sbjct: 503 KNRIIDIYGECG----------------EVCY---------------ALNIFEMLDKKDI 531

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WT++V+   ++    +A   F +M   G+   D + L  I+GA A  + L  GK+IHG
Sbjct: 532 VTWTSMVNCFAENGLLHEAVALFGKMLNAGIQ-PDSVALVGILGAIAGLSSLTKGKEIHG 590

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +I   +     + +++VDMY+ C  +  A  +F   + KDVV WT++I  T  HG  ++
Sbjct: 591 FLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQ 650

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + ++  M+  GV P+ V+F+ L+YACSH  LV +G+     M+  Y + P  +HY C++
Sbjct: 651 AIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVV 710

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL RSG  +EA   IK+MP EP    W ALL AC+ H+N E+     + LL L+P++P 
Sbjct: 711 DLLGRSGQTEEAYKFIKSMPLEPKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPG 770

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y+L+SNV+A    W +V ++R  M+   ++K+P  S+IE G   H F A + SH     
Sbjct: 771 NYVLVSNVFAEMGKWNNVKEIRTKMTEQGLRKDPACSWIEIGNTVHTFTARDHSHRDSQA 830

Query: 503 IFELLTELDAEMKRRG-YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           I   L E+  +++R G YV DTS VLHD+ ++EK   L  HSERLA+++GL+ +  GT L
Sbjct: 831 IHLKLAEITEKLRREGQYVEDTSFVLHDVSEEEKIDLLHRHSERLAISFGLISTASGTPL 890

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+ KNLRVCGDCH   K++S++ +REIVVRDA R+HHF  G CSC DFW
Sbjct: 891 RIAKNLRVCGDCHEFTKLVSKLFEREIVVRDANRFHHFSGGTCSCGDFW 939



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 126/450 (28%), Positives = 218/450 (48%), Gaps = 68/450 (15%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+VCA        + LHA ++K G  ++    N L+  Y +C  V  A  +  E+  +D+
Sbjct: 272 LQVCAELAQLNHGRELHAALLKCGT-EFNIQCNALLVMYARCGWVDSALRVFREIGDKDY 330

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW S+L+ Y Q  L  + I  F  M+  +   PDH    SL+ A G LG    G++VHA
Sbjct: 331 ISWNSMLSCYVQNRLYAEAIDFFGEMVQ-NGFNPDHACIVSLLSAVGHLGRLINGREVHA 389

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V      D  + ++L+DMY KC     +  VFD +++K+ VSWT +++ YA+S R  +
Sbjct: 390 YAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSE 449

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+  F  A                               ++EG+  VDP+++ SI+ AC+
Sbjct: 450 AIGKFRTA-------------------------------QKEGIK-VDPMMMGSILEACS 477

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               + L KQ+H   I  G    L + N I+D+Y +C ++  A +IF  + +KD+V+WTS
Sbjct: 478 GLKSISLLKQVHSYAIRNGLLD-LILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTS 536

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL-------- 361
           ++   A++G   E +AL+ +M++AG++P+ V  VG++ A + +  + KG+++        
Sbjct: 537 MVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGK 596

Query: 362 -------FKSMIEDYGITPSLQH---------------YTCLLDLLSRSGHLDEAENLIK 399
                    S+++ Y    S+ +               +T +++     GH  +A  + K
Sbjct: 597 FPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFK 656

Query: 400 AM---PFEPDEPTWAALLSACKHHRNTEMG 426
            M      PD  ++ ALL AC H +  + G
Sbjct: 657 RMLETGVSPDHVSFLALLYACSHSKLVDEG 686



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 190/417 (45%), Gaps = 40/417 (9%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIK---LGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
           HY   L + A  +     + LHA  +    LG    G L   L+  YGKC  +  AH L 
Sbjct: 57  HYGWVLDLVAVRRAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLF 116

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQ---PDHFVFASLVKACGSL 118
           + MP R   SW +++ A   +    + + ++  M A + +    PD    AS++KACG+ 
Sbjct: 117 DGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAE 176

Query: 119 GATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAML 178
           G  R G +VH   V S      +V ++LV MYAKCGL ++A  VF+              
Sbjct: 177 GDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFE-------------- 222

Query: 179 SAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238
             + R G              R++  W + +SG VQ+   ++A   F  M+ +G  + + 
Sbjct: 223 --WMRDG--------------RDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSM-NS 265

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
                ++  CA  A L  G+++H  ++  G E  +   NA++ MYA+C  + +A  +F  
Sbjct: 266 YTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNI-QCNALLVMYARCGWVDSALRVFRE 324

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
           +  KD +SW S++    Q+    E +  + EMV  G  P+    V L+ A  H+G +  G
Sbjct: 325 IGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLING 384

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
           R++    ++   +   LQ    L+D+  +   ++ +  +   M  + D  +W  +++
Sbjct: 385 REVHAYAVKQR-LDSDLQIANTLMDMYIKCYSVECSARVFDRMRIK-DHVSWTTIIA 439



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 126/251 (50%), Gaps = 7/251 (2%)

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR-REGV 233
           T +L  Y + GR  DA  +F+  P R +F W AL+   + S    +A   +  MR  E V
Sbjct: 97  TKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPV 156

Query: 234 DIVDP--LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
               P    L+S++ AC        G ++HGL +  G +    ++NA+V MYAKC  + +
Sbjct: 157 AGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDS 216

Query: 292 AKDIFGRMRR-KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350
           A  +F  MR  +DV SW S I G  Q+G   E L L+  M S G   N  T VG++  C+
Sbjct: 217 ALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCA 276

Query: 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTW 410
            +  +  GR+L  ++++  G   ++Q    LL + +R G +D A  + + +  + D  +W
Sbjct: 277 ELAQLNHGRELHAALLK-CGTEFNIQ-CNALLVMYARCGWVDSALRVFREIG-DKDYISW 333

Query: 411 AALLSACKHHR 421
            ++LS    +R
Sbjct: 334 NSMLSCYVQNR 344



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 16/172 (9%)

Query: 257 GKQIHGLVIA---LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           G+Q+H   +A   LG +   F++  ++ MY KC  +  A  +F  M  + V SW ++I  
Sbjct: 74  GRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGA 133

Query: 314 TAQHGQAEETLALYDEMVS----AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
               G A E + +Y  M +    AG  P+  T   ++ AC   G  G GR    S +   
Sbjct: 134 CLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKAC---GAEGDGR--CGSEVHGL 188

Query: 370 GITPSLQHYT----CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417
            +   L   T     L+ + ++ G LD A  + + M    D  +W + +S C
Sbjct: 189 AVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGC 240


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/590 (35%), Positives = 328/590 (55%), Gaps = 37/590 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +  HA  IK  LH    + NTL+D Y KC  ++ +  + E M  RDH+SW +IL  + Q+
Sbjct: 387 REFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQS 446

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           +   + + +    L  + +  D  +  S+++ C  L +  L KQVH C+ +     D ++
Sbjct: 447 SRHSEALEMI-LELQKEGIMVDSMMIGSILETCCGLKSISLLKQVH-CYAIRNGLLDLIL 504

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           ++ L+D+Y +CG  +++  +F  ++ K+ VS                             
Sbjct: 505 ENRLIDIYGECGEFDHSLNLFQRVEKKDIVS----------------------------- 535

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WT++++    +     A + F EM++  +   D + L SI+ A A  + L  GKQ+HG
Sbjct: 536 --WTSMINCCTNNGRLNGAVFLFTEMQKANIQ-PDSVALVSILVAIAGLSSLTKGKQVHG 592

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            +I   +     + +++VDMY+ C  +  A  +F R + KDVV WT++I  T  HG  ++
Sbjct: 593 FLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQ 652

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L+  M+  G+ P+ V+F+ L+YACSH  LV +G+     M+  Y + P  +HY C++
Sbjct: 653 AIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVV 712

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+L RSG  +EA   IK MP +P    W ALL AC+ HRN  +    AN LL L+P++P 
Sbjct: 713 DILGRSGQTEEAYEFIKTMPMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPG 772

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +YIL+SNV+A    W +  + R  M+   ++K P  S+IE G   H F +G+  H   + 
Sbjct: 773 NYILVSNVFAEMGKWNNAKETRTRMAERGLRKNPACSWIEIGNNIHTFTSGDYCHRDSEA 832

Query: 503 IFELLTELDAEMKRR--GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
           I   L+E+  EM RR  GYV DT  VLHD  ++EK   L  HSER+A+A+GL+ + PG  
Sbjct: 833 IHLKLSEI-TEMLRREGGYVEDTRFVLHDTSEEEKIDMLHKHSERIAIAFGLISTRPGMP 891

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +R+ KNLRVCGDCH   K++S++ +R+IVVRDA R+HHF  G CSC DFW
Sbjct: 892 IRIAKNLRVCGDCHEFTKLVSKLFERDIVVRDANRFHHFSGGSCSCEDFW 941



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 185/397 (46%), Gaps = 45/397 (11%)

Query: 38  GPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLA 97
           G L   L+  YG+C  V  A  L   MP R   SW +++ AY  +    + + ++  M A
Sbjct: 95  GFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRA 154

Query: 98  --LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
                  PD    AS++KACG+ G  R G +VH   V        +V ++L+ MYAKCGL
Sbjct: 155 SAAPGSAPDGCTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGL 214

Query: 156 PNNARAVFDSIK--LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLV 213
            ++A  VF+ ++   ++  SW +++S   ++GR  +A+ +F                G+ 
Sbjct: 215 LDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFR---------------GMQ 259

Query: 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
            +   ++++ S                  +++  CA   +L LG+++H  ++  G E  L
Sbjct: 260 SAGFPMNSYTSV-----------------AVLQVCAELGLLSLGRELHAALLKCGSE--L 300

Query: 274 FIS-NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
            I  NA++ MYAK   + +A  +FG++  KD +SW S++    Q+    E +  + EM+ 
Sbjct: 301 NIQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQ 360

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
            G +P+    V L  A  H+  +  GR+     I+   +   LQ    L+D+  + G ++
Sbjct: 361 HGFQPDHACVVSLSSALGHLSRLNNGREFHAYAIKQR-LHTDLQVGNTLMDMYIKCGSIE 419

Query: 393 EAENLIKAMPFEPDEPTWAALLS----ACKHHRNTEM 425
            +  + ++M    D  +W  +L+    + +H    EM
Sbjct: 420 CSAKVFESMGIR-DHISWTTILACFAQSSRHSEALEM 455



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/413 (22%), Positives = 179/413 (43%), Gaps = 39/413 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ--R 67
           L+ C           +H   +K+GL +   + N LI  Y KC L+  A  + E + Q  R
Sbjct: 171 LKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDAR 230

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           D  SW S+++   Q     + +++F  M +      + +   ++++ C  LG   LG+++
Sbjct: 231 DVASWNSVVSGCVQNGRTLEALALFRGMQSAG-FPMNSYTSVAVLQVCAELGLLSLGREL 289

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           HA  +                   KCG   N             +   A+L  YA+ GR 
Sbjct: 290 HAALL-------------------KCGSELN-------------IQCNALLVMYAKYGRV 317

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
             A+ +F Q   ++   W +++S  VQ+    +A   F EM + G    D   + S+  A
Sbjct: 318 DSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQ-PDHACVVSLSSA 376

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
             + + L  G++ H   I     + L + N ++DMY KC  I  +  +F  M  +D +SW
Sbjct: 377 LGHLSRLNNGREFHAYAIKQRLHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISW 436

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           T+I+   AQ  +  E L +  E+   G+  + +    ++  C  +  +   +++    I 
Sbjct: 437 TTILACFAQSSRHSEALEMILELQKEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAIR 496

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           +  +   L++   L+D+    G  D + NL + +  + D  +W ++++ C ++
Sbjct: 497 NGLLDLILENR--LIDIYGECGEFDHSLNLFQRVE-KKDIVSWTSMINCCTNN 546



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 12/176 (6%)

Query: 257 GKQIHGLVIALGY---ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           G+Q+H   +  G    +   F++  +V MY +C  +  A+ +F  M  + V SW +++  
Sbjct: 76  GRQVHAHAVTTGSLNEDDDGFLATKLVFMYGRCGRVDDARRLFNGMPARTVFSWNALVGA 135

Query: 314 TAQHGQAEETLALYDEM---VSAGVKPNEVTFVGLIYACSHVGLVGKGR--KLFKSMIED 368
               G A E + +Y  M    + G  P+  T   ++ AC   G  G GR       +   
Sbjct: 136 YLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKAC---GAEGDGRCGGEVHGLAVK 192

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP-DEPTWAALLSACKHHRNT 423
            G+  S      L+ + ++ G LD A  + + +  +  D  +W +++S C  +  T
Sbjct: 193 VGLDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRT 248


>gi|115466812|ref|NP_001057005.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|55773756|dbj|BAD72439.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595045|dbj|BAF18919.1| Os06g0185800 [Oryza sativa Japonica Group]
 gi|125596288|gb|EAZ36068.1| hypothetical protein OsJ_20378 [Oryza sativa Japonica Group]
          Length = 787

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/589 (35%), Positives = 329/589 (55%), Gaps = 34/589 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H+   K GL ++  +   LI  Y KC  V+ A  L + M + D V++ ++++ Y+  
Sbjct: 232 RCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVAYNALISGYSVN 291

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            +   ++++F+ ++ L  L P+     +L+      G   L + +H   + S F  +  V
Sbjct: 292 GMVGSSVNLFTELMTLG-LWPNSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPV 350

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +++  ++ +     +AR  FD++                               P + +
Sbjct: 351 STAITTLHCRLNDMESARKAFDTM-------------------------------PEKTM 379

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W A++SG  Q+     A   F +M +  V   +P+ +SS + ACA    L LGK +H 
Sbjct: 380 ESWNAMISGYAQNGLTEMAVALFEQMVKLNVR-PNPITISSTLSACAQLGALSLGKWLHR 438

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           ++     E  +++  A++DMYAKC  I  A+ IF  M  K+VVSW ++I G   HGQ  E
Sbjct: 439 IITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAE 498

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L LY +M+ A + P   TF+ ++YACSH GLV +G K+F+SM +DY I P ++H TC++
Sbjct: 499 ALKLYKDMLDAHLLPTSATFLSVLYACSHGGLVEEGWKVFRSMTDDYAINPGIEHCTCMV 558

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEP-TWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           DLL R+G L EA  LI   P     P  W ALL AC  H+++++    +  L  L PE+ 
Sbjct: 559 DLLGRAGQLKEAFELISEFPKSAVGPGVWGALLGACMVHKDSDLAKLASQKLFELDPENS 618

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
             Y+LLSN++ S   +   + VR+     ++ K PGY+ IE G   H+F AG+ +HP  +
Sbjct: 619 GYYVLLSNLHTSKKQYSEAAVVRQEAKSRKLVKTPGYTLIEIGNKPHVFMAGDRAHPQSE 678

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            I+  L +L A+M   GY P+T + L+D+E++EKE  +  HSE+LA+A+GLL + PGT +
Sbjct: 679 AIYSYLEKLTAKMIEAGYRPETEAALYDVEEEEKEHMVKVHSEKLAIAFGLLSTEPGTEI 738

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R++KNLRVC DCH   K IS++T+R IVVRDA+R+HHF+DG CSC D+W
Sbjct: 739 RIIKNLRVCLDCHNATKFISKVTQRLIVVRDASRFHHFRDGVCSCGDYW 787



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/399 (22%), Positives = 188/399 (47%), Gaps = 39/399 (9%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           V +A  + + +P  D V W ++L   + +    + +  F+ M+    ++PD    AS++ 
Sbjct: 165 VDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMVCDGSVRPDATTLASVLP 220

Query: 114 ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS 173
           A   +    +G+ VH+        + + V + L+ +Y+KCG   +AR +FD ++  + V+
Sbjct: 221 AAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARCLFDMMEKPDLVA 280

Query: 174 WTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV 233
           + A++S Y+ +G    ++ +F +  +  L LW                            
Sbjct: 281 YNALISGYSVNGMVGSSVNLFTE--LMTLGLWP--------------------------- 311

Query: 234 DIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
              +   L +++   + F    L + +HG V+  G+ +   +S AI  ++ + +D+ +A+
Sbjct: 312 ---NSSTLVALIPVHSPFGHDLLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESAR 368

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
             F  M  K + SW ++I G AQ+G  E  +AL+++MV   V+PN +T    + AC+ +G
Sbjct: 369 KAFDTMPEKTMESWNAMISGYAQNGLTEMAVALFEQMVKLNVRPNPITISSTLSACAQLG 428

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
            +  G+ L + + E+  + P++   T L+D+ ++ G + EA  +   M    +  +W A+
Sbjct: 429 ALSLGKWLHRIITEE-DLEPNVYVMTALIDMYAKCGSISEARRIFNTMD-NKNVVSWNAM 486

Query: 414 LSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           ++    H       ++   +L      P+S   LS +YA
Sbjct: 487 IAGYGLHGQGAEALKLYKDMLDAHLL-PTSATFLSVLYA 524



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 97/176 (55%), Gaps = 1/176 (0%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           L  + LH  ++K G     P+   +   + + + ++ A    + MP++   SW ++++ Y
Sbjct: 330 LLAQCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMPEKTMESWNAMISGY 389

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            Q  L +  +++F  M+ L+ ++P+    +S + AC  LGA  LGK +H          +
Sbjct: 390 AQNGLTEMAVALFEQMVKLN-VRPNPITISSTLSACAQLGALSLGKWLHRIITEEDLEPN 448

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
             V ++L+DMYAKCG  + AR +F+++  KN VSW AM++ Y   G+  +A+++++
Sbjct: 449 VYVMTALIDMYAKCGSISEARRIFNTMDNKNVVSWNAMIAGYGLHGQGAEALKLYK 504



 Score = 92.0 bits (227), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 129/284 (45%), Gaps = 11/284 (3%)

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
           +A+   Y    R   A ++F+  P  +  LW  L++GL  S    +A  SF  M  +G  
Sbjct: 153 SALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLSGS----EAVESFARMVCDGSV 208

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
             D   L+S++ A A  A + +G+ +H      G      +   ++ +Y+KC D+ +A+ 
Sbjct: 209 RPDATTLASVLPAAAEVADVTMGRCVHSFAEKCGLAEHEHVLTGLISLYSKCGDVESARC 268

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG- 353
           +F  M + D+V++ ++I G + +G    ++ L+ E+++ G+ PN  T V LI   S  G 
Sbjct: 269 LFDMMEKPDLVAYNALISGYSVNGMVGSSVNLFTELMTLGLWPNSSTLVALIPVHSPFGH 328

Query: 354 -LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
            L+    +     +   G T +    T +  L  R   ++ A      MP E    +W A
Sbjct: 329 DLLA---QCLHGFVLKSGFTANSPVSTAITTLHCRLNDMESARKAFDTMP-EKTMESWNA 384

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
           ++S    +  TEM   +   ++ L    P+   + S + A A +
Sbjct: 385 MISGYAQNGLTEMAVALFEQMVKLNVR-PNPITISSTLSACAQL 427



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 66/144 (45%), Gaps = 7/144 (4%)

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
           F+++A+  +Y   S +  A+ +F  +   D V W +++ G +      E +  +  MV  
Sbjct: 150 FVASALAKLYFVLSRVDHARKVFDTVPSPDTVLWNTLLAGLS----GSEAVESFARMVCD 205

Query: 334 G-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
           G V+P+  T   ++ A + V  V  GR    S  E  G+       T L+ L S+ G ++
Sbjct: 206 GSVRPDATTLASVLPAAAEVADVTMGR-CVHSFAEKCGLAEHEHVLTGLISLYSKCGDVE 264

Query: 393 EAENLIKAMPFEPDEPTWAALLSA 416
            A  L   M  +PD   + AL+S 
Sbjct: 265 SARCLFDMME-KPDLVAYNALISG 287



 Score = 40.4 bits (93), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 69/180 (38%), Gaps = 16/180 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA+       K LH  I +  L     +   LID Y KC  +  A  +   M  ++ 
Sbjct: 421 LSACAQLGALSLGKWLHRIITEEDLEPNVYVMTALIDMYAKCGSISEARRIFNTMDNKNV 480

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++  Y       + + ++  ML    L P    F S++ AC   G    G +   
Sbjct: 481 VSWNAMIAGYGLHGQGAEALKLYKDMLD-AHLLPTSATFLSVLYACSHGGLVEEGWK--- 536

Query: 130 CFVLSPFCDDDVVK------SSLVDMYAKCGLPNNARAVFDSIKLKNSVS---WTAMLSA 180
             V     DD  +       + +VD+  + G    A  +      K++V    W A+L A
Sbjct: 537 --VFRSMTDDYAINPGIEHCTCMVDLLGRAGQLKEAFELISEFP-KSAVGPGVWGALLGA 593


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  399 bits (1025), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/547 (35%), Positives = 314/547 (57%), Gaps = 34/547 (6%)

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           M  RD  SW S++  Y Q ++P + + +   ML   + +P+ F FASL+KA G+  ++ +
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRG-RFKPNGFTFASLLKAAGASASSGI 59

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G+Q+HA  V   + DD  V S+L+DMYA                               R
Sbjct: 60  GEQIHALTVKYDWHDDVYVGSALLDMYA-------------------------------R 88

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            GR   A+ +F+Q   +N   W AL++G  +  +       F EM+R G +       SS
Sbjct: 89  CGRMDMAIAVFDQLESKNGVSWNALIAGFARKGDGETTLLMFAEMQRNGFEATH-FTYSS 147

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           +  A A    LE GK +H  +I  G     F+ N I+DMYAK   +I A+ +F  + +KD
Sbjct: 148 VFSAIAGIGALEQGKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKD 207

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           +V+W S++   AQ+G   E +  ++EM   GV  N++TF+ ++ ACSH GLV +G++ F 
Sbjct: 208 LVTWNSMLTAFAQYGLGREAVTHFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYF- 266

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
            M++++ + P + HY  ++DLL R+G L++A   I  MP +P    W ALL +C+ H+N 
Sbjct: 267 DMMKEHNLEPEIDHYVTVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNA 326

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           ++G   A+H+  L P+D    +LL N+YAS   W   ++VRK+M    VKKEP  S++E 
Sbjct: 327 KIGQFAADHVFELDPDDTGPPVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEI 386

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
               H+F A + +HP  +EI++   E+  ++++ GYVP+T  VL  ++++E++ +L +HS
Sbjct: 387 ENSVHMFVANDDTHPRSEEIYKKWEEISIQIRKAGYVPNTDYVLLHVDEQERQAKLQYHS 446

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           E++A+A+ L+    G  +R++KN+R+CGDCH   + IS++ +REIVVRD  R+HHF  G 
Sbjct: 447 EKIALAFALINMPLGATIRIMKNIRICGDCHSAFRYISKVFEREIVVRDTNRFHHFSSGS 506

Query: 604 CSCNDFW 610
           CSC D+W
Sbjct: 507 CSCGDYW 513



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/237 (26%), Positives = 117/237 (49%), Gaps = 33/237 (13%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA  +K   H    + + L+D Y +C  +  A  + +++  ++ VSW +++  + + 
Sbjct: 61  EQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIAGFARK 120

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              + T+ +F+ M   +  +  HF ++S+  A   +GA   GK VHA  + S       V
Sbjct: 121 GDGETTLLMFAEM-QRNGFEATHFTYSSVFSAIAGIGALEQGKWVHAHMIKSGERLSAFV 179

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++++DMYAK G   +AR VFD +  K+ V+W +ML+A+A+ G  ++A+  FE       
Sbjct: 180 GNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFE------- 232

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                   EMR+ GV + + +   SI+ AC++  +++ GKQ
Sbjct: 233 ------------------------EMRKCGVHL-NQITFLSILTACSHGGLVKEGKQ 264



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 8/162 (4%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HA +IK G      + NT++D Y K   +  A  + + + ++D V+W S+LTA+ Q 
Sbjct: 162 KWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQY 221

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV---LSPFCDD 139
            L ++ ++ F  M     +  +   F S++ AC   G  + GKQ         L P  D 
Sbjct: 222 GLGREAVTHFEEMRKC-GVHLNQITFLSILTACSHGGLVKEGKQYFDMMKEHNLEPEIDH 280

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSA 180
            V   ++VD+  + GL N+A      + +K + + W A+L +
Sbjct: 281 YV---TVVDLLGRAGLLNDALVFIFKMPMKPTAAVWGALLGS 319


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 230/661 (34%), Positives = 348/661 (52%), Gaps = 77/661 (11%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           +  + +  +K G H    L N LIDAY KC  V YA  + +E+P R  V+W S++ +Y +
Sbjct: 96  ITKIQSHALKRGFHH--SLGNKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIR 153

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG-----------ATRLGKQVHAC 130
               ++ I I+  M+  D + PD F F+S+ KA   LG           +  LG  V   
Sbjct: 154 NGRSKEAIDIYQRMVP-DGILPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNV 212

Query: 131 FVLSPFCD---------------------DDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           FV S   D                     D V+ ++L+  Y+  G    +  VF ++  K
Sbjct: 213 FVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKK 272

Query: 170 N---------------------------------------SVSWTAMLSAYARSGRKKDA 190
                                                     S T++L+ Y R G   D+
Sbjct: 273 GIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDS 332

Query: 191 MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN 250
           +++F+Q    N   WT+++ GLVQ+  E  A   F +M R  +   +   LSS++ AC++
Sbjct: 333 LKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSI-TPNSFTLSSVLRACSS 391

Query: 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
            A+LE GKQIH +V+  G +   ++  A++D Y KC     A+ +F  +   DVVS  S+
Sbjct: 392 LAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSM 451

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370
           I   AQ+G   E L L+  M   G++PN VT++G++ AC++ GL+ +G  +F S      
Sbjct: 452 IYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGN 511

Query: 371 ITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVA 430
           I  +  HY C++DLL R+G L EAE LI  +    D   W  LLSAC+ H + EM  RV 
Sbjct: 512 IELTKDHYACMVDLLGRAGRLKEAEMLINQVNI-SDVVIWRTLLSACRIHGDVEMAKRVM 570

Query: 431 NHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIF 490
           N ++ L PED  +++LLSN+YAS   W  V +++  M  M +KK P  S+++  +  H F
Sbjct: 571 NRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMREMRLKKNPAMSWVDVEREIHTF 630

Query: 491 YAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAY 550
            AG+ SHP   +I E L EL  ++K  GYVPDT  VL D+++++K R L++HSE+LAVA+
Sbjct: 631 MAGDWSHPNFRDIREKLEELIEKVKELGYVPDTRFVLQDLDEEKKIRSLYYHSEKLAVAF 690

Query: 551 GLLKS-VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
            L +S    T +R++KNLRVCGDCH  MK +S+I  R+I+ RD  R+HHF++G CSC D+
Sbjct: 691 ALWRSNYKNTTIRILKNLRVCGDCHTWMKFVSKIVGRDIIARDVKRFHHFRNGLCSCGDY 750

Query: 610 W 610
           W
Sbjct: 751 W 751



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 112/481 (23%), Positives = 229/481 (47%), Gaps = 58/481 (12%)

Query: 36  QYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTM 95
           ++ P P ++  A  + D + + +++LE    R    + S L+ ++Q+N+  + + I  T+
Sbjct: 17  RFSPAPVSMFIADTQADKL-HGNNVLEREENRVSAFFKS-LSHFSQSNIKIRKLCITETI 74

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
            +         +++SL++ C  + +     ++ +  +   F     + + L+D Y KCG 
Sbjct: 75  QSTK-------LYSSLIQQCIGIKSITDITKIQSHALKRGF--HHSLGNKLIDAYLKCGS 125

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
              AR VFD +  ++ V+W +M+++Y R+GR K+A++I+++                   
Sbjct: 126 VVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQR------------------- 166

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE-SCLF 274
                       M  +G+ + D    SS+  A ++  ++  G++ HG  + LG   S +F
Sbjct: 167 ------------MVPDGI-LPDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVF 213

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
           + +A+VDMYAK   +  A+ +  ++  KDVV +T++IVG + HG+  E+L ++  M   G
Sbjct: 214 VGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKG 273

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
           ++ NE T   ++  C ++  +  GR L   +I   G+  ++   T LL +  R G +D++
Sbjct: 274 IEANEYTLSSVLVCCGNLEDLTSGR-LIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDS 332

Query: 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA-- 452
             + K     P++ TW +++     +   E+       +L      P+S+ L S + A  
Sbjct: 333 LKVFKQF-INPNQVTWTSVIVGLVQNGREEIALLKFRQMLR-SSITPNSFTLSSVLRACS 390

Query: 453 SAAMWQHVSKVRKLMSV--MEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTEL 510
           S AM +   ++  ++    +++ K  G + I+       FY    S  +   +F  L E+
Sbjct: 391 SLAMLEQGKQIHAIVMKFGLDIDKYVGAALID-------FYGKCGSTEIARSVFNGLLEV 443

Query: 511 D 511
           D
Sbjct: 444 D 444



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/316 (22%), Positives = 137/316 (43%), Gaps = 46/316 (14%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           C   +   + + +H  I+K GL        +L+  Y +C LV  +  + ++    + V+W
Sbjct: 288 CGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTW 347

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            S++    Q    +  +  F  ML    + P+ F  +S+++AC SL     GKQ+HA  +
Sbjct: 348 TSVIVGLVQNGREEIALLKFRQMLR-SSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVM 406

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
                 D  V ++L+D Y KCG    AR+VF+ +   + VS  +M+ +YA++G   +A++
Sbjct: 407 KFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQ 466

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F               SG                M+  G++  + +    ++ AC N  
Sbjct: 467 LF---------------SG----------------MKDTGLE-PNNVTWLGVLSACNNAG 494

Query: 253 VLELGKQIH-------GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
           +LE G  I         + +   + +C+      VD+  +   +  A+ +  ++   DVV
Sbjct: 495 LLEEGCHIFSSARNSGNIELTKDHYACM------VDLLGRAGRLKEAEMLINQVNISDVV 548

Query: 306 SWTSIIVGTAQHGQAE 321
            W +++     HG  E
Sbjct: 549 IWRTLLSACRIHGDVE 564



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 12/177 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C+   +    K +HA ++K GL     +   LID YGKC   + A  +   + + D 
Sbjct: 386 LRACSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDV 445

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS  S++ +Y Q     + + +FS M     L+P++  +  ++ AC + G    G     
Sbjct: 446 VSVNSMIYSYAQNGFGHEALQLFSGMKDTG-LEPNNVTWLGVLSACNNAGLLEEG----- 499

Query: 130 CFVLSPFCDDDVVK------SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
           C + S   +   ++      + +VD+  + G    A  + + + + + V W  +LSA
Sbjct: 500 CHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQVNISDVVIWRTLLSA 556


>gi|359491264|ref|XP_002280276.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 684

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/597 (36%), Positives = 334/597 (55%), Gaps = 10/597 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVS--WASILTAY 79
           ++ +HAQ++   L     L  +LI  Y        A  L +  P        W  ++  Y
Sbjct: 90  LQQIHAQVVTQALSSNASLTASLIHCYLCAKNHPNARILFDHYPSPSPPIKLWNVMIRTY 149

Query: 80  NQANLPQKTISIFSTMLALD---KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
           ++    Q+ I +F  ML LD   ++ PD + F  ++ +C    +   G+ VH   V S F
Sbjct: 150 SKIRNSQEPIHLFLRMLTLDGPMQVVPDEYTFTFVITSCSHQISLIYGEIVHGMVVKSGF 209

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             +  V +S+++M +      +AR VF+ +  ++  SWT++L  YA+ G    A E+F  
Sbjct: 210 ESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTSLLGGYAKHGEMDRACELFNM 269

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP--LVLSSIVGACANFAVL 254
            PVRN   W  ++SG +      +A   F  M  +  D V+P   VL  ++ ACA+   L
Sbjct: 270 MPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCD--DRVNPNEAVLVCVLSACAHLGAL 327

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
           + G  IH  +  +G      IS A++DMYAKC  I  A  +F  + ++DV+S+TS+I G 
Sbjct: 328 DQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVFNGICKRDVLSFTSMISGL 387

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
           + HG  ++ L ++ +M+   V PNE+T +G++  CSH GLV +G  +  +M   +GI P 
Sbjct: 388 SYHGLGKDALRVFYQMLDENVMPNEITILGVLNGCSHSGLVEEGSSILANMESLWGIAPK 447

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           ++HY C +DLL R+G+L+ A  ++K MP EPD   W ALLSA + H N  +G ++ +H+ 
Sbjct: 448 IEHYGCYIDLLGRAGYLERALEVVKTMPMEPDIVIWRALLSASRIHHNVNLGEQIISHIG 507

Query: 435 SLKPEDPS-SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAG 493
            LK  D +   +LLSN+YAS   W+ V+++RKLM     +  PG S+IE     H F   
Sbjct: 508 QLKSSDHNGGEVLLSNLYASLGRWERVTEMRKLMVDRRSESSPGCSWIEVNGLVHEFRVA 567

Query: 494 ETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLL 553
           +  HP   EI   L E+   + + GY  +T  V  D+ ++EKE+ + WHSE+LA+A+GL+
Sbjct: 568 DQLHPQIVEIRNKLNEILKRLSQIGYSANTMQVSFDLNEEEKEQAVAWHSEKLAIAFGLM 627

Query: 554 KSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            + PGT++R+VKNLR C DCH  +K IS++  REIVVRD +R+H F +G CSC DFW
Sbjct: 628 STEPGTLIRIVKNLRTCEDCHSALKTISQVYGREIVVRDRSRFHTFIEGDCSCKDFW 684



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 32/213 (15%)

Query: 16  HQIALTV-KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWAS 74
           HQI+L   + +H  ++K G      + N++I+       ++ A  +  +M +RD  SW S
Sbjct: 190 HQISLIYGEIVHGMVVKSGFESNLYVGNSVINMCSVFARMEDARKVFNQMSERDVFSWTS 249

Query: 75  ILTAYNQAN-----------LPQKT--------------------ISIFSTMLALDKLQP 103
           +L  Y +             +P +                     ++ F  ML  D++ P
Sbjct: 250 LLGGYAKHGEMDRACELFNMMPVRNDVSWAVMISGFLGCGRYPEALTFFCNMLCDDRVNP 309

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           +  V   ++ AC  LGA   G  +H             + ++L+DMYAKCG  + A  VF
Sbjct: 310 NEAVLVCVLSACAHLGALDQGNWIHLYIDKIGIRQSSNISTALIDMYAKCGRIDCASRVF 369

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           + I  ++ +S+T+M+S  +  G  KDA+ +F Q
Sbjct: 370 NGICKRDVLSFTSMISGLSYHGLGKDALRVFYQ 402


>gi|125547694|gb|EAY93516.1| hypothetical protein OsI_15309 [Oryza sativa Indica Group]
          Length = 613

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/571 (38%), Positives = 323/571 (56%), Gaps = 11/571 (1%)

Query: 42  NTLIDAYGKC-DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDK 100
           N L+  Y +    +  A HL + +P  D VS+ ++L  +  +        +F++M   D 
Sbjct: 52  NCLLAGYARAPGRLADARHLFDRIPTPDVVSYNTLLLCHFASGDADGARRLFASMPVRDV 111

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
                  + ++V      GA    K V   F+  P   + V  +++V  +A  G  + A 
Sbjct: 112 AS-----WNTMVSGLSKSGAVEEAKVV---FLAMPV-RNSVSWNAMVSGFACSGDMSTAE 162

Query: 161 AVF-DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
             F ++ + +++V WTAM+S Y   G    A++ FE  PVRNL  W A+V+G V++ +  
Sbjct: 163 EWFRNAPEKEDAVLWTAMVSGYMDIGNVVKAIKYFEAMPVRNLVSWNAVVAGYVKNSHAD 222

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           DA   F  M RE     +   LSS++  C+N + L  GKQIH   + L     L +  ++
Sbjct: 223 DALRLFRTMVREANVQPNASTLSSVLLGCSNLSALGFGKQIHQWCMKLLLSRNLTVGTSL 282

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           V MY KC D+ +A  +FG M  +DVV+W ++I G AQHG  +E + L++ M   GV+PN 
Sbjct: 283 VSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQHGDGKEAINLFERMKDEGVEPNW 342

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           +TFV ++ AC H GL   G + F+ M E YGI P + HY+C++DLL R+G L+ A + I+
Sbjct: 343 ITFVVVLTACIHTGLCDFGIQCFEGMQELYGIEPRVDHYSCMVDLLCRAGKLERAVDFIR 402

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
           +MPFEP    +  LL+AC+ ++N E     A  L+   P+   +Y+ L+N+YA A  W  
Sbjct: 403 SMPFEPHPSAYGTLLAACRVYKNLEFAELAAGKLIEKDPQSAGAYVQLANIYAVANQWDD 462

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
           VS+VR+ M    V K PGYS+IE     H F + +  HP    I E L +L   MK  GY
Sbjct: 463 VSRVRRWMKDNTVVKTPGYSWIEIKGVLHEFRSNDRLHPQLYLIHEKLGQLAERMKEMGY 522

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
           VPD   VLHD+++  K + L  HSE+LA+A+GL+ +  G  LR+ KNLRVCGDCH   K+
Sbjct: 523 VPDLDFVLHDVDETMKVQMLMRHSEKLAIAFGLISTAHGMTLRIFKNLRVCGDCHNAAKV 582

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           IS I  REI++RD TR+HHF+ G CSC+D+W
Sbjct: 583 ISMIEDREIILRDTTRFHHFRGGHCSCDDYW 613



 Score = 48.1 bits (113), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 4/109 (3%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   +KL L +   +  +L+  Y KC  +  A  L  EM  RD V+W ++++ Y Q 
Sbjct: 261 KQIHQWCMKLLLSRNLTVGTSLVSMYCKCGDLSSACILFGEMHTRDVVAWNAMISGYAQH 320

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
              ++ I++F  M   + ++P+   F  ++ AC   G    G Q   CF
Sbjct: 321 GDGKEAINLFERMKD-EGVEPNWITFVVVLTACIHTGLCDFGIQ---CF 365


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/601 (36%), Positives = 328/601 (54%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+R       + + A  +K GL     + ++LI  Y  C  V  A  + +   +   
Sbjct: 127 LKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGV 186

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V W +I+ AY +     + + +F  ML +  +  D     S+V ACG +G  +LGK V  
Sbjct: 187 VMWNAIVAAYLKNGDWMEVVEMFKGMLEVG-VAFDEVTLVSVVTACGRIGDAKLGKWV-- 243

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               +   D++             GL  N + V            TA++  YA+ G    
Sbjct: 244 ----AGHVDEE-------------GLARNPKLV------------TALMDMYAKCGEIGK 274

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F+    R++  W+A++SG  Q+    +A   F EM+   V+  D + + S++ ACA
Sbjct: 275 ARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEMQLARVEPND-VTMVSVLSACA 333

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LE GK +H  V          +  A+VD YAKC  I  A + F  M  K+  +WT+
Sbjct: 334 VLGALETGKWVHSYVRRKRLSLTTILGTALVDFYAKCGCIDDAVEAFESMPVKNSWTWTA 393

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G A +G+  E L L+  M  AG++P +VTF+G++ ACSH  LV +GR+ F SM  DY
Sbjct: 394 LIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVLMACSHSCLVEEGRRHFDSMARDY 453

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI P ++HY C++DLL R+G +DEA   I+ MP EP+   W ALLS+C  HRN  +G   
Sbjct: 454 GIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEA 513

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
              ++SL P     Y+LLSN+YASA  W+  + VRK M    ++K PG S IE       
Sbjct: 514 LKQIISLNPSHSGDYVLLSNIYASAGQWKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFE 573

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F+A ++ HP   EI++ + E+   +K  GYVP+T+ V  ++E++EKE  +  HSE+LA+A
Sbjct: 574 FFAEDSDHPELREIYQKVEEMIGRIKVAGYVPNTADVRLEVEEREKEVSVSHHSEKLAIA 633

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GL+K  PG  +R+ KNLRVC DCH   K+IS++  REIVVRD   +HHFKDG CSCND+
Sbjct: 634 FGLMKLDPGATIRLSKNLRVCADCHSATKLISKVYDREIVVRDRNIFHHFKDGTCSCNDY 693

Query: 610 W 610
           W
Sbjct: 694 W 694



 Score = 90.9 bits (224), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 145/329 (44%), Gaps = 13/329 (3%)

Query: 155 LPNNARAVFDSIKLKNSV-SWTAMLSAYARSGRKKD-AMEIFEQAPVRNLFL--WTALVS 210
           LP    A+  S +L  S  S+ ++L A A S      A+ +F   P   L    +  L+ 
Sbjct: 32  LPQLHAALIKSGELTGSAKSFHSLLEAAAASPTLLPYAVSLFRLGPRPPLSTPCYNVLMR 91

Query: 211 GLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLSSIVGACANFAVLELGKQIHGLVIALGY 269
             + + +  DA + FIEM         D    +  + +C+    L++G+ +    +  G 
Sbjct: 92  AFLHAGHPEDALHLFIEMLHAASACPADQHTAACALKSCSRMCALDVGRGVQAYAVKRGL 151

Query: 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDE 329
            +  F+ ++++ MYA C D+ AA+ +F       VV W +I+    ++G   E + ++  
Sbjct: 152 VADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLKNGDWMEVVEMFKG 211

Query: 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389
           M+  GV  +EVT V ++ AC  +G    G K     +++ G+  + +  T L+D+ ++ G
Sbjct: 212 MLEVGVAFDEVTLVSVVTACGRIGDAKLG-KWVAGHVDEEGLARNPKLVTALMDMYAKCG 270

Query: 390 HLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE--MGTRVANHLLSLKPEDPSSYILL 447
            + +A  L   M    D   W+A++S           +G      L  ++P D +   +L
Sbjct: 271 EIGKARRLFDGMQSR-DVVAWSAMISGYTQADQCREALGLFSEMQLARVEPNDVTMVSVL 329

Query: 448 SNVYASAAM----WQHVSKVRKLMSVMEV 472
           S      A+    W H    RK +S+  +
Sbjct: 330 SACAVLGALETGKWVHSYVRRKRLSLTTI 358


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/604 (34%), Positives = 331/604 (54%), Gaps = 33/604 (5%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L+ L  C       ++K LH   I+ G      + N  + AY KC ++  A  +   M  
Sbjct: 240 LNILPACLEISQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMET 299

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           +   SW +++    Q   P+K ++++  M     L PD F   SL+ A   L + R GK+
Sbjct: 300 KTVNSWNALIGGCAQNGDPRKALNLYIQM-TYSGLVPDWFTIGSLLLASAHLKSLRYGKE 358

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           VH   +      D  +  SL+ +Y  CG  ++AR +FD ++ K+SVS             
Sbjct: 359 VHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVS------------- 405

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
                             W A++SG  Q+    DA   F ++  +G    D  V+S ++G
Sbjct: 406 ------------------WNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVS-VLG 446

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           AC+  + L LGK+ H   +       +F++ + +DMYAK   I  ++ +F  ++ KD+ S
Sbjct: 447 ACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLAS 506

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W +II     HG  EE++ L++ M   G  P+  TF+G++  CSH GLV +G K F  M 
Sbjct: 507 WNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEMQ 566

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             +GI P L+HY C++D+L R+G LD+A  L+  MP +PD   W++LLS C++    E+G
Sbjct: 567 NFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRVWSSLLSFCRNFGELEIG 626

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
             VA  LL L+P++  +Y+ LSN+YA +  W  V +VR+++  + ++K+ G S+IE G  
Sbjct: 627 QIVAEKLLELEPKNVENYVSLSNLYAGSGRWDDVRRVRQMIKDIGLQKDAGCSWIELGGK 686

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            H F AG+   P   E+     +L+ +M + GY P+TS+VLHD+++++K  +L  HSE+L
Sbjct: 687 VHSFVAGDNLLPQSKEMSMTWRKLEKKMCKIGYKPNTSAVLHDVDEEKKIEKLRGHSEKL 746

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+ +GLL +  GT LR+ KNLR+C DCH   K +S +T REI++RD  R+HHFKDG CSC
Sbjct: 747 AICFGLLNTTKGTTLRIFKNLRICVDCHNASKFMSEVTGREIIIRDNKRFHHFKDGLCSC 806

Query: 607 NDFW 610
            D+W
Sbjct: 807 GDYW 810



 Score =  152 bits (384), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 198/420 (47%), Gaps = 44/420 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VCAR         +H   +KLGL +   + N+L+D Y KC  +  A  L ++  +++ 
Sbjct: 141 LPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNA 200

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++          +  ++F  M   + ++ +     +++ AC  +   R  K++H 
Sbjct: 201 VSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHG 260

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +   F  D++V +  V  YAKCG+   A  VF S++ K   SW A++   A++G  + 
Sbjct: 261 YSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRK 320

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ ++ Q             SGLV                       D   + S++ A A
Sbjct: 321 ALNLYIQMT----------YSGLVP----------------------DWFTIGSLLLASA 348

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +   L  GK++HG V+  G E   FI  +++ +Y  C +  +A+ +F  M  K  VSW +
Sbjct: 349 HLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNA 408

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK-----LFKS 364
           +I G +Q+G  E+ L L+ ++VS G +P+++  V ++ ACS    +  G++     L   
Sbjct: 409 MISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALKAL 468

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           ++ED  +  S       +D+ ++SG + E+ ++   +    D  +W A+++A   H + E
Sbjct: 469 LMEDVFVACS------TIDMYAKSGCIKESRSVFDGLK-NKDLASWNAIIAAYGVHGDGE 521



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/395 (27%), Positives = 179/395 (45%), Gaps = 34/395 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  +IK+GL     + N LI  YGK   V  A  +   MP R+ VSW SI++ +++ 
Sbjct: 51  EVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSEN 110

Query: 83  NLPQKTISIFSTMLALDK-LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
              +    +   M+A ++ L PD     +++  C      ++G ++H   V     +D  
Sbjct: 111 GFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVR 170

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V +SLVDMY+KCG    A+ +FD                  ++ RK             N
Sbjct: 171 VNNSLVDMYSKCGYLTEAQMLFD------------------KNNRK-------------N 199

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
              W  ++ GL       +AF  F EM+ +    V+ + + +I+ AC   + L   K++H
Sbjct: 200 AVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELH 259

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           G  I  G++    ++N  V  YAKC  +I A+ +F  M  K V SW ++I G AQ+G   
Sbjct: 260 GYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPR 319

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           + L LY +M  +G+ P+  T   L+ A +H+  +  G+++    +  +G+         L
Sbjct: 320 KALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEV-HGFVLRHGLEIDSFIGISL 378

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           L L    G    A  L   M  E    +W A++S 
Sbjct: 379 LSLYIHCGESSSARLLFDGME-EKSSVSWNAMISG 412



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 160/349 (45%), Gaps = 41/349 (11%)

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
            A ++  L    I +F  ++   +   D+F F  ++KAC       LG+ +H   +    
Sbjct: 3   VAVHRNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGL 62

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             D  V ++L+ MY K G  + A  VF  + ++N VSW +++S ++ +G  KD  ++  +
Sbjct: 63  LLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVE 122

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
                      +++G                   EG+ + D   L +++  CA    +++
Sbjct: 123 -----------MMAG------------------EEGL-LPDIATLVTVLPVCAREVDVQM 152

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           G +IHGL + LG    + ++N++VDMY+KC  +  A+ +F +  RK+ VSW ++I G   
Sbjct: 153 GIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLCT 212

Query: 317 HGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
            G   E   L+ EM +   ++ NEVT + ++ AC  +  +   ++L       Y I    
Sbjct: 213 KGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKEL-----HGYSIRHGF 267

Query: 376 QH----YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           Q+        +   ++ G L  AE +  +M  +    +W AL+  C  +
Sbjct: 268 QYDELVANGFVAAYAKCGMLICAERVFYSMETKTVN-SWNALIGGCAQN 315


>gi|224080790|ref|XP_002306231.1| predicted protein [Populus trichocarpa]
 gi|222849195|gb|EEE86742.1| predicted protein [Populus trichocarpa]
          Length = 480

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 202/516 (39%), Positives = 314/516 (60%), Gaps = 37/516 (7%)

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
           ++ + ++P+ F +++++ A   +       ++HA  +   +     V ++L+D Y K G 
Sbjct: 1   MSREGIKPNDFTYSTILTAQPGVSPF----EMHAQAIKRNYVKSPSVGTALLDAYVKRGN 56

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
            + A  VF  I+ K+ V+W+AM+  YA+ G  + A+ I                      
Sbjct: 57  VDEASKVFQRIEEKDIVAWSAMICGYAQIGDTEGAVRI---------------------- 94

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACAN-FAVLELGKQIHGLVIALGYESCLF 274
                    F++M +E +   +    S I+ ACA   A +E GKQ+H   I   + + L 
Sbjct: 95  ---------FVQMAKEKIK-PNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALC 144

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
           +S+A++ MY+K  DI +A ++F R R +D+VSW SII G AQHG   + L +++EM    
Sbjct: 145 VSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFEEMQRQN 204

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
           ++ + VTF+G+I AC+H GL  +G++ F  M++D+ I P ++HY+C++DL  R+G L +A
Sbjct: 205 LEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRMEHYSCMVDLYGRAGMLVKA 264

Query: 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454
             +I  MPF      W  LL+A   HRN E+G   A+ L+SL+P++P+SY+LL+N+YAS 
Sbjct: 265 MEIINEMPFPASANVWRTLLAASCIHRNLEVGKLAADKLISLQPQNPASYVLLTNMYASV 324

Query: 455 AMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEM 514
             W+  +KVRKLM   +VKK  GYS+IE    ++ F AG+ SHPL ++I+  L EL  ++
Sbjct: 325 GNWKERAKVRKLMEEKKVKKVAGYSWIEVKNKTYTFLAGDVSHPLSNQIYAKLEELSCQL 384

Query: 515 KRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCH 574
           K  GY PDTS V  D++++ KE  L  HSERLA+A+GL+ + PGT L++VKNLRVCGDCH
Sbjct: 385 KGAGYQPDTSYVFQDVDEEHKEAILSQHSERLAIAFGLIGTPPGTPLQIVKNLRVCGDCH 444

Query: 575 IVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            V+K+IS +  R+IVVRD+ R+HHFK G CSC D+W
Sbjct: 445 SVIKLISILEGRDIVVRDSNRFHHFKGGLCSCGDYW 480



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 165/353 (46%), Gaps = 51/353 (14%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HAQ IK    +   +   L+DAY K   V  A  + + + ++D V+W++++  Y Q   
Sbjct: 28  MHAQAIKRNYVKSPSVGTALLDAYVKRGNVDEASKVFQRIEEKDIVAWSAMICGYAQIGD 87

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA-TRLGKQVHACFVLSPFCDDDVVK 143
            +  + IF  M A +K++P+ + F+ ++ AC +  A    GKQ+HA  + S F +   V 
Sbjct: 88  TEGAVRIFVQM-AKEKIKPNEYTFSGIINACAAPTAGVEQGKQLHAWSIKSRFNNALCVS 146

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           S+L+ MY+K G   +A  VF   + ++ VSW +++S YA+ G  + A+E+FE        
Sbjct: 147 SALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQHGYGRKALEVFE-------- 198

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
                                  EM+R+ +++ D +    ++ AC +  +   G++   +
Sbjct: 199 -----------------------EMQRQNLEM-DGVTFIGVISACTHTGLANEGQRYFDI 234

Query: 264 VIA-------LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS-WTSIIVGTA 315
           ++        + + SC+      VD+Y +   ++ A +I   M      + W +++  + 
Sbjct: 235 MVKDHHIEPRMEHYSCM------VDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAASC 288

Query: 316 QHGQAEETLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            H   E      D+++S  ++P N  ++V L    + VG   +  K+ K M E
Sbjct: 289 IHRNLEVGKLAADKLIS--LQPQNPASYVLLTNMYASVGNWKERAKVRKLMEE 339



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 3/160 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LHA  IK   +    + + L+  Y K   ++ A  + +   +RD VSW SI++ Y Q 
Sbjct: 128 KQLHAWSIKSRFNNALCVSSALLTMYSKRGDIESAFEVFKRQRERDLVSWNSIISGYAQH 187

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +K + +F  M     L+ D   F  ++ AC   G    G++     V     +  + 
Sbjct: 188 GYGRKALEVFEEM-QRQNLEMDGVTFIGVISACTHTGLANEGQRYFDIMVKDHHIEPRME 246

Query: 143 K-SSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSA 180
             S +VD+Y + G+   A  + + +    S + W  +L+A
Sbjct: 247 HYSCMVDLYGRAGMLVKAMEIINEMPFPASANVWRTLLAA 286


>gi|413937268|gb|AFW71819.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 830

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/609 (35%), Positives = 346/609 (56%), Gaps = 39/609 (6%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S Y   + +CA  +     + LH+ ++K G H YG +   L+DAY K   +  A  +   
Sbjct: 259 STYSTVINLCANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLL 318

Query: 64  MP-QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
           M   ++ VSW +++    Q        ++FS M   D + P+   +++++    ++    
Sbjct: 319 MSGSQNVVSWTAMIDGCIQNGDIPLAAALFSRMRE-DGVAPNDLTYSTIL----TVSEAS 373

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
              Q+HA           V+K++      +C                     TA++ +Y+
Sbjct: 374 FPPQIHA----------QVIKTNY-----EC----------------TPTVGTALMVSYS 402

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
           +    ++A+ IF+    +++  W+A+++   Q+ +   A  +FI+M   G+   +   +S
Sbjct: 403 KLCSTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDCNGATNAFIKMTMHGLK-PNEFTIS 461

Query: 243 SIVGACANFAV-LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           S + ACA+ A  ++LG+Q H + I       L +S+A+V MYA+   I  A+ +F R   
Sbjct: 462 SAIDACASPAAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIENAQCVFERQTD 521

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           +D++SW S++ G AQHG +++ L ++ +M   G+  + +TF+ +I  C+H GLV +G++ 
Sbjct: 522 RDLLSWNSMLSGYAQHGYSQKALDVFRQMEVEGIDMDGLTFLSVIMGCAHAGLVEEGQQY 581

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR 421
           F  M+ DYGITP++ HY C++DL SR+G LDE  +LI+ MPF      W ALL AC+ H+
Sbjct: 582 FDLMVRDYGITPTMDHYACMVDLYSRAGKLDETMSLIEGMPFPAGPTIWRALLGACRVHK 641

Query: 422 NTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYI 481
           N E+G   A  LLSL+P D ++Y+LLSN+Y++A  W+   +VRKLM   +V+KE G S+I
Sbjct: 642 NVELGKLAAEKLLSLEPLDSATYVLLSNIYSAAGKWKEKDEVRKLMDTKKVRKEAGCSWI 701

Query: 482 EFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW 541
           +     H F A + SHPL ++I+  L  + A++K+ GY PDTS V HD+ + +KE  L  
Sbjct: 702 QIKNKVHFFIASDKSHPLSEQIYAKLRAMTAKLKQEGYCPDTSFVPHDVAEDQKEAMLAM 761

Query: 542 HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKD 601
           HSERLA+A+GL+ + P   L + KNLRV GD H VMKM+S I  REIV+RD  R+HHFK 
Sbjct: 762 HSERLALAFGLIATPPAAPLHIFKNLRVSGDGHTVMKMVSEIEDREIVMRDCCRFHHFKS 821

Query: 602 GKCSCNDFW 610
           G CSC DFW
Sbjct: 822 GVCSCGDFW 830



 Score =  152 bits (383), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 120/450 (26%), Positives = 213/450 (47%), Gaps = 46/450 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPL--PNTLIDAYGKCDLVQYAHHLLEEMPQR 67
           +++C      +  K LHA  ++ G H +G +    +L+D Y     V     + E M +R
Sbjct: 62  IKICGSVPDRVLGKQLHALCVRCG-HDHGDIRVGTSLVDMYMNWHSVLDGRKVFEGMLKR 120

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           + V+W S+LT Y QA +    +S+F  M A + + P+ F F+S++    S G   LG+ V
Sbjct: 121 NVVTWTSLLTGYIQAGVLLDVMSLFFRMRA-EGVWPNPFTFSSVLSMVASQGMVDLGQHV 179

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           HA  +    C    V +SL++MYAKCGL   AR VF  ++ ++ VSW  +++    +GR 
Sbjct: 180 HAQSIKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMETRDMVSWNTLMAGLVLNGRD 239

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
            +A+++F  +                                R  + ++     S+++  
Sbjct: 240 LEALQLFHDS--------------------------------RSSITMLTESTYSTVINL 267

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVS 306
           CAN   L L +Q+H  V+  G+ S   +  A++D Y K   +  A D+F  M   ++VVS
Sbjct: 268 CANLKHLGLARQLHSSVLKHGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVS 327

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           WT++I G  Q+G      AL+  M   GV PN++T+  ++     V       ++   +I
Sbjct: 328 WTAMIDGCIQNGDIPLAAALFSRMREDGVAPNDLTYSTILT----VSEASFPPQIHAQVI 383

Query: 367 E-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
           + +Y  TP++   T L+   S+    +EA ++ K M  + D  +W+A+L+ C        
Sbjct: 384 KTNYECTPTVG--TALMVSYSKLCSTEEALSIFK-MIDQKDVVSWSAMLT-CYAQAGDCN 439

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAA 455
           G   A   +++    P+ + + S + A A+
Sbjct: 440 GATNAFIKMTMHGLKPNEFTISSAIDACAS 469



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 158/308 (51%), Gaps = 34/308 (11%)

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           ++K CGS+    LGKQ+HA  V       D+ V +SLVDMY                   
Sbjct: 61  IIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMY------------------- 101

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
             ++W ++L          D  ++FE    RN+  WT+L++G +Q+   +D    F  MR
Sbjct: 102 --MNWHSVL----------DGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMR 149

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289
            EGV   +P   SS++   A+  +++LG+ +H   I  G  S +F+ N++++MYAKC  +
Sbjct: 150 AEGV-WPNPFTFSSVLSMVASQGMVDLGQHVHAQSIKFGCCSTVFVCNSLMNMYAKCGLV 208

Query: 290 IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349
             A+ +F RM  +D+VSW +++ G   +G+  E L L+ +  S+     E T+  +I  C
Sbjct: 209 EEARVVFCRMETRDMVSWNTLMAGLVLNGRDLEALQLFHDSRSSITMLTESTYSTVINLC 268

Query: 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
           +++  +G  R+L  S+++ +G        T L+D  +++G LD+A ++   M    +  +
Sbjct: 269 ANLKHLGLARQLHSSVLK-HGFHSYGNVMTALMDAYNKAGQLDKALDVFLLMSGSQNVVS 327

Query: 410 WAALLSAC 417
           W A++  C
Sbjct: 328 WTAMIDGC 335



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 96/193 (49%), Gaps = 3/193 (1%)

Query: 225 FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE-SCLFISNAIVDMY 283
           F++  R     V    L  I+  C +     LGKQ+H L +  G++   + +  ++VDMY
Sbjct: 42  FLDAHRRQGRCVGGGALLGIIKICGSVPDRVLGKQLHALCVRCGHDHGDIRVGTSLVDMY 101

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
                ++  + +F  M +++VV+WTS++ G  Q G   + ++L+  M + GV PN  TF 
Sbjct: 102 MNWHSVLDGRKVFEGMLKRNVVTWTSLLTGYIQAGVLLDVMSLFFRMRAEGVWPNPFTFS 161

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            ++   +  G+V  G+ +    I+ +G   ++     L+++ ++ G ++EA  +   M  
Sbjct: 162 SVLSMVASQGMVDLGQHVHAQSIK-FGCCSTVFVCNSLMNMYAKCGLVEEARVVFCRMET 220

Query: 404 EPDEPTWAALLSA 416
             D  +W  L++ 
Sbjct: 221 R-DMVSWNTLMAG 232


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 210/583 (36%), Positives = 325/583 (55%), Gaps = 38/583 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH  ++  GL     + N L+  YGK   +  +  +L +MP+RD V+W +++  Y + 
Sbjct: 365 RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAED 424

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKAC---GSLGATRLGKQVHACFVLSPFCDD 139
             P K ++ F TM  ++ +  ++    S++ AC   G L     GK +HA  V + F  D
Sbjct: 425 EDPDKALAAFQTM-RVEGVSSNYITVVSVLSACLLPGDL--LERGKPLHAYIVSAGFESD 481

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
           + VK+SL+ MYAKCG  ++++ +F+ +  +N ++W AML+A A  G  ++ +++  +   
Sbjct: 482 EHVKNSLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSK--- 538

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                       MR  GV + D    S  + A A  AVLE G+Q
Sbjct: 539 ----------------------------MRSFGVSL-DQFSFSEGLSAAAKLAVLEEGQQ 569

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           +HGL + LG+E   FI NA  DMY+KC +I     +      + + SW  +I    +HG 
Sbjct: 570 LHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLPPSVNRSLPSWNILISALGRHGY 629

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
            EE  A + EM+  G+KP  VTFV L+ ACSH GLV KG   +  +  D+G+ P+++H  
Sbjct: 630 FEEVCATFHEMLEMGIKPGHVTFVSLLTACSHGGLVDKGLAYYDMIARDFGLEPAIEHCI 689

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++DLL RSG L EAE  I  MP +P++  W +LL++CK H N + G + A +L  L+PE
Sbjct: 690 CVIDLLGRSGRLAEAETFISKMPMKPNDLVWRSLLASCKIHGNLDRGRKAAENLSKLEPE 749

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
           D S Y+L SN++A+   W+ V  VRK M    +KK+   S+++       F  G+ +HP 
Sbjct: 750 DDSVYVLSSNMFATTGRWEDVENVRKQMGFKNIKKKQACSWVKLKDKVSSFGIGDRTHPQ 809

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
             EI+  L ++   +K  GYV DTS  L D ++++KE  L+ HSERLA+AY L+ +  G+
Sbjct: 810 TMEIYAKLEDIKKLIKESGYVADTSQALQDTDEEQKEHNLWNHSERLALAYALMSTPEGS 869

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
            +R+ KNLR+C DCH V K +SR+  R IV+RD  R+HHF+ G
Sbjct: 870 TVRIFKNLRICSDCHSVYKFVSRVIGRRIVLRDQYRFHHFERG 912



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 105/403 (26%), Positives = 183/403 (45%), Gaps = 36/403 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +  Q++K GL     + N+LI   G    V YA+++ ++M +RD +SW SI  AY Q 
Sbjct: 163 RQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQN 222

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +++  IFS M      + +    ++L+   G +   + G+ +H            VV
Sbjct: 223 GHIEESFRIFSLMRRFHD-EVNSTTVSTLLSVLGHVDHQKWGRGIHGL----------VV 271

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           K     +   C                       +L  YA +GR  +A  +F+Q P ++L
Sbjct: 272 KMGFDSVVCVC---------------------NTLLRMYAGAGRSVEANLVFKQMPTKDL 310

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W +L++  V     +DA      M   G   V+ +  +S + AC      E G+ +HG
Sbjct: 311 ISWNSLMASFVNDGRSLDALGLLCSMISSGKS-VNYVTFTSALAACFTPDFFEKGRILHG 369

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           LV+  G      I NA+V MY K  ++  ++ +  +M R+DVV+W ++I G A+    ++
Sbjct: 370 LVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDK 429

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVG-LVGKGRKLFKSMIEDYGITPSLQHYTCL 381
            LA +  M   GV  N +T V ++ AC   G L+ +G+ L  + I   G          L
Sbjct: 430 ALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPL-HAYIVSAGFESDEHVKNSL 488

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           + + ++ G L  +++L   +    +  TW A+L+A  HH + E
Sbjct: 489 ITMYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHHGHGE 530



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 162/354 (45%), Gaps = 36/354 (10%)

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT-R 122
           MP R+ VSW ++++   +  L  + +  F  M  L  ++P  FV ASLV ACG  G+  R
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLG-IKPSSFVIASLVTACGRSGSMFR 59

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
            G QVH     S    D  V ++++ +Y   GL + +R VF+ +  +N VSWT+++  Y+
Sbjct: 60  EGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYS 119

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
             G  ++ ++I++                                MR EGV   +   +S
Sbjct: 120 DKGEPEEVIDIYKG-------------------------------MRGEGVG-CNENSMS 147

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            ++ +C       LG+QI G V+  G ES L + N+++ M     ++  A  IF +M  +
Sbjct: 148 LVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVDYANYIFDQMSER 207

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           D +SW SI    AQ+G  EE+  ++  M     + N  T   L+    HV     GR + 
Sbjct: 208 DTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGI- 266

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             ++   G    +     LL + + +G   EA  + K MP   D  +W +L+++
Sbjct: 267 HGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMP-TKDLISWNSLMAS 319



 Score =  132 bits (331), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 176/392 (44%), Gaps = 35/392 (8%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  + K GL     +   ++  YG   LV  +  + EEMP R+ VSW S++  Y+    
Sbjct: 64  VHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGE 123

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P++ I I+  M   + +  +    + ++ +CG L    LG+Q+    V S       V++
Sbjct: 124 PEEVIDIYKGMRG-EGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVEN 182

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SL+ M    G  + A  +FD +  ++++S                               
Sbjct: 183 SLISMLGSMGNVDYANYIFDQMSERDTIS------------------------------- 211

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W ++ +   Q+ +  ++F  F  MRR   D V+   +S+++    +    + G+ IHGLV
Sbjct: 212 WNSIAAAYAQNGHIEESFRIFSLMRRFH-DEVNSTTVSTLLSVLGHVDHQKWGRGIHGLV 270

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           + +G++S + + N ++ MYA     + A  +F +M  KD++SW S++      G++ + L
Sbjct: 271 VKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDAL 330

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            L   M+S+G   N VTF   + AC       KGR +   ++   G+  +      L+ +
Sbjct: 331 GLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGR-ILHGLVVVSGLFYNQIIGNALVSM 389

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             + G + E+  ++  MP   D   W AL+  
Sbjct: 390 YGKIGEMSESRRVLLQMP-RRDVVAWNALIGG 420



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 118/233 (50%), Gaps = 4/233 (1%)

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA-NFAVLEL 256
           PVRN   W  ++SG+V+    ++    F +M   G+      V++S+V AC  + ++   
Sbjct: 2   PVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIK-PSSFVIASLVTACGRSGSMFRE 60

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           G Q+HG V   G  S +++S AI+ +Y     +  ++ +F  M  ++VVSWTS++VG + 
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
            G+ EE + +Y  M   GV  NE +   +I +C  +     GR++   +++  G+   L 
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKS-GLESKLA 179

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
               L+ +L   G++D A  +   M  E D  +W ++ +A   + + E   R+
Sbjct: 180 VENSLISMLGSMGNVDYANYIFDQMS-ERDTISWNSIAAAYAQNGHIEESFRI 231


>gi|357501931|ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355496269|gb|AES77472.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 700

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/606 (35%), Positives = 336/606 (55%), Gaps = 38/606 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM----- 64
           L  CA           H  + K GL  +  + ++L+  Y KC  V  A  +LE       
Sbjct: 128 LSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNID 187

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
              D   + S+L A  ++    + + +   M+  + +  D   + S++  CG +    LG
Sbjct: 188 NDNDAFCYNSVLNALVESGRLGEAVEVLGRMVD-EGVVWDSVTYVSVMGLCGQIRDLGLG 246

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
            QVHA  +      D  V S LVDM+ KCG   +AR VFD   L+N              
Sbjct: 247 LQVHAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDG--LQN-------------- 290

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
                          RN+ +WT+L++  +Q+    +       M REG  + +    + +
Sbjct: 291 ---------------RNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGT-MSNEFTFAVL 334

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + A A  A L  G  +H  V  LG ++ + + NA+++MY+KC  I ++ D+F  MR +D+
Sbjct: 335 LNAFAGMAALRHGDLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDI 394

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           ++W ++I G +QHG  ++ L L+ +M+SAG  PN VTFVG++ AC+H+ LV +G      
Sbjct: 395 ITWNAMICGYSQHGLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQ 454

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           +++ + + P L+HYTC++ +L R+G L+EAEN ++    + D   W  LL+AC  HRN  
Sbjct: 455 LMKHFKVEPGLEHYTCVVAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNACNIHRNYN 514

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +GT++A  +L + P D  +Y LLSN+YA A  W  V+ +RK+M    VKKEPG S+IE  
Sbjct: 515 LGTKIAETILQMDPRDMGTYTLLSNMYAKARSWDSVTMIRKMMRERNVKKEPGVSWIEIR 574

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
              H+F +  ++HP   +I+  +  L   +K+ GYVP+  +VLHD+E ++KE  L +HSE
Sbjct: 575 NAVHVFSSDGSNHPECIQIYNKVQLLLEMIKQLGYVPNIEAVLHDVEDEQKESYLNYHSE 634

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           +LA+AYGL+K      +RV+KNLR+C DCH  +K+IS++T R I+VRDA+R+HHF+DG C
Sbjct: 635 KLAIAYGLMKIPSPAPIRVIKNLRICEDCHTAVKLISKVTNRLIIVRDASRFHHFRDGTC 694

Query: 605 SCNDFW 610
           +C D W
Sbjct: 695 TCTDHW 700



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 180/384 (46%), Gaps = 40/384 (10%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N+LI+ Y KC  ++ A +L +EM  R  VS+  ++  Y  +    + + +F  M++    
Sbjct: 59  NSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVS-SLY 117

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           QP+ +VF +++ AC   G    G Q H             VKSSLV MY+KC   + A  
Sbjct: 118 QPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQ 177

Query: 162 VFDS----IKLKN-SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
           V +S    I   N +  + ++L+A   SGR  +A+E+  +                    
Sbjct: 178 VLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEVLGR-------------------- 217

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
                      M  EGV + D +   S++G C     L LG Q+H  ++  G    +F+ 
Sbjct: 218 -----------MVDEGV-VWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVG 265

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
           + +VDM+ KC D+++A+ +F  ++ ++VV WTS++    Q+G+ EETL L   M   G  
Sbjct: 266 SMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTM 325

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
            NE TF  L+ A + +  +  G  L  + +E  GI   +     L+++ S+ G +D + +
Sbjct: 326 SNEFTFAVLLNAFAGMAALRHG-DLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYD 384

Query: 397 LIKAMPFEPDEPTWAALLSACKHH 420
           +   M    D  TW A++     H
Sbjct: 385 VFFDMR-NRDIITWNAMICGYSQH 407



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 46/232 (19%)

Query: 249 ANFAVLELGKQIHGLVIALGYESC--------LFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           AN   L  GK IH  ++     S         +   N+++++Y KCS +  A+ +F  M 
Sbjct: 23  ANTKNLNFGKSIHTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMS 82

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            + VVS+  ++ G    G+  E + L+  MVS+  +PNE  F  ++ AC+H G V +G +
Sbjct: 83  LRSVVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGRVFEGMQ 142

Query: 361 ----LFK-SMIEDYGITPSLQH------------------------------YTCLLDLL 385
               LFK  ++  + +  SL H                              Y  +L+ L
Sbjct: 143 CHGFLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLNAL 202

Query: 386 SRSGHLDEAENLIKAMPFEP---DEPTWAALLSACKHHRNTEMGTRVANHLL 434
             SG L EA  ++  M  E    D  T+ +++  C   R+  +G +V   LL
Sbjct: 203 VESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLL 254


>gi|297804050|ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 595

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/559 (35%), Positives = 325/559 (58%), Gaps = 34/559 (6%)

Query: 54  VQYAHHLLEEMPQRDHVS-WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLV 112
           + YAH +  ++ +  +V  W +++  Y +       +S++  M A   ++PD   +  L+
Sbjct: 69  MSYAHKVFSKIEKPINVFIWNTLIRGYAEIGNSVSAVSLYREMRASGFVEPDTHTYPFLL 128

Query: 113 KACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSV 172
           KA G +   RLG+ +H+  + S F     V++SL+ +YA CG   +A  VFD +  K+ V
Sbjct: 129 KAVGKMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLV 188

Query: 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
           +W ++++ +A +G+ ++A+ ++ +  ++ +                          + +G
Sbjct: 189 AWNSVINGFAENGKPEEALALYTEMDLKGI--------------------------KPDG 222

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
             IV      S++ ACA    L LGK+ H  +I +G    L  SN ++D+YA+C  +  A
Sbjct: 223 FTIV------SLLSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEA 276

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA-GVKPNEVTFVGLIYACSH 351
           K +F  M  K+ VSWTS+IVG A +G  +E + L+  M S  G+ P E+TFVG++YACSH
Sbjct: 277 KTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSH 336

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
            G+V +G + F+ M E+Y I P ++H+ C++DLL+R+G + +A   I  MP +P+   W 
Sbjct: 337 CGMVKEGFEYFRRMSEEYKIEPRIEHFGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWR 396

Query: 412 ALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
            LL AC  H ++++       +L L+P     Y+LLSN+YAS   W  V K+RK M    
Sbjct: 397 TLLGACTVHGDSDLAELARMKILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDG 456

Query: 472 VKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDME 531
           V+K PG+S +E G   H F  G+ SHP  D I+  L E+   ++  GYVP  S+V  D+E
Sbjct: 457 VRKVPGHSLVEVGNRVHEFLMGDKSHPQNDMIYAKLKEMTDRLRLEGYVPQISNVYVDVE 516

Query: 532 QKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVR 591
           ++EKE  L +HSE++A+A+ L+ +     +RVVKNL+VC DCH+ +K++S++  REIVVR
Sbjct: 517 EEEKENALVYHSEKIAIAFMLISTPERWPIRVVKNLKVCADCHLAIKLVSKVYNREIVVR 576

Query: 592 DATRYHHFKDGKCSCNDFW 610
           D +R+HHFK+G CSC D+W
Sbjct: 577 DRSRFHHFKNGSCSCQDYW 595



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 102/174 (58%), Gaps = 1/174 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +T+H+ +I+ G      + N+L+  Y  C  V  A+ + ++MP++D V+W S++  + + 
Sbjct: 141 ETIHSVVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAEN 200

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P++ +++++ M  L  ++PD F   SL+ AC  +GA  LGK+ H   +      +   
Sbjct: 201 GKPEEALALYTEM-DLKGIKPDGFTIVSLLSACAKIGALTLGKRFHVYMIKVGLTRNLHS 259

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
            + L+D+YA+CG    A+ +FD +  KNSVSWT+++   A +G  K+A+E+F+ 
Sbjct: 260 SNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGLGKEAIELFKN 313



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 133/334 (39%), Gaps = 41/334 (12%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA+       K  H  +IK+GL +     N L+D Y +C  V+ A  L +EM  ++ 
Sbjct: 229 LSACAKIGALTLGKRFHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNS 288

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
           VSW S++       L ++ I +F  M + + L P    F  ++ AC   G  + G    +
Sbjct: 289 VSWTSLIVGLAVNGLGKEAIELFKNMESKEGLLPCEITFVGILYACSHCGMVKEGFEYFR 348

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARS 184
           ++   + + P  +       +VD+ A+ G    A      + ++ N V W  +L A    
Sbjct: 349 RMSEEYKIEPRIEH---FGCMVDLLARAGQVKKAYEYILKMPMQPNVVIWRTLLGACTVH 405

Query: 185 GRKKDA----MEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           G    A    M+I +  P  N      L+S +  S           E R   V  +   +
Sbjct: 406 GDSDLAELARMKILQLEP--NHSGDYVLLSNMYAS-----------EQRWSDVQKIRKQM 452

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA--KDIFGR 298
           L   V      +++E+G ++H  ++               D     +D+I A  K++  R
Sbjct: 453 LRDGVRKVPGHSLVEVGNRVHEFLMG--------------DKSHPQNDMIYAKLKEMTDR 498

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           +R +  V   S +    +  + E  L  + E ++
Sbjct: 499 LRLEGYVPQISNVYVDVEEEEKENALVYHSEKIA 532


>gi|357116278|ref|XP_003559909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Brachypodium distachyon]
          Length = 585

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 201/522 (38%), Positives = 309/522 (59%), Gaps = 35/522 (6%)

Query: 123 LGKQVHACFVLSPFCDDDV-VKSSLVDMYAKC---------------------------- 153
           LG  +HA  + S F   D+ V+++LV+MYAK                             
Sbjct: 65  LGASLHARALRSGFAAADLFVRTALVEMYAKTAAGEIALARAAFDEAPRRDVFLCNVMLA 124

Query: 154 -----GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
                G    AR VFD +  ++ VSW  M+  YA  G    A EIF+    R+ F W+++
Sbjct: 125 AYVARGEVAEARKVFDGMSGRDLVSWNTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSM 184

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
           +S   + R   +A   + EMR  GV   D + + S++ AC+    L +G ++H  V +  
Sbjct: 185 ISAYAKGRCSKEALELWREMRVAGV-APDCISMVSVLSACSAMGALAIGAEVHRFVESNR 243

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
            E  + +  A+VDMYAKC DI  +  +F  M  KDV++W+S+I+G A HG   + L+L+ 
Sbjct: 244 VEVDMKLGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFS 303

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
           EM+S G++PNE+TF+G++ AC+HVGLV  G+K F SM + +G+ P ++HY C++DLL R+
Sbjct: 304 EMISQGLQPNEITFIGVLIACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCMVDLLGRA 363

Query: 389 GHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
           GH++EA  LI++M F+PD   W  LL AC+ H+N E+       L  L P     Y+LLS
Sbjct: 364 GHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMAKLKVLDPLADGHYVLLS 423

Query: 449 NVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLT 508
           N+YA A  W+ V+++RK +    +++ PG S IE+    H F +G+ SHP  +EI+++L 
Sbjct: 424 NIYAQANSWEGVAEMRKTIRRENIQRVPGRSSIEWENTVHEFVSGDRSHPRIEEIYKMLE 483

Query: 509 ELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLR 568
           E+   +++ GY P TS VL D++++ K+R L  HSE+LA+A+GLL +   + LR+ KNLR
Sbjct: 484 EMMDRLRQAGYRPMTSLVLQDIDEQSKKRALAEHSEKLAIAFGLLVTPARSTLRITKNLR 543

Query: 569 VCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            C DCH  +K+IS    R+++VRD  R+HHF +G+CSC D+W
Sbjct: 544 ACEDCHSAIKLISLAYDRKLIVRDRNRFHHFSEGQCSCKDYW 585



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 140/296 (47%), Gaps = 52/296 (17%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT+I  Y     V  A  + +    RD  SW+S+++AY +    ++ + ++  M  +  +
Sbjct: 151 NTMIHGYAVRGDVGMAREIFDGTRDRDAFSWSSMISAYAKGRCSKEALELWREM-RVAGV 209

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNAR 160
            PD     S++ AC ++GA  +G +VH  FV S   + D+ + ++LVDMYAKCG   N+ 
Sbjct: 210 APDCISMVSVLSACSAMGALAIGAEVHR-FVESNRVEVDMKLGTALVDMYAKCGDIENSL 268

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            VF ++ +K+ ++W++M+   A  G   DA+ +F +           ++S  +Q  NEI 
Sbjct: 269 KVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSE-----------MISQGLQP-NEI- 315

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ-------IHGLVIALGYESCL 273
              +FI     GV I           AC +  ++  GK+       +HG+V  + +  C+
Sbjct: 316 ---TFI-----GVLI-----------ACTHVGLVNDGKKYFSSMSDVHGVVPRMEHYGCM 356

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRK-DVVSWTSIIVGTAQHGQ---AEETLA 325
                 VD+  +   +  A ++   M  K D + W +++     H     AEE +A
Sbjct: 357 ------VDLLGRAGHVEEAMELIRSMTFKPDPIIWRTLLGACRIHKNVEIAEEAMA 406



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 17/165 (10%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   L+D Y KC  ++ +  +   MP +D ++W+S++       L    +S+FS M++  
Sbjct: 250 LGTALVDMYAKCGDIENSLKVFHAMPVKDVLTWSSMIIGLANHGLGHDALSLFSEMIS-Q 308

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV------KSSLVDMYAKC 153
            LQP+   F  ++ AC  +G    GK+       S   D   V         +VD+  + 
Sbjct: 309 GLQPNEITFIGVLIACTHVGLVNDGKK-----YFSSMSDVHGVVPRMEHYGCMVDLLGRA 363

Query: 154 GLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKKDAMEIFEQA 197
           G    A  +  S+  K + + W  +L A     R    +EI E+A
Sbjct: 364 GHVEEAMELIRSMTFKPDPIIWRTLLGAC----RIHKNVEIAEEA 404


>gi|297745783|emb|CBI15839.3| unnamed protein product [Vitis vinifera]
          Length = 505

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/524 (38%), Positives = 306/524 (58%), Gaps = 35/524 (6%)

Query: 89  ISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVD 148
           +  +S ML  D L P    F+ ++++C   G  +LG+  H   +   F  D ++++ L+D
Sbjct: 15  LGFYSGMLRNDVL-PSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLD 73

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL--FLWT 206
            YAK                                G  ++A  +F+    RN     W 
Sbjct: 74  FYAK-------------------------------HGYVEEARNLFDNMTERNSNSVTWN 102

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
            ++S  VQ      A   F +M+ E V   + + + S++ ACA+   L++G+ IHG +  
Sbjct: 103 TMISAYVQCGEFGTAISMFQQMQSENVKPTE-VTMVSLLSACAHLGALDMGEWIHGYIRT 161

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
              +  + + NA++DMY KC  + AA D+F  + RK++  W SIIVG   +G+ EE +A 
Sbjct: 162 KRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAA 221

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
           +  M   G+KP+ VTFVG++  CSH GL+  G++ F  M+  YG+ P ++HY C++DLL 
Sbjct: 222 FIVMEKEGIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEHYGCMVDLLG 281

Query: 387 RSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYIL 446
           R+G+L EA  LI+AMP +P+     +LL AC+ H++T++G +V   LL L P D  +Y+ 
Sbjct: 282 RAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGEQVTQQLLELDPCDGGNYVF 341

Query: 447 LSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFEL 506
           LSN+YAS + W  V+  RKLM    V K PG S IE     H F AG+TSHP   +I   
Sbjct: 342 LSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEVNNIVHEFVAGDTSHPQFTQINAF 401

Query: 507 LTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKN 566
           L E+  E+K +G+VP+T++VLHD+E++EKE  + +HSER+AVA+GL+ + PG  +RVVKN
Sbjct: 402 LDEIAKELKGQGHVPNTANVLHDIEEEEKEGAIRYHSERIAVAFGLMSTPPGKTIRVVKN 461

Query: 567 LRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           LR C DCH  MK+IS   KREI+VRD  R+HHF++G CSCND+W
Sbjct: 462 LRTCSDCHSAMKLISNAFKREIIVRDRKRFHHFRNGSCSCNDYW 505



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 3/187 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR CA    A   +  H QI+K+G      L   L+D Y K   V+ A +L + M +R+ 
Sbjct: 37  LRSCAISGEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNS 96

Query: 70  --VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
             V+W ++++AY Q       IS+F  M + + ++P      SL+ AC  LGA  +G+ +
Sbjct: 97  NSVTWNTMISAYVQCGEFGTAISMFQQMQS-ENVKPTEVTMVSLLSACAHLGALDMGEWI 155

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           H          D V+ ++L+DMY KCG    A  VF  +  KN   W +++     +GR 
Sbjct: 156 HGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRG 215

Query: 188 KDAMEIF 194
           ++A+  F
Sbjct: 216 EEAIAAF 222



 Score = 42.4 bits (98), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 32/146 (21%), Positives = 63/146 (43%), Gaps = 9/146 (6%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L N LID Y KC  ++ A  +   + +++   W SI+         ++ I+ F  M   +
Sbjct: 170 LGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWNSIIVGLGMNGRGEEAIAAFIVM-EKE 228

Query: 100 KLQPDHFVFASLVKACGSLGATRLGK----QVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
            ++PD   F  ++  C   G    G+    ++   + L P  +       +VD+  + G 
Sbjct: 229 GIKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLGVYGLEPGVEH---YGCMVDLLGRAGY 285

Query: 156 PNNARAVFDSIKLK-NSVSWTAMLSA 180
              A  +  ++ +K NS+   ++L A
Sbjct: 286 LKEALELIRAMPMKPNSMVLGSLLRA 311



 Score = 41.2 bits (95), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 70/155 (45%), Gaps = 13/155 (8%)

Query: 286 CSDIIAAKDIFGRMRRKDVV----SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           C D +     +  M R DV+    S++ I+   A  G+A+   A + +++  G + + + 
Sbjct: 11  CPDFLG---FYSGMLRNDVLPSKTSFSLILRSCAISGEAQLGEAFHCQIMKMGFEYDMIL 67

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
             GL+   +  G V + R LF +M E    + +   +  ++    + G    A ++ + M
Sbjct: 68  QTGLLDFYAKHGYVEEARNLFDNMTERNSNSVT---WNTMISAYVQCGEFGTAISMFQQM 124

Query: 402 PFE---PDEPTWAALLSACKHHRNTEMGTRVANHL 433
             E   P E T  +LLSAC H    +MG  +  ++
Sbjct: 125 QSENVKPTEVTMVSLLSACAHLGALDMGEWIHGYI 159


>gi|357125908|ref|XP_003564631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Brachypodium distachyon]
          Length = 647

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 205/570 (35%), Positives = 316/570 (55%), Gaps = 35/570 (6%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N LI    K   +  A  L ++MP R+  +W +++       L + ++  F  M   + +
Sbjct: 112 NILIGGCIKNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDEDSLQFFLAMRR-EGM 170

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            PD F   S+ + C  L     G+QVHA  V S    D  V +SL  MY +CG      A
Sbjct: 171 HPDEFGLGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEA 230

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           V  ++     VS+   ++   ++G  + A+E F                           
Sbjct: 231 VLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSM------------------------- 265

Query: 222 FYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
                 MR  GV++  D +   S +  C++ A L  G+Q+H  VI  G +  + +  ++V
Sbjct: 266 ------MR--GVEVAPDVVTFVSAISCCSDLAALAQGQQVHAQVIKAGVDKVVPVITSLV 317

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
            MY++C  +  ++ ++      D+   +++I     HGQ  + + L+ +M++ G +PNEV
Sbjct: 318 HMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAEPNEV 377

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           TF+ L+YACSH GL  +G + F+ M + YG  PS++HY C++DLL RSG LDEAE LI +
Sbjct: 378 TFLALLYACSHSGLKDEGLEFFELMTKTYGFQPSVKHYNCIVDLLGRSGCLDEAEALILS 437

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHV 460
           MP   D   W  LLSACK  +N +M  R+A  ++   P D + Y+LLSN+ A++  W  V
Sbjct: 438 MPVRADGVIWKTLLSACKTQKNFDMAERIAERVIESDPRDSAPYVLLSNIRATSKRWGDV 497

Query: 461 SKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYV 520
           ++VRK+M   +++KEPG S++E     H F  G+ SHP + EI E L E+  ++++ GY 
Sbjct: 498 TEVRKIMREKDIRKEPGVSWVEHKGQVHQFCTGDKSHPRQGEIDEYLKEMMGKIRQCGYA 557

Query: 521 PDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMI 580
           PD + V HDME +EKE  L  HSE+LA+A+  L    G  +RV+KNLRVC DCH+ +K+I
Sbjct: 558 PDMTMVFHDMEDEEKEVSLTHHSEKLAIAFAFLNLPEGVPIRVMKNLRVCDDCHVAIKLI 617

Query: 581 SRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           S++T REIVVRD +R+HHF+DG+CSC D+W
Sbjct: 618 SQVTGREIVVRDVSRFHHFRDGRCSCGDYW 647



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 171/354 (48%), Gaps = 7/354 (1%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           L  D  +F+ + +AC    A  L +Q+HA    S    D    ++L+  YA  G    AR
Sbjct: 41  LWSDASLFSHIFRACR---AIPLLRQLHAFAATSGAAADRFTTNNLLLAYADLGDLPTAR 97

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            +F+ I  +N +SW  ++    ++G    A E+F++ P RN+  W A+V+GL     + D
Sbjct: 98  HLFEGISKRNVMSWNILIGGCIKNGDLGSARELFDKMPTRNVATWNAMVAGLTNVGLDED 157

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
           +   F+ MRREG+   D   L S+   CA    +  G+Q+H  V+  G +S + + N++ 
Sbjct: 158 SLQFFLAMRREGMH-PDEFGLGSVFRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLA 216

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
            MY +C  +   + +   +    +VS+ + I G  Q+G +E  L  +  M    V P+ V
Sbjct: 217 HMYMRCGCLAEGEAVLRALPSLTIVSFNTTIAGRTQNGDSEGALEYFSMMRGVEVAPDVV 276

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
           TFV  I  CS +  + +G+++   +I+  G+   +   T L+ + SR G L ++E +   
Sbjct: 277 TFVSAISCCSDLAALAQGQQVHAQVIK-AGVDKVVPVITSLVHMYSRCGCLGDSERVYDG 335

Query: 401 MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454
                D    +A++SAC  H        +   +++   E P+    L+ +YA +
Sbjct: 336 Y-CGLDLFLLSAMISACGFHGQGHKAVELFKQMMNGGAE-PNEVTFLALLYACS 387



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 88/187 (47%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            R CA     ++ + +HA +++ G+     + N+L   Y +C  +     +L  +P    
Sbjct: 181 FRCCAGLLDVVSGRQVHAYVVRSGMDSDMCVGNSLAHMYMRCGCLAEGEAVLRALPSLTI 240

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS+ + +    Q    +  +  FS M  ++ + PD   F S +  C  L A   G+QVHA
Sbjct: 241 VSFNTTIAGRTQNGDSEGALEYFSMMRGVE-VAPDVVTFVSAISCCSDLAALAQGQQVHA 299

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +       V +SLV MY++CG   ++  V+D     +    +AM+SA    G+   
Sbjct: 300 QVIKAGVDKVVPVITSLVHMYSRCGCLGDSERVYDGYCGLDLFLLSAMISACGFHGQGHK 359

Query: 190 AMEIFEQ 196
           A+E+F+Q
Sbjct: 360 AVELFKQ 366


>gi|297816218|ref|XP_002875992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321830|gb|EFH52251.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 721

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/595 (36%), Positives = 330/595 (55%), Gaps = 36/595 (6%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ-RDHVSWASILTAYN 80
           +K LH   +  G   Y  + N  +  Y K  L++ A  +   M   RD VSW S++ AY 
Sbjct: 157 IKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLRDEVSWNSMIVAYG 216

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           Q     K ++++  M+     + D F  AS++ A  SL     G+Q H   + + F  + 
Sbjct: 217 QHKEGAKALALYKEMI-FKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNS 275

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V S L+D Y+KCG                            R G   D+ ++F++    
Sbjct: 276 HVGSGLIDFYSKCG---------------------------GRDGMS-DSEKVFQEILSP 307

Query: 201 NLFLWTALVSGL-VQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
           +L LW  ++SG  +   +  +A  SF +M+R G    D      +  AC+N +    GKQ
Sbjct: 308 DLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIG-HRPDDCSFVCVTSACSNLSSPSQGKQ 366

Query: 260 IHGLVIALGYESC-LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           IHGL I     S  + ++NA++ +Y K  +++ A+ +F RM   + VS+  +I G AQHG
Sbjct: 367 IHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMPELNAVSFNCMIKGYAQHG 426

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
              E L LY  M+ +G+ PN +TFV ++ AC+H G V +G+K F +M E + I P  +HY
Sbjct: 427 HGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQKYFNTMKETFKIEPEAEHY 486

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
           +C++DLL R+G L+EAE  I AMP++P    WAALL AC+ H+N  +  R A  L+ ++P
Sbjct: 487 SCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAAKELMVMQP 546

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
              + Y++L+N+YA A  W+ ++ VRK M    ++K+PG S+IE  K  H+F A + SHP
Sbjct: 547 LAATPYVMLANMYADAGKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHP 606

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVL---HDMEQKEKERQLFWHSERLAVAYGLLKS 555
           +  E+ E L E+  +MK+ GYV D    +    +  + E+E +L  HSE+LAVA+GL+ +
Sbjct: 607 MIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGEEEMRLGHHSEKLAVAFGLMST 666

Query: 556 VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             G  + VVKNLR+CGDCH  +K +S +  REI+VRD  R+H FKDGKCSC D+W
Sbjct: 667 RDGEEIVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 171/369 (46%), Gaps = 45/369 (12%)

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           GK +HA +V S       + +  V++Y+KCG  + ARA FDS +  N  S+  ++ AYA+
Sbjct: 27  GKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKAYAK 86

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
             +   A ++F++ P  +   +  L+SG   +R  + A   F  MR  G + VD   LS 
Sbjct: 87  DSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELGFE-VDGFTLSG 145

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF-GRMRRK 302
           ++ AC +   ++L KQ+H   ++ G++S   ++NA V  Y+K   +  A  +F G    +
Sbjct: 146 LIAACCD--RVDLIKQLHCFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDGLR 203

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           D VSW S+IV   QH +  + LALY EM+  G K +  T   ++ A + +  +  GR+  
Sbjct: 204 DEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFH 263

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSG--------------------------------- 389
             +I+  G   +    + L+D  S+ G                                 
Sbjct: 264 GKLIKA-GFHQNSHVGSGLIDFYSKCGGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMN 322

Query: 390 --HLDEAENLIKAMP---FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
             H +EA    + M      PD+ ++  + SAC +  +   G ++  H L++K   PS+ 
Sbjct: 323 EEHSEEAVKSFRQMQRIGHRPDDCSFVCVTSACSNLSSPSQGKQI--HGLAIKSNIPSNR 380

Query: 445 ILLSNVYAS 453
           I ++N   S
Sbjct: 381 ISVNNALIS 389



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 117/494 (23%), Positives = 201/494 (40%), Gaps = 110/494 (22%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQY----------------------- 56
            T K+LHA  +K  +     L N  ++ Y KC  + Y                       
Sbjct: 25  FTGKSLHALYVKSIVASSTYLSNHFVNLYSKCGCLSYARAAFDSTEEPNVFSYNVIVKAY 84

Query: 57  --------AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVF 108
                   A  L +E PQ D VS+ ++++ Y  A      + +F  M  L   + D F  
Sbjct: 85  AKDSKIHIARQLFDENPQPDTVSYNTLISGYADARETVAAMVLFKRMRELG-FEVDGFTL 143

Query: 109 ASLVKACGSLGATRLGKQVHACFVLSPFCDD-DVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           + L+ AC       L KQ+H CF +S   D    V ++ V  Y+K GL   A +VF  + 
Sbjct: 144 SGLIAAC--CDRVDLIKQLH-CFAVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMD 200

Query: 168 -LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
            L++ VSW +M+ AY +      A+ +++                               
Sbjct: 201 GLRDEVSWNSMIVAYGQHKEGAKALALYK------------------------------- 229

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           EM  +G  I D   L+S++ A  +   L  G+Q HG +I  G+     + + ++D Y+KC
Sbjct: 230 EMIFKGFKI-DMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGLIDFYSKC 288

Query: 287 SDIIAAKD---IFGRMRRKDVVSWTSIIVGTAQHGQ-AEETLALYDEMVSAGVKPNEVTF 342
                  D   +F  +   D+V W ++I G + + + +EE +  + +M   G +P++ +F
Sbjct: 289 GGRDGMSDSEKVFQEILSPDLVLWNTMISGYSMNEEHSEEAVKSFRQMQRIGHRPDDCSF 348

Query: 343 VGLIYACSHVGLVGKGRKL----FKSMIEDYGIT-------------------------P 373
           V +  ACS++    +G+++     KS I    I+                         P
Sbjct: 349 VCVTSACSNLSSPSQGKQIHGLAIKSNIPSNRISVNNALISLYYKSGNLLDARRVFDRMP 408

Query: 374 SLQ--HYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTR 428
            L    + C++   ++ GH  EA  L + M      P+  T+ A+LSAC H    + G +
Sbjct: 409 ELNAVSFNCMIKGYAQHGHGTEALRLYQRMLDSGIAPNNITFVAILSACAHCGKVDEGQK 468

Query: 429 VANHL---LSLKPE 439
             N +     ++PE
Sbjct: 469 YFNTMKETFKIEPE 482


>gi|224060371|ref|XP_002300166.1| predicted protein [Populus trichocarpa]
 gi|222847424|gb|EEE84971.1| predicted protein [Populus trichocarpa]
          Length = 719

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 223/627 (35%), Positives = 331/627 (52%), Gaps = 38/627 (6%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           L +  +HAQII   L     +   LI +      + ++  +      ++  ++ +++   
Sbjct: 95  LQLHQIHAQIIIHNLSSSSLITTQLISSSSLRKSINHSLAVFNHHKPKNLFTFNALIRGL 154

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
              +     I  F  ML    ++PD   +  ++K+   L +T LG  +H   +      D
Sbjct: 155 TTNSHFFNAIFHFRLMLR-SGIKPDRLTYPFVLKSMAGLFSTELGMAIHCMILRCGIELD 213

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFD------------------------------SIKL- 168
             V+ SLVDMY K     +A  VFD                              ++KL 
Sbjct: 214 SFVRVSLVDMYVKVEKLGSAFKVFDESPERFDSGSSALLWNVLIKGCCKAGSMKKAVKLF 273

Query: 169 -----KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
                K +VSW+ ++  +A++G    AME+F+Q P +N+  WT +V G  ++ +   A  
Sbjct: 274 KAMPKKENVSWSTLIDGFAKNGDMDRAMELFDQMPEKNVVSWTTMVDGFSRNGDSEKALS 333

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            F +M  EGV   +   + S + ACA    LE G +IH  +   G      +  A+VDMY
Sbjct: 334 MFSKMLEEGVR-PNAFTIVSALSACAKIGGLEAGLRIHKYIKDNGLHLTEALGTALVDMY 392

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           AKC +I +A ++FG   +K + +WT +I G A HG +E+ +A + +M+ AG+KP+EV F+
Sbjct: 393 AKCGNIESASEVFGETEQKSIRTWTVMIWGWAIHGHSEQAIACFKQMMFAGIKPDEVVFL 452

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            L+ AC H G V  G   F SM  DY I PS++HYT ++D+L RSG L EA   I+ MP 
Sbjct: 453 ALLTACMHSGQVDIGLNFFDSMRLDYCIEPSMKHYTLIVDMLGRSGQLKEALRFIERMPM 512

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
            PD   W AL  AC+ H+ T+M     N LL L+P    +YI LSN YA+   W+   +V
Sbjct: 513 NPDFVIWGALFCACRAHKKTKMAKFALNKLLKLEPTHTGNYIFLSNAYAALGQWEDAERV 572

Query: 464 RKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDT 523
           R LM    V K  G+S IE     H F +G+  H     I   L E+ A   ++GY+P T
Sbjct: 573 RVLMQNRGVHKNSGWSCIEVEGQVHRFVSGDHDHKDSKAICLKLEEIMAGAVKQGYIPGT 632

Query: 524 SSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRI 583
             VLH+MEQ+EKE  L  H E+LA+A+ L+ + PG  +R+VKNL+VCGDCH +MK  S+I
Sbjct: 633 EWVLHNMEQEEKEDVLGSHGEKLALAFALICTSPGMTIRIVKNLQVCGDCHSLMKYASKI 692

Query: 584 TKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++REI++RD  R+HHFKDG CSC D W
Sbjct: 693 SQREIMLRDMKRFHHFKDGSCSCRDHW 719


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/592 (36%), Positives = 328/592 (55%), Gaps = 33/592 (5%)

Query: 19  ALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           A+  K +H   +K        +   L+D Y KC  ++ A  + E +P  D + W+ +++ 
Sbjct: 267 AVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISR 326

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
           Y Q+   ++   +F  M+    + P+ F  + +++AC ++    LG+Q+H   +   +  
Sbjct: 327 YAQSYQNEQAFEMFLRMMR-SSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYES 385

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           +  V ++L+D+YAKC              ++NS                   +EIF    
Sbjct: 386 ELFVGNALMDVYAKCR------------NMENS-------------------LEIFRSLR 414

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
             N   W  ++ G  QS    DA   F EMR   V +   +  SS++ ACAN A ++   
Sbjct: 415 DANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHV-LSTQVTFSSVLRACANTASIKHTV 473

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           QIH L+    + +   + N+++D YAKC  I  A  +F  + + DVVSW +II G A HG
Sbjct: 474 QIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHG 533

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
           +A + L L++ M  +  KPN+VTFV L+  C   GLV +G  LF SM  D+ I PS+ HY
Sbjct: 534 RATDALELFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHY 593

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
           TC++ LL R+G L++A   I  +P  P    W ALLS+C  H+N  +G   A  +L ++P
Sbjct: 594 TCIVRLLGRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEP 653

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
           +D ++Y+LLSN+YA+A +   V+ +RK M  + VKKE G S++E     H F  G   HP
Sbjct: 654 QDETTYVLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWVEIKGEVHAFSVGSADHP 713

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
               I  +L  L+ +  R GYVPD + VLHD++++EK R L+ HSERLA+AYGL  + PG
Sbjct: 714 DMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPG 773

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             +R++KNLR C DCH V K+IS+I +REIVVRD  R+HHF +G CSC D+W
Sbjct: 774 HPIRIMKNLRSCLDCHTVFKVISKIVQREIVVRDINRFHHFDEGICSCGDYW 825



 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 137/440 (31%), Positives = 230/440 (52%), Gaps = 39/440 (8%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA   KLG  +   + ++LIDAY  C  V +A  + + +  +D V+W ++++ Y++ ++
Sbjct: 172 IHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDI 231

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VK 143
           P+  ++ FS M  +   +P+ FV  S++KA   L +  LGK +H C V    CD +  V 
Sbjct: 232 PEDALNTFSKM-RMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGCAV-KTLCDTEPHVG 289

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
            +L+DMYAKCG   +AR VF+ I   + + W+ ++S YA+S + + A E+          
Sbjct: 290 GALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEM---------- 339

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
                                F+ M R  V + +   LS ++ ACAN A L+LG+QIH L
Sbjct: 340 ---------------------FLRMMRSSV-VPNEFSLSGVLQACANVAFLDLGQQIHNL 377

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           VI LGYES LF+ NA++D+YAKC ++  + +IF  +R  + VSW +IIVG  Q G AE+ 
Sbjct: 378 VIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDA 437

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           L+++ EM +A V   +VTF  ++ AC++   + K      S+IE             L+D
Sbjct: 438 LSVFQEMRAAHVLSTQVTFSSVLRACANTASI-KHTVQIHSLIEKSTFNNDTIVCNSLID 496

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL--LSLKPEDP 441
             ++ G + +A  + +++  + D  +W A++S    H        + N +     KP D 
Sbjct: 497 TYAKCGCIRDALKVFESI-IQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDV 555

Query: 442 SSYILLSNVYASAAMWQHVS 461
           +   LLS   ++  + Q +S
Sbjct: 556 TFVALLSVCGSTGLVNQGLS 575



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 198/407 (48%), Gaps = 37/407 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLG-LHQYGPL-PNTLIDAYGKCDLVQYAHHLLEEMPQR 67
           L+ C     A   + +HA++++ G + Q      N L++ Y K   +  A  L + MP+R
Sbjct: 54  LQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPER 113

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           + VS+ +++  Y      ++   +F   L  +  + +HFV  +++K   ++ A  L   +
Sbjct: 114 NMVSFVTLVQGYALRGGFEEAAGLFRR-LQREGHEVNHFVLTTILKVLVAMDAPGLTCCI 172

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           HAC        +  V SSL+D Y+ CG  ++AR VFD I  K++V+WTAM+S Y+ +   
Sbjct: 173 HACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIP 232

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
           +DA+  F +                               MR  G    +P VL+S++ A
Sbjct: 233 EDALNTFSK-------------------------------MRMAGAK-PNPFVLTSVLKA 260

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
               +   LGK IHG  +    ++   +  A++DMYAKC  I  A+ +F  +   DV+ W
Sbjct: 261 AVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILW 320

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           + +I   AQ  Q E+   ++  M+ + V PNE +  G++ AC++V  +  G+++   +I+
Sbjct: 321 SFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIK 380

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
             G    L     L+D+ ++  +++ +  + +++  + +E +W  ++
Sbjct: 381 -LGYESELFVGNALMDVYAKCRNMENSLEIFRSLR-DANEVSWNTII 425



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA        + +H  +IKLG      + N L+D Y KC  ++ +  +   +   + 
Sbjct: 359 LQACANVAFLDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANE 418

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +I+  Y Q+   +  +S+F  M A   L      F+S+++AC +  + +   Q+H+
Sbjct: 419 VSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLST-QVTFSSVLRACANTASIKHTVQIHS 477

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               S F +D +V +SL+D YAKCG   +A  VF+SI   + VSW A++S YA  GR  D
Sbjct: 478 LIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATD 537

Query: 190 AMEIFEQ 196
           A+E+F +
Sbjct: 538 ALELFNR 544



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 169/362 (46%), Gaps = 66/362 (18%)

Query: 75  ILTAYNQANLP-QKTISIFSTM---------LALDKLQPDHFVFASLVKACGSLGATRLG 124
           +L  ++Q N+P ++ ++  + +         LAL KL  D +  A L++ C + G  R G
Sbjct: 9   LLPTFSQPNVPLRRNLAANAALQWLDDELASLALPKL--DSYACARLLQRCIARGDARAG 66

Query: 125 KQVHACFV-------LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAM 177
           + VHA  V       L  FC      + L+++YAK G    AR +FD +  +N VS+  +
Sbjct: 67  RAVHARVVQRGGVAQLDTFC-----ANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTL 121

Query: 178 LSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD 237
           +  YA  G        FE+A            +GL            F  ++REG + V+
Sbjct: 122 VQGYALRGG-------FEEA------------AGL------------FRRLQREGHE-VN 149

Query: 238 PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297
             VL++I+          L   IH     LG++   F+ ++++D Y+ C  +  A+ +F 
Sbjct: 150 HFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFD 209

Query: 298 RMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA--CSHVGLV 355
            +  KD V+WT+++   +++   E+ L  + +M  AG KPN      ++ A  C    ++
Sbjct: 210 GIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVL 269

Query: 356 GKGRK--LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
           GKG      K++ +     P +     LLD+ ++ G++++A  + + +P + D   W+ L
Sbjct: 270 GKGIHGCAVKTLCD---TEPHVG--GALLDMYAKCGYIEDARTVFEIIPHD-DVILWSFL 323

Query: 414 LS 415
           +S
Sbjct: 324 IS 325



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 50/214 (23%), Positives = 86/214 (40%), Gaps = 42/214 (19%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR CA          +H+ I K   +    + N+LID Y KC  ++ A  + E + Q D 
Sbjct: 460 LRACANTASIKHTVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDV 519

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +I++ Y         + +F+ M   D  +P+   F +L+  CGS            
Sbjct: 520 VSWNAIISGYALHGRATDALELFNRMNKSDT-KPNDVTFVALLSVCGST----------- 567

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-----WTAMLSAYARS 184
                                   GL N   ++F+S+ + + +      +T ++    R+
Sbjct: 568 ------------------------GLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRA 603

Query: 185 GRKKDAMEIFEQAP-VRNLFLWTALVSGLVQSRN 217
           GR  DA++     P   +  +W AL+S  V  +N
Sbjct: 604 GRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKN 637


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/624 (34%), Positives = 337/624 (54%), Gaps = 37/624 (5%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           ++ +H Q+ +  +     +    I +    + V YA  + +    ++   + +++    +
Sbjct: 58  LRQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAE 117

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
            +  + +IS F  ML   K+ PD   F  ++K+  +L    +G+ +H   +      D  
Sbjct: 118 NSRFESSISFFVLMLKW-KISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSF 176

Query: 142 VKSSLVDMYAK---------------------------------CGLPNNARA--VFDSI 166
           V+ SLVDMY K                                 C + +  +A  +FDS+
Sbjct: 177 VRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSM 236

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
             K++ SW ++++ + + G    A E+F + P +N+  WT +V+G  Q+ +   A  +F 
Sbjct: 237 PKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFF 296

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            M  EG    D  ++S++  ACA    L+ G +IH  +   G++  L I  A+VDMYAKC
Sbjct: 297 CMLEEGARPNDYTIVSAL-SACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAKC 355

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
            +I  A+ +F   + K ++ W+ +I G A HG   + L  ++ M   G KP+ V F+ ++
Sbjct: 356 GNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAVL 415

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            ACSH G V +G K F +M   Y I PS++HYT ++D+L R+G LDEA   I+AMP  PD
Sbjct: 416 NACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITPD 475

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKL 466
              W AL  AC+ H+N EM    +  LL L+P+ P SY+ LSN YAS   W    +VR  
Sbjct: 476 FVVWGALFCACRTHKNVEMAELASKKLLQLEPKHPGSYVFLSNAYASVGRWDDAERVRVS 535

Query: 467 MSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSV 526
           M      K+PG+S+IE     H F AG+ +H    EI+  L E+ A  + +GY  +   V
Sbjct: 536 MRDHGAHKDPGWSFIEVDHKLHRFVAGDNTHNRAVEIYSKLDEISASAREKGYTKEIECV 595

Query: 527 LHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKR 586
           LH++E++EKE  L +HSE+LA+A+G++ + PGT +R+VKNLRVC DCH  MK  S+++KR
Sbjct: 596 LHNIEEEEKEEALGYHSEKLALAFGIVSTRPGTTVRIVKNLRVCVDCHSFMKYASKMSKR 655

Query: 587 EIVVRDATRYHHFKDGKCSCNDFW 610
           EI++RD  R+HHF DG CSC D+W
Sbjct: 656 EIILRDMKRFHHFNDGVCSCGDYW 679


>gi|297839333|ref|XP_002887548.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297333389|gb|EFH63807.1| hypothetical protein ARALYDRAFT_339650 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1221

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/621 (35%), Positives = 340/621 (54%), Gaps = 38/621 (6%)

Query: 25  LHAQIIKLGLHQYGPLPNTLI--DAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +H   IK G+         LI   A    D + YA  LL   P+ D   + +++  Y+++
Sbjct: 191 IHGFFIKSGVDTDSYFIGKLILHCAISISDALPYARRLLLCFPEPDAFMFNTLVRGYSES 250

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV- 141
           + P  ++++F  M+    + PD F FA +VKA  +  + R G Q+H C  L    D  + 
Sbjct: 251 DEPHNSVAVFVEMMRKGFIFPDSFSFAFVVKAAANFRSLRTGFQMH-CQALKHGLDSHLF 309

Query: 142 VKSSLVDMYAKCGL-------------PN------------------NARAVFDSIKLKN 170
           V ++L+ MY +CG              PN                   AR +FD + ++N
Sbjct: 310 VATTLIGMYGECGCVGFARKVFDEMPQPNLVAWNAVVTACFRGNDVSGAREIFDKMLVRN 369

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
             SW  ML+ Y ++G  + A  IF + P R+   W+ ++ G   + +  ++F  F E+ R
Sbjct: 370 HTSWNVMLAGYIKAGELECAKRIFSEMPHRDDVSWSTMIVGFSHNGSFNESFSYFRELLR 429

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290
             +   + + L+ ++ AC+     E GK +HG V   GY   + ++NA++DMY++C ++ 
Sbjct: 430 AEMR-PNEVSLTGVLSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVP 488

Query: 291 AAKDIF-GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349
            A+ +F G   ++ +VSWTS+I G A HG  EE + +++EM  +GV P+E++F+ L+YAC
Sbjct: 489 MARLVFEGMQEKRSIVSWTSMIAGLAMHGHGEEAIRIFNEMTESGVMPDEISFISLLYAC 548

Query: 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
           SH GL+ +G   F  M   Y I P+++HY C++DL  RSG L +A + I  MP  P    
Sbjct: 549 SHAGLIKEGEGYFSKMKRVYHIEPAVEHYGCMVDLYGRSGKLQKAYSFICQMPIPPTAIV 608

Query: 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469
           W  LL AC  H N E+  +V   L  L P +    +LLSNVYA+A  W+ V+ +RK M V
Sbjct: 609 WRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNVYATAGKWKDVASIRKSMIV 668

Query: 470 MEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK-RRGYVPDTSSVLH 528
             +KK   +S +E GK  + F A E    +  E  E L E+   ++   GY P+ +S L+
Sbjct: 669 QRIKKITAWSLVEVGKTMYKFTACEKKKEIDIEAHEKLKEIILRLRDEAGYAPEVASALY 728

Query: 529 DMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREI 588
           D+E++EKE Q+  HSE+LA+A+ L +   G  +R+VKNLR+C DCH VMK+ SR+   EI
Sbjct: 729 DVEEEEKEDQVSKHSEKLALAFALARLPKGANIRIVKNLRICRDCHAVMKLTSRVYGVEI 788

Query: 589 VVRDATRYHHFKDGKCSCNDF 609
           V+RD  R+H FKDG CSC D+
Sbjct: 789 VIRDRNRFHSFKDGSCSCGDY 809



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/197 (25%), Positives = 83/197 (42%), Gaps = 14/197 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ-RD 68
           L  C++       KTLH  + K G      + N LID Y +C  V  A  + E M + R 
Sbjct: 443 LSACSQSGAFEFGKTLHGFVEKSGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQEKRS 502

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK--- 125
            VSW S++         ++ I IF+ M     + PD   F SL+ AC   G  + G+   
Sbjct: 503 IVSWTSMIAGLAMHGHGEEAIRIFNEMTE-SGVMPDEISFISLLYACSHAGLIKEGEGYF 561

Query: 126 -QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYAR 183
            ++   + + P  +       +VD+Y + G    A +    + +   ++ W  +L A + 
Sbjct: 562 SKMKRVYHIEPAVEH---YGCMVDLYGRSGKLQKAYSFICQMPIPPTAIVWRTLLGACSS 618

Query: 184 SGRKKDAMEIFEQAPVR 200
            G     +E+ EQ   R
Sbjct: 619 HGN----IELAEQVKQR 631


>gi|302786698|ref|XP_002975120.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
 gi|300157279|gb|EFJ23905.1| hypothetical protein SELMODRAFT_102603 [Selaginella moellendorffii]
          Length = 485

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 195/511 (38%), Positives = 308/511 (60%), Gaps = 32/511 (6%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           ++ +   + +++    + G+   G++VH+    +    D +V ++LV+MY KC     AR
Sbjct: 6   VERNKVTYVTVLSGFTTPGSLEEGRRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEAR 65

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF-EQAPVRNLFLWTALVSGLVQSRNEI 219
           A F+ I   N VSW+AML+AYA++G  + A+E++ E    R          G+  +R   
Sbjct: 66  AAFEKISRPNVVSWSAMLAAYAQNGHARMALELYREMGSARK---------GMAPNR--- 113

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
               +FI                +++ AC+    L  G++IH  V   G+++ L + NA+
Sbjct: 114 ---VTFI----------------TLLDACSFLGALAEGRKIHAAVAERGFDTDLVVCNAL 154

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           V+ Y +C  +  AK +F  MRR+DV+SW+S+I   AQ G+ +E + LY  M+S G  P++
Sbjct: 155 VNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHRMLSEGTLPDD 214

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           + F+ +++ACS+ G+V      F+S++ D  + P+L+HY C++D+L R+G L +AE+L++
Sbjct: 215 IIFISVLFACSNSGVVEASGDFFRSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLR 274

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
            MPF P    +  +LSACK + + E G   A  +  L PE+ S YI L+N+Y++A   + 
Sbjct: 275 LMPFHPGPLLYMTMLSACKLYTDVERGEAAAEVVFELDPENSSPYITLANIYSAAKRPKD 334

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
            +++RKLM    +KK+PG S+IE     H F AG+  HP +DEI+  +  L  +MK  GY
Sbjct: 335 AARIRKLMEERGIKKKPGCSWIEVLDRVHEFIAGDKMHPQRDEIYAEIQRLGRQMKEAGY 394

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
             DT  VL D+E+ EKE  L++HSE+LA+A+GL+ + PG  LR+VKNLRVC DCH   K+
Sbjct: 395 FQDTKVVLQDVEEDEKENLLWYHSEKLAIAFGLISTPPGAPLRIVKNLRVCSDCHAATKV 454

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           IS++T REI+VRD  R+HHF DG CSCND+W
Sbjct: 455 ISKVTGREILVRDTNRFHHFLDGMCSCNDYW 485



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 136/279 (48%), Gaps = 34/279 (12%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H+++   GL     +   L++ YGKC  V+ A    E++ + + VSW+++L AY Q 
Sbjct: 30  RRVHSRVAGAGLEVDVIVGTALVNMYGKCQSVEEARAAFEKISRPNVVSWSAMLAAYAQN 89

Query: 83  NLPQKTISIFSTMLALDK-LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
              +  + ++  M +  K + P+   F +L+ AC  LGA   G+++HA      F  D V
Sbjct: 90  GHARMALELYREMGSARKGMAPNRVTFITLLDACSFLGALAEGRKIHAAVAERGFDTDLV 149

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V ++LV+ Y +CG   +A+ VFD ++ ++ +SW++M+SA+A+ GR  +AME++ +     
Sbjct: 150 VCNALVNFYGRCGSLGDAKIVFDGMRRRDVISWSSMISAFAQRGRVDEAMELYHR----- 204

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL-GKQI 260
                                     M  EG  + D ++  S++ AC+N  V+E  G   
Sbjct: 205 --------------------------MLSEGT-LPDDIIFISVLFACSNSGVVEASGDFF 237

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
             +V     E  L     +VD+  +   +  A+D+   M
Sbjct: 238 RSIVGDTQVEPTLEHYACMVDVLGRAGKLRDAEDLLRLM 276


>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
          Length = 703

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 204/556 (36%), Positives = 322/556 (57%), Gaps = 31/556 (5%)

Query: 42  NTLIDAYGKCDL-VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL-- 98
           NTLI A  +    +  A  L + MPQRDH +W+++++ Y +   P+  ++++  M     
Sbjct: 98  NTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYARHGQPEAALALYRRMQEEPG 157

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           +    + F  +S + A  +    R G+++H C V+    D            A  G    
Sbjct: 158 NDGADNEFTASSALAAAAAARCGRAGRELH-CHVVRRGID------------AAGG---- 200

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
                      ++V W+A+   YA+ GR  DA  +F++ PVR+   WTA+V         
Sbjct: 201 -----------DAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRG 249

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            + F  F+ M R      +    + ++ ACA FAV   G+Q+HG +   G     F  +A
Sbjct: 250 GEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEFAVESFGRQVHGRMAKSGTGDSCFAESA 309

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++ MY+KC D+ +A  +F  M + D+VSWT++I G AQ+GQ EE L  +D  + +G+KP+
Sbjct: 310 LLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPD 369

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
            VTFVG++ AC+H GLV KG ++F S+ E Y I  +  HY C++DLLSRSG  + AE +I
Sbjct: 370 HVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMI 429

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
             M  +P++  WA+LL  C+ H+N  +  R A  L  ++PE+P++Y+ L+N+YAS  ++ 
Sbjct: 430 GNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYASVGLFD 489

Query: 459 HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
            V  VR++M    + K P  S+IE G+  H+F  G+ SHP  DEI+ LL +L  +M   G
Sbjct: 490 EVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEG 549

Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
           YV D   VLHD+E ++KE+ + +HSERLAVA+G++ S  G+ ++V KNLR+CGDCH  +K
Sbjct: 550 YVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIASPEGSPIKVFKNLRICGDCHAAIK 609

Query: 579 MISRITKREIVVRDAT 594
           +IS+I +R+I+VRD+ 
Sbjct: 610 LISQIVQRDIIVRDSN 625



 Score =  212 bits (539), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 164/603 (27%), Positives = 276/603 (45%), Gaps = 98/603 (16%)

Query: 23  KTLHAQIIKLGLHQYGP---LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           + LH  +++ G+   G    L + L D Y KC  V  A  + + MP RD VSW +++  Y
Sbjct: 184 RELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERY 243

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
                  +   +F  ML    ++P+ F +A +++AC        G+QVH     S   D 
Sbjct: 244 FDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEFAVESFGRQVHGRMAKSGTGDS 303

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
              +S+L+ MY+KCG   +A  VF+++   + VSWTA++S YA++G+ ++A+  F     
Sbjct: 304 CFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYF----- 358

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
            ++FL                         R G+   D +    ++ ACA+  +++ G +
Sbjct: 359 -DMFL-------------------------RSGIK-PDHVTFVGVLSACAHAGLVDKGLE 391

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           I     ++  + C+       D YA   D++                        ++ GQ
Sbjct: 392 I---FHSIKEQYCI---EHTADHYACVIDLL------------------------SRSGQ 421

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
            E    +   M    VKPN+  +  L+  C     VG  R+  +++ E     P+   Y 
Sbjct: 422 FERAEKMIGNMA---VKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPAT--YV 476

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK-- 437
            L ++ +  G  DE E++ + M     E      + A       E+G RV   L+  K  
Sbjct: 477 TLANIYASVGLFDEVEDVRRIM-----ESKGITKMPASSW---IEVGRRVHVFLVGDKSH 528

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLM-SVMEVKKEPGYSY------IEFGKGSHIF 490
           P+    Y LL  +Y       +V+ +  ++  V + +KE    Y      + FG      
Sbjct: 529 PKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFG-----I 583

Query: 491 YAGETSHPLKDEIFELLT---ELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
            A     P+K  +F+ L    +  A +K    +     ++ D     KE+ + +HSERLA
Sbjct: 584 IASPEGSPIK--VFKNLRICGDCHAAIKLISQIVQRDIIVRD-SNSLKEQDIGYHSERLA 640

Query: 548 VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
           VA+G++ S  G+ ++V KNLR+CGDCH  +K+IS+I +R+I+VRD+ R+HHFKDG CSC 
Sbjct: 641 VAFGIIASPEGSPIKVFKNLRICGDCHTAIKLISQIVQRDIIVRDSNRFHHFKDGICSCR 700

Query: 608 DFW 610
           D+W
Sbjct: 701 DYW 703



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 148/294 (50%), Gaps = 12/294 (4%)

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK-KDAMEIFEQAPVRNLFLWTALVSGLV 213
           LP+ A A+F SI   +  S   ++SA +RS R    A E+F++ P R+ F W+ALVSG  
Sbjct: 79  LPD-ALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYA 137

Query: 214 QSRNEIDAFYSFIEMRRE-GVDIVD-PLVLSSIVGACANFAVLELGKQIHGLVIALGYES 271
           +      A   +  M+ E G D  D     SS + A A       G+++H  V+  G ++
Sbjct: 138 RHGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDA 197

Query: 272 C---LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
                 + +A+ DMYAKC  +  A+ +F RM  +D VSWT+++      G+  E   L+ 
Sbjct: 198 AGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFL 257

Query: 329 EMV-SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
            M+ + GV+PNE T+ G++ AC+   +   GR++   M +  G   S    + LL + S+
Sbjct: 258 HMLRTRGVRPNEFTYAGVLRACAEFAVESFGRQVHGRMAKS-GTGDSCFAESALLRMYSK 316

Query: 388 SGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPE 439
            G +  A  + +AM  +PD  +W A++S    +   E   R  +  L   +KP+
Sbjct: 317 CGDMGSAVRVFEAMA-KPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPD 369



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 87/218 (39%), Gaps = 42/218 (19%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   LR CA   +    + +H ++ K G        + L+  Y KC  +  A  + E M 
Sbjct: 272 YAGVLRACAEFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMA 331

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           + D VSW ++++ Y Q   P++ +  F  M     ++PDH  F  ++ AC          
Sbjct: 332 KPDLVSWTAVISGYAQNGQPEEALRYFD-MFLRSGIKPDHVTFVGVLSAC---------- 380

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTA-----MLSA 180
                                    A  GL +    +F SIK +  +  TA     ++  
Sbjct: 381 -------------------------AHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDL 415

Query: 181 YARSGRKKDAMEIFEQAPVR-NLFLWTALVSGLVQSRN 217
            +RSG+ + A ++     V+ N FLW +L+ G    +N
Sbjct: 416 LSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKN 453


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 214/588 (36%), Positives = 316/588 (53%), Gaps = 34/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   ++ G      +   L+D Y KC  ++ A  L + M +R+ VSW S++ AY Q 
Sbjct: 256 KEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQN 315

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P++ + IF  ML  + ++P        + AC  LG    G+ +H   V      +  V
Sbjct: 316 ENPKEAMLIFQKMLD-EGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRNVSV 374

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SL+ MY KC   + A ++F  ++ +  VS                             
Sbjct: 375 VNSLISMYCKCKEVDTAASMFGKLQSRTLVS----------------------------- 405

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W A++ G  Q+   IDA   F +MR   V   D     S++ A A  ++    K IHG
Sbjct: 406 --WNAMILGFAQNGRPIDALNYFSQMRSRTVK-PDTFTYVSVITAIAELSITHHAKWIHG 462

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           +V+    +  +F++ A+VDMYAKC  I+ A+ IF  M  + V +W ++I G   HG  + 
Sbjct: 463 VVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKA 522

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L++EM    +KPN VTF+ +I ACSH GLV  G K F  M E+Y I  S+ HY  ++
Sbjct: 523 ALELFEEMQKGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMV 582

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G L+EA + I  MP +P    + A+L AC+ H+N     + A  L  L P+D  
Sbjct: 583 DLLGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGG 642

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            ++LL+N+Y +A+MW+ V +VR  M    ++K PG S +E     H F++G T+HP   +
Sbjct: 643 YHVLLANIYRAASMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKK 702

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I+  L +L   +K  GYVPDT+ VL  +E   KE+ L  HSE+LA+++GLL +  GT + 
Sbjct: 703 IYAFLEKLICHIKEAGYVPDTNLVL-GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIH 761

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           V KNLRVC DCH   K IS +T REIVVRD  R+HHFK+G CSC D+W
Sbjct: 762 VRKNLRVCADCHNATKYISLVTGREIVVRDMQRFHHFKNGACSCGDYW 809



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 186/370 (50%), Gaps = 34/370 (9%)

Query: 29  IIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKT 88
           + K GL+Q       L+  + +   V  A  + E +  + +V + ++L  + + +   K 
Sbjct: 60  VFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKA 119

Query: 89  ISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVD 148
           +  F  M   D ++P  + F  L+K CG     R+GK++H   V S F  D    + L +
Sbjct: 120 LQFFVRM-RYDDVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLEN 178

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           MYAKC   N AR VFD +  ++ VSW  +++ Y+++G  + A+E                
Sbjct: 179 MYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALE---------------- 222

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
              +V+S  E +   SFI              + S++ A +   ++ +GK+IHG  +  G
Sbjct: 223 ---MVKSMCEENLKPSFI-------------TIVSVLPAVSALRLISVGKEIHGYAMRSG 266

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
           ++S + IS A+VDMYAKC  +  A+ +F  M  ++VVSW S+I    Q+   +E + ++ 
Sbjct: 267 FDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQ 326

Query: 329 EMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
           +M+  GVKP +V+ +G ++AC+ +G + +GR + K  +E  G+  ++     L+ +  + 
Sbjct: 327 KMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVE-LGLDRNVSVVNSLISMYCKC 385

Query: 389 GHLDEAENLI 398
             +D A ++ 
Sbjct: 386 KEVDTAASMF 395



 Score = 47.4 bits (111), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 78/182 (42%), Gaps = 13/182 (7%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  +   A   I    K +H  +++  L +   +   L+D Y KC  +  A  + + M 
Sbjct: 441 YVSVITAIAELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMS 500

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +R   +W +++  Y      +  + +F  M     ++P+   F S++ AC   G    G 
Sbjct: 501 ERHVTTWNAMIDGYGTHGFGKAALELFEEMQK-GTIKPNGVTFLSVISACSHSGLVEAGL 559

Query: 126 QVHACFVLSPFCDDDVVKSS------LVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAML 178
           +   CF +    ++  ++ S      +VD+  + G  N A      + +K +V+ + AML
Sbjct: 560 K---CFYMMK--ENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYGAML 614

Query: 179 SA 180
            A
Sbjct: 615 GA 616


>gi|449446125|ref|XP_004140822.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 809

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 207/562 (36%), Positives = 325/562 (57%), Gaps = 9/562 (1%)

Query: 35  HQYGPLP-------NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQK 87
           H Y  +P       N++I  +G   LV  A  L +EM ++D V+W++++  + Q  + ++
Sbjct: 165 HIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDMVTWSALIACFQQNEMYEE 224

Query: 88  TISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLV 147
            I  F  M  +  +  D  V  S + AC +L    +GK +H+  +         ++++L+
Sbjct: 225 AIRTFVGMHKIG-VMVDEVVAVSALSACANLLVVNMGKLIHSLSLKIGTESYINLQNALI 283

Query: 148 DMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTA 207
            MY+KCG    AR +FD   L + +SW +M+S Y +     +A  IF+  P +++  W++
Sbjct: 284 YMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSS 343

Query: 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267
           ++SG  Q+    +    F EM+  G    D   L S++ ACA  A LE GK +H  +   
Sbjct: 344 MISGYAQNDLFDETLALFQEMQMSGFK-PDETTLVSVISACARLAALEQGKWVHAYIKRN 402

Query: 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327
           G    + +   ++DMY KC  +  A ++F  M  K + +W ++I+G A +G  E +L ++
Sbjct: 403 GLTINVILGTTLIDMYMKCGCVETALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMF 462

Query: 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
             M    V PNE+TF+G++ AC H+GLV +G+  F SMI D+ I P+++HY C++DLL R
Sbjct: 463 SNMKKCHVTPNEITFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYGCMVDLLGR 522

Query: 388 SGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447
           +G L EAE L+  MP  PD  TW ALL ACK H ++EMG RV   L+ L+P+    ++LL
Sbjct: 523 AGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSEMGRRVGRKLIELQPDHDGFHVLL 582

Query: 448 SNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELL 507
           SN+YAS   W  V ++R +M+   V K PG S IE     H F AG+ +HP  D I ++L
Sbjct: 583 SNIYASKGKWDDVLEIRGMMTKHRVLKIPGCSMIEANGVIHEFLAGDKTHPDMDAIEDML 642

Query: 508 TELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNL 567
            E+  ++K  GY PD + VL D++++EKE  LF HSE+LA+A+GL+   P T +R++KNL
Sbjct: 643 VEMAMKLKLEGYTPDINEVLLDVDEEEKESTLFRHSEKLAIAFGLINISPPTPIRIMKNL 702

Query: 568 RVCGDCHIVMKMISRITKREIV 589
           R+C DCH   K+IS+   R+IV
Sbjct: 703 RICNDCHTAAKLISKAFCRKIV 724



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 203/423 (47%), Gaps = 66/423 (15%)

Query: 54  VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVK 113
           + Y   +   +   +   W  ++ AY Q N P    +++ +ML+ + L  D++ +  L++
Sbjct: 28  IDYTRRIFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLS-NYLGADNYTYPLLIQ 86

Query: 114 ACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS 173
           AC    +    KQVH   +   F  D  V+++L++ ++ C    +A  VF+   + +SVS
Sbjct: 87  ACSIRRSEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVS 146

Query: 174 WTAMLSAYARSGRKKDAMEIFEQAPVR-------------------------------NL 202
           W ++L+ Y   G  ++A  I+ Q P R                               ++
Sbjct: 147 WNSILAGYIEIGNVEEAKHIYHQMPERSIIASNSMIVLFGMRGLVVEACKLFDEMLEKDM 206

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W+AL++   Q+    +A  +F+ M + GV +VD +V  S + ACAN  V+ +GK IH 
Sbjct: 207 VTWSALIACFQQNEMYEEAIRTFVGMHKIGV-MVDEVVAVSALSACANLLVVNMGKLIHS 265

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIA------------------------------- 291
           L + +G ES + + NA++ MY+KC DI+                                
Sbjct: 266 LSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDLISWNSMISGYLKCNLVDN 325

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           AK IF  M  KDVVSW+S+I G AQ+   +ETLAL+ EM  +G KP+E T V +I AC+ 
Sbjct: 326 AKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEMQMSGFKPDETTLVSVISACAR 385

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
           +  + +G K   + I+  G+T ++   T L+D+  + G ++ A  +   M  E    TW 
Sbjct: 386 LAALEQG-KWVHAYIKRNGLTINVILGTTLIDMYMKCGCVETALEVFYGM-IEKGISTWN 443

Query: 412 ALL 414
           AL+
Sbjct: 444 ALI 446



 Score =  102 bits (253), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/345 (22%), Positives = 145/345 (42%), Gaps = 66/345 (19%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYG-------------------- 49
           L  CA   +    K +H+  +K+G   Y  L N LI  Y                     
Sbjct: 248 LSACANLLVVNMGKLIHSLSLKIGTESYINLQNALIYMYSKCGDIMVARKLFDEAYLLDL 307

Query: 50  -----------KCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                      KC+LV  A  + + MP++D VSW+S+++ Y Q +L  +T+++F  M  +
Sbjct: 308 ISWNSMISGYLKCNLVDNAKAIFDSMPEKDVVSWSSMISGYAQNDLFDETLALFQEM-QM 366

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
              +PD     S++ AC  L A   GK VHA    +    + ++ ++L+DMY KCG    
Sbjct: 367 SGFKPDETTLVSVISACARLAALEQGKWVHAYIKRNGLTINVILGTTLIDMYMKCGCVET 426

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A  VF  +  K   +W A++   A +G  + ++++F      ++            + NE
Sbjct: 427 ALEVFYGMIEKGISTWNALILGLAMNGLVESSLDMFSNMKKCHV------------TPNE 474

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK-QIHGLVIALGYESCLFISN 277
           I                        ++GAC +  +++ G+   + ++     +  +    
Sbjct: 475 I--------------------TFMGVLGACRHMGLVDEGQHHFYSMIHDHKIQPNVKHYG 514

Query: 278 AIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAE 321
            +VD+  +   +  A+++  RM    DV +W +++    +HG +E
Sbjct: 515 CMVDLLGRAGKLQEAEELLNRMPMTPDVATWGALLGACKKHGDSE 559



 Score = 76.3 bits (186), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/260 (26%), Positives = 113/260 (43%), Gaps = 16/260 (6%)

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           IF      N F+W  ++   +Q+ +   AF  +  M    +   D      ++ AC+   
Sbjct: 34  IFNFIENTNCFMWNMMIRAYIQTNSPHFAFTLYKSMLSNYLG-ADNYTYPLLIQACSIRR 92

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
                KQ+H  V+ LG++S +++ N +++ ++ CS++  A  +F      D VSW SI+ 
Sbjct: 93  SEWEAKQVHNHVLKLGFDSDVYVRNTLINCFSVCSNMTDACRVFNESSVLDSVSWNSILA 152

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G  + G  EE   +Y +M    +  +      +I      GLV +  KLF  M+E   +T
Sbjct: 153 GYIEIGNVEEAKHIYHQMPERSIIASN----SMIVLFGMRGLVVEACKLFDEMLEKDMVT 208

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRV 429
                ++ L+    ++   +EA      M       DE    + LSAC +     MG  +
Sbjct: 209 -----WSALIACFQQNEMYEEAIRTFVGMHKIGVMVDEVVAVSALSACANLLVVNMGKLI 263

Query: 430 ANHLLSLKPEDPSSYILLSN 449
             H LSLK     SYI L N
Sbjct: 264 --HSLSLKI-GTESYINLQN 280


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/662 (33%), Positives = 362/662 (54%), Gaps = 76/662 (11%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           T++ +H  +IK G   Y  L + LID Y KC  +  A  L +E+P R  V+W S+++++ 
Sbjct: 19  TLRAVHTNVIKSGF-SYSFLGHKLIDGYIKCGSLAEARKLFDELPSRHIVTWNSMISSHI 77

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC---------- 130
                ++ +  +  ML ++ + PD + F+++ KA   LG  R G++ H            
Sbjct: 78  SHGKSKEAVEFYGNML-MEGVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLEVLD 136

Query: 131 -FVLSPFCD---------------------DDVVKSSLVDMYAKCGLPNNARAVFDSI-- 166
            FV S   D                     D V+ ++L+  YA+ GL   A  +F+ +  
Sbjct: 137 GFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVN 196

Query: 167 ---------------------KLKNS----------------VSWTAMLSAYARSGRKKD 189
                                 L N                  S T++L+ Y+R    +D
Sbjct: 197 RGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMIED 256

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           ++++F Q    N   WT+ V GLVQ+  E  A   F EM R  +   +P  LSSI+ AC+
Sbjct: 257 SIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSIS-PNPFTLSSILQACS 315

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           + A+LE+G+QIH + + LG +   +   A++++Y KC ++  A+ +F  +   DVV+  S
Sbjct: 316 SLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINS 375

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I   AQ+G   E L L++ + + G+ PN VTF+ ++ AC++ GLV +G ++F S+  ++
Sbjct: 376 MIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRNNH 435

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            I  ++ H+TC++DLL RS  L+EA  LI+ +   PD   W  LL++CK H   EM  +V
Sbjct: 436 NIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR-NPDVVLWRTLLNSCKIHGEVEMAEKV 494

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
            + +L L P D  ++ILL+N+YASA  W  V +++  +  +++KK P  S+++  +  H 
Sbjct: 495 MSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWVDVDREVHT 554

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F AG+ SHP   EIFE+L  L  ++K  GY P+T  VL D+++++K   L++HSE+LA+A
Sbjct: 555 FMAGDLSHPRSLEIFEMLHGLMKKVKTLGYNPNTRFVLQDLDEEKKISSLYYHSEKLAIA 614

Query: 550 YGLLKSVP-GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           Y L K++   T +R+ KNLRVCGDCH  +K +S +T R+I+ RD+ R+HHFK G CSC D
Sbjct: 615 YALWKTIGRTTTIRIFKNLRVCGDCHSWIKFVSLLTGRDIIARDSKRFHHFKGGLCSCKD 674

Query: 609 FW 610
           +W
Sbjct: 675 YW 676



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 194/410 (47%), Gaps = 50/410 (12%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           ++SL+       +    + VH   + S F     +   L+D Y KCG    AR +FD + 
Sbjct: 4   YSSLIAQSAHTKSLTTLRAVHTNVIKSGF-SYSFLGHKLIDGYIKCGSLAEARKLFDELP 62

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            ++ V+W +M+S++   G+ K+A+E                             FY    
Sbjct: 63  SRHIVTWNSMISSHISHGKSKEAVE-----------------------------FYG--N 91

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC-LFISNAIVDMYAKC 286
           M  EGV + D    S+I  A +   ++  G++ HGL + LG E    F+++A+VDMYAK 
Sbjct: 92  MLMEGV-LPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLEVLDGFVASALVDMYAKF 150

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             +  A  +F R+  KDVV +T++IVG AQHG   E L ++++MV+ GVKPNE T   ++
Sbjct: 151 DKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNEYTLACIL 210

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
             C ++G +  G +L   ++   G+   +   T LL + SR   ++++  +   + +  +
Sbjct: 211 INCGNLGDLVNG-QLIHGLVVKSGLESVVASQTSLLTMYSRCNMIEDSIKVFNQLDY-AN 268

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLL--SLKPEDPSSYILLSNVYASAAMWQHVSKVR 464
           + TW + +     +   E+   +   ++  S+ P +P +   +    +S AM +   ++ 
Sbjct: 269 QVTWTSFVVGLVQNGREEVAVSIFREMIRCSISP-NPFTLSSILQACSSLAMLEVGEQIH 327

Query: 465 KLMSVMEV--KKEPGYSYIE-FGKGSHIFYAGETSHPLKDEIFELLTELD 511
            +   + +   K  G + I  +GK  ++  A          +F++LTELD
Sbjct: 328 AITMKLGLDGNKYAGAALINLYGKCGNMDKA--------RSVFDVLTELD 369



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 119/277 (42%), Gaps = 18/277 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+   +    + +HA  +KLGL         LI+ YGKC  +  A  + + + + D 
Sbjct: 311 LQACSSLAMLEVGEQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDV 370

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+  S++ AY Q     + + +F  +  +  L P+   F S++ AC + G    G Q+ A
Sbjct: 371 VAINSMIYAYAQNGFGHEALELFERLKNMG-LVPNGVTFISILLACNNAGLVEEGCQIFA 429

Query: 130 CFVLSPFCDDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR-- 186
               +   +  +   + ++D+  +      A  + + ++  + V W  +L++    G   
Sbjct: 430 SIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVRNPDVVLWRTLLNSCKIHGEVE 489

Query: 187 --KKDAMEIFEQAP--------VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
             +K   +I E AP        + NL+      + +++ ++ I             VD V
Sbjct: 490 MAEKVMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLKLKKSPAMSWVD-V 548

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGL---VIALGYE 270
           D  V + + G  ++   LE+ + +HGL   V  LGY 
Sbjct: 549 DREVHTFMAGDLSHPRSLEIFEMLHGLMKKVKTLGYN 585


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  397 bits (1021), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 209/597 (35%), Positives = 336/597 (56%), Gaps = 37/597 (6%)

Query: 19  ALTVKTLHAQIIKLGLHQYGPLPN-----TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWA 73
           A T+  LH Q +   +H++G   N      L+D Y KC  +  A  + ++MP+R+ VSW 
Sbjct: 256 AATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWN 315

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           S++  +   NL  + + +F  +L    + P+    +S++ AC ++G    G+QVH   V 
Sbjct: 316 SMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVK 375

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
                   V +SL+DMY KC   +    +F  +  ++ V+W                   
Sbjct: 376 YGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTW------------------- 416

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
                         LV G VQ+    +A   F  MRREG+ + D    S+++ + A+ A 
Sbjct: 417 ------------NVLVMGFVQNDKFEEACNYFWVMRREGI-LPDEASFSTVLHSSASLAA 463

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L  G  IH  +I LGY   + I  +++ MYAKC  ++ A  +F  +   +V+SWT++I  
Sbjct: 464 LHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISA 523

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
              HG A + + L++ M+S G++P+ VTFV ++ ACSH G V +G   F SM + + + P
Sbjct: 524 YQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNP 583

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
             +HY C++DLL R+G LDEA+  I++MP +P    W ALL AC+ + N +MG   A  L
Sbjct: 584 GPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERL 643

Query: 434 LSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAG 493
             ++P +P +Y+LL+N+   +   +  ++VR+LM V  V+KEPG S+I+    + +F A 
Sbjct: 644 FEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAH 703

Query: 494 ETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLL 553
           + SH   DEI+++L +L+  +K++GYV +T  V + +E+ E+E+ L++HSE+LA+A+GLL
Sbjct: 704 DRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLL 763

Query: 554 KSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
                + +R+ KNLR CG CH VMK+ S+I  REI+VRD  R+H F DG CSC D+W
Sbjct: 764 TLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 820



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/464 (23%), Positives = 217/464 (46%), Gaps = 54/464 (11%)

Query: 25  LHAQIIKLGLHQYGPLP---NTLIDAYGKCDLVQYA-------HHLLEEMPQRDHVSWAS 74
           +H QII   ++ Y  LP   N LI+ Y KC  +  A       HH  + +     V+W S
Sbjct: 164 IHTQII---INNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTI-----VTWTS 215

Query: 75  ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134
           ++T  +  N+  + +S+F+ M       P+ F F+S++ A  +      G+Q+H+     
Sbjct: 216 LITHLSHFNMHLQALSLFNQMRCSGPY-PNQFTFSSILSASAATMMVLHGQQLHSLIHKH 274

Query: 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
            F  +  V ++LVDMYAKC   ++A  VFD +  +N VSW +M+  +  +     A+ +F
Sbjct: 275 GFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVF 334

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
           +                               ++ RE   I + + +SS++ ACAN   L
Sbjct: 335 K-------------------------------DVLREKTVIPNEVSVSSVLSACANMGGL 363

Query: 255 ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
             G+Q+HG+V+  G     ++ N+++DMY KC        +F  +  +DVV+W  +++G 
Sbjct: 364 NFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGF 423

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
            Q+ + EE    +  M   G+ P+E +F  ++++ + +  + +G  +   +I+  G   +
Sbjct: 424 VQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIK-LGYVKN 482

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           +     L+ + ++ G L +A  + + +  + +  +W A++SA + H        +  H+L
Sbjct: 483 MCILGSLITMYAKCGSLVDAYQVFEGIE-DHNVISWTAMISAYQLHGCANQVIELFEHML 541

Query: 435 S--LKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEP 476
           S  ++P   +   +LS    +  + + ++    +  + ++   P
Sbjct: 542 SEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGP 585



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 139/290 (47%), Gaps = 33/290 (11%)

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q+H   +++ +     + ++L+++YAKCG  N A  +F                      
Sbjct: 163 QIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFS--------------------- 201

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
                         + +  WT+L++ L      + A   F +MR  G    +    SSI+
Sbjct: 202 --------ITHHHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSG-PYPNQFTFSSIL 252

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            A A   ++  G+Q+H L+   G+++ +F+  A+VDMYAKC+D+ +A  +F +M  +++V
Sbjct: 253 SASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLV 312

Query: 306 SWTSIIVGTAQHGQAEETLALY-DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           SW S+IVG   +   +  + ++ D +    V PNEV+   ++ AC+++G +  GR++   
Sbjct: 313 SWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQV-HG 371

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           ++  YG+ P       L+D+  +    DE   L + +  + D  TW  L+
Sbjct: 372 VVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVG-DRDVVTWNVLV 420



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 100/205 (48%), Gaps = 4/205 (1%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWTSII 311
           L+   QIH  +I   Y S  F+ N ++++YAKC  +  A  +F       K +V+WTS+I
Sbjct: 158 LKHATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLI 217

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
              +      + L+L+++M  +G  PN+ TF  ++ A +   +V  G++L  S+I  +G 
Sbjct: 218 THLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQL-HSLIHKHGF 276

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
             ++   T L+D+ ++   +  A  +   MP E +  +W +++    H+   +    V  
Sbjct: 277 DANIFVGTALVDMYAKCADMHSAVRVFDQMP-ERNLVSWNSMIVGFFHNNLYDRAVGVFK 335

Query: 432 HLLSLKPEDPSSYILLSNVYASAAM 456
            +L  K   P+   + S + A A M
Sbjct: 336 DVLREKTVIPNEVSVSSVLSACANM 360


>gi|413916233|gb|AFW56165.1| hypothetical protein ZEAMMB73_705806 [Zea mays]
          Length = 597

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 220/603 (36%), Positives = 335/603 (55%), Gaps = 45/603 (7%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           +V   HA+++K G+       N L+ AY +C  +  A  L + M  RD VSW ++++ Y 
Sbjct: 27  SVAATHAKLVKAGIATPLSSSNHLLAAYCRCGAIGRARDLFDGMRDRDVVSWTTLMSGYA 86

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
            A  P+  +S+   M     ++P+   F++    C  L    LG+QVHA   ++    D 
Sbjct: 87  AAARPRDAVSLLRAM-GCSGVRPNAVTFSTAACTCARLADAELGRQVHAQAEIAGCARDT 145

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIK--LKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           VV ++LVDMY K G   +ARAVFD++    +N+VSW AML+ Y ++    +A+E+F    
Sbjct: 146 VVATALVDMYGKSGSVEDARAVFDAMAAPARNAVSWGAMLAVYVQNALGNEAVELFA--- 202

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELG 257
                                       E+R  G  +  +  +L+S+V ACA  A L +G
Sbjct: 203 ----------------------------ELRTCGGGMAPNHFMLASVVSACAGMARLGIG 234

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           + +HG V+ LGY +   IS A+VDMY+KC     ++ +F R+ +  VV++TSIIV  A++
Sbjct: 235 RCVHGAVLRLGYGNNDVISVALVDMYSKCGRYEYSRKVFDRIEQPSVVTYTSIIVAAAKY 294

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G+    L L++EMV  GV+PN+VT +G+++ACSH GLV  G +L +SM   YG+ P   H
Sbjct: 295 GRWTCALTLFNEMVDQGVQPNDVTLLGVMHACSHSGLVDTGLQLLRSMQSRYGVAPCPSH 354

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEP--TWAALLSACKHHRNTEMGTRVANHLLS 435
           YT  +D+L R+G L+EA  L K    E ++    W +LLSAC+ H+  ++ T     +  
Sbjct: 355 YTSAVDMLGRAGRLEEAFELAKEAQLEGNDALLLWNSLLSACRTHKRLDLATMAGQRVYE 414

Query: 436 LKPED--PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAG 493
              +    +  +++SN Y SA    + + VR  M +  ++K+PG S+IE     H+FYAG
Sbjct: 415 FNNQQDVAAGLVVMSNAYISAGQIDNAAAVRSSMRLRGIRKDPGCSWIEVKDTPHVFYAG 474

Query: 494 ETS--HPLKDEIFELLTELDAEMKRRGYVPDTSSV----LHDMEQKEKERQLFWHSERLA 547
             S      D++  LL EL+++M+ RGY     S      H+ E++ K   +  HSE LA
Sbjct: 475 AVSCAGAWADKVLMLLDELESKMRERGYRGRLGSARVSDAHEDEEEGKGVMVGVHSEILA 534

Query: 548 VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
           +A+GLL    G  +RV+KNLR+C DCH V K+IS I + E VVRD  R+HHFK G CSCN
Sbjct: 535 LAFGLLVVPNGMTIRVMKNLRMCSDCHEVFKLISAIVESEFVVRDLNRFHHFKLGSCSCN 594

Query: 608 DFW 610
           D+W
Sbjct: 595 DYW 597



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 102/187 (54%), Gaps = 3/187 (1%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM--PQRDHV 70
           CAR   A   + +HAQ    G  +   +   L+D YGK   V+ A  + + M  P R+ V
Sbjct: 120 CARLADAELGRQVHAQAEIAGCARDTVVATALVDMYGKSGSVEDARAVFDAMAAPARNAV 179

Query: 71  SWASILTAYNQANLPQKTISIFSTMLALDK-LQPDHFVFASLVKACGSLGATRLGKQVHA 129
           SW ++L  Y Q  L  + + +F+ +      + P+HF+ AS+V AC  +    +G+ VH 
Sbjct: 180 SWGAMLAVYVQNALGNEAVELFAELRTCGGGMAPNHFMLASVVSACAGMARLGIGRCVHG 239

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +   + ++DV+  +LVDMY+KCG    +R VFD I+  + V++T+++ A A+ GR   
Sbjct: 240 AVLRLGYGNNDVISVALVDMYSKCGRYEYSRKVFDRIEQPSVVTYTSIIVAAAKYGRWTC 299

Query: 190 AMEIFEQ 196
           A+ +F +
Sbjct: 300 ALTLFNE 306


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/604 (35%), Positives = 340/604 (56%), Gaps = 38/604 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGL--HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR 67
           L  CA        K  H  ++K GL  HQY  + N LI  Y +C  V  A  +L+ +P  
Sbjct: 135 LSCCADSGRVKEGKQCHGYLLKSGLLLHQY--VKNALIHMYSRCFHVDSAMQILDTVPGD 192

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           D  S+ SIL+A  ++    +   +   M+  + +  D   + S++  C  +   +LG Q+
Sbjct: 193 DVFSYNSILSALVESGCRGEAAQVLKRMVD-ECVIWDSVTYVSVLGLCAQIRDLQLGLQI 251

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           HA  + +    D  V S+L+D Y KCG   NAR  FD ++                    
Sbjct: 252 HAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLR-------------------- 291

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
                       RN+  WTA+++  +Q+ +  +    F +M  E     +    + ++ A
Sbjct: 292 -----------DRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTR-PNEFTFAVLLNA 339

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
           CA+   L  G  +HG ++  G+++ L + NA+++MY+K  +I ++ ++F  M  +DV++W
Sbjct: 340 CASLVALAYGDLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITW 399

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            ++I G + HG  ++ L ++ +M+SAG  PN VTF+G++ AC H+ LV +G   F  +++
Sbjct: 400 NAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMK 459

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP-FEPDEPTWAALLSACKHHRNTEMG 426
            + + P L+HYTC++ LL R+G LDEAEN +K     + D   W  LL+AC  HRN  +G
Sbjct: 460 KFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLG 519

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
            ++   ++ + P D  +Y LLSN++A A  W  V K+RKLM    +KKEPG S+++    
Sbjct: 520 KQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMKERNIKKEPGASWLDIRNN 579

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
           +H+F +  ++HP   +IFE + +L A +K  GY PD   VLHD+E ++KE  L  HSE+L
Sbjct: 580 THVFVSEGSNHPESTQIFEKVQQLLAMIKPLGYAPDVGVVLHDVEDEQKEGYLSHHSEKL 639

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+AYGL+K  P   +R++KNLR+C DCHI +K+IS+ T R I+VRDA R+HHF++G C+C
Sbjct: 640 ALAYGLMKIPPPGPIRIIKNLRMCDDCHIAVKLISKATNRLIIVRDANRFHHFREGLCTC 699

Query: 607 NDFW 610
           ND W
Sbjct: 700 NDHW 703



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 125/230 (54%), Gaps = 5/230 (2%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  L +CA+ +       +HAQ++K GL     + +TLID YGKC  V  A    + + 
Sbjct: 232 YVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLR 291

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            R+ V+W ++LTAY Q    ++T+++F+ M  L+  +P+ F FA L+ AC SL A   G 
Sbjct: 292 DRNVVAWTAVLTAYLQNGHFEETLNLFTKM-ELEDTRPNEFTFAVLLNACASLVALAYGD 350

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            +H   V+S F +  +V ++L++MY+K G  +++  VF ++  ++ ++W AM+  Y+  G
Sbjct: 351 LLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHG 410

Query: 186 RKKDAMEIFEQ----APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRRE 231
             K A+ +F+         N   +  ++S  V      + FY F ++ ++
Sbjct: 411 LGKQALLVFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKK 460


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  397 bits (1020), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 200/586 (34%), Positives = 337/586 (57%), Gaps = 12/586 (2%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LHA+I+++         N LID Y KC  +  A  + + + + DH+SW S++T      L
Sbjct: 300 LHARILRMEHSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGL 359

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            +  + +F+ M     +  D F+  +++  C        G+ +H   + S       V +
Sbjct: 360 GEDALILFNQMRR-SSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMGSSAPVGN 418

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +++ MYAKCG  + A  VF  + L+N++SWTAM++A++RSG    A   F+  P RN+  
Sbjct: 419 AIITMYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVT 478

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W +++S  VQ+    +    ++ MR  GV   D +  ++ + ACA+ A+++LG Q+    
Sbjct: 479 WNSMLSTYVQNGFSEEGLKLYVSMRSNGVQ-PDWITFTTSIRACADLAIVKLGMQVVTHA 537

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
              G    + ++N+IV MY++C  I  AK+ F  +  KD++SW +++   AQ+G   + +
Sbjct: 538 TKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVI 597

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
             +++M+    KPN +++V ++  CSH+GLV +G+  F SM   +GI+P+ +H++C++DL
Sbjct: 598 DTFEDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDL 657

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
           L R+G L++A++LI+ MPF+P+   W+ALL +C+ H +  +    A  L+ L  E    Y
Sbjct: 658 LGRAGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGY 717

Query: 445 ILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIF 504
           +LLSN+Y+ +    +V+ +RKLM V  ++   G S+IE     H+F   ETSHP   E++
Sbjct: 718 VLLSNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDNRVHVFTVDETSHPQIKEVY 777

Query: 505 ELLTELDAEMKRRG-YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
             L E+   ++  G Y+   SSV          R   +HSE+LA A+GLL       + V
Sbjct: 778 LKLEEMMKMIEDTGKYITVESSV---------HRSKKYHSEKLAFAFGLLNLPSWMPIHV 828

Query: 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +KNLRVC DCH+V+K++S +T RE+++RD  R+HHFKDG CSC D+
Sbjct: 829 MKNLRVCDDCHLVIKLLSLVTSRELIMRDGYRFHHFKDGICSCKDY 874



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 197/403 (48%), Gaps = 12/403 (2%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQR--DHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           NT+I A      +  A  L +EMP R  D VSW ++++ Y+Q     ++   FS M+   
Sbjct: 78  NTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDT 137

Query: 100 K---LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP 156
                  D F F S++KACGSLG +RL  Q+HA      F  +  +++S+V MY KCG  
Sbjct: 138 NDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNSVVGMYVKCGDV 197

Query: 157 NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
           + A  VF  I+  +   W +M+  Y++      A++IF + P R+   W  L+S   Q  
Sbjct: 198 DLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHG 257

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
             +     F+EM  +G    + +   S++ ACA+ + L+ G  +H  ++ + +   L   
Sbjct: 258 FGVQCLAMFVEMCNQGFS-PNFMTYGSVLSACASTSDLKWGAHLHARILRMEHSLDLVFG 316

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK 336
           N ++DMYAKC  +  AK +F  +R  D +SW S+I G    G  E+ L L+++M  + V 
Sbjct: 317 NGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVV 376

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
            +E     ++  CS       G  L    I+  G+  S      ++ + ++ G  D+A+ 
Sbjct: 377 LDEFILPTILGVCSGPDYASTGELLHGYTIKS-GMGSSAPVGNAIITMYAKCGDTDKADL 435

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           + + MP   +  +W A+++A    R+ ++G   A     + PE
Sbjct: 436 VFRLMPLR-NTISWTAMITA--FSRSGDIGK--ARGYFDMMPE 473



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 36/219 (16%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VC+    A T + LH   IK G+    P+ N +I  Y KC     A  +   MP R+ 
Sbjct: 386 LGVCSGPDYASTGELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLRNT 445

Query: 70  VSWASILTAYNQAN-----------LPQKTISIFSTMLAL-------------------D 99
           +SW +++TA++++            +P++ I  +++ML+                    +
Sbjct: 446 ISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMRSN 505

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQV--HAC-FVLSPFCDDDVVKSSLVDMYAKCGLP 156
            +QPD   F + ++AC  L   +LG QV  HA  F LS    +  V +S+V MY++CGL 
Sbjct: 506 GVQPDWITFTTSIRACADLAIVKLGMQVVTHATKFGLSL---NVSVANSIVTMYSRCGLI 562

Query: 157 NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
             A+  FDSI  K+ +SW AML+A+A++G     ++ FE
Sbjct: 563 KEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTFE 601



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 9/176 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +R CA   I      +     K GL     + N+++  Y +C L++ A +  + +  +D 
Sbjct: 518 IRACADLAIVKLGMQVVTHATKFGLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDL 577

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ--- 126
           +SW ++L A+ Q  L  K I  F  ML  +  +P+H  + S++  C  +G    GK    
Sbjct: 578 ISWNAMLAAFAQNGLGIKVIDTFEDMLKTE-CKPNHISYVSVLSGCSHMGLVAEGKHYFD 636

Query: 127 -VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
            +   F +SP  +     S +VD+  + GL   A+ + + +  K N+  W+A+L +
Sbjct: 637 SMTRVFGISPTNEH---FSCMVDLLGRAGLLEQAKDLIEGMPFKPNATVWSALLGS 689


>gi|225457243|ref|XP_002281020.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 580

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/591 (35%), Positives = 328/591 (55%), Gaps = 35/591 (5%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLID--AYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           +K + A +++  L Q   L + LI+  A      V YAH +       +   W +I+  Y
Sbjct: 23  LKAIQAHMVRANLTQDTFLTSKLIESSAVTLSGHVAYAHRIFSCTHHPNLFMWNTIIRGY 82

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
           + ++ P   I+++  M  L  + P+ + F  ++KAC  L     G+++H+  V      +
Sbjct: 83  SISDSPITAIALYRDMF-LCGISPNSYTFGFVLKACCKLLRLCEGQELHSQIVKVGLDFE 141

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             + + L+ +YA CG  + A  +FD +   +S S                          
Sbjct: 142 TPLVNGLIKLYAACGCMDYACVMFDEMPEPDSAS-------------------------- 175

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                W+ +VSG  Q+   ++A   F EM+ E V   D   L+S+VG C +   L+LGK 
Sbjct: 176 -----WSTMVSGYAQNGQAVEALKLFREMQAENVS-SDAFTLASVVGVCGDLGALDLGKW 229

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           +H  +   G +  + +  A+V MY+KC  +  A  +F  M  +DV +W+++I G A HG 
Sbjct: 230 VHSYMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGH 289

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
            E+ L L+D M  +   PN VTF  ++ ACSH GLV KG ++F++M  +Y ITP ++HY 
Sbjct: 290 GEKALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYG 349

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++DL  R+G +  A   I+ MP EP+   W  LL ACK H   ++G  ++  +L L P 
Sbjct: 350 CMVDLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPS 409

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
            P +Y+L+SNVYAS   W  V +VR LM     KK+ G+S IE     H F  G+ SHP 
Sbjct: 410 SPENYVLVSNVYASLGRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPE 469

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
           +++I+ +L ++  ++K+ G+V  T  VLHD++++EKE  L  HSERLA+AYGLL +  G+
Sbjct: 470 REKIYGMLHQMARKLKQVGHVNSTVDVLHDIDEEEKEYALGLHSERLAIAYGLLHTPNGS 529

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +R+VKNLRVC DCH V+K+IS +  REI+VRD  R+HHF++  CSCND+W
Sbjct: 530 PIRIVKNLRVCRDCHEVIKLISEVYNREIIVRDRVRFHHFRERGCSCNDYW 580



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 172/369 (46%), Gaps = 50/369 (13%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C +       + LH+QI+K+GL    PL N LI  Y  C  + YA  + +EMP+ D 
Sbjct: 114 LKACCKLLRLCEGQELHSQIVKVGLDFETPLVNGLIKLYAACGCMDYACVMFDEMPEPDS 173

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW+++++ Y Q     + + +F  M A + +  D F  AS+V  CG LGA  LGK VH+
Sbjct: 174 ASWSTMVSGYAQNGQAVEALKLFREMQA-ENVSSDAFTLASVVGVCGDLGALDLGKWVHS 232

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                    D V+ ++LV MY+KCG  +NA  VF  +  ++  +W+ M++ YA  G  + 
Sbjct: 233 YMDKEGVKIDVVLGTALVGMYSKCGSLDNALKVFQGMAERDVTAWSTMIAGYAIHGHGEK 292

Query: 190 AMEIFE----QAPVRNLFLWTALV-----SGLVQSRNEI-----DAFYSFIEMRREG--V 233
           A+++F+       + N   +T+++     SGLV+  ++I       +    +++  G  V
Sbjct: 293 ALQLFDAMKRSKTIPNCVTFTSVLSACSHSGLVEKGHQIFETMWTEYKITPQIKHYGCMV 352

Query: 234 DI------------------VDPLVL--SSIVGACANFAVLELGKQIHGLVIAL---GYE 270
           D+                  ++P V+   +++GAC      +LG+ I   ++ L     E
Sbjct: 353 DLFCRAGMVGHAHKFIQTMPIEPNVVLWRTLLGACKTHGYKDLGEHISRKILKLDPSSPE 412

Query: 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI---------IVGTAQHGQAE 321
           + + +SN    +  + S +   + +      K    W+SI         I+G   H + E
Sbjct: 413 NYVLVSNVYASL-GRWSSVCQVRSLMKDKAPKKQHGWSSIEINFMVHKFIMGDESHPERE 471

Query: 322 ETLALYDEM 330
           +   +  +M
Sbjct: 472 KIYGMLHQM 480


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 201/604 (33%), Positives = 331/604 (54%), Gaps = 33/604 (5%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L+ L  C+     L++K +H    + G  +   + N  + AY KC  +  A  +   M  
Sbjct: 405 LNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEG 464

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           +   SW +++ A+ Q   P K++ +F  M+    + PD F   SL+ AC  L   R GK+
Sbjct: 465 KTVSSWNALIGAHAQNGFPGKSLDLFLVMMD-SGMDPDRFTIGSLLLACARLKFLRCGKE 523

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +H   + +    D+ +  SL+ +Y +C      + +FD  K++N                
Sbjct: 524 IHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFD--KMEN---------------- 565

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
                        ++L  W  +++G  Q+    +A  +F +M   G+     + ++ ++G
Sbjct: 566 -------------KSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIK-PQEIAVTGVLG 611

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           AC+  + L LGK++H   +        F++ A++DMYAKC  +  +++IF R+  KD   
Sbjct: 612 ACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAV 671

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W  II G   HG   + + L++ M + G +P+  TF+G++ AC+H GLV +G K    M 
Sbjct: 672 WNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEGLKYLGQMQ 731

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             YG+ P L+HY C++D+L R+G L EA  L+  MP EPD   W++LLS+C+++ + E+G
Sbjct: 732 NLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCRNYGDLEIG 791

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
             V+  LL L+P    +Y+LLSN+YA    W  V KVR+ M    + K+ G S+IE G  
Sbjct: 792 EEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGCSWIEIGGM 851

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            + F   + S     +I +   +L+ ++ + GY PDTS VLH++E++ K + L  HSE+L
Sbjct: 852 VYRFLVSDGSLSESKKIQQTWIKLEKKISKIGYKPDTSCVLHELEEEGKIKILKSHSEKL 911

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+++GLL +  GT LRV KNLR+C DCH  +K++S++ KR+I+VRD  R+HHFK+G C+C
Sbjct: 912 AISFGLLNTAKGTTLRVCKNLRICVDCHNAIKLVSKVVKRDIIVRDNKRFHHFKNGLCTC 971

Query: 607 NDFW 610
            DFW
Sbjct: 972 GDFW 975



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 141/544 (25%), Positives = 234/544 (43%), Gaps = 89/544 (16%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA  +K G      + N LI  YGKC  V+ A  + E M  R+ VSW S++ A ++ 
Sbjct: 215 EAVHALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSEN 274

Query: 83  NLPQKTISIFSTMLALDK--LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
               +   +F  +L  ++  L PD     +++ AC ++G  R+G  VH         ++ 
Sbjct: 275 GGFGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMGMVVHGLAFKLGITEEV 334

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V +SLVDMY+KCG    ARA+FD    KN VSW  ++  Y++ G  +   E+ +     
Sbjct: 335 TVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQ----- 389

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
                                     EM+RE    V+ + + +++ AC+    L   K+I
Sbjct: 390 --------------------------EMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEI 423

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG     G+     ++NA V  YAKCS +  A+ +F  M  K V SW ++I   AQ+G  
Sbjct: 424 HGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFP 483

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI-------EDYGIT- 372
            ++L L+  M+ +G+ P+  T   L+ AC+ +  +  G+++   M+       E  GI+ 
Sbjct: 484 GKSLDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEFIGISL 543

Query: 373 ----------------------PSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDE 407
                                  SL  +  ++   S++    EA +  + M     +P E
Sbjct: 544 MSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQE 603

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKP---EDPSSYILLSNVYASAAMWQHVSKVR 464
                +L AC       +G  V  H  +LK    ED      L ++YA     +   + +
Sbjct: 604 IAVTGVLGACSQVSALRLGKEV--HSFALKAHLSEDAFVTCALIDMYAKCGCME---QSQ 658

Query: 465 KLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD-EIFELLTELDAEMKRRGYVPDT 523
            +   +  K E  ++ I  G G H        H LK  E+FEL       M+ +G  PD+
Sbjct: 659 NIFDRVNEKDEAVWNVIIAGYGIH-------GHGLKAIELFEL-------MQNKGGRPDS 704

Query: 524 SSVL 527
            + L
Sbjct: 705 FTFL 708



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/432 (24%), Positives = 198/432 (45%), Gaps = 43/432 (9%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H    KLG+ +   + N+L+D Y KC  +  A  L +    ++ VSW +I+  Y++   
Sbjct: 321 VHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGD 380

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            +    +   M   +K++ +     +++ AC         K++H       F  D++V +
Sbjct: 381 FRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVAN 440

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           + V  YAKC   + A  VF  ++ K   SW A++ A+A++G    ++++           
Sbjct: 441 AFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKSLDL----------- 489

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                               F+ M   G+D  D   + S++ ACA    L  GK+IHG +
Sbjct: 490 --------------------FLVMMDSGMD-PDRFTIGSLLLACARLKFLRCGKEIHGFM 528

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           +  G E   FI  +++ +Y +CS ++  K IF +M  K +V W  +I G +Q+    E L
Sbjct: 529 LRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEAL 588

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH---YTC- 380
             + +M+S G+KP E+   G++ ACS V  +  G++     +  + +   L      TC 
Sbjct: 589 DTFRQMLSGGIKPQEIAVTGVLGACSQVSALRLGKE-----VHSFALKAHLSEDAFVTCA 643

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           L+D+ ++ G +++++N+   +  E DE  W  +++    H +      +   L+  K   
Sbjct: 644 LIDMYAKCGCMEQSQNIFDRVN-EKDEAVWNVIIAGYGIHGHGLKAIELF-ELMQNKGGR 701

Query: 441 PSSYILLSNVYA 452
           P S+  L  + A
Sbjct: 702 PDSFTFLGVLIA 713



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 161/343 (46%), Gaps = 31/343 (9%)

Query: 10  LRVCARHQIALTVKTLHAQI-IKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           LR C  H+     + +HA +     L     L   +I  Y  C     +  + +   ++D
Sbjct: 99  LRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKD 158

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
              + ++L+ Y++  L +  IS+F  +L+   L PD+F    + KAC  +    LG+ VH
Sbjct: 159 LFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAVH 218

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           A  + +    D  V ++L+ MY KCG   +A  VF++++ +N VSW +++ A + +G   
Sbjct: 219 ALALKAGGFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFG 278

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +   +F++  +                               EG+ + D   + +++ AC
Sbjct: 279 ECCGVFKRLLIS----------------------------EEEGL-VPDVATMVTVIPAC 309

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A    + +G  +HGL   LG    + ++N++VDMY+KC  +  A+ +F     K+VVSW 
Sbjct: 310 AAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWN 369

Query: 309 SIIVGTAQHGQAEETLALYDEMV-SAGVKPNEVTFVGLIYACS 350
           +II G ++ G       L  EM     V+ NEVT + ++ ACS
Sbjct: 370 TIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACS 412



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/294 (29%), Positives = 142/294 (48%), Gaps = 40/294 (13%)

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS-LVDMYAKCGLPNNARAVFDSIKLK 169
           L++ACG      +G++VHA    S    +DVV S+ ++ MY+ CG P+            
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPS------------ 145

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI--DAFYSFIE 227
                              D+  +F+ A  ++LFL+ AL+SG   SRN +  DA   F+E
Sbjct: 146 -------------------DSRGVFDAAKEKDLFLYNALLSGY--SRNALFRDAISLFLE 184

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           +        D   L  +  ACA  A +ELG+ +H L +  G  S  F+ NA++ MY KC 
Sbjct: 185 LLSATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCG 244

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV---SAGVKPNEVTFVG 344
            + +A  +F  MR +++VSW S++   +++G   E   ++  ++     G+ P+  T V 
Sbjct: 245 FVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVT 304

Query: 345 LIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           +I AC+ VG V  G  +   +    GIT  +     L+D+ S+ G+L EA  L 
Sbjct: 305 VIPACAAVGEVRMGM-VVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALF 357


>gi|297743898|emb|CBI36868.3| unnamed protein product [Vitis vinifera]
          Length = 541

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/554 (37%), Positives = 304/554 (54%), Gaps = 40/554 (7%)

Query: 65  PQRDHVSWASILTAYNQANL-----PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
           P  +   W +++ A+ QA           ISIF  M     +QPD   F  L+++  S  
Sbjct: 20  PTLESFLWNTLIRAHVQARAQPTGPTHSPISIFVRM-RFHGVQPDFHTFPFLLQSFASPS 78

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLS 179
              LG+ VHA  +      D  V++SL+ MY+                            
Sbjct: 79  LLHLGRSVHAQILRFGLAIDPFVQTSLISMYSS--------------------------- 111

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP- 238
               SG    A  +F   P RN+  W+ +++G V+     +A   F EM+  GV+ V P 
Sbjct: 112 ----SGLVDMARNLFAVMPERNVISWSCMINGYVRCGQYKEALALFREMQMLGVNDVRPN 167

Query: 239 -LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297
              +S ++ AC     LE GK  H  +   G    + +  A++DMYAKC  +  A  +F 
Sbjct: 168 EFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFS 227

Query: 298 RM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
            +   KDV++W+++I G A HG AEE + L+ +M++ GV+PN VTF+ +  AC H GLV 
Sbjct: 228 NLGPNKDVMAWSAMISGLAMHGLAEECVGLFSKMINQGVRPNAVTFLAVFCACVHGGLVS 287

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +G+   + M EDY I P++QHY C++DL  R+G + EA N++K+MP EPD   W ALLS 
Sbjct: 288 EGKDYLRRMTEDYSIIPTIQHYGCMVDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALLSG 347

Query: 417 CKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEP 476
            + H + E        L+ L+P +  +Y+LLSNVYA    W+ V  VR LM  M +KK P
Sbjct: 348 SRMHGDIETCELALKKLIELEPTNSGAYVLLSNVYAKRGRWEDVRHVRDLMETMGIKKVP 407

Query: 477 GYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKE 536
           G S IE G   H F+ G+ SHP   +I  +L E+   +K  GYV +T  VL D++++ KE
Sbjct: 408 GCSLIEVGGVLHEFFVGDDSHPETRQIHMMLEEILERLKVEGYVGNTKEVLLDLDEEGKE 467

Query: 537 RQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRY 596
             L  HSE+LA+AYG LK+ PGT +R+VKNLR+C DCH+ +KMIS++  REI+VRD  R+
Sbjct: 468 LALSLHSEKLALAYGFLKTSPGTPIRIVKNLRICRDCHVAIKMISKVFDREIIVRDCNRF 527

Query: 597 HHFKDGKCSCNDFW 610
           HHF  G CSC D+W
Sbjct: 528 HHFTQGLCSCRDYW 541



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 144/310 (46%), Gaps = 49/310 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +++HAQI++ GL     +  +LI  Y    LV  A +L   MP+R+ +SW+ ++  Y + 
Sbjct: 84  RSVHAQILRFGLAIDPFVQTSLISMYSSSGLVDMARNLFAVMPERNVISWSCMINGYVRC 143

Query: 83  NLPQKTISIFS--TMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
              ++ +++F    ML ++ ++P+ F  + ++ ACG LGA   GK  HA         D 
Sbjct: 144 GQYKEALALFREMQMLGVNDVRPNEFTMSGVLAACGRLGALEHGKWAHAYIDKCGMPVDV 203

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
           V+ ++L+DMYAKCG    A  VF ++   K+ ++W+AM+S  A  G  ++ + +F +   
Sbjct: 204 VLGTALIDMYAKCGSVEKATWVFSNLGPNKDVMAWSAMISGLAMHGLAEECVGLFSK--- 260

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK- 258
                                       M  +GV   + +   ++  AC +  ++  GK 
Sbjct: 261 ----------------------------MINQGVR-PNAVTFLAVFCACVHGGLVSEGKD 291

Query: 259 ------QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSII 311
                 + + ++  + +  C+      VD+Y +   I  A ++   M    DV+ W +++
Sbjct: 292 YLRRMTEDYSIIPTIQHYGCM------VDLYGRAGRIKEAWNVVKSMPMEPDVLVWGALL 345

Query: 312 VGTAQHGQAE 321
            G+  HG  E
Sbjct: 346 SGSRMHGDIE 355



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 33/204 (16%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM-PQRD 68
           L  C R       K  HA I K G+     L   LID Y KC  V+ A  +   + P +D
Sbjct: 175 LAACGRLGALEHGKWAHAYIDKCGMPVDVVLGTALIDMYAKCGSVEKATWVFSNLGPNKD 234

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            ++W+++++      L ++ + +FS M+    ++P+   F ++  AC   G    GK   
Sbjct: 235 VMAWSAMISGLAMHGLAEECVGLFSKMIN-QGVRPNAVTFLAVFCACVHGGLVSEGK--- 290

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
                      D ++    D            ++  +I+      +  M+  Y R+GR K
Sbjct: 291 -----------DYLRRMTEDY-----------SIIPTIQ-----HYGCMVDLYGRAGRIK 323

Query: 189 DAMEIFEQAPVR-NLFLWTALVSG 211
           +A  + +  P+  ++ +W AL+SG
Sbjct: 324 EAWNVVKSMPMEPDVLVWGALLSG 347


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/556 (37%), Positives = 325/556 (58%), Gaps = 13/556 (2%)

Query: 57  AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116
           AH L +E+P+ D  S+  +L+ Y +    +K  S F  M   D    +  +         
Sbjct: 112 AHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMI--------- 162

Query: 117 SLGATRLGKQVHACFVLSPFCD-DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWT 175
             G  R G+   A  +     + ++V  ++++  Y +CG    A   F    ++  V+WT
Sbjct: 163 -TGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGVVAWT 221

Query: 176 AMLSAYARSGRKKDAMEIFEQAPV-RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
           AM++ Y ++ + + A  +F+   V +NL  W A++SG V++    D    F  M  EG+ 
Sbjct: 222 AMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLEEGIR 281

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
                + S+++G C+  + L+LG+QIH +V      + +    +++ MY KC ++  A  
Sbjct: 282 PNSSGLSSALLG-CSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGDAWK 340

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL 354
           +F  M++KDVV+W ++I G AQHG A++ L L+ EM+   ++P+ +TFV ++ AC+H GL
Sbjct: 341 LFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGL 400

Query: 355 VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           V  G   F+SM+ DY + P   HYTC++DLL R+G L+EA  LI++MPF P    +  LL
Sbjct: 401 VNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLL 460

Query: 415 SACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKK 474
            AC+ H+N E+    A  LL L  ++ + Y+ L+N+YAS   W+ V++VRK M    V K
Sbjct: 461 GACRVHKNVELAEFAAEKLLQLNSQNAAGYVQLANIYASKNRWEDVARVRKRMKESNVVK 520

Query: 475 EPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE 534
            PGYS+IE     H F + +  HP  D I + L EL+ +MK  GY P+    LH++E+++
Sbjct: 521 VPGYSWIEIRNKVHHFRSSDRIHPELDSIHKKLKELEKKMKLAGYKPELEFALHNVEEEQ 580

Query: 535 KERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDAT 594
           KE+ L WHSE+LAVA+G +K   G+ ++V KNLR+CGDCH  +K IS I KREI+VRD T
Sbjct: 581 KEKLLLWHSEKLAVAFGCIKLPQGSQIQVFKNLRICGDCHKAIKFISEIEKREIIVRDTT 640

Query: 595 RYHHFKDGKCSCNDFW 610
           R+HHFKDG CSC D+W
Sbjct: 641 RFHHFKDGSCSCGDYW 656



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 67/338 (19%), Positives = 138/338 (40%), Gaps = 57/338 (16%)

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKC---GLPNNARAVFDSIKLKNSVSWTA------- 176
           V + ++  P   D +    L  + A+C   G  + A  VF  ++ KN+++W +       
Sbjct: 47  VRSDYLTKPSDQDQIF--PLNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISK 104

Query: 177 -------------------------MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSG 211
                                    MLS Y R+   + A   F++ P ++   W  +++G
Sbjct: 105 DPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWNTMITG 164

Query: 212 LVQSRNEIDA----FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267
             + R E++     FYS +E         + +  ++++        LE       +    
Sbjct: 165 YAR-RGEMEKARELFYSMMEK--------NEVSWNAMISGYIECGDLEKASHFFKVAPVR 215

Query: 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQAEETLAL 326
           G    +    A++  Y K   +  A+ +F  M   K++V+W ++I G  ++ + E+ L L
Sbjct: 216 G----VVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKL 271

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
           +  M+  G++PN       +  CS +  +  GR++ + ++    +   +   T L+ +  
Sbjct: 272 FRAMLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQ-IVSKSTLCNDVTALTSLISMYC 330

Query: 387 RSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           + G L +A  L + M  + D   W A++S    H N +
Sbjct: 331 KCGELGDAWKLFEVMK-KKDVVAWNAMISGYAQHGNAD 367



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 43  TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQ 102
           +LI  Y KC  +  A  L E M ++D V+W ++++ Y Q     K + +F  M+  +K++
Sbjct: 324 SLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMID-NKIR 382

Query: 103 PDHFVFASLVKACGSLGATRLG 124
           PD   F +++ AC   G   +G
Sbjct: 383 PDWITFVAVLLACNHAGLVNIG 404


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/597 (35%), Positives = 336/597 (56%), Gaps = 37/597 (6%)

Query: 19  ALTVKTLHAQIIKLGLHQYGPLPN-----TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWA 73
           A T+  LH Q +   +H++G   N      L+D Y KC  +  A  + ++MP+R+ VSW 
Sbjct: 21  AATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWN 80

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           S++  +   NL  + + +F  +L    + P+    +S++ AC ++G    G+QVH   V 
Sbjct: 81  SMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVK 140

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
                   V +SL+DMY KC   +    +F  +  ++ V+W                   
Sbjct: 141 FGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTW------------------- 181

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
                         LV G VQ+    +A   F  MRREG+ + D    S+++ + A+ A 
Sbjct: 182 ------------NVLVMGFVQNDKFEEACNYFWVMRREGI-LPDEASFSTVLHSSASLAA 228

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L  G  IH  +I LGY   + I  +++ MYAKC  ++ A  +F  +   +V+SWT++I  
Sbjct: 229 LHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISA 288

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
              HG A + + L++ M+S G++P+ VTFV ++ ACSH G V +G   F SM + + + P
Sbjct: 289 YQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNP 348

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
             +HY C++DLL R+G LDEA+  I++MP +P    W ALL AC+ + N +MG   A  L
Sbjct: 349 GPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERL 408

Query: 434 LSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAG 493
             ++P +P +Y+LL+N+   +   +  ++VR+LM V  V+KEPG S+I+    + +F A 
Sbjct: 409 FEMEPYNPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKNMTFVFTAH 468

Query: 494 ETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLL 553
           + SH   DEI+++L +L+  +K++GYV +T  V + +E+ E+E+ L++HSE+LA+A+GLL
Sbjct: 469 DRSHSSSDEIYKMLEKLEKLVKKKGYVAETEFVTNHLEENEEEQGLWYHSEKLALAFGLL 528

Query: 554 KSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
                + +R+ KNLR CG CH VMK+ S+I  REI+VRD  R+H F DG CSC D+W
Sbjct: 529 TLPIDSPIRIKKNLRTCGHCHTVMKLASKIFDREIIVRDINRFHRFADGFCSCGDYW 585



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 177/376 (47%), Gaps = 35/376 (9%)

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162
           P+ F F+S++ A  +      G+Q+H+      F  +  V ++LVDMYAKC   ++A  V
Sbjct: 8   PNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRV 67

Query: 163 FDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
           FD +  +N VSW +M+  +  +     A+ +F+                           
Sbjct: 68  FDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFK--------------------------- 100

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
               ++ RE   I + + +SS++ ACAN   L  G+Q+HG+V+  G     ++ N+++DM
Sbjct: 101 ----DVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDM 156

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           Y KC        +F  +  +DVV+W  +++G  Q+ + EE    +  M   G+ P+E +F
Sbjct: 157 YFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASF 216

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
             ++++ + +  + +G  +   +I+  G   ++     L+ + ++ G L +A  + + + 
Sbjct: 217 STVLHSSASLAALHQGTAIHDQIIK-LGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIE 275

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRVANHLLS--LKPEDPSSYILLSNVYASAAMWQHV 460
            + +  +W A++SA + H        +  H+LS  ++P   +   +LS    +  + + +
Sbjct: 276 -DHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGL 334

Query: 461 SKVRKLMSVMEVKKEP 476
           +    +  + ++   P
Sbjct: 335 AHFNSMKKIHDMNPGP 350


>gi|242082896|ref|XP_002441873.1| hypothetical protein SORBIDRAFT_08g003980 [Sorghum bicolor]
 gi|241942566|gb|EES15711.1| hypothetical protein SORBIDRAFT_08g003980 [Sorghum bicolor]
          Length = 599

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 225/605 (37%), Positives = 340/605 (56%), Gaps = 47/605 (7%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           +V   HA+++K G+       N L+ AY +C  + YA  L + MP RD VSW ++++ Y 
Sbjct: 27  SVAATHAKVVKAGVASPLSSCNHLLAAYCRCGAMGYARDLFDGMPDRDVVSWTTLMSGYA 86

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
            A  P+  +S+   M     ++P+   F++   AC  L    LG+QVHA   ++    D 
Sbjct: 87  AAARPRDAMSLLRAM-GSSGVRPNAVTFSTAACACARLADAGLGRQVHAQAEVAGCARDA 145

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKL--KNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           VV ++L+DMY K G   +ARAVFD++    +N+VSW AML+ YA++    +A+ +F    
Sbjct: 146 VVATALLDMYGKAGGVEDARAVFDAMGAPSRNAVSWGAMLAVYAQNALGDEAIRLFA--- 202

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP--LVLSSIVGACANFAVLEL 256
                                       E+R  G   V P   +L+++V ACA  A L +
Sbjct: 203 ----------------------------ELRTRGCGGVAPNHFILATVVSACAGMARLGI 234

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           G+ +HG V+ LGY +   IS A+VDMY+KC     ++ +F R+ +  VV++TSIIV  A+
Sbjct: 235 GRCVHGSVLRLGYGNNDVISVALVDMYSKCGCYEYSRKVFDRIEQPSVVAYTSIIVAAAK 294

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           +G+    LAL+DEMV  GV+PN+VT +G+++ACSH GLV  G +L +SM   YG+ P   
Sbjct: 295 YGRWRCALALFDEMVDQGVQPNDVTLLGVMHACSHSGLVDTGLQLLRSMQSKYGVAPCPS 354

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP--TWAALLSACKHHRNTEMGTRVANHL- 433
           HYT  +D+L R+G L+EA  L +    E ++    W +LLSAC+ H+  ++ T     + 
Sbjct: 355 HYTSAVDMLGRAGQLEEAFELAEEAQLEGNDALLLWNSLLSACRTHKRLDLATMAGQRVS 414

Query: 434 -LSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYA 492
             S + +  +  +++SN Y SA    + + VR  M +  ++K+PG S+IE     ++FYA
Sbjct: 415 EFSNQQDVAAGLVVMSNAYVSAGQIDNAAAVRSSMRLRGIRKDPGCSWIEVKDTPYVFYA 474

Query: 493 GETS--HPLKDEIFELLTELDAEMKRRGY-----VPDTSSVLHDMEQKEKERQLFWHSER 545
           G  S       E+  LL EL+++M+ RGY         S    D E++ K   +  HSE 
Sbjct: 475 GAISCAGAWAGEVVMLLDELESKMRERGYRGRLGSARVSDAHEDDEEEGKGVMVGVHSEI 534

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+A+GLL    G  +RV+KNLR+C DCH V K+IS I +RE VVRD  R+HHFK G CS
Sbjct: 535 LALAFGLLVVPKGMTIRVMKNLRMCSDCHEVFKLISGIVEREFVVRDLNRFHHFKMGSCS 594

Query: 606 CNDFW 610
           CND+W
Sbjct: 595 CNDYW 599



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/188 (31%), Positives = 104/188 (55%), Gaps = 4/188 (2%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM--PQRDHV 70
           CAR   A   + +HAQ    G  +   +   L+D YGK   V+ A  + + M  P R+ V
Sbjct: 120 CARLADAGLGRQVHAQAEVAGCARDAVVATALLDMYGKAGGVEDARAVFDAMGAPSRNAV 179

Query: 71  SWASILTAYNQANLPQKTISIFSTML--ALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
           SW ++L  Y Q  L  + I +F+ +       + P+HF+ A++V AC  +    +G+ VH
Sbjct: 180 SWGAMLAVYAQNALGDEAIRLFAELRTRGCGGVAPNHFILATVVSACAGMARLGIGRCVH 239

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              +   + ++DV+  +LVDMY+KCG    +R VFD I+  + V++T+++ A A+ GR +
Sbjct: 240 GSVLRLGYGNNDVISVALVDMYSKCGCYEYSRKVFDRIEQPSVVAYTSIIVAAAKYGRWR 299

Query: 189 DAMEIFEQ 196
            A+ +F++
Sbjct: 300 CALALFDE 307


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 209/604 (34%), Positives = 331/604 (54%), Gaps = 33/604 (5%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L+ + VC    +  ++K LH   +K        L N  + +Y KC  + YA  +   +  
Sbjct: 383 LNAVPVCFDESVLPSLKELHCYSLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRS 442

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           +   SW +++  Y Q++ P+ ++     M     L PD+F   SL+ AC  L + RLGK+
Sbjct: 443 KTLNSWNALIGGYAQSSDPRLSLDAHLQMKN-SGLLPDNFTVCSLLSACSKLKSLRLGKE 501

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           VH   + +    D  V  S++ +Y  CG     + +FD+++  + VSW  +++ + ++G 
Sbjct: 502 VHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGF 561

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
            + A+ +F Q     + L+     G+                            + ++ G
Sbjct: 562 PERALGLFRQ-----MVLYGIQPCGIS---------------------------MMTVFG 589

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           AC+    L LG++ H   +    E   FI+ +I+DMYAK   I  +  +F  ++ K   S
Sbjct: 590 ACSLLPSLRLGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAAS 649

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W ++I+G   HG+A+E + L++EM   G  P+++TF+G++ AC+H GL+ +G +    M 
Sbjct: 650 WNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMK 709

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             +G+ P+L+HY C++D+L R+G LD A  +   M  EPD   W +LLS C+ H+N EMG
Sbjct: 710 SSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMG 769

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
            +VA  L  L+PE P +Y+LLSN+YA    W  V +VR+ M  M ++K+ G S+IE    
Sbjct: 770 EKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWIELNGK 829

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
              F  GE      +EI  L + L+ ++ + GY PDTSSV HD+ ++EK  QL  HSE+L
Sbjct: 830 VFSFVVGERFLDGFEEIKSLWSILEMKIWKMGYRPDTSSVQHDLSEEEKIEQLRGHSEKL 889

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+ YGL+K+  GT LRV KNLR+C DCH   K+IS++ +REIVVRD  R+HHF  G CSC
Sbjct: 890 AITYGLIKTSEGTTLRVYKNLRICVDCHNAAKLISKVMEREIVVRDNKRFHHFNKGFCSC 949

Query: 607 NDFW 610
            D+W
Sbjct: 950 GDYW 953



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/416 (22%), Positives = 184/416 (44%), Gaps = 43/416 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VCAR +     K +H   +KL L +   + N L+D Y K   +  +  + +    ++ 
Sbjct: 283 LPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNV 342

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLA-LDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
           VSW +++  ++       T  +   MLA  + ++ D     + V  C         K++H
Sbjct: 343 VSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELH 402

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              +   F  D+++ ++ V  YAKCG                S+S+              
Sbjct: 403 CYSLKQEFVYDELLANAFVASYAKCG----------------SLSY-------------- 432

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
            A  +F     + L  W AL+ G  QS +   +  + ++M+  G+ + D   + S++ AC
Sbjct: 433 -AQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGL-LPDNFTVCSLLSAC 490

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           +    L LGK++HG +I    E  LF+  +++ +Y  C ++   + +F  M    +VSW 
Sbjct: 491 SKLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDAMEDNSLVSWN 550

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK----LFKS 364
           ++I G  Q+G  E  L L+ +MV  G++P  ++ + +  ACS +  +  GR+      K 
Sbjct: 551 TVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLGREAHAYALKH 610

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           ++ED            ++D+ +++G + ++  +   +  E    +W A++     H
Sbjct: 611 LLEDNAFIA-----CSIIDMYAKNGAITQSSKVFNGLK-EKSAASWNAMIMGYGMH 660



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/312 (23%), Positives = 137/312 (43%), Gaps = 46/312 (14%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   +I  Y  C     +    + +  ++   W +++++Y++  L  + + +F  M++  
Sbjct: 122 LCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKT 181

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            L PD+F F  ++KAC  +    +G  VH   V +   +D  V ++LV  Y   G  +  
Sbjct: 182 HLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVS-- 239

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
                                        DA+++F+  P RNL  W +++          
Sbjct: 240 -----------------------------DALKLFDIMPERNLVSWNSMIR--------- 261

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
                F +   +G  + D   + +++  CA    + +GK +HG  + L  +  L ++NA+
Sbjct: 262 ----VFSDNGDDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNAL 317

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV--SAGVKP 337
           +DMY+K   II ++ IF     K+VVSW +++ G +  G    T  L  +M+  S  VK 
Sbjct: 318 MDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKA 377

Query: 338 NEVTFVGLIYAC 349
           +EVT +  +  C
Sbjct: 378 DEVTILNAVPVC 389



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 161/378 (42%), Gaps = 44/378 (11%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
            +H  ++K GL +   + N L+  YG    V  A  L + MP+R+ VSW S+        
Sbjct: 208 AVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSM-------- 259

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
                I +FS         PD     +++  C       +GK VH   V      + VV 
Sbjct: 260 -----IRVFSDNGDDGAFMPDVATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVN 314

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           ++L+DMY+K G   +++ +F     KN VSW  M+  ++  G      ++  Q       
Sbjct: 315 NALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQ------- 367

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
                   ++    ++ A               D + + + V  C + +VL   K++H  
Sbjct: 368 --------MLAGSEDVKA---------------DEVTILNAVPVCFDESVLPSLKELHCY 404

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
            +   +     ++NA V  YAKC  +  A+ +F  +R K + SW ++I G AQ      +
Sbjct: 405 SLKQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLS 464

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           L  + +M ++G+ P+  T   L+ ACS +  +  G+++   +I ++ +   L  Y  +L 
Sbjct: 465 LDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNW-LERDLFVYLSVLS 523

Query: 384 LLSRSGHLDEAENLIKAM 401
           L    G L   + L  AM
Sbjct: 524 LYIHCGELCTVQVLFDAM 541



 Score = 78.6 bits (192), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 123/292 (42%), Gaps = 49/292 (16%)

Query: 111 LVKACGSLGATRLGKQVHACFVLSP-FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           L++A G      +G+++H     S     DDV+ + ++ MYA CG P+            
Sbjct: 90  LLQASGKRKDIEMGRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPD------------ 137

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI--DAFYSFIE 227
                              D+   F+    +NLF W A++S    SRNE+  +    FI+
Sbjct: 138 -------------------DSRSAFDALRSKNLFQWNAVISSY--SRNELYHEVLEMFIK 176

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M  +   + D      ++ ACA  + + +G  +HGLV+  G    LF+ NA+V  Y    
Sbjct: 177 MISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHG 236

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            +  A  +F  M  +++VSW S+I   + +G                  P+  T V ++ 
Sbjct: 237 FVSDALKLFDIMPERNLVSWNSMIRVFSDNGD------------DGAFMPDVATVVTVLP 284

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
            C+    +G G+ +    ++   +   L     L+D+ S+ G + +++ + K
Sbjct: 285 VCAREREIGVGKGVHGWAVK-LSLDKELVVNNALMDMYSKWGCIIDSQMIFK 335


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/588 (36%), Positives = 330/588 (56%), Gaps = 35/588 (5%)

Query: 25  LHAQIIKLGLHQYGPLPN-TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           +H+  I+ G     P  +   +D Y K   ++ A HL  EMP R+ V+W +++T      
Sbjct: 140 IHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDG 199

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
            P +TI  +  +     L P+     +   AC       LG+Q H   V   F  D  V 
Sbjct: 200 RPLETIEAYFGLREAGGL-PNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVL 258

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           +S+VD Y KC     ARAVFD + ++NSVS                              
Sbjct: 259 NSMVDFYGKCRCAGKARAVFDGMGVRNSVS------------------------------ 288

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            W ++V+   Q+  E +AF +++  RR G +  D  ++SS +  CA    L LG+ +H +
Sbjct: 289 -WCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTD-FMVSSALTTCAGLLGLHLGRALHAV 346

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
            +    ++ +F+++A+VDMY KC  +  A+ IF    ++++V+W ++I G A  G A+  
Sbjct: 347 AVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNA 406

Query: 324 LALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
           L ++D+M+ +G   PN +T V +I +CS  GL   G +LF++M E +GI P  +HY C++
Sbjct: 407 LLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVV 466

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G  ++A  +I+ MP  P    W ALL ACK H  TE+G   A  L  L P+D  
Sbjct: 467 DLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSG 526

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +++LLSN++ASA  W   + +RK M  + +KK+PG S++ +    H+F A +T H + +E
Sbjct: 527 NHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNE 586

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I  LL++L  +M+  GY+PDT   L+D+E++EKE ++F HSE+LA+A+GL+   PG  +R
Sbjct: 587 IQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPGVPIR 646

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++KNLR+C DCH   K IS I  REI+VRD  R+HHFK  +CSC D+W
Sbjct: 647 IMKNLRICVDCHRAFKFISGIVGREIIVRDNNRFHHFKQYQCSCGDYW 694



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 5/175 (2%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +  H  ++K G      + N+++D YGKC     A  + + M  R+ VSW S++ AY Q 
Sbjct: 240 EQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQN 299

Query: 83  NLPQKTISIFSTMLALDKL--QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
              ++    F+  L   +   +P  F+ +S +  C  L    LG+ +HA  V S    + 
Sbjct: 300 GAEEEA---FAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANI 356

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
            V S+LVDMY KCG   +A  +F     +N V+W AM+  YA  G  ++A+ +F+
Sbjct: 357 FVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFD 411



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 112/254 (44%), Gaps = 6/254 (2%)

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           +TA +SG  Q    + A  +F  M R G+   D    S+   A +      +G QIH L 
Sbjct: 85  YTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPRSTIGPQIHSLA 144

Query: 265 IALGYESC-LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           I  GY     F+S A +DMY K   +  A+ +FG M  ++VV+W +++      G+  ET
Sbjct: 145 IRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDGRPLET 204

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           +  Y  +  AG  PN V+      AC+    +  G + F   +   G    +     ++D
Sbjct: 205 IEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQ-FHGFVVKCGFEMDVSVLNSMVD 263

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP-EDPS 442
              +     +A  +   M    +  +W ++++A  + +N       A +L + +  E+P+
Sbjct: 264 FYGKCRCAGKARAVFDGMGVR-NSVSWCSMVAA--YAQNGAEEEAFAAYLGARRSGEEPT 320

Query: 443 SYILLSNVYASAAM 456
            +++ S +   A +
Sbjct: 321 DFMVSSALTTCAGL 334



 Score = 70.1 bits (170), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 87/185 (47%), Gaps = 12/185 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHA  ++  +     + + L+D YGKC  V+ A  +  E PQR+ V+W +++  Y   
Sbjct: 341 RALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHI 400

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC----FVLSPFCD 138
              Q  + +F  M+   +  P++    +++ +C   G T+ G ++       F + P  +
Sbjct: 401 GDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTE 460

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGRKK----DAMEI 193
                + +VD+  + G+   A  V   + ++ S+S W A+L A    G+ +     A ++
Sbjct: 461 H---YACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKL 517

Query: 194 FEQAP 198
           FE  P
Sbjct: 518 FELDP 522



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 2/168 (1%)

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYES-CLFISNAIVDMYAKCSDIIAAKDI 295
           DP +L++   +        LG+  H   + L   +   FI   +V++Y+K     AA   
Sbjct: 14  DPQLLAAAFESAIASRSPRLGRAAHARALRLIAPALSPFICAHLVNLYSKLDLPAAAAAA 73

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
                   VVS+T+ I G AQHG+    L+ +  M+  G++PN+ TF     A +     
Sbjct: 74  LASDPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAAASAPPR 133

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTC-LLDLLSRSGHLDEAENLIKAMP 402
                   S+   +G  P     +C  LD+  ++G L  A +L   MP
Sbjct: 134 STIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMP 181


>gi|312190418|gb|ADQ43217.1| pentatricopeptide repeat [Eutrema parvulum]
          Length = 616

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/608 (34%), Positives = 338/608 (55%), Gaps = 5/608 (0%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           + H L    +    + +K +HA+++K GL Q        +          YAH +     
Sbjct: 11  FEHNLSCLQKCPTEVELKQIHARMLKSGLLQDPYAMTKFLSFCLSSSFSSYAHDVFFNGF 70

Query: 66  QR-DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
            R D   W  ++   + ++ P +++ ++  ML       + + F  L+KAC +L A +  
Sbjct: 71  DRPDTFLWNLMIRGLSCSDQPDRSLLLYHRMLCCSAPH-NAYTFPFLLKACSNLSAFQET 129

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
            Q+HA      +  D    +SL++ YA  G   +A  +FD I+  ++VSW +++  Y ++
Sbjct: 130 TQIHAHITKFGYGHDIYAVNSLINSYAVTGNFKHAHLLFDRIQEPDAVSWNSVIKGYVKA 189

Query: 185 GRKKDAMEIFEQAPVRNLFL-WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           G    A+ +F + P +N  + WT ++SG VQ+    +A   F EM+   V   D + L+S
Sbjct: 190 GEMDMALTLFRKMPEKNNAISWTTMISGYVQAGMNKEALQLFHEMQNSNVP-PDNVSLAS 248

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
            + AC+    LE GK IH             +   ++DMYAKC ++  A  +F  M+ K 
Sbjct: 249 ALSACSQLGALEQGKWIHSYANKTRTRIDSVLCCVLIDMYAKCGEMEEALGVFKNMKTKS 308

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           V  WT++I G A HG   E ++ + EM + GVKPN +TF  ++ ACS+ GLV +G+ +F 
Sbjct: 309 VQVWTALISGYAYHGLGREAISKFLEMQNMGVKPNAITFTAVLTACSYTGLVEEGKSVFN 368

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
           ++  DY + P+++HY C++DLL R+G L+EA   I+ MP +P+   W +LL AC+ H+N 
Sbjct: 369 TIERDYNLKPTIEHYGCMVDLLGRAGLLNEANRFIQKMPLKPNAVIWGSLLKACQIHKNI 428

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           E+G ++   L+ +       Y+ ++N++A    W   ++ R+LM    V K PG S I  
Sbjct: 429 ELGEKIGEILIEMDSNHGGRYVHMANIHAMGKKWDKAAETRRLMREQGVVKVPGCSAISL 488

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDM-EQKEKERQLFWH 542
              +H F AG+ SH    EI      +  +++  GYVP+   +L D+ + +EKE  +  H
Sbjct: 489 EGTTHEFLAGDRSHAEIQEIRTKWRFVRRKLEENGYVPELEDMLLDLVDDEEKEAIVHQH 548

Query: 543 SERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           SE+LA+ YGL+K+ PGT +R++KNLRVC DCH VM +IS+I KR+IV+RD TR+HHFKDG
Sbjct: 549 SEKLAITYGLMKTKPGTTIRIMKNLRVCKDCHKVMNLISKIYKRDIVMRDRTRFHHFKDG 608

Query: 603 KCSCNDFW 610
           KCSC D+W
Sbjct: 609 KCSCGDYW 616


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/579 (36%), Positives = 319/579 (55%), Gaps = 35/579 (6%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLG-LHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           Y   L+ C R       + +HA ++    L  +  L N +++ Y KC  +  A  + +EM
Sbjct: 90  YSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEM 149

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           P +D V+W +++  ++Q N P+  + +F  ML L  LQP+HF  +SL+KA GS      G
Sbjct: 150 PTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLG-LQPNHFTLSSLLKASGSEHGLDPG 208

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
            Q+HA  +   +     V S+LVDMYA+C                               
Sbjct: 209 TQLHAFCLKYGYQSSVYVGSALVDMYARC------------------------------- 237

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G    A   F+  P ++   W AL+SG  +      A +   +M+R+          SS+
Sbjct: 238 GHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTH-FTYSSV 296

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
             ACA+   LE GK +H  +I  G +   FI N ++DMYAK   I  AK +F R+ + DV
Sbjct: 297 FSACASIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKPDV 356

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           VSW +++ G AQHG  +ETL  +++M+  G++PNE++F+ ++ ACSH GL+ +G   F+ 
Sbjct: 357 VSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLTACSHSGLLDEGLYYFE- 415

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE 424
           +++ Y + P + HY   +DLL R G LD AE  I+ MP EP    W ALL AC+ H+N E
Sbjct: 416 LMKKYKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTAAVWGALLGACRMHKNME 475

Query: 425 MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
           +G   A     L P D    +LLSN+YASA  W+ V+KVRK+M    VKK+P  S++E  
Sbjct: 476 LGVYAAERAFELDPHDSGPRMLLSNIYASAGRWRDVAKVRKMMKESGVKKQPACSWVEIE 535

Query: 485 KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
              H+F A + +HP   EI     E+  ++K  GYVPDTS VL  ++Q+E+E +L +HSE
Sbjct: 536 NAVHLFVANDETHPQIKEIRGKWEEISGKIKEIGYVPDTSHVLLFVDQQEREEKLQYHSE 595

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRI 583
           +LA+A+ LL +  G+ +R+ KN+RVCGDCH  +K +S+I
Sbjct: 596 KLALAFALLNTPTGSPIRIKKNIRVCGDCHAAIKFVSKI 634



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 104/355 (29%), Positives = 179/355 (50%), Gaps = 41/355 (11%)

Query: 73  ASILTAYNQANLPQKTISIFSTML-ALDKLQ-----PDHFVFASLVKACGSLGATRLGKQ 126
           A     +   +L +K+ S   T L ALD +Q     PD+ +++ L+K C  LG    G+ 
Sbjct: 49  AXSFCVFQDKDLLRKSQSDGGTGLYALDLIQRGSLVPDYNLYSKLLKECTRLGKVEQGRI 108

Query: 127 VHACFVLSPFCDDDVV-KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           VHA  V S F D+ +V ++ +V+MYAKCG  ++AR                         
Sbjct: 109 VHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDAR------------------------- 143

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
                  +F++ P +++  WTAL++G  Q+    DA   F +M R G+   +   LSS++
Sbjct: 144 ------RMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQ-PNHFTLSSLL 196

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            A  +   L+ G Q+H   +  GY+S +++ +A+VDMYA+C  + AA+  F  M  K  V
Sbjct: 197 KASGSEHGLDPGTQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEV 256

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SW ++I G A+ G+ E  L L  +M     +P   T+  +  AC+ +G + +G+ +   M
Sbjct: 257 SWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHM 316

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           I+  G+         LLD+ +++G +D+A+ +   +  +PD  +W  +L+ C  H
Sbjct: 317 IKS-GLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRL-VKPDVVSWNTMLTGCAQH 369


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/613 (35%), Positives = 343/613 (55%), Gaps = 60/613 (9%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H   ++ G   +  + N+L+  Y K   +  A  + +    R+ V+W ++++ Y  A  
Sbjct: 128 IHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGH 187

Query: 85  PQKTISIFSTMLAL----DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF--CD 138
            + ++ +F  M       +  QPD F FASL+KACGSLGA R G QVHA  V+       
Sbjct: 188 GRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTAS 247

Query: 139 DDVVKSSLVDMYAKCG--LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           + ++  +L+DMY KC   LP  A  VF+ ++ KN++ WT ++  +A+ G+ K+AME+F +
Sbjct: 248 NAILAGALLDMYVKCRCLLPM-AMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGR 306

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
                   W++ V                           D  VLSS+VG  A+FA++E 
Sbjct: 307 -------FWSSGVR-------------------------ADGHVLSSVVGVFADFALVEQ 334

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           G+Q+H   +       + ++N+++DMY KC     A   F  +  ++VVSWT++I G  +
Sbjct: 335 GRQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGK 394

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           HG  +E + +++EM + GV+P+EV ++ L+ ACSH GLV + R+ F ++  D  + P  +
Sbjct: 395 HGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECRRYFSAIRHDRRLRPRAE 454

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
           HY C++DLL R+G L EA++L+  MP  P    W  LLSAC+ H+N  +G      LL++
Sbjct: 455 HYACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLLSACRVHKNVTVGREAGETLLAI 514

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFY-AGET 495
             ++P +Y++LSN++A A  W+   +VR  M    ++K+ G S++E GK +H FY  G+ 
Sbjct: 515 DGDNPVNYVMLSNIFAEAGDWRECQRVRGAMRRRGLRKQGGCSWVEVGKEAHFFYGGGDD 574

Query: 496 SHPLKDEIFELLTELDAEMKRR-GYVPD-----TSSVLHDMEQKEKERQLFWHSERLAVA 549
           SHP   +I  +L +++  M+ R GY P      + + LHD++++ +   L  HSERLAV 
Sbjct: 575 SHPRAADICCVLRDVERTMRERLGYSPGSSSSSSEAALHDVDEESRAESLRAHSERLAVG 634

Query: 550 YGLL--------KSVPGT----VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYH 597
             LL        + + GT    V+RV KNLRVCGDCH   K +S +  R +VVRDA R+H
Sbjct: 635 LWLLLHHDHDHGEGMGGTKRKEVIRVYKNLRVCGDCHEFFKGLSSVVGRVLVVRDANRFH 694

Query: 598 HFKDGKCSCNDFW 610
            F+DG CSC D+W
Sbjct: 695 RFEDGVCSCKDYW 707



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 118/265 (44%), Gaps = 36/265 (13%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
           + A +++A  +  A   G Q+H   +   F  D ++ ++L+DMYAKCG            
Sbjct: 6   MIADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCG------------ 53

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
                                + A E+F   P RN+  WTAL+ G ++  +  +      
Sbjct: 54  -------------------ELRMAGEVFGGMPERNVVSWTALMVGFLRHGDARECLRLLG 94

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            MR       +   LS+ + AC     +  G  IHG  +  G+E    ++N++V +Y+K 
Sbjct: 95  AMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKG 154

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS-----AGVKPNEVT 341
             I  A+ +F     +++V+W ++I G A  G   ++L ++ EM          +P+E T
Sbjct: 155 GRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFT 214

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMI 366
           F  L+ AC  +G   +G ++  +M+
Sbjct: 215 FASLLKACGSLGAAREGAQVHAAMV 239



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 57/181 (31%), Positives = 95/181 (52%), Gaps = 3/181 (1%)

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
           +++ ++ A A  + +  G Q+HG ++ LG+ S   + N ++DMYAKC ++  A ++FG M
Sbjct: 6   MIADMLRASAASSAIHGGAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGM 65

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKG 358
             ++VVSWT+++VG  +HG A E L L   M S + V PNE T    + AC  VG +  G
Sbjct: 66  PERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAG 125

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
             +  + +   G          L+ L S+ G + +A  +     F  +  TW A++S   
Sbjct: 126 VWIHGACVR-AGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFR-NLVTWNAMISGYA 183

Query: 419 H 419
           H
Sbjct: 184 H 184



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 92/190 (48%), Gaps = 4/190 (2%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGP--LPNTLIDAYGKCD-LVQYAHHLLEEMPQ 66
           L+ C     A     +HA ++  G+       L   L+D Y KC  L+  A  +   + Q
Sbjct: 219 LKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQ 278

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           ++ + W +++  + Q    ++ + +F    +   ++ D  V +S+V           G+Q
Sbjct: 279 KNAIQWTTVIVGHAQEGQVKEAMELFGRFWS-SGVRADGHVLSSVVGVFADFALVEQGRQ 337

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           VH   V +P   D  V +SL+DMY KCGL + A   F  +  +N VSWTAM++   + G 
Sbjct: 338 VHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGKHGH 397

Query: 187 KKDAMEIFEQ 196
            ++A+ +FE+
Sbjct: 398 GQEAIHMFEE 407


>gi|297600629|ref|NP_001049519.2| Os03g0241800 [Oryza sativa Japonica Group]
 gi|108707104|gb|ABF94899.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674356|dbj|BAF11433.2| Os03g0241800 [Oryza sativa Japonica Group]
          Length = 810

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 200/580 (34%), Positives = 322/580 (55%), Gaps = 40/580 (6%)

Query: 60  LLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD-KLQPDHFVFASLVKACGSL 118
           +L+  P R  V +  +L     A+L +  + +F++M        PDH+ +   +K+C + 
Sbjct: 76  VLDASPDRTTVFFNVLLRGLTAASLHRDALLLFASMRPQGHACFPDHYTYPLALKSCAAT 135

Query: 119 GATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAML 178
               LG+Q+H+         +  V  S + MYA+CG P++A  +F+ ++ ++ VSW AM+
Sbjct: 136 DGLVLGRQIHSSTARLGLDGNVFVAHSAISMYARCGRPDDAYQMFEEMQYRDVVSWNAMI 195

Query: 179 SAYARSGRKKDAMEIFE-----QAP---------------------------------VR 200
           S +A +G    AM++F      Q P                                  +
Sbjct: 196 SGFAHAGLFGRAMDVFRELVALQCPKPDAGTMASILPSMGKARVEDIALLKGVFDEMRFK 255

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
            L  W A+++    +   ++A   F+ M+++G++  D + L++++ +C   + L LGK+I
Sbjct: 256 GLISWNAMLAVYTNNEMHVEAVELFMRMQKDGIE-PDAVTLATVLPSCGEVSALSLGKRI 314

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H ++      S + + NA++DMYA C  +  A+D+F  M  +DVVSWTSII    +HG  
Sbjct: 315 HEVIKRRRMCSSMLLENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHG 374

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
            E + L+++M   G++P+ + FV ++ ACSH GL+  G+  F SM  ++ I P L+HY C
Sbjct: 375 REAIDLFEKMCGQGLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEHYAC 434

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DLL R+G + EA + I  MP +P+E  W ALL AC+ H N ++G   A+ LL L P+ 
Sbjct: 435 MVDLLGRAGCIREAYDFIMVMPIKPNERVWGALLGACRIHSNMDIGLLAADSLLRLAPKQ 494

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
              Y+LLSN+YA A  W  VS VR +M    +KK PG S  E G   H F+ G+TSHP  
Sbjct: 495 TGYYVLLSNIYARAGRWADVSMVRSVMESKGIKKLPGVSNAELGDRVHTFHIGDTSHPQS 554

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
             I++ L+EL   ++  GY P+  + LHD+E+++KE  L  HSE+LA+A+ L+ + PGT 
Sbjct: 555 KMIYKKLSELLRRIREMGYNPEVEATLHDVEEEDKEGHLSVHSEKLAIAFLLINTNPGTP 614

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFK 600
           +R+  NLR C DCH   K+IS I  REI+++D  R H+ K
Sbjct: 615 IRITMNLRTCSDCHHAAKLISTIAGREIILKDVNRIHYMK 654



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 69/146 (47%), Gaps = 9/146 (6%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L N L+D Y  C  ++ A  + + M  RD VSW SI++AY +    ++ I +F  M    
Sbjct: 329 LENALMDMYANCGCLKEARDVFDSMGTRDVVSWTSIISAYGRHGHGREAIDLFEKMCG-Q 387

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQ----VHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
            L+PD   F +++ AC   G   +GK     + + F ++P  +     + +VD+  + G 
Sbjct: 388 GLEPDSIAFVAILAACSHAGLLDMGKHYFYSMTSEFHIAPKLEH---YACMVDLLGRAGC 444

Query: 156 PNNARAVFDSIKLK-NSVSWTAMLSA 180
              A      + +K N   W A+L A
Sbjct: 445 IREAYDFIMVMPIKPNERVWGALLGA 470


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/606 (34%), Positives = 341/606 (56%), Gaps = 40/606 (6%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L  CA  ++    + +H   +K GL     + N L+  YG+C  +     +   M + D 
Sbjct: 488  LSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDE 547

Query: 70   VSWASILTAYNQANLP-QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW +++     +  P  + + +F+ M+    L P+   F +L+ A   L    LGKQVH
Sbjct: 548  VSWNTMMGVMASSQTPISEIVKVFNNMMR-GGLIPNKVTFINLLAALSPLSVLELGKQVH 606

Query: 129  ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK-LKNSVSWTAMLSAYARSGRK 187
            A  +     +D+VV ++L+  YAK G   +   +F ++   ++++SW +M+S Y  +G  
Sbjct: 607  AAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNL 666

Query: 188  KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
            ++AM+           +W  + SG                       I+D    S I+ A
Sbjct: 667  QEAMDC----------VWLMIHSG----------------------QIMDCCTFSIILNA 694

Query: 248  CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
            CA+ A LE G ++H   I    ES + + +A+VDMY+KC  +  A  +F  M +++  SW
Sbjct: 695  CASVAALERGMELHAFGIRSHLESDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSW 754

Query: 308  TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
             S+I G A+HG   + + +++EM+ +   P+ VTFV ++ ACSH GLV +G + F+ M+ 
Sbjct: 755  NSMISGYARHGLGRKAIEIFEEMLRSRESPDHVTFVSVLSACSHAGLVERGLEYFE-MMP 813

Query: 368  DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHR---NTE 424
            D+GI P ++HY+C++DLL R+G +D+ +  I+ MP EP+   W  +L AC+  +   N +
Sbjct: 814  DHGILPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNID 873

Query: 425  MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
            +G   +  LL ++P++P +Y+L SN +A+  MW+  +K R  M     KKE G S++   
Sbjct: 874  LGREASRVLLEIEPQNPVNYVLASNFHAATGMWEDTAKARTAMRQATEKKEAGRSWVTLN 933

Query: 485  KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
             G H F AG+ SHP   EI+E L  L   ++  GYVP T   L+D+E++ KE  L +HSE
Sbjct: 934  DGVHTFIAGDRSHPNTKEIYEKLNFLIQNIRNAGYVPLTEYALYDLEEENKEELLSYHSE 993

Query: 545  RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
            +LA+A+ L +S  G + R++KNLRVCGDCHI  + IS++  R+I++RD+ R+HHFKDGKC
Sbjct: 994  KLAIAFVLTRSSSGPI-RIMKNLRVCGDCHIAFRYISQMISRQIILRDSIRFHHFKDGKC 1052

Query: 605  SCNDFW 610
            SC D+W
Sbjct: 1053 SCGDYW 1058



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 186/404 (46%), Gaps = 44/404 (10%)

Query: 23  KTLHAQIIKLGLHQYG-PLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           + +H  +++ GL      + N L++ Y KC  ++ A  + + M   D +SW +I++A +Q
Sbjct: 399 RVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQ 458

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
               ++ +  +S M     + P +F   S + +C  L     G+QVH   V      D  
Sbjct: 459 NGNCEEAVMHYSLMRQ-SCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTS 517

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V + LV MY +CG  ++   VF+S+   + VSW  M+   A S           Q P+  
Sbjct: 518 VSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASS-----------QTPISE 566

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           +                      F  M R G+ I + +   +++ A +  +VLELGKQ+H
Sbjct: 567 I-------------------VKVFNNMMRGGL-IPNKVTFINLLAALSPLSVLELGKQVH 606

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQA 320
             V+  G      + NA++  YAK  D+ + + +F  M  R+D +SW S+I G   +G  
Sbjct: 607 AAVMKHGVMEDNVVDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNL 666

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH--- 377
           +E +     M+ +G   +  TF  ++ AC+ V  + +G +L       +GI   L+    
Sbjct: 667 QEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHA-----FGIRSHLESDVV 721

Query: 378 -YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
             + L+D+ S+ G +D A  L  +M  + +E +W +++S    H
Sbjct: 722 VESALVDMYSKCGRVDYASKLFNSMT-QRNEFSWNSMISGYARH 764



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/448 (24%), Positives = 207/448 (46%), Gaps = 48/448 (10%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH ++IK GL+    L N L+++Y K   +  A  + +EMP+R+ VSW  +++ Y   
Sbjct: 81  ENLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLH 140

Query: 83  NLPQKTISIFSTML--ALDKLQPDHFVFASLVKACGSLGATRLG--KQVHACFVLSPFCD 138
            + ++   +F  ML       +P  F F +L++AC   G  RLG   QVH     + +  
Sbjct: 141 GIAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYAS 200

Query: 139 DDVVKSSLVDMYAKC--GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           +  V ++L+ MY  C  G P  A+ VFD   +++ ++W A++S YA+ G       +F+ 
Sbjct: 201 NTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKD 260

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
               +           +Q R     F S I               ++   +  + AVL+ 
Sbjct: 261 MQRGD---------SRIQLRPTEHTFGSLI---------------TAASLSSGSSAVLD- 295

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
             Q+   V+  G  S L++ +A+V  +A+      AKDIF  +++K+ V+   +IVG  +
Sbjct: 296 --QVLVWVLKSGCSSDLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVR 353

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK--------LFKSMIED 368
              +EE + ++    +  V  N  T+V L+ A +   +  +G +        + ++ + D
Sbjct: 354 QDFSEEAVKIFVGTRNT-VDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTD 412

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
             I  S      L+++ ++ G ++ A  + + M    D  +W  ++SA   + N E    
Sbjct: 413 LKIAVS----NGLVNMYAKCGAIESASKIFQLME-ATDRISWNTIISALDQNGNCEEAV- 466

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAM 456
           +   L+      PS++ L+S++ + A +
Sbjct: 467 MHYSLMRQSCISPSNFALISSLSSCAGL 494


>gi|297739965|emb|CBI30147.3| unnamed protein product [Vitis vinifera]
          Length = 538

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 197/541 (36%), Positives = 315/541 (58%), Gaps = 39/541 (7%)

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
           W +++  Y++++ P++ I ++ +M+A     P++F F  L+ +C  L +   G +VH+  
Sbjct: 2   WNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHI 61

Query: 132 VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
           +   F  D  V+++L+ +Y+  G  N AR +FD                           
Sbjct: 62  IKHGFESDLFVRNALIHLYSVFGNLNLARTLFD--------------------------- 94

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
               ++ VR+L  +  ++ G  +      A   F EM+       D + L +++ ACA  
Sbjct: 95  ----ESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNS-----DEVTLVAVLSACARL 145

Query: 252 AVLELGKQIHGLVIALG-YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR--KDVVSWT 308
              +LGK+++   I  G +     ++ A++DMYAKC  I +A +IF R+ +  K    + 
Sbjct: 146 GAFDLGKRLYHQYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFN 205

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           S+I G AQHG  E  + ++ E++S G+KP+EVTFVG++ AC H GL+ +G+KLF+SM   
Sbjct: 206 SMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNA 265

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YGI P ++HY C++DLL R G L+EA +L++ MPFE +   W ALLSAC+ H N ++G  
Sbjct: 266 YGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEI 325

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
               LL ++ +  + Y+LLSN+ A A  W+   +VRK+M    ++K PG+SYIE G   H
Sbjct: 326 AGQKLLEMEAQHGARYVLLSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIELGGAIH 385

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F A + SHP   EI  +L ++   +K  GYVP+T+ V+ D++++EKE  + +HSE+LA+
Sbjct: 386 RFVASDKSHPQGKEIELMLKDMAMRLKSAGYVPNTAQVMFDIDEEEKESVVSYHSEKLAL 445

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           A+GL+   P   +R+VKNLR+C DCH   K++S I  REI VRD  R+HHF++G CSC D
Sbjct: 446 AFGLMYCSPTDTIRIVKNLRICADCHKAFKLVSEIYGREITVRDTMRFHHFRNGSCSCMD 505

Query: 609 F 609
           F
Sbjct: 506 F 506



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 127/275 (46%), Gaps = 43/275 (15%)

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
           +W  ++ G  +S N  +A   ++ M  +G+   +      ++ +CA  + LE G ++H  
Sbjct: 1   MWNTMIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSH 60

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           +I  G+ES LF+ NA++ +Y+   ++  A+ +F     +D+VS+ ++I G A+  Q E  
Sbjct: 61  IIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESA 120

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           L L+ EM ++    +EVT V ++ AC+ +G    G++L+   IE+     +      ++D
Sbjct: 121 LCLFGEMQNS----DEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTILTAAVMD 176

Query: 384 LLSRSGHLDEAENLIK------------------------------------AMPFEPDE 407
           + ++ G +D A  + +                                    +   +PDE
Sbjct: 177 MYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDE 236

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLS---LKPE 439
            T+  +L AC H    E G ++   + +   +KP+
Sbjct: 237 VTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQ 271



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/317 (21%), Positives = 137/317 (43%), Gaps = 42/317 (13%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CAR         +H+ IIK G      + N LI  Y     +  A  L +E   RD 
Sbjct: 42  LNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDL 101

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VS+ +++  Y + N P+  + +F  M        D     +++ AC  LGA  LGK+++ 
Sbjct: 102 VSYNTMIKGYAEVNQPESALCLFGEM-----QNSDEVTLVAVLSACARLGAFDLGKRLYH 156

Query: 130 CFVLSP-FCDDDVVKSSLVDMYAKCGLPNNARAVFDSI--KLKNSVSWTAMLSAYARSGR 186
            ++ +  F  + ++ ++++DMYAKCG  ++A  +F  +   +K    + +M++  A+ G 
Sbjct: 157 QYIENGVFNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGL 216

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
            + A+ +F +           L+S  ++                      D +    ++ 
Sbjct: 217 GETAITVFRE-----------LISTGLKP---------------------DEVTFVGVLC 244

Query: 247 ACANFAVLELGKQI-HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDV 304
           AC +  ++E GK++   +  A G +  +     +VD+  +   +  A D+  +M    + 
Sbjct: 245 ACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFEANS 304

Query: 305 VSWTSIIVGTAQHGQAE 321
           V W +++     HG  +
Sbjct: 305 VIWRALLSACRTHGNVK 321


>gi|212274581|ref|NP_001130403.1| uncharacterized protein LOC100191499 [Zea mays]
 gi|194689034|gb|ACF78601.1| unknown [Zea mays]
 gi|413932819|gb|AFW67370.1| hypothetical protein ZEAMMB73_996266 [Zea mays]
          Length = 606

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 212/564 (37%), Positives = 318/564 (56%), Gaps = 41/564 (7%)

Query: 54  VQYAHHLLEEMPQ-RDHVSWASILTAYNQANLPQKT-----ISIFSTMLALDKLQPDHFV 107
           + YA  + + + Q  D V + ++L  Y +++    +     + +F  ML  + + PD + 
Sbjct: 77  LAYARQVFDRVTQPSDAVWYNTLLRGYARSSSSSSSSSAAAVRVFVRMLE-EGVAPDTYT 135

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           F SL+KAC +  A   G+Q HA  V       D V+ +L++MYA+CG    AR  F    
Sbjct: 136 FVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRAD 195

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
               VS+ AM++A  RS R  +A+ +F                                E
Sbjct: 196 GDCVVSYNAMIAAAVRSSRPGEALVLFR-------------------------------E 224

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           M+ +G++   P+ + S++ ACA    L+LG+ +H  V  LG  S + +S A+VDMYAKC 
Sbjct: 225 MQAKGLNPT-PVTVISVLSACALLGALQLGRWLHDYVRKLGLGSLVKVSTALVDMYAKCG 283

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            +  A  +F  M  +D  +W+ +IV  A HG   E ++L++EM   G+KP+++TF+GL+Y
Sbjct: 284 SLEDAIAVFQGMESRDRQAWSVMIVAYANHGYGREAISLFEEMKKQGMKPDDITFLGLLY 343

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           ACSH GLV +G + F  M +D+GI P ++HY C+ DLL+RSG L+ A   I  +P  P  
Sbjct: 344 ACSHSGLVSEGLRYFDDM-KDHGIVPGIKHYGCVTDLLARSGQLERAYKFIDELPINPTP 402

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
             W  LLSAC  H + E+G RV   +L L       Y++ SN+ A+   W+ +++VRKLM
Sbjct: 403 ILWRTLLSACGGHGDVELGKRVFERILELDDSHGGDYVIFSNLCANTGYWEEMNRVRKLM 462

Query: 468 SVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
           S   V K PG S IE     H F+AG+  HP   E  +++ E+  ++K  GY+PDTS V 
Sbjct: 463 SDKGVVKVPGCSSIEIDNTVHEFFAGDGRHPKSQEARKMVDEVIDQLKLVGYIPDTSHVF 522

Query: 528 H-DMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKR 586
           H +M ++EK   L +HSE+LA+A+GLL + PG  LRVVKNLRVC DCH + K +S +  R
Sbjct: 523 HVEMGEEEKAISLKYHSEKLAIAFGLLNTAPGATLRVVKNLRVCPDCHSMAKFVSMVFNR 582

Query: 587 EIVVRDATRYHHFKDGKCSCNDFW 610
            I++RD  R+HHF+ G CSC D+W
Sbjct: 583 RIILRDLNRFHHFERGICSCGDYW 606



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/406 (23%), Positives = 169/406 (41%), Gaps = 79/406 (19%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L+ CA  +     +  HA  +KLG   +  +  TLI+ Y +C   + A        
Sbjct: 136 FVSLLKACAAARAGEHGRQAHAVAVKLGAAGHDYVRPTLINMYAECGDARAARVTFGRAD 195

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
               VS+ +++ A  +++ P + + +F  M A   L P      S++ AC  LGA +LG+
Sbjct: 196 GDCVVSYNAMIAAAVRSSRPGEALVLFREMQA-KGLNPTPVTVISVLSACALLGALQLGR 254

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            +H             V ++LVDMYAKCG   +A AVF  ++ ++  +W+ M+ AYA  G
Sbjct: 255 WLHDYVRKLGLGSLVKVSTALVDMYAKCGSLEDAIAVFQGMESRDRQAWSVMIVAYANHG 314

Query: 186 RKKDAMEIFEQAPVRNL---------FLWTALVSGLVQSRNEIDAFYSFIEMRREGV--- 233
             ++A+ +FE+   + +          L+    SGLV      +    F +M+  G+   
Sbjct: 315 YGREAISLFEEMKKQGMKPDDITFLGLLYACSHSGLVS-----EGLRYFDDMKDHGIVPG 369

Query: 234 ---------------------DIVD-------PLVLSSIVGACANFAVLELGKQIHGLVI 265
                                  +D       P++  +++ AC     +ELGK++     
Sbjct: 370 IKHYGCVTDLLARSGQLERAYKFIDELPINPTPILWRTLLSACGGHGDVELGKRV----- 424

Query: 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR-------KDVV---SWTSI----- 310
              +E  L + ++    Y   S++ A    +  M R       K VV     +SI     
Sbjct: 425 ---FERILELDDSHGGDYVIFSNLCANTGYWEEMNRVRKLMSDKGVVKVPGCSSIEIDNT 481

Query: 311 ----IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
                 G  +H +++E   + DE++      +++  VG I   SHV
Sbjct: 482 VHEFFAGDGRHPKSQEARKMVDEVI------DQLKLVGYIPDTSHV 521


>gi|222619165|gb|EEE55297.1| hypothetical protein OsJ_03249 [Oryza sativa Japonica Group]
          Length = 706

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/563 (39%), Positives = 316/563 (56%), Gaps = 14/563 (2%)

Query: 56  YAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115
           YA  LL   P    ++  S+L A  +   P      F  +     L PD++ F  LV+A 
Sbjct: 150 YARLLLPRRPA-TLLAHNSLLRALARGRRPHLAFGAFRDL----PLAPDNYSFTFLVRAA 204

Query: 116 GSLGATRLGK--------QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
            +L A              VHA  +      D  V+S  V MYA  G    ARA F  I 
Sbjct: 205 TALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIA 264

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
             + V  TAM+ A A  G    A E+F+  P R+   W A+++G V +    +A   F E
Sbjct: 265 SPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDE 324

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           MR  G   V  + L S + ACA    LE GK +H    + G    + +  A++DMY+KC 
Sbjct: 325 MRHAGA-AVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCG 383

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            + AA ++F  M  ++V +WTS + G A +G   + LAL+  M S GV+PN VTFV ++ 
Sbjct: 384 AVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLR 443

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
            CS  GLV +GR  F SM  ++GI P L+HY C++DL  R+G LD+A N I  MP EP E
Sbjct: 444 GCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHE 503

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
             W ALL+A + H+N E+G    + L++++ ++ ++++LLSN+YA +  W+ VS VR +M
Sbjct: 504 GVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMM 563

Query: 468 SVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
               VKK PG S IE G   H F+ G  +HP   EI  +L E++  ++ +GY+ +T  VL
Sbjct: 564 KAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVL 623

Query: 528 HDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
            D+E+++KE  +  HSE+LA+A+GL+       +R+VKNLRVC DCH   KMIS++  RE
Sbjct: 624 FDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNRE 683

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           IV+RD  R+HHFKDG CSC D+W
Sbjct: 684 IVMRDRNRFHHFKDGACSCKDYW 706



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 80/207 (38%), Gaps = 42/207 (20%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA+       K +H+     G+     L   LID Y KC  V  A  + + M +R+ 
Sbjct: 341 LTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNV 400

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            +W S ++      + +  +++F  M +   ++P+   F  +++ C              
Sbjct: 401 YTWTSAVSGLAMNGMGRDCLALFKRMESTG-VEPNGVTFVVVLRGC-------------- 445

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-----WTAMLSAYARS 184
                                +  GL +  RA FDS+K  + +      +  M+  Y R+
Sbjct: 446 ---------------------SMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRA 484

Query: 185 GRKKDAMEIFEQAPVR-NLFLWTALVS 210
           GR  DA+      P+  +  +W AL++
Sbjct: 485 GRLDDAVNFINGMPLEPHEGVWGALLN 511


>gi|297597505|ref|NP_001044065.2| Os01g0715700 [Oryza sativa Japonica Group]
 gi|255673627|dbj|BAF05979.2| Os01g0715700 [Oryza sativa Japonica Group]
          Length = 699

 Score =  395 bits (1015), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/563 (39%), Positives = 316/563 (56%), Gaps = 14/563 (2%)

Query: 56  YAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115
           YA  LL   P    ++  S+L A  +   P      F  +     L PD++ F  LV+A 
Sbjct: 143 YARLLLPRRPA-TLLAHNSLLRALARGRRPHLAFGAFRDL----PLAPDNYSFTFLVRAA 197

Query: 116 GSLGATRLGK--------QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
            +L A              VHA  +      D  V+S  V MYA  G    ARA F  I 
Sbjct: 198 TALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIA 257

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
             + V  TAM+ A A  G    A E+F+  P R+   W A+++G V +    +A   F E
Sbjct: 258 SPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDE 317

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           MR  G   V  + L S + ACA    LE GK +H    + G    + +  A++DMY+KC 
Sbjct: 318 MRHAGA-AVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCG 376

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            + AA ++F  M  ++V +WTS + G A +G   + LAL+  M S GV+PN VTFV ++ 
Sbjct: 377 AVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLR 436

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
            CS  GLV +GR  F SM  ++GI P L+HY C++DL  R+G LD+A N I  MP EP E
Sbjct: 437 GCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHE 496

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
             W ALL+A + H+N E+G    + L++++ ++ ++++LLSN+YA +  W+ VS VR +M
Sbjct: 497 GVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMM 556

Query: 468 SVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
               VKK PG S IE G   H F+ G  +HP   EI  +L E++  ++ +GY+ +T  VL
Sbjct: 557 KAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVL 616

Query: 528 HDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
            D+E+++KE  +  HSE+LA+A+GL+       +R+VKNLRVC DCH   KMIS++  RE
Sbjct: 617 FDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNRE 676

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           IV+RD  R+HHFKDG CSC D+W
Sbjct: 677 IVMRDRNRFHHFKDGACSCKDYW 699



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 80/207 (38%), Gaps = 42/207 (20%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA+       K +H+     G+     L   LID Y KC  V  A  + + M +R+ 
Sbjct: 334 LTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNV 393

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            +W S ++      + +  +++F  M +   ++P+   F  +++ C              
Sbjct: 394 YTWTSAVSGLAMNGMGRDCLALFKRMESTG-VEPNGVTFVVVLRGC-------------- 438

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-----WTAMLSAYARS 184
                                +  GL +  RA FDS+K  + +      +  M+  Y R+
Sbjct: 439 ---------------------SMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRA 477

Query: 185 GRKKDAMEIFEQAPVR-NLFLWTALVS 210
           GR  DA+      P+  +  +W AL++
Sbjct: 478 GRLDDAVNFINGMPLEPHEGVWGALLN 504


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/569 (37%), Positives = 327/569 (57%), Gaps = 64/569 (11%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           L+D Y K   +  A    EE+P++D + W+ ++  Y Q++  ++ + +F  M     L P
Sbjct: 281 LLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVL-P 339

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAV 162
           + F FAS+++AC ++    LG Q+H C V+      DV V ++L+D+YAKC         
Sbjct: 340 NQFTFASVLQACATMEGLNLGNQIH-CHVIKIGLHSDVFVSNALMDVYAKC--------- 389

Query: 163 FDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN-LFLWTALVSGLVQSRNEIDA 221
                                 GR +++M +F ++P RN +  W  ++ G VQ  +   A
Sbjct: 390 ----------------------GRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKA 427

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F+ M    V   + +  SS + ACA+ A LE G QIH L +   ++  + ++NA++D
Sbjct: 428 LRLFLNMLEYRVQATE-VTYSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALID 486

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MYAKC  I  A+ +F  M ++D VSW ++I G + HG                       
Sbjct: 487 MYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHG----------------------- 523

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
                 AC++ GL+ +G+  F SMI+D+GI P ++HYTC++ LL R GHLD+A  LI  +
Sbjct: 524 -----LACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEI 578

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           PF+P    W ALL AC  H + E+G   A H+L ++P+D ++++LLSN+YA+A  W +V+
Sbjct: 579 PFQPSVMVWRALLGACVIHNDIELGRISAQHVLEMEPQDKATHVLLSNMYATAKRWDNVA 638

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
            VRK M    VKKEPG S+IE     H F  G+TSHP    I  +L  L  + K+ GY+P
Sbjct: 639 SVRKNMKRKGVKKEPGLSWIESQGTVHSFTVGDTSHPEVRVINGMLEWLHMKTKKAGYIP 698

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           + + VL D+E +EKER L+ HSERLA+++G++++  G+ +R++KNLR+C DCH  +K IS
Sbjct: 699 NYNVVLLDVEDEEKERLLWVHSERLALSFGIIRTPSGSPIRIMKNLRICVDCHAAIKCIS 758

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++ +REIVVRD  R+HHF++G CSC D+W
Sbjct: 759 KVVQREIVVRDINRFHHFQEGLCSCGDYW 787



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/413 (24%), Positives = 191/413 (46%), Gaps = 42/413 (10%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLP----NTLIDAYGKCDLVQYAHHLL 61
           Y + L+ C +       K LH +I+K G    G L     N L++ Y K D +  A  L 
Sbjct: 41  YANALQDCIQKDEPSRGKGLHCEILKRG----GCLDLFAWNILLNMYVKSDFLCDASKLF 96

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
           +EMP+R+ +S+ +++  Y ++    + I +F   L  +  + + FVF +++K   S+   
Sbjct: 97  DEMPERNTISFVTLIQGYAESVRFLEAIELF-VRLHREGHELNPFVFTTILKLLVSMDCG 155

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
            LG  +HAC                               +F      N+   TA++ AY
Sbjct: 156 ELGWGIHAC-------------------------------IFKLGHESNAFVGTALIDAY 184

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
           +  GR   A E+F+    +++  WT +V+   ++    +A   F +MR  G    +    
Sbjct: 185 SVCGRVDVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFK-PNNFTF 243

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           +S+  AC      ++GK +HG  +   YE  L++  A++D+Y K  DI  A+  F  + +
Sbjct: 244 ASVFKACLGLEAFDVGKSVHGCALKSRYELDLYVGVALLDLYTKSGDIDDARXAFEEIPK 303

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           KDV+ W+ +I   AQ  Q++E + ++ +M  A V PN+ TF  ++ AC+ +  +  G ++
Sbjct: 304 KDVIPWSFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQI 363

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
              +I+  G+   +     L+D+ ++ G ++ +  L    P   D   W  ++
Sbjct: 364 HCHVIK-IGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVI 415



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 157/337 (46%), Gaps = 44/337 (13%)

Query: 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
           +W  +L+ Y +S    DA ++F++ P RN   +  L+ G  +S   ++A   F+ + REG
Sbjct: 75  AWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREG 134

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
            ++ +P V ++I+    +    ELG  IH  +  LG+ES  F+  A++D Y+ C  +  A
Sbjct: 135 HEL-NPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRVDVA 193

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
           +++F  +  KD+VSWT ++   A++   +E L L+ +M   G KPN  TF  +  AC  +
Sbjct: 194 REVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGL 253

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP---------- 402
                G+ +    ++       L     LLDL ++SG +D+A    + +P          
Sbjct: 254 EAFDVGKSVHGCALKSR-YELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFM 312

Query: 403 -----------------FE-------PDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
                            F+       P++ T+A++L AC       +G ++  H++ +  
Sbjct: 313 IARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIG- 371

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKE 475
                  L S+V+ S A+    +K  ++ + M +  E
Sbjct: 372 -------LHSDVFVSNALMDVYAKCGRMENSMXLFAE 401



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/177 (35%), Positives = 99/177 (55%), Gaps = 2/177 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA  +       +H  +IK+GLH    + N L+D Y KC  ++ +  L  E P R+ 
Sbjct: 348 LQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMXLFAESPHRND 407

Query: 70  VS-WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
           V+ W +++  + Q    +K + +F  ML   ++Q     ++S ++AC SL A   G Q+H
Sbjct: 408 VTPWNTVIVGHVQLGDGEKALRLFLNMLEY-RVQATEVTYSSALRACASLAALEPGLQIH 466

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           +  V + F  D VV ++L+DMYAKCG   +AR VFD +  ++ VSW AM+S Y+  G
Sbjct: 467 SLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHG 523



 Score = 43.5 bits (101), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 40/203 (19%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   LR CA          +H+  +K    +   + N LID Y KC  ++ A  + + M 
Sbjct: 446 YSSALRACASLAALEPGLQIHSLTVKTTFDKDIVVTNALIDMYAKCGSIKDARLVFDLMN 505

Query: 66  QRDHVSWASILTAYN-------QANLPQKTISIFSTMLA--------------------- 97
           ++D VSW ++++ Y+        A L  +  + F++M+                      
Sbjct: 506 KQDEVSWNAMISGYSMHGLACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRG 565

Query: 98  --LDK---------LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSL 146
             LDK          QP   V+ +L+ AC       LG+ + A  VL     D      L
Sbjct: 566 GHLDKAVKLIDEIPFQPSVMVWRALLGACVIHNDIELGR-ISAQHVLEMEPQDKATHVLL 624

Query: 147 VDMYAKCGLPNNARAVFDSIKLK 169
            +MYA     +N  +V  ++K K
Sbjct: 625 SNMYATAKRWDNVASVRKNMKRK 647


>gi|356561762|ref|XP_003549147.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g66520-like [Glycine max]
          Length = 622

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/593 (35%), Positives = 338/593 (56%), Gaps = 6/593 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN- 80
           +K  HAQ+I   L  +    N L+     C  + YAH L +++PQ D   + +++ A++ 
Sbjct: 32  IKQTHAQLITTALISHPVSANKLLK-LAACASLSYAHKLFDQIPQPDLFIYNTMIKAHSL 90

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
             +    ++ +F ++     L P+ + F     ACG+    + G+QV    V     ++ 
Sbjct: 91  SPHSCHNSLIVFRSLTQDLGLFPNRYSFVFAFSACGNGLGVQEGEQVRIHAVKVGLENNV 150

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V ++L+ MY K GL   ++ VF     ++  SW  +++AY  SG    A E+F+    R
Sbjct: 151 FVVNALIGMYGKWGLVGESQKVFQWAVDRDLYSWNTLIAAYVGSGNMSLAKELFDGMRER 210

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           ++  W+ +++G VQ    ++A   F +M + G    +   L S + AC+N   L+ GK I
Sbjct: 211 DVVSWSTIIAGYVQVGCFMEALDFFHKMLQIGPK-PNEYTLVSALAACSNLVALDQGKWI 269

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQ 319
           H  +     +    +  +I+DMYAKC +I +A  +F   + ++ V  W ++I G A HG 
Sbjct: 270 HAYIGKGEIKMNERLLASIIDMYAKCGEIESASRVFFEHKVKQKVWLWNAMIGGFAMHGM 329

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
             E + ++++M    + PN+VTF+ L+ ACSH  +V +G+  F+ M+ DY ITP ++HY 
Sbjct: 330 PNEAINVFEQMKVEKISPNKVTFIALLNACSHGYMVEEGKLYFRLMVSDYAITPEIEHYG 389

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++DLLSRSG L EAE++I +MP  PD   W ALL+AC+ +++ E G R+   +  + P 
Sbjct: 390 CMVDLLSRSGLLKEAEDMISSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKGMDPN 449

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSV-MEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
               ++LLSN+Y+++  W     +R+   +  + KK PG S IE     H F  G+ SHP
Sbjct: 450 HIGCHVLLSNIYSTSGRWNEARILREKNEISRDRKKIPGCSSIELKGTFHQFLVGDQSHP 509

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE-KERQLFWHSERLAVAYGLLKSVP 557
              EI+  L E+  ++K  GYVP+   +LHD++ +E KE  L  HSE+LA+A+GL+ +  
Sbjct: 510 QSREIYSFLDEMTTKLKSAGYVPELGELLHDIDDEEDKETALSVHSEKLAIAFGLMNTAN 569

Query: 558 GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           GT +R+VKNLRVCGDCH   K IS++  R I+VRD TRYHHF+DG CSC D+W
Sbjct: 570 GTPIRIVKNLRVCGDCHQATKFISKVYNRVIIVRDRTRYHHFEDGICSCKDYW 622


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 210/589 (35%), Positives = 332/589 (56%), Gaps = 35/589 (5%)

Query: 23  KTLHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           K +H   IK  L+   P +   L+D Y KC  ++ A    E +P  D +  + +++ Y Q
Sbjct: 283 KGIHGCAIKT-LNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQ 341

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
           +N  ++   +F  ++    L P+ +  +S+++AC ++     GKQ+H   +      D  
Sbjct: 342 SNQNEQAFELFLRLMRSSVL-PNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLF 400

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V ++L+D YAKC   +++  +F S++  N VSW  ++  +++SG  ++A+ +        
Sbjct: 401 VGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSV-------- 452

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                                  F EM+   +     +  SS++ ACA+ A +    QIH
Sbjct: 453 -----------------------FCEMQAAQMPCTQ-VTYSSVLRACASTASIRHAGQIH 488

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             +    + +   I N+++D YAKC  I  A  +F  +  +D++SW +II G A HGQA 
Sbjct: 489 CSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAA 548

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           + L L+D M  + V+ N++TFV L+  CS  GLV  G  LF SM  D+GI PS++HYTC+
Sbjct: 549 DALELFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCI 608

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           + LL R+G L++A   I  +P  P    W ALLS+C  H+N  +G   A  +L ++P+D 
Sbjct: 609 VRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDE 668

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
           ++Y+LLSN+YA+A     V+ +RK M  + V+K PG S++E     H F  G   HP   
Sbjct: 669 TTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFSVGSVDHPDMR 728

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            I  +L  L+ +  R GY+PD + VLHD+++++K R L+ HSERLA+AYGL+ + PG  +
Sbjct: 729 VINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYGLVMTPPGHPI 788

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R++KNLR C DCH    +IS+I KREI+VRD  R+HHF+DGKCSC D+W
Sbjct: 789 RILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 837



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/396 (29%), Positives = 201/396 (50%), Gaps = 35/396 (8%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H+   KLG      + + LIDAY  C LV  A H+   + ++D V W ++++ Y++ + 
Sbjct: 184 VHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDC 243

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P+    +FS M  +   +P+ F   S++KA   L +  LGK +H C + +    +  V  
Sbjct: 244 PENAFRVFSKM-RVSGCKPNPFALTSVLKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGG 302

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +L+DMYAKCG   +AR  F+ I   + +  + M+S YA+S + + A E+           
Sbjct: 303 ALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFEL----------- 351

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                               F+ + R  V + +   LSS++ AC N   L+ GKQIH   
Sbjct: 352 --------------------FLRLMRSSV-LPNEYSLSSVLQACTNMVQLDFGKQIHNHA 390

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           I +G+ES LF+ NA++D YAKC+D+ ++  IF  +R  + VSW +I+VG +Q G  EE L
Sbjct: 391 IKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEAL 450

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
           +++ EM +A +   +VT+  ++ AC+    +    ++  S IE             L+D 
Sbjct: 451 SVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCS-IEKSTFNNDTVIGNSLIDT 509

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            ++ G++ +A  + + +  E D  +W A++S    H
Sbjct: 510 YAKCGYIRDALKVFQHL-MERDIISWNAIISGYALH 544



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 190/410 (46%), Gaps = 41/410 (10%)

Query: 9   RLRVCARHQIALTVKTLHAQIIKLGLHQYGPL----PNTLIDAYGKCDLVQYAHHLLEEM 64
           +L+ C     A   + +H  +++ G    G L     N L++ YGK   +  A  L + M
Sbjct: 65  QLQGCIARGDARGGRAVHGHVVRRG--GVGRLDLFCANVLLNMYGKLGPLASARRLFDRM 122

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           P+R+ VS+ +++ A+ Q    +   ++F   L  +  + + FV  +++K   ++ A  L 
Sbjct: 123 PERNMVSFVTLVQAHAQRGDFEAAAALFRR-LRWEGHEVNQFVLTTMLKLAIAMDAAGLA 181

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
             VH+C        +  V S L+D Y+ C L ++A  VF+ I  K++V WTAM+S Y+  
Sbjct: 182 GGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYS-- 239

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
             + D  E                           +AF  F +MR  G    +P  L+S+
Sbjct: 240 --ENDCPE---------------------------NAFRVFSKMRVSGCK-PNPFALTSV 269

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + A      + LGK IHG  I    ++   +  A++DMYAKC DI  A+  F  +   DV
Sbjct: 270 LKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDV 329

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           +  + +I   AQ  Q E+   L+  ++ + V PNE +   ++ AC+++  +  G+++   
Sbjct: 330 ILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNH 389

Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
            I+  G    L     L+D  ++   +D +  +  ++  + +E +W  ++
Sbjct: 390 AIK-IGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLR-DANEVSWNTIV 437



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 86/218 (39%), Gaps = 42/218 (19%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   LR CA          +H  I K   +    + N+LID Y KC  ++ A  + + + 
Sbjct: 468 YSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLM 527

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +RD +SW +I++ Y         + +F  M     ++ +   F +L+  C S        
Sbjct: 528 ERDIISWNAIISGYALHGQAADALELFDRM-NKSNVESNDITFVALLSVCSS-------- 578

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-----WTAMLSA 180
                                       GL N+  ++FDS+++ + +      +T ++  
Sbjct: 579 ---------------------------TGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRL 611

Query: 181 YARSGRKKDAMEIFEQAP-VRNLFLWTALVSGLVQSRN 217
             R+GR  DA++     P   +  +W AL+S  +  +N
Sbjct: 612 LGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKN 649


>gi|225428400|ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
 gi|297744424|emb|CBI37686.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/594 (36%), Positives = 334/594 (56%), Gaps = 42/594 (7%)

Query: 25  LHAQIIKL---GLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           LHAQI+K            P     A      + YAH +L  +  ++     +++ AY+Q
Sbjct: 12  LHAQILKSPDPKKQTRNLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHNTMIRAYSQ 71

Query: 82  ANLPQKTISIFSTMLAL-DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
              P + + +F +ML      +PD F +  L+K+C  L   R+GKQ+H     S    D 
Sbjct: 72  TPDPTQALHLFLSMLCQPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYKSGLESDR 131

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V + L+ MY+ CG                            +SGR   A ++F +   R
Sbjct: 132 YVSNGLIHMYSSCG----------------------------KSGR---AYKVFGKMRDR 160

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           ++  WT+++ G V     ++A   F EM  +GV+  +  V+S ++ ACA+   + +G+++
Sbjct: 161 DVVSWTSMIDGFVDDDRALEAIRLFEEMVEDGVEPNEATVVS-VLRACADAGAVGMGRRV 219

Query: 261 HGLV--IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
            G++    +G E+   +  A++DMYAKC  I +A+ +F  +  KDV +WT++I G A HG
Sbjct: 220 QGVIEERKIGLEAN--VRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHG 277

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
             EE + L+D+M S G++P+E T   ++ AC + G   +G   F SM   YGI P++QHY
Sbjct: 278 LCEEAVTLFDQMESFGLRPDERTMTAVLSACRNAGWFSEGFAYFNSMWCKYGIKPTIQHY 337

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH--LLSL 436
            C++DLL+R+GHLDEAE  I+ MP EPD   W  L+ A K H + +   ++     LL +
Sbjct: 338 GCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWASKVHGDIDRSEQLMKDRGLLKM 397

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETS 496
             +D  SY+LL NVYASA  W   +K+R+LM+   + K PG S IE     H F AG++ 
Sbjct: 398 DSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSKPPGCSRIEVDGLVHEFAAGDSG 457

Query: 497 HPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSV 556
           H   ++I+  L E++  +K  GY P  S VL +++ KEK  QL  HSE+LAVA+GL+K+ 
Sbjct: 458 HIEAEKIYAKLDEVEERLKAEGYHPKLSEVLLEIDNKEKAFQLRHHSEKLAVAFGLIKTS 517

Query: 557 PGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           PGT +R+VKNLR C DCH V+K+IS+I +++I+VRD  R+HHF +G CSC D+W
Sbjct: 518 PGTEIRIVKNLRSCEDCHSVLKLISKIYQQDIIVRDRIRFHHFINGDCSCKDYW 571



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/323 (26%), Positives = 142/323 (43%), Gaps = 35/323 (10%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   L+ CAR +     K LH  I K GL     + N LI  Y  C     A+ +  +M 
Sbjct: 99  YPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKSGRAYKVFGKMR 158

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            RD VSW S++  +   +   + I +F  M+  D ++P+     S+++AC   GA  +G+
Sbjct: 159 DRDVVSWTSMIDGFVDDDRALEAIRLFEEMVE-DGVEPNEATVVSVLRACADAGAVGMGR 217

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           +V           +  V+++L+DMYAKCG   +AR VFD I  K+  +WTAM+S  A  G
Sbjct: 218 RVQGVIEERKIGLEANVRTALIDMYAKCGSIGSARKVFDGIVNKDVFAWTAMISGLANHG 277

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             ++A+ +F+Q                               M   G+   D   +++++
Sbjct: 278 LCEEAVTLFDQ-------------------------------MESFGLR-PDERTMTAVL 305

Query: 246 GACANFAVLELG-KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKD 303
            AC N      G    + +    G +  +     +VD+ A+   +  A++   +M    D
Sbjct: 306 SACRNAGWFSEGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPD 365

Query: 304 VVSWTSIIVGTAQHGQAEETLAL 326
           VV W ++I  +  HG  + +  L
Sbjct: 366 VVLWRTLIWASKVHGDIDRSEQL 388


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 203/607 (33%), Positives = 338/607 (55%), Gaps = 38/607 (6%)

Query: 10  LRVCARHQIALTVK-TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRD 68
           L +C  H+ +L+    +H  I+  G  Q   L   LI  Y     V YA  + ++  +R 
Sbjct: 83  LILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRT 142

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT----RLG 124
              W ++  A   A   ++ + ++  M  +  ++ D F +  ++KAC +   T      G
Sbjct: 143 IYVWNALFRALTLAGHGEEVLGLYWKMNRIG-VESDRFTYTYVLKACVASECTADHLTKG 201

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           K++HA      +     + ++LVDMYA+ G  + A  V                      
Sbjct: 202 KEIHAHLTRRGYNSHVYIMTTLVDMYARFGCVDYASYV---------------------- 239

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-DPLVLSS 243
                    F   PVRN+  W+A+++   ++    +A  +F EM  E  D   + + + S
Sbjct: 240 ---------FNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSSPNSVTMVS 290

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++ ACA+ A LE G+ IHG ++  G +S L + +A+V MY +C  +   + +F RM  +D
Sbjct: 291 VLQACASLAALEQGRLIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQRVFDRMHDRD 350

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           VVSW S+I     HG   + + +++EM++ G  P  VTFV ++ ACSH GLV +G++LF+
Sbjct: 351 VVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFVSVLGACSHEGLVEEGKRLFE 410

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
           SM  D+GI P ++HY C++DLL R+  LDEA  +++ M  EP    W +LL +C+ H N 
Sbjct: 411 SMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRTEPGPKVWGSLLGSCRIHGNV 470

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           E+  R +  L +L+P++  +Y+LL+++YA A MW  V +V+KL+    ++K PG  ++E 
Sbjct: 471 ELAERASRRLFALEPKNAGNYVLLADIYAEAQMWDEVKRVKKLLEHRGLQKLPGRCWMEV 530

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHS 543
            +  + F + +  +PL ++I   L +L  +MK +GY+P T  VL+++E +EKER +  HS
Sbjct: 531 RRKMYSFVSMDEFNPLMEQIHAFLVKLAEDMKEKGYIPQTKGVLYELETEEKERIVLGHS 590

Query: 544 ERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
           E+LA+A+GL+ +  G  +R+ KNLR+C DCH+  K IS+  ++EI+VRD  R+H FK+G 
Sbjct: 591 EKLALAFGLINTSKGEPIRITKNLRLCEDCHLFTKFISKFMEKEILVRDVNRFHRFKNGV 650

Query: 604 CSCNDFW 610
           CSC D+W
Sbjct: 651 CSCGDYW 657



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 148/339 (43%), Gaps = 40/339 (11%)

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162
           P    +  L+  CG   +   G +VH   + +    D  + + L+ MY+  G  + AR V
Sbjct: 75  PSQQTYELLILCCGHRSSLSDGLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKV 134

Query: 163 FDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
           FD  + +    W A+  A   +G  ++ + ++          W                 
Sbjct: 135 FDKTRKRTIYVWNALFRALTLAGHGEEVLGLY----------W----------------- 167

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAV----LELGKQIHGLVIALGYESCLFISNA 278
               +M R GV+  D    + ++ AC         L  GK+IH  +   GY S ++I   
Sbjct: 168 ----KMNRIGVE-SDRFTYTYVLKACVASECTADHLTKGKEIHAHLTRRGYNSHVYIMTT 222

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV--SAGVK 336
           +VDMYA+   +  A  +F  M  ++VVSW+++I   A++G+A E L  + EM+  +    
Sbjct: 223 LVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTFREMMTETKDSS 282

Query: 337 PNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAEN 396
           PN VT V ++ AC+ +  + +GR L    I   G+   L   + L+ +  R G LD  + 
Sbjct: 283 PNSVTMVSVLQACASLAALEQGR-LIHGYILRRGLDSILPVISALVTMYGRCGKLDVGQR 341

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
           +   M  + D  +W +L+S+   H       ++   +L+
Sbjct: 342 VFDRM-HDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLA 379


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/608 (35%), Positives = 326/608 (53%), Gaps = 45/608 (7%)

Query: 15  RHQIALTVKT------------LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
           +H +A TVK+            + A   K G      + N+LI  Y  C  V  AH L  
Sbjct: 171 QHTVANTVKSCSRMCDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFH 230

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
            +  +  ++W +++  Y +    ++ + +F  ML + +   D     S+  ACG LG   
Sbjct: 231 TVQVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLEV-RAPFDEVTLLSVATACGRLGDAN 289

Query: 123 LGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYA 182
           LG+ +              + ++LVDMYAKC                             
Sbjct: 290 LGQWIAEYAEEKGMLRSRNLATALVDMYAKC----------------------------- 320

Query: 183 RSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLS 242
             G    A  +F++   R++  W+A++SG  QS    +A   F EM+   V+  D + + 
Sbjct: 321 --GELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTEVNPND-VTMV 377

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           S++ ACA    LE GK +H  +        + +  A+VD YAKC  I  A   F  M  +
Sbjct: 378 SVLSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVR 437

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           +  +WT++I G A +G++ E L L+  M+ A ++P +VTF+G++ ACSH  LV +GR+ F
Sbjct: 438 NTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVLLACSHGCLVEEGRRHF 497

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
            SM +DYGI P ++HY C++DLL R+G +DEA   I+ MP EP+   W ALLSAC  H+N
Sbjct: 498 TSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSACTVHKN 557

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
            E+G      ++ L P    +YILLSN YAS   W++ + VRK M    V+K PG S IE
Sbjct: 558 VEIGEEALKQIVPLDPCHSGNYILLSNTYASVGQWKNAAMVRKEMKEKGVEKIPGCSLIE 617

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWH 542
                  F+A ++ HP   EI+E + E+   +K  GY+P+T+    D+++ EK+  +  H
Sbjct: 618 LEGTIFEFFAEDSEHPQLTEIYEKVHEMIENIKMVGYIPNTADARLDVDEYEKQVSVSHH 677

Query: 543 SERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           SE+LA+A+GL+KS PG  +R+ KNLRVC DCH   K+IS++  REI+VRD  R+HHFKDG
Sbjct: 678 SEKLAIAFGLMKSRPGATIRLSKNLRVCIDCHSATKLISKVYNREIIVRDRNRFHHFKDG 737

Query: 603 KCSCNDFW 610
            CSCND+W
Sbjct: 738 LCSCNDYW 745



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 125/274 (45%), Gaps = 8/274 (2%)

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P R+   +  L+   +++ +  DA + F+EM  +     D   +++ V +C+    L +G
Sbjct: 131 PPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANTVKSCSRMCDLSVG 190

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           + +       G+    F+ N+++ MYA C D++AA  +F  ++ K V++W ++I G  ++
Sbjct: 191 RGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVKN 250

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G  +E + ++  M+      +EVT + +  AC  +G    G +      E+ G+  S   
Sbjct: 251 GDWKEVVEMFKGMLEVRAPFDEVTLLSVATACGRLGDANLG-QWIAEYAEEKGMLRSRNL 309

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL--LS 435
            T L+D+ ++ G LD+A  L   M    D   W+A++S             + N +    
Sbjct: 310 ATALVDMYAKCGELDKARRLFDRM-HSRDVVAWSAMISGYTQSDRCREALAIFNEMQGTE 368

Query: 436 LKPEDPSSYILLSNVYASAAM----WQHVSKVRK 465
           + P D +   +LS      A+    W H    RK
Sbjct: 369 VNPNDVTMVSVLSACAVLGALETGKWVHSYIRRK 402



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 5/174 (2%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA      T K +H+ I +  L     L   L+D Y KC  ++ A    E MP R+ 
Sbjct: 380 LSACAVLGALETGKWVHSYIRRKDLPLTVILGTALVDFYAKCGCIKDAVKAFESMPVRNT 439

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            +W +++         ++ + +FS+ML  + ++P    F  ++ AC        G++ H 
Sbjct: 440 WTWTALIKGMASNGRSREALELFSSMLEAN-IEPTDVTFIGVLLACSHGCLVEEGRR-HF 497

Query: 130 CFVLSPF--CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
             +   +  C        +VD+  + GL + A     ++ ++ N+V W A+LSA
Sbjct: 498 TSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPNAVVWRALLSA 551


>gi|125575213|gb|EAZ16497.1| hypothetical protein OsJ_31969 [Oryza sativa Japonica Group]
          Length = 617

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/588 (35%), Positives = 327/588 (55%), Gaps = 35/588 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LH   ++LG      + + L D Y KC L+  A  + ++MPQ+D V+W +++  Y +   
Sbjct: 63  LHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGS 122

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            +  +  F  M     +  D  VF S++ A G L    L K +H C   + F  +  V++
Sbjct: 123 LEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRN 182

Query: 145 SLVDMYAKC-GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           +L+DMYAK   + + +R +       N VS T+M+  Y  +    D +E           
Sbjct: 183 ALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIET----DCVE----------- 227

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
                           +A   ++E+RR+GV+  +    SS++  CA  A+LE G Q+H  
Sbjct: 228 ----------------EALVIYVELRRQGVE-PNEFTFSSMIKGCAMQALLEQGAQLHAQ 270

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           VI        F+ + +VDMY KC  I  +  +F  +  +  ++W ++I   AQHG   E 
Sbjct: 271 VIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREA 330

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           +  +D M+ +G++PN + FV L+ ACSH GLV +G K F SM E +GI P  +HY+C++D
Sbjct: 331 IQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIID 390

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
              R+G LDEA   I  MP +P+   W +LL AC+   + E+G   A +L+ L+P +   
Sbjct: 391 TYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGI 450

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
           ++ LS +YAS   W+ V  VRKLM    +KK PG+S+++  K +H+F + + SHP + +I
Sbjct: 451 HVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDI 510

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
           +E L EL   +K  GY+PDTS +  ++E   KER L +HSER+AVA+ L+ S+P T   +
Sbjct: 511 YEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALI-SMPATKPII 569

Query: 564 VK-NLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           VK NLR+C DCH   K I ++ +R+I+VRD +R+HHF +G+CSC D+W
Sbjct: 570 VKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 617



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 109/362 (30%), Positives = 171/362 (47%), Gaps = 43/362 (11%)

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           MP+R+ VSW ++++  +Q NL           +    + P  F  +S  +A  +LGA   
Sbjct: 1   MPRRNAVSWTTLVSGLSQ-NLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLP 59

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G Q+H   V   F  +  V S+L DMY+KCGL + A  VFD +  K++V+WTAM+  YA+
Sbjct: 60  GAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAK 119

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           +G  + A+                                SF +M+REG+   D  V  S
Sbjct: 120 NGSLEAAV-------------------------------LSFRDMKREGLVGADQHVFCS 148

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++ A        L K IH  V   G+E  + + NA++DMYAK  D+ +A     R+ + D
Sbjct: 149 VLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESAS----RVLKID 204

Query: 304 -----VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
                VVS TS+I G  +    EE L +Y E+   GV+PNE TF  +I  C+   L+ +G
Sbjct: 205 PGGWNVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQG 264

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
            +L   +I+   I  S    T L+D+  + G +  +  L   + +  D   W A+++   
Sbjct: 265 AQLHAQVIKTDLIRDSFVGST-LVDMYGKCGLISLSMQLFNEIEYRTD-IAWNAVINVFA 322

Query: 419 HH 420
            H
Sbjct: 323 QH 324



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 95/175 (54%), Gaps = 2/175 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR-DHVSWASILTAYNQ 81
           K++H  + K G      + N LID Y K   V+ A  +L+  P   + VS  S++  Y +
Sbjct: 163 KSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIE 222

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
            +  ++ + I+   L    ++P+ F F+S++K C        G Q+HA  + +    D  
Sbjct: 223 TDCVEEALVIY-VELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSF 281

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           V S+LVDMY KCGL + +  +F+ I+ +  ++W A+++ +A+ G  ++A++ F++
Sbjct: 282 VGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDR 336



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 15/187 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ CA   +      LHAQ+IK  L +   + +TL+D YGKC L+  +  L  E+  R  
Sbjct: 252 IKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTD 311

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----- 124
           ++W +++  + Q    ++ I  F  M+    ++P+H  F SL+ AC   G    G     
Sbjct: 312 IAWNAVINVFAQHGHGREAIQAFDRMI-YSGIRPNHIAFVSLLTACSHAGLVDEGLKYFY 370

Query: 125 --KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAY 181
             K+ H    + P    +   S ++D Y + G  + A      + +K N+  W ++L A 
Sbjct: 371 SMKEAHG---IEP---KEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGAC 424

Query: 182 ARSGRKK 188
              G K+
Sbjct: 425 RMRGSKE 431


>gi|357507741|ref|XP_003624159.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87162577|gb|ABD28372.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499174|gb|AES80377.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 755

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 217/633 (34%), Positives = 343/633 (54%), Gaps = 50/633 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+R       K +HA I++ G+     L N+++D Y KC   +YA    E M ++D 
Sbjct: 141 LKCCSRENNIQFGKGIHAWILRNGVGGDVVLENSILDLYLKCKEFEYAESFFELMIEKDV 200

Query: 70  VSWASILTAYNQA-----------NLPQKTISIFSTM-----------LALDKL------ 101
           VSW  ++ AY +            N P K +  ++T+           LAL++L      
Sbjct: 201 VSWNIMIGAYLREGDVEKSLEMFRNFPNKDVVSWNTIIDGLIQCGYERLALEQLYCMVAH 260

Query: 102 ----QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
                P  F  A ++ +  SL    +G+Q+H   +      D  ++SSLV+MY KCG  +
Sbjct: 261 GTEFSPVTFSIALILVS--SLSLVEVGRQLHGRVLTFGLNSDGYIRSSLVEMYGKCGRMD 318

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
            A  +   + L            + R G       +  + P   +  W+++VSG V +  
Sbjct: 319 KASTILKDVPLN-----------FLRKGN----FGVTCKEPKARMVSWSSMVSGYVWNGK 363

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             D   +F  M  E + +VD   +++I+ ACAN  +LE GKQIH  +  +G     ++ +
Sbjct: 364 YEDGMKTFRSMVCELI-VVDIRTVATIISACANAGILEFGKQIHAYIQKIGLRIDAYVGS 422

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           +++DMY+K   +  A  IF +++  +VV WTS+I G A HGQ +E ++L++ M++ G+ P
Sbjct: 423 SLIDMYSKSGSLDDALMIFEQIKEPNVVLWTSMISGCALHGQGKEAISLFEGMLNLGIIP 482

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           NEVTFVG++ ACSHVGL+ +G + F+ M + Y I P ++HYT +++L  R+GHL EA+N 
Sbjct: 483 NEVTFVGVLNACSHVGLIEEGCRYFRMMKDTYHINPEVEHYTSMVNLYGRAGHLIEAKNF 542

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           I           W + LS+C+ H+N  MG  V+  LL   P DP +YILLSN+ +S   W
Sbjct: 543 IFENSISHFTSVWRSFLSSCRLHKNFNMGKSVSEMLLQSAPSDPDAYILLSNMCSSNHQW 602

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
              + VR LM    VKK+PG S+++     H F  G+ SHP   EI+  L  L   +K  
Sbjct: 603 DEAAIVRSLMYQRGVKKQPGQSWVQLKDQIHSFTVGDRSHPQDKEIYSYLDSLIGRLKEI 662

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GY  D   V+ D+E+++ E  +  HSE+LA+ + ++ + P T +R++KNLR+C DCH   
Sbjct: 663 GYSLDAKLVMQDVEEEQGEVLISHHSEKLALVFSIINTSPRTPIRIMKNLRICNDCHNFF 722

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K  S++ +REI+VRD  R+HHFK   CSC ++W
Sbjct: 723 KYASQLLEREIIVRDTHRFHHFKQSSCSCGEYW 755



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 217/433 (50%), Gaps = 21/433 (4%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           +++ LH    K G  Q     N L+  Y K   + +AH L +E+  ++  +W  +++ + 
Sbjct: 50  SLRALHGHYFKKGSLQILNSANYLLTLYVKSSNLDHAHKLFDEITHKNTQTWTILISGFA 109

Query: 81  QANLPQKTI-SIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
           +A    + + S+F  M A D   P+ +  +S++K C      + GK +HA  + +    D
Sbjct: 110 RAAGSSELVFSLFREMQA-DGACPNQYTLSSVLKCCSRENNIQFGKGIHAWILRNGVGGD 168

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
            V+++S++D+Y KC     A + F+ +  K+ VSW  M+ AY R G  + ++E+F   P 
Sbjct: 169 VVLENSILDLYLKCKEFEYAESFFELMIEKDVVSWNIMIGAYLREGDVEKSLEMFRNFPN 228

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
           +++  W  ++ GL+Q   E  A      M   G +   P+  S  +   ++ +++E+G+Q
Sbjct: 229 KDVVSWNTIIDGLIQCGYERLALEQLYCMVAHGTEF-SPVTFSIALILVSSLSLVEVGRQ 287

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI-------------FG---RMRRKD 303
           +HG V+  G  S  +I +++V+MY KC  +  A  I             FG   +  +  
Sbjct: 288 LHGRVLTFGLNSDGYIRSSLVEMYGKCGRMDKASTILKDVPLNFLRKGNFGVTCKEPKAR 347

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           +VSW+S++ G   +G+ E+ +  +  MV   +  +  T   +I AC++ G++  G+++  
Sbjct: 348 MVSWSSMVSGYVWNGKYEDGMKTFRSMVCELIVVDIRTVATIISACANAGILEFGKQI-H 406

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
           + I+  G+       + L+D+ S+SG LD+A  + + +  EP+   W +++S C  H   
Sbjct: 407 AYIQKIGLRIDAYVGSSLIDMYSKSGSLDDALMIFEQIK-EPNVVLWTSMISGCALHGQG 465

Query: 424 EMGTRVANHLLSL 436
           +    +   +L+L
Sbjct: 466 KEAISLFEGMLNL 478


>gi|77553706|gb|ABA96502.1| SEC14 cytosolic factor, putative [Oryza sativa Japonica Group]
 gi|125535837|gb|EAY82325.1| hypothetical protein OsI_37535 [Oryza sativa Indica Group]
 gi|125578563|gb|EAZ19709.1| hypothetical protein OsJ_35285 [Oryza sativa Japonica Group]
          Length = 630

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/601 (34%), Positives = 325/601 (54%), Gaps = 33/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L++CA+ +  L  K+ H   I  GL       N LI+ Y KC     A  + + M  R  
Sbjct: 63  LQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAMSVRSI 122

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW +++  Y       + + +FS M   +  Q   F  +S + AC +  A    KQ+H 
Sbjct: 123 ISWNTMIAGYTHNREDVEALKLFSRM-HREGTQMTEFTLSSTLCACAAKYAIIECKQLHT 181

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +                           +   DS    +S   TA L  YA+    KD
Sbjct: 182 IAI---------------------------KLALDS----SSFVGTAFLDVYAKCNMIKD 210

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +FE  P +    W++L +G VQ+    +    F   +REG+ + +   +SSI+  CA
Sbjct: 211 ACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTE-FTVSSILSTCA 269

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           + A++  G Q+H +++  G+   LF++ ++VD+YAKC  I  + ++F  M  K+VV W +
Sbjct: 270 SLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNA 329

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I   ++H  + E + L+++M   G+ PNEVT++ ++ ACSH GLV +GR  F  ++ D 
Sbjct: 330 MIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDR 389

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
              P++ HY+C++D+L RSG  DEA  L+  MPFEP    W +LL + + H+N  +    
Sbjct: 390 TAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIA 449

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  L  L+PE+  +++LLSNVYA++  W++V   RK +     KKE G S+IE     H+
Sbjct: 450 AEQLFRLEPENGGNHVLLSNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHV 509

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F AGE  HP   +++  L E+  EM++  +  +T   LHD+   +KE  L  HSE+LA A
Sbjct: 510 FVAGEREHPGITDVYNKLEEIYHEMRKISHRANTQCDLHDVHADQKEELLKHHSEKLAFA 569

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GL+   P   + + KNLR+CGDCH  MK++S IT+R+++VRD  R+HHFKDG CSC DF
Sbjct: 570 FGLISLPPNIPITIYKNLRICGDCHSFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDF 629

Query: 610 W 610
           W
Sbjct: 630 W 630



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 2/183 (1%)

Query: 234 DIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAK 293
           D++D   L  ++  CA    L +GK  HGL I  G  +     N ++++Y KC     A+
Sbjct: 52  DLIDVFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCAR 111

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVG 353
            +F  M  + ++SW ++I G   + +  E L L+  M   G +  E T    + AC+   
Sbjct: 112 RVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKY 171

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
            + + ++L    I+   +  S    T  LD+ ++   + +A  + + MP E    TW++L
Sbjct: 172 AIIECKQLHTIAIK-LALDSSSFVGTAFLDVYAKCNMIKDACWVFENMP-EKTSVTWSSL 229

Query: 414 LSA 416
            + 
Sbjct: 230 FAG 232


>gi|326522230|dbj|BAK04243.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 628

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/562 (38%), Positives = 311/562 (55%), Gaps = 20/562 (3%)

Query: 64  MPQRDHVSWA--SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG----- 116
           +PQR     A   +L A  +   P    + F  +     L PDH+ F  LV+A       
Sbjct: 72  LPQRPATLLAHNGLLRALARGPCPGLAFAAFREL----PLAPDHYSFTFLVRAATSLAAA 127

Query: 117 --------SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL 168
                    +    L   VHA         D  V+S  V MYA  G     RA F  I  
Sbjct: 128 ASATPVPTDVAVNLLAGSVHAAAFQHGHATDPHVQSGAVSMYAAVGDVGAVRAAFAEIVS 187

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228
            + V  TAML A +  G    A E+F+  P R+   W A+++G V+     +A   F EM
Sbjct: 188 PDVVCVTAMLGALSAGGDVDTARELFDGMPQRDHVAWNAMLTGYVRVGRSREALGLFDEM 247

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
           ++ GV  V  + L S++ ACA    LE G  +H  V + G    + +  A+VDMY+KC  
Sbjct: 248 QKAGV-AVSEVTLVSVLTACAQMGALERGMWVHSYVCSRGMRVSVTLGTALVDMYSKCGV 306

Query: 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
           +  + ++F  MR +++ +WTS + G A +G  EE L L+  M SAG++PN VTFV ++  
Sbjct: 307 VTMSMEVFETMRERNIYTWTSALSGLAMNGMGEECLELFKRMESAGMEPNGVTFVAVLRG 366

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           CS  GLV +GR  F SM + + + P L+HY C++DL  R+G LD+A + I +MP EP E 
Sbjct: 367 CSVAGLVEEGRACFDSMKDKHKVEPWLEHYGCMVDLYGRAGRLDDAVDFINSMPVEPHEG 426

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
            W ALL+A + H N ++G    + L  ++ ++ ++++LLSN+YA +  W+ VSKVR +M 
Sbjct: 427 VWGALLNASRIHNNVDLGKHAMHKLTEIESKNDAAHVLLSNIYAESHNWKGVSKVRNMMK 486

Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH 528
              VKK PG S IE     H F+ G  SHP   +I  +L E+   ++ +GY  +T  VL 
Sbjct: 487 SKGVKKMPGCSAIEVDGKVHEFFVGSKSHPRYKDIQTMLAEMSHRLRLQGYAANTKEVLF 546

Query: 529 DMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREI 588
           D+E++EKE  +  HSE+LA+A+GL+     TV+R+VKNLRVC DCH   K+IS++  REI
Sbjct: 547 DIEEEEKEGAISLHSEKLALAFGLITLPEDTVIRIVKNLRVCKDCHDYTKLISKVFDREI 606

Query: 589 VVRDATRYHHFKDGKCSCNDFW 610
           V+RD  R+HHFK G CSC D+W
Sbjct: 607 VMRDRNRFHHFKHGACSCRDYW 628


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 207/610 (33%), Positives = 337/610 (55%), Gaps = 37/610 (6%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           + H +  CA+         +H +++  G  Q   L   LI+ Y +   +  A  + +E  
Sbjct: 81  FEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETR 140

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG----SLGAT 121
           +R    W ++  A       ++ + ++  M  +  +  D F +  ++KAC     S+   
Sbjct: 141 ERTIYVWNALFRALAMVGCGKELLDLYVQMNWIG-IPSDRFTYTFVLKACVVSELSVSPL 199

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY 181
           + GK++HA  +   +  +  V ++L+D+YAK          F S+   NSV         
Sbjct: 200 QKGKEIHAHILRHGYEANIHVMTTLLDVYAK----------FGSVSYANSV--------- 240

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV-DPLV 240
                       F   P +N   W+A+++   ++   + A   F  M  E  D V + + 
Sbjct: 241 ------------FCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPNSVT 288

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           + +++ ACA  A LE GK IHG ++  G +S L + NA++ MY +C +I+  + +F  M+
Sbjct: 289 MVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVFDNMK 348

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            +DVVSW S+I     HG  ++ + +++ M+  G  P+ ++F+ ++ ACSH GLV +G+ 
Sbjct: 349 NRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLGACSHAGLVEEGKI 408

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           LF+SM+  Y I P ++HY C++DLL R+  LDEA  LI+ M FEP    W +LL +C+ H
Sbjct: 409 LFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGPTVWGSLLGSCRIH 468

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
            N E+  R +  L  L+P +  +Y+LL+++YA A MW     V KL+    ++K PG S+
Sbjct: 469 CNVELAERASTLLFELEPRNAGNYVLLADIYAEAKMWSEAKSVMKLLEARGLQKLPGCSW 528

Query: 481 IEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLF 540
           IE  +  + F + +  +P  +EI  LL +L  EMK +GYVP T+ VL+D++++EKER + 
Sbjct: 529 IEVKRKVYSFVSVDEHNPQIEEIHALLVKLSNEMKAQGYVPQTNVVLYDLDEEEKERIVL 588

Query: 541 WHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFK 600
            HSE+LAVA+GL+ +V G  +R+ KNLR+C DCH V K IS+   REI+VRD  R+HHFK
Sbjct: 589 GHSEKLAVAFGLINTVKGETIRIRKNLRLCEDCHAVTKFISKFANREILVRDVNRFHHFK 648

Query: 601 DGKCSCNDFW 610
           DG CSC D+W
Sbjct: 649 DGVCSCGDYW 658



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 141/317 (44%), Gaps = 34/317 (10%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P    F  L+ +C    +   G  VH   V S F  D  + + L++MY + G  + AR 
Sbjct: 75  NPTQRTFEHLICSCAQQNSLSDGLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARK 134

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VFD  + +    W A+  A A  G  K+ ++++ Q        W  + S         D 
Sbjct: 135 VFDETRERTIYVWNALFRALAMVGCGKELLDLYVQMN------WIGIPS---------DR 179

Query: 222 F-YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
           F Y+F              VL + V +  + + L+ GK+IH  ++  GYE+ + +   ++
Sbjct: 180 FTYTF--------------VLKACVVSELSVSPLQKGKEIHAHILRHGYEANIHVMTTLL 225

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV--SAGVKPN 338
           D+YAK   +  A  +F  M  K+ VSW+++I   A++    + L L+  M+  +    PN
Sbjct: 226 DVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLMMLEAHDSVPN 285

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
            VT V ++ AC+ +  + +G KL    I   G+   L     L+ +  R G +   + + 
Sbjct: 286 SVTMVNVLQACAGLAALEQG-KLIHGYILRRGLDSILPVLNALITMYGRCGEILMGQRVF 344

Query: 399 KAMPFEPDEPTWAALLS 415
             M    D  +W +L+S
Sbjct: 345 DNMK-NRDVVSWNSLIS 360


>gi|218188961|gb|EEC71388.1| hypothetical protein OsI_03510 [Oryza sativa Indica Group]
          Length = 706

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 220/563 (39%), Positives = 316/563 (56%), Gaps = 14/563 (2%)

Query: 56  YAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115
           YA  LL   P    ++  S+L A  +   P      F  +     L PD++ F  LV+A 
Sbjct: 150 YARLLLPRRPA-TLLAHNSLLRALARGRRPHLAFGAFRDL----PLVPDNYSFTFLVRAA 204

Query: 116 GSLGATRLGK--------QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
            +L A              VHA  +      D  V+S  V MYA  G    ARA F  I 
Sbjct: 205 TALAAAAASALDAALIAGSVHASALRHGHAGDPHVQSGAVSMYAAAGDVGAARAAFAEIA 264

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
             + V  TAM+ A A  G    A E+F+  P R+   W A+++G V +    +A   F E
Sbjct: 265 SPDVVCVTAMVGALATGGEADAARELFDGMPQRDHVAWNAMIAGYVHTGRSREALRLFDE 324

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           MR  G   V  + L S + ACA    LE GK +H    + G    + +  A++DMY+KC 
Sbjct: 325 MRHAGA-AVGEVTLVSALTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCG 383

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            + AA ++F  M  ++V +WTS + G A +G   + LAL+  M S GV+PN VTFV ++ 
Sbjct: 384 AVAAAMEVFDSMGERNVYTWTSAVSGLAMNGMGRDCLALFKRMESTGVEPNGVTFVVVLR 443

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
            CS  GLV +GR  F SM  ++GI P L+HY C++DL  R+G LD+A N I  MP EP E
Sbjct: 444 GCSMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRAGRLDDAVNFINGMPLEPHE 503

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
             W ALL+A + H+N E+G    + L++++ ++ ++++LLSN+YA +  W+ VS VR +M
Sbjct: 504 GVWGALLNASRIHKNVELGKYAMDKLMAIESKNDAAHVLLSNIYADSQNWKGVSNVRNMM 563

Query: 468 SVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
               VKK PG S IE G   H F+ G  +HP   EI  +L E++  ++ +GY+ +T  VL
Sbjct: 564 KAKGVKKVPGCSAIEVGGKVHEFFVGGKTHPRHKEIEMMLAEMNQRLRLQGYIANTKEVL 623

Query: 528 HDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
            D+E+++KE  +  HSE+LA+A+GL+       +R+VKNLRVC DCH   KMIS++  RE
Sbjct: 624 FDIEEEDKEDAISLHSEKLAIAFGLVALPEDMEIRIVKNLRVCEDCHDYTKMISKVFNRE 683

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           IV+RD  R+HHFKDG CSC D+W
Sbjct: 684 IVMRDRNRFHHFKDGACSCKDYW 706



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 43/207 (20%), Positives = 80/207 (38%), Gaps = 42/207 (20%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA+       K +H+     G+     L   LID Y KC  V  A  + + M +R+ 
Sbjct: 341 LTACAQLGALERGKWVHSCAHSRGMRLSVTLGTALIDMYSKCGAVAAAMEVFDSMGERNV 400

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            +W S ++      + +  +++F  M +   ++P+   F  +++ C              
Sbjct: 401 YTWTSAVSGLAMNGMGRDCLALFKRMESTG-VEPNGVTFVVVLRGC-------------- 445

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-----WTAMLSAYARS 184
                                +  GL +  RA FDS+K  + +      +  M+  Y R+
Sbjct: 446 ---------------------SMAGLVDEGRACFDSMKSNHGIDPWLEHYGCMVDLYGRA 484

Query: 185 GRKKDAMEIFEQAPVR-NLFLWTALVS 210
           GR  DA+      P+  +  +W AL++
Sbjct: 485 GRLDDAVNFINGMPLEPHEGVWGALLN 511


>gi|16905194|gb|AAL31064.1|AC090120_10 hypothetical protein [Oryza sativa Japonica Group]
 gi|31432781|gb|AAP54374.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 698

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 208/588 (35%), Positives = 327/588 (55%), Gaps = 35/588 (5%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LH   ++LG      + + L D Y KC L+  A  + ++MPQ+D V+W +++  Y +   
Sbjct: 144 LHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGS 203

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            +  +  F  M     +  D  VF S++ A G L    L K +H C   + F  +  V++
Sbjct: 204 LEAAVLSFRDMKREGLVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRN 263

Query: 145 SLVDMYAKC-GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           +L+DMYAK   + + +R +       N VS T+M+  Y  +    D +E           
Sbjct: 264 ALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIET----DCVE----------- 308

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
                           +A   ++E+RR+GV+  +    SS++  CA  A+LE G Q+H  
Sbjct: 309 ----------------EALVIYVELRRQGVE-PNEFTFSSMIKGCAMQALLEQGAQLHAQ 351

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           VI        F+ + +VDMY KC  I  +  +F  +  +  ++W ++I   AQHG   E 
Sbjct: 352 VIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREA 411

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           +  +D M+ +G++PN + FV L+ ACSH GLV +G K F SM E +GI P  +HY+C++D
Sbjct: 412 IQAFDRMIYSGIRPNHIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIID 471

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
              R+G LDEA   I  MP +P+   W +LL AC+   + E+G   A +L+ L+P +   
Sbjct: 472 TYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGI 531

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
           ++ LS +YAS   W+ V  VRKLM    +KK PG+S+++  K +H+F + + SHP + +I
Sbjct: 532 HVSLSGIYASLGQWEDVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDI 591

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
           +E L EL   +K  GY+PDTS +  ++E   KER L +HSER+AVA+ L+ S+P T   +
Sbjct: 592 YEKLEELTTRIKEEGYIPDTSFLPCNLEDIAKERILRYHSERIAVAFALI-SMPATKPII 650

Query: 564 VK-NLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           VK NLR+C DCH   K I ++ +R+I+VRD +R+HHF +G+CSC D+W
Sbjct: 651 VKKNLRICIDCHTAFKFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 698



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 123/418 (29%), Positives = 191/418 (45%), Gaps = 36/418 (8%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEE 63
           H    L+ C R       + LHA+++  G       L N LI  Y  C  +  A  L   
Sbjct: 22  HLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAA 81

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           MP+R+ VSW ++++  +Q NL           +    + P  F  +S  +A  +LGA   
Sbjct: 82  MPRRNAVSWTTLVSGLSQ-NLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLP 140

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G Q+H   V   F  +  V S+L DMY+KCGL + A  VFD +  K++V+WTAM+  YA+
Sbjct: 141 GAQLHCVGVRLGFDTELFVASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAK 200

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
           +G  + A+                                SF +M+REG+   D  V  S
Sbjct: 201 NGSLEAAV-------------------------------LSFRDMKREGLVGADQHVFCS 229

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG-RMRRK 302
           ++ A        L K IH  V   G+E  + + NA++DMYAK  D+ +A  +        
Sbjct: 230 VLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGW 289

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           +VVS TS+I G  +    EE L +Y E+   GV+PNE TF  +I  C+   L+ +G +L 
Sbjct: 290 NVVSGTSMIDGYIETDCVEEALVIYVELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLH 349

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
             +I+   I  S    T L+D+  + G +  +  L   + +  D   W A+++    H
Sbjct: 350 AQVIKTDLIRDSFVGST-LVDMYGKCGLISLSMQLFNEIEYRTD-IAWNAVINVFAQH 405



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 95/175 (54%), Gaps = 2/175 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR-DHVSWASILTAYNQ 81
           K++H  + K G      + N LID Y K   V+ A  +L+  P   + VS  S++  Y +
Sbjct: 244 KSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIE 303

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
            +  ++ + I+   L    ++P+ F F+S++K C        G Q+HA  + +    D  
Sbjct: 304 TDCVEEALVIY-VELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSF 362

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           V S+LVDMY KCGL + +  +F+ I+ +  ++W A+++ +A+ G  ++A++ F++
Sbjct: 363 VGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDR 417



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 15/187 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ CA   +      LHAQ+IK  L +   + +TL+D YGKC L+  +  L  E+  R  
Sbjct: 333 IKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTD 392

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----- 124
           ++W +++  + Q    ++ I  F  M+    ++P+H  F SL+ AC   G    G     
Sbjct: 393 IAWNAVINVFAQHGHGREAIQAFDRMI-YSGIRPNHIAFVSLLTACSHAGLVDEGLKYFY 451

Query: 125 --KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAY 181
             K+ H    + P    +   S ++D Y + G  + A      + +K N+  W ++L A 
Sbjct: 452 SMKEAHG---IEP---KEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGAC 505

Query: 182 ARSGRKK 188
              G K+
Sbjct: 506 RMRGSKE 512


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/592 (36%), Positives = 326/592 (55%), Gaps = 33/592 (5%)

Query: 19  ALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           AL  K +H   +K        +   L+D Y KC  ++ AH + E +P  D + W+ +++ 
Sbjct: 265 ALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISR 324

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
           Y Q+   ++   +F  M+    + P+ F  + +++AC ++    LG+Q+H   +   +  
Sbjct: 325 YAQSCQNEQAFEMFLRMMR-SFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYES 383

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           +  V ++L+DMYAKC              ++NS                   +EIF    
Sbjct: 384 ELFVGNALMDMYAKCR------------NMENS-------------------LEIFSSLQ 412

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
             N   W  ++ G  QS    DA   F EMR   + +   +  SS++ ACAN + ++   
Sbjct: 413 DANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHM-LSTQVTFSSVLRACANTSSIKHAV 471

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           QIH L+    + +   + N+++D YAKC  I  A  +F  +   DVVSW SII   A HG
Sbjct: 472 QIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHG 531

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
           +A   L L+D M  + +K N+VTFV L+  C   GLV +G  LF SM+ D+ I PS++HY
Sbjct: 532 RATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHY 591

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
           TC++ LL R+G L +A   I  +P  P    W ALLS+C  H+N  +G   A  +L ++P
Sbjct: 592 TCIVRLLGRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEP 651

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
            D ++Y+LLSN+YA+A +   V+  RK M  + VKKE G S++E     H F  G   HP
Sbjct: 652 HDETTYVLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWVEIKGEVHAFSVGSADHP 711

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
               I  +L  L+ +  R GYVPD + VLHD++++EK R L+ HSERLA+AYGL  + PG
Sbjct: 712 DMRIINAMLEWLNLKASREGYVPDINVVLHDVDEEEKARMLWVHSERLALAYGLSMTPPG 771

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             +R++KNLR C DCH + K+IS+I +REI+VRD  R+HHF++G CSC D+W
Sbjct: 772 HPIRIMKNLRSCLDCHTMFKVISKIVQREIIVRDINRFHHFEEGICSCGDYW 823



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 124/396 (31%), Positives = 212/396 (53%), Gaps = 35/396 (8%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA   KLG  +   +   LIDAY  C  V +A  + + +  +D V+W ++++ Y++ ++
Sbjct: 170 IHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDI 229

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
           P+  ++ FS M  +   +P+ FV  S +KA   L +  LGK +H C V + +  +  V  
Sbjct: 230 PEYALNTFSKM-RMTGFKPNPFVLTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGG 288

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +L+DMYAKCG   +A A+F+ I   + + W+ ++S YA+S + + A E+           
Sbjct: 289 ALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEM----------- 337

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
                               F+ M R  V + +   LS ++ ACAN A LELG+QIH L 
Sbjct: 338 --------------------FLRMMRSFV-VPNEFSLSGVLQACANIAFLELGEQIHNLA 376

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           I LGYES LF+ NA++DMYAKC ++  + +IF  ++  + VSW +IIVG  Q G AE+ L
Sbjct: 377 IKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDAL 436

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
           +++ EM +A +   +VTF  ++ AC++   +    ++  S+IE             L+D 
Sbjct: 437 SVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAVQI-HSLIEKSTFNNDTIVCNSLIDT 495

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            ++ G + +A  + +++  E D  +W +++SA   H
Sbjct: 496 YAKCGFIRDALKVFESI-VECDVVSWNSIISAYALH 530



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 195/409 (47%), Gaps = 41/409 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLG-LHQYGPL-PNTLIDAYGKCDLVQYAHHLLEEMPQR 67
           L+ C     A   + +HA++++ G + Q      N L++ Y K   +  A  L + MP+R
Sbjct: 52  LQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPER 111

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           + VS+ +++  Y      ++ + +F   L  +  + +HFV  +++K   ++ A  L   +
Sbjct: 112 NRVSFVTLMQGYALRGEFEEALELFRR-LQREGHEVNHFVLTTILKVLVTMDAPGLACGI 170

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           HAC        +  V ++L+D Y+ CG   +AR VFD I  K++V+WTAM+S Y      
Sbjct: 171 HACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCY------ 224

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID--AFYSFIEMRREGVDIVDPLVLSSIV 245
                                      S N+I   A  +F +MR  G    +P VL+S +
Sbjct: 225 ---------------------------SENDIPEYALNTFSKMRMTGFK-PNPFVLTSAL 256

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            A    +   LGK IHG  +   Y++   +  A++DMYAKC DI  A  IF  +   DV+
Sbjct: 257 KAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVI 316

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
            W+ +I   AQ  Q E+   ++  M+ + V PNE +  G++ AC+++  +  G ++    
Sbjct: 317 LWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLA 376

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           I+  G    L     L+D+ ++  +++ +  +  ++  + +E +W  ++
Sbjct: 377 IK-LGYESELFVGNALMDMYAKCRNMENSLEIFSSLQ-DANEVSWNTII 423



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 1/187 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA        + +H   IKLG      + N L+D Y KC  ++ +  +   +   + 
Sbjct: 357 LQACANIAFLELGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANE 416

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +I+  Y Q+   +  +S+F  M A   L      F+S+++AC +  + +   Q+H+
Sbjct: 417 VSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLST-QVTFSSVLRACANTSSIKHAVQIHS 475

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               S F +D +V +SL+D YAKCG   +A  VF+SI   + VSW +++SAYA  GR  +
Sbjct: 476 LIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATN 535

Query: 190 AMEIFEQ 196
           A+E+F++
Sbjct: 536 ALELFDR 542



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 156/347 (44%), Gaps = 56/347 (16%)

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV-------LSPFCDDDVVKSSLVD 148
           LAL KL  D +  A  ++ C + G  R G+ VHA  V       L  FC      + L++
Sbjct: 38  LALPKL--DSYACARFLQRCIARGDARAGRAVHARVVQRGGVAQLDTFC-----ANVLLN 90

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
            YAK G    AR +FD +  +N VS+  ++  YA  G  ++A+E+F +            
Sbjct: 91  FYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRR------------ 138

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
                              ++REG + V+  VL++I+          L   IH     LG
Sbjct: 139 -------------------LQREGHE-VNHFVLTTILKVLVTMDAPGLACGIHACACKLG 178

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
           ++   F+  A++D Y+ C  +  A+ +F  +  KD V+WT+++   +++   E  L  + 
Sbjct: 179 HDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFS 238

Query: 329 EMVSAGVKPNEVTFVGLIYA--CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLS 386
           +M   G KPN       + A  C    L+GKG     S+   Y   P +     LLD+ +
Sbjct: 239 KMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIH-GCSVKTLYDTEPHVG--GALLDMYA 295

Query: 387 RSGHLDEAENLIKAMPFEPDEPTWAALLS----ACKHHRNTEMGTRV 429
           + G +++A  + + +P + D   W+ L+S    +C++ +  EM  R+
Sbjct: 296 KCGDIEDAHAIFEMIPHD-DVILWSFLISRYAQSCQNEQAFEMFLRM 341



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 85/214 (39%), Gaps = 42/214 (19%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR CA          +H+ I K   +    + N+LID Y KC  ++ A  + E + + D 
Sbjct: 458 LRACANTSSIKHAVQIHSLIEKSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDV 517

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW SI++AY         + +F  M   D ++ +   F SL+  CGS            
Sbjct: 518 VSWNSIISAYALHGRATNALELFDRMNKSD-IKANDVTFVSLLSVCGST----------- 565

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-----WTAMLSAYARS 184
                                   GL N    +F+S+ + + +      +T ++    R+
Sbjct: 566 ------------------------GLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRA 601

Query: 185 GRKKDAMEIFEQAP-VRNLFLWTALVSGLVQSRN 217
           GR  DA++     P   +  +W AL+S  V  +N
Sbjct: 602 GRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKN 635


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/599 (35%), Positives = 333/599 (55%), Gaps = 42/599 (7%)

Query: 13  CARHQI-ALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVS 71
           CAR  I    +KTL+     +G          L+D Y KC  ++ A    E +P  D + 
Sbjct: 261 CARQGIHGCAIKTLNDTEPHVG--------GALLDMYAKCGDIKDARLAFEMIPYDDVIL 312

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
            + +++ Y Q+N  ++   +F  ++    L P+ +  +S+++AC ++     GKQ+H   
Sbjct: 313 LSFMISRYAQSNQNEQAFELFLRLMRSSVL-PNEYSLSSVLQACTNMVQLDFGKQIHNHA 371

Query: 132 VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
           +      D  V ++L+D YAKC   +++  +F S++  N VSW  ++  +++SG  ++A+
Sbjct: 372 IKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEAL 431

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
            +                               F EM+   +     +  SS++ ACA+ 
Sbjct: 432 SV-------------------------------FCEMQAAQMPCTQ-VTYSSVLRACAST 459

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
           A +    QIH  +    + +   I N+++D YAKC  I  A  +F  +  +D++SW +II
Sbjct: 460 ASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAII 519

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G A HGQA + L L+D M  + V+ N++TFV L+  C   GLV  G  LF SM  D+GI
Sbjct: 520 SGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCSTGLVNHGLSLFDSMRIDHGI 579

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
            PS++HYTC++ LL R+G L++A   I  +P  P    W ALLS+C  H+N  +G   A 
Sbjct: 580 KPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAE 639

Query: 432 HLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFY 491
            +L ++P+D ++Y+LLSN+YA+A     V+ +RK M  + V+K PG S++E     H F 
Sbjct: 640 KILEIEPQDETTYVLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWVEIKGEIHAFS 699

Query: 492 AGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYG 551
            G   HP    I  +L  L+ +  R GY+PD + VLHD+++++K R L+ HSERLA+AYG
Sbjct: 700 VGSVDHPDMRVINAMLEWLNLKTSREGYIPDINVVLHDVDKEQKTRMLWVHSERLALAYG 759

Query: 552 LLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           L+ + PG  +R++KNLR C DCH    +IS+I KREI+VRD  R+HHF+DGKCSC D+W
Sbjct: 760 LVMTPPGHPIRILKNLRSCLDCHTAFTVISKIVKREIIVRDINRFHHFEDGKCSCGDYW 818



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 218/467 (46%), Gaps = 61/467 (13%)

Query: 9   RLRVCARHQIALTVKTLHAQIIKLGLHQYGPL----PNTLIDAYGKCDLVQYAHHLLEEM 64
           +L+ C     A   + +H  +++ G    G L     N L++ YGK   +  A  L + M
Sbjct: 65  QLQGCIARGDARGGRAVHGHVVRRG--GVGRLDLFCANVLLNMYGKLGPLASARRLFDRM 122

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           P+R+ VS+ +++ A+ Q    +   ++F   L  +  + + FV  +++K   ++ A  L 
Sbjct: 123 PERNMVSFVTLVQAHAQRGDFEAAAALFRR-LRWEGHEVNQFVLTTMLKLAIAMDAAGLA 181

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAY--- 181
             VH+C        +  V S L+D Y+ C L ++A  VF+ I  K++V WTAM+S Y   
Sbjct: 182 GGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSEN 241

Query: 182 ------------------------------------------------ARSGRKKDAMEI 193
                                                           A+ G  KDA   
Sbjct: 242 DCPENAFRCAQSCSLLAISCARQGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLA 301

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
           FE  P  ++ L + ++S   QS     AF  F+ + R  V + +   LSS++ AC N   
Sbjct: 302 FEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSV-LPNEYSLSSVLQACTNMVQ 360

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L+ GKQIH   I +G+ES LF+ NA++D YAKC+D+ ++  IF  +R  + VSW +I+VG
Sbjct: 361 LDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVG 420

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
            +Q G  EE L+++ EM +A +   +VT+  ++ AC+    +    ++  S IE      
Sbjct: 421 FSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCS-IEKSTFNN 479

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
                  L+D  ++ G++ +A  + + +  E D  +W A++S    H
Sbjct: 480 DTVIGNSLIDTYAKCGYIRDALKVFQHL-MERDIISWNAIISGYALH 525



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/218 (21%), Positives = 86/218 (39%), Gaps = 42/218 (19%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   LR CA          +H  I K   +    + N+LID Y KC  ++ A  + + + 
Sbjct: 449 YSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLM 508

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +RD +SW +I++ Y         + +F  M     ++ +   F +L+  C S        
Sbjct: 509 ERDIISWNAIISGYALHGQAADALELFDRM-NKSNVESNDITFVALLSVCCST------- 560

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-----WTAMLSA 180
                                       GL N+  ++FDS+++ + +      +T ++  
Sbjct: 561 ----------------------------GLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRL 592

Query: 181 YARSGRKKDAMEIFEQAP-VRNLFLWTALVSGLVQSRN 217
             R+GR  DA++     P   +  +W AL+S  +  +N
Sbjct: 593 LGRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKN 630


>gi|356537109|ref|XP_003537073.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Glycine max]
          Length = 630

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/610 (36%), Positives = 337/610 (55%), Gaps = 49/610 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA   + L    LHA +I+ G        ++LI+ Y KC L  +A  + +EMP    
Sbjct: 61  LKSCAFLSLPLAASQLHAHVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMPN-PT 119

Query: 70  VSWASILTAYNQANLPQKTISIFSTML--ALDKLQPDHFVFA----SLVKACGSLGATRL 123
           + + ++++ Y+  + P   + +F  M     D L  D  V A    SLV  C       +
Sbjct: 120 ICYNAMISGYSFNSKPLHAVCLFRKMRREEEDGLDVDVNVNAVTLLSLVSGCSVATHLTI 179

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G  +H C V   F  D  V +SLV MY KCG    AR                       
Sbjct: 180 GVCLHGCCVRFGFVTDLAVANSLVTMYVKCGEVELAR----------------------- 216

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
                   ++F++  VR+L  W A++SG  Q+ +       + EM+  GV   D + L  
Sbjct: 217 --------KVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVS-ADAVTLLG 267

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++ ACAN     +G+++   +   G+    F+ NA+V+MYA+C ++  A+++F R   K 
Sbjct: 268 VMSACANLGAQGIGREVEREIERRGFGCNPFLRNALVNMYARCGNLTRAREVFDRSGEKS 327

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
           VVSWT+II G   HG  E  L L+DEMV + V+P++  FV ++ ACSH GL  +G + FK
Sbjct: 328 VVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSACSHAGLTDRGLEYFK 387

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNT 423
            M   YG+ P  +HY+C++DLL R+G L+EA NLIK+M  +PD   W ALL ACK H+N 
Sbjct: 388 EMERKYGLQPGPEHYSCVVDLLGRAGRLEEAVNLIKSMKVKPDGAVWGALLGACKIHKNA 447

Query: 424 EMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEF 483
           E+      H++ L+P +   Y+LLSN+Y  A   + VS+VR +M   +++K+PGYSY+E+
Sbjct: 448 EIAELAFQHVVELEPTNIGYYVLLSNIYTDANNLEGVSRVRVMMRERKLRKDPGYSYVEY 507

Query: 484 GKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFW-- 541
               ++FY+G+ SHP   +I+ +L EL++ +K   + P+         Q   E  L    
Sbjct: 508 KGKMNLFYSGDLSHPQTKQIYRMLDELESLVKEV-HPPNEKC------QGRSEELLIGTG 560

Query: 542 -HSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFK 600
            HSE+LA+A+ LL +  GT + V+KNLRVC DCH+ +K++S+I  R+ +VRDATR+HHF+
Sbjct: 561 VHSEKLAIAFALLNTKSGTEITVMKNLRVCVDCHLFIKLVSKIVNRQFIVRDATRFHHFR 620

Query: 601 DGKCSCNDFW 610
           DG CSC D+W
Sbjct: 621 DGICSCKDYW 630



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 178/403 (44%), Gaps = 79/403 (19%)

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN 170
           L+K+C  L       Q+HA  + +    D   +SSL++ YAKC L ++AR VFD +    
Sbjct: 60  LLKSCAFLSLPLAASQLHAHVIRTGSQPDPYTRSSLINTYAKCSLHHHARKVFDEMP-NP 118

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
           ++ + AM+S Y+           F   P+  + L                    F +MRR
Sbjct: 119 TICYNAMISGYS-----------FNSKPLHAVCL--------------------FRKMRR 147

Query: 231 E---GVDI---VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284
           E   G+D+   V+ + L S+V  C+    L +G  +HG  +  G+ + L ++N++V MY 
Sbjct: 148 EEEDGLDVDVNVNAVTLLSLVSGCSVATHLTIGVCLHGCCVRFGFVTDLAVANSLVTMYV 207

Query: 285 KCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVG 344
           KC ++  A+ +F  M  +D+++W ++I G AQ+G A   L +Y EM  +GV  + VT +G
Sbjct: 208 KCGEVELARKVFDEMLVRDLITWNAMISGYAQNGHARCVLEVYSEMKLSGVSADAVTLLG 267

Query: 345 LIYACSHVGLVGKG-RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK---- 399
           ++ AC+++G  G G     +     +G  P L++   L+++ +R G+L  A  +      
Sbjct: 268 VMSACANLGAQGIGREVEREIERRGFGCNPFLRN--ALVNMYARCGNLTRAREVFDRSGE 325

Query: 400 ------------------------------AMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
                                              PD+  + ++LSAC H   T+ G   
Sbjct: 326 KSVVSWTAIIGGYGIHGHGEVALELFDEMVESAVRPDKTVFVSVLSACSHAGLTDRGLEY 385

Query: 430 ANHL---LSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSV 469
              +     L+P  P  Y  + ++   A   +    + K M V
Sbjct: 386 FKEMERKYGLQP-GPEHYSCVVDLLGRAGRLEEAVNLIKSMKV 427


>gi|225441789|ref|XP_002283735.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
           [Vitis vinifera]
          Length = 564

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/567 (38%), Positives = 324/567 (57%), Gaps = 37/567 (6%)

Query: 45  IDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKT-ISIFSTMLALDKLQP 103
           +  YG  D   YA  L  ++ + +  SW S++   +Q+  P K  + +F  M+      P
Sbjct: 34  LSPYGDID---YARKLFSQIQRPNIFSWNSMIRGCSQSQTPSKEPVILFRKMVRRGYPNP 90

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           + F  A ++KAC  + A   G+QVHA  + S F     V+++LV+ YAKC          
Sbjct: 91  NTFTMAFVLKACSIVSALEEGQQVHANVLKSGFGSSPFVETALVNFYAKC---------- 140

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           + I L                     A ++F++   RNL  W+ ++SG  +     +A  
Sbjct: 141 EDIVL---------------------ASKVFDEITDRNLVAWSTMISGYARIGLVNEALG 179

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            F +M++ GV + D + + S++ ACA    L+ GK +H  +     E+ L +S A+V+MY
Sbjct: 180 LFRDMQKAGV-VPDEVTMVSVISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMY 238

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           AKC  I  AK++F  M  KD  +W+S+IVG A +G AE+ L  +  M  A VKPN VTF+
Sbjct: 239 AKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAKVKPNHVTFI 298

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
           G++ AC+H GLV +GR+ + SM+E +GI PS++ Y C++DLL R+  +++A  L++ MP 
Sbjct: 299 GVLSACAHSGLVSEGRRYWSSMLE-FGIVPSMELYGCMVDLLCRASLVEDACTLVETMPI 357

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
            P+   W  LL  CK  +N +    VA  LL L+P +  +YILLSN+YAS + W+ +S+V
Sbjct: 358 SPNPVIWRTLLVGCKKSKNLDKSEVVAQRLLELEPHNAENYILLSNLYASMSQWEKMSQV 417

Query: 464 RKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDT 523
           RK M  M +K  PG S IE     H F  G+ SHP   E+ E+L ++   +   G+ P  
Sbjct: 418 RKKMKGMGIKAVPGCSSIEVDGLVHEFVMGDWSHPEAMEVREILRDISKRVHAVGHQPGI 477

Query: 524 SSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRI 583
           S VLH++  +EKE  L  HSERLA+AYGLLK+     +R+VKNLRVCGDCH V K+IS  
Sbjct: 478 SDVLHNVVDEEKENALCEHSERLAIAYGLLKTKTPMAIRIVKNLRVCGDCHEVTKIISAE 537

Query: 584 TKREIVVRDATRYHHFKDGKCSCNDFW 610
            +REI+VRD  R+H F +G CSC DFW
Sbjct: 538 YRREIIVRDRVRFHKFVNGSCSCRDFW 564



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 54/182 (29%), Positives = 104/182 (57%), Gaps = 6/182 (3%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA ++K G      +   L++ Y KC+ +  A  + +E+  R+ V+W+++++ Y + 
Sbjct: 112 QQVHANVLKSGFGSSPFVETALVNFYAKCEDIVLASKVFDEITDRNLVAWSTMISGYARI 171

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV- 141
            L  + + +F  M     + PD     S++ AC + GA   GK VHA ++     + D+ 
Sbjct: 172 GLVNEALGLFRDMQKAG-VVPDEVTMVSVISACAASGALDTGKWVHA-YINKQLIETDLE 229

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF---EQAP 198
           + ++LV+MYAKCG    A+ VFD++ +K++ +W++M+   A +G  +DA+E F   E+A 
Sbjct: 230 LSTALVNMYAKCGCIERAKEVFDAMPVKDTKAWSSMIVGLAINGLAEDALEEFFRMEEAK 289

Query: 199 VR 200
           V+
Sbjct: 290 VK 291



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 81/188 (43%), Gaps = 3/188 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CA      T K +HA I K  +     L   L++ Y KC  ++ A  + + MP +D 
Sbjct: 200 ISACAASGALDTGKWVHAYINKQLIETDLELSTALVNMYAKCGCIERAKEVFDAMPVKDT 259

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            +W+S++       L +  +  F  M    K++P+H  F  ++ AC   G    G++  +
Sbjct: 260 KAWSSMIVGLAINGLAEDALEEFFRMEEA-KVKPNHVTFIGVLSACAHSGLVSEGRRYWS 318

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGRKK 188
             +         +   +VD+  +  L  +A  + +++ +  N V W  +L    +S +  
Sbjct: 319 SMLEFGIVPSMELYGCMVDLLCRASLVEDACTLVETMPISPNPVIWRTLLVGCKKS-KNL 377

Query: 189 DAMEIFEQ 196
           D  E+  Q
Sbjct: 378 DKSEVVAQ 385


>gi|224111152|ref|XP_002315764.1| predicted protein [Populus trichocarpa]
 gi|222864804|gb|EEF01935.1| predicted protein [Populus trichocarpa]
          Length = 452

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/452 (41%), Positives = 282/452 (62%), Gaps = 1/452 (0%)

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A+ +F  I  +N V  TAM+S Y+R GR +DA  IF+Q   ++L  W+A++SG  +S   
Sbjct: 2   AQKLFTKISSRNLVVLTAMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKP 61

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            +A   F EM+  G+   D + + S++ ACA   VL+  K IH  V   G    L ++NA
Sbjct: 62  QEALNLFSEMQVFGIK-PDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNA 120

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++DMYAKC ++ AA+ +F +M+ ++V+SWTS+I   A HG A   L  + +M    +KPN
Sbjct: 121 LIDMYAKCGNLGAARGVFEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENIKPN 180

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
            VTFVG++YACSH GLV +GR+ F SM  ++ ITP  +HY C++DL  R+  L +A  L+
Sbjct: 181 GVTFVGVLYACSHAGLVEEGRRTFASMTNEHNITPKHEHYGCMVDLFGRANLLRDALELV 240

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
           + MP  P+   W +L++AC+ H   E+G   A  +L L+P+   + + LSN+YA    WQ
Sbjct: 241 ETMPLAPNVVIWGSLMAACQIHGENELGEFAAKQVLELEPDHDGALVQLSNIYAKDRRWQ 300

Query: 459 HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
            V ++R LM    + KE G S IE     + F   +  H   D+I+E L E+  E+K  G
Sbjct: 301 DVGELRNLMKQRGISKERGCSRIELNNQVYEFVMADKKHKQADKIYEKLDEVVKELKLVG 360

Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
           Y P+T SVL D+E++ K+  + WHSE+LA+ YGL+    G+ +R+VKNLRVC DCH  +K
Sbjct: 361 YTPNTRSVLVDVEEEGKKEVVLWHSEKLALCYGLMGEGKGSCIRIVKNLRVCEDCHTFIK 420

Query: 579 MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++S++   EI+VRD TR+HH+K G CSCND+W
Sbjct: 421 LVSKVYGMEIIVRDRTRFHHYKAGVCSCNDYW 452



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 48/160 (30%), Positives = 90/160 (56%), Gaps = 1/160 (0%)

Query: 43  TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQ 102
            +I  Y +   V+ A  + ++M ++D V W+++++ Y +++ PQ+ +++FS M     ++
Sbjct: 19  AMISGYSRVGRVEDARLIFDQMEEKDLVCWSAMISGYAESDKPQEALNLFSEMQVFG-IK 77

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAV 162
           PD     S++ AC  LG     K +H     +       V ++L+DMYAKCG    AR V
Sbjct: 78  PDQVTILSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGV 137

Query: 163 FDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           F+ ++ +N +SWT+M++A+A  G   +A++ F Q    N+
Sbjct: 138 FEKMQSRNVISWTSMINAFAIHGDASNALKFFYQMKDENI 177



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/179 (24%), Positives = 82/179 (45%), Gaps = 9/179 (5%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L  +  CAR  +    K +H  + K GL    P+ N LID Y KC  +  A  + E+M  
Sbjct: 84  LSVISACARLGVLDRAKWIHMYVDKNGLGGALPVNNALIDMYAKCGNLGAARGVFEKMQS 143

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           R+ +SW S++ A+         +  F  M   + ++P+   F  ++ AC   G    G++
Sbjct: 144 RNVISWTSMINAFAIHGDASNALKFFYQMKD-ENIKPNGVTFVGVLYACSHAGLVEEGRR 202

Query: 127 VHACFV----LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
             A       ++P  +       +VD++ +  L  +A  + +++ L  N V W ++++A
Sbjct: 203 TFASMTNEHNITPKHEH---YGCMVDLFGRANLLRDALELVETMPLAPNVVIWGSLMAA 258


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 219/606 (36%), Positives = 327/606 (53%), Gaps = 34/606 (5%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   L  C+     L  K +H  I++        + N LI  Y KC  ++ +  L   M 
Sbjct: 173 YAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNALITMYAKCGSLKDSKSLFLTMD 232

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            +D VSW +++ AY      +   S+F  M  L    PD + F+S++ AC S      G+
Sbjct: 233 VKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGH-TPDIYTFSSILGACASPKRLEDGR 291

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            +H       F  D  ++++L+ M+ +CG   +AR  F SI+ K   +W  ML+AYA+  
Sbjct: 292 MLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFD 351

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
           + KDA+ ++     +N+ L                          EG    D    SS+V
Sbjct: 352 KGKDALFLY-----KNMLL--------------------------EGF-TPDRFTFSSVV 379

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            +CA+   L  GK IH    + G+E  + +  A+V+MYAKC  +  AK  F  +  KDVV
Sbjct: 380 DSCASLGALREGKFIHECSTSCGFEKDVILGTALVNMYAKCGSLADAKKSFDGISNKDVV 439

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           SW+++I  +AQHG AEE L L   M   G+  NEVT   +++ACSH G + +G   F  +
Sbjct: 440 SWSAMIAASAQHGHAEEALELSHLMNLQGIAQNEVTASSVLHACSHGGRLYEGIDYFMGL 499

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
            +D+GI    ++    +DLL R+G L EAE+++  MPF+        LL  CK H +   
Sbjct: 500 SQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLHTMPFKVSFVALVTLLGGCKVHGDVRR 559

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G  +   +++L+PE+P SY+LL+N+YA+A  W  V+K+R+ M    VK++ G S IE+  
Sbjct: 560 GKALTKRIVALEPENPGSYVLLNNMYAAAGRWDDVAKLRRYMRKKGVKRQTGCSSIEYRD 619

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMK-RRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
             + F  G+TS+P   EI   L  L + MK   GYVPDT  V HD+   +KE  L +HSE
Sbjct: 620 KIYEFSVGDTSNPRNLEIRAELERLYSRMKEEEGYVPDTRDVFHDVSDDKKEELLKFHSE 679

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           ++A+ +GL+ S PG+ LR++KNLRVC DCH V K+ S+IT R I+VRD TR+HHF+ G C
Sbjct: 680 KMAMGFGLITSPPGSTLRIIKNLRVCSDCHTVGKLASKITGRRIIVRDGTRFHHFEGGIC 739

Query: 605 SCNDFW 610
           SC D+W
Sbjct: 740 SCGDYW 745



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 178/378 (47%), Gaps = 36/378 (9%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L N +I  YGKC   + A  + + + QR+  SW+ ++  Y Q  + Q+ + ++  M+   
Sbjct: 4   LANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVR-K 62

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           ++  D +  +S++ AC  L     G+ V        F  D VV +SL+ ++AKCG    A
Sbjct: 63  EISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEA 122

Query: 160 RAVFDSI-KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
            +VF S+  +++ +S TAM+ AY R G+   A++ +          W             
Sbjct: 123 ESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTY----------W------------- 159

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
                   +MR +G++  D    ++I+GAC++   L  GK IH  ++   +   + + NA
Sbjct: 160 --------KMRSQGLE-PDAFTYAAILGACSSPDFLLDGKHIHKHILESKHFGNISVRNA 210

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++ MYAKC  +  +K +F  M  KDVVSW ++I     +G  ++  +L+  M + G  P+
Sbjct: 211 LITMYAKCGSLKDSKSLFLTMDVKDVVSWNAMIAAYTLYGHDKDAFSLFHRMCTLGHTPD 270

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
             TF  ++ AC+    +  GR +    I   G          L+ + +R G L+ A    
Sbjct: 271 IYTFSSILGACASPKRLEDGR-MLHVRITARGFDRDFAMQNNLISMFTRCGSLESARRYF 329

Query: 399 KAMPFEPDEPTWAALLSA 416
            ++  + +   W  +L+A
Sbjct: 330 YSIE-KKELGAWNTMLAA 346



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 141/281 (50%), Gaps = 39/281 (13%)

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  + + ++ MY KC  P +AR VFD IK +N+ SW+ ++  Y ++   ++A+E+++   
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYK--- 57

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
                                       EM R+ + I D   LSS++ AC     +E G+
Sbjct: 58  ----------------------------EMVRKEISI-DAYTLSSVLAACTKLLDVEEGR 88

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF---GRMRRKDVVSWTSIIVGTA 315
            +      LG+E  + ++ +++ ++AKC  +  A+ +F   G MR  D++S T++I    
Sbjct: 89  MVQRKAEELGFEKDVVVATSLIHLFAKCGCLEEAESVFRSMGAMR--DIISVTAMIGAYV 146

Query: 316 QHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSL 375
           +HG+ +  L  Y +M S G++P+  T+  ++ ACS    +  G+ + K ++E      ++
Sbjct: 147 RHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACSSPDFLLDGKHIHKHILESKHF-GNI 205

Query: 376 QHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
                L+ + ++ G L ++++L   M  + D  +W A+++A
Sbjct: 206 SVRNALITMYAKCGSLKDSKSLFLTMDVK-DVVSWNAMIAA 245



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 36/199 (18%)

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
           F++N I+ MY KC     A+ +F R+++++  SW+ ++    Q+   +E L +Y EMV  
Sbjct: 3   FLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMVRK 62

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
            +  +  T   ++ AC+ +  V +GR + +   E+ G    +   T L+ L ++ G L+E
Sbjct: 63  EISIDAYTLSSVLAACTKLLDVEEGR-MVQRKAEELGFEKDVVVATSLIHLFAKCGCLEE 121

Query: 394 AENLIKAM-----------------------------------PFEPDEPTWAALLSACK 418
           AE++ ++M                                     EPD  T+AA+L AC 
Sbjct: 122 AESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGACS 181

Query: 419 HHRNTEMGTRVANHLLSLK 437
                  G  +  H+L  K
Sbjct: 182 SPDFLLDGKHIHKHILESK 200


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 223/633 (35%), Positives = 338/633 (53%), Gaps = 63/633 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR CA      + + +H  I++ G+     L N ++D Y KC     A      M Q+D 
Sbjct: 133 LRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDA 192

Query: 70  VSWASILTA-------------YNQANLPQKTISIFSTML-----------ALDKLQP-- 103
            SW  ++ A             +++++L  + +S ++T++           AL +LQ   
Sbjct: 193 TSWNIVIRACLQDGDLVGATQLFDESSL--RDVSSWNTIVSGLMRHGHTTEALGRLQQMV 250

Query: 104 ------DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
                  ++ ++ +    G L +  LG+Q+H   V++   +D  V  SL+DMY KCG   
Sbjct: 251 RAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEME 310

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
           +A ++FD                     R  D  E  +       F W+ +V+G VQ+  
Sbjct: 311 SALSIFD---------------------RWSDFTEDRQ-------FAWSTMVAGYVQNGR 342

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
           E +A   F  M REGV      +L+S+  ACAN  ++E G+Q+HG V  LG+     +++
Sbjct: 343 EEEALEFFRRMLREGVP-AGQFILTSVASACANAGMVEQGRQVHGFVEKLGHRFDAPLAS 401

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           AIVDMY+K   +  A  IF   + K+V  WT+++   A HGQ    L ++  M +  + P
Sbjct: 402 AIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYASHGQGRMALEIFSRMKAEKIMP 461

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           NE+T V ++ ACSH GLV  G   F  M E+YGI P+ +HY C++DL  R+G LD+A+N 
Sbjct: 462 NEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNTEHYNCMVDLYGRAGLLDKAKNF 521

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           I+      +   W  LLSAC+ H++ E     +  L+ L+  D  SY+L+SN+YA+   W
Sbjct: 522 IEENKISHEAVVWKTLLSACRLHKHIEYAQLASEKLVQLEQYDAGSYVLMSNMYATNNKW 581

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
               K+R  M    V+K+PG S+I      H F A +TSHP   EI+  L +L   +K  
Sbjct: 582 LDTFKLRSSMKERRVRKQPGQSWIHLKNVVHRFVALDTSHPRSAEIYAYLEKLMERLKEM 641

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GY   T  V+HD+E++++E  L +HSE+LA+A+G++ +  GT LR+ KNLRVC DCH  +
Sbjct: 642 GYTSRTDLVVHDIEEEQRETSLKFHSEKLAIAFGIISTPVGTALRIFKNLRVCEDCHEAI 701

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K I+R T REIVVRD  R+HHFKDG+CSC DFW
Sbjct: 702 KFITRATDREIVVRDLYRFHHFKDGQCSCEDFW 734



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 204/419 (48%), Gaps = 17/419 (4%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H Q ++      G +P++ + A G    +  AH + +  P R   +W SI++   + 
Sbjct: 53  KAIHRQSVR------GCVPSSSVIARG----LHNAHRVFDGTPTRSLPAWTSIISGCARE 102

Query: 83  NLPQKTISIFSTML-ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
                 +  F+ ML       P+ FV A +++ C  LG    G+++H   + S  C D V
Sbjct: 103 GRHADGMRAFAEMLDECGATAPNAFVLAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVV 162

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           + ++++DMYAKCG    AR  F ++  K++ SW  ++ A  + G    A ++F+++ +R+
Sbjct: 163 LCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQDGDLVGATQLFDESSLRD 222

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           +  W  +VSGL++  +  +A     +M R GV   +    S +       +  +LG+Q+H
Sbjct: 223 VSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSN-YTYSMVFALAGLLSSRDLGRQLH 281

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR---MRRKDVVSWTSIIVGTAQHG 318
           G V+    E   F+  +++DMY KC ++ +A  IF R          +W++++ G  Q+G
Sbjct: 282 GRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNG 341

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
           + EE L  +  M+  GV   +     +  AC++ G+V +GR++    +E  G        
Sbjct: 342 REEEALEFFRRMLREGVPAGQFILTSVASACANAGMVEQGRQV-HGFVEKLGHRFDAPLA 400

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
           + ++D+ S+SG L++A  + ++     +   W  +L +   H    M   + + + + K
Sbjct: 401 SAIVDMYSKSGSLEDACRIFRSAQ-TKNVALWTTMLCSYASHGQGRMALEIFSRMKAEK 458



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 96/413 (23%), Positives = 163/413 (39%), Gaps = 94/413 (22%)

Query: 101 LQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
           L P  F+F S  +     GA    K +H   V        V+   L          +NA 
Sbjct: 29  LSPQTFIFHSSARLLPEAGACAAKKAIHRQSVRGCVPSSSVIARGL----------HNAH 78

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            VFD    ++  +WT+++S  AR GR  D M                             
Sbjct: 79  RVFDGTPTRSLPAWTSIISGCAREGRHADGMR---------------------------- 110

Query: 221 AFYSFIEMRRE-GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
              +F EM  E G    +  VL+ ++  CA    +E G++IHG ++  G    + + NA+
Sbjct: 111 ---AFAEMLDECGATAPNAFVLAGVLRCCAGLGDVESGRRIHGWILRSGVCPDVVLCNAV 167

Query: 280 VDMYAKCSDIIAAKDIFGRMRRK-------------------------------DVVSWT 308
           +DMYAKC D   A+  FG M +K                               DV SW 
Sbjct: 168 LDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWN 227

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK---GRKLFKSM 365
           +I+ G  +HG   E L    +MV AGV  +  T+  +++A +  GL+     GR+L   +
Sbjct: 228 TIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTY-SMVFALA--GLLSSRDLGRQLHGRV 284

Query: 366 I-----EDYGITPSLQHYTCLLDLLSRSGHLDEAENLI-KAMPFEPDEP-TWAALLSACK 418
           +     ED  +  S      L+D+  + G ++ A ++  +   F  D    W+ +++   
Sbjct: 285 VVAVLEEDAFVGCS------LMDMYCKCGEMESALSIFDRWSDFTEDRQFAWSTMVAGYV 338

Query: 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVME 471
            +   E        +  L+   P+   +L++V ++ A    V + R++   +E
Sbjct: 339 QNGREEEALEFFRRM--LREGVPAGQFILTSVASACANAGMVEQGRQVHGFVE 389


>gi|242062682|ref|XP_002452630.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
 gi|241932461|gb|EES05606.1| hypothetical protein SORBIDRAFT_04g029423 [Sorghum bicolor]
          Length = 605

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/569 (35%), Positives = 308/569 (54%), Gaps = 39/569 (6%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NTL+  +  C  +  A  +   MP RD  SW ++++  ++    ++  ++F  M A + +
Sbjct: 76  NTLLSCHFACGDIDGAWRVFSTMPVRDVTSWNTMVSGLSKNGAIEEAEAMFRAMPARNAV 135

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
             +  V A                                 ++S  DM A   L  NA  
Sbjct: 136 SWNAMVAA---------------------------------RASSGDMGAAENLFRNAPE 162

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
             D+I       WTAM+S Y  +G  + AME F   PVRNL  W A+V+G V++    DA
Sbjct: 163 KTDAIL------WTAMVSGYMDTGNVQKAMEYFRAMPVRNLVSWNAVVAGYVKNSRAGDA 216

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  M  + +   +P  LSS++  C+N + L  G+Q+H   + L     + +  +++ 
Sbjct: 217 LRVFKTMVEDAIVQPNPSTLSSVLLGCSNLSALGFGRQVHQWCMKLPLGRSITVGTSLLS 276

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC D+  A  +F  M  KD+V+W ++I G AQHG   + + L+++M   GV P+ +T
Sbjct: 277 MYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQHGGGRKAIKLFEKMKDEGVVPDWIT 336

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
            + ++ AC H GL   G + F++M E Y I P + HY+C++DLL R+G L+ A N+I +M
Sbjct: 337 LLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVDHYSCMVDLLCRAGLLERAVNMIHSM 396

Query: 402 PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVS 461
           PFEP    +  LL+AC+ ++N E     A  L+   P++  +Y+ L+N+YA A  W  VS
Sbjct: 397 PFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANRWDDVS 456

Query: 462 KVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVP 521
           +VR+ M    V K PGYS++E     H F + +  HP  D I + L  L   MK  GY P
Sbjct: 457 RVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLDLIHDKLDRLGKLMKAMGYSP 516

Query: 522 DTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMIS 581
           D    LHD+E+  K + L  HSE+LA+A+GL+ + PG  LR+ KNLR+CGDCH   K+IS
Sbjct: 517 DLDFALHDVEESLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAAKLIS 576

Query: 582 RITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +I  REI++RD TR+HHF+ G CSC D+W
Sbjct: 577 KIEDREIILRDTTRFHHFRGGHCSCGDYW 605



 Score = 48.1 bits (113), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 37/151 (24%), Positives = 68/151 (45%), Gaps = 8/151 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H   +KL L +   +  +L+  Y KC  +  A  L +EM  +D V+W ++++ Y Q 
Sbjct: 253 RQVHQWCMKLPLGRSITVGTSLLSMYCKCGDLDDACKLFDEMHTKDIVAWNAMISGYAQH 312

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ----VHACFVLSPFCD 138
              +K I +F  M   + + PD     +++ AC   G    G Q    +   + + P  D
Sbjct: 313 GGGRKAIKLFEKMKD-EGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYNIEPQVD 371

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
                S +VD+  + GL   A  +  S+  +
Sbjct: 372 H---YSCMVDLLCRAGLLERAVNMIHSMPFE 399


>gi|449479821|ref|XP_004155717.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 745

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/571 (35%), Positives = 318/571 (55%), Gaps = 53/571 (9%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           +   LID Y K   +  A  L + + +R  VSW  ++    ++    +    F+ ML  +
Sbjct: 228 MTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLE-E 286

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           KL P+     SL+  CG +G   LGK  HA  + + F     + ++L+DMY KCG    A
Sbjct: 287 KLFPNEITLLSLITECGFVGTLDLGKWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYA 346

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           RA+F+ +K K+   W+ ++SAYA                          VS + Q     
Sbjct: 347 RALFNGVKKKDVKIWSVLISAYAH-------------------------VSCMDQ----- 376

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
             F  F+EM    V   + + + S++  CA    L+LGK  H  +   G E  + +  A+
Sbjct: 377 -VFNLFVEMLNNDVK-PNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVILETAL 434

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           ++MYAKC D+  A+ +F    ++D+  W +++ G + HG  +E L L+ EM S GV+PN+
Sbjct: 435 INMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSEMESHGVEPND 494

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           +TFV + +ACSH GL                    ++HY CL+DLL R+GHLDEA N+I+
Sbjct: 495 ITFVSIFHACSHSGL--------------------MEHYGCLVDLLGRAGHLDEAHNIIE 534

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
            MP  P+   W ALL+ACK H+N  +G   A  +L L P++    +L SN+YASA  W  
Sbjct: 535 NMPMRPNTIIWGALLAACKLHKNLALGEVAARKILELDPQNCGYSVLKSNIYASAKRWND 594

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
           V+ VR+ MS   +KKEPG S+IE     H F +G+ +     +++E++TE+  +++  GY
Sbjct: 595 VTSVREAMSHSGMKKEPGLSWIEVSGSVHHFKSGDKACTQTTKVYEMVTEMCIKLRESGY 654

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
            P+T++VL +++++EKE  L +HSE+LA A+GL+ + PGT +R+VKNLR+C DCH   K+
Sbjct: 655 TPNTAAVLLNIDEEEKESALSYHSEKLATAFGLISTAPGTPIRIVKNLRICDDCHAATKL 714

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +S+I  R I+VRD  R+HHF +G CSC  +W
Sbjct: 715 LSKIYGRTIIVRDRNRFHHFSEGYCSCMGYW 745



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 190/393 (48%), Gaps = 42/393 (10%)

Query: 75  ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134
           ++++Y   +LPQ + + +  M + D    D+F+  SL+KAC    +  LG+++H     +
Sbjct: 58  LISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFAQKN 117

Query: 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
            F  D  V ++L++MY KCG   +AR VFD +  ++ VSWT ML  Y RS    +A+ + 
Sbjct: 118 GFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEALRL- 176

Query: 195 EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVL 254
               VR +                      F+ ++  GV ++      S++    N   +
Sbjct: 177 ----VREM---------------------QFVGVKLSGVALI------SLIAVFGNLLDM 205

Query: 255 ELGKQIHGLVI-ALGYESC-LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
           + G+ +HG ++  +G E   + ++ A++DMY K   + +A+ +F R+ ++ VVSWT +I 
Sbjct: 206 KSGRAVHGYIVRNVGDEKMEVSMTTALIDMYCKGGCLASAQRLFDRLSKRSVVSWTVMIA 265

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G  +  + +E    ++ M+   + PNE+T + LI  C  VG +  G K F + +   G  
Sbjct: 266 GCIRSCRLDEGAKNFNRMLEEKLFPNEITLLSLITECGFVGTLDLG-KWFHAYLLRNGFG 324

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
            SL   T L+D+  + G +  A  L   +  + D   W+ L+SA  H    +    +   
Sbjct: 325 MSLALVTALIDMYGKCGQVGYARALFNGVK-KKDVKIWSVLISAYAHVSCMDQVFNLFVE 383

Query: 433 LLS--LKPEDPSSYILLSNVYASAAM----WQH 459
           +L+  +KP + +   LLS    + A+    W H
Sbjct: 384 MLNNDVKPNNVTMVSLLSLCAEAGALDLGKWTH 416



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/174 (30%), Positives = 92/174 (52%), Gaps = 1/174 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K  HA +++ G      L   LID YGKC  V YA  L   + ++D   W+ +++AY   
Sbjct: 312 KWFHAYLLRNGFGMSLALVTALIDMYGKCGQVGYARALFNGVKKKDVKIWSVLISAYAHV 371

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           +   +  ++F  ML  D ++P++    SL+  C   GA  LGK  HA         D ++
Sbjct: 372 SCMDQVFNLFVEMLNND-VKPNNVTMVSLLSLCAEAGALDLGKWTHAYINRHGLEVDVIL 430

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           +++L++MYAKCG    AR++F+    ++   W  M++ ++  G  K+A+E+F +
Sbjct: 431 ETALINMYAKCGDVTIARSLFNEAMQRDIRMWNTMMAGFSMHGCGKEALELFSE 484



 Score = 98.6 bits (244), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 120/245 (48%), Gaps = 3/245 (1%)

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           +  L+S    +     +F  ++ MR      +D  +L S++ ACA  +  +LG+++HG  
Sbjct: 55  YNLLISSYTNNHLPQASFNCYLHMRSNDAAALDNFILPSLLKACAQASSGDLGRELHGFA 114

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
              G+ S +F+ NA+++MY KC  +++A+ +F +M  +DVVSWT+++    +     E L
Sbjct: 115 QKNGFASDVFVCNALMNMYEKCGCLVSARLVFDQMPERDVVSWTTMLGCYVRSKAFGEAL 174

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP-SLQHYTCLLD 383
            L  EM   GVK + V  + LI    ++  +  GR +   ++ + G     +   T L+D
Sbjct: 175 RLVREMQFVGVKLSGVALISLIAVFGNLLDMKSGRAVHGYIVRNVGDEKMEVSMTTALID 234

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           +  + G L  A+ L   +  +    +W  +++ C      + G +  N +L  K   P+ 
Sbjct: 235 MYCKGGCLASAQRLFDRLS-KRSVVSWTVMIAGCIRSCRLDEGAKNFNRMLEEKLF-PNE 292

Query: 444 YILLS 448
             LLS
Sbjct: 293 ITLLS 297



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 21/172 (12%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L +CA        K  HA I + GL     L   LI+ Y KC  V  A  L  E  QRD 
Sbjct: 400 LSLCAEAGALDLGKWTHAYINRHGLEVDVILETALINMYAKCGDVTIARSLFNEAMQRDI 459

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
             W +++  ++     ++ + +FS M +   ++P+   F S+  AC   G      + + 
Sbjct: 460 RMWNTMMAGFSMHGCGKEALELFSEMES-HGVEPNDITFVSIFHACSHSGLM----EHYG 514

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
           C               LVD+  + G  + A  + +++ ++ N++ W A+L+A
Sbjct: 515 C---------------LVDLLGRAGHLDEAHNIIENMPMRPNTIIWGALLAA 551


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 217/631 (34%), Positives = 343/631 (54%), Gaps = 46/631 (7%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L+ C+        K +HA +++ G+     L N+++D Y KC + +YA  L E M + D 
Sbjct: 397  LKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDV 456

Query: 70   VSWASILTAYNQAN-----------LPQKTISIFSTML-----------ALDKL------ 101
            VSW  ++ AY +A            LP K +  ++T++           AL++L      
Sbjct: 457  VSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVEC 516

Query: 102  --QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
              +     F+  +    SL    LG+Q+H   +   F  D  ++SSLV+MY KCG  + A
Sbjct: 517  GTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCGRMDKA 576

Query: 160  RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
              +   + L                 RK +A   +++ P   +  W ++VSG V +    
Sbjct: 577  SIILRDVPLDVL--------------RKGNARVSYKE-PKAGIVSWGSMVSGYVWNGKYE 621

Query: 220  DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
            D   +F  M RE V +VD   +++I+ ACAN  +LE G+ +H  V  +G+    ++ +++
Sbjct: 622  DGLKTFRLMVRELV-VVDIRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSL 680

Query: 280  VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
            +DMY+K   +  A  +F +    ++V WTS+I G A HGQ    + L++EM++ G+ PNE
Sbjct: 681  IDMYSKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNE 740

Query: 340  VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
            VTF+G++ ACSH GL+ +G + F+ M + Y I P ++H T ++DL  R+GHL + +N I 
Sbjct: 741  VTFLGVLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIF 800

Query: 400  AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
                      W + LS+C+ H+N EMG  V+  LL + P DP +Y+LLSN+ AS   W  
Sbjct: 801  KNGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDE 860

Query: 460  VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
             ++VR LM    VKK+PG S+I+     H F  G+ SHP  DEI+  L  L   +K  GY
Sbjct: 861  AARVRSLMHQRGVKKQPGQSWIQLKDQIHTFVMGDRSHPQDDEIYSYLDILIGRLKEIGY 920

Query: 520  VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
              D   V+ D+E+++ E  +  HSE+LAV +G++ +   T +R++KNLR+C DCH  +K 
Sbjct: 921  SFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDCHNFIKY 980

Query: 580  ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             S++  REI+VRD  R+HHFK G CSC D+W
Sbjct: 981  ASQLLDREIIVRDIHRFHHFKHGSCSCGDYW 1011



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 225/449 (50%), Gaps = 38/449 (8%)

Query: 1   MQISHYLHR---LRVCARHQIALT-----VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCD 52
             IS Y +    L+ C+ +   L+     + TLHA  +K G  Q     N L+  Y K +
Sbjct: 279 FSISSYFYPPLWLQSCSLYHFTLSNSPPPLGTLHALYVKNGSLQTLNPANHLLTLYAKSN 338

Query: 53  LVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLV 112
            + +A  L +E+PQR+  +W  +++ + +A   +   ++F  M A     P+ +  +S++
Sbjct: 339 NMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGAC-PNQYTLSSVL 397

Query: 113 KACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSV 172
           K C      +LGK VHA  + +    D V+ +S++D+Y KC +   A  +F+ +   + V
Sbjct: 398 KCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAERLFELMNEGDVV 457

Query: 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ---SRNEIDAFYSFIEMR 229
           SW  M+ AY R+G  + ++++F + P +++  W  +V GL+Q    R+ ++  Y  +E  
Sbjct: 458 SWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYCMVECG 517

Query: 230 RE--GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
            E   V     L+L+S      + + +ELG+Q+HG+V+  G++S  FI +++V+MY KC 
Sbjct: 518 TEFSAVTFSIALILAS------SLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCG 571

Query: 288 DIIAAKDIF----------GRMR------RKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
            +  A  I           G  R      +  +VSW S++ G   +G+ E+ L  +  MV
Sbjct: 572 RMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMV 631

Query: 332 SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
              V  +  T   +I AC++ G++  GR +  + ++  G        + L+D+ S+SG L
Sbjct: 632 RELVVVDIRTVTTIISACANAGILEFGRHV-HAYVQKIGHRIDAYVGSSLIDMYSKSGSL 690

Query: 392 DEAENLIKAMPFEPDEPTWAALLSACKHH 420
           D+A  + +    EP+   W +++S    H
Sbjct: 691 DDAWMVFRQSN-EPNIVMWTSMISGYALH 718


>gi|147864534|emb|CAN78385.1| hypothetical protein VITISV_017238 [Vitis vinifera]
          Length = 643

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/598 (35%), Positives = 317/598 (53%), Gaps = 42/598 (7%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   ++ C    +      +H  ++K G      + N+LI  Y     +  A  L     
Sbjct: 3   YPFVIKACNESSVTWFGLLVHTHVVKSGFECDSYIVNSLIHLYANGKDLGAAKQLFSLCS 62

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            RD VSW +++  Y +      T  +F  M+                             
Sbjct: 63  DRDVVSWNAMIDGYVKRGEMGHTRMVFDRMV----------------------------- 93

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
                      C D +  +++++ YA  G  + A+ +FD +  +N VSW +MLS + + G
Sbjct: 94  -----------CRDVISWNTIINGYAIVGKIDEAKRLFDEMPERNLVSWNSMLSGFVKCG 142

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
             ++A  +F + P R++  W ++++   Q     +A   F +MR  GV   +  V+S ++
Sbjct: 143 NVEEAFGLFSEMPCRDVVSWNSMLACYAQCGKPNEALALFDQMRAVGVKPTEATVVS-LL 201

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            ACA+   L+ G  +H  +     E    +  A+VDMYAKC  I  A  +F  M  KDV+
Sbjct: 202 SACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVFNAMESKDVL 261

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +W +II G A HG  +E   L+ EM  A V+PN++TFV ++ ACSH G+V +G+KL   M
Sbjct: 262 AWNTIIAGMAIHGHVKEAQQLFKEMKEASVEPNDITFVAMLSACSHAGMVDEGQKLLDCM 321

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
              YGI P ++HY C++DLL+R+G L+EA  LI  MP EP+     ALL  C+ H N E+
Sbjct: 322 SSSYGIEPKVEHYDCVIDLLARAGLLEEAMELIGTMPMEPNPSALGALLGGCRIHGNFEL 381

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G  V   L++L+P     YILLSN+YA+A  W    KVR LM V  + K PG S IE   
Sbjct: 382 GEMVGKRLINLQPCHSGRYILLSNIYAAAKKWDDARKVRNLMKVNGISKVPGVSVIELKG 441

Query: 486 GSHIFYAGETSHPLKDEIFELLTELDAEMKRR-GYVPDTSSVLHDMEQKEKERQLFWHSE 544
             H F AG+ SHP  ++I++ L E+   +K   GY  DT +VL DME+++KE  L  HSE
Sbjct: 442 MVHRFVAGDWSHPESNKIYDKLNEIHTRLKSAIGYSADTGNVLLDMEEEDKEHALAVHSE 501

Query: 545 RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
           +LA+AYGLL       +R+VKNLRVC DCH V K+IS++  REI+VRD  R+HHF+DG
Sbjct: 502 KLAIAYGLLHLDSKEAIRIVKNLRVCRDCHHVTKLISKVYGREIIVRDRNRFHHFEDG 559


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/595 (35%), Positives = 336/595 (56%), Gaps = 44/595 (7%)

Query: 23   KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN-- 80
            + +H +  K GL     + N L+  Y + D +     +  +MP+ D VSW S + A    
Sbjct: 577  RQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKY 636

Query: 81   QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
            +A++ Q        M A    +P+   F +++ A  S     LG Q+HA  +     DD+
Sbjct: 637  EASVLQALKYFLEMMQA--GWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDN 694

Query: 141  VVKSSLVDMYAKCGLPNNARAVFDSI-KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             ++++L+  Y KC    +   +F  + + ++ VSW +M+S Y  SG    AM+       
Sbjct: 695  AIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMD------- 747

Query: 200  RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                    LV  ++Q   ++D F                   ++++ ACA+ A LE G +
Sbjct: 748  --------LVWPMMQRGQKLDGF-----------------TFATVLSACASVATLERGME 782

Query: 260  IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
            +H   +    ES + + +A+VDMYAKC  I  A   F  M  +++ SW S+I G A+HG 
Sbjct: 783  VHACAVRACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGH 842

Query: 320  AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
             ++ L ++  M   G  P+ VTFVG++ ACSHVGLV +G K FKSM E YG++P ++H++
Sbjct: 843  GQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFS 902

Query: 380  CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC--KHHRNTEMGTRVANHLLSLK 437
            C++DLL R+G + + E+ IK MP +P+   W  +L AC   + RNTE+G R A  L+ L+
Sbjct: 903  CMVDLLGRAGDVKKIEDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELE 962

Query: 438  PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
            P++  +Y+LLSN++A+   W+ V + R  M    VKK+ G S++    G H+F AG+ +H
Sbjct: 963  PQNAVNYVLLSNMHAAGGNWEDVVEARLAMRKAAVKKDAGCSWVNMKDGVHLFVAGDQTH 1022

Query: 498  PLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLK--S 555
            P K++I+E L EL  +++  GYVP+T   L+D+E + KE  L +HSE+LA+A+ L +   
Sbjct: 1023 PEKEKIYEKLKELMNKIRDAGYVPETKYALYDLELENKEELLSYHSEKLAIAFVLTRKSE 1082

Query: 556  VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +P   +R++KNLRVCGDCH   K IS+I  R+I++RD+ R+HHF  G CSC D+W
Sbjct: 1083 LP---IRIMKNLRVCGDCHTAFKYISKIVGRQIILRDSNRFHHFGGGMCSCGDYW 1134



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 215/448 (47%), Gaps = 55/448 (12%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LH Q+ K G        NTLI+ Y +   +  A  L +EMPQ++ VSW+ +++ Y Q  +
Sbjct: 162 LHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRM 221

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT--RLGKQVHACFVLSPFCDDDVV 142
           P +  S+F  +++   L P+HF   S ++AC   G+T  +LG Q+HA     P   D ++
Sbjct: 222 PDEACSLFKGVIS-SGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMIL 280

Query: 143 KSSLVDMYAKC-GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
            + L+ MY+ C G  ++A  VFD IK +NSV+W +++S Y R G                
Sbjct: 281 SNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRG---------------- 324

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI---VDPLVLSSIVGACANFA--VLEL 256
                          + + AF  F  M+ EGV++    +   L S+V A  + A   L L
Sbjct: 325 ---------------DAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVL 369

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
            +Q+   +   G+   L++ +A+V+ +A+   +  AK IF +M  ++ V+   ++VG A+
Sbjct: 370 LEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLAR 429

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK--------LFKSMIED 368
             Q EE   ++ EM    V+ N  + V L+   +    + +G++        LF+S + D
Sbjct: 430 QHQGEEAAKVFKEMKDL-VEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVD 488

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
             I+        L+++  +   +D A ++ + MP   D  +W +++S   H+   E    
Sbjct: 489 ARISIG----NALVNMYGKCTAIDNACSVFQLMP-SKDTVSWNSMISGLDHNERFEEAVS 543

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAM 456
              H +      PS++ ++S + + +++
Sbjct: 544 CF-HTMKRNGMVPSNFSVISTLSSCSSL 570



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 192/410 (46%), Gaps = 37/410 (9%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCD-LVQYAHHLLEEMPQRDHVS 71
           C    I L ++ +HA I KL       L N L+  Y  C   +  AH + +E+  R+ V+
Sbjct: 254 CGSTGIKLGMQ-IHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVT 312

Query: 72  WASILTAYNQANLPQKTISIFSTMLALD---KLQPDHFVFASLVKACGSLG--ATRLGKQ 126
           W SI++ Y +         +FS M        L+P+ +   SLV A  SL      L +Q
Sbjct: 313 WNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQ 372

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +      S F  D  V S+LV+ +A+ GL + A+ +F  +  +N+V+   ++   AR  +
Sbjct: 373 MLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQ 432

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
            ++A ++F++  +++L    +    LV   +    F +  E +R+G ++   L  S +V 
Sbjct: 433 GEEAAKVFKE--MKDLVEINS--ESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVD 488

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           A                 I++G        NA+V+MY KC+ I  A  +F  M  KD VS
Sbjct: 489 A----------------RISIG--------NALVNMYGKCTAIDNACSVFQLMPSKDTVS 524

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W S+I G   + + EE ++ +  M   G+ P+  + +  + +CS +G +  GR++     
Sbjct: 525 WNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLGRQIHGEGF 584

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           + +G+   +     LL L + +  ++E + +   MP E D+ +W + + A
Sbjct: 585 K-WGLDLDVSVSNALLTLYAETDSINECQKVFFQMP-EYDQVSWNSFIGA 632



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 174/382 (45%), Gaps = 37/382 (9%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           + L++ + +  L+  A  + ++M  R+ V+   ++    + +  ++   +F  M  L ++
Sbjct: 390 SALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEI 449

Query: 102 QPDHFV--FASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNN 158
             +  V   ++  +        R G++VHA    S   D  + + ++LV+MY KC   +N
Sbjct: 450 NSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDN 509

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A +VF                               +  P ++   W +++SGL  +   
Sbjct: 510 ACSVF-------------------------------QLMPSKDTVSWNSMISGLDHNERF 538

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            +A   F  M+R G+   +  V+S++  +C++   L LG+QIHG     G +  + +SNA
Sbjct: 539 EEAVSCFHTMKRNGMVPSNFSVISTL-SSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSNA 597

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH-GQAEETLALYDEMVSAGVKP 337
           ++ +YA+   I   + +F +M   D VSW S I   A++     + L  + EM+ AG +P
Sbjct: 598 LLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRP 657

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           N VTF+ ++ A S   ++G G ++  ++I  Y +         LL    +   +++ E +
Sbjct: 658 NRVTFINILAAVSSFSVLGLGHQI-HALILKYSVADDNAIENALLAFYGKCEQMEDCEII 716

Query: 398 IKAMPFEPDEPTWAALLSACKH 419
              M    DE +W +++S   H
Sbjct: 717 FSRMSERRDEVSWNSMISGYLH 738



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 163/388 (42%), Gaps = 40/388 (10%)

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
             +++ Y R G    A ++F++ P +NL  W+ L+SG  Q+R   +A   F  +   G+ 
Sbjct: 179 NTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGL- 237

Query: 235 IVDPLVLSSIVGACANFAV--LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII-A 291
           + +   + S + AC       ++LG QIH  +  L   S + +SN ++ MY+ CS  I  
Sbjct: 238 LPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDD 297

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV----KPNEVTFVGLIY 347
           A  +F  ++ ++ V+W SII    + G A     L+  M   GV    +PNE T   L+ 
Sbjct: 298 AHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVT 357

Query: 348 -ACSHVGLVGKGRKLFKSM---IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
            ACS   L   G  L + M   IE  G    L   + L++  +R G +D A+ + K M +
Sbjct: 358 AACS---LADCGLVLLEQMLTRIEKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQM-Y 413

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL-------SNVYASAAM 456
           + +  T   L+         E   +V   +  L   +  S ++L       SN+      
Sbjct: 414 DRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLSTFTEFSNLKEGKRK 473

Query: 457 WQHVSKVRKLMSVMEVKKEPGYSYIE-FGKGSHIFYAGETSH--PLKD------------ 501
            Q V        +++ +   G + +  +GK + I  A       P KD            
Sbjct: 474 GQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLD 533

Query: 502 --EIFELLTELDAEMKRRGYVPDTSSVL 527
             E FE        MKR G VP   SV+
Sbjct: 534 HNERFEEAVSCFHTMKRNGMVPSNFSVI 561


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/600 (36%), Positives = 328/600 (54%), Gaps = 46/600 (7%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHV-SWASILTAYNQAN 83
           +H   ++ G  ++  + ++L+  Y K   +  A  + +       + +W ++++ Y  A 
Sbjct: 128 IHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAG 187

Query: 84  LPQKTISIFSTMLALD-KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF--CDDD 140
             +  + +F  M   + + QPD F FASL+KAC  LGATR G QVHA    S F    + 
Sbjct: 188 HGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNA 247

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           ++  +LVDMY KC                                R   AM++FE+   +
Sbjct: 248 ILAGALVDMYVKCR-------------------------------RLPVAMQVFERLERK 276

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           N+  WTA+V G  Q     +A   F    R G    D  VLSS+VG  A+FA++E G+Q+
Sbjct: 277 NVIQWTAVVVGHAQEGQVTEALELFRRFWRSGAR-PDSHVLSSVVGVLADFALVEQGRQV 335

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H   I     + +   N+IVDMY KC     A+ +F  MR  +VVSWT+++ G  +HG  
Sbjct: 336 HCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLG 395

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
            E +AL++EM + GV+P+EVT++ L+ ACSH GLV + R+ F  +  D  + P  +HY C
Sbjct: 396 REAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYAC 455

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DLL R+G L EA +LI+ MP EP    W  LLSAC+ H++  +G    + LL++  ++
Sbjct: 456 MVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDN 515

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAG---ETSH 497
           P +Y+ LSNV A A  W+   KVR  M    +KK+ G S++E GK  H FY G   E +H
Sbjct: 516 PVNYVTLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKEVHFFYGGGGEEETH 575

Query: 498 PLKDEIFELLTELDAEMKRR-GYVPDTSS-VLHDMEQKEKERQLFWHSERLAVAYGLLKS 555
           P   +I  +L +++  M+ + GY  D +   LHD++++ +   L  HSERLAV   LL++
Sbjct: 576 PQAGDIRRVLRDMETRMREQLGYNADDARFALHDVDEESRAESLRAHSERLAVGLWLLRN 635

Query: 556 VP-----GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
                  G  +RV KNLRVCGDCH   K +S + +R +VVRDA R+H F+ G CSC D+W
Sbjct: 636 GVDGGGHGEPIRVYKNLRVCGDCHEFFKGLSAVVRRALVVRDANRFHRFEHGSCSCKDYW 695



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 149/347 (42%), Gaps = 64/347 (18%)

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
           +++ ++ A A  + L  G Q+HG +  +G+ S   + N ++DMY KC ++  A ++FG M
Sbjct: 6   MIAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGM 65

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYAC--------- 349
           R ++VVSWT+++VG  +HG A   L L  EM +A    PNE T    + AC         
Sbjct: 66  RDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAG 125

Query: 350 --------------------------SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
                                     S  G +G  R++F    +  G+   +  +  ++ 
Sbjct: 126 VGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVF----DGAGLGSGIATWNAMVS 181

Query: 384 LLSRSGHLDEAENLIKAM-----PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
             + +GH  +A  + + M       +PDE T+A+LL AC     T  G +V   + +   
Sbjct: 182 GYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTA--- 238

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
              S +   SN   + A+     K R+L   M+V     +  +E  K    + A    H 
Sbjct: 239 ---SGFSTASNAILAGALVDMYVKCRRLPVAMQV-----FERLER-KNVIQWTAVVVGHA 289

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTS------SVLHDMEQKEKERQL 539
            + ++ E L EL     R G  PD+        VL D    E+ RQ+
Sbjct: 290 QEGQVTEAL-ELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQV 335



 Score = 88.6 bits (218), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 66/262 (25%), Positives = 113/262 (43%), Gaps = 34/262 (12%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
           + A L++A     + R G Q+H       F  D ++ ++L+DMY KCG           +
Sbjct: 6   MIAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCG----------EL 55

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
            L                     A E+F     RN+  WTAL+ G ++  +         
Sbjct: 56  DL---------------------ACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLG 94

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           EMR       +   LS+ + AC        G  IHGL +  GY+    +++++V +Y+K 
Sbjct: 95  EMRTASEAAPNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKG 154

Query: 287 SDIIAAKDIF-GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV--SAGVKPNEVTFV 343
             I  A+ +F G      + +W +++ G A  G   + L ++ EM       +P+E TF 
Sbjct: 155 GRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFA 214

Query: 344 GLIYACSHVGLVGKGRKLFKSM 365
            L+ ACS +G   +G ++  +M
Sbjct: 215 SLLKACSGLGATREGAQVHAAM 236


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/605 (33%), Positives = 336/605 (55%), Gaps = 35/605 (5%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L+ +    R    L  K +HA  I+ GL     + NTL+D Y KC  V+Y  H  E M +
Sbjct: 353 LNLIAASGRSGNLLKGKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHE 412

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           +D +SW +I+  Y Q     + I++F   + +  +  D  +  S+++AC  L +    ++
Sbjct: 413 KDLISWTTIIAGYAQNEFHLEAINLFRK-VQVKGMDVDPMMIGSVLRACSGLKSRNFIRE 471

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +H  +V      D ++++++V++Y + G  + AR  F+SI+ K+ VS             
Sbjct: 472 IHG-YVFKRDLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVS------------- 517

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
                             WT++++  V +   ++A   F  +++  +   D + + S + 
Sbjct: 518 ------------------WTSMITCCVHNGLPVEALELFYSLKQTNIQ-PDSIAIISALS 558

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           A AN + L+ GK+IHG +I  G+     I++++VDMYA C  +  ++ +F  ++++D++ 
Sbjct: 559 ATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLIL 618

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           WTS+I     HG   + +AL+ +M    V P+ +TF+ L+YACSH GL+ +G++ F+ M 
Sbjct: 619 WTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACSHSGLMVEGKRFFEIMK 678

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             Y + P  +HY C++DLLSRS  L+EA + ++ MP +P    W ALL AC  H N E+G
Sbjct: 679 YGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPSSEIWCALLGACHIHSNKELG 738

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
              A  LL    E+   Y L+SN++A+   W  V +VR  M    +KK PG S+IE    
Sbjct: 739 ELAAKELLQSDTENSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNK 798

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRR-GYVPDTSSVLHDMEQKEKERQLFWHSER 545
            H F A + SHP  D+I+  L +    ++++ GY+  T  V H++ ++EK + L+ HSER
Sbjct: 799 IHTFMARDKSHPQTDDIYLKLAQFTKLLEKKGGYIAQTKFVFHNVSEEEKTQMLYGHSER 858

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+ YGLL +  GT +R+ KNLR+C DCH   K+ S +++R +VVRDA R+HHF+ G CS
Sbjct: 859 LALGYGLLVTPKGTCIRITKNLRICDDCHTFFKIASEVSQRPLVVRDANRFHHFERGLCS 918

Query: 606 CNDFW 610
           C DFW
Sbjct: 919 CGDFW 923



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 204/409 (49%), Gaps = 39/409 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L +C   +     + LHA ++K  L  +  L   L+  YGKC  ++ A  + +EM +R  
Sbjct: 53  LDLCVAAKALPQGQQLHALLLKSHLSAF--LATKLVLMYGKCGSLRDAVKVFDEMSERTI 110

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW +++ A+  +    + I ++  M  L  +  D   F S++KACG+LG +RLG ++H 
Sbjct: 111 FSWNALMGAFVSSGKYLEAIELYKDMRVLG-VAIDACTFPSVLKACGALGESRLGAEIHG 169

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL--KNSVSWTAMLSAYARSGRK 187
             V   + +   V ++L+ MY KCG    AR +FD I +  +++VSW +++SA+   G  
Sbjct: 170 VAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNC 229

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
            +A+ +F +                +Q        Y+F+    +GV+  DP         
Sbjct: 230 LEALSLFRR----------------MQEVGVASNTYTFVAA-LQGVE--DP--------- 261

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
               + ++LG  IHG V+   + + ++++NA++ MYAKC  +  A  +F  M  +D VSW
Sbjct: 262 ----SFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSW 317

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            +++ G  Q+    + L  + +M ++G KP++V+ + LI A    G + KG+++    I 
Sbjct: 318 NTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIR 377

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           + G+  ++Q    L+D+ ++   +    +  + M  E D  +W  +++ 
Sbjct: 378 N-GLDSNMQIGNTLVDMYAKCCCVKYMGHAFECM-HEKDLISWTTIIAG 424



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 114/439 (25%), Positives = 194/439 (44%), Gaps = 49/439 (11%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE--MPQRDHVSWASILTAYNQA 82
           +H   +K G  ++  + N LI  YGKC  +  A  L +   M + D VSW SI++A+   
Sbjct: 167 IHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAE 226

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + +S+F  M  +  +  + + F + ++        +LG  +H   + S    D  V
Sbjct: 227 GNCLEALSLFRRMQEVG-VASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYV 285

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+ MYAKC                               GR +DA  +FE    R+ 
Sbjct: 286 ANALIAMYAKC-------------------------------GRMEDAGRVFESMLCRDY 314

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W  L+SGLVQ+    DA   F +M+  G    D + + +++ A      L  GK++H 
Sbjct: 315 VSWNTLLSGLVQNELYSDALNYFRDMQNSGQK-PDQVSVLNLIAASGRSGNLLKGKEVHA 373

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             I  G +S + I N +VDMYAKC  +      F  M  KD++SWT+II G AQ+    E
Sbjct: 374 YAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLE 433

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY---T 379
            + L+ ++   G+  + +    ++ ACS  GL  K R   +  I  Y     L       
Sbjct: 434 AINLFRKVQVKGMDVDPMMIGSVLRACS--GL--KSRNFIRE-IHGYVFKRDLADIMLQN 488

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
            ++++    GH+D A    +++    D  +W ++++ C H+    +         SLK  
Sbjct: 489 AIVNVYGEVGHIDYARRAFESIR-SKDIVSWTSMITCCVHN---GLPVEALELFYSLKQT 544

Query: 440 D--PSSYILLSNVYASAAM 456
           +  P S  ++S + A+A +
Sbjct: 545 NIQPDSIAIISALSATANL 563


>gi|414876354|tpg|DAA53485.1| TPA: hypothetical protein ZEAMMB73_494075 [Zea mays]
          Length = 830

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/578 (36%), Positives = 331/578 (57%), Gaps = 40/578 (6%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   LI+AY     +  A  + +E P ++   W ++L A   A+  ++ ++  + M  L 
Sbjct: 286 LSTRLIEAYAALSALPAARQVFDEAPVKNIFVWNAMLKALALADHGEEALTCLADMGRLG 345

Query: 100 KLQPDHFVFASLVKACGSLGATRLG-----KQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
            +  D + +A  +KAC +  A+ L      +++HA  +   +     V ++L+D YAK G
Sbjct: 346 -VPVDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLG 404

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
           + + A  VF S+                               P RNL  W+A++    +
Sbjct: 405 IVSYAERVFTSM-------------------------------PDRNLVSWSAMIGCYAK 433

Query: 215 SRNEIDAFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
           +    DA   F EM     D+V + + + S++ ACA    L  GK +H  ++  G++  +
Sbjct: 434 NERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVNALGQGKVLHAYILRRGFDLLV 493

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
            + NA++ MY KC  +   + IF  + RR++VVSW S+I G   HG   E+L +++EM+ 
Sbjct: 494 SVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLISGYGMHGFGRESLQVFEEMIE 553

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
            G+ PN +TFV ++ ACSHVGLV +G+KLF+SM+E Y +TP  +HY C++DLL R+G LD
Sbjct: 554 EGISPNIITFVSVLGACSHVGLVEQGKKLFESMVE-YNVTPRAEHYACMVDLLGRAGRLD 612

Query: 393 EAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           EA  LI++M  +P    W +LL AC+ H + E      +HL  L+P +  +Y+LL+++YA
Sbjct: 613 EAVELIQSMRIQPSPQVWGSLLGACRIHGHVEYAEMACSHLFDLEPRNAGNYVLLADIYA 672

Query: 453 SAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDA 512
            A +   V  +++L+    ++K PG S+IE  K  + F + +  +P  +E+  L+ E   
Sbjct: 673 RAKLQNQVDVLKELLEEHALEKVPGCSWIEVKKKLYSFVSVDNKNPQVEELQALIGEFVT 732

Query: 513 EMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGD 572
           +MK  GYVPDT SVL+D+E++EKER L  HSE+LAVA+GL+K+  G  +R+ KNLR+C D
Sbjct: 733 QMKNEGYVPDTRSVLYDIEEEEKERILLGHSEKLAVAFGLIKTGSGEAIRITKNLRLCED 792

Query: 573 CHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           CH V K IS+ T REIVVRD  R+HHF++G CSC D+W
Sbjct: 793 CHSVTKFISKFTDREIVVRDVNRFHHFRNGVCSCRDYW 830



 Score =  115 bits (289), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 148/333 (44%), Gaps = 45/333 (13%)

Query: 6   YLHRLRVC----ARHQIA-LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           Y H L+ C    A H  A   V+ +HA  I+ G   +  +  TLID Y K  +V YA  +
Sbjct: 353 YAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVATTLIDCYAKLGIVSYAERV 412

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDK-LQPDHFVFASLVKACGSLG 119
              MP R+ VSW++++  Y +   P   I IF  M+A D  L P+     S++ AC  + 
Sbjct: 413 FTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDADLVPNSITIVSVLHACAGVN 472

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI-KLKNSVSWTAML 178
           A   GK +HA  +   F     V ++L+ MY KCG     R +F+ I + +N VSW +++
Sbjct: 473 ALGQGKVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETGRYIFNWIGRRRNVVSWNSLI 532

Query: 179 SAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238
           S Y   G  ++++++FE                               EM  EG+   + 
Sbjct: 533 SGYGMHGFGRESLQVFE-------------------------------EMIEEGIS-PNI 560

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
           +   S++GAC++  ++E GK++   ++             +VD+  +   +  A ++   
Sbjct: 561 ITFVSVLGACSHVGLVEQGKKLFESMVEYNVTPRAEHYACMVDLLGRAGRLDEAVELIQS 620

Query: 299 MR-RKDVVSWTSIIVGTAQHGQAEETLALYDEM 330
           MR +     W S++     HG  E     Y EM
Sbjct: 621 MRIQPSPQVWGSLLGACRIHGHVE-----YAEM 648



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/326 (23%), Positives = 136/326 (41%), Gaps = 41/326 (12%)

Query: 103 PDHFVFASLVKACGSLGATRLGKQVHACFVLSP-FCDDDVVKSSLVDMYAKCGLPNNARA 161
           P    + SL+ A      T L   VH      P F  D  + + L++ YA       AR 
Sbjct: 246 PTQRTYESLLLAAARARDTALAAAVHRRLEADPVFRSDPFLSTRLIEAYAALSALPAARQ 305

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VFD   +KN   W AML A A +   ++A+                              
Sbjct: 306 VFDEAPVKNIFVWNAMLKALALADHGEEALTCLA-------------------------- 339

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG-----KQIHGLVIALGYESCLFIS 276
                +M R GV  VD    +  + AC   +   L      +++H   I  GY     ++
Sbjct: 340 -----DMGRLGVP-VDSYSYAHGLKACIAASASHLPASARVREMHAHAIRRGYGLHTHVA 393

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS--AG 334
             ++D YAK   +  A+ +F  M  +++VSW+++I   A++ +  + + ++ EM++  A 
Sbjct: 394 TTLIDCYAKLGIVSYAERVFTSMPDRNLVSWSAMIGCYAKNERPGDAIQIFQEMMASDAD 453

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
           + PN +T V +++AC+ V  +G+G K+  + I   G    +     L+ +  + G L+  
Sbjct: 454 LVPNSITIVSVLHACAGVNALGQG-KVLHAYILRRGFDLLVSVLNALMAMYMKCGCLETG 512

Query: 395 ENLIKAMPFEPDEPTWAALLSACKHH 420
             +   +    +  +W +L+S    H
Sbjct: 513 RYIFNWIGRRRNVVSWNSLISGYGMH 538


>gi|125553513|gb|EAY99222.1| hypothetical protein OsI_21180 [Oryza sativa Indica Group]
          Length = 818

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/599 (32%), Positives = 340/599 (56%), Gaps = 42/599 (7%)

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
           D ++ A  +    P+ +  +W ++L+  ++    ++ + + ++ML    L+PD    +SL
Sbjct: 222 DALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLK-QGLRPDATTVSSL 280

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           +K+  + G  R G ++H  F+ +    D    ++LVDMYAKCG  + A+ VFD+++ +N 
Sbjct: 281 LKSVANTGLLRHGMEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNL 340

Query: 172 VSWTAMLSAYARSGRKKDAMEIFE------------------------------------ 195
            +W ++++ YA +GR   A+E+ E                                    
Sbjct: 341 TTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQ 400

Query: 196 ---QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
                   N+  WT+L+SG   +    D+FY   EM+++GV     + +S ++ ACA  A
Sbjct: 401 IKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQ-PSLVTMSVLLRACAGLA 459

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
           + + GK++H   +   Y+  + +S A++DMY+K   +++AK IF  +++K++V   +++ 
Sbjct: 460 LQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAMLT 519

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G A HGQ  E + L+ +M ++G+KP+ +TF  L+ AC  +GLV +G + F  M   YG+ 
Sbjct: 520 GLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDGMETKYGVK 579

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
           P+ ++Y C++DLL+R G+LDEA + I+  P +P    W ALL+ C  H N  +    A +
Sbjct: 580 PTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAARN 639

Query: 433 LLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYA 492
           L  L+P + ++Y+L+ N+Y    M+     ++  M    V   PG+S+I+  +G H+F  
Sbjct: 640 LFRLEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFEV 699

Query: 493 GETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGL 552
               HP   EI+E L  L  ++K+ GYVPDTS + ++++++EKE+ L  H+E+LA+ YGL
Sbjct: 700 DGKPHPETAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYGL 759

Query: 553 LKSVPGTV-LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++S      +RV+KN R+C DCH V K IS +  R+I++RDA R+HHF DGKCSCND+W
Sbjct: 760 IRSDASRAPVRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 818



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 97/403 (24%), Positives = 175/403 (43%), Gaps = 31/403 (7%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQ 81
           LH+  ++ GL +   +   L+D   +         LL E  +   +D V W   +    +
Sbjct: 74  LHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAE 133

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
           A    + I++F  M A    +                   R G+ VHA  +        +
Sbjct: 134 AEEWDEAIAVFREMQARGVPR-------------------RRGRAVHAYALKLALDAHPL 174

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ----A 197
           V   L  MYA+      A  V D++   + V W A+++  AR G   DA+E+  +     
Sbjct: 175 VPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSG 234

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P  N+  W  ++SG  +   + +A      M ++G+   D   +SS++ + AN  +L  G
Sbjct: 235 PEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLR-PDATTVSSLLKSVANTGLLRHG 293

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
            +IH   +    E  ++   A+VDMYAKC  +  A+ +F  +  +++ +W S++ G A  
Sbjct: 294 MEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVFDALEHRNLTTWNSLVAGYANA 353

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G+ +  L L + M    + P+  T+ GLI   S  G   +   L +  I+  G+TP++  
Sbjct: 354 GRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQ-IKAAGVTPNVVS 412

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEP---TWAALLSAC 417
           +T L+     +G  +++      M  +  +P   T + LL AC
Sbjct: 413 WTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRAC 455



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 76/325 (23%), Positives = 150/325 (46%), Gaps = 36/325 (11%)

Query: 107 VFASLVKACGSLG--------ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL-PN 157
           V  SL++ C  L         A RL  Q+H+  V +    D  V  +LVD+ A+ G  P+
Sbjct: 46  VLVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALVDLLARLGRGPS 105

Query: 158 NARAVFDSIK--LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
            AR + ++ +   K++V W   ++  A +    +A+ +F +   R          G+ + 
Sbjct: 106 CARLLHEAAEDGAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQAR----------GVPRR 155

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI 275
           R      Y+     +  +D   PLV   + G  A  A +    ++   + A+G  S +  
Sbjct: 156 RGRAVHAYAL----KLALD-AHPLVPGFLAGMYAENADVAAATRV---LDAMGAGS-VVP 206

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRK----DVVSWTSIIVGTAQHGQAEETLALYDEMV 331
            NA+V   A+   +  A ++  RM R     +V +W +++ G ++HG+  E L +   M+
Sbjct: 207 WNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASML 266

Query: 332 SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
             G++P+  T   L+ + ++ GL+  G ++    + +  + P +   T L+D+ ++ G L
Sbjct: 267 KQGLRPDATTVSSLLKSVANTGLLRHGMEIHCFFLRNQ-LEPDVYTGTALVDMYAKCGRL 325

Query: 392 DEAENLIKAMPFEPDEPTWAALLSA 416
           D A+ +  A+    +  TW +L++ 
Sbjct: 326 DCAQKVFDALEHR-NLTTWNSLVAG 349



 Score = 47.4 bits (111), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 82/199 (41%), Gaps = 14/199 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR CA   +    K LH   ++        +   LID Y K   +  A  + E + Q++ 
Sbjct: 452 LRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNL 511

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ--- 126
           V   ++LT        ++ I +F  M     L+PD   F +L+ AC S+G    G +   
Sbjct: 512 VLCNAMLTGLAVHGQGREAIELFHDMWN-SGLKPDSITFTALLTACRSMGLVTEGWEYFD 570

Query: 127 -VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARS 184
            +   + + P  ++    + +VD+ A+CG  + A    +   +    S W A+L+  +  
Sbjct: 571 GMETKYGVKPTTEN---YACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIH 627

Query: 185 GRKKDAMEIFEQAPVRNLF 203
           G          +   RNLF
Sbjct: 628 GNLA-----LAEVAARNLF 641


>gi|302805448|ref|XP_002984475.1| hypothetical protein SELMODRAFT_180944 [Selaginella moellendorffii]
 gi|300147863|gb|EFJ14525.1| hypothetical protein SELMODRAFT_180944 [Selaginella moellendorffii]
          Length = 592

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 228/615 (37%), Positives = 346/615 (56%), Gaps = 45/615 (7%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
            Y   LR CAR ++    + +HA+II  G  +   L N L+  Y  C  ++ A  + + M
Sbjct: 14  EYATILRKCARSRLLEDGRRVHARIIHSGHTRDRFLGNLLVQMYRDCGRLEDARAVFDSM 73

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTML-ALDKLQPDHFVFASLVKACGSLGATRL 123
           P R+  SWA I++AY  A   Q+ + ++  ++ +  ++QPD F+F+S + AC  L     
Sbjct: 74  PLRNEFSWAIIISAYVGAGKEQEALCLYRALVRSSTEIQPDAFIFSSALAACARLKCLEQ 133

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSV--SWTAMLSAY 181
           G ++H   V      D  ++++LV MYAKCG  + A+ VFD I  ++ V  SW AM++ +
Sbjct: 134 GLEIHEQIVKRGIKQDVGLQNALVTMYAKCGRIDRAKQVFDRITHRDVVVISWNAMIAGF 193

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
            ++GR K A+E+F +  +           GL  SR                      +  
Sbjct: 194 GQNGRPKQALELFRRMDL----------EGLQPSR----------------------MTY 221

Query: 242 SSIVGACANFAVLELGKQI-HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
            S++ ACAN     LG+ I  G+  AL  +  + ++N+I +MY KC     A+  F  M 
Sbjct: 222 CSVLDACANLTASSLGRIICDGMDEALAKD--ISVANSICNMYGKCGLPELARQTFLEMT 279

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            +DVVSWT+II   AQ+G + E L ++  MV AGV+PN +T +  + ACSH  L  +G  
Sbjct: 280 YRDVVSWTAIIAAYAQNGYSSEALDIFRIMVQAGVEPNGITLINTLSACSHGALFDEGSD 339

Query: 361 LFKSMIED--YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
           +F S++    YG+T +  H+ C +DLL R+G+L +AE LI  MPF+     W +LLSAC+
Sbjct: 340 IFSSLVSGDYYGVTANESHFLCAIDLLGRAGYLKDAETLITKMPFKAGAVAWTSLLSACR 399

Query: 419 HHRNTEMGTRVANHLLSLKP---EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKE 475
             R+ +   RVANHL  L     +DP+ Y++LSN+YASA       K+R  + +   KK 
Sbjct: 400 TFRDLKRAGRVANHLFELDESSIKDPAPYVMLSNIYASAGDRAAEMKLRDQIRIKCRKKL 459

Query: 476 PGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEK 535
           PG S I     ++ FY+ + +HP +D+ +  L  L   MK  GYVPDT   + +ME++E 
Sbjct: 460 PGKSTITIKGQTNEFYSLDETHPRRDDAYNELRRLFQTMKEAGYVPDTR--IAEMEEEET 517

Query: 536 ERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATR 595
           E+ L +HSE+LA+A+G+L + P   L +VKNLRVC DCH V+K +S+   R+I VRDATR
Sbjct: 518 EQSLSYHSEKLALAFGVLNTPPEASLCIVKNLRVCSDCHNVIKFLSKHLNRKIAVRDATR 577

Query: 596 YHHFKDGKCSCNDFW 610
           +HHF++G CSC D W
Sbjct: 578 FHHFENGFCSCRDCW 592


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/636 (33%), Positives = 343/636 (53%), Gaps = 78/636 (12%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLH--------------QYGPLPNT------------ 43
           L+ CA+ +I    + +H  ++KLG                Q G L +             
Sbjct: 96  LKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDV 155

Query: 44  -----LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
                LI  Y     ++ A  L +E+P +D VSW ++++ Y +    ++ + +F  M+ +
Sbjct: 156 VSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMM 215

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
             ++PD     ++V AC    +  LG+ VH+      F  +  + ++L+D+Y+K G    
Sbjct: 216 TNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVET 275

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A  +FD +  K+ +SW  ++  Y      K+A+ +F+                       
Sbjct: 276 ACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQ----------------------- 312

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH--------GLVIALGYE 270
                   EM R G +  + + + SI+ ACA+   +++G+ IH        G+V  +   
Sbjct: 313 --------EMLRSG-ETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSS- 362

Query: 271 SCLFISNAIVDMYAKCSDIIAAKDIF-GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDE 329
               +  +++DMYAKC DI AA+ +F   M  + + +W ++I G A HG+A     ++  
Sbjct: 363 ----LQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSR 418

Query: 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389
           M   G++P+++TFVGL+ ACSH G++  GR +F+SM   Y ITP L+HY C++DLL  SG
Sbjct: 419 MRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSG 478

Query: 390 HLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSN 449
              EAE +I  MP EPD   W +LL ACK H N E+G   A  L+ ++P +  SY+LLSN
Sbjct: 479 LFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSN 538

Query: 450 VYASAAMWQHVSKVRKLMSVMEVKKE-PGYSYIEFGKGSHIFYAGETSHPLKDEIFELLT 508
           +YA+A  W  V+K+R L++   +KK+ PG S IE     H F  G+  HP   EI+ +L 
Sbjct: 539 IYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDSVVHEFIIGDKLHPQNREIYGMLE 598

Query: 509 ELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLR 568
           E++  ++  G+VPDTS VL +ME++ +E  L  HSE+LA+A+GL+ + PGT L ++KNLR
Sbjct: 599 EMEVLLEEAGFVPDTSEVLQEMEEEWREGALRHHSEKLAIAFGLISTKPGTKLTIMKNLR 658

Query: 569 VCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
           VC +CH   K+IS+I KREI+ RD TR+ HF+DG C
Sbjct: 659 VCKNCHEATKLISKIYKREIIARDRTRFXHFRDGVC 694



 Score =  198 bits (504), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 124/440 (28%), Positives = 228/440 (51%), Gaps = 18/440 (4%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLID---AYGKCDLVQYAHHLLEEMPQRDHVSWASILT 77
           +V+ +HAQ+IK GLH      + L++        D   YA  + + + + + + W ++  
Sbjct: 3   SVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFR 62

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
            +  ++ P   + ++  M++L  L PD + F  L+K+C      + G+Q+H   +   F 
Sbjct: 63  GHALSSDPVSALKLYLVMISLG-LLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFD 121

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            D  V +SL+ MYA+ G   +AR VFD    ++ VS+TA+++ Y   G  + A ++F++ 
Sbjct: 122 LDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEI 181

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P +++  W A++SG V++ N  +A   F EM        D   + ++V ACA    +ELG
Sbjct: 182 PGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELG 241

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           + +H  +   G+ S L I NA++D+Y+K  ++  A ++F  +  KDV+SW ++I G    
Sbjct: 242 RHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHM 301

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR-------KLFKSMIEDYG 370
              +E L L+ EM+ +G  PN+VT + ++ AC+H+G +  GR       K  K ++ +  
Sbjct: 302 NLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTN-- 359

Query: 371 ITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVA 430
              SLQ  T L+D+ ++ G +D A+ +  +        TW A++S    H        + 
Sbjct: 360 -VSSLQ--TSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIF 416

Query: 431 NHLL--SLKPEDPSSYILLS 448
           + +    ++P+D +   LLS
Sbjct: 417 SRMRMNGIEPDDITFVGLLS 436


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/576 (34%), Positives = 327/576 (56%), Gaps = 39/576 (6%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLE---EMPQRDHVSWASILTAYNQANLPQKTISIFSTML 96
           L   LI  Y  C  V  A  + +   E P  + V W ++   Y++     + + ++  ML
Sbjct: 109 LKTKLITLYSVCGRVNEARRVFQIDDEKPPEEPV-WVAMAIGYSRNGFSHEALLLYRDML 167

Query: 97  ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD-DDVVKSSLVDMYAKCGL 155
           +   ++P +F F+  +KAC  L    +G+ +HA  V     + D VV ++L+ +Y + G 
Sbjct: 168 SC-CVKPGNFAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVVNNALLGLYVEIG- 225

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
                  FD +                        +++FE+ P RN+  W  L++G    
Sbjct: 226 ------CFDEV------------------------LKVFEEMPQRNVVSWNTLIAGFAGQ 255

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI 275
               +   +F  M+REG+     + L++++  CA    L  GK+IHG ++     + + +
Sbjct: 256 GRVFETLSAFRVMQREGMGF-SWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPL 314

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
            N+++DMYAKC +I   + +F RM  KD+ SW +++ G + +GQ  E L L+DEM+  G+
Sbjct: 315 LNSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGI 374

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
           +PN +TFV L+  CSH GL  +G++LF ++++D+G+ PSL+HY CL+D+L RSG  DEA 
Sbjct: 375 EPNGITFVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEAL 434

Query: 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
           ++ + +P  P    W +LL++C+ + N  +   VA  L  ++P +P +Y++LSN+YA+A 
Sbjct: 435 SVAENIPMRPSGSIWGSLLNSCRLYGNVALAEVVAERLFEIEPNNPGNYVMLSNIYANAG 494

Query: 456 MWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETS-HPLKDEIFELLTELDAEM 514
           MW+ V +VR++M++  +KK+ G S+I+     H F AG +S      E  ++  EL   +
Sbjct: 495 MWEDVKRVREMMALTGMKKDAGCSWIQIKHKIHTFVAGGSSDFRCSAEYKKIWNELSNAV 554

Query: 515 KRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCH 574
           K  GYVP+T  VLHD+ ++ K   +  HSERLA  + L+ +  G  +R+ KNLRVC DCH
Sbjct: 555 KNLGYVPNTGVVLHDINEEMKAVWVCEHSERLAAVFALINTGAGMPIRITKNLRVCVDCH 614

Query: 575 IVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             MK +S++T+R IV+RD  R+HHF++G CSC D+W
Sbjct: 615 SWMKAVSKVTRRLIVLRDTNRFHHFENGSCSCKDYW 650



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 104/215 (48%), Gaps = 14/215 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGP----LPNTLIDAYGKCDLVQYAHHLLEEMP 65
           L+ C+    AL  + +HAQI+K   H  G     + N L+  Y +         + EEMP
Sbjct: 182 LKACSDLDNALVGRAIHAQIVK---HDVGEADQVVNNALLGLYVEIGCFDEVLKVFEEMP 238

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           QR+ VSW +++  +       +T+S F  M   + +        +++  C  + A   GK
Sbjct: 239 QRNVVSWNTLIAGFAGQGRVFETLSAFRVM-QREGMGFSWITLTTMLPVCAQVTALHSGK 297

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           ++H   + S    D  + +SL+DMYAKCG       VFD +  K+  SW  ML+ ++ +G
Sbjct: 298 EIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSING 357

Query: 186 RKKDAMEIFEQAPVR-----NLFLWTALVSGLVQS 215
           +  +A+ +F++  +R     N   + AL+SG   S
Sbjct: 358 QIHEALCLFDEM-IRYGIEPNGITFVALLSGCSHS 391



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 134/313 (42%), Gaps = 41/313 (13%)

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIF----EQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           L+N    T +++ Y+  GR  +A  +F    E+ P     +W A+  G  ++    +A  
Sbjct: 104 LENPTLKTKLITLYSVCGRVNEARRVFQIDDEKPPEEP--VWVAMAIGYSRNGFSHEALL 161

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY-ESCLFISNAIVDM 282
            + +M    V   +    S  + AC++     +G+ IH  ++     E+   ++NA++ +
Sbjct: 162 LYRDMLSCCVKPGN-FAFSMALKACSDLDNALVGRAIHAQIVKHDVGEADQVVNNALLGL 220

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           Y +         +F  M +++VVSW ++I G A  G+  ETL+ +  M   G+  + +T 
Sbjct: 221 YVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFETLSAFRVMQREGMGFSWITL 280

Query: 343 VGLIYACSHV----------GLVGKGRK-----LFKSMIEDYGI---------------T 372
             ++  C+ V          G + K RK     L  S+++ Y                 +
Sbjct: 281 TTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDRMHS 340

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRV 429
             L  +  +L   S +G + EA  L   M     EP+  T+ ALLS C H   T  G R+
Sbjct: 341 KDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGITFVALLSGCSHSGLTSEGKRL 400

Query: 430 ANHLLSLKPEDPS 442
            ++++      PS
Sbjct: 401 FSNVMQDFGVQPS 413



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 89/174 (51%), Gaps = 5/174 (2%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VCA+     + K +H QI+K   +   PL N+L+D Y KC  + Y   + + M  +D 
Sbjct: 284 LPVCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMDMYAKCGEIGYCEKVFDRMHSKDL 343

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW ++L  ++      + + +F  M+    ++P+   F +L+  C   G T  GK++ +
Sbjct: 344 TSWNTMLAGFSINGQIHEALCLFDEMIRYG-IEPNGITFVALLSGCSHSGLTSEGKRLFS 402

Query: 130 CFVLSPFCDDDVVK--SSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSA 180
             V+  F     ++  + LVD+  + G  + A +V ++I ++ S S W ++L++
Sbjct: 403 -NVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENIPMRPSGSIWGSLLNS 455


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/600 (36%), Positives = 328/600 (54%), Gaps = 46/600 (7%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHV-SWASILTAYNQAN 83
           +H   ++ G  ++  + ++L+  Y K   +  A  + +       + +W ++++ Y  A 
Sbjct: 81  IHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAG 140

Query: 84  LPQKTISIFSTMLALD-KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF--CDDD 140
             +  + +F  M   + + QPD F FASL+KAC  LGATR G QVHA    S F    + 
Sbjct: 141 HGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASGFSTASNA 200

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
           ++  +LVDMY KC                                R   AM++FE+   +
Sbjct: 201 ILAGALVDMYVKCR-------------------------------RLPVAMQVFERLERK 229

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           N+  WTA+V G  Q     +A   F    R G    D  VLSS+VG  A+FA++E G+Q+
Sbjct: 230 NVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARP-DSHVLSSVVGVLADFALVEQGRQV 288

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H   I     + +   N+IVDMY KC     A+ +F  MR  +VVSWT+++ G  +HG  
Sbjct: 289 HCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLG 348

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
            E +AL++EM + GV+P+EVT++ L+ ACSH GLV + R+ F  +  D  + P  +HY C
Sbjct: 349 REAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYAC 408

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DLL R+G L EA +LI+ MP EP    W  LLSAC+ H++  +G    + LL++  ++
Sbjct: 409 MVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDN 468

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAG---ETSH 497
           P +Y+ LSNV A A  W+   KVR  M    +KK+ G S++E GK  H FY G   E +H
Sbjct: 469 PVNYVTLSNVLAEAGEWRECHKVRDAMRRRGLKKQGGCSWVEVGKEVHFFYGGGGEEETH 528

Query: 498 PLKDEIFELLTELDAEMKRR-GYVPDTSS-VLHDMEQKEKERQLFWHSERLAVAYGLLKS 555
           P   +I  +L +++  M+ + GY  D +   LHD++++ +   L  HSERLAV   LL++
Sbjct: 529 PQAGDIRRVLRDMETRMREQLGYNADDARFALHDVDEESRAESLRAHSERLAVGLWLLRN 588

Query: 556 VP-----GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
                  G  +RV KNLRVCGDCH   K +S + +R +VVRDA R+H F+ G CSC D+W
Sbjct: 589 GVDGGGHGEPIRVYKNLRVCGDCHEFFKGLSAVVRRALVVRDANRFHRFEHGSCSCKDYW 648



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 3/188 (1%)

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           Y + G    A E+F     RN+  WTAL+ G ++  +         EMR       +   
Sbjct: 2   YVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYT 61

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF-GRM 299
           LS+ + AC        G  IHGL +  GY+    +++++V +Y+K   I  A+ +F G  
Sbjct: 62  LSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAG 121

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMV--SAGVKPNEVTFVGLIYACSHVGLVGK 357
               + +W +++ G A  G   + L ++ EM       +P+E TF  L+ ACS +G   +
Sbjct: 122 LGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATRE 181

Query: 358 GRKLFKSM 365
           G ++  +M
Sbjct: 182 GAQVHAAM 189



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 125/305 (40%), Gaps = 64/305 (20%)

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG-VKPNEV 340
           MY KC ++  A ++FG MR ++VVSWT+++VG  +HG A   L L  EM +A    PNE 
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60

Query: 341 TFVGLIYAC-----------------------------------SHVGLVGKGRKLFKSM 365
           T    + AC                                   S  G +G  R++F   
Sbjct: 61  TLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVF--- 117

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM-----PFEPDEPTWAALLSACKHH 420
            +  G+   +  +  ++   + +GH  +A  + + M       +PDE T+A+LL AC   
Sbjct: 118 -DGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGL 176

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
             T  G +V   + +      S +   SN   + A+     K R+L   M+V     +  
Sbjct: 177 GATREGAQVHAAMTA------SGFSTASNAILAGALVDMYVKCRRLPVAMQV-----FER 225

Query: 481 IEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTS------SVLHDMEQKE 534
           +E  K    + A    H  + ++ E L EL     R G  PD+        VL D    E
Sbjct: 226 LER-KNVIQWTAVVVGHAQEGQVTEAL-ELFRRFWRSGARPDSHVLSSVVGVLADFALVE 283

Query: 535 KERQL 539
           + RQ+
Sbjct: 284 QGRQV 288


>gi|302781642|ref|XP_002972595.1| hypothetical protein SELMODRAFT_97496 [Selaginella moellendorffii]
 gi|300160062|gb|EFJ26681.1| hypothetical protein SELMODRAFT_97496 [Selaginella moellendorffii]
          Length = 606

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/604 (34%), Positives = 325/604 (53%), Gaps = 35/604 (5%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           LHR   CA  +       LHA ++  G  +   L N L+ AYG+C  V+ AH +    P 
Sbjct: 38  LHR---CAAERALPQAHQLHALMLATGALRSRYLSNKLVQAYGQCGDVESAHAVFACQPD 94

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
            +  SW  +++A  +  LP+  +  +  M  L    PD  V +++  A        LG+ 
Sbjct: 95  PNVFSWMMLISACLRNALPRAALGHYRAM-QLRGCHPDAHVVSAIFCAVADTANLELGRS 153

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           + A    +    D VV +SL++MY +CG  ++    F ++  ++ VSWT ML+   + GR
Sbjct: 154 ITAPLASTAMLHDPVVANSLLNMYRRCGGMDDFERAFWAMPSRDEVSWTTMLAGRIQCGR 213

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
           +  A+E+                                  M ++G  I   L  +++V 
Sbjct: 214 EASALELLRV-------------------------------MDQDGFRITSALTFATLVD 242

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           AC N + +  G+ +H  +I  G    + +  A+++MYAKC  +  A+++F +    + ++
Sbjct: 243 ACGNLSAIAQGRHLHDRIITSGVCIDVVLHTALLNMYAKCGRVDEARELFDQTLEPNNIT 302

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           ++S++V  A++G   + L L+  M   G KP+ VTF  ++YACSH G V +    F ++ 
Sbjct: 303 FSSMVVAYARNGHFGDALKLFWSMEQDGYKPDSVTFTHVLYACSHGGFVDQAWHYFTTLE 362

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
            D GI    +H+ C +DLL+R+G L +AE  +  MP  PD  +W +LL AC+ HRN E+G
Sbjct: 363 PDRGIPLVAEHFGCAVDLLARAGWLADAEKFLNRMPIPPDSVSWMSLLQACRIHRNVEIG 422

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
            R A H+  L P     Y LLSN+Y+ A  W   +KV+KLM    +KK  G S+IE    
Sbjct: 423 ARAAEHVFRLAPHRAGPYSLLSNIYSDAGKWDMAAKVQKLMRDRGIKKPGGRSWIEINGK 482

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
           +  F  G++ HP   +I + +  +   MK  GYVPDT  VLHD E++EKE  L++HSE+L
Sbjct: 483 TSEFIVGDSWHPDLVQICQEIQRVSKVMKEHGYVPDTKQVLHDAEEEEKEDILYFHSEKL 542

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+  GL+K+ P T + +VKN+RVC DCH   K+IS++T+R+IV+RD   +HH +DGKCSC
Sbjct: 543 AIGLGLIKTPPKTTISIVKNIRVCPDCHTAAKVISKVTERKIVIRDINLFHHMEDGKCSC 602

Query: 607 NDFW 610
            D+W
Sbjct: 603 RDYW 606



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 138/317 (43%), Gaps = 37/317 (11%)

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN 170
           L+  C +  A     Q+HA  + +       + + LV  Y +CG   +A AVF      N
Sbjct: 37  LLHRCAAERALPQAHQLHALMLATGALRSRYLSNKLVQAYGQCGDVESAHAVFACQPDPN 96

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
             SW  ++SA  R+   + A+  +    +R                              
Sbjct: 97  VFSWMMLISACLRNALPRAALGHYRAMQLRGCH--------------------------- 129

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290
                 D  V+S+I  A A+ A LELG+ I   + +        ++N++++MY +C  + 
Sbjct: 130 -----PDAHVVSAIFCAVADTANLELGRSITAPLASTAMLHDPVVANSLLNMYRRCGGMD 184

Query: 291 AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK-PNEVTFVGLIYAC 349
             +  F  M  +D VSWT+++ G  Q G+    L L   M   G +  + +TF  L+ AC
Sbjct: 185 DFERAFWAMPSRDEVSWTTMLAGRIQCGREASALELLRVMDQDGFRITSALTFATLVDAC 244

Query: 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
            ++  + +GR L   +I   G+   +  +T LL++ ++ G +DEA  L      EP+  T
Sbjct: 245 GNLSAIAQGRHLHDRIITS-GVCIDVVLHTALLNMYAKCGRVDEARELFDQT-LEPNNIT 302

Query: 410 WAALLSACKHHRNTEMG 426
           +++++ A  + RN   G
Sbjct: 303 FSSMVVA--YARNGHFG 317


>gi|225427070|ref|XP_002275784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g31920
           [Vitis vinifera]
 gi|297742017|emb|CBI33804.3| unnamed protein product [Vitis vinifera]
          Length = 605

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 199/590 (33%), Positives = 335/590 (56%), Gaps = 34/590 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL--VQYAHHLLEEMPQRDHVSWASILTAYN 80
           K  HA+I+KLGL       + L+      D   + YA  +  +M +     + +++  + 
Sbjct: 48  KQSHARILKLGLFGDSFCASNLVATCALSDWGSMDYACSIFRQMDELGSFQFNTMMRGHV 107

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           +    ++ +  +  M A   ++PD+F + +L+KAC  L A   G QVHA  +     +D 
Sbjct: 108 KDMNTEEALITYKEM-AERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDV 166

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V++SL+ MY KCG      AVF+ +  ++  SW+A+++A+A  G               
Sbjct: 167 FVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLG--------------- 211

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
              +W+             D      +M  EG    +  +L S++ AC +   L+LG+ +
Sbjct: 212 ---MWS-------------DCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSV 255

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG ++       + +  ++++MY KC  +     +F +M +K+ +S++ +I G A HG  
Sbjct: 256 HGFLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYG 315

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
            E L ++ EM+  G++P+++ +VG++ ACSH GLV +G + F  M  ++GI P++QHY C
Sbjct: 316 REGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGC 375

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DL+ R+G +DEA  LIK+MP EP++  W +LLSA K H N + G   A  L  L  + 
Sbjct: 376 MVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQK 435

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
            S Y++LSN+YA A  W+ V+K R  M    + + PG+S +E  +  H F + +  HP  
Sbjct: 436 ASDYVVLSNMYAQAQRWEDVAKTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQS 495

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
           + ++E+L +++ ++K  GY PDT+ VL D++++EK+++L  HS++LA+AY L+ +  G+ 
Sbjct: 496 ESVYEMLYQMEWQLKFEGYSPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSP 555

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +R+V+NLR+C DCH   K+IS I  REI VRD  R+HHFKDG CSC D+W
Sbjct: 556 IRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 605



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 142/320 (44%), Gaps = 36/320 (11%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CAR         +HA I+KLGL     + N+LI  YGKC  +     + E+M +R  
Sbjct: 138 LKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSV 197

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW++++TA+    +    + +   M      + +  +  S++ AC  LGA  LG+ VH 
Sbjct: 198 ASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHG 257

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +    + +V++SL++MY KCG       +F  +  KN +S++ M+S  A  G  ++
Sbjct: 258 FLLRNVSGLNVIVETSLIEMYLKCGSLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGRE 317

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            + I                               F EM  +G++  D +V   ++ AC+
Sbjct: 318 GLRI-------------------------------FTEMLEQGLE-PDDIVYVGVLNACS 345

Query: 250 NFAVLELGKQ-IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSW 307
           +  +++ G Q  + + +  G E  +     +VD+  +   I  A ++   M    + V W
Sbjct: 346 HAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLW 405

Query: 308 TSIIVGTAQHG--QAEETLA 325
            S++  +  H   QA E  A
Sbjct: 406 RSLLSASKVHNNLQAGEIAA 425


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/587 (36%), Positives = 334/587 (56%), Gaps = 38/587 (6%)

Query: 26  HAQIIKLGLHQYGPLPNT-LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           H   + LGL        + L+D Y K    + A  +L+ + ++D V   +++  Y+Q   
Sbjct: 170 HGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGE 229

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
             + +  F +ML ++K+QP+ + +AS++ +CG+L     GK +H   V S F      ++
Sbjct: 230 DTEAVKAFQSML-VEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQT 288

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SL+ MY +C L +                               D++ +F+     N   
Sbjct: 289 SLLTMYLRCSLVD-------------------------------DSLLVFKCIKYPNQVT 317

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           WT+L+SGLVQ+  E  A   F +M R+ V   +   LSS +  C+N A+ E G+Q+HG+V
Sbjct: 318 WTSLISGLVQNGREETALIEFRKMMRDSVK-PNSFTLSSALRGCSNLAMFEEGRQVHGIV 376

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
              G++   +  + ++++Y KC     A+ +F  +   DV+S  ++I   AQ+G   E L
Sbjct: 377 SKYGFDRDKYAGSGLIELYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREAL 436

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            L++ M++ G++PN+VT + ++ AC++ GLV +G +LF S  +D  I  +  HY C++D+
Sbjct: 437 ELFERMINLGLQPNDVTVLSVLLACNNSGLVEEGCELFDSFRKD-KIMLTNDHYACMVDM 495

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
           L R+G L+EAE LI  +   PD   W  LLSACK HR  EM  R+   +L + P D  + 
Sbjct: 496 LGRAGRLEEAEMLITEVT-NPDLVLWRTLLSACKVHRKVEMAERITRKILEIAPGDEGTL 554

Query: 445 ILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGET-SHPLKDEI 503
           ILLSN+YAS   W+ V +++  M  M++KK P  S++E  K +H F AG+  SHP  ++I
Sbjct: 555 ILLSNLYASTGKWKRVIEMKSKMKEMKLKKNPAMSWVEIDKETHTFMAGDLFSHPNSEQI 614

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
            E L EL  + K  GYV D S V  DME+  KER L  HSE+LA+A+ + ++V G++ R+
Sbjct: 615 LENLEELIKKAKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAVWRNVGGSI-RI 673

Query: 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +KNLRVC DCH  +K++SRI KREI+ RD+ R+HHF+DG CSC D+W
Sbjct: 674 LKNLRVCVDCHSWIKIVSRIIKREIICRDSKRFHHFRDGSCSCGDYW 720



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 185/389 (47%), Gaps = 42/389 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLP---NTLIDAYGKCDLVQYAHHLLEEMPQ 66
           LR C   +    +K + AQ++K G     P+    + L+DA  KC  + YA  L + MP+
Sbjct: 54  LRQCIDERSISGIKNIQAQMLKSGF----PVELSGSKLVDASLKCGEIGYARQLFDGMPE 109

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           R  V+W SI+  Y +    ++ + ++  M++ + + PD +  +S+ KA   L   +  ++
Sbjct: 110 RHIVTWNSIIAYYIKHRRSKEAVEMYRLMIS-NNVLPDEYTLSSVFKAFSDLSLEKEAQR 168

Query: 127 VHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            H   V+      +V V S+LVDMY K                                G
Sbjct: 169 SHGLAVILGLEVSNVFVGSALVDMYVK-------------------------------FG 197

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
           + ++A  + ++   +++ L TAL+ G  Q   + +A  +F  M  E V   +    +S++
Sbjct: 198 KTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQ-PNEYTYASVL 256

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            +C N   +  GK IHGL++  G+ES L    +++ MY +CS +  +  +F  ++  + V
Sbjct: 257 ISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQV 316

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +WTS+I G  Q+G+ E  L  + +M+   VKPN  T    +  CS++ +  +GR++   +
Sbjct: 317 TWTSLISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQV-HGI 375

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
           +  YG        + L++L  + G  D A
Sbjct: 376 VSKYGFDRDKYAGSGLIELYGKCGCSDMA 404



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 103/420 (24%), Positives = 193/420 (45%), Gaps = 47/420 (11%)

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
           +  D L   H  F+ L++ C    +    K + A  + S F   ++  S LVD   KCG 
Sbjct: 39  ITCDSLTTTH-TFSQLLRQCIDERSISGIKNIQAQMLKSGF-PVELSGSKLVDASLKCGE 96

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
              AR +FD +  ++ V+W ++++ Y +  R K+A+E++      N+             
Sbjct: 97  IGYARQLFDGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNV------------- 143

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE-SCLF 274
                              + D   LSS+  A ++ ++ +  ++ HGL + LG E S +F
Sbjct: 144 -------------------LPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVF 184

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
           + +A+VDMY K      AK +  R+  KDVV  T++IVG +Q G+  E +  +  M+   
Sbjct: 185 VGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEK 244

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
           V+PNE T+  ++ +C ++  +G G KL   ++   G   +L   T LL +  R   +D++
Sbjct: 245 VQPNEYTYASVLISCGNLKDIGNG-KLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDS 303

Query: 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454
             + K + + P++ TW +L+S    +   E    +    +      P+S+ L S +   +
Sbjct: 304 LLVFKCIKY-PNQVTWTSLISGLVQNGREETAL-IEFRKMMRDSVKPNSFTLSSALRGCS 361

Query: 455 --AMWQHVSKVRKLMSVMEVKKEPGYSYIEF-GKGSHIFYAGETSHPLKDEIFELLTELD 511
             AM++   +V  ++S      + G+   ++ G G    Y       +   +F+ L+E+D
Sbjct: 362 NLAMFEEGRQVHGIVS------KYGFDRDKYAGSGLIELYGKCGCSDMARLVFDTLSEVD 415



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 134/305 (43%), Gaps = 45/305 (14%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  ++K G         +L+  Y +C LV  +  + + +   + V+W S+++   Q 
Sbjct: 269 KLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLISGLVQN 328

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +  +  F  M+  D ++P+ F  +S ++ C +L     G+QVH       F  D   
Sbjct: 329 GREETALIEFRKMMR-DSVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGFDRDKYA 387

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            S L+++Y KCG  + AR VFD++   + +S   M+ +YA++G  ++A+E+FE+      
Sbjct: 388 GSGLIELYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALELFER------ 441

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                    M   G+   D  VLS ++ AC N  ++E G ++  
Sbjct: 442 -------------------------MINLGLQPNDVTVLSVLL-ACNNSGLVEEGCELFD 475

Query: 263 ------LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
                 +++   + +C+      VDM  +   +  A+ +   +   D+V W +++     
Sbjct: 476 SFRKDKIMLTNDHYACM------VDMLGRAGRLEEAEMLITEVTNPDLVLWRTLLSACKV 529

Query: 317 HGQAE 321
           H + E
Sbjct: 530 HRKVE 534



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 17/199 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C+   +    + +H  + K G  +     + LI+ YGKC     A  + + + + D 
Sbjct: 357 LRGCSNLAMFEEGRQVHGIVSKYGFDRDKYAGSGLIELYGKCGCSDMARLVFDTLSEVDV 416

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +S  +++ +Y Q    ++ + +F  M+ L  LQP+     S++ AC + G    G     
Sbjct: 417 ISLNTMIYSYAQNGFGREALELFERMINLG-LQPNDVTVLSVLLACNNSGLVEEG----- 470

Query: 130 CFVLSPFCDDDVVKSS-----LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           C +   F  D ++ ++     +VDM  + G    A  +   +   + V W  +LSA  + 
Sbjct: 471 CELFDSFRKDKIMLTNDHYACMVDMLGRAGRLEEAEMLITEVTNPDLVLWRTLLSA-CKV 529

Query: 185 GRKKDAME-----IFEQAP 198
            RK +  E     I E AP
Sbjct: 530 HRKVEMAERITRKILEIAP 548


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/604 (35%), Positives = 326/604 (53%), Gaps = 33/604 (5%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L+ L  C      L+++ LH   ++        + N  I AY KC  + +A H+   M  
Sbjct: 420 LNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNT 479

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           +   SW +++  + Q   P K +  +  M  L  L PD F   SL+ ACG LG  + GK+
Sbjct: 480 KSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGIL-PDDFSIVSLLLACGRLGLLQYGKE 538

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +H   + +    +  V  SL+ +Y  C  P   R  F+++  KNSV              
Sbjct: 539 IHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVC------------- 585

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
                             W A++SG  Q+    +A   F +M  +G++  D + ++SI+G
Sbjct: 586 ------------------WNAMLSGYSQNELPNEALSLFRQMLSDGLE-PDEIAIASILG 626

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           AC+  + L LGK++H   +        F++ +++DMYAK   +  ++ IF R+  K+V S
Sbjct: 627 ACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVAS 686

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W  +I G   HGQ  + + L+++M  +  +P+  TF+G++ AC H GLV +G      M 
Sbjct: 687 WNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQ 746

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             Y + P L+HY C++D+L R+G L+EA N I  MP EPD   W++LLS+   + + EMG
Sbjct: 747 TLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMG 806

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
            + A  LL+L+     SYILLSN+YA+A  W  V  VR+ M  + ++K+ G S+IE    
Sbjct: 807 EKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGK 866

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            + F AGE S+P  DEI ++   L+ ++   GY PD S VLH++E+ EK + L  HSE++
Sbjct: 867 VYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKV 926

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+ +G L +  GT LR+ KNLR+C DCH   K IS+  KREIV+RD  R+HHFK G CSC
Sbjct: 927 AICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSC 986

Query: 607 NDFW 610
            D+W
Sbjct: 987 GDYW 990



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 134/542 (24%), Positives = 243/542 (44%), Gaps = 85/542 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K++H   +K+GL     + N +I  YGKC  +  A  L ++MP+++ +SW S++  +++ 
Sbjct: 230 KSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSEN 289

Query: 83  NLPQKTISIFSTML-ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
               +    F ++L + D L PD     +L+  C   G   +G  +H   V      + +
Sbjct: 290 GFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELM 349

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V ++L+DMY+KCG  + A  +F  I+ K+ VSW +M+ AY+R G   +  ++  +     
Sbjct: 350 VCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRK----- 404

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
             +W                      M  E +++ +  +L +++ AC   + L   + +H
Sbjct: 405 --MW----------------------MEEELMEVNEVTIL-NLLPACLEESELLSLRALH 439

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           G  +   ++    I+NA +  YAKC  ++ A+ +F  M  K V SW ++I G AQ+G   
Sbjct: 440 GYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPI 499

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED------------- 368
           + L  Y EM   G+ P++ + V L+ AC  +GL+  G+++   ++ +             
Sbjct: 500 KALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLL 559

Query: 369 ----------YGIT-------PSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEP 408
                     YG T        +   +  +L   S++   +EA +L + M     EPDE 
Sbjct: 560 SLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEI 619

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKP---EDPSSYILLSNVYASAAMWQHVSKVRK 465
             A++L AC       +G  V  H  +LK    ED      L ++YA +    H  ++  
Sbjct: 620 AIASILGACSQLSALGLGKEV--HCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFN 677

Query: 466 LMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSS 525
            ++  EV     ++ +  G G H    G+ +  +  E+FE       +MKR    PD  +
Sbjct: 678 RLNGKEV---ASWNVMITGFGVH----GQGNKAV--ELFE-------DMKRSDKQPDRFT 721

Query: 526 VL 527
            L
Sbjct: 722 FL 723



 Score =  138 bits (347), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 188/417 (45%), Gaps = 45/417 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VC+          +H   +KLGL     + N LID Y KC  +  A  L  ++  +  
Sbjct: 320 LPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSV 379

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKL-QPDHFVFASLVKACGSLGATRLGKQVH 128
           VSW S++ AY++     +T  +   M   ++L + +     +L+ AC         + +H
Sbjct: 380 VSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALH 439

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              +   F   +++ ++ +  YAKCG    A  VF  +  K+  S               
Sbjct: 440 GYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSS--------------- 484

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
                           W A++ G  Q+ + I A   + EM R G+ + D   + S++ AC
Sbjct: 485 ----------------WNAVIGGHAQNGDPIKALDFYFEMTRLGI-LPDDFSIVSLLLAC 527

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
               +L+ GK+IHG V+  G E   F++ +++ +Y  CS     +  F  M  K+ V W 
Sbjct: 528 GRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWN 587

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK-----LFK 363
           +++ G +Q+    E L+L+ +M+S G++P+E+    ++ ACS +  +G G++     L  
Sbjct: 588 AMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKN 647

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           S++ED  +  S      L+D+ ++SG L  ++ +   +    +  +W  +++    H
Sbjct: 648 SLMEDNFVACS------LMDMYAKSGFLGHSQRIFNRLN-GKEVASWNVMITGFGVH 697



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 148/313 (47%), Gaps = 34/313 (10%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   LI  Y  C     +  + + +  ++   W ++++ Y +  L  + I  F  ++++ 
Sbjct: 145 LNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVT 204

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           + QPD+F F  L+KAC       LGK VH   V      D  V ++++ +Y KCG  +  
Sbjct: 205 EFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLD-- 262

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
                                        +A+E+F++ P +NL  W +L+ G  ++   +
Sbjct: 263 -----------------------------EAVELFDKMPEQNLISWNSLIRGFSENGFWL 293

Query: 220 DAFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
           +A+ +F  +   G  ++ D   + +++  C+    +++G  IHG+ + LG    L + NA
Sbjct: 294 EAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNA 353

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDE--MVSAGVK 336
           ++DMY+KC  +  A  +F ++  K VVSW S+I   ++ G   ET  L  +  M    ++
Sbjct: 354 LIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELME 413

Query: 337 PNEVTFVGLIYAC 349
            NEVT + L+ AC
Sbjct: 414 VNEVTILNLLPAC 426



 Score =  117 bits (294), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 146/311 (46%), Gaps = 40/311 (12%)

Query: 111 LVKACGSLGATRLGKQVHACF-VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           L++ CG      +G+++     V S F  D V+ + L+ MY+ CG P  +R VFD  +L 
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFD--RLL 170

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI--DAFYSFIE 227
           N                             +NLF W ALVSG V  RNE+  +A ++F+E
Sbjct: 171 N-----------------------------KNLFQWNALVSGYV--RNELYDEAIHTFLE 199

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           +        D      ++ AC     + LGK +HG+ + +G    LF+ NA++ +Y KC 
Sbjct: 200 LISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCG 259

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA--GVKPNEVTFVGL 345
            +  A ++F +M  ++++SW S+I G +++G   E    +  ++ +  G+ P+  T V L
Sbjct: 260 FLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTL 319

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP 405
           +  CS  G V  G  +   M    G+   L     L+D+ S+ G L EA  L + +    
Sbjct: 320 LPVCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIE-NK 377

Query: 406 DEPTWAALLSA 416
              +W +++ A
Sbjct: 378 SVVSWNSMIGA 388


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/577 (35%), Positives = 329/577 (57%), Gaps = 43/577 (7%)

Query: 46  DAYGKCDLVQYAHHLL---------EEMPQRDHVSWASILTAYNQANLPQKTISIFSTML 96
           DAY    L+   HH           +E+P  + V   ++ +   + NL   T+SIF +M+
Sbjct: 123 DAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCMRNNLVYTTLSIFRSMV 182

Query: 97  ALDKLQP-DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
           A       D       + A   +    +   +HA            V ++++D YAK G 
Sbjct: 183 ASGSAGVVDEAAALVALSASARVPDRGITGGIHALVSKIGLDGQTGVANTIIDAYAKGGG 242

Query: 156 PN--NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLV 213
            +   AR +FD +  ++ VSW  M++ YA++G   +A+ ++ +           +V G V
Sbjct: 243 HDLGAARKLFDMMD-RDVVSWNTMIALYAQNGLSTEALGLYSK---------MLIVGGDV 292

Query: 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
           +                      + + LS+++ ACA+   ++ GK+IH  V+ +G E  +
Sbjct: 293 R---------------------CNAVTLSAVLLACAHAGAIQTGKRIHNQVVRMGLEDNV 331

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
           ++  ++VDMY+KC  +  A   F +++ K+++SW+++I G   HG  +E L ++ +M  +
Sbjct: 332 YVGTSVVDMYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKS 391

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
           G+KPN +TF+ ++ ACSH GL+ +GR  + +M  ++GI P ++HY C++DLL R+G LDE
Sbjct: 392 GLKPNYITFITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDE 451

Query: 394 AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453
           A  LIK M  +PD   W ALLSAC+ ++N E+    A  L  L   +   Y+LLSN+YA 
Sbjct: 452 AYGLIKEMKVKPDAALWGALLSACRIYKNVELAKICAERLFELDATNSGYYVLLSNIYAE 511

Query: 454 AAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAE 513
           A MW+ V ++R L+    ++K PGYS +E    +H+FY G+ SHP   EI+  L +L   
Sbjct: 512 AGMWKEVERMRVLVKTRGIEKPPGYSSVELKGKTHLFYVGDKSHPQYKEIYAYLEKLLER 571

Query: 514 MKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDC 573
           +   GYVP+T SVLHD++ +E+E  L  HSE+LAVA+ L+ SV G+V+ V+KNLRVC DC
Sbjct: 572 IHDAGYVPNTGSVLHDLDVEERESMLRIHSEKLAVAFALMNSVQGSVIHVIKNLRVCTDC 631

Query: 574 HIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           H  +K+I+++T REI++RD  R+HHFKDG CSC D+W
Sbjct: 632 HAAIKIITKLTGREIIIRDLKRFHHFKDGLCSCGDYW 668


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/589 (35%), Positives = 323/589 (54%), Gaps = 35/589 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  ++K    +   + N  +D Y K D V     L  EMP+ D VS+  I+TAY   
Sbjct: 261 QQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWV 320

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +++I +F   L        +F F +++    S    ++G+Q+HA  V+S    D  V
Sbjct: 321 GKVKESIDLFQE-LQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLHAQVVVSMADPDFRV 379

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +SLVDMYAKCG                               + ++A  IF +   R+ 
Sbjct: 380 SNSLVDMYAKCG-------------------------------KFEEADRIFLRLSSRST 408

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WTA++S  VQ     +    F EMRR  V   D    + ++ A AN A + LGKQ+H 
Sbjct: 409 VPWTAMISANVQRGLHENGLKLFYEMRRANVS-ADQATFACVLKASANLASILLGKQLHS 467

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            VI  G+ + ++   A++DMYA C+ I  A   F  M  ++VV+W +++   AQ+G  + 
Sbjct: 468 CVIRSGFMN-VYSGCALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKG 526

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
           TL  ++EM+ +G +P+ V+F+ ++ ACSH  LV +G K F  M   Y + P  +HYT ++
Sbjct: 527 TLKSFEEMIMSGYQPDSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTAMV 586

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP-EDP 441
           D L RSG  DEAE L+  MPFEPDE  W ++L++C+ H+N  +  + A  L ++K   D 
Sbjct: 587 DALCRSGRFDEAEKLMGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKVLRDA 646

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
           + Y+ +SN++A A  W  V KV+K M    V+K P YS++E     H+F A +  HP + 
Sbjct: 647 APYVTMSNIFAEAGQWDSVVKVKKAMRDRGVRKLPAYSWVEIKHKVHVFSANDDKHPQQL 706

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           EI   +  L  +M++ GY PD S    +++++ K   L +HSERLA+A+ L+ +  G+ +
Sbjct: 707 EILRKIEMLAEQMEKEGYDPDISCAHQNVDKESKIDSLKYHSERLAIAFALINTPEGSPI 766

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            V+KNLR C DCH  +K+IS+I  REI VRD+ R+HHF+DG CSC D+W
Sbjct: 767 LVMKNLRACTDCHAAIKVISKIVGREITVRDSNRFHHFRDGSCSCGDYW 815



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/411 (27%), Positives = 195/411 (47%), Gaps = 36/411 (8%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  L  C   ++A  +   HAQI+KLG H    + NTL+D+Y K   +  A  L  EM 
Sbjct: 143 YITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTGGLDSARRLFLEMC 202

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
             D VS+  ++T Y    L ++ I +F  M  L   +P  F FA+++ A   L  T  G+
Sbjct: 203 GWDSVSFNVMITGYANNGLNEEAIELFVEMQNLG-FKPSDFTFAAVISASVGLDDTAFGQ 261

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q+H   V + F  +  V ++ +D Y+K    N  R +F+ +   + VS+  +++AYA  G
Sbjct: 262 QIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEVRKLFNEMPELDGVSYNVIITAYAWVG 321

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
           + K+++++F++                            F    R+      P +LS   
Sbjct: 322 KVKESIDLFQE--------------------------LQFTTFDRKNFPF--PTMLS--- 350

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
              A+   L++G+Q+H  V+    +    +SN++VDMYAKC     A  IF R+  +  V
Sbjct: 351 -IAASSLDLQMGRQLHAQVVVSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTV 409

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
            WT++I    Q G  E  L L+ EM  A V  ++ TF  ++ A +++  +  G++L   +
Sbjct: 410 PWTAMISANVQRGLHENGLKLFYEMRRANVSADQATFACVLKASANLASILLGKQLHSCV 469

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           I    +  ++     LLD+ +    + +A    + M  E +  TW ALLSA
Sbjct: 470 IRSGFM--NVYSGCALLDMYANCASIKDAIKTFEEMS-ERNVVTWNALLSA 517



 Score =  102 bits (255), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 119/262 (45%), Gaps = 11/262 (4%)

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           AR + D +  +NS S   ++S Y +SG    A  IF+    R +  WT ++    +S   
Sbjct: 62  ARQLLDQMPNRNSFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRF 121

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            DAF  F EM R G    D +   +++  C +  V +   Q H  ++ LG+     + N 
Sbjct: 122 GDAFKLFAEMHRSGSQ-PDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNT 180

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++D Y K   + +A+ +F  M   D VS+  +I G A +G  EE + L+ EM + G KP+
Sbjct: 181 LLDSYFKTGGLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPS 240

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY----TCLLDLLSRSGHLDEA 394
           + TF  +I A      VG     F   I  + +  S           LD  S+   ++E 
Sbjct: 241 DFTFAAVISAS-----VGLDDTAFGQQIHGFVVKTSFIRNVFVGNAFLDFYSKHDCVNEV 295

Query: 395 ENLIKAMPFEPDEPTWAALLSA 416
             L   MP E D  ++  +++A
Sbjct: 296 RKLFNEMP-ELDGVSYNVIITA 316


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/604 (35%), Positives = 336/604 (55%), Gaps = 35/604 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGP---LPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L + A+H       ++HA  ++  L Q      +   L+D Y KC  + YA  +   MP 
Sbjct: 209 LPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPV 268

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           R+ V+W++++  +   +   +  ++F  ML            AS ++ C SL    +G Q
Sbjct: 269 RNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ 328

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +HA                   + AK G+  +  A              ++LS YA++G 
Sbjct: 329 LHA-------------------LIAKSGIHADLTAS------------NSLLSMYAKAGL 357

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
             +A   F++  V++   + AL+SG VQ+    +AF  F +M+   ++  D   + S++ 
Sbjct: 358 INEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNME-PDIATMVSLIP 416

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           AC++ A L+ GK  HG VI  G      I N+++DMYAKC  I  ++ +F +M  +DVVS
Sbjct: 417 ACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVS 476

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W ++I G   HG  +E   L+  M + G  P++VTF+ LI ACSH GLV +G+  F +M 
Sbjct: 477 WNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMT 536

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             YGI P ++HY C++DLL+R G LDEA   I++MP + D   W ALL AC+ H+N ++G
Sbjct: 537 HKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLG 596

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
            +V+  +  L PE   +++LLSN++++A  +   ++VR +  V   KK PGYS+IE    
Sbjct: 597 KQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGS 656

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            H F  G+ SHP   +I+  L  +  ++K+ GY  DTS VL D+E++EKE+ L +HSE+L
Sbjct: 657 LHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKL 716

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+A+G+L       + V KNLRVCGDCH  +K ++ +  R I+VRD  R+HHFK+G+CSC
Sbjct: 717 AIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSC 776

Query: 607 NDFW 610
            +FW
Sbjct: 777 GNFW 780



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 188/434 (43%), Gaps = 69/434 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +T+HA     GLH    +   LID Y +C     A ++  +MP RD V+W ++L  Y   
Sbjct: 120 RTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANH 179

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA-CF--VLSPFCDD 139
            +    I+    M     L+P+     SL+      GA   G  +HA C    L    + 
Sbjct: 180 GMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQ 239

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
            ++ ++L+DMYAKC     A  VF  + ++N V+W+A++  +    R  +A  +F+    
Sbjct: 240 VLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFK---- 295

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                      +M  EG+  +    ++S +  CA+ A L +G Q
Sbjct: 296 ---------------------------DMLVEGLCFLSATSVASALRVCASLADLHMGTQ 328

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           +H L+   G  + L  SN+++ MYAK   I  A   F  +  KD +S+ +++ G  Q+G+
Sbjct: 329 LHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGK 388

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
           AEE   ++ +M +  ++P+  T V LI ACSH+  +  G+    S+I   G+        
Sbjct: 389 AEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVI-IRGLALETSICN 447

Query: 380 CLLDLLSRSGHLDEAENLIKAMP----------------------------------FEP 405
            L+D+ ++ G +D +  +   MP                                  F P
Sbjct: 448 SLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAP 507

Query: 406 DEPTWAALLSACKH 419
           D+ T+  L++AC H
Sbjct: 508 DDVTFICLIAACSH 521



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 163/372 (43%), Gaps = 38/372 (10%)

Query: 57  AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116
           A  + + +P  D  ++ +++ AY+        I ++ +ML   ++ P+ + F  ++KAC 
Sbjct: 53  ARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRF-RVAPNKYTFPFVLKACS 111

Query: 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTA 176
           +L   R G+ +HA    +    D  V ++L+D+Y +C     AR VF  + +++ V+W A
Sbjct: 112 ALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNA 171

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
           ML+ YA  G    A+                                  ++M+  G    
Sbjct: 172 MLAGYANHGMYHHAIA-------------------------------HLLDMQDHGGLRP 200

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC---LFISNAIVDMYAKCSDIIAAK 293
           +   L S++   A    L  G  IH   +    E     + I  A++DMYAKC  ++ A 
Sbjct: 201 NASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYAC 260

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVG-LIYACSHV 352
            +F  M  ++ V+W+++I G     +  E   L+ +M+  G+     T V   +  C+ +
Sbjct: 261 RVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASL 320

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
             +  G +L  ++I   GI   L     LL + +++G ++EA      +  + D  ++ A
Sbjct: 321 ADLHMGTQL-HALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGA 378

Query: 413 LLSACKHHRNTE 424
           LLS C  +   E
Sbjct: 379 LLSGCVQNGKAE 390



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 120/263 (45%), Gaps = 21/263 (7%)

Query: 165 SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALV---SGLVQSRNEIDA 221
           S ++K+   W   L  +   G+   A ++F++ P  +   + AL+   S L      ID 
Sbjct: 28  SYEVKDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDL 87

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
           + S +  R        P VL     AC+    L  G+ IH    A G  + LF+S A++D
Sbjct: 88  YRSMLRFRVAPNKYTFPFVLK----ACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALID 143

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA-LYDEMVSAGVKPNEV 340
           +Y +C+    A+++F +M  +DVV+W +++ G A HG     +A L D     G++PN  
Sbjct: 144 LYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNAS 203

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY-------TCLLDLLSRSGHLDE 393
           T V L+   +  G + +G     + I  Y +   L+         T LLD+ ++   L  
Sbjct: 204 TLVSLLPLLAQHGALFQG-----TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVY 258

Query: 394 AENLIKAMPFEPDEPTWAALLSA 416
           A  +   MP   D  TW+AL+  
Sbjct: 259 ACRVFHGMPVRND-VTWSALIGG 280


>gi|357126224|ref|XP_003564788.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Brachypodium distachyon]
          Length = 515

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 201/541 (37%), Positives = 308/541 (56%), Gaps = 32/541 (5%)

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V++ + ++  ++A L Q+ +++F  M A   L  D + F  ++ +   L        +HA
Sbjct: 7   VAYNAAISRCSRAGLHQRALALFHEMRAARGLPADEYTFPPILNSAALLRVPAAADALHA 66

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +       V ++LVD YAK      ARA+FD +  ++ V+WT++L+  ARSG    
Sbjct: 67  LLLRAGLVAHLHVANALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGSHDA 126

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ ++                 +V S  E D +                 V+++ + +CA
Sbjct: 127 ALRVYRD---------------MVASGVEPDEY-----------------VVAAALSSCA 154

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LELG+ +H   + LG E  L + N++V MYAK   +  A+ +F   R +  V+WT+
Sbjct: 155 GSTTLELGQSVHATAVRLGLEPFLSVGNSLVSMYAKTGSLREARKVFDATRLRCPVTWTA 214

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +IVG AQ+G+ EE+L +Y EMV +G +P+ VTF+GL++ACSH GLV  GR  FKSM  D+
Sbjct: 215 LIVGYAQNGRGEESLQVYAEMVHSGCRPDYVTFIGLLFACSHAGLVDAGRAHFKSMQADH 274

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GITP   HY C++D+L R+G LDEA  L+     + D   W ALL AC+ HRN E+  R 
Sbjct: 275 GITPGPDHYACMVDVLGRAGRLDEAMELLDQSTMKLDATVWKALLGACRTHRNAELAERA 334

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  +  L P D   YI+LSN+Y+    W  V+++R LM    + KEPG S++     +H+
Sbjct: 335 AEMVWRLDPTDAVPYIMLSNLYSRERRWSDVARIRTLMKSRGIAKEPGCSWVVASGVTHL 394

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           FY  +  HP  DEI+  + E+  +++  G+V DT   L D   + +E+ L  HSERLAVA
Sbjct: 395 FYVEDRGHPRTDEIYRKVEEMMEKVRAEGFVADTDWALQDEAPEGREKGLAHHSERLAVA 454

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GLL    G  +RV KNLRVCGDCH+ +KM++++  REI++RD+  +HH +DG CSC D+
Sbjct: 455 FGLLALPAGAPVRVFKNLRVCGDCHVAIKMVAKVYGREIILRDSNCFHHMRDGVCSCGDY 514

Query: 610 W 610
           W
Sbjct: 515 W 515



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/158 (36%), Positives = 92/158 (58%), Gaps = 7/158 (4%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+DAY K      A  L +EMP+RD V+W S+LT   ++      + ++  M+A   +
Sbjct: 81  NALVDAYAKLSRGGAARALFDEMPRRDVVTWTSLLTGLARSGSHDAALRVYRDMVA-SGV 139

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFV---LSPFCDDDVVKSSLVDMYAKCGLPNN 158
           +PD +V A+ + +C       LG+ VHA  V   L PF     V +SLV MYAK G    
Sbjct: 140 EPDEYVVAAALSSCAGSTTLELGQSVHATAVRLGLEPFLS---VGNSLVSMYAKTGSLRE 196

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           AR VFD+ +L+  V+WTA++  YA++GR +++++++ +
Sbjct: 197 ARKVFDATRLRCPVTWTALIVGYAQNGRGEESLQVYAE 234



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/242 (21%), Positives = 106/242 (43%), Gaps = 43/242 (17%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        +++HA  ++LGL  +  + N+L+  Y K   ++ A  + +    R  
Sbjct: 150 LSSCAGSTTLELGQSVHATAVRLGLEPFLSVGNSLVSMYAKTGSLREARKVFDATRLRCP 209

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W +++  Y Q    ++++ +++ M+     +PD+  F  L+ AC            HA
Sbjct: 210 VTWTALIVGYAQNGRGEESLQVYAEMVH-SGCRPDYVTFIGLLFACS-----------HA 257

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-----WTAMLSAYARS 184
                                   GL +  RA F S++  + ++     +  M+    R+
Sbjct: 258 ------------------------GLVDAGRAHFKSMQADHGITPGPDHYACMVDVLGRA 293

Query: 185 GRKKDAMEIFEQAPVR-NLFLWTALVSGLVQSRN-EIDAFYSFIEMRREGVDIVDPLVLS 242
           GR  +AME+ +Q+ ++ +  +W AL+      RN E+    + +  R +  D V  ++LS
Sbjct: 294 GRLDEAMELLDQSTMKLDATVWKALLGACRTHRNAELAERAAEMVWRLDPTDAVPYIMLS 353

Query: 243 SI 244
           ++
Sbjct: 354 NL 355


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/604 (35%), Positives = 336/604 (55%), Gaps = 35/604 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGP---LPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L + A+H       ++HA  ++  L Q      +   L+D Y KC  + YA  +   MP 
Sbjct: 209 LPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPV 268

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           R+ V+W++++  +   +   +  ++F  ML            AS ++ C SL    +G Q
Sbjct: 269 RNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQ 328

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +HA                   + AK G+  +  A              ++LS YA++G 
Sbjct: 329 LHA-------------------LIAKSGIHADLTAS------------NSLLSMYAKAGL 357

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
             +A   F++  V++   + AL+SG VQ+    +AF  F +M+   ++  D   + S++ 
Sbjct: 358 INEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQACNME-PDIATMVSLIP 416

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           AC++ A L+ GK  HG VI  G      I N+++DMYAKC  I  ++ +F +M  +DVVS
Sbjct: 417 ACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKIDLSRQVFDKMPARDVVS 476

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W ++I G   HG  +E   L+  M + G  P++VTF+ LI ACSH GLV +G+  F +M 
Sbjct: 477 WNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACSHSGLVTEGKHWFDTMT 536

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             YGI P ++HY C++DLL+R G LDEA   I++MP + D   W ALL AC+ H+N ++G
Sbjct: 537 HKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLG 596

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
            +V+  +  L PE   +++LLSN++++A  +   ++VR +  V   KK PGYS+IE    
Sbjct: 597 KQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGYSWIEINGS 656

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            H F  G+ SHP   +I+  L  +  ++K+ GY  DTS VL D+E++EKE+ L +HSE+L
Sbjct: 657 LHAFVGGDQSHPCSRDIYHELDNIMVDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKL 716

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+A+G+L       + V KNLRVCGDCH  +K ++ +  R I+VRD  R+HHFK+G+CSC
Sbjct: 717 AIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDTNRFHHFKNGQCSC 776

Query: 607 NDFW 610
            +FW
Sbjct: 777 GNFW 780



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 188/434 (43%), Gaps = 69/434 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +T+HA     GLH    +   LID Y +C     A ++  +MP RD V+W ++L  Y   
Sbjct: 120 RTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANH 179

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA-CF--VLSPFCDD 139
            +    I+    M     L+P+     SL+      GA   G  +HA C    L    + 
Sbjct: 180 GMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQ 239

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
            ++ ++L+DMYAKC     A  VF  + ++N V+W+A++  +    R  +A  +F+    
Sbjct: 240 VLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFK---- 295

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                      +M  EG+  +    ++S +  CA+ A L +G Q
Sbjct: 296 ---------------------------DMLVEGLCFLSATSVASALRVCASLADLHMGTQ 328

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           +H L+   G  + L  SN+++ MYAK   I  A   F  +  KD +S+ +++ G  Q+G+
Sbjct: 329 LHALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGK 388

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
           AEE   ++ +M +  ++P+  T V LI ACSH+  +  G+    S+I   G+        
Sbjct: 389 AEEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVI-IRGLALETSICN 447

Query: 380 CLLDLLSRSGHLDEAENLIKAMP----------------------------------FEP 405
            L+D+ ++ G +D +  +   MP                                  F P
Sbjct: 448 SLIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAP 507

Query: 406 DEPTWAALLSACKH 419
           D+ T+  L++AC H
Sbjct: 508 DDVTFICLIAACSH 521



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 163/372 (43%), Gaps = 38/372 (10%)

Query: 57  AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116
           A  + + +P  D  ++ +++ AY+        I ++ +ML   ++ P+ + F  ++KAC 
Sbjct: 53  ARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRF-RVAPNKYTFPFVLKACS 111

Query: 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTA 176
           +L   R G+ +HA    +    D  V ++L+D+Y +C     AR VF  + +++ V+W A
Sbjct: 112 ALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNVFAKMPMRDVVAWNA 171

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
           ML+ YA  G    A+                                  ++M+  G    
Sbjct: 172 MLAGYANHGMYHHAIA-------------------------------HLLDMQDHGGLRP 200

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESC---LFISNAIVDMYAKCSDIIAAK 293
           +   L S++   A    L  G  IH   +    E     + I  A++DMYAKC  ++ A 
Sbjct: 201 NASTLVSLLPLLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYAC 260

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVG-LIYACSHV 352
            +F  M  ++ V+W+++I G     +  E   L+ +M+  G+     T V   +  C+ +
Sbjct: 261 RVFHGMPVRNDVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASL 320

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
             +  G +L  ++I   GI   L     LL + +++G ++EA      +  + D  ++ A
Sbjct: 321 ADLHMGTQL-HALIAKSGIHADLTASNSLLSMYAKAGLINEATMFFDEIAVK-DTISYGA 378

Query: 413 LLSACKHHRNTE 424
           LLS C  +   E
Sbjct: 379 LLSGCVQNGKAE 390



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 120/263 (45%), Gaps = 21/263 (7%)

Query: 165 SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALV---SGLVQSRNEIDA 221
           S ++K+   W   L  +   G+   A ++F++ P  +   + AL+   S L      ID 
Sbjct: 28  SYEVKDKKQWQQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDL 87

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
           + S +  R        P VL     AC+    L  G+ IH    A G  + LF+S A++D
Sbjct: 88  YRSMLRFRVAPNKYTFPFVLK----ACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALID 143

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA-LYDEMVSAGVKPNEV 340
           +Y +C+    A+++F +M  +DVV+W +++ G A HG     +A L D     G++PN  
Sbjct: 144 LYIRCARFGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNAS 203

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY-------TCLLDLLSRSGHLDE 393
           T V L+   +  G + +G     + I  Y +   L+         T LLD+ ++   L  
Sbjct: 204 TLVSLLPLLAQHGALFQG-----TSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVY 258

Query: 394 AENLIKAMPFEPDEPTWAALLSA 416
           A  +   MP   D  TW+AL+  
Sbjct: 259 ACRVFHGMPVRND-VTWSALIGG 280


>gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group]
          Length = 611

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/563 (36%), Positives = 318/563 (56%), Gaps = 40/563 (7%)

Query: 54  VQYAHHLLEEMPQRDHVSW-ASILTAYNQANL----PQKTISIFSTMLALDKLQPDHFVF 108
           + YA  + + +P    V W  ++L  Y +        ++   +F  M+  + + PD + F
Sbjct: 83  LAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEAARVFVRMME-EGVAPDTYTF 141

Query: 109 ASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL 168
            SL+KAC S  A   G+Q H   V +   + + V  +L++MYA+CG    AR +FD +  
Sbjct: 142 VSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDG 201

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228
           +  VS+ AM++A  RS    +A+ +F                                EM
Sbjct: 202 ECVVSYNAMITASVRSSLPGEALVLFR-------------------------------EM 230

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
           + +G+     + L S++ ACA    LELG+ IH  +  +  +S + ++ A++DMYAKC  
Sbjct: 231 QAKGLKPTS-VTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGS 289

Query: 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
           +  A  +F  M  +D  +W+ ++V  A HG   E +++++EM   G+KP++VTF+G++YA
Sbjct: 290 LEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYA 349

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           CSH G+V +G + F SM E YGI   ++HY C+ DLL+RSG L+ A   I  +P +P   
Sbjct: 350 CSHSGMVSEGLQYFDSMRE-YGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAI 408

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
            W  LLSAC  H + +MG RV   +L L       Y++ SN+ A+   W+ ++ VRKLMS
Sbjct: 409 LWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMS 468

Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH 528
              V K PG S IE     H F+AG+ SHP   E   ++ E+  ++K  GYVP+TS V H
Sbjct: 469 EKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFH 528

Query: 529 -DMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
            +M ++EK   L +HSE+LA+++GLL + PGT LR+VKNLRVC DCH + K++S +  R 
Sbjct: 529 VEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRR 588

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           I++RD  R+HHF+DG CSC D+W
Sbjct: 589 IILRDLNRFHHFEDGVCSCGDYW 611



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 159/367 (43%), Gaps = 77/367 (20%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L+ CA  +     +  H   +K G  ++  +  TLI+ Y +C  V+ A  + + M 
Sbjct: 141 FVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMD 200

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
               VS+ +++TA  +++LP + + +F  M A   L+P      S++ AC  LGA  LG+
Sbjct: 201 GECVVSYNAMITASVRSSLPGEALVLFREMQA-KGLKPTSVTLISVLSACALLGALELGR 259

Query: 126 QVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
            +H  ++     D  V V ++L+DMYAKCG   +A  VF  ++ ++  +W+ M+ AYA  
Sbjct: 260 WIHD-YIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANH 318

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G  ++A+ +FE                               EM+++G+   D +    +
Sbjct: 319 GYGREAISMFE-------------------------------EMKKQGMK-PDDVTFLGV 346

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + AC++  ++  G Q                                    F  MR   +
Sbjct: 347 LYACSHSGMVSEGLQ-----------------------------------YFDSMREYGI 371

Query: 305 VS----WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
           VS    +  +    A+ GQ E      DE+    +KP  + +  L+ AC+  G V  G++
Sbjct: 372 VSGIKHYGCVTDLLARSGQLERAYKFIDELP---IKPTAILWRTLLSACAGHGDVDMGKR 428

Query: 361 LFKSMIE 367
           +F+ ++E
Sbjct: 429 VFERILE 435


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/603 (33%), Positives = 339/603 (56%), Gaps = 35/603 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C   +     + +HA +IK        L   L+  YGKCD ++ A  +L+EMP+++ 
Sbjct: 59  LNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 118

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW ++++ Y+Q     + +++F+ M+  D  +P+ F FA+++ +C       LGKQ+H 
Sbjct: 119 VSWTAMISRYSQTGHSSEALTVFAEMMRSDG-KPNEFTFATVLTSCIRASGLGLGKQIHG 177

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V   +     V SSL+DMYAK                               +G+ K+
Sbjct: 178 LIVKWNYDSHIFVGSSLLDMYAK-------------------------------AGQIKE 206

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A EIFE  P R++   TA+++G  Q   + +A   F  +  EG+   + +  +S++ A +
Sbjct: 207 AREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMS-PNYVTYASLLTALS 265

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
             A+L+ GKQ H  V+         + N+++DMY+KC ++  A+ +F  M  +  +SW +
Sbjct: 266 GLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYARRLFDNMPERTAISWNA 325

Query: 310 IIVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE- 367
           ++VG ++HG   E L L+  M     VKP+ VT + ++  CSH  +   G  +F  M+  
Sbjct: 326 MLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGRMEDTGLNIFDGMVAG 385

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
           +YG  P  +HY C++D+L R+G +DEA   IK MP +P      +LL AC+ H + ++G 
Sbjct: 386 EYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGE 445

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
            V   L+ ++PE+  +Y++LSN+YASA  W  V+ VR +M    V KEPG S+I+  +  
Sbjct: 446 SVGRRLIEIEPENAGNYVILSNLYASAGRWADVNNVRAMMMQKAVTKEPGRSWIQHEQTL 505

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
           H F+A + +HP ++E+   + E+  +MK+ GYVPD S VL+D+++++KE+ L  HSE+LA
Sbjct: 506 HYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDLSCVLYDVDEEQKEKMLLGHSEKLA 565

Query: 548 VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
           + +GL+ +  G  +RV KNLR+C DCH   K+ S++ +RE+ +RD  R+H   DG CSC 
Sbjct: 566 LTFGLIATGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVDGICSCG 625

Query: 608 DFW 610
           D+W
Sbjct: 626 DYW 628



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 162/317 (51%), Gaps = 42/317 (13%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           + +L+ AC    A R G++VHA  + + +     +++ L+  Y KC    +AR V D + 
Sbjct: 55  YDALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMP 114

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            KN VSWTAM+S Y+++G   +A+ +F +                               
Sbjct: 115 EKNVVSWTAMISRYSQTGHSSEALTVFAEM------------------------------ 144

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           MR +G    +    ++++ +C   + L LGKQIHGL++   Y+S +F+ ++++DMYAK  
Sbjct: 145 MRSDGKP--NEFTFATVLTSCIRASGLGLGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAG 202

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            I  A++IF  +  +DVVS T+II G AQ G  EE L ++  + S G+ PN VT+  L+ 
Sbjct: 203 QIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRLHSEGMSPNYVTYASLLT 262

Query: 348 ACSHVGLVGKGRK----LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
           A S + L+  G++    + +  +  Y +   LQ+   L+D+ S+ G+L  A  L   MP 
Sbjct: 263 ALSGLALLDHGKQAHCHVLRRELPFYAV---LQN--SLIDMYSKCGNLSYARRLFDNMP- 316

Query: 404 EPDEPTWAALLSACKHH 420
           E    +W A+L     H
Sbjct: 317 ERTAISWNAMLVGYSKH 333



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/319 (21%), Positives = 139/319 (43%), Gaps = 49/319 (15%)

Query: 243 SIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           +++ AC +   L  G+++H  +I   Y    ++   ++  Y KC  +  A+ +   M  K
Sbjct: 57  ALLNACLDKRALRDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEK 116

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           +VVSWT++I   +Q G + E L ++ EM+ +  KPNE TF  ++ +C     +G G+++ 
Sbjct: 117 NVVSWTAMISRYSQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQI- 175

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP-------------------- 402
             +I  +     +   + LLD+ +++G + EA  + + +P                    
Sbjct: 176 HGLIVKWNYDSHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLD 235

Query: 403 --------------FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
                           P+  T+A+LL+A       + G +   H+  L+ E P   +L +
Sbjct: 236 EEALEMFHRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHV--LRRELPFYAVLQN 293

Query: 449 NVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLT 508
           ++    +   ++S  R+L   M     P  + I +    +    G + H L  E+ EL  
Sbjct: 294 SLIDMYSKCGNLSYARRLFDNM-----PERTAISW----NAMLVGYSKHGLGREVLELFR 344

Query: 509 ELDAEMKRRGYVPDTSSVL 527
            +  E + +   PD  ++L
Sbjct: 345 LMRDEKRVK---PDAVTLL 360


>gi|302782465|ref|XP_002973006.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
 gi|300159607|gb|EFJ26227.1| hypothetical protein SELMODRAFT_98207 [Selaginella moellendorffii]
          Length = 698

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 229/637 (35%), Positives = 354/637 (55%), Gaps = 41/637 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CAR +       +H +I+K G+ Q   L N L+  Y KC  +  A  + + +  RD 
Sbjct: 67  LAACARLKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQVFDRITHRDV 126

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKL---------------------------- 101
           VSW ++++A  +A   +  + I+  M++ D L                            
Sbjct: 127 VSWNAMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREALELYREMILS 186

Query: 102 -QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
            +P+    A+++ AC  LG    G  V    + S    D VV ++LV++YA+ G    AR
Sbjct: 187 VRPNASTLATVLAACTRLGDLSSGALVRDGAIQSGLDRDAVVGTTLVNLYARFGDVIAAR 246

Query: 161 AV-FDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
            V FDS+K +  VSW AM++A+A++ R  +A ++F + P +++  W A+++G  Q+    
Sbjct: 247 EVLFDSMKDRTVVSWNAMVTAFAQNARVDEAEKLFREMPDKSVISWNAMIAGFGQNGRPK 306

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI-HGLVIALGYESCLFISNA 278
            A   F  M  EG+     +   S++ ACAN     LG+ I  G+  AL  +  + ++N+
Sbjct: 307 QALELFRRMDLEGLQ-PSRMTYCSVLDACANLTASSLGRFICDGMDEALAKD--ISVANS 363

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           I +MY KC     A+  F  M  +DVVSWT+II   +Q+G + E L ++  MV AGV+PN
Sbjct: 364 ICNMYGKCGLPELARQTFLEMTYRDVVSWTAIIAAYSQNGYSSEALDIFRIMVQAGVEPN 423

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIED--YGITPSLQHYTCLLDLLSRSGHLDEAEN 396
            +T +  + ACSH  L  +G  +F S++    YG+T +  H+ C +DLL R+G+L +AE 
Sbjct: 424 GITLINTLSACSHGALFDEGSDIFSSLVSGDYYGVTANESHFLCAIDLLGRAGYLKDAET 483

Query: 397 LIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP---EDPSSYILLSNVYAS 453
           LI  MPF+     W +LLSAC+  R+ +   RVANHL  L     +DP+ Y++LSN+YAS
Sbjct: 484 LITKMPFKAGAVAWTSLLSACRTFRDLKRAGRVANHLFELDESSIKDPAPYVMLSNIYAS 543

Query: 454 AAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAE 513
           A       K+R  + +   KK PG S I     ++ FY+ + +HP +D+ +  L  L  +
Sbjct: 544 AGDRAAEMKLRDQIRIKCRKKLPGKSTITIKGQTNEFYSLDETHPRRDDAYNELRRLFQK 603

Query: 514 MKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDC 573
           MK  GYVPDT   + +ME++E E+ L +HSE+LA+A+G+L + P   L +VKNLRVC DC
Sbjct: 604 MKEAGYVPDTR--IAEMEEEETEQSLSYHSEKLALAFGVLNTPPEASLCIVKNLRVCSDC 661

Query: 574 HIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           H V+K +S+   R+I VRDATR+HHF++G CSC D W
Sbjct: 662 HNVIKFLSKHLNRKIAVRDATRFHHFENGFCSCRDCW 698



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/455 (25%), Positives = 216/455 (47%), Gaps = 71/455 (15%)

Query: 48  YGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTML-ALDKLQPDHF 106
           Y  C  ++ A  + + MP R+  SWA I++AY  A   Q+ + ++ T++ +  ++Q D F
Sbjct: 2   YRDCGRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRTLVRSSTEIQADAF 61

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
           +F+S++ AC  L     G ++H   V      D  ++++LV MYAKCG  + A+ VFD I
Sbjct: 62  IFSSVLAACARLKCLEQGLEIHERIVKRGVKQDVGLQNALVTMYAKCGRIDRAKQVFDRI 121

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
             ++ VSW AM+SA A +G  + A++I+++    ++  W+ ++S    + ++ +A    +
Sbjct: 122 THRDVVSWNAMVSANAEAGHLEVALKIYQEMVSADVLCWSTMISAEAMAGHDREA----L 177

Query: 227 EMRREGVDIVDP--LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284
           E+ RE +  V P    L++++ AC     L  G  +    I  G +    +   +V++YA
Sbjct: 178 ELYREMILSVRPNASTLATVLAACTRLGDLSSGALVRDGAIQSGLDRDAVVGTTLVNLYA 237

Query: 285 KCSDIIAAKDI--------------------------------FGRMRRKDVVSWTSIIV 312
           +  D+IAA+++                                F  M  K V+SW ++I 
Sbjct: 238 RFGDVIAAREVLFDSMKDRTVVSWNAMVTAFAQNARVDEAEKLFREMPDKSVISWNAMIA 297

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE----D 368
           G  Q+G+ ++ L L+  M   G++P+ +T+  ++ AC+++     GR +   M E    D
Sbjct: 298 GFGQNGRPKQALELFRRMDLEGLQPSRMTYCSVLDACANLTASSLGRFICDGMDEALAKD 357

Query: 369 YGITPSLQH-------------------------YTCLLDLLSRSGHLDEAENLIKAM-- 401
             +  S+ +                         +T ++   S++G+  EA ++ + M  
Sbjct: 358 ISVANSICNMYGKCGLPELARQTFLEMTYRDVVSWTAIIAAYSQNGYSSEALDIFRIMVQ 417

Query: 402 -PFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS 435
              EP+  T    LSAC H    + G+ + + L+S
Sbjct: 418 AGVEPNGITLINTLSACSHGALFDEGSDIFSSLVS 452



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 138/302 (45%), Gaps = 69/302 (22%)

Query: 149 MYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTAL 208
           MY  CG   +ARAVFDS+ L+N  SW  ++SAY  +G++++A+ ++              
Sbjct: 1   MYRDCGRLEDARAVFDSMPLRNEFSWAIIISAYVGAGKEQEALCLYRT------------ 48

Query: 209 VSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG 268
              LV+S  EI A               D  + SS++ ACA    LE G +IH  ++  G
Sbjct: 49  ---LVRSSTEIQA---------------DAFIFSSVLAACARLKCLEQGLEIHERIVKRG 90

Query: 269 YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYD 328
            +  + + NA+V MYAKC  I  AK +F R+  +DVVSW +++   A+ G  E  L +Y 
Sbjct: 91  VKQDVGLQNALVTMYAKCGRIDRAKQVFDRITHRDVVSWNAMVSANAEAGHLEVALKIYQ 150

Query: 329 EMVSA------------------------------GVKPNEVTFVGLIYACSHVGLVGKG 358
           EMVSA                               V+PN  T   ++ AC+ +G +  G
Sbjct: 151 EMVSADVLCWSTMISAEAMAGHDREALELYREMILSVRPNASTLATVLAACTRLGDLSSG 210

Query: 359 RKLFKSMIEDYGITPSLQH----YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
                +++ D  I   L       T L++L +R G +  A  ++     +    +W A++
Sbjct: 211 -----ALVRDGAIQSGLDRDAVVGTTLVNLYARFGDVIAAREVLFDSMKDRTVVSWNAMV 265

Query: 415 SA 416
           +A
Sbjct: 266 TA 267


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/604 (35%), Positives = 333/604 (55%), Gaps = 35/604 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGP---LPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L + A+H       ++HA  ++  L Q      +   L+D Y KC  + YA  +   M  
Sbjct: 208 LPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTV 267

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           R+ V+W++++  +   +   +  ++F  ML            AS ++ C SL   R+G Q
Sbjct: 268 RNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQ 327

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +HA    S    D    +SL+ MYAK                               +G 
Sbjct: 328 LHALLAKSGIHADLTAGNSLLSMYAK-------------------------------AGL 356

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
             +A  +F++  +++   + AL+SG VQ+    +AF  F +M+   V   D   + S++ 
Sbjct: 357 INEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQACNVQ-PDIATMVSLIP 415

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           AC++ A L+ G+  HG VI  G      I N+++DMYAKC  I  ++ +F +M  +D+VS
Sbjct: 416 ACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVS 475

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W ++I G   HG  +E   L+  M + G +P++VTF+ LI ACSH GLV +G+  F +M 
Sbjct: 476 WNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACSHSGLVTEGKHWFDTMT 535

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             YGI P ++HY C++DLL+R G LDEA   I++MP + D   W ALL AC+ H+N ++G
Sbjct: 536 HKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVWGALLGACRIHKNIDLG 595

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
            +V+  +  L PE   +++LLSN++++A  +   ++VR +  V   KK PG S+IE    
Sbjct: 596 KQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKVKGFKKSPGCSWIEINGS 655

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            H F  G+ SHP   +I+  L  +  ++K+ GY  DTS VL D+E++EKE+ L +HSE+L
Sbjct: 656 LHAFVGGDQSHPCSPDIYHELDNILIDIKKLGYQADTSFVLQDLEEEEKEKALLYHSEKL 715

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+A+G+L       + V KNLRVCGDCH  +K ++ +  R I+VRDA R+HHFK+G+CSC
Sbjct: 716 AIAFGVLSLNEDKTIFVTKNLRVCGDCHTAIKYMTLVRNRTIIVRDANRFHHFKNGQCSC 775

Query: 607 NDFW 610
            DFW
Sbjct: 776 GDFW 779



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 115/448 (25%), Positives = 196/448 (43%), Gaps = 71/448 (15%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+        +T+HA    +GLH    +   LID Y +C     A ++  +MP RD 
Sbjct: 106 LKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDV 165

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W ++L  Y    +    I+    M     L+P+     SL+      GA   G  VHA
Sbjct: 166 VAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHGALFQGTSVHA 225

Query: 130 CFVLSPFCDDD----VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            + L  + D +    ++ ++L+DMYAKC     A  VF  + ++N V+W+A++  +    
Sbjct: 226 -YCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWSALIGGFVLCD 284

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
           R  +A  +F+                               +M  EG+  +    ++S +
Sbjct: 285 RMTEAFNLFK-------------------------------DMLVEGMCFLSATSVASAL 313

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
             CA+ A L +G Q+H L+   G  + L   N+++ MYAK   I  A  +F  +  KD +
Sbjct: 314 RVCASLADLRMGTQLHALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTI 373

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           S+ +++ G  Q+G+AEE   ++ +M +  V+P+  T V LI ACSH+  +  GR    S+
Sbjct: 374 SYGALLSGYVQNGKAEEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSV 433

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP----------------------- 402
           I   G+         L+D+ ++ G +D +  +   MP                       
Sbjct: 434 IIR-GLALETSICNSLIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEA 492

Query: 403 -----------FEPDEPTWAALLSACKH 419
                      FEPD+ T+  L++AC H
Sbjct: 493 TTLFLSMKNQGFEPDDVTFICLIAACSH 520



 Score = 99.0 bits (245), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 158/364 (43%), Gaps = 38/364 (10%)

Query: 57  AHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACG 116
           A  + + +P  D  ++ +++ AY+        I ++ +ML   ++ P+ + F  ++KAC 
Sbjct: 52  ARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDLYRSMLYF-RVPPNKYTFPFVLKACS 110

Query: 117 SLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTA 176
           +L     G+ +HA         D  V ++L+D+Y +C     A  VF  + +++ V+W A
Sbjct: 111 ALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAANVFAKMPMRDVVAWNA 170

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
           ML+ YA  G    A+                                  ++M+  G    
Sbjct: 171 MLAGYANHGMYHHAIA-------------------------------HLLDMQDRGGLRP 199

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIAL---GYESCLFISNAIVDMYAKCSDIIAAK 293
           +   L S++   A    L  G  +H   +       E  + I  A++DMYAKC  ++ A 
Sbjct: 200 NASTLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYAC 259

Query: 294 DIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVG-LIYACSHV 352
            +F  M  ++ V+W+++I G     +  E   L+ +M+  G+     T V   +  C+ +
Sbjct: 260 RVFHGMTVRNEVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASL 319

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
             +  G +L  +++   GI   L     LL + +++G ++EA  L   +  + D  ++ A
Sbjct: 320 ADLRMGTQL-HALLAKSGIHADLTAGNSLLSMYAKAGLINEATMLFDEIAIK-DTISYGA 377

Query: 413 LLSA 416
           LLS 
Sbjct: 378 LLSG 381



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 119/258 (46%), Gaps = 11/258 (4%)

Query: 165 SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS---RNEIDA 221
           S ++K++  W   L  +   G+   A ++F++ P  +   + AL+            ID 
Sbjct: 27  SHEVKDNKEWQQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAYSWRGPFHAAIDL 86

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
           + S +  R        P VL     AC+  A L  G+ IH    A+G  + LF+S A++D
Sbjct: 87  YRSMLYFRVPPNKYTFPFVLK----ACSALADLCAGRTIHAHAAAVGLHTDLFVSTALID 142

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA-LYDEMVSAGVKPNEV 340
           +Y +C+    A ++F +M  +DVV+W +++ G A HG     +A L D     G++PN  
Sbjct: 143 LYIRCARFGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNAS 202

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY--TCLLDLLSRSGHLDEAENLI 398
           T V L+   +  G + +G  +    +  Y      Q    T LLD+ ++  HL  A  + 
Sbjct: 203 TLVSLLPLLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVF 262

Query: 399 KAMPFEPDEPTWAALLSA 416
             M    +E TW+AL+  
Sbjct: 263 HGMTVR-NEVTWSALIGG 279


>gi|224140235|ref|XP_002323489.1| predicted protein [Populus trichocarpa]
 gi|222868119|gb|EEF05250.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/635 (32%), Positives = 336/635 (52%), Gaps = 65/635 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CAR    +  + +HA  I++GL     + N +I  Y +C  + +   L E MP RD 
Sbjct: 312 LTACARCHARIQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLNHVAALFERMPVRDI 371

Query: 70  VSWASILTAYNQANLPQKTISIFSTM------------------------------LALD 99
           ++W  ++TAY +  L    + +F+ M                              +  +
Sbjct: 372 ITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYNALLTGFCKNNEGLKALNLFVRMVQE 431

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
             +   F    ++ ACG L    + +Q+H   +   F  +  ++++L+DM +KCG  ++A
Sbjct: 432 GAELTDFTLTGVINACGLLLKLEISRQIHGFIIKFGFRSNACIEAALIDMCSKCGRMDDA 491

Query: 160 RAVFDSIKLK--NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
             +F S+     NS+  T+M+  YAR+G  ++A+ +F +                     
Sbjct: 492 DRMFQSLSTDGGNSIIQTSMICGYARNGLPEEAICLFYRC-------------------- 531

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
                      + EG  ++D +  +SI+G C      E+GKQIH   +  G+ + L + N
Sbjct: 532 -----------QSEGTMVLDEVAFTSILGVCGTLGFHEVGKQIHCQALKTGFHAELGVGN 580

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           +I+ MY+KC +I  A   F  M   DVVSW  +I G   H Q +E LA++  M  AG+KP
Sbjct: 581 SIISMYSKCYNIDDAIKAFNTMPGHDVVSWNGLIAGQLLHRQGDEALAIWSSMEKAGIKP 640

Query: 338 NEVTFVGLI--YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
           + +TFV ++  Y  +   L+ + R LF SM   + + P+ +HY  L+ +L   G L+EAE
Sbjct: 641 DAITFVLIVSAYKFTSSNLLDECRSLFLSMKMIHDLEPTSEHYASLVGVLGYWGLLEEAE 700

Query: 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
            LI  MPF+P+   W ALL  C+ H NT +G RVA H++ ++P DPS+Y+L+SN+YA++ 
Sbjct: 701 ELINKMPFDPEVSVWRALLDGCRLHANTSIGKRVAKHIIGMEPRDPSTYVLVSNLYAASG 760

Query: 456 MWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK 515
            W     VR+ M    ++K P  S++   K  H FYA + SHP  ++I+  L  L  +  
Sbjct: 761 RWHCSEMVRENMRDRGLRKHPCRSWVIIKKQLHTFYARDKSHPQSNDIYSGLDILILKCL 820

Query: 516 RRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHI 575
           + GY PD S VL ++E+++K+  LF+HS +LA  YGLLK+ PG  +RVVKN+ +C DCH 
Sbjct: 821 KAGYEPDMSFVLQEVEEQQKKDFLFYHSAKLAATYGLLKTRPGEPIRVVKNILLCRDCHT 880

Query: 576 VMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +K  + +T+REI+ RDA+ +H F +G+CSC  +W
Sbjct: 881 FLKYATVVTQREIIFRDASGFHCFSNGQCSCKGYW 915



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 116/432 (26%), Positives = 221/432 (51%), Gaps = 9/432 (2%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA  IKLG  Q   + N LI  YGKC  + +A HL +EMPQRD  SW +++++  +   
Sbjct: 225 VHALAIKLGYSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMISSLVKGLS 284

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            +K + +F  +      + D F  ++L+ AC    A   G+++HA  +     ++  V +
Sbjct: 285 YEKALELFRVLNQNKGFKADQFTLSTLLTACARCHARIQGREIHAYAIRIGLENNLSVSN 344

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           +++  Y +CG  N+  A+F+ + +++ ++WT M++AY   G    A+++F + P +N   
Sbjct: 345 AIIGFYTRCGSLNHVAALFERMPVRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVS 404

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           + AL++G  ++   + A   F+ M +EG ++ D   L+ ++ AC     LE+ +QIHG +
Sbjct: 405 YNALLTGFCKNNEGLKALNLFVRMVQEGAELTD-FTLTGVINACGLLLKLEISRQIHGFI 463

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK--DVVSWTSIIVGTAQHGQAEE 322
           I  G+ S   I  A++DM +KC  +  A  +F  +     + +  TS+I G A++G  EE
Sbjct: 464 IKFGFRSNACIEAALIDMCSKCGRMDDADRMFQSLSTDGGNSIIQTSMICGYARNGLPEE 523

Query: 323 TLALYDEMVSAGVKP-NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
            + L+    S G    +EV F  ++  C  +G    G+++    ++  G    L     +
Sbjct: 524 AICLFYRCQSEGTMVLDEVAFTSILGVCGTLGFHEVGKQIHCQALKT-GFHAELGVGNSI 582

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL--LSLKPE 439
           + + S+  ++D+A      MP   D  +W  L++    HR  +    + + +    +KP 
Sbjct: 583 ISMYSKCYNIDDAIKAFNTMPGH-DVVSWNGLIAGQLLHRQGDEALAIWSSMEKAGIKP- 640

Query: 440 DPSSYILLSNVY 451
           D  +++L+ + Y
Sbjct: 641 DAITFVLIVSAY 652



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/432 (23%), Positives = 200/432 (46%), Gaps = 66/432 (15%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           +++    + LR+  ++      + LHA I+KLG   +  L N +I AY K  LV  A+ +
Sbjct: 102 IEVDDLFNLLRLSVKYTDIDLARALHASILKLGEDTH--LGNAVIAAYIKLGLVVDAYEV 159

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
              M   D VS++++++++++ N   + I +F  M  +  ++P+ + F +++ AC     
Sbjct: 160 FMGMSTPDVVSYSALISSFSKLNRETEAIQLFFRM-RISGIEPNEYSFVAILTACIRSLE 218

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
             +G QVHA  +   +     V ++L+ +Y KCG  ++A  +FD +  ++  SW  M+S+
Sbjct: 219 LEMGLQVHALAIKLGYSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMISS 278

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
             +    + A+E+F                   +  N+   F +            D   
Sbjct: 279 LVKGLSYEKALELF-------------------RVLNQNKGFKA------------DQFT 307

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS------------- 287
           LS+++ ACA       G++IH   I +G E+ L +SNAI+  Y +C              
Sbjct: 308 LSTLLTACARCHARIQGREIHAYAIRIGLENNLSVSNAIIGFYTRCGSLNHVAALFERMP 367

Query: 288 --DIIA----------------AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDE 329
             DII                 A D+F +M  K+ VS+ +++ G  ++ +  + L L+  
Sbjct: 368 VRDIITWTEMITAYMEFGLVDLAVDMFNKMPEKNSVSYNALLTGFCKNNEGLKALNLFVR 427

Query: 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389
           MV  G +  + T  G+I AC  +  +   R++   +I+ +G   +      L+D+ S+ G
Sbjct: 428 MVQEGAELTDFTLTGVINACGLLLKLEISRQIHGFIIK-FGFRSNACIEAALIDMCSKCG 486

Query: 390 HLDEAENLIKAM 401
            +D+A+ + +++
Sbjct: 487 RMDDADRMFQSL 498



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 121/243 (49%), Gaps = 4/243 (1%)

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
            A+++AY + G   DA E+F      ++  ++AL+S   +   E +A   F  MR  G++
Sbjct: 141 NAVIAAYIKLGLVVDAYEVFMGMSTPDVVSYSALISSFSKLNRETEAIQLFFRMRISGIE 200

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
             +     +I+ AC     LE+G Q+H L I LGY   +F++NA++ +Y KC  +  A  
Sbjct: 201 -PNEYSFVAILTACIRSLELEMGLQVHALAIKLGYSQLVFVANALIGLYGKCGCLDHAIH 259

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEM-VSAGVKPNEVTFVGLIYACSHVG 353
           +F  M ++D+ SW ++I    +    E+ L L+  +  + G K ++ T   L+ AC+   
Sbjct: 260 LFDEMPQRDIASWNTMISSLVKGLSYEKALELFRVLNQNKGFKADQFTLSTLLTACARCH 319

Query: 354 LVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAAL 413
              +GR++    I   G+  +L     ++   +R G L+    L + MP   D  TW  +
Sbjct: 320 ARIQGREIHAYAIR-IGLENNLSVSNAIIGFYTRCGSLNHVAALFERMPVR-DIITWTEM 377

Query: 414 LSA 416
           ++A
Sbjct: 378 ITA 380



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 86/163 (52%), Gaps = 4/163 (2%)

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           ++L + +H  ++ LG ++ L   NA++  Y K   ++ A ++F  M   DVVS++++I  
Sbjct: 120 IDLARALHASILKLGEDTHL--GNAVIAAYIKLGLVVDAYEVFMGMSTPDVVSYSALISS 177

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
            ++  +  E + L+  M  +G++PNE +FV ++ AC     +  G ++    I+  G + 
Sbjct: 178 FSKLNRETEAIQLFFRMRISGIEPNEYSFVAILTACIRSLELEMGLQVHALAIK-LGYSQ 236

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            +     L+ L  + G LD A +L   MP + D  +W  ++S+
Sbjct: 237 LVFVANALIGLYGKCGCLDHAIHLFDEMP-QRDIASWNTMISS 278


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/604 (35%), Positives = 325/604 (53%), Gaps = 33/604 (5%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L+ L  C      L+++ LH   ++        + N  I AY KC  + +A H+   M  
Sbjct: 420 LNLLPACLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNT 479

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           +   SW +++  + Q   P K +  +  M  L  L PD F   SL+ ACG LG  + GK+
Sbjct: 480 KSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGIL-PDDFSIVSLLLACGRLGLLQYGKE 538

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +H   + +    +  V  SL+ +Y  C  P   R  F+ +  KNSV              
Sbjct: 539 IHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVC------------- 585

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
                             W A++SG  Q+    +A   F +M  +G++  D + ++SI+G
Sbjct: 586 ------------------WNAMLSGYSQNELPNEALSLFRQMLSDGLE-PDEIAIASILG 626

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           AC+  + L LGK++H   +        F++ +++DMYAK   +  ++ IF R+  K+V S
Sbjct: 627 ACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVAS 686

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W  +I G   HGQ  + + L+++M  +  +P+  TF+G++ AC H GLV +G      M 
Sbjct: 687 WNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCHAGLVSEGLNYLAQMQ 746

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             Y + P L+HY C++D+L R+G L+EA N I  MP EPD   W++LLS+   + + EMG
Sbjct: 747 TLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWSSLLSSSITYVDLEMG 806

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
            + A  LL+L+     SYILLSN+YA+A  W  V  VR+ M  + ++K+ G S+IE    
Sbjct: 807 EKFAEKLLALEANKADSYILLSNLYATAGKWDVVRMVRQKMKDLSLQKDVGCSWIELRGK 866

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            + F AGE S+P  DEI ++   L+ ++   GY PD S VLH++E+ EK + L  HSE++
Sbjct: 867 VYSFIAGENSNPSSDEIRKMWNRLEKQIVEIGYTPDCSCVLHELEEVEKRKILKGHSEKV 926

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+ +G L +  GT LR+ KNLR+C DCH   K IS+  KREIV+RD  R+HHFK G CSC
Sbjct: 927 AICFGFLNTKEGTTLRISKNLRICRDCHNAAKYISKAAKREIVIRDNKRFHHFKKGICSC 986

Query: 607 NDFW 610
            D+W
Sbjct: 987 GDYW 990



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 134/542 (24%), Positives = 243/542 (44%), Gaps = 85/542 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K++H   +K+GL     + N +I  YGKC  +  A  L ++MP+++ +SW S++  +++ 
Sbjct: 230 KSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSEN 289

Query: 83  NLPQKTISIFSTML-ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
               +    F ++L + D L PD     +L+  C   G   +G  +H   V      + +
Sbjct: 290 GFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELM 349

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V ++L+DMY+KCG  + A  +F  I+ K+ VSW +M+ AY+R G   +  ++  +     
Sbjct: 350 VCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRK----- 404

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
             +W                      M  E +++ +  +L +++ AC   + L   + +H
Sbjct: 405 --MW----------------------MEEELMEVNEVTIL-NLLPACLEESELLSLRALH 439

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           G  +   ++    I+NA +  YAKC  ++ A+ +F  M  K V SW ++I G AQ+G   
Sbjct: 440 GYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPI 499

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED------------- 368
           + L  Y EM   G+ P++ + V L+ AC  +GL+  G+++   ++ +             
Sbjct: 500 KALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLL 559

Query: 369 ----------YGIT-------PSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEP 408
                     YG T        +   +  +L   S++   +EA +L + M     EPDE 
Sbjct: 560 SLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEI 619

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKP---EDPSSYILLSNVYASAAMWQHVSKVRK 465
             A++L AC       +G  V  H  +LK    ED      L ++YA +    H  ++  
Sbjct: 620 AIASILGACSQLSALGLGKEV--HCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFN 677

Query: 466 LMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSS 525
            ++  EV     ++ +  G G H    G+ +  +  E+FE       +MKR    PD  +
Sbjct: 678 RLNGKEV---ASWNVMITGFGVH----GQGNKAV--ELFE-------DMKRSDKQPDRFT 721

Query: 526 VL 527
            L
Sbjct: 722 FL 723



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 189/417 (45%), Gaps = 45/417 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VC+          +H   +KLGL     + N LID Y KC  +  A  L  ++  +  
Sbjct: 320 LPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSV 379

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKL-QPDHFVFASLVKACGSLGATRLGKQVH 128
           VSW S++ AY++     +T  +   M   ++L + +     +L+ AC         + +H
Sbjct: 380 VSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALH 439

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              +   F   +++ ++ +  YAKCG    A  VF  +  K+  S               
Sbjct: 440 GYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSS--------------- 484

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
                           W A++ G  Q+ + I A   + EM R G+ + D   + S++ AC
Sbjct: 485 ----------------WNAVIGGHAQNGDPIKALDFYFEMTRLGI-LPDDFSIVSLLLAC 527

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
               +L+ GK+IHG V+  G E   F++ +++ +Y  CS     +  F RM  K+ V W 
Sbjct: 528 GRLGLLQYGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWN 587

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK-----LFK 363
           +++ G +Q+    E L+L+ +M+S G++P+E+    ++ ACS +  +G G++     L  
Sbjct: 588 AMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKN 647

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           S++ED  +  S      L+D+ ++SG L  ++ +   +    +  +W  +++    H
Sbjct: 648 SLMEDNFVACS------LMDMYAKSGFLGHSQRIFNRLN-GKEVASWNVMITGFGVH 697



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 148/313 (47%), Gaps = 34/313 (10%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   LI  Y  C     +  + + +  ++   W ++++ Y +  L  + I  F  ++++ 
Sbjct: 145 LNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVT 204

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           + QPD+F F  L+KAC       LGK VH   V      D  V ++++ +Y KCG  +  
Sbjct: 205 EFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLD-- 262

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
                                        +A+E+F++ P +NL  W +L+ G  ++   +
Sbjct: 263 -----------------------------EAVELFDKMPEQNLISWNSLIRGFSENGFWL 293

Query: 220 DAFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
           +A+ +F  +   G  ++ D   + +++  C+    +++G  IHG+ + LG    L + NA
Sbjct: 294 EAYRAFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNA 353

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDE--MVSAGVK 336
           ++DMY+KC  +  A  +F ++  K VVSW S+I   ++ G   ET  L  +  M    ++
Sbjct: 354 LIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELME 413

Query: 337 PNEVTFVGLIYAC 349
            NEVT + L+ AC
Sbjct: 414 VNEVTILNLLPAC 426



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 146/311 (46%), Gaps = 40/311 (12%)

Query: 111 LVKACGSLGATRLGKQVHACF-VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           L++ CG      +G+++     V S F  D V+ + L+ MY+ CG P  +R VFD  +L 
Sbjct: 113 LLQKCGQYKNVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFD--RLL 170

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI--DAFYSFIE 227
           N                             +NLF W ALVSG V  RNE+  +A ++F+E
Sbjct: 171 N-----------------------------KNLFQWNALVSGYV--RNELYDEAIHTFLE 199

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           +        D      ++ AC     + LGK +HG+ + +G    LF+ NA++ +Y KC 
Sbjct: 200 LISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCG 259

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA--GVKPNEVTFVGL 345
            +  A ++F +M  ++++SW S+I G +++G   E    +  ++ +  G+ P+  T V L
Sbjct: 260 FLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTL 319

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP 405
           +  CS  G V  G  +   M    G+   L     L+D+ S+ G L EA  L + +    
Sbjct: 320 LPVCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIE-NK 377

Query: 406 DEPTWAALLSA 416
              +W +++ A
Sbjct: 378 SVVSWNSMIGA 388


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 208/504 (41%), Positives = 298/504 (59%), Gaps = 10/504 (1%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           + + LID Y KC  V  A  +   M +R+ V+W S++T Y Q     + + +F  M+   
Sbjct: 184 MGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMD-S 242

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFV-LSPFCDDDVVKSSLVDMYAKCGLPNN 158
            L+PD    AS+V AC SL A + G Q+HA  V  + F DD V+ ++LVDMYAKC   N 
Sbjct: 243 GLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNE 302

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           AR VFD + ++N VS T+M+S YAR+   K A  +F +   RN+  W AL++G  Q+   
Sbjct: 303 ARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGEN 362

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYE------SC 272
            +A   F  ++RE +         +++ ACAN A L LG+Q H  V+  G+E      S 
Sbjct: 363 EEALRLFRLLKRESI-WPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESD 421

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
           +F+ N+++DMY KC  I     +F +M+ +D VSW +IIVG AQ+G   E L ++ +M+ 
Sbjct: 422 IFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLV 481

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
            G KP+ VT +G++ ACSH GLV +GR  F SM E++G+ P   HYTC++DLL R+G L+
Sbjct: 482 CGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSM-EEHGLIPLKDHYTCMVDLLGRAGCLN 540

Query: 393 EAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           EA+NLI+AMP  PD   W +LL+ACK H N EMG   A  LL + P +   Y+LLSN+YA
Sbjct: 541 EAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYA 600

Query: 453 SAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDA 512
               W  V +VRKLM    V K+PG S+IE     H+F   + SHP + +I+ +L  L  
Sbjct: 601 ELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVESRVHVFLVKDKSHPHRKQIYSVLKMLTE 660

Query: 513 EMKRRGYVPDTSSVLHDMEQKEKE 536
           +MKR GY+PD +      EQ + E
Sbjct: 661 QMKRVGYIPDANDFEAYDEQSKSE 684



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 123/478 (25%), Positives = 206/478 (43%), Gaps = 100/478 (20%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S +   L  C R + A   + +HA+I+         + N LID YGKCD +  A  L + 
Sbjct: 16  SPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDCLDDARKLFDR 75

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL----------QPDHF------- 106
           MPQR+  +W S+++   ++    +   +F +M   D+           Q D F       
Sbjct: 76  MPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYF 135

Query: 107 -------------VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC 153
                         F S + AC  L    +G QVHA    S +  D  + S+L+DMY+KC
Sbjct: 136 VKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKC 195

Query: 154 GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLV 213
           G    A  VF  +  +N V+W ++++ Y ++G   +A+E+                    
Sbjct: 196 GSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEV-------------------- 235

Query: 214 QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG-YESC 272
                      F+ M   G++  D + L+S+V ACA+   L+ G QIH  V+    +   
Sbjct: 236 -----------FVRMMDSGLE-PDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDD 283

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRMR-------------------------------R 301
           L + NA+VDMYAKCS +  A+ +F RM                                +
Sbjct: 284 LVLGNALVDMYAKCSKVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQ 343

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK- 360
           ++VVSW ++I G  Q+G+ EE L L+  +    + P   TF  L+ AC+++  +  GR+ 
Sbjct: 344 RNVVSWNALIAGYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQA 403

Query: 361 ---LFKSMIE-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
              + K   E   G    +     L+D+  + G +++   + + M  E D  +W A++
Sbjct: 404 HTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMK-ERDCVSWNAII 460



 Score =  162 bits (410), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 165/306 (53%), Gaps = 1/306 (0%)

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
           L  D   P+   FA L+ +C    + R  + VHA  +++ F  +  +++ L+D+Y KC  
Sbjct: 6   LVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVYGKCDC 65

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
            ++AR +FD +  +N+ +W +++S   +SG   +A  +F   P  +   W ++VSG  Q 
Sbjct: 66  LDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQH 125

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI 275
               ++   F++M RE   +++     S + ACA    L +G Q+H LV    Y + +++
Sbjct: 126 DRFEESLEYFVKMHREDF-LLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYM 184

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
            +A++DMY+KC  +  A+++F  M  +++V+W S+I    Q+G A E L ++  M+ +G+
Sbjct: 185 GSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGL 244

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
           +P+EVT   ++ AC+ +  + +G ++   +++       L     L+D+ ++   ++EA 
Sbjct: 245 EPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEAR 304

Query: 396 NLIKAM 401
            +   M
Sbjct: 305 RVFDRM 310


>gi|215768832|dbj|BAH01061.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 842

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/600 (33%), Positives = 342/600 (57%), Gaps = 44/600 (7%)

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
           D ++ A  +    P+ +  +W ++L+  ++    ++ + + ++ML    L+PD    +SL
Sbjct: 240 DALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLK-QGLRPDATTVSSL 298

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKN 170
           +K+  + G  R G ++H CF L    + DV   ++LVDMYAKCG  + A+ V D+++ +N
Sbjct: 299 LKSVANTGLLRHGMEIH-CFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRN 357

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFE----------------------------------- 195
             +W ++++ YA +GR   A+E+ E                                   
Sbjct: 358 LTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLR 417

Query: 196 ----QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
                    N+  WT+L+SG   +    D+FY   EM+++GV     + +S ++ ACA  
Sbjct: 418 QIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQ-PSLVTMSVLLRACAGL 476

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
           A+ + GK++H   +   Y+  + +S A++DMY+K   +++AK IF  +++K++V   +++
Sbjct: 477 ALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAML 536

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G A HGQ  E + L+ +M ++G+KP+ +TF  L+ AC  +GLV +G + F SM   YG+
Sbjct: 537 TGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGV 596

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
            P+ ++Y C++DLL+R G+LDEA + I+  P +P    W ALL+ C  H N  +    A 
Sbjct: 597 KPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAAR 656

Query: 432 HLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFY 491
           +L  L+P + ++Y+L+ N+Y    M+     ++  M    V   PG+S+I+  +G H+F 
Sbjct: 657 NLFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFE 716

Query: 492 AGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYG 551
                HP   EI+E L  L  ++K+ GYVPDTS + ++++++EKE+ L  H+E+LA+ YG
Sbjct: 717 VDGKPHPETAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYG 776

Query: 552 LLKSVPGTV-LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           L++S      +RV+KN R+C DCH V K IS +  R+I++RDA R+HHF DGKCSCND+W
Sbjct: 777 LIRSDASRAPVRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 836



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 184/403 (45%), Gaps = 13/403 (3%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQ 81
           LH+  ++ GL +   +   L+D   +         LL E  +   +D V W   +    +
Sbjct: 74  LHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAE 133

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
           A    + I++F  M A   +  D +  A ++ ACG  GA R G+ VHA  +        +
Sbjct: 134 AEEWDEAIAVFREMQA-RGVPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPL 192

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ----A 197
           V   L  MYA+      A  V D++   + V W A+++  AR G   DA+E+  +     
Sbjct: 193 VPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSG 252

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P  N+  W  ++SG  +   + +A      M ++G+   D   +SS++ + AN  +L  G
Sbjct: 253 PEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLR-PDATTVSSLLKSVANTGLLRHG 311

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
            +IH   +    E  ++   A+VDMYAKC  +  A+ +   +  +++ +W S++ G A  
Sbjct: 312 MEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANA 371

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G+ +  L L + M    + P+  T+ GLI   S  G   +   L +  I+  G+TP++  
Sbjct: 372 GRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQ-IKAAGVTPNVVS 430

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEP---TWAALLSAC 417
           +T L+     +G  +++      M  +  +P   T + LL AC
Sbjct: 431 WTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRAC 473



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 57/281 (20%)

Query: 230 REGVDIVDPLVLSSIVGACANF--------AVLELGKQIHGLVIALGYESCLFISNAIVD 281
           R GV      VL S++  CA+             L  Q+H L +  G      ++ A+VD
Sbjct: 36  RTGVPPYSAGVLVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALVD 95

Query: 282 MYAK------CSDII--AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
           + A+      C+ ++  AA+D       KD V W   +   A+  + +E +A++ EM + 
Sbjct: 96  LLARLGRGPSCARLLHEAAED-----GAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQAR 150

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKL----FKSMIEDYGITP---------------- 373
           GV  +  T   +++AC   G + +GR +     K  ++ + + P                
Sbjct: 151 GVPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAA 210

Query: 374 ----------SLQHYTCLLDLLSRSGHLDEAENLIKAMPF---EPDEPTWAALLSAC-KH 419
                     S+  +  ++   +R G +D+A  L   M     EP+  TW  +LS C +H
Sbjct: 211 TRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRH 270

Query: 420 HRNTEMGTRVANHL-LSLKPEDPSSYILLSNVYASAAMWQH 459
            R+ E    VA+ L   L+P+  +   LL +V A+  + +H
Sbjct: 271 GRDREALGVVASMLKQGLRPDATTVSSLLKSV-ANTGLLRH 310



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 95/238 (39%), Gaps = 22/238 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR CA   +    K LH   ++        +   LID Y K   +  A  + E + Q++ 
Sbjct: 470 LRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNL 529

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
           V   ++LT        ++ I +F  M     L+PD   F +L+ AC S+G    G     
Sbjct: 530 VLCNAMLTGLAVHGQGREAIELFHDMWN-SGLKPDSITFTALLTACRSMGLVTEGWEYFD 588

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARS 184
            +   + + P  ++    + +VD+ A+CG  + A    +   +    S W A+L+  +  
Sbjct: 589 SMETKYGVKPTTEN---YACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIH 645

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSG---LVQSRNEIDAFYSFIE-----MRREGVD 234
           G          +   RNLF+     S    L+ +  E +  Y   E     M+  GVD
Sbjct: 646 GNLA-----LAEVAARNLFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVD 698


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/583 (36%), Positives = 325/583 (55%), Gaps = 35/583 (6%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           +K +HA +I+ G  +   L   L++       + YA  + +EMP+     W ++   Y +
Sbjct: 27  LKKIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQVFDEMPKPRIFLWNTLFKGYVR 86

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
             LP +++ ++  M  L  ++PD F +  +VKA   LG    G  +HA  + + F    +
Sbjct: 87  NQLPFESVLLYKKMRDLG-VRPDEFTYPFVVKAISQLGVLPCGVSLHAHVLKNGFECLGI 145

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V + LV MY K G  ++A  +F+S++                               V++
Sbjct: 146 VATELVMMYMKFGELSSAEFLFESMQ-------------------------------VKD 174

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           L  W A ++  VQ+ N   A   F +M  + V   D   + S++ AC     L++G++I+
Sbjct: 175 LVAWNAFIAVCVQTGNSAIALEYFNKMCADAVQF-DSFTVVSMLSACGQLGSLDIGEEIY 233

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
                   E  + + NA +DM+ KC    AA+ +F  M++++VVSW+++IVG A +G + 
Sbjct: 234 DRARKEEIECNIIVENARLDMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMNGDSG 293

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI--EDYGITPSLQHYT 379
           E LAL+  M + G++PN VTF+G++ ACSH GLV +G++ F  M+   D  + P  +HY 
Sbjct: 294 EALALFTMMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRKEHYA 353

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           C++DLL RSG L+EA   IK M  EPD   W ALL AC  HR+  +G +VA+ L+   P+
Sbjct: 354 CMVDLLGRSGLLEEAYEFIKKMRVEPDTGIWGALLGACAVHRDMILGQKVADVLVETAPD 413

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
             S ++LLSN+YA+A  W  V KVR  M  +  KK   YS +EF    H F  G+ SHP 
Sbjct: 414 IGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFDGKIHFFNRGDISHPQ 473

Query: 500 KDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGT 559
              I+E L E+  +++  GYVPDT SV HD+E +EKE  L  HSE+LA+A+GL+    G 
Sbjct: 474 SKAIYEKLDEILKKIRNMGYVPDTGSVFHDVEMEEKESSLSHHSEKLAIAFGLINGRAGH 533

Query: 560 VLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDG 602
            +RV+KNLR C DCH+  K +SR+T REI++RD  R+HHF++G
Sbjct: 534 PIRVMKNLRTCDDCHVFSKFVSRLTSREIIMRDKNRFHHFRNG 576


>gi|225442928|ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/587 (35%), Positives = 329/587 (56%), Gaps = 37/587 (6%)

Query: 26  HAQIIKLGL--HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           H   +K GL  HQY  + N LI  Y +   V+ A  +  E+P  D  S+  I+    +  
Sbjct: 152 HGYALKSGLVFHQY--VKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENG 209

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
            P + + +   M+  + +  D+  + +    C  L   RLG QVH     +    D  V 
Sbjct: 210 YPSEALEVLDRMVD-ECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVS 268

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           S+++DMY KCG   NAR                               ++F +   +N+ 
Sbjct: 269 SAIIDMYGKCGNILNAR-------------------------------KVFNRLQTKNVV 297

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            WTA+++   Q+    +A   F EM  +G+ + +    + ++ +CA  + L  GK +H  
Sbjct: 298 SWTAILAAYSQNGCFEEALNFFPEMEVDGL-LPNEYTFAVLLNSCAGISALGHGKLLHTR 356

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
           +   G+E  + + NA+++MY+K   I AA  +F  M  +D ++W+++I G + HG   E 
Sbjct: 357 IKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREA 416

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           L ++ EM++A   P+ VTFVG++ AC+H+G V +G      +++  GI P ++HYTC++ 
Sbjct: 417 LVVFQEMLAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVG 476

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           LL ++G LDEAEN +K+ P + D   W  LLSAC  H+N  +G +VA  +L + P D  +
Sbjct: 477 LLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGT 536

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
           YILLSN+YA A  W  V K+RKLM    VKKEPG S+IE     H+F +   +HP  ++I
Sbjct: 537 YILLSNMYAKAKRWDGVVKIRKLMRERNVKKEPGASWIEIRNSIHVFVSEGKTHPESNQI 596

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
           +E + EL   ++  GYVPD ++V HD+E ++K   + +HSE+LA+AYGL+K+  G  +RV
Sbjct: 597 YEKVQELLTMIRPMGYVPDIAAVFHDVEDEQKREYVSYHSEKLAIAYGLMKTPSGAPIRV 656

Query: 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +KNLR+C DCH  +K+IS++T R I+VRDA R+H F DG CSC D+W
Sbjct: 657 IKNLRMCVDCHSAVKLISKVTNRMIIVRDANRFHCFGDGGCSCADYW 703



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 116/420 (27%), Positives = 207/420 (49%), Gaps = 36/420 (8%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLP--NTLIDAYGKCDLVQYAHHL 60
           + H +  L+V A  +     K +HA +I         +   N+LI+ Y KCD +  A  L
Sbjct: 25  LEHTIQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARIL 84

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
            + M +R+ VSW +++  Y    L  + + +F TM+++D ++P+ ++FA+++ +C   G 
Sbjct: 85  FDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQ 144

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
              G Q H   + S       VK++L+ MY+                             
Sbjct: 145 VVEGWQCHGYALKSGLVFHQYVKNALICMYS----------------------------- 175

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
             R    K AM ++ + P  ++F +  +++GL+++    +A      M  E + + D + 
Sbjct: 176 --RRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECI-VWDNVT 232

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
             +  G C++   L LG Q+H  +   G E   F+S+AI+DMY KC +I+ A+ +F R++
Sbjct: 233 YVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQ 292

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            K+VVSWT+I+   +Q+G  EE L  + EM   G+ PNE TF  L+ +C+ +  +G G K
Sbjct: 293 TKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHG-K 351

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           L  + I+  G    +     L+++ S+SG ++ A  +   M    D  TW+A++    HH
Sbjct: 352 LLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICR-DSITWSAMICGLSHH 410



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 78/163 (47%), Gaps = 9/163 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K LH +I K G   +  + N LI+ Y K   ++ AH +  EM  RD ++W++++   +  
Sbjct: 351 KLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHH 410

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----KQVHACFVLSPFCD 138
            L ++ + +F  MLA  +  P +  F  ++ AC  LG+ + G     Q+     + P  +
Sbjct: 411 GLGREALVVFQEMLAAKEC-PHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVE 469

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
                + +V +  K G  + A     S  +K + V+W  +LSA
Sbjct: 470 H---YTCIVGLLCKAGRLDEAENFMKSTPVKWDVVAWRTLLSA 509


>gi|48475086|gb|AAT44155.1| hypothetical protein, contains pentrtricopeptide (PPR) repeat
           [Oryza sativa Japonica Group]
 gi|125568883|gb|EAZ10398.1| hypothetical protein OsJ_00231 [Oryza sativa Japonica Group]
          Length = 836

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/600 (33%), Positives = 342/600 (57%), Gaps = 44/600 (7%)

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
           D ++ A  +    P+ +  +W ++L+  ++    ++ + + ++ML    L+PD    +SL
Sbjct: 240 DALELAARMSRSGPEPNVATWNTVLSGCSRHGRDREALGVVASMLK-QGLRPDATTVSSL 298

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKN 170
           +K+  + G  R G ++H CF L    + DV   ++LVDMYAKCG  + A+ V D+++ +N
Sbjct: 299 LKSVANTGLLRHGMEIH-CFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRN 357

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFE----------------------------------- 195
             +W ++++ YA +GR   A+E+ E                                   
Sbjct: 358 LTTWNSLVAGYANAGRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLR 417

Query: 196 ----QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
                    N+  WT+L+SG   +    D+FY   EM+++GV     + +S ++ ACA  
Sbjct: 418 QIKAAGVTPNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQ-PSLVTMSVLLRACAGL 476

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
           A+ + GK++H   +   Y+  + +S A++DMY+K   +++AK IF  +++K++V   +++
Sbjct: 477 ALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNLVLCNAML 536

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G A HGQ  E + L+ +M ++G+KP+ +TF  L+ AC  +GLV +G + F SM   YG+
Sbjct: 537 TGLAVHGQGREAIELFHDMWNSGLKPDSITFTALLTACRSMGLVTEGWEYFDSMETKYGV 596

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
            P+ ++Y C++DLL+R G+LDEA + I+  P +P    W ALL+ C  H N  +    A 
Sbjct: 597 KPTTENYACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIHGNLALAEVAAR 656

Query: 432 HLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFY 491
           +L  L+P + ++Y+L+ N+Y    M+     ++  M    V   PG+S+I+  +G H+F 
Sbjct: 657 NLFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVDSRPGWSWIQIEQGIHVFE 716

Query: 492 AGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYG 551
                HP   EI+E L  L  ++K+ GYVPDTS + ++++++EKE+ L  H+E+LA+ YG
Sbjct: 717 VDGKPHPETAEIYEELIRLVFQIKKAGYVPDTSCIAYNVQEEEKEKLLLGHTEKLAITYG 776

Query: 552 LLKSVPGTV-LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           L++S      +RV+KN R+C DCH V K IS +  R+I++RDA R+HHF DGKCSCND+W
Sbjct: 777 LIRSDASRAPVRVMKNTRMCNDCHEVAKHISSLCDRQIILRDAVRFHHFVDGKCSCNDYW 836



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 184/403 (45%), Gaps = 13/403 (3%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ---RDHVSWASILTAYNQ 81
           LH+  ++ GL +   +   L+D   +         LL E  +   +D V W   +    +
Sbjct: 74  LHSLAVRTGLSRDPRVTCALVDLLARLGRGPSCARLLHEAAEDGAKDAVLWNKHVAMLAE 133

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
           A    + I++F  M A   +  D +  A ++ ACG  GA R G+ VHA  +        +
Sbjct: 134 AEEWDEAIAVFREMQA-RGVPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPL 192

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ----A 197
           V   L  MYA+      A  V D++   + V W A+++  AR G   DA+E+  +     
Sbjct: 193 VPGFLAGMYAENADVAAATRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSG 252

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P  N+  W  ++SG  +   + +A      M ++G+   D   +SS++ + AN  +L  G
Sbjct: 253 PEPNVATWNTVLSGCSRHGRDREALGVVASMLKQGLR-PDATTVSSLLKSVANTGLLRHG 311

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
            +IH   +    E  ++   A+VDMYAKC  +  A+ +   +  +++ +W S++ G A  
Sbjct: 312 MEIHCFFLRNQLEPDVYTGTALVDMYAKCGRLDCAQKVLDALEHRNLTTWNSLVAGYANA 371

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G+ +  L L + M    + P+  T+ GLI   S  G   +   L +  I+  G+TP++  
Sbjct: 372 GRFDIALELVELMKKNRLDPDITTWNGLITGYSMNGQSSQAVLLLRQ-IKAAGVTPNVVS 430

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEP---TWAALLSAC 417
           +T L+     +G  +++      M  +  +P   T + LL AC
Sbjct: 431 WTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRAC 473



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 119/281 (42%), Gaps = 57/281 (20%)

Query: 230 REGVDIVDPLVLSSIVGACANF--------AVLELGKQIHGLVIALGYESCLFISNAIVD 281
           R GV      VL S++  CA+             L  Q+H L +  G      ++ A+VD
Sbjct: 36  RTGVPPYSAGVLVSLLRDCADLHGDDTDHRVARRLAPQLHSLAVRTGLSRDPRVTCALVD 95

Query: 282 MYAK------CSDII--AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
           + A+      C+ ++  AA+D       KD V W   +   A+  + +E +A++ EM + 
Sbjct: 96  LLARLGRGPSCARLLHEAAED-----GAKDAVLWNKHVAMLAEAEEWDEAIAVFREMQAR 150

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKL----FKSMIEDYGITP---------------- 373
           GV  +  T   +++AC   G + +GR +     K  ++ + + P                
Sbjct: 151 GVPADGYTCARVLHACGRAGALREGRAVHAYALKLALDAHPLVPGFLAGMYAENADVAAA 210

Query: 374 ----------SLQHYTCLLDLLSRSGHLDEAENLIKAMPF---EPDEPTWAALLSAC-KH 419
                     S+  +  ++   +R G +D+A  L   M     EP+  TW  +LS C +H
Sbjct: 211 TRVLDAMGAGSVVPWNAVVACCARLGLVDDALELAARMSRSGPEPNVATWNTVLSGCSRH 270

Query: 420 HRNTEMGTRVANHL-LSLKPEDPSSYILLSNVYASAAMWQH 459
            R+ E    VA+ L   L+P+  +   LL +V A+  + +H
Sbjct: 271 GRDREALGVVASMLKQGLRPDATTVSSLLKSV-ANTGLLRH 310



 Score = 48.5 bits (114), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 95/238 (39%), Gaps = 22/238 (9%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR CA   +    K LH   ++        +   LID Y K   +  A  + E + Q++ 
Sbjct: 470 LRACAGLALQKKGKELHCFALRRAYDCDMVVSTALIDMYSKGGSLVSAKVIFESIQQKNL 529

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
           V   ++LT        ++ I +F  M     L+PD   F +L+ AC S+G    G     
Sbjct: 530 VLCNAMLTGLAVHGQGREAIELFHDMWN-SGLKPDSITFTALLTACRSMGLVTEGWEYFD 588

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARS 184
            +   + + P  ++    + +VD+ A+CG  + A    +   +    S W A+L+  +  
Sbjct: 589 SMETKYGVKPTTEN---YACMVDLLARCGYLDEAMDFIERSPIDPGASHWGALLTGCSIH 645

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSG---LVQSRNEIDAFYSFIE-----MRREGVD 234
           G          +   RNLF+     S    L+ +  E +  Y   E     M+  GVD
Sbjct: 646 GNLA-----LAEVAARNLFILEPYNSANYLLMMNLYEYERMYDEAESLKYAMKARGVD 698


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/562 (38%), Positives = 319/562 (56%), Gaps = 36/562 (6%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLA-- 97
           L   L+D Y KC  + YA  + + MP R+ V+W++++  +   +   +   +F  MLA  
Sbjct: 160 LGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQG 219

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
           L  L P     AS ++AC SL   R+G+Q+HA    S    D    +SL+ MYAK     
Sbjct: 220 LCFLSPTSI--ASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAK----- 272

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
                                     +G    A+ +F++  V++   ++ALVSG VQ+  
Sbjct: 273 --------------------------AGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGR 306

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             +AF  F +M+   V+  D   + S++ AC++ A L+ G+  HG VI  G  S   I N
Sbjct: 307 AEEAFLVFKKMQACNVE-PDAATMVSLIPACSHLAALQHGRCSHGSVIIRGLASETSICN 365

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           A++DMYAKC  I  ++ +F  M  +D+VSW ++I G   HG  +E  AL+ EM + G  P
Sbjct: 366 ALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP 425

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           + VTF+ L+ ACSH GLV +G+  F  M   YG+TP ++HY C++DLLSR G LDEA   
Sbjct: 426 DGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF 485

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           I++MP   D   W ALL AC+ ++N ++G +V+  +  L PE   +++LLSN+Y++A  +
Sbjct: 486 IQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRF 545

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
              ++VR +  V   KK PG S+IE     H F  G+ SHP   EI+  L  +   +K+ 
Sbjct: 546 DEAAEVRIIQKVQGFKKSPGCSWIEINGSLHAFVGGDQSHPQSPEIYRELDNILVGIKKL 605

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GY PDTS VL D+E++EKE+ L  HSE+LA+AYG+L       + V KNLRVCGDCH V+
Sbjct: 606 GYQPDTSFVLQDLEEEEKEKALICHSEKLAIAYGILSLSEDKTIFVTKNLRVCGDCHTVI 665

Query: 578 KMISRITKREIVVRDATRYHHF 599
           K IS + +R I+VRDA R+HHF
Sbjct: 666 KHISLVKRRAIIVRDANRFHHF 687



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 119/442 (26%), Positives = 192/442 (43%), Gaps = 77/442 (17%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H   I  GL     +   L+D Y KC  +  A H+   MP RD V+W ++L  Y   
Sbjct: 30  RAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHH 89

Query: 83  NLPQKTIS-IFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL-------- 133
            +    ++ + S  + + +L+P+     +L+      GA   G  VHA  +         
Sbjct: 90  GMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRN 149

Query: 134 --SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
             S   D  ++ ++L+DMYAKCG    AR VFD++  +N V+W+                
Sbjct: 150 SKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWS---------------- 193

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
                          AL+ G V       AF  F  M  +G+  + P  ++S + ACA+ 
Sbjct: 194 ---------------ALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIASALRACASL 238

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
             L +G+Q+H L+   G  + L   N+++ MYAK   I  A  +F  M  KD VS+++++
Sbjct: 239 DHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALV 298

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            G  Q+G+AEE   ++ +M +  V+P+  T V LI ACSH+  +  GR    S+I   G+
Sbjct: 299 SGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCSHGSVIIR-GL 357

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMP----------------------------- 402
                    L+D+ ++ G +D +  +   MP                             
Sbjct: 358 ASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLE 417

Query: 403 -----FEPDEPTWAALLSACKH 419
                F PD  T+  LLSAC H
Sbjct: 418 MNNLGFPPDGVTFICLLSACSH 439



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 148/334 (44%), Gaps = 55/334 (16%)

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           ++ P+++ F   +KAC +L     G+ +H   + +    D  V ++L+DMY KC    +A
Sbjct: 5   RVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDA 64

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
             +F ++  ++ V+W AML+ YA  G    A                  V+ L+  + ++
Sbjct: 65  AHIFATMPARDLVAWNAMLAGYAHHGMYHHA------------------VAHLLSMQMQM 106

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL------ 273
                   +R     +V  L L +  GA A       G  +H   I     +CL      
Sbjct: 107 H------RLRPNASTLVALLPLLAQQGALAQ------GTSVHAYCI----RACLHPNRNS 150

Query: 274 --------FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA 325
                    +  A++DMYAKC  ++ A+ +F  M  ++ V+W+++I G     +  +   
Sbjct: 151 KSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFL 210

Query: 326 LYDEMVSAG---VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
           L+  M++ G   + P  +     + AC+ +  +  G +L  +++   G+   L     LL
Sbjct: 211 LFKAMLAQGLCFLSPTSIA--SALRACASLDHLRMGEQL-HALLAKSGVHADLTAGNSLL 267

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            + +++G +D+A  L   M  + D  +++AL+S 
Sbjct: 268 SMYAKAGLIDQAIALFDEMAVK-DTVSYSALVSG 300


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 212/588 (36%), Positives = 327/588 (55%), Gaps = 35/588 (5%)

Query: 25  LHAQIIKLGLHQYGPLPN-TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           +H+  I+ G     P  +   +D Y K   ++ A HL  EMP R+ V+W +++T      
Sbjct: 33  IHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAVLDG 92

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
            P +TI  +  +     L P+     +   AC       LG+Q H   V   F  D  V 
Sbjct: 93  RPLETIEAYFGLREAGGL-PNVVSACAFFNACAGAMYLSLGEQFHGFVVKCGFEMDVSVL 151

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           +S+VD Y KC     ARAVFD +                                VRN  
Sbjct: 152 NSMVDFYGKCRCAGKARAVFDGMG-------------------------------VRNSV 180

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
            W ++V+   Q+  E +AF +++  RR G +  D +V SS +  CA    L LG+ +H +
Sbjct: 181 SWCSMVAAYAQNGAEEEAFAAYLGARRSGEEPTDFMV-SSALTTCAGLLGLHLGRALHAV 239

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
            +    ++ +F+++A+VDMY KC  +  A+ IF    ++++V+W ++I G A  G A+  
Sbjct: 240 AVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNA 299

Query: 324 LALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
           L ++D+M+ +G   PN +T V +I +CS  GL   G +LF++M E +GI P  +HY C++
Sbjct: 300 LLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVV 359

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           DLL R+G  ++A  +I+ MP  P    W ALL ACK H  TE+G   A  L  L P+D  
Sbjct: 360 DLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKLFELDPQDSG 419

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +++LLSN++ASA  W   + +RK M  + +KK+PG S++ +    H+F A +T H + +E
Sbjct: 420 NHVLLSNMFASAGRWAEATDIRKEMKNVGIKKDPGCSWVTWKNVVHVFRAKDTKHEMYNE 479

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I  LL++L  +M+  GY+PDT   L+D+E++EKE ++F HSE+LA+A+GL+   PG  +R
Sbjct: 480 IQALLSKLRKQMQAAGYMPDTQYSLYDLEEEEKESEVFQHSEKLALAFGLICIPPGVPIR 539

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++KNLR+C DCH   K IS I  REI+VRD  R+HHFK  +CSC D+W
Sbjct: 540 IMKNLRICVDCHRAFKFISGIVGREIIVRDNNRFHHFKQYQCSCGDYW 587



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 54/175 (30%), Positives = 88/175 (50%), Gaps = 5/175 (2%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +  H  ++K G      + N+++D YGKC     A  + + M  R+ VSW S++ AY Q 
Sbjct: 133 EQFHGFVVKCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQN 192

Query: 83  NLPQKTISIFSTMLALDKL--QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
              ++    F+  L   +   +P  F+ +S +  C  L    LG+ +HA  V S    + 
Sbjct: 193 GAEEEA---FAAYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRSCIDANI 249

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
            V S+LVDMY KCG   +A  +F     +N V+W AM+  YA  G  ++A+ +F+
Sbjct: 250 FVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFD 304



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 87/185 (47%), Gaps = 12/185 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHA  ++  +     + + L+D YGKC  V+ A  +  E PQR+ V+W +++  Y   
Sbjct: 234 RALHAVAVRSCIDANIFVASALVDMYGKCGCVEDAEQIFYETPQRNLVTWNAMIGGYAHI 293

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC----FVLSPFCD 138
              Q  + +F  M+   +  P++    +++ +C   G T+ G ++       F + P  +
Sbjct: 294 GDAQNALLVFDDMIRSGETAPNYITLVNVITSCSRGGLTKDGYELFETMRERFGIEPRTE 353

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGRKK----DAMEI 193
                + +VD+  + G+   A  V   + ++ S+S W A+L A    G+ +     A ++
Sbjct: 354 H---YACVVDLLGRAGMEEQAYEVIQGMPMRPSISVWGALLGACKMHGKTELGRIAAEKL 410

Query: 194 FEQAP 198
           FE  P
Sbjct: 411 FELDP 415



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/203 (23%), Positives = 92/203 (45%), Gaps = 6/203 (2%)

Query: 256 LGKQIHGLVIALGYESC-LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
           +G QIH L I  GY     F+S A +DMY K   +  A+ +FG M  ++VV+W +++   
Sbjct: 29  IGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNA 88

Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPS 374
              G+  ET+  Y  +  AG  PN V+      AC+    +  G + F   +   G    
Sbjct: 89  VLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGEQ-FHGFVVKCGFEMD 147

Query: 375 LQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           +     ++D   +     +A  +   M    +  +W ++++A  + +N       A +L 
Sbjct: 148 VSVLNSMVDFYGKCRCAGKARAVFDGMGVR-NSVSWCSMVAA--YAQNGAEEEAFAAYLG 204

Query: 435 SLKP-EDPSSYILLSNVYASAAM 456
           + +  E+P+ +++ S +   A +
Sbjct: 205 ARRSGEEPTDFMVSSALTTCAGL 227


>gi|357132372|ref|XP_003567804.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01030,
           mitochondrial-like [Brachypodium distachyon]
          Length = 851

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/601 (33%), Positives = 340/601 (56%), Gaps = 46/601 (7%)

Query: 52  DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASL 111
           D ++ A  +  + P+    +W ++L+   +    ++ +++   ML    L PD    +SL
Sbjct: 255 DAMELAGRMARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLE-QGLWPDATTVSSL 313

Query: 112 VKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS 171
           +K+  + G  R G +VH  F+      D    ++LVDMYAKCG  + AR VFD+++ +N 
Sbjct: 314 LKSVANAGMVRHGMEVHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRNL 373

Query: 172 VSWTAMLSAYARSGRKKDAMEIFEQAP--------------------------------- 198
            +W ++++ +A +G+ + A+E+ E+                                   
Sbjct: 374 ATWNSLVAGHAYAGQFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQ 433

Query: 199 ------VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD--IVDPLVLSSIVGACAN 250
                   N+  WT+L+SG   +    D+F  F EM+++GV   +V  LVL   + ACA 
Sbjct: 434 IKAAGLTPNVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVL---LRACAG 490

Query: 251 FAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
            A+L+ GK++H   +   Y+  + +  A++DMY+K   + +AK IFGR++ K++V   ++
Sbjct: 491 LALLKKGKELHCFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNLVCCNAM 550

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370
           + G A HGQ+ E + L+ ++  +G+KP+ +TF  L+ AC  +GL+ +G + F +M   YG
Sbjct: 551 LTGLAVHGQSHEAITLFHDLWRSGLKPDSITFTALLTACRSMGLITEGWEYFDNMETKYG 610

Query: 371 ITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVA 430
           + P+ ++Y C++DLL+RSG+LDEA  LI+  P +P    W ALL+ C  H N ++    A
Sbjct: 611 VVPTAENYACMVDLLARSGYLDEAMALIERSPVDPGASLWGALLTGCSIHGNLDLAEVAA 670

Query: 431 NHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIF 490
            +L  L+P + ++Y+++ ++Y    M+     ++  M    V   PG+S+I+  +G H+F
Sbjct: 671 RNLFRLEPYNSANYLMIMSLYEHEQMYDEADSLKYAMKARGVNTRPGWSWIQIEQGIHVF 730

Query: 491 YAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAY 550
               + HP   EI E L  L  ++K  GYVPDTS V++++ ++EKE+ L  H+E+LA+ Y
Sbjct: 731 EVDGSPHPETAEICEELMSLVRQIKMTGYVPDTSCVVYNVPEEEKEKLLLCHTEKLAITY 790

Query: 551 GLLKSVPGTV-LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           GL+ S    + +RV+KN R+C DCH V K IS +  R+I++RDA R+HHF DG CSCND+
Sbjct: 791 GLIHSDASRMPVRVIKNTRMCSDCHEVAKHISALCGRQIILRDAVRFHHFVDGNCSCNDY 850

Query: 610 W 610
           W
Sbjct: 851 W 851



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 182/407 (44%), Gaps = 17/407 (4%)

Query: 25  LHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEMPQ----RDHVSWASILTAY 79
           LH+  ++ G     P +   L D   +      +  LLEE  +    +D V W   +   
Sbjct: 85  LHSLAVRAGHATREPRVACALSDLLARLGRGPSSRRLLEEADESEGGKDAVLWNKQVAML 144

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD- 138
            +A    + I  F  M A   +  D +  A ++ ACG   A R GK VHA  + +   D 
Sbjct: 145 AEAGEWDEAIGAFREMQA-RGVAADGYALARVLHACGRAAARREGKAVHAHALKAGLVDA 203

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVF-DSIKLKNSVSWTAMLSAYARSGRKKDAMEIF--- 194
             +V   L  MYA+      A AV   +     SV+W A+++   R G   DAME+    
Sbjct: 204 HPLVPGFLAGMYAEGADVAAATAVLLRATPPPRSVAWDAVVACCVRLGLVDDAMELAGRM 263

Query: 195 -EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
               P   L  W A++SG  +   + +A      M  +G+   D   +SS++ + AN  +
Sbjct: 264 ARDGPEPTLATWNAVLSGCARHGRDREALAVLRRMLEQGL-WPDATTVSSLLKSVANAGM 322

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           +  G ++H   +  G     +   A+VDMYAKC  +  A+ +F  +  +++ +W S++ G
Sbjct: 323 VRHGMEVHCFFLRHGLVPDAYTGTALVDMYAKCGRLDCARRVFDTLEHRNLATWNSLVAG 382

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
            A  GQ E  L L + M    + PN  T+ GLI   S  GL  +   L +  I+  G+TP
Sbjct: 383 HAYAGQFEAALELVERMKRNRLDPNVTTWNGLITGYSLNGLSSQAMLLLRQ-IKAAGLTP 441

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP---TWAALLSAC 417
           ++  +T L+     +G  +++ N  K M  +  +P   T   LL AC
Sbjct: 442 NVVSWTSLISGSCHNGEYEDSFNFFKEMQKDGVQPSLVTMLVLLRAC 488



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 7/158 (4%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQR----DHVSWASILTAYNQANLPQKTISIFSTMLA 97
           N LI  Y    L   A  LL ++       + VSW S+++        + + + F  M  
Sbjct: 412 NGLITGYSLNGLSSQAMLLLRQIKAAGLTPNVVSWTSLISGSCHNGEYEDSFNFFKEMQK 471

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD-DDVVKSSLVDMYAKCGLP 156
            D +QP       L++AC  L   + GK++H CF L    D D VV ++L+DMY+K G  
Sbjct: 472 -DGVQPSLVTMLVLLRACAGLALLKKGKELH-CFALRRAYDCDMVVGTALIDMYSKAGSL 529

Query: 157 NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
            +A+ +F  I+ KN V   AML+  A  G+  +A+ +F
Sbjct: 530 TSAKRIFGRIQNKNLVCCNAMLTGLAVHGQSHEAITLF 567



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 79/208 (37%), Gaps = 42/208 (20%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR CA   +    K LH   ++        +   LID Y K   +  A  +   +  ++ 
Sbjct: 485 LRACAGLALLKKGKELHCFALRRAYDCDMVVGTALIDMYSKAGSLTSAKRIFGRIQNKNL 544

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V   ++LT         + I++F   L    L+PD   F +L+ AC S+G    G +   
Sbjct: 545 VCCNAMLTGLAVHGQSHEAITLFHD-LWRSGLKPDSITFTALLTACRSMGLITEGWE--- 600

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTA-----MLSAYARS 184
                                            FD+++ K  V  TA     M+   ARS
Sbjct: 601 --------------------------------YFDNMETKYGVVPTAENYACMVDLLARS 628

Query: 185 GRKKDAMEIFEQAPVR-NLFLWTALVSG 211
           G   +AM + E++PV     LW AL++G
Sbjct: 629 GYLDEAMALIERSPVDPGASLWGALLTG 656


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/588 (32%), Positives = 329/588 (55%), Gaps = 32/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K++H   ++ G      +   L+D Y K   +  A  L E M +R+ VSW +I++ Y+  
Sbjct: 142 KSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDH 201

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ I +F+ M     L  D +   SL+ A  S+G  ++G  +H   + + + +D  +
Sbjct: 202 GFSEEAIDLFNLMRR-KGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHI 260

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           K++L+D+Y                   N V                DA  +F +  V+++
Sbjct: 261 KTALMDIYVS----------------HNCVD---------------DAHRVFSEMFVKDV 289

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WT +++G    R+   A   F +M       +D +VL  I+ +C++   L+ G+++H 
Sbjct: 290 AAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHA 349

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L I   + + +F+ +A++DMYA C ++  AK  F  M  KDVV W ++I G   +G   +
Sbjct: 350 LAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTD 409

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L+ +M  +G+ P+E TFV ++YACSH G+V +G ++F  M++     P+LQHY C++
Sbjct: 410 AIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHDIPNLQHYACVI 469

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+L R+G LD A + I  MPF+PD   ++ LL AC+ H N ++G  ++  +  ++P D  
Sbjct: 470 DILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAG 529

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            Y+LLSN+YA A  W+ V   R  +    +KK+PG+S IE  +  + F AGE  HP   +
Sbjct: 530 YYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQEIYTFMAGEKDHPQYFK 589

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I  +L  L  ++K+ GYVP+T+ +L D+    K+  L+ HSE++A+A+GL+++ PGT++R
Sbjct: 590 IEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPGTIIR 649

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + KNLR C DCH   K +S++  R +V++DA R+H F+DG CSC D+W
Sbjct: 650 ITKNLRTCNDCHSASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 217/436 (49%), Gaps = 41/436 (9%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           ++ +HAQII  GL     L N+L++AY  C L+  A  +    P ++ VSW  +++   +
Sbjct: 40  LQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAK 99

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
            +   + I +F  M  +   +P+    +S++ A  +LG  R+ K VH  +V   F  +  
Sbjct: 100 NDCFVEAIDVFREM-TMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVF 158

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V+++LVDMY+K G    AR +F+S+  +N VSW A++S Y+  G  ++A+++F      N
Sbjct: 159 VETALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLF------N 212

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           L                         MRR+G+ +VD   + S++ A  +   L++G  IH
Sbjct: 213 L-------------------------MRRKGL-LVDFYTIMSLIPASLSVGCLQVGTGIH 246

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           G +I  GYE+   I  A++D+Y   + +  A  +F  M  KDV +WT ++ G +     +
Sbjct: 247 GFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAWTLMLTGFSSGRHWD 306

Query: 322 ETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
             +  +++M+    +K + +  +G++ +CSH G + +GR++    I+      ++   + 
Sbjct: 307 RAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALAIKTC-FANNIFVGSA 365

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE- 439
           ++D+ +  G+L++A+     M  E D   W A+++    +     GT   +  L +K   
Sbjct: 366 VIDMYANCGNLEDAKRFFYGMG-EKDVVCWNAMIAG---NGMNGYGTDAIDLFLQMKGSG 421

Query: 440 -DPSSYILLSNVYASA 454
            DP     +S +YA +
Sbjct: 422 LDPDESTFVSVLYACS 437



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 144/292 (49%), Gaps = 6/292 (2%)

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
           N+    ++++AY   G   DA +IF   P +N+  WT L+SGL ++   ++A   F EM 
Sbjct: 55  NTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMT 114

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289
             G    + + +SS++ A AN  ++ + K +H   +  G+E  +F+  A+VDMY+K   +
Sbjct: 115 M-GNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCM 173

Query: 290 IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349
             A+ +F  M  ++VVSW +I+ G + HG +EE + L++ M   G+  +  T + LI A 
Sbjct: 174 GVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPAS 233

Query: 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
             VG +  G  +   +I   G        T L+D+      +D+A  +   M F  D   
Sbjct: 234 LSVGCLQVGTGIHGFIIRT-GYENDKHIKTALMDIYVSHNCVDDAHRVFSEM-FVKDVAA 291

Query: 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYIL---LSNVYASAAMWQ 458
           W  +L+     R+ +   +  N +L ++     S +L   LS+   S A+ Q
Sbjct: 292 WTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCSHSGALQQ 343



 Score = 42.7 bits (99), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 9/114 (7%)

Query: 14  ARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWA 73
            R   AL +KT  A  I +G        + +ID Y  C  ++ A      M ++D V W 
Sbjct: 344 GRRVHALAIKTCFANNIFVG--------SAVIDMYANCGNLEDAKRFFYGMGEKDVVCWN 395

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
           +++            I +F  M     L PD   F S++ AC   G    G Q+
Sbjct: 396 AMIAGNGMNGYGTDAIDLFLQMKG-SGLDPDESTFVSVLYACSHAGMVYEGLQI 448


>gi|297805648|ref|XP_002870708.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316544|gb|EFH46967.1| hypothetical protein ARALYDRAFT_493946 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1111

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 206/585 (35%), Positives = 339/585 (57%), Gaps = 4/585 (0%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCD--LVQYAHHLLEEMPQRDHVSWASILTAY 79
           ++ +HA++   G  +   L    + A    D   + YA+ +L+   +    +  S++ A+
Sbjct: 30  IRQIHAKLYVDGTLKDDHLVGQFVKAVALSDHTYLDYANQILDRSDKPTLFALNSMIRAH 89

Query: 80  NQANLPQKTISIFSTMLAL-DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
            ++ +P+K+   +S +L+  + L+PD++    LV+AC  LG    G QVH   +   F +
Sbjct: 90  CKSPVPEKSFDFYSRILSSGNGLKPDNYTVNFLVQACTGLGMRETGLQVHGMTIRRGFDN 149

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           D  V++ L+ +YA+ G  ++   VF+S+   + V  TAM++A AR G    A ++FE  P
Sbjct: 150 DPHVQTGLISLYAELGCLDSCHKVFNSVSYPDFVCRTAMVTACARCGDVAFARKLFEGMP 209

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            ++   W A++SG  Q     +A   F  M+ EGV  V+ + + S++ AC     L+ G+
Sbjct: 210 EKDPIAWNAMISGYAQVGESREALNLFHLMQLEGVK-VNGVSMISVLSACTQLGALDQGR 268

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
             H  +     +  + +   +VD+YAKC D+  A ++F  M  K+V +W+S + G A +G
Sbjct: 269 WAHSYIERNKIKITVRLGTTLVDLYAKCGDMDKAMEVFWGMEEKNVYTWSSALNGLAMNG 328

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
             E+ L L+  M   GV PN VTFV ++  CS VG V +G+K F SM  ++GI P L HY
Sbjct: 329 FGEKCLKLFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQKHFDSMRNEFGIEPQLDHY 388

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKP 438
            CL+DL +R+G L++A ++I+ MP +     W++LL A + ++N E+G   +  +L L+ 
Sbjct: 389 GCLVDLYARAGRLEDAVSIIQQMPMKAHAAVWSSLLHASRMYKNLELGVLASKKMLELET 448

Query: 439 EDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHP 498
            +  +Y+LLSN+YA +  W +VS VR+ M    V+K+PG S +E     H F+ G+ SHP
Sbjct: 449 SNHGAYVLLSNIYADSDDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHP 508

Query: 499 LKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
             +EI  +  ++   ++  GY  DT+ V+ D++++EKE  L  HSE+ A+A+G++     
Sbjct: 509 KYNEIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKAD 568

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGK 603
             +R+VKNLRVCGDCH V  MIS+I  REI+VRD  R+HHFKDG+
Sbjct: 569 VPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGR 613



 Score =  350 bits (898), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 179/526 (34%), Positives = 292/526 (55%), Gaps = 34/526 (6%)

Query: 87   KTISIFSTMLALD-KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS 145
            K   + S M+  +   +P+   F S++ AC   G    G  +H   + S   ++  V ++
Sbjct: 618  KCFEVLSRMMRSEVGFRPNEVTFLSMISACVHGGNKEEGVCIHGLVMKSGVLEEVKVVNA 677

Query: 146  LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLW 205
            L+++Y K G   ++  +F+ + +KN VSW  M+  + ++G  ++ +  F      N+  W
Sbjct: 678  LMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGLAEEGLAYF------NMSRW 731

Query: 206  TALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265
              L                            D     +++  C +  V+ L + IHGL++
Sbjct: 732  VGLKP--------------------------DQATFLAVLRVCEDIGVVRLSQGIHGLIM 765

Query: 266  ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLA 325
              G+ +   I+ A++D+YAK   +  +  +F  +   D ++WT+++   A HG   + + 
Sbjct: 766  FCGFNANTCITTALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIK 825

Query: 326  LYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLL 385
             ++ MV  G+ P+ VTF  L+ ACSH GLV +GR  F++M + Y I P L HY+C++DL+
Sbjct: 826  HFELMVHYGLSPDHVTFTHLLNACSHSGLVEEGRYYFETMSKRYRIEPRLDHYSCMVDLM 885

Query: 386  SRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYI 445
             RSG L +A  LIK MP EP    W ALL AC+ +++T++GT+ A  L  L+P D  +YI
Sbjct: 886  GRSGLLQDAYGLIKEMPMEPSSGVWGALLGACRVYKDTQLGTKAAKRLFELEPRDGRNYI 945

Query: 446  LLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFE 505
            +LSN+Y+++ +W+  S++R LM    + +  GYSYIE G   H F  G+ SHP  ++I +
Sbjct: 946  MLSNIYSASGLWKDASRIRNLMKQKGLVRASGYSYIEHGNKIHKFVVGDWSHPESEKIQK 1005

Query: 506  LLTELDAEMKRR-GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVV 564
             L E+  +MK   G+   T  VLHD+++  KE  +  HSE++A+A+GLL   P   + + 
Sbjct: 1006 KLKEIRKKMKSELGFKSRTEFVLHDVDEDVKEEMINQHSEKIAMAFGLLVISPMEPIIIR 1065

Query: 565  KNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            KNLR+CGDCH   K IS I KR I++RD+ R+HHF +G CSC D+W
Sbjct: 1066 KNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLEGSCSCRDYW 1111



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 97/171 (56%), Gaps = 1/171 (0%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +H  ++K G+ +   + N L++ YGK   +  +  L E++  ++ VSW +++  + Q  L
Sbjct: 659 IHGLVMKSGVLEEVKVVNALMNLYGKTGDLISSCKLFEDLSVKNLVSWNTMIVIHLQNGL 718

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            ++ ++ F+ M     L+PD   F ++++ C  +G  RL + +H   +   F  +  + +
Sbjct: 719 AEEGLAYFN-MSRWVGLKPDQATFLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITT 777

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
           +L+D+YAK G   ++  VF  I   +S++WTAML+AYA  G  +DA++ FE
Sbjct: 778 ALLDLYAKLGRLEDSSTVFLEITSPDSMAWTAMLAAYATHGYGRDAIKHFE 828



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 115/274 (41%), Gaps = 34/274 (12%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           +L  LRVC    +    + +H  I+  G +    +   L+D Y K   ++ +  +  E+ 
Sbjct: 741 FLAVLRVCEDIGVVRLSQGIHGLIMFCGFNANTCITTALLDLYAKLGRLEDSSTVFLEIT 800

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
             D ++W ++L AY      +  I  F  M+    L PDH  F  L+ AC   G    G+
Sbjct: 801 SPDSMAWTAMLAAYATHGYGRDAIKHFELMVHYG-LSPDHVTFTHLLNACSHSGLVEEGR 859

Query: 126 ----QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSA 180
                +   + + P  D     S +VD+  + GL  +A  +   + ++ S   W A+L A
Sbjct: 860 YYFETMSKRYRIEPRLDH---YSCMVDLMGRSGLLQDAYGLIKEMPMEPSSGVWGALLGA 916

Query: 181 ---YARSG-RKKDAMEIFEQAPV--RNLFLWTAL--VSGLVQSRNEIDAFYSFIEMRREG 232
              Y  +    K A  +FE  P   RN  + + +   SGL +  + I        M+++G
Sbjct: 917 CRVYKDTQLGTKAAKRLFELEPRDGRNYIMLSNIYSASGLWKDASRIRNL-----MKQKG 971

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
                 LV +S       ++ +E G +IH  V+ 
Sbjct: 972 ------LVRAS------GYSYIEHGNKIHKFVVG 993


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/600 (34%), Positives = 333/600 (55%), Gaps = 1/600 (0%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CA+ +   T + ++  I   G+     + + L+D Y KC+ +  A  L +E    + 
Sbjct: 242 ISACAKLEDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNL 301

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
               ++ + Y +  L ++ + + + M+    ++PD     S + +C  L     GK  H 
Sbjct: 302 DLCNAMASNYVRQGLTKEALGVLNLMMD-SGIRPDRISMLSAISSCSQLRNILWGKSCHG 360

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + + F   D + ++L+DMY KC   + A  +FD +  K  V+W ++++ Y  +G    
Sbjct: 361 YVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDA 420

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A E F   P +N+  W  ++S LVQ     +A   F  M+ +    VD + + SI  AC 
Sbjct: 421 AWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACG 480

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +   L+L K I+  +     +  + +   +VDM+++C D  +A  IF  +  +DV +WT+
Sbjct: 481 HLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTA 540

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
            I   A  G  E  + L++EM+  G+KP+ V F+G + AC H GLV +G+++F SM + +
Sbjct: 541 AIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTACCHGGLVQQGKEIFNSMEKLH 600

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           G++P   HY C++DLL R+G L+EA  LIK MP EP++  W +LL+AC+   N EM    
Sbjct: 601 GVSPEDVHYGCMVDLLGRAGLLEEALQLIKDMPTEPNDVIWNSLLAACRVQGNVEMAAFA 660

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  +  L PE   SY+LLSNVYASA  W  ++KVR  M    ++K PG S I+    +H 
Sbjct: 661 AEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSVIQIRGKTHE 720

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F +G+ SHP   +I  +L EL       G+VPD S+VL D++++EK   L  HSE+LA+A
Sbjct: 721 FTSGDESHPEMRKIEAMLDELSQRASDLGHVPDLSNVLMDVDEQEKIFMLSRHSEKLAMA 780

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GL+ S  GT +R+VKNLRVC  CH   K  S++  REI++RD  R+H  + GKCSC+DF
Sbjct: 781 FGLISSNKGTTIRIVKNLRVCSYCHSFAKFASKVYNREIILRDNNRFHFIRQGKCSCSDF 840



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 116/464 (25%), Positives = 201/464 (43%), Gaps = 68/464 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VCA+ +       +H  IIK+   +   + N+L+  Y +C  +  A  + +EM +R+ 
Sbjct: 140 LSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNV 199

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S++  Y +    +  + +F  M+  + + P+      ++ AC  L     G++V+ 
Sbjct: 200 VSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYD 259

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               S    +D++ S+LVDMY KC   + A+ +FD     N     AM S Y R G  K+
Sbjct: 260 FIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKE 319

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +       NL + + +                            D + + S + +C+
Sbjct: 320 ALGVL------NLMMDSGIRP--------------------------DRISMLSAISSCS 347

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               +  GK  HG V+  G+ES   I NA++DMY KC     A  IF RM  K VV+W S
Sbjct: 348 QLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNS 407

Query: 310 IIVGTAQHGQA-----------EETLALYDEMVSAGVKPN-------------------- 338
           I+ G  ++G+            E+ +  ++ ++SA V+ N                    
Sbjct: 408 IVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNV 467

Query: 339 -EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
             VT + +  AC H+G +   + ++   IE   I   ++  T L+D+ SR G  + A ++
Sbjct: 468 DGVTMMSIASACGHLGALDLAKWIYY-YIEKNRIQLDVRLGTTLVDMFSRCGDPESAMSI 526

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPE 439
             ++    D   W A + A     N E    + N ++   LKP+
Sbjct: 527 FNSLT-NRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPD 569



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 132/281 (46%), Gaps = 32/281 (11%)

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
           + S++  Y  + L ++ I +F  M+    + PD + F   +  C        G Q+H   
Sbjct: 101 YNSLIRGYASSGLCKEAILLFIRMMN-SGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLI 159

Query: 132 VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
           +   +  D  V++SLV  YA+CG  + AR VFD +  +N VSWT+M+  YAR    KDA+
Sbjct: 160 IKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAV 219

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
           ++F                              F  +R E V I + + +  ++ ACA  
Sbjct: 220 DLF------------------------------FRMVRDEDV-IPNSVTMVCVISACAKL 248

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
             LE G++++  +   G E    + +A+VDMY KC+ I  AK +F      ++    ++ 
Sbjct: 249 EDLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMA 308

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
               + G  +E L + + M+ +G++P+ ++ +  I +CS +
Sbjct: 309 SNYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQL 349



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 67/211 (31%), Positives = 106/211 (50%), Gaps = 4/211 (1%)

Query: 190 AMEIFEQA-PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           A E+FE        F++ +L+ G   S    +A   FI M   G+   D       +  C
Sbjct: 85  AKEVFENGESYGTCFMYNSLIRGYASSGLCKEAILLFIRMMNSGIS-PDKYTFPFGLSVC 143

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A       G QIHGL+I + Y   LF+ N++V  YA+C ++  A+ +F  M  ++VVSWT
Sbjct: 144 AKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWT 203

Query: 309 SIIVGTAQHGQAEETLALYDEMV-SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           S+I G A+   A++ + L+  MV    V PN VT V +I AC+ +  +  G K++   I 
Sbjct: 204 SMICGYARREFAKDAVDLFFRMVRDEDVIPNSVTMVCVISACAKLEDLETGEKVY-DFIR 262

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
           D GI  +    + L+D+  +   +D A+ L 
Sbjct: 263 DSGIEVNDLMISALVDMYMKCNAIDIAKRLF 293



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 116/253 (45%), Gaps = 40/253 (15%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE--- 63
           L  +  C++ +  L  K+ H  +++ G   +  + N LID Y KC     A  + +    
Sbjct: 340 LSAISSCSQLRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAFRIFDRMSN 399

Query: 64  ----------------------------MPQRDHVSWASILTAYNQANLPQKTISIFSTM 95
                                       MP+++ VSW +I++A  Q N+ ++ I +F  M
Sbjct: 400 KTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEEAIEVFHYM 459

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
            + + +  D     S+  ACG LGA  L K ++     +    D  + ++LVDM+++CG 
Sbjct: 460 QSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLVDMFSRCGD 519

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL-----FLWTALVS 210
           P +A ++F+S+  ++  +WTA + A A +G  + A+E+F +   + L         AL +
Sbjct: 520 PESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGVVFIGALTA 579

Query: 211 ----GLVQSRNEI 219
               GLVQ   EI
Sbjct: 580 CCHGGLVQQGKEI 592


>gi|357498701|ref|XP_003619639.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494654|gb|AES75857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1182

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 211/594 (35%), Positives = 335/594 (56%), Gaps = 10/594 (1%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           +K  HA +I         + N  +       L  YAH L +++PQ D   + +++ +++ 
Sbjct: 195 IKQTHANLITTAQITLPVIANKFLKNVALASLT-YAHKLFDQIPQPDLFIYNTMIKSHSM 253

Query: 82  ANLPQK---TISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
           +  P     +I++F +++      P+ + F     ACG+    R G+QV    V      
Sbjct: 254 S--PHSYLDSIAVFRSLIRDSGYFPNRYSFVFAFGACGNGMCVREGEQVFTHAVKVGLDG 311

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP 198
           +  V ++L+ M+ K G   +AR VFDS   ++  SW  M+ AY  SG    A E+F++  
Sbjct: 312 NVFVVNALIGMFGKWGRVEDARNVFDSAVDRDFYSWNTMIGAYVGSGNMVLAKELFDEMH 371

Query: 199 VRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK 258
            R++  W+ +++G VQ    ++A   F +M +  V   +   + S + AC+N   L+ GK
Sbjct: 372 ERDVVSWSTIIAGYVQVGCFMEALDFFHKMLQSEVK-PNEYTMVSALAACSNLVALDQGK 430

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQH 317
            IH  +     +    +  +++DMYAKC +I +A  +F   + ++ V  W ++I G A H
Sbjct: 431 WIHVYIRRDNIKMNDRLLASLIDMYAKCGEIDSASSVFHEHKVKRKVWPWNAMIGGFAMH 490

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
           G+ EE + ++++M    V PN+VTF+ L+ ACSH  +V +G+  F+ M  DYGI P ++H
Sbjct: 491 GKPEEAINVFEKMKVEKVSPNKVTFIALLNACSHGYMVKEGKSYFELMASDYGINPEIEH 550

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
           Y C++DLLSRSGHL ++E +I +MP  PD   W ALL+AC+ +++ E G R+   +  + 
Sbjct: 551 YGCMVDLLSRSGHLKDSEEMILSMPMAPDVAIWGALLNACRIYKDMERGYRIGRIIKEID 610

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSV-MEVKKEPGYSYIEFGKGSHIFYAGETS 496
           P      +LL N+Y+++  W     VR+   +  + KK PG+S IE     H F  G+ S
Sbjct: 611 PNHIGCNVLLGNIYSTSGRWNEARMVREKNEINSDRKKIPGFSSIELNGVFHEFLVGDRS 670

Query: 497 HPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE-KERQLFWHSERLAVAYGLLKS 555
           HP   EI+  L E+ +++K  GYVP+   VL D + +E KE  L  HSE+LA+A+GL+ +
Sbjct: 671 HPQSREIYSFLDEMISKLKIAGYVPELGEVLLDFDDEEDKETALSVHSEKLAIAFGLMNT 730

Query: 556 VPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
            PGT +R+VKNLRVCGDCH   K IS++  R I+VRD  RYHHFKDG CSC D+
Sbjct: 731 APGTPIRIVKNLRVCGDCHQATKFISKVYDRVIIVRDRMRYHHFKDGICSCKDY 784


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/603 (33%), Positives = 342/603 (56%), Gaps = 35/603 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C   +     + +HA +IK        L   L+  YGKCD ++ A  +L+EMP+++ 
Sbjct: 58  LNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNV 117

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW ++++ Y+Q     + +S+F+ M+  D  +P+ F FA+++ +C       LGKQ+H 
Sbjct: 118 VSWTAMISRYSQTGHSSEALSVFAEMMRSDG-KPNEFTFATVLTSCIRASGLALGKQIHG 176

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V   +     V SSL+DMYAK                               +G+ ++
Sbjct: 177 LIVKWNYDSHIFVGSSLLDMYAK-------------------------------AGQIEE 205

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A EIFE  P R++   TA+++G  Q   + +A   F  ++ EG+   + +  +S++ A +
Sbjct: 206 AREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMR-PNYVTYASLLTALS 264

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
             A+L+ GKQ H  V+         + N+++DMY+KC ++  A+ +F  M  +  +SW +
Sbjct: 265 GLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNA 324

Query: 310 IIVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE- 367
           ++VG ++HG   E L L+  M     VKP+ VT + ++  CSH  +   G  ++  M+  
Sbjct: 325 MLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAG 384

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
           +YGI P  +HY C++D+L R+G +DEA   IK MP +P      +LL AC+ H + ++G 
Sbjct: 385 EYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGE 444

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
            V + L+ ++PE+  +Y++LSN+YASA  W+ V+ VR +M    V KEPG S+I+  +  
Sbjct: 445 YVGHRLIEIEPENAGNYVILSNLYASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQHEQTL 504

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
           H F+A + +HP ++E+   + E+  +MK+ GYVPD S VL+D+++++KE+ L  HSE+LA
Sbjct: 505 HYFHANDRTHPRREEVLAKMKEISIKMKQAGYVPDISCVLYDVDEEQKEKMLLGHSEKLA 564

Query: 548 VAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCN 607
           + +GL+ +  G  +RV KNLR+C DCH   K+ S++ +RE+ +RD  R+H    G CSC 
Sbjct: 565 LTFGLITTGEGIPIRVFKNLRICVDCHNFAKIFSKVFEREVSLRDKNRFHQIVKGICSCG 624

Query: 608 DFW 610
           D+W
Sbjct: 625 DYW 627



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 164/317 (51%), Gaps = 42/317 (13%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           + +L+ AC    A R G++VHA  + + +     +++ L+  Y KC    +AR V D + 
Sbjct: 54  YDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMP 113

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            KN VSWTAM+S Y+++G   +A+ +F +                               
Sbjct: 114 EKNVVSWTAMISRYSQTGHSSEALSVFAEM------------------------------ 143

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           MR +G    +    ++++ +C   + L LGKQIHGL++   Y+S +F+ ++++DMYAK  
Sbjct: 144 MRSDGKP--NEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAG 201

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
            I  A++IF  +  +DVVS T+II G AQ G  EE L ++  + S G++PN VT+  L+ 
Sbjct: 202 QIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLT 261

Query: 348 ACSHVGLVGKGRK----LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
           A S + L+  G++    + +  +  Y +   LQ+   L+D+ S+ G+L  A+ L   MP 
Sbjct: 262 ALSGLALLDHGKQAHCHVLRRELPFYAV---LQN--SLIDMYSKCGNLSYAQRLFDNMP- 315

Query: 404 EPDEPTWAALLSACKHH 420
           E    +W A+L     H
Sbjct: 316 ERTAISWNAMLVGYSKH 332


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/611 (33%), Positives = 336/611 (54%), Gaps = 35/611 (5%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           + +S    RL++CA+ +  L  K+ H   I  GL       N LI+ Y KC     A  +
Sbjct: 55  IDVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRNDCARLV 114

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGA 120
            + M  R  VSW +++  Y  +    + + +FS M   +      F  +S + AC +  A
Sbjct: 115 FDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRM-HREGTHMSEFTLSSTICACAAKYA 173

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
               KQ+H   +      +  V ++++D+YAKC +  +A  VF+ +  +  V+W+++ + 
Sbjct: 174 INECKQLHTIALKLALDSNSFVGTAILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAG 233

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           Y ++G  ++A+ +F  A                               +REGV++ +   
Sbjct: 234 YVQNGLHEEALHLFRCA-------------------------------QREGVELTE-FT 261

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           LS+I+ ACA+ A+   G Q+H +++  G+    F++ ++VD+YA+C  I  A  +F  M 
Sbjct: 262 LSAILSACASLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYME 321

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            K+VV W ++I   ++H  + E + L+++M   G+ PNEVT++ ++  CSH GLV KGR 
Sbjct: 322 HKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRH 381

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
            F  ++ D  + P++ HY+C++D+L RSG  DEA  L+  MPFEP    W +LL +C+++
Sbjct: 382 YFSLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLLGSCRNY 441

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
            N  +    A  L  L+P++  +++LLSNVYA++  W++V   RK +     KKE G S+
Sbjct: 442 NNIRLARIAAEQLFQLEPDNGGNHVLLSNVYAASGNWENVLMARKYLKDSGAKKEMGRSW 501

Query: 481 IEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLF 540
           IE     H+F  GE  HP   +I+  L E+  EM++          LHD+  ++KE  L 
Sbjct: 502 IEAKGKVHVFVVGERKHPRITDIYNKLEEIYHEMRKFARRTSIECDLHDVHAEQKEELLK 561

Query: 541 WHSERLAVAYGLLKSVPGTVLRVV-KNLRVCGDCHIVMKMISRITKREIVVRDATRYHHF 599
            HSE+LA+++GL+ S+P  +  ++ KNLR+CGDCH  MK+ + IT+R ++VRD  R+HHF
Sbjct: 562 HHSEKLALSFGLI-SLPSNIPIIIHKNLRICGDCHSFMKIAAHITERLVIVRDTNRFHHF 620

Query: 600 KDGKCSCNDFW 610
           KDG CSC DFW
Sbjct: 621 KDGSCSCGDFW 631



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 165/379 (43%), Gaps = 67/379 (17%)

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
           +D+   D    +  ++ C    +  +GK  H   +      D +  + L+++Y KCG  +
Sbjct: 50  IDRNLIDVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTLTCNILINLYTKCGRND 109

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
            AR VFD + +++ VSW  M++ Y  SG    A+++F +                     
Sbjct: 110 CARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSR--------------------- 148

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
                     M REG  + +   LSS + ACA    +   KQ+H + + L  +S  F+  
Sbjct: 149 ----------MHREGTHMSE-FTLSSTICACAAKYAINECKQLHTIALKLALDSNSFVGT 197

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           AI+D+YAKC+ I  A  +F +M  + +V+W+S+  G  Q+G  EE L L+      GV+ 
Sbjct: 198 AILDVYAKCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVEL 257

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
            E T   ++ AC+ + L  +G +L  ++I   G   +      L+D+ +R G +++A  L
Sbjct: 258 TEFTLSAILSACASLALKIEGIQL-HAVILKCGFHGNFFVAASLVDVYARCGQIEKAYAL 316

Query: 398 IKAMP--------------------------FE--------PDEPTWAALLSACKHHRNT 423
              M                           FE        P+E T+ ++LS C H    
Sbjct: 317 FAYMEHKNVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLV 376

Query: 424 EMGTRVANHLLSLKPEDPS 442
           E G    + L+S +  +P+
Sbjct: 377 EKGRHYFSLLMSDRTVEPN 395



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 94/202 (46%), Gaps = 4/202 (1%)

Query: 217 NEIDAFYSFIEMRREGVD--IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF 274
           N+++   S  + R   +D  ++D   +S  +  CA    L +GK  HGL I  G  +   
Sbjct: 34  NKLNHSSSLKDRRLARIDRNLIDVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLVTDTL 93

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
             N ++++Y KC     A+ +F  M  + +VSW ++I G    G+  + L L+  M   G
Sbjct: 94  TCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRMHREG 153

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
              +E T    I AC+    + + ++L  ++     +  +    T +LD+ ++   + +A
Sbjct: 154 THMSEFTLSSTICACAAKYAINECKQL-HTIALKLALDSNSFVGTAILDVYAKCNMIKDA 212

Query: 395 ENLIKAMPFEPDEPTWAALLSA 416
             + + MP E    TW++L + 
Sbjct: 213 CWVFEKMP-ERTLVTWSSLFAG 233


>gi|296089956|emb|CBI39775.3| unnamed protein product [Vitis vinifera]
          Length = 599

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 216/594 (36%), Positives = 321/594 (54%), Gaps = 76/594 (12%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNT---LIDAYGKCDLVQYAHHLLE--EMPQRDHVSWASIL 76
           ++ +HAQIIK        LP T   L+ A+       YA  + +  E  + +   W S L
Sbjct: 77  LRQVHAQIIKTNA-PLSILPLTRVGLVCAFTPS--FHYAQQIFKCVEKQKPETFVWNSCL 133

Query: 77  TAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF 136
            A  + + P   I +F  +   D + PD F  +S+++AC +L     G+ +H        
Sbjct: 134 KALAEGDSPIDAIMLFYRLRQYD-VCPDTFTCSSVLRACLNLLDLSNGRILH-------- 184

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
                                    V + +  +   SWT+M++ Y + G+ K+A+ +F +
Sbjct: 185 ------------------------GVVEKVGFR---SWTSMIAGYVQCGKAKEAIHLFAK 217

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
                                          M   GV   + + + +++ ACA+   L+L
Sbjct: 218 -------------------------------MEEAGVK-CNEVTVVAVLAACADLGALDL 245

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           G +IH      G++  + ISN ++DMY KC  +  A  +F  M  + VVSW+++I G A 
Sbjct: 246 GMRIHEYSNRHGFKRNVRISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAM 305

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           HG+AEE L L+ +M   G++PN VTF+GL++ACSH+GL+ +GR+ F SM  DYGI P ++
Sbjct: 306 HGRAEEALRLFSDMSQVGIEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIE 365

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
           HY C++DLLSR+G L EA   I  MP +P+   W ALL AC+ H+N EM      HLL L
Sbjct: 366 HYGCMVDLLSRAGLLHEAHEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLEL 425

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETS 496
            P +   Y++LSN+YA A  W+  ++VRK M   +VKK PG+S I      H F AGE S
Sbjct: 426 DPLNDGYYVVLSNIYAEAGRWEDTARVRKFMKDRQVKKTPGWSSITVDGVVHEFVAGEES 485

Query: 497 HPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSV 556
           HP  ++IF+   EL  EM+ +GYVP+TS VL D+E+ EK + +  HSE+LA+ +GL+ + 
Sbjct: 486 HPDTEQIFQRWEELLEEMRLKGYVPNTSVVLLDIEEGEKVKFVSRHSEKLALVFGLMNTP 545

Query: 557 PGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             T +R++KNLR+C DCH   K+IS I  REIVVRD  R+H F D  CSC D+W
Sbjct: 546 AETPIRIMKNLRICEDCHSAFKLISAIVNREIVVRDRNRFHCFNDNSCSCRDYW 599


>gi|357131283|ref|XP_003567268.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Brachypodium distachyon]
          Length = 654

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/578 (36%), Positives = 333/578 (57%), Gaps = 40/578 (6%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   LI+AY     +  A  + +E P ++   W ++L A   A+   + ++  + M  L 
Sbjct: 110 LSTRLIEAYAALGALPAARQVFDETPVKNIFVWNALLKALALADHGDEALARLADMGRLG 169

Query: 100 KLQPDHFVFASLVKACGSLGATRLG-----KQVHACFVLSPFCDDDVVKSSLVDMYAKCG 154
            +  D + +   +KAC ++ A+        ++VHA  +   +     V ++L+D YAK G
Sbjct: 170 -VPVDSYSYTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDCYAKLG 228

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
           +   A +VF ++  +N VSW+AM+  YA++ R  DA+E+F+                   
Sbjct: 229 IVRYAESVFAAMPERNVVSWSAMIGCYAKNERPADAIELFK------------------- 269

Query: 215 SRNEIDAFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
                       +M     D+V + + + S++ ACA    L  GK +H  ++  G++S +
Sbjct: 270 ------------DMMASDADLVPNSITIVSVLNACAGVNALSHGKLLHAYILRRGFDSLV 317

Query: 274 FISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
            + NA++ MY +C  +   + IF  +  R+DVVSW S+I G   HG   E + +++EM+ 
Sbjct: 318 SVLNALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLISGYGMHGFGPEAVQVFEEMIH 377

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
            G  P+ +TF+ ++ ACSH GLV +G+ LF+SM+E YG+TP  +HY C++DLL R+G LD
Sbjct: 378 VGFSPSIITFISVLGACSHAGLVNEGKMLFESMVE-YGVTPRAEHYACMVDLLGRAGQLD 436

Query: 393 EAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYA 452
           EA  LI++M  EP    W ALL AC+ H + E      +HL  L+P +  +Y+LL+++YA
Sbjct: 437 EAMELIRSMHIEPSPQVWGALLGACRIHGHVEYAEIACSHLFDLEPRNAGNYVLLADIYA 496

Query: 453 SAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDA 512
            A +   V  +++L+    ++K  G S+IE  K  H F + +  +P  +++  L+ E  A
Sbjct: 497 RAKLHNQVGVLKELLEEHALEKVTGCSWIEVKKKLHSFTSVDNKNPPVEQLQALIGEFVA 556

Query: 513 EMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGD 572
           +MK +GYVPDT  VL+D+E +EKER L  HSE+LAVA+GL+ +  G V+R+ KNLR+C D
Sbjct: 557 QMKNQGYVPDTGIVLYDIEGEEKERILIGHSEKLAVAFGLINTCSGEVIRITKNLRLCED 616

Query: 573 CHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           CH V K IS+ T+REIVVRD  R+HHF+DG CSC D+W
Sbjct: 617 CHSVTKFISKFTEREIVVRDVNRFHHFRDGVCSCGDYW 654



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 7/198 (3%)

Query: 6   YLHRLRVC----ARHQIALT-VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           Y H L+ C    A H  A   V+ +HA  I+ G   +  +  TLID Y K  +V+YA  +
Sbjct: 177 YTHGLKACIAVSASHAPASARVREVHAHAIRRGYALHTHVATTLIDCYAKLGIVRYAESV 236

Query: 61  LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD-KLQPDHFVFASLVKACGSLG 119
              MP+R+ VSW++++  Y +   P   I +F  M+A D  L P+     S++ AC  + 
Sbjct: 237 FAAMPERNVVSWSAMIGCYAKNERPADAIELFKDMMASDADLVPNSITIVSVLNACAGVN 296

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI-KLKNSVSWTAML 178
           A   GK +HA  +   F     V ++L+ MY +CG     R +F  I   ++ VSW +++
Sbjct: 297 ALSHGKLLHAYILRRGFDSLVSVLNALMAMYMRCGCLEVGRHIFKWIGHRRDVVSWNSLI 356

Query: 179 SAYARSGRKKDAMEIFEQ 196
           S Y   G   +A+++FE+
Sbjct: 357 SGYGMHGFGPEAVQVFEE 374


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 200/581 (34%), Positives = 326/581 (56%), Gaps = 34/581 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +  CA+ +     + +HA +          L N+LI  Y KC  V  AH + ++M  +D 
Sbjct: 58  ITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKDM 117

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S++  Y Q ++P + I +   ML   + +P+ F FASL+KA G+   + +G Q+HA
Sbjct: 118 VSWTSLIAGYAQNDMPAEAIGLLPGMLK-GRFKPNGFTFASLLKAVGAYADSGIGGQIHA 176

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V   + +D  V S+L+DMYA                               R G+   
Sbjct: 177 LAVKCDWHEDVYVGSALLDMYA-------------------------------RCGKMDM 205

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F++   +N   W AL+SG  +  +   A   F EM+R G +       SSI  A A
Sbjct: 206 ATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATH-FTYSSIFSALA 264

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
               LE GK +H  +I    +   F+ N ++DMYAK   +I A+ +F R+  KD+V+W S
Sbjct: 265 GIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTWNS 324

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           ++   AQ+G  +E ++ ++EM  +G+  N+++F+ ++ ACSH GLV +G+  F  MI++Y
Sbjct: 325 MLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACSHGGLVKEGKHYF-DMIKEY 383

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            + P ++HY  ++DLL R+G L+ A   I  MP EP    W ALL+AC+ H+N ++G   
Sbjct: 384 NLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVWGALLAACRMHKNAKVGQFA 443

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A+H+  L P+D    +LL N+YAS   W   ++VRK+M    VKKEP  S++E     H+
Sbjct: 444 ADHVFQLDPDDSGPPVLLYNIYASTGHWDAAARVRKMMKATGVKKEPACSWVEIENSVHM 503

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F A + +HP  +EI+++  E+  ++++ GYVPD   VL  ++++E+E  L +HSE++A+A
Sbjct: 504 FVANDDTHPRAEEIYKMWDEISMKIRKEGYVPDMDYVLLHVDEQEREANLQYHSEKIALA 563

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVV 590
           + L++   G  +R++KN+R+CGDCH   K IS++ +REIV+
Sbjct: 564 FALIQMPAGATIRIMKNIRICGDCHSAFKYISKVFEREIVI 604



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 160/338 (47%), Gaps = 37/338 (10%)

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
           +L P   V+ + + AC         +++HA    S F  D  + +SL+ +Y KCG    A
Sbjct: 46  ELAPTPRVYHAFITACAQSKNLDDARKIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEA 105

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
             VFD ++ K+ VSWT++++ YA++    +A+                L+ G+++ R + 
Sbjct: 106 HKVFDKMRNKDMVSWTSLIAGYAQNDMPAEAI---------------GLLPGMLKGRFKP 150

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           + F                   +S++ A   +A   +G QIH L +   +   +++ +A+
Sbjct: 151 NGF-----------------TFASLLKAVGAYADSGIGGQIHALAVKCDWHEDVYVGSAL 193

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           +DMYA+C  +  A  +F ++  K+ VSW ++I G A+ G  E  L ++ EM   G +   
Sbjct: 194 LDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATH 253

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
            T+  +  A + +G + +G+ +   MI+      +    T +LD+ ++SG + +A  + +
Sbjct: 254 FTYSSIFSALAGIGALEQGKWVHAHMIKSRQKLTAFVGNT-MLDMYAKSGSMIDARKVFE 312

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
            +    D  TW ++L+A   +    +G    +H   ++
Sbjct: 313 RV-LNKDLVTWNSMLTAFAQY---GLGKEAVSHFEEMR 346


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/589 (35%), Positives = 325/589 (55%), Gaps = 40/589 (6%)

Query: 26   HAQIIKLGLHQYG----PLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
             AQ++++ + + G     L   LI  +G+C  ++ A  +  EM   D VSW ++++A  +
Sbjct: 556  EAQVLRMCILESGYRSACLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAE 615

Query: 82   ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
                ++  ++F  M  L+ + PD F  A+ +  C +     LGK +HAC        D  
Sbjct: 616  NRDFKEVHNLFRRM-QLEGVIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIA 674

Query: 142  VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
            V+++L++MY+ CG    A + F+++K ++ VSW  M +AYA++G  K+A+ +F Q     
Sbjct: 675  VENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQ----- 729

Query: 202  LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
                                      M+ EGV   D L  S+ +      A++  GK  H
Sbjct: 730  --------------------------MQLEGVK-PDKLTFSTTLNVSGGSALVSDGKLFH 762

Query: 262  GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             L    G +S + ++  +V +YAKC  +  A  +F       VV   +II   AQHG +E
Sbjct: 763  ALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSE 822

Query: 322  ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
            E + ++ +M   GV+P+  T V +I AC H G+V +G   F +M E +GI+P+L+HY C 
Sbjct: 823  EAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACF 882

Query: 382  LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
            +DLL R+G L+ AE +I+ MPFE +   W +LL  CK   + E+G R A  +L L P + 
Sbjct: 883  VDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNS 942

Query: 442  SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            +++++LSN+Y +   W+     RK M    VK  PG S+ E GK  H F AG+ SHP  D
Sbjct: 943  AAHVVLSNIYCATGKWKDADVDRKKMLDENVKNAPGMSWFEIGKQVHEFVAGDRSHPKTD 1002

Query: 502  EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
            EI+ +L +L+  M+R GY  D      D+E + KE+ L +HSER+A+A+GL+ + P T L
Sbjct: 1003 EIYVVLDKLELLMRRAGYEADKG---LDVEDELKEKALGYHSERIAIAFGLIATPPETTL 1059

Query: 562  RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            ++VKNLRVCGDCH   K IS +  REI+VRD+ R+HHF +G CSC D W
Sbjct: 1060 KIVKNLRVCGDCHTATKYISMVMGREIIVRDSLRFHHFSNGTCSCKDCW 1108



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 127/460 (27%), Positives = 214/460 (46%), Gaps = 55/460 (11%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGP----LPNTLIDAYGKCDLVQYAHHLLEEMP 65
           L  CA  +     +++HA I +LGL +       + N +I+ Y KC  ++ A  +   +P
Sbjct: 134 LNACANSRDLAIGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIP 193

Query: 66  QRDHVSWASILTAYNQAN-LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
           ++D VSW ++  AY Q        + IF  ML L  L P+   F + + AC SL   R G
Sbjct: 194 EKDVVSWTAMAGAYAQERRFYPDALRIFREML-LQPLAPNVITFITALGACTSL---RDG 249

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNS---VSWTAMLSAY 181
             +H+    +    D +  ++L++MY KCG    A +VF ++  +     VSW AM+SA 
Sbjct: 250 TWLHSLLHEASLGFDPLASNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISAS 309

Query: 182 ARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVL 241
             +GR  DAM IF +  +                            MR   V ++   +L
Sbjct: 310 VEAGRHGDAMAIFRRLRLEG--------------------------MRPNSVTLIT--IL 341

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           +++  +  +F      +  HG +   GY   + I NAI+ MYAKC    AA  +F R+R 
Sbjct: 342 NALAASGVDFGA---ARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRW 398

Query: 302 K-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
           K DV+SW +++  +       + +  +  M+ AG+ PN+V+F+ ++ ACS+   +  GRK
Sbjct: 399 KCDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRK 458

Query: 361 LFKSMI---EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP--TWAALLS 415
           +   ++    DY +  S+   T L+ +  + G + EAE + K MP  P     TW  +L 
Sbjct: 459 IHSLILTRRRDY-VESSVA--TMLVSMYGKCGSISEAELVFKEMPL-PSRSLVTWNVMLG 514

Query: 416 ACKHHRNTEMGTRVANHLL--SLKPEDPSSYILLSNVYAS 453
           A   +  ++        +L   + P+  S   +LS+ Y S
Sbjct: 515 AYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCS 554



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 119/477 (24%), Positives = 222/477 (46%), Gaps = 50/477 (10%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLE 62
           +  Y   L+ C         K  H  I   GL Q+  L N LI+ Y +C  ++ AH +  
Sbjct: 25  LQEYTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFS 84

Query: 63  EMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR 122
           +M +R+ VSW ++++A  Q     +  ++F TML      P+ +   +++ AC +     
Sbjct: 85  KMEERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLA 144

Query: 123 LGKQVHACF----VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAML 178
           +G+ +HA      +        +V +++++MYAKCG   +A AVF +I  K+ VSWTAM 
Sbjct: 145 IGRSIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMA 204

Query: 179 SAYARSGR-KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD 237
            AYA+  R   DA+ IF +  ++ L            + N I    +FI           
Sbjct: 205 GAYAQERRFYPDALRIFREMLLQPL------------APNVI----TFI----------- 237

Query: 238 PLVLSSIVGACANFAVLELGKQIHGLV--IALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
                + +GAC +   L  G  +H L+   +LG++     SNA+++MY KC D   A  +
Sbjct: 238 -----TALGACTS---LRDGTWLHSLLHEASLGFDP--LASNALINMYGKCGDWEGAYSV 287

Query: 296 FGRMRRK---DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
           F  M  +   D+VSW ++I  + + G+  + +A++  +   G++PN VT + ++ A +  
Sbjct: 288 FKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAAS 347

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           G+     + F   I + G    +     ++ + ++ G    A  + + + ++ D  +W  
Sbjct: 348 GVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNT 407

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPS--SYILLSNVYASAAMWQHVSKVRKLM 467
           +L A +  ++        +H+L L   DP+  S+I + N  +++       K+  L+
Sbjct: 408 MLGASEDRKSFGKVVNTFHHML-LAGIDPNKVSFIAILNACSNSEALDFGRKIHSLI 463



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 81/307 (26%), Positives = 131/307 (42%), Gaps = 47/307 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HA + ++GL     + N L++ Y  C   + A    E M  RD VSW  +  AY QA
Sbjct: 658 KVIHACVTEIGLEADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQA 717

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            L ++ + +F  M  L+ ++PD   F++ +   G       GK  HA    S    D  V
Sbjct: 718 GLAKEAVLLFRQM-QLEGVKPDKLTFSTTLNVSGGSALVSDGKLFHALAAESGLDSDVSV 776

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            + LV +YAKCG  + A ++F     + +  WT                          +
Sbjct: 777 ATGLVKLYAKCGKLDEAMSLF-----RGACDWT--------------------------V 805

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG----- 257
            L  A++  L Q     +A   F +M++EGV   D   L SI+ AC +  ++E G     
Sbjct: 806 VLLNAIIGALAQHGFSEEAVKMFWKMQQEGVR-PDVATLVSIISACGHAGMVEEGCSSFL 864

Query: 258 --KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD-VVSWTSIIVGT 314
             K+  G+   L + +C       VD+  +   +  A+ I  +M  +D  + WTS++   
Sbjct: 865 TMKEYFGISPTLEHYACF------VDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLLGTC 918

Query: 315 AQHGQAE 321
              G AE
Sbjct: 919 KLQGDAE 925


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 209/594 (35%), Positives = 315/594 (53%), Gaps = 51/594 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA +I+ GL     +   +++ Y KC  +  A  + ++M  +  V+W  ++  Y QA
Sbjct: 202 RQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQA 261

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +  + +F  ++  + ++ D FVF+ ++KAC SL   R GKQ+HAC        +  V
Sbjct: 262 GRARDALKLFVDLIT-EGVEWDSFVFSVVLKACASLEELRFGKQIHACVAKLGLECEVSV 320

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            + LVD Y KC    +A   F  I+  N VSW+A                          
Sbjct: 321 GTPLVDFYIKCSSFESACRAFQEIREPNDVSWSA-------------------------- 354

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                ++SG  Q     +A  +F  +R +   +++    +SI  AC+  A   +G Q+H 
Sbjct: 355 -----IISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHA 409

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             I        +  +A++ MY+KC  +  A ++F  M   D+V+WT+ I G A +G A E
Sbjct: 410 DAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASE 469

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L+++MVS G+KPN VTF+ ++ ACSH GLV +G+    +M+  Y + P++ HY C++
Sbjct: 470 ALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMI 529

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+ +RSG LDEA   +K MPFEPD  +W   LS C  H+N E+G      L  L PED +
Sbjct: 530 DIYARSGLLDEALRFMKNMPFEPDAMSWKCFLSGCWTHKNLELGKIAGEELRQLDPEDTA 589

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            Y+L  N+Y  A  W+  ++V KLM+   +KKE   S+I+     H F  G+  HP   E
Sbjct: 590 GYVLPFNLYTWAGKWEEAAEVMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQSQE 649

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQ---KEKERQLFWHSERLAVAYGLLKSVPGT 559
           I+E L E D  M+             DM Q    E+  QL  HSERLA+A+GL+ SV G 
Sbjct: 650 IYEKLKEFDGFME------------GDMFQCSMTERREQLLDHSERLAIAFGLI-SVNGN 696

Query: 560 V---LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
               ++V KNLR C DCH   K +S +T  EIV+RD+ R+HHFK+GKCSCND+W
Sbjct: 697 ARAPIKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCNDYW 750



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 196/402 (48%), Gaps = 38/402 (9%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L N ++  Y +C  ++ A  L +EM   + VS  ++++AY +  L  K + +FS ML   
Sbjct: 118 LQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESG 177

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
             +P   ++ +L+K+  +  A  +G+Q+HA  + +  C +  +++ +V+MY KCG    A
Sbjct: 178 D-KPPSSMYTTLLKSLVNPRALDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGA 236

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           + VFD + +K  V+WT ++  Y ++GR +DA+++                          
Sbjct: 237 KRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKL-------------------------- 270

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
                F+++  EGV+  D  V S ++ ACA+   L  GKQIH  V  LG E  + +   +
Sbjct: 271 -----FVDLITEGVEW-DSFVFSVVLKACASLEELRFGKQIHACVAKLGLECEVSVGTPL 324

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA-GVKPN 338
           VD Y KCS   +A   F  +R  + VSW++II G  Q  Q EE +  +  + S   V  N
Sbjct: 325 VDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLN 384

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
             T+  +  ACS +     G ++    I+   +  S    + L+ + S+ G LD+A  + 
Sbjct: 385 SFTYTSIFQACSVLADCNIGGQVHADAIKR-SLIGSQYGESALITMYSKCGCLDDAHEVF 443

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLS--LKP 438
           ++M   PD   W A +S   ++ N     R+   ++S  +KP
Sbjct: 444 ESMD-NPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKP 484



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/315 (24%), Positives = 145/315 (46%), Gaps = 42/315 (13%)

Query: 106 FVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDS 165
           + +  L +AC  L +   G+ +H    +       ++++ ++ MY +CG   +A  +FD 
Sbjct: 82  YSYQCLFEACRELRSLSHGRLLHNRMRMGIENPSVLLQNCVLQMYCECGSLEDADKLFDE 141

Query: 166 IKLKNSVSWTAMLSAYARSGRKKDAMEIF----EQAPVRNLFLWTALVSGLVQSRNEIDA 221
           +   N+VS T M+SAYA  G    A+ +F    E        ++T L+  LV  R     
Sbjct: 142 MSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKPPSSMYTTLLKSLVNPR----- 196

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
                                           L++G+QIH  VI  G  S   I   IV+
Sbjct: 197 -------------------------------ALDIGRQIHAHVIRAGLCSNASIETGIVN 225

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY KC  ++ AK +F +M  K  V+WT ++VG  Q G+A + L L+ ++++ GV+ +   
Sbjct: 226 MYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVGYTQAGRARDALKLFVDLITEGVEWDSFV 285

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F  ++ AC+ +  +  G+++  + +   G+   +   T L+D   +    + A    + +
Sbjct: 286 FSVVLKACASLEELRFGKQI-HACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEI 344

Query: 402 PFEPDEPTWAALLSA 416
             EP++ +W+A++S 
Sbjct: 345 R-EPNDVSWSAIISG 358



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 101/187 (54%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA  +     K +HA + KLGL     +   L+D Y KC   + A    +E+ + + 
Sbjct: 290 LKACASLEELRFGKQIHACVAKLGLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPND 349

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW++I++ Y Q +  ++ +  F ++ + + +  + F + S+ +AC  L    +G QVHA
Sbjct: 350 VSWSAIISGYCQMSQFEEAVKTFKSLRSKNAVVLNSFTYTSIFQACSVLADCNIGGQVHA 409

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +          +S+L+ MY+KCG  ++A  VF+S+   + V+WTA +S +A  G   +
Sbjct: 410 DAIKRSLIGSQYGESALITMYSKCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASE 469

Query: 190 AMEIFEQ 196
           A+ +FE+
Sbjct: 470 ALRLFEK 476



 Score = 42.4 bits (98), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370
           +V  ++HG+  E    + EM  AGV  +  ++  L  AC  +  +  GR L   M    G
Sbjct: 53  LVSLSKHGKLNEAFEFFQEMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRM--RMG 110

Query: 371 I-TPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           I  PS+    C+L +    G L++A+ L   M
Sbjct: 111 IENPSVLLQNCVLQMYCECGSLEDADKLFDEM 142


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 218/623 (34%), Positives = 338/623 (54%), Gaps = 68/623 (10%)

Query: 23  KTLHAQIIKLGLHQYG-PLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           + +HA +I+ GL+     + N L++ Y K   +  A  + E M ++D VSW S+++  +Q
Sbjct: 324 REVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQ 383

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFV-------------------------------FAS 110
               +    +FS M   D++  +  +                               F +
Sbjct: 384 NECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFIN 443

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI-KLK 169
           ++ A  SL    +  Q+HA  +     DD  + ++L+  Y KCG  N    +F  + + +
Sbjct: 444 ILSAVSSLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETR 503

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
           + VSW +M+S Y  +     AM+               LV  ++Q    +D+F       
Sbjct: 504 DEVSWNSMISGYIHNELLHKAMD---------------LVWFMMQKGQRLDSF------- 541

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289
                       ++I+ ACA+ A LE G ++H   I    ES + + +A+VDMY+KC  I
Sbjct: 542 ----------TFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYSKCGRI 591

Query: 290 IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC 349
             A   F  M  ++V SW S+I G A+HG  E+ L L+  M+  G  P+ VTFVG++ AC
Sbjct: 592 DYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSAC 651

Query: 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
           SHVG V +G + FKSM E Y ++P ++H++C++DLL R+G LDE  + I +MP +P+   
Sbjct: 652 SHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLI 711

Query: 410 WAALLSAC--KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
           W  +L AC   + RNTE+G R A  LL L+P++  +Y+LL+N+YAS   W+ V+K R  M
Sbjct: 712 WRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAM 771

Query: 468 SVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL 527
               VKKE G S++    G H+F AG+  HP KD I++ L EL+ +M+  GY+P T   L
Sbjct: 772 KEAAVKKEAGCSWVTMKDGVHVFVAGDKLHPEKDLIYDKLRELNRKMRDAGYIPQTKYAL 831

Query: 528 HDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
            D+E + KE  L +HSE++AVA+ L +      +R++KNLRVCGDCH     IS+I  R+
Sbjct: 832 FDLELENKEELLSYHSEKIAVAFVLTRQ-SALPIRIMKNLRVCGDCHSAFGYISKIVGRQ 890

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           IV+RD+ R+HHF+DGKCSC D+W
Sbjct: 891 IVLRDSNRFHHFEDGKCSCGDYW 913



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 116/438 (26%), Positives = 192/438 (43%), Gaps = 78/438 (17%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH Q IK G      L NTLI+ Y +   +  A  L +EM  R+ V+WA +++ Y Q 
Sbjct: 119 RELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQN 178

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT--RLGKQVHACFVLSPFCDDD 140
             P +  + F  M+    + P+H+ F S ++AC   G +  +LG Q+H     + +  D 
Sbjct: 179 GKPDEACARFRDMVRAGFI-PNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDV 237

Query: 141 VVKSSLVDMYAKC-GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
           VV + L+ MY  C    N+AR+VFD I ++NS+SW +++S Y+R G    A ++F     
Sbjct: 238 VVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQK 297

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE---- 255
                      GL  S    DAF                          + F+VLE    
Sbjct: 298 E----------GLGFSFKPNDAF--------------------------SEFSVLEEGRR 321

Query: 256 LGKQIHGLVIALGY-ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGT 314
            G+++H  VI  G  ++ + I N +V+MYAK   I  A  +F  M  KD VSW S+I G 
Sbjct: 322 KGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGL 381

Query: 315 AQHGQAEETLALYD--------------------------------EMVSAGVKPNEVTF 342
            Q+  +E+   ++                                 +M+  G   + VTF
Sbjct: 382 DQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTF 441

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
           + ++ A S + L     ++  +++  Y ++        LL    + G ++E E +   M 
Sbjct: 442 INILSAVSSLSLHEVSHQI-HALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMS 500

Query: 403 FEPDEPTWAALLSACKHH 420
              DE +W +++S   H+
Sbjct: 501 ETRDEVSWNSMISGYIHN 518



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 109/417 (26%), Positives = 200/417 (47%), Gaps = 25/417 (5%)

Query: 42  NTLIDAYGKC-DLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTM----L 96
           N LI  YG C D    A  + + +  R+ +SW SI++ Y++         +FS+M    L
Sbjct: 241 NVLISMYGSCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGL 300

Query: 97  ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV-VKSSLVDMYAKCGL 155
                  D F   S+++        R G++VHA  + +   D+ V + + LV+MYAK G 
Sbjct: 301 GFSFKPNDAFSEFSVLEE-----GRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGA 355

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
             +A +VF+ +  K+SVSW +++S   ++   +DA E+F   P  +   W +++  L  S
Sbjct: 356 IADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDS 415

Query: 216 RNEI-DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF 274
              +  A   F++M R G  +   +   +I+ A ++ ++ E+  QIH LV+         
Sbjct: 416 EASVSQAVKYFLQMMRGGWGL-SRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTA 474

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRR-KDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
           I NA++  Y KC ++   + IF RM   +D VSW S+I G   +    + + L   M+  
Sbjct: 475 IGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQK 534

Query: 334 GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH----YTCLLDLLSRSG 389
           G + +  TF  ++ AC+ V  + +G +     +   GI   L+      + L+D+ S+ G
Sbjct: 535 GQRLDSFTFATILSACASVATLERGME-----VHACGIRACLESDVVVGSALVDMYSKCG 589

Query: 390 HLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV-ANHLLSLKPEDPSSYI 445
            +D A    + MP   +  +W +++S    H + E   ++    +L  +P D  +++
Sbjct: 590 RIDYASRFFELMPLR-NVYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFV 645



 Score = 79.3 bits (194), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 76/348 (21%), Positives = 149/348 (42%), Gaps = 64/348 (18%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
            F SL+        +   +++H   +   F  +  + ++L+++Y + G   +A+ +FD +
Sbjct: 101 TFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLFDEM 160

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
             +N V+W  ++S Y ++G+  +A   F                                
Sbjct: 161 SNRNLVTWACLISGYTQNGKPDEACARFR------------------------------- 189

Query: 227 EMRREGVDIVDPLVLSSIVGAC--ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284
           +M R G  I +     S + AC  +  +  +LG QIHGL+    Y S + + N ++ MY 
Sbjct: 190 DMVRAGF-IPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYG 248

Query: 285 KCSDIIA-AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV----KPNE 339
            C D    A+ +F  +  ++ +SW SII   ++ G A     L+  M   G+    KPN+
Sbjct: 249 SCLDSANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPND 308

Query: 340 VTFVGLIYACSHVGLVGKGRK--------LFKSMIEDYGITPSLQHYTCLLDLLSRSGHL 391
                   A S   ++ +GR+        + ++ + D  +         L+++ ++SG +
Sbjct: 309 --------AFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIG----NGLVNMYAKSGAI 356

Query: 392 DEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
            +A ++ + M  E D  +W +L+S    +  +E     A  + SL PE
Sbjct: 357 ADACSVFELM-VEKDSVSWNSLISGLDQNECSE----DAAEMFSLMPE 399


>gi|125532437|gb|EAY79002.1| hypothetical protein OsI_34111 [Oryza sativa Indica Group]
          Length = 847

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 204/573 (35%), Positives = 321/573 (56%), Gaps = 35/573 (6%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           + + L D Y KC L+  A  + ++MPQ+D V+W +++  Y +    +  +  F  M    
Sbjct: 308 VASNLADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREG 367

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC-GLPNN 158
            +  D  VF S++ A G L    L K +H C   + F  +  V+++L+DMYAK   + + 
Sbjct: 368 LVGADQHVFCSVLSASGGLKDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESA 427

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           +R +       N VS T+M+  Y  +    D +E                          
Sbjct: 428 SRVLKIDPGGWNVVSGTSMIDGYIET----DCVE-------------------------- 457

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            +A   ++E+RR+GV+  +    SS++  CA  A+LE G Q+H  VI        F+ + 
Sbjct: 458 -EALVIYVELRRQGVE-PNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGST 515

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           +VDMY KC  I  +  +F  +  +  ++W ++I   AQHG   E +  +D M+ +G++PN
Sbjct: 516 LVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDRMIYSGIRPN 575

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
            + FV L+ ACSH GLV +G K F SM E +GI P  +HY+C++D   R+G LDEA   I
Sbjct: 576 HIAFVSLLTACSHAGLVDEGLKYFYSMKEAHGIEPKEEHYSCIIDTYGRAGRLDEAYKFI 635

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
             MP +P+   W +LL AC+   + E+G   A +L+ L+P +   ++ LS +YAS   W+
Sbjct: 636 SEMPIKPNAYGWCSLLGACRMRGSKELGEVAAQNLMKLEPGNTGIHVSLSGIYASLGQWE 695

Query: 459 HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
            V  VRKLM    +KK PG+S+++  K +H+F + + SHP + +I+E L EL   +K  G
Sbjct: 696 DVKAVRKLMRDSRIKKLPGFSWVDSNKKTHVFGSEDWSHPQQKDIYEKLEELTTRIKEEG 755

Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVK-NLRVCGDCHIVM 577
           Y+PDTS +  ++E   KER L +HSER+AVA+ L+ S+P T   +VK NLR+C DCH   
Sbjct: 756 YIPDTSFLPCNLEDIAKERILRYHSERIAVAFALI-SMPATKPIIVKKNLRICIDCHTAF 814

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K I ++ +R+I+VRD +R+HHF +G+CSC D+W
Sbjct: 815 KFICKVERRDIIVRDNSRFHHFVNGRCSCGDYW 847



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/175 (28%), Positives = 95/175 (54%), Gaps = 2/175 (1%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR-DHVSWASILTAYNQ 81
           K++H  + K G      + N LID Y K   V+ A  +L+  P   + VS  S++  Y +
Sbjct: 393 KSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESASRVLKIDPGGWNVVSGTSMIDGYIE 452

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
            +  ++ + I+   L    ++P+ F F+S++K C        G Q+HA  + +    D  
Sbjct: 453 TDCVEEALVIY-VELRRQGVEPNEFTFSSMIKGCAMQALLEQGAQLHAQVIKTDLIRDSF 511

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           V S+LVDMY KCGL + +  +F+ I+ +  ++W A+++ +A+ G  ++A++ F++
Sbjct: 512 VGSTLVDMYGKCGLISLSMQLFNEIEYRTDIAWNAVINVFAQHGHGREAIQAFDR 566



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 106/427 (24%), Positives = 177/427 (41%), Gaps = 42/427 (9%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEE 63
           H    L+ C R       + LHA+++  G       L N LI  Y  C  +  A  L   
Sbjct: 22  HLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAA 81

Query: 64  MPQRDHVSWASILTAYNQANLPQK----------------TISIFSTMLALDKLQPDHFV 107
           MP+R+ VSW ++++  +Q NL                   T  I+ T    + L P H +
Sbjct: 82  MPRRNAVSWTTLVSGLSQ-NLMHADALAAFAAMRRAGVAPTRLIYETKFH-NTLGPKHTL 139

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN--------A 159
            AS   +  +L     G+++       P          L  +   CG   +        A
Sbjct: 140 AASHCHSGPTLMVKYWGQRL-----WRPPAPAAATTVHLASLLQSCGRAGDLRRGRLLHA 194

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           R V       ++     +++ Y+       A+ +F   P RN   WT LVSGL Q+    
Sbjct: 195 RLVLSGAAAASTFLANHLITMYSHCADLASALRLFAAMPRRNAVSWTTLVSGLSQNLMHA 254

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           DA  +F  MRR GV         S     A      L  +      ++G+++ LF+++ +
Sbjct: 255 DALAAFAAMRRAGV--APTRFALSSAARAAAALGAPLRARSCTASASVGFDTELFVASNL 312

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG-VKPN 338
            DMY+KC  +  A  +F +M +KD V+WT++I G A++G  E  +  + +M   G V  +
Sbjct: 313 ADMYSKCGLLSEACRVFDQMPQKDAVAWTAMIDGYAKNGSLEAAVLSFRDMKREGLVGAD 372

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSM---IEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
           +  F  ++ A    GL  K   L KS+   +   G    +     L+D+ ++S  ++ A 
Sbjct: 373 QHVFCSVLSASG--GL--KDGWLSKSIHCCVTKAGFELEVAVRNALIDMYAKSMDVESAS 428

Query: 396 NLIKAMP 402
            ++K  P
Sbjct: 429 RVLKIDP 435



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 145/356 (40%), Gaps = 83/356 (23%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLS-PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
            ASL+++CG  G  R G+ +HA  VLS        + + L+ MY+ C             
Sbjct: 23  LASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHC------------- 69

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
                    A L++         A+ +F   P RN   WT LVSGL Q+    DA  +F 
Sbjct: 70  ---------ADLAS---------ALRLFAAMPRRNAVSWTTLVSGLSQNLMHADALAAFA 111

Query: 227 EMRREGV------------DIVDP-----------------------------------L 239
            MRR GV            + + P                                   +
Sbjct: 112 AMRRAGVAPTRLIYETKFHNTLGPKHTLAASHCHSGPTLMVKYWGQRLWRPPAPAAATTV 171

Query: 240 VLSSIVGACANFAVLELGKQIHG-LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
            L+S++ +C     L  G+ +H  LV++    +  F++N ++ MY+ C+D+ +A  +F  
Sbjct: 172 HLASLLQSCGRAGDLRRGRLLHARLVLSGAAAASTFLANHLITMYSHCADLASALRLFAA 231

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
           M R++ VSWT+++ G +Q+    + LA +  M  AGV P          A + +G   + 
Sbjct: 232 MPRRNAVSWTTLVSGLSQNLMHADALAAFAAMRRAGVAPTRFALSSAARAAAALGAPLRA 291

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           R    S     G    L   + L D+ S+ G L EA  +   MP + D   W A++
Sbjct: 292 RSCTAS--ASVGFDTELFVASNLADMYSKCGLLSEACRVFDQMP-QKDAVAWTAMI 344



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 86/187 (45%), Gaps = 15/187 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ CA   +      LHAQ+IK  L +   + +TL+D YGKC L+  +  L  E+  R  
Sbjct: 482 IKGCAMQALLEQGAQLHAQVIKTDLIRDSFVGSTLVDMYGKCGLISLSMQLFNEIEYRTD 541

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----- 124
           ++W +++  + Q    ++ I  F  M+    ++P+H  F SL+ AC   G    G     
Sbjct: 542 IAWNAVINVFAQHGHGREAIQAFDRMI-YSGIRPNHIAFVSLLTACSHAGLVDEGLKYFY 600

Query: 125 --KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAY 181
             K+ H    + P    +   S ++D Y + G  + A      + +K N+  W ++L A 
Sbjct: 601 SMKEAHG---IEP---KEEHYSCIIDTYGRAGRLDEAYKFISEMPIKPNAYGWCSLLGAC 654

Query: 182 ARSGRKK 188
              G K+
Sbjct: 655 RMRGSKE 661


>gi|225444752|ref|XP_002278169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 596

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/597 (35%), Positives = 334/597 (55%), Gaps = 14/597 (2%)

Query: 23  KTLHAQIIKLGLHQYGP-----LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVS-WASIL 76
           K  H Q+I  GL    P     +  + +D  G  D   YA  LL        V  + + +
Sbjct: 5   KEAHTQLIINGLTHPPPSLRPIISFSALDPSGDID---YALLLLLRTSTPPTVFLFNTTI 61

Query: 77  TAYNQANLPQKTIS---IFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
             +++A  P   +S   +F  M  L  L P++F F  L + C +  A  LG+Q H   + 
Sbjct: 62  RGFSRARRPGSLLSSVLLFVRMGVL-SLAPNNFTFTFLFQGCSNCVAFDLGRQFHGMVIK 120

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
           + F  D  V++S++  Y+ CG  N+AR VFD     + VSW +M+    R+G   +A+ +
Sbjct: 121 NSFEMDVFVRNSIIRFYSVCGRLNDARWVFDESSELDVVSWNSMIDGCIRNGNILEALSL 180

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
           F +   RN   W  ++SG  Q+    +A   F EM+    +  +  +L S++ AC+    
Sbjct: 181 FSKMTERNDISWNMMISGYAQNGQPKEALALFREMQMLDQE-PNSAILVSVLSACSQLGA 239

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L+ G  +H  +          +S A++DMYAKC  I  A   F   R++DV ++T+ I G
Sbjct: 240 LDHGCWVHCYIGKKCVRVDSILSAALIDMYAKCGSIDLAMQAFSTSRKRDVSAYTAAISG 299

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
            A +G +EE L L+++M   G+ P+ V+++ ++ ACSH G V KG   F SM + +GI P
Sbjct: 300 LAMNGCSEEALQLFEQMKGEGISPDGVSYIAVLCACSHAGWVEKGFHYFASMSDVHGIRP 359

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
            L HY C++DLL R+G L+EAE  + +MP +PD   W ALL AC+ + N EMG RV + L
Sbjct: 360 ELDHYACMVDLLGRAGLLEEAEKFVASMPIKPDNVIWGALLGACRVYGNAEMGQRVGSLL 419

Query: 434 LSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAG 493
           +         YILLSN+YA +   +   +VRK M   +V + PG S IE     H F++G
Sbjct: 420 VESDQNHDGRYILLSNIYAESMKGEDAEQVRKTMRRRKVDRVPGCSLIEVAGFVHEFFSG 479

Query: 494 ETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLL 553
           + SH   +EI+ +  E+  E+K+ GY  +T +V+ D+E++EKE  +  HSE+LAVA+G L
Sbjct: 480 DRSHEKTEEIYLMWEEIVKEIKKFGYREETRAVVFDVEEEEKEAVIGHHSEKLAVAFGFL 539

Query: 554 KSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +  G+ LR+VKN+R+C DCH  +K++S++ KR+I +RD   +HHF++G CSC D+W
Sbjct: 540 YTKSGSTLRIVKNIRICSDCHYAIKLVSKVFKRKIAIRDRKCFHHFEEGLCSCKDYW 596


>gi|356550382|ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Glycine max]
          Length = 572

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/594 (36%), Positives = 336/594 (56%), Gaps = 41/594 (6%)

Query: 25  LHAQIIKLGL-HQYGPLPNTLIDAYGKCDL---VQYAHHLLEEMPQRDHVSWASILTAYN 80
           +H Q++KLG+ H+      + +  +        + YA  LL   P  +   + ++L A++
Sbjct: 12  VHGQVVKLGMGHKDASRKLSKVFTFAALSPFGDLNYARLLLSTNPTLNSYYYNTLLRAFS 71

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           Q  LP       S  L++    PD+F F  L+K C       LGKQ+HA      F  D 
Sbjct: 72  QTPLPTPPFHALSLFLSMPS-PPDNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGFAPDL 130

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            +++ L+ MY++ G    AR++FD +                               P R
Sbjct: 131 YIQNVLLHMYSEFGDLLLARSLFDRM-------------------------------PHR 159

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           ++  WT+++ GLV     ++A   F  M + GV++ +  V+S ++ ACA+   L +G+++
Sbjct: 160 DVVSWTSMIGGLVNHDLPVEAINLFERMLQCGVEVNEATVIS-VLRACADSGALSMGRKV 218

Query: 261 HGLVIALGYE--SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           H  +   G E  S   +S A+VDMYAK   I +A+ +F  +  +DV  WT++I G A HG
Sbjct: 219 HANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVVHRDVFVWTAMISGLASHG 278

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
             ++ + ++ +M S+GVKP+E T   ++ AC + GL+ +G  LF  +   YG+ PS+QH+
Sbjct: 279 LCKDAIDMFVDMESSGVKPDERTVTAVLTACRNAGLIREGFMLFSDVQRRYGMKPSIQHF 338

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL--LSL 436
            CL+DLL+R+G L EAE+ + AMP EPD   W  L+ ACK H + +   R+  HL    +
Sbjct: 339 GCLVDLLARAGRLKEAEDFVNAMPIEPDTVLWRTLIWACKVHGDADRAERLMKHLEIQDM 398

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETS 496
           + +D  SYIL SNVYAS   W + ++VR+LM+   + K PG S IE   G H F  G+ +
Sbjct: 399 RADDSGSYILASNVYASTGKWCNKAEVRELMNKKGLVKPPGTSRIEVDGGVHEFVMGDYN 458

Query: 497 HPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSV 556
           HP  +EIF  L E+  ++++ GY P  S VL +M+ +EK  QL  HSE+LA+AYGL++  
Sbjct: 459 HPEAEEIFVELAEVVDKIRKEGYDPRVSEVLLEMDDEEKAVQLLHHSEKLALAYGLIRIG 518

Query: 557 PGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            G+ +R+VKNLR C DCH  MK+IS+I KR+I+VRD  R+HHFK+G+CSC D+W
Sbjct: 519 HGSTIRIVKNLRSCEDCHEFMKLISKIYKRDIIVRDRIRFHHFKNGECSCKDYW 572



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 145/322 (45%), Gaps = 49/322 (15%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ C+R ++    K LHA + KLG      + N L+  Y +   +  A  L + MP RD 
Sbjct: 102 LKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYSEFGDLLLARSLFDRMPHRDV 161

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S++      +LP + I++F  ML    ++ +     S+++AC   GA  +G++VHA
Sbjct: 162 VSWTSMIGGLVNHDLPVEAINLFERMLQCG-VEVNEATVISVLRACADSGALSMGRKVHA 220

Query: 130 CFVL--SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
                         V ++LVDMYAK G   +AR VFD +  ++   WTAM+S  A  G  
Sbjct: 221 NLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVVHRDVFVWTAMISGLASHGLC 280

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
           KDA+++                               F++M   GV   D   +++++ A
Sbjct: 281 KDAIDM-------------------------------FVDMESSGVK-PDERTVTAVLTA 308

Query: 248 CANFAVLELG-------KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           C N  ++  G       ++ +G+  ++ +  CL      VD+ A+   +  A+D    M 
Sbjct: 309 CRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCL------VDLLARAGRLKEAEDFVNAMP 362

Query: 301 -RKDVVSWTSIIVGTAQHGQAE 321
              D V W ++I     HG A+
Sbjct: 363 IEPDTVLWRTLIWACKVHGDAD 384



 Score = 47.0 bits (110), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 84/200 (42%), Gaps = 11/200 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGL--HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR 67
           LR CA        + +HA + + G+  H    +   L+D Y K   +  A  + +++  R
Sbjct: 203 LRACADSGALSMGRKVHANLEEWGIEIHSKSNVSTALVDMYAKGGCIASARKVFDDVVHR 262

Query: 68  DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG--- 124
           D   W ++++      L +  I +F  M +   ++PD     +++ AC + G  R G   
Sbjct: 263 DVFVWTAMISGLASHGLCKDAIDMFVDMES-SGVKPDERTVTAVLTACRNAGLIREGFML 321

Query: 125 -KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYA 182
              V   + + P          LVD+ A+ G    A    +++ ++ ++V W  ++ A  
Sbjct: 322 FSDVQRRYGMKPSIQH---FGCLVDLLARAGRLKEAEDFVNAMPIEPDTVLWRTLIWACK 378

Query: 183 RSGRKKDAMEIFEQAPVRNL 202
             G    A  + +   ++++
Sbjct: 379 VHGDADRAERLMKHLEIQDM 398


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/589 (34%), Positives = 330/589 (56%), Gaps = 36/589 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H+Q+I++G      +   + + Y KC  +  A     +M +++ V+   ++  Y +A
Sbjct: 212 KQIHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKA 271

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +  + +F  M++ + ++ D FVF+ ++KAC +LG    GKQ+H+  +      +  V
Sbjct: 272 ARNRDALLLFGKMIS-EGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSV 330

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            + LVD Y KC     AR  F+SI   N  SW+A+++ Y +SG+   A+E+F+       
Sbjct: 331 GTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKA------ 384

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                    +R +GV +++  + ++I  AC+  + L  G QIH 
Sbjct: 385 -------------------------IRSKGV-LLNSFIYTNIFQACSAVSDLICGAQIHA 418

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             I  G  + L   +A++ MY+KC  +  A   F  + + D V+WT+II   A HG+A E
Sbjct: 419 DAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFE 478

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L+ EM  +GV+PN VTF+GL+ ACSH GLV +G+K+  SM ++YG+ P++ HY C++
Sbjct: 479 ALRLFKEMQGSGVRPNAVTFIGLLNACSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCMI 538

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+ SR+G L EA  +I+++PFEPD  +W +LL  C  HRN E+G   A+++  L P D +
Sbjct: 539 DVYSRAGLLQEALEVIRSLPFEPDVMSWKSLLGGCWSHRNLEIGMIAADNIFRLDPLDSA 598

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y+++ N+YA A  W   ++ RK+M+   ++KE   S+I      H F  G+  HP  ++
Sbjct: 599 TYVIMFNLYALAGKWDEAAQFRKMMAERNLRKEVSCSWIIVKGKVHRFVVGDRHHPQTEQ 658

Query: 503 IFELLTELDAEMKR-RGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           I+  L EL+   K+ +  + +  + L D    E++ QL  HSERLA+AYGL+ +   T +
Sbjct: 659 IYSKLKELNFSFKKSKERLLNEENALCDF--TERKEQLLDHSERLAIAYGLICTAADTPI 716

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            V KN R C DCH   K +S +T RE+VVRD  R+HH   G+CSC D+W
Sbjct: 717 MVFKNTRSCKDCHDFAKRVSIVTGRELVVRDGNRFHHINSGECSCRDYW 765



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 197/431 (45%), Gaps = 38/431 (8%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           + N ++  Y  C     A    +++  +D  SW++I++AY +     + + +F  ML L 
Sbjct: 128 IDNCILKMYCDCKSFTSAERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLG 187

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            + P+  +F++L+ +        LGKQ+H+  +   F  +  +++ + +MY KCG  + A
Sbjct: 188 -ITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGA 246

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
               + +  KN+V+ T ++  Y ++ R +DA+ +F +                       
Sbjct: 247 EVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGK----------------------- 283

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
                   M  EGV++ D  V S I+ ACA    L  GKQIH   I LG ES + +   +
Sbjct: 284 --------MISEGVEL-DGFVFSIILKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPL 334

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           VD Y KC+   AA+  F  +   +  SW+++I G  Q GQ +  L ++  + S GV  N 
Sbjct: 335 VDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIRSKGVLLNS 394

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
             +  +  ACS V  +  G ++    I+  G+   L   + ++ + S+ G +D A     
Sbjct: 395 FIYTNIFQACSAVSDLICGAQIHADAIKK-GLVAYLSGESAMISMYSKCGQVDYAHQAFL 453

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPEDPSSYILLSNVYASAAMW 457
            +  +PD   W A++ A  +H       R+   +    ++P +  ++I L N  + + + 
Sbjct: 454 TID-KPDTVAWTAIICAHAYHGKAFEALRLFKEMQGSGVRP-NAVTFIGLLNACSHSGLV 511

Query: 458 QHVSKVRKLMS 468
           +   K+   MS
Sbjct: 512 KEGKKILDSMS 522



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/314 (22%), Positives = 143/314 (45%), Gaps = 35/314 (11%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CA      T K +H+  IKLGL     +   L+D Y KC   + A    E + + + 
Sbjct: 300 LKACAALGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPND 359

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW++++  Y Q+    + + +F  + +   L  + F++ ++ +AC ++     G Q+HA
Sbjct: 360 FSWSALIAGYCQSGQFDRALEVFKAIRSKGVL-LNSFIYTNIFQACSAVSDLICGAQIHA 418

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +          +S+++ MY+KCG  + A   F +I   ++V+WTA++ A+A  G+  +
Sbjct: 419 DAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFE 478

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +F+                               EM+  GV   + +    ++ AC+
Sbjct: 479 ALRLFK-------------------------------EMQGSGVR-PNAVTFIGLLNACS 506

Query: 250 NFAVLELGKQI-HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSW 307
           +  +++ GK+I   +    G    +   N ++D+Y++   +  A ++   +    DV+SW
Sbjct: 507 HSGLVKEGKKILDSMSDEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEPDVMSW 566

Query: 308 TSIIVGTAQHGQAE 321
            S++ G   H   E
Sbjct: 567 KSLLGGCWSHRNLE 580



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 15/224 (6%)

Query: 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI-EMRRE 231
           SW ++ S+++     ++     +Q  V NL L +    G ++  +E      FI  M + 
Sbjct: 38  SWVSLKSSHSSLRTHQN-----QQGQVENLHLISLAKQGNLREVHE------FIRNMDKV 86

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIA 291
           G+ I +P     +   C     L  GK  H  +  +   S  FI N I+ MY  C    +
Sbjct: 87  GISI-NPRSYEYLFKMCGTLGALSDGKLFHNRLQRMA-NSNKFIDNCILKMYCDCKSFTS 144

Query: 292 AKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           A+  F ++  +D+ SW++II    + G+ +E + L+  M+  G+ PN   F  LI + + 
Sbjct: 145 AERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMSFTD 204

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
             ++  G+++   +I   G   ++   T + ++  + G LD AE
Sbjct: 205 PSMLDLGKQIHSQLIR-IGFAANISIETLISNMYVKCGWLDGAE 247



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 13/182 (7%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y +  + C+     +    +HA  IK GL  Y    + +I  Y KC  V YAH     + 
Sbjct: 397 YTNIFQACSAVSDLICGAQIHADAIKKGLVAYLSGESAMISMYSKCGQVDYAHQAFLTID 456

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           + D V+W +I+ A+       + + +F  M     ++P+   F  L+ AC   G  + GK
Sbjct: 457 KPDTVAWTAIICAHAYHGKAFEALRLFKEMQG-SGVRPNAVTFIGLLNACSHSGLVKEGK 515

Query: 126 QVHACFVLSPFCDDDVVKSS------LVDMYAKCGLPNNARAVFDSIKLKNSV-SWTAML 178
           +     +L    D+  V  +      ++D+Y++ GL   A  V  S+  +  V SW ++L
Sbjct: 516 K-----ILDSMSDEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEPDVMSWKSLL 570

Query: 179 SA 180
             
Sbjct: 571 GG 572


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/606 (35%), Positives = 340/606 (56%), Gaps = 39/606 (6%)

Query: 10   LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            L  CA  ++    + +H   +K GL     + N L+  YG C     +  +   M + D 
Sbjct: 483  LSSCASLRLLTAGQQVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDI 542

Query: 70   VSWASILTAYNQANLPQ-KTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            VSW SI+     ++ P  +++ +FS M+    L P+   F +L+ A   L    LGKQVH
Sbjct: 543  VSWNSIMGVMVSSHAPTAESVEVFSNMMR-SGLTPNKVTFVNLLSALSPLSVLELGKQVH 601

Query: 129  ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK-LKNSVSWTAMLSAYARSGRK 187
            A  +     +D+ V ++L+  YAK G  ++   +F S+   +++VSW +M+S Y  +G  
Sbjct: 602  AVVLKHGAIEDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHL 661

Query: 188  KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
            ++ M+           +W      L+   N+                ++D    S ++ A
Sbjct: 662  QETMDC----------VW------LMMHSNQ----------------MLDCCTFSIVLNA 689

Query: 248  CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
            CA+ A LE G ++H   I    ES + + +A++DMY+KC  I  A  +F  M +K+  SW
Sbjct: 690  CASVAALERGMEMHAFGIRSQLESDVVVESALLDMYSKCGRIDYASKVFNSMSQKNEFSW 749

Query: 308  TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
             S+I G A+HG  E+ L +++EM   G  P+ VTFV ++ ACSH GLV +G   F+ M+E
Sbjct: 750  NSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVLSACSHAGLVDRGLDYFE-MME 808

Query: 368  DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN---TE 424
            D+GI P ++HY+C++DLL R+G L + +  I  MP +P+   W  +L AC+  ++    +
Sbjct: 809  DHGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPNTLIWRTVLVACRQSKDGDRID 868

Query: 425  MGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFG 484
            +G   +  LL L+P++P +Y+L SN YA+   W+  +K R  M    +KKE G S++  G
Sbjct: 869  LGKEASRMLLELEPQNPVNYVLASNFYAATGRWEDTAKARAAMGGAAMKKEAGQSWVTLG 928

Query: 485  KGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSE 544
             G H F AG+ SHP   EI+E L  L  ++K  GYVP T   L+D+E++ KE  L +HSE
Sbjct: 929  DGVHTFIAGDRSHPNTKEIYEKLNFLIQKIKNAGYVPMTEFALYDLEEENKEELLSYHSE 988

Query: 545  RLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKC 604
            +LAVA+ L +S     +R++KNLRVCGDCH   + IS+I  R+I++RD+ R+HHF+DGKC
Sbjct: 989  KLAVAFVLTRSSSDVPIRIMKNLRVCGDCHTAFRYISQIVCRQIILRDSIRFHHFEDGKC 1048

Query: 605  SCNDFW 610
            SC D+W
Sbjct: 1049 SCGDYW 1054



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 114/535 (21%), Positives = 222/535 (41%), Gaps = 97/535 (18%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LH +++K GL     L N L++ Y K   +  A  + + M +R+ VSW  +++ Y  + +
Sbjct: 78  LHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGI 137

Query: 85  PQKTISIFSTML--ALDKLQPDHFVFASLVKACGSLGATRL--GKQVHACFVLSPFCDDD 140
             +   +F  ML    +  +P  F F S+++AC   G   L    QVH     + +  + 
Sbjct: 138 TDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNT 197

Query: 141 VVKSSLVDMYAKC--GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF---- 194
            V ++L+ MY  C  GLP  A+ VFD+  +++ ++W A++S YA+ G       +F    
Sbjct: 198 TVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAML 257

Query: 195 --------------------------------EQAPVR--------NLFLWTALVSGLVQ 214
                                           +Q   R        +L++ +ALVS   +
Sbjct: 258 HDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFAR 317

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV--------------------- 253
                +A   FI ++      ++ L++  +   C+  AV                     
Sbjct: 318 HGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTDTFVVLL 377

Query: 254 ------------LELGKQIHGLVIALGY-ESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
                       L  G+++HG ++  G  +  + +SN +V+MYAKC  I  A  +F  + 
Sbjct: 378 SAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLC 437

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            +D VSW +II    Q+G  E  +  Y  M    + P+    +  + +C+ + L+  G++
Sbjct: 438 ARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAGQQ 497

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           +    ++ +G+         L+ +    G   E+  +  +M  E D  +W          
Sbjct: 498 VHCDAVK-WGLDLDTSVSNALVKMYGDCGARSESWEIFNSMA-EHDIVSW---------- 545

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKE 475
            N+ MG  V++H  + +  +  S ++ S +  +   + ++      +SV+E+ K+
Sbjct: 546 -NSIMGVMVSSHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQ 599



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 180/399 (45%), Gaps = 47/399 (11%)

Query: 27  AQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQ 86
           A+++K G      + + L+ A+ +  ++  A  +   + +R+ V+   ++    + +  +
Sbjct: 294 ARVLKSGSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSE 353

Query: 87  KTISIFSTMLALDKLQPDHFVFASLVKACGSL-----GATRLGKQVHACFVLSPFCDDDV 141
           + + IF  M   D    +   F  L+ A         G  R G++VH   + +   D  +
Sbjct: 354 EAVGIF--MGTRDSFVVNTDTFVVLLSAVAEFSIPEDGLMR-GREVHGHILRTGLIDLKI 410

Query: 142 VKSS-LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
             S+ LV+MYAKCG  + A  VF  +  ++ VS                           
Sbjct: 411 ALSNGLVNMYAKCGAIDKASRVFRLLCARDRVS--------------------------- 443

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG--ACANFAVLELGK 258
               W  ++S L Q+     A  ++  MR+     + P   ++I G  +CA+  +L  G+
Sbjct: 444 ----WNTIISVLDQNGFCEGAMMNYCMMRQ---GCISPSNFAAISGLSSCASLRLLTAGQ 496

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII-VGTAQH 317
           Q+H   +  G +    +SNA+V MY  C     + +IF  M   D+VSW SI+ V  + H
Sbjct: 497 QVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSH 556

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
               E++ ++  M+ +G+ PN+VTFV L+ A S + ++  G+++  +++  +G       
Sbjct: 557 APTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQV-HAVVLKHGAIEDNAV 615

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
              L+   ++SG +D  E L  +M    D  +W +++S 
Sbjct: 616 DNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISG 654



 Score = 88.6 bits (218), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 137/318 (43%), Gaps = 44/318 (13%)

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           +++H   V      D  + + LV++YAK      AR VFD +  +N+VSWT ++S Y  S
Sbjct: 76  ERLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLS 135

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G   +A  +F+        LW                     E  R       P    S+
Sbjct: 136 GITDEAFRVFKA------MLWEG------------------SEFSRP-----TPFTFGSV 166

Query: 245 VGACANFA--VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD--IIAAKDIFGRMR 300
           + AC +    +L    Q+HGLV    Y S   + NA++ MY  CS    + A+ +F    
Sbjct: 167 LRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMYGNCSVGLPLQAQQVFDTTP 226

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMV----SAGVKPNEVTFVGLIYACSHVGL-V 355
            +D+++W +++   A+ G    T  L+  M+    +  ++PNE TF  LI A S      
Sbjct: 227 VRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNEHTFGSLITATSLSSCSS 286

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
           G   ++F  +++  G +  L   + L+   +R G LDEA+++   +           ++ 
Sbjct: 287 GVLDQVFARVLKS-GSSSDLYVGSALVSAFARHGMLDEAKDIFINLKERNAVTLNGLIVG 345

Query: 416 ACKHHRNTE-----MGTR 428
             K H + E     MGTR
Sbjct: 346 LVKQHCSEEAVGIFMGTR 363


>gi|147811587|emb|CAN70294.1| hypothetical protein VITISV_005974 [Vitis vinifera]
          Length = 562

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 197/590 (33%), Positives = 334/590 (56%), Gaps = 34/590 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDL--VQYAHHLLEEMPQRDHVSWASILTAYN 80
           K  HA+I+K GL       + L+      D   + YA  +  +M +     + +++  + 
Sbjct: 5   KQSHARILKXGLFXDSFCASNLVATCALSDWGSMDYACSIFRQMDEPGSFZFNTMMRGHV 64

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           +    ++ +  +  M A   ++PD+F + +L+KAC  L A   G QVHA  +     +D 
Sbjct: 65  KDMNTEEALITYKEM-AERGVKPDNFTYPTLLKACARLPAVEEGMQVHAHILKLGLENDV 123

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V++SL+ MY KCG      AVF+ +  ++  SW+A+++A+A  G               
Sbjct: 124 FVQNSLISMYGKCGEIGVCCAVFEQMNERSVASWSALITAHASLG--------------- 168

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
              +W+             D      +M  EG    +  +L S++ AC +   L+LG+ +
Sbjct: 169 ---MWS-------------DCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSV 212

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG ++       + +  ++++MY KC  +     +F +M +K+ +S++ +I G A HG  
Sbjct: 213 HGFLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYG 272

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
            E L ++ EM+  G++P+++ +VG++ ACSH GLV +G + F  M  ++GI P++QHY C
Sbjct: 273 REGLRIFTEMLEQGLEPDDIVYVGVLNACSHAGLVQEGLQCFNRMKLEHGIEPTIQHYGC 332

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DL+ R+G +DEA  LIK+MP EP++  W +LLSA K H N + G   A  L  L  + 
Sbjct: 333 MVDLMGRAGKIDEALELIKSMPMEPNDVLWRSLLSASKVHNNLQAGEIAAKQLFKLDSQK 392

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
            S Y++LSN+YA A  W+ V++ R  M    + + PG+S +E  +  H F + +  HP  
Sbjct: 393 ASDYVVLSNMYAQAQRWEDVARTRTNMFSKGLSQRPGFSLVEVKRKMHRFVSQDAGHPQS 452

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
           + ++E+L +++ ++K  GY PDT+ VL D++++EK+++L  HS++LA+AY L+ +  G+ 
Sbjct: 453 ESVYEMLYQMEWQLKFEGYXPDTTQVLCDVDEEEKKQRLSGHSQKLAIAYALIHTSQGSP 512

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +R+V+NLR+C DCH   K+IS I  REI VRD  R+HHFKDG CSC D+W
Sbjct: 513 VRIVRNLRMCNDCHTYTKLISIIFDREITVRDRHRFHHFKDGACSCRDYW 562



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 142/320 (44%), Gaps = 36/320 (11%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L+ CAR         +HA I+KLGL     + N+LI  YGKC  +     + E+M +R  
Sbjct: 95  LKACARLPAVEEGMQVHAHILKLGLENDVFVQNSLISMYGKCGEIGVCCAVFEQMNERSV 154

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            SW++++TA+    +    + +   M      + +  +  S++ AC  LGA  LG+ VH 
Sbjct: 155 ASWSALITAHASLGMWSDCLRLLGDMSNEGYWRAEESILVSVLSACTHLGALDLGRSVHG 214

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +    + +V++SL++MY KCG       +F  +  KN +S++ M+S  A  G  ++
Sbjct: 215 FLLRNVSGLNVIVETSLIEMYLKCGXLYKGMCLFQKMAKKNKLSYSVMISGLAMHGYGRE 274

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
            + I                               F EM  +G++  D +V   ++ AC+
Sbjct: 275 GLRI-------------------------------FTEMLEQGLE-PDDIVYVGVLNACS 302

Query: 250 NFAVLELGKQ-IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSW 307
           +  +++ G Q  + + +  G E  +     +VD+  +   I  A ++   M    + V W
Sbjct: 303 HAGLVQEGLQCFNRMKLEHGIEPTIQHYGCMVDLMGRAGKIDEALELIKSMPMEPNDVLW 362

Query: 308 TSIIVGTAQHG--QAEETLA 325
            S++  +  H   QA E  A
Sbjct: 363 RSLLSASKVHNNLQAGEIAA 382


>gi|15229194|ref|NP_190540.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183401|sp|Q9M2Y7.1|PP274_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49710
 gi|6723416|emb|CAB66909.1| putative protein [Arabidopsis thaliana]
 gi|332645058|gb|AEE78579.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 721

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/597 (36%), Positives = 332/597 (55%), Gaps = 40/597 (6%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ-RDHVSWASILTAYN 80
           +K LH   +  G   Y  + N  +  Y K  L++ A  +   M + RD VSW S++ AY 
Sbjct: 157 IKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELRDEVSWNSMIVAYG 216

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           Q     K ++++  M+     + D F  AS++ A  SL     G+Q H   + + F  + 
Sbjct: 217 QHKEGAKALALYKEMI-FKGFKIDMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNS 275

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V S L+D Y+KCG       ++DS K                         +F++    
Sbjct: 276 HVGSGLIDFYSKCG---GCDGMYDSEK-------------------------VFQEILSP 307

Query: 201 NLFLWTALVSGLVQSRNEI---DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           +L +W  ++SG   S NE    +A  SF +M+R G    D      +  AC+N +     
Sbjct: 308 DLVVWNTMISGY--SMNEELSEEAVKSFRQMQRIG-HRPDDCSFVCVTSACSNLSSPSQC 364

Query: 258 KQIHGLVIALGYESC-LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           KQIHGL I     S  + ++NA++ +Y K  ++  A+ +F RM   + VS+  +I G AQ
Sbjct: 365 KQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDARWVFDRMPELNAVSFNCMIKGYAQ 424

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           HG   E L LY  M+ +G+ PN++TFV ++ AC+H G V +G++ F +M E + I P  +
Sbjct: 425 HGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCGKVDEGQEYFNTMKETFKIEPEAE 484

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
           HY+C++DLL R+G L+EAE  I AMP++P    WAALL AC+ H+N  +  R AN L+ +
Sbjct: 485 HYSCMIDLLGRAGKLEEAERFIDAMPYKPGSVAWAALLGACRKHKNMALAERAANELMVM 544

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETS 496
           +P   + Y++L+N+YA A  W+ ++ VRK M    ++K+PG S+IE  K  H+F A + S
Sbjct: 545 QPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWS 604

Query: 497 HPLKDEIFELLTELDAEMKRRGYVPDTSSVL---HDMEQKEKERQLFWHSERLAVAYGLL 553
           HP+  E+ E L E+  +MK+ GYV D    +    +  + ++E +L  HSE+LAVA+GL+
Sbjct: 605 HPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLM 664

Query: 554 KSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +  G  L VVKNLR+CGDCH  +K +S +  REI+VRD  R+H FKDGKCSC D+W
Sbjct: 665 STRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGDYW 721



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 160/328 (48%), Gaps = 16/328 (4%)

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           GK +HA +V S       + +  V++Y+KCG  + ARA F S +  N  S+  ++ AYA+
Sbjct: 27  GKSLHALYVKSIVASSTYLSNHFVNLYSKCGRLSYARAAFYSTEEPNVFSYNVIVKAYAK 86

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
             +   A ++F++ P  +   +  L+SG   +R    A   F  MR+ G + VD   LS 
Sbjct: 87  DSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLGFE-VDGFTLSG 145

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF-GRMRRK 302
           ++ AC +   ++L KQ+H   ++ G++S   ++NA V  Y+K   +  A  +F G    +
Sbjct: 146 LIAACCD--RVDLIKQLHCFSVSGGFDSYSSVNNAFVTYYSKGGLLREAVSVFYGMDELR 203

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           D VSW S+IV   QH +  + LALY EM+  G K +  T   ++ A + +  +  GR+  
Sbjct: 204 DEVSWNSMIVAYGQHKEGAKALALYKEMIFKGFKIDMFTLASVLNALTSLDHLIGGRQFH 263

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLD---EAENLIKAMPFEPDEPTWAALLSACKH 419
             +I+  G   +    + L+D  S+ G  D   ++E + + +   PD   W  ++S   +
Sbjct: 264 GKLIKA-GFHQNSHVGSGLIDFYSKCGGCDGMYDSEKVFQEI-LSPDLVVWNTMISG--Y 319

Query: 420 HRNTEMGTRVANHLLSL-----KPEDPS 442
             N E+          +     +P+D S
Sbjct: 320 SMNEELSEEAVKSFRQMQRIGHRPDDCS 347



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 104/441 (23%), Positives = 189/441 (42%), Gaps = 79/441 (17%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N ++ AY K   +  A  L +E+PQ D VS+ ++++ Y  A      + +F  M  L   
Sbjct: 78  NVIVKAYAKDSKIHIARQLFDEIPQPDTVSYNTLISGYADARETFAAMVLFKRMRKLG-F 136

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD-DVVKSSLVDMYAKCGLPNNAR 160
           + D F  + L+ AC       L KQ+H CF +S   D    V ++ V  Y+K GL   A 
Sbjct: 137 EVDGFTLSGLIAAC--CDRVDLIKQLH-CFSVSGGFDSYSSVNNAFVTYYSKGGLLREAV 193

Query: 161 AVFDSI-KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           +VF  + +L++ VSW +M+ AY +      A+ +++                        
Sbjct: 194 SVFYGMDELRDEVSWNSMIVAYGQHKEGAKALALYK------------------------ 229

Query: 220 DAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
                  EM  +G  I D   L+S++ A  +   L  G+Q HG +I  G+     + + +
Sbjct: 230 -------EMIFKGFKI-DMFTLASVLNALTSLDHLIGGRQFHGKLIKAGFHQNSHVGSGL 281

Query: 280 VDMYAKCSDIIAAKD---IFGRMRRKDVVSWTSIIVGTAQHGQ-AEETLALYDEMVSAGV 335
           +D Y+KC       D   +F  +   D+V W ++I G + + + +EE +  + +M   G 
Sbjct: 282 IDFYSKCGGCDGMYDSEKVFQEILSPDLVVWNTMISGYSMNEELSEEAVKSFRQMQRIGH 341

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
           +P++ +FV +  ACS++    + +++    I+ +  +  +     L+ L  +SG+L +A 
Sbjct: 342 RPDDCSFVCVTSACSNLSSPSQCKQIHGLAIKSHIPSNRISVNNALISLYYKSGNLQDAR 401

Query: 396 NLIKAMP----------------------------------FEPDEPTWAALLSACKHHR 421
            +   MP                                    P++ T+ A+LSAC H  
Sbjct: 402 WVFDRMPELNAVSFNCMIKGYAQHGHGTEALLLYQRMLDSGIAPNKITFVAVLSACAHCG 461

Query: 422 NTEMGTRVANHL---LSLKPE 439
             + G    N +     ++PE
Sbjct: 462 KVDEGQEYFNTMKETFKIEPE 482


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 196/603 (32%), Positives = 328/603 (54%), Gaps = 34/603 (5%)

Query: 7    LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
            L  L  CA+ +     + +H   +K GL     L N L+D Y  C   Q  + +   M Q
Sbjct: 522  LSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQIFRSMGQ 581

Query: 67   RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
            ++ VSW +++T+Y +A L  K   +   M+ LD ++PD F   S + A     + + GK 
Sbjct: 582  KNVVSWTAMITSYMRAGLFDKVAGLLQEMV-LDGIRPDVFAVTSALHAFAGDESLKQGKS 640

Query: 127  VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
            VH   + +       V ++L++MY KC     AR +FD +  K+ +SW  ++  Y+R+  
Sbjct: 641  VHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNF 700

Query: 187  KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
              ++  +F                 L+Q R                    + + ++ I+ 
Sbjct: 701  PNESFSLFSDM--------------LLQFRP-------------------NAVTMTCILP 727

Query: 247  ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
            A A+ + LE G++IH   +  G+    + SNA+VDMY KC  ++ A+ +F R+ +K+++S
Sbjct: 728  AAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLIS 787

Query: 307  WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
            WT +I G   HG  +  +AL+++M  +G++P+  +F  ++YAC H GL  +GR+ FK+M 
Sbjct: 788  WTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQ 847

Query: 367  EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
            ++Y I P L+HYTC++DLLSR+G L EA   I++MP EPD   W +LL  C+ H+N ++ 
Sbjct: 848  KEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLA 907

Query: 427  TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
             +VA+ +  L+PE+   Y+LL+N+YA A  W+ V K++  +    +++  GYS+IE    
Sbjct: 908  EKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRSK 967

Query: 487  SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
             H+F A   +HP  + I E L ++   M++ G+ P     L   +    +  L  HS +L
Sbjct: 968  VHVFIADNRNHPDWNRIAEFLDDVARRMRQEGHDPKKKYALMGADDAVHDEALCGHSSKL 1027

Query: 547  AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
            AVA+G+L    G  +RV KN +VC  CH   K IS++  REI++RD++R+H F+ G+CSC
Sbjct: 1028 AVAFGVLNLPEGRPIRVTKNSKVCSHCHEAAKFISKMCNREIILRDSSRFHRFEGGRCSC 1087

Query: 607  NDF 609
              +
Sbjct: 1088 RGY 1090



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 193/447 (43%), Gaps = 51/447 (11%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLH------QYG----PLPNTLIDAYGKCDLVQY 56
           L  L  CA     L  K +H   +K GL       Q G     L + L+  Y KC  +  
Sbjct: 309 LSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMAS 368

Query: 57  AHHLLEEMPQRDHVS-WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKAC 115
           A  + + M  + +V  W  I+  Y +    ++++S+F  M  L  + PD    + L+K  
Sbjct: 369 ARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELG-IAPDEHAISCLLKCI 427

Query: 116 GSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWT 175
             L   R G   H   V   F              A+C + N                  
Sbjct: 428 TCLSCARDGLVAHGYIVKLGF-------------GAQCAVCN------------------ 456

Query: 176 AMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI 235
           A++S YA+S    DA+ +F + P ++   W +++SG   +    +A   FI M  +G ++
Sbjct: 457 ALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQEL 516

Query: 236 VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDI 295
            D + L S++ ACA       G+ +HG  +  G      ++NA++DMY+ CSD  +   I
Sbjct: 517 -DSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQI 575

Query: 296 FGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLV 355
           F  M +K+VVSWT++I    + G  ++   L  EMV  G++P+       ++A +    +
Sbjct: 576 FRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESL 635

Query: 356 GKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
            +G+ +    I + G+   L     L+++  +  +++EA  LI       D  +W  L+ 
Sbjct: 636 KQGKSVHGYTIRN-GMEKLLPVANALMEMYVKCRNVEEAR-LIFDRVTNKDVISWNTLIG 693

Query: 416 ACKHHRN---TEMGTRVANHLLSLKPE 439
              + RN    E  +  ++ LL  +P 
Sbjct: 694 G--YSRNNFPNESFSLFSDMLLQFRPN 718



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 188/442 (42%), Gaps = 62/442 (14%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGP----LPNTLIDAYGKCDLVQY 56
           + +  Y   +++C   +     K  HA I        G     L   L+ AY KC  +  
Sbjct: 95  VDVRSYCMVVQLCGEERSLEAAKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGE 154

Query: 57  AHHLLEEMPQR--DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA 114
           A  + + MP +  D   W S+++AY +A   Q+ +S+F  M     + PD    + ++K 
Sbjct: 155 ARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCG-VSPDAHAVSCVLKC 213

Query: 115 CGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSW 174
             SLG+   G+ +H                    +  K GL   A AV +          
Sbjct: 214 VSSLGSLTEGEVIHG-------------------LLEKLGL-GQACAVAN---------- 243

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
            A+++ Y+R GR +DA  +F+    R+   W +++ G   +     A   F +M  +G +
Sbjct: 244 -ALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTE 302

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL----------FISNAIVDMYA 284
           I    VLS ++ ACA      +GK +HG  +  G    L           + + +V MY 
Sbjct: 303 ISSVTVLS-VLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYV 361

Query: 285 KCSDIIAAKDIFGRMRRK-DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           KC D+ +A+ +F  M  K +V  W  I+ G A+ G+ EE+L+L+ +M   G+ P+E    
Sbjct: 362 KCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAIS 421

Query: 344 GLI-----YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
            L+      +C+  GLV  G       I   G          L+   ++S  + +A  + 
Sbjct: 422 CLLKCITCLSCARDGLVAHG------YIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVF 475

Query: 399 KAMPFEPDEPTWAALLSACKHH 420
             MP + D  +W +++S C  +
Sbjct: 476 NRMPRQ-DTISWNSVISGCSSN 496


>gi|356546233|ref|XP_003541534.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Glycine max]
          Length = 582

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 198/590 (33%), Positives = 323/590 (54%), Gaps = 34/590 (5%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           ++  HA ++  G H+   L   L+        + Y   L   +   D   + S++ A ++
Sbjct: 26  LQQAHAHLVVTGCHRSRALLTKLLTLSCAAGSIAYTRRLFRSVSDPDSFLFNSLIKASSK 85

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
                  +  +  ML L ++ P  + F S++KAC  L    +G  VH+   +S +  D  
Sbjct: 86  FGFSLDAVLFYRRML-LSRIVPSTYTFTSVIKACADLSLLCIGTLVHSHVFVSGYASDSF 144

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V+++L+  YAK   P                          R  RK     +F++ P R+
Sbjct: 145 VQAALIAFYAKSCTP--------------------------RVARK-----VFDEMPQRS 173

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           +  W +++SG  Q+    +A   F +MR   V+  D     S++ AC+    L+ G  +H
Sbjct: 174 IVAWNSMISGYEQNGLANEAVEVFNKMRESRVE-PDSATFVSVLSACSQLGSLDFGCWLH 232

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             ++  G    + ++ ++V+M+++C D+  A+ +F  M   +VV WT++I G   HG   
Sbjct: 233 DCIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGV 292

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E + ++  M + GV PN VTFV ++ AC+H GL+ +GR +F SM ++YG+ P ++H+ C+
Sbjct: 293 EAMEVFHRMKARGVVPNSVTFVAVLSACAHAGLIDEGRSVFASMKQEYGVVPGVEHHVCM 352

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPT-WAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           +D+  R G L+EA   +K +  +   P  W A+L ACK H+N ++G  VA +L++ +PE+
Sbjct: 353 VDMFGRGGLLNEAYQFVKGLNSDELVPAVWTAMLGACKMHKNFDLGVEVAENLINAEPEN 412

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
           P  Y+LLSN+YA A     V  VR +M    +KK+ GYS I+    S++F  G+ SHP  
Sbjct: 413 PGHYVLLSNMYALAGRMDRVESVRNVMIQRGLKKQVGYSTIDVDNRSYLFSMGDKSHPET 472

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
           +EI+  L EL    K  GY P   S +H++E +E+E  L +HSE+LAVA+GL+K+  G  
Sbjct: 473 NEIYCFLDELIWRCKDAGYAPVPESAMHELEGEEREYALRYHSEKLAVAFGLMKTGDGVT 532

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           LR+VKNLR+C DCH  +K IS +  REI+VRD  R+HHF++G CSC+D+W
Sbjct: 533 LRIVKNLRICEDCHSAIKFISAVMNREIIVRDKLRFHHFREGSCSCSDYW 582



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 151/333 (45%), Gaps = 48/333 (14%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ CA   +      +H+ +   G      +   LI  Y K    + A  + +EMPQR  
Sbjct: 115 IKACADLSLLCIGTLVHSHVFVSGYASDSFVQAALIAFYAKSCTPRVARKVFDEMPQRSI 174

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W S+++ Y Q  L  + + +F+ M    +++PD   F S++ AC  LG+   G  +H 
Sbjct: 175 VAWNSMISGYEQNGLANEAVEVFNKMRE-SRVEPDSATFVSVLSACSQLGSLDFGCWLHD 233

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
           C V S    + V+ +SLV+M+++CG    ARAVF S+   N V WTAM+S Y   G   +
Sbjct: 234 CIVGSGITMNVVLATSLVNMFSRCGDVGRARAVFYSMIEGNVVLWTAMISGYGMHGYGVE 293

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           AME+F +                               M+  GV + + +   +++ ACA
Sbjct: 294 AMEVFHR-------------------------------MKARGV-VPNSVTFVAVLSACA 321

Query: 250 NFAVLELG-------KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           +  +++ G       KQ +G+V  + +  C+      VDM+ +   +  A      +   
Sbjct: 322 HAGLIDEGRSVFASMKQEYGVVPGVEHHVCM------VDMFGRGGLLNEAYQFVKGLNSD 375

Query: 303 DVVS--WTSIIVGTAQHGQAEETLALYDEMVSA 333
           ++V   WT+++     H   +  + + + +++A
Sbjct: 376 ELVPAVWTAMLGACKMHKNFDLGVEVAENLINA 408


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 217/589 (36%), Positives = 331/589 (56%), Gaps = 39/589 (6%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LHA +IK G      + NTLID Y KC+L  Y       M  +D +SW +++  Y Q + 
Sbjct: 408 LHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDC 467

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
             + + +F   +A  +++ D  +  S+++A   L +  + K++H C +L     D V+++
Sbjct: 468 HVEALELFRD-VAKKRMEIDEMILGSILRASSVLKSMLIVKEIH-CHILRKGLLDTVIQN 525

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
            LVD+Y KC     A  VF+SIK K+ VS                               
Sbjct: 526 ELVDVYGKCRNMGYATRVFESIKGKDVVS------------------------------- 554

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           WT+++S    + NE +A   F  M   G+   D + L  I+ A A+ + L  G++IH  +
Sbjct: 555 WTSMISSSALNGNESEAVELFRRMVETGLS-ADSVALLCILSAAASLSALNKGREIHCYL 613

Query: 265 IALGYESCL--FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           +  G+  CL   I+ A+VDMYA C D+ +AK +F R+ RK ++ +TS+I     HG  + 
Sbjct: 614 LRKGF--CLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKA 671

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L+D+M    V P+ ++F+ L+YACSH GL+ +GR   K M  +Y + P  +HY CL+
Sbjct: 672 AVELFDKMRHENVSPDHISFLALLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLV 731

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+L R+  + EA   +K M  EP    W ALL+AC+ H   E+G   A  LL L+P++P 
Sbjct: 732 DMLGRANCVVEAFEFVKMMKTEPTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPG 791

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           + +L+SNV+A    W  V KVR  M    ++K PG S+IE     H F A + SHP   E
Sbjct: 792 NLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKE 851

Query: 503 IFELLTELDAEMKRR-GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           I+E L+E+  +++R  GYV DT  VLH++++ EK + L  HSER+A+AYGLL++     L
Sbjct: 852 IYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACL 911

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+ KNLRVC DCH   K++S++ +R+IV+RDA R+HHF+ G CSC D W
Sbjct: 912 RITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGDSW 960



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 187/388 (48%), Gaps = 37/388 (9%)

Query: 3   ISHYLHRLRVCARHQIALTVKTLHAQIIK-LGLHQYGPLPNTLIDAYGKCDLVQYAHHLL 61
           +  + + L +C + +     + LH++I K     +   L   L+  YGKC  +  A  + 
Sbjct: 80  VEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVF 139

Query: 62  EEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGAT 121
           +EMP R   +W +++ AY     P   ++++  M  ++ +      F +L+KAC  L   
Sbjct: 140 DEMPDRTAFAWNTMIGAYVSNGEPASALALYWNM-RVEGVPLGLSSFPALLKACAKLRDI 198

Query: 122 RLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
           R G ++H+  V   +     + ++LV MYAK    + AR +FD  + K ++V W ++LS+
Sbjct: 199 RSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSS 258

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
           Y+ SG+  + +E+                               F EM   G    +   
Sbjct: 259 YSTSGKSLETLEL-------------------------------FREMHMTG-PAPNSYT 286

Query: 241 LSSIVGACANFAVLELGKQIHGLVI-ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
           + S + AC  F+  +LGK+IH  V+ +  + S L++ NA++ MY +C  +  A+ I  +M
Sbjct: 287 IVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQM 346

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
              DVV+W S+I G  Q+   +E L  + +M++AG K +EV+   +I A   +  +  G 
Sbjct: 347 NNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGM 406

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSR 387
           +L   +I+ +G   +LQ    L+D+ S+
Sbjct: 407 ELHAYVIK-HGWDSNLQVGNTLIDMYSK 433



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 152/314 (48%), Gaps = 45/314 (14%)

Query: 108 FASLVKACGSLGATRLGKQVHA-CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
           FA +++ CG   A   G+Q+H+  F   P  + D +   LV MY KCG  ++A  VFD +
Sbjct: 83  FAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEM 142

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
             + + +W  M+ AY  +G    A+ ++          W                     
Sbjct: 143 PDRTAFAWNTMIGAYVSNGEPASALALY----------WN-------------------- 172

Query: 227 EMRREGVDIVDPLVLSS---IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
            MR EGV    PL LSS   ++ ACA    +  G ++H L++ LGY S  FI NA+V MY
Sbjct: 173 -MRVEGV----PLGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMY 227

Query: 284 AKCSDIIAAKDIF-GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           AK  D+ AA+ +F G   + D V W SI+   +  G++ ETL L+ EM   G  PN  T 
Sbjct: 228 AKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTI 287

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC--LLDLLSRSGHLDEAENLIKA 400
           V  + AC        G+++  S+++    T S + Y C  L+ + +R G + +AE +++ 
Sbjct: 288 VSALTACDGFSYAKLGKEIHASVLKSS--THSSELYVCNALIAMYTRCGKMPQAERILRQ 345

Query: 401 MPFEPDEPTWAALL 414
           M    D  TW +L+
Sbjct: 346 MN-NADVVTWNSLI 358



 Score =  135 bits (339), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 166/353 (47%), Gaps = 37/353 (10%)

Query: 1   MQISHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL 60
           + +S +   L+ CA+ +   +   LH+ ++KLG H  G + N L+  Y K D +  A  L
Sbjct: 180 LGLSSFPALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRL 239

Query: 61  LEEMPQR-DHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG 119
            +   ++ D V W SIL++Y+ +    +T+ +F  M  +    P+ +   S + AC    
Sbjct: 240 FDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREM-HMTGPAPNSYTIVSALTACDGFS 298

Query: 120 ATRLGKQVHACFVLSPFCDDDVVKSSL--VDMYAKCGLPNNARAVFDSIKLKNSVSWTAM 177
             +LGK++HA           V+KSS    ++Y                         A+
Sbjct: 299 YAKLGKEIHA----------SVLKSSTHSSELYV----------------------CNAL 326

Query: 178 LSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVD 237
           ++ Y R G+   A  I  Q    ++  W +L+ G VQ+    +A   F +M   G    D
Sbjct: 327 IAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAG-HKSD 385

Query: 238 PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297
            + ++SI+ A    + L  G ++H  VI  G++S L + N ++DMY+KC+        F 
Sbjct: 386 EVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFL 445

Query: 298 RMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350
           RM  KD++SWT++I G AQ+    E L L+ ++    ++ +E+    ++ A S
Sbjct: 446 RMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASS 498



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/288 (21%), Positives = 112/288 (38%), Gaps = 28/288 (9%)

Query: 248 CANFAVLELGKQIHGLVIALGYESCL-FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           C     +  G+Q+H  +        L F++  +V MY KC  +  A+ +F  M  +   +
Sbjct: 90  CGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFA 149

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W ++I     +G+    LALY  M   GV     +F  L+ AC+ +  +  G +L  S++
Sbjct: 150 WNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRSGSEL-HSLL 208

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
              G   +      L+ + +++  L  A  L      + D   W ++LS+      +   
Sbjct: 209 VKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLET 268

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
             +   +    P  P+SY ++S + A                        G+SY + GK 
Sbjct: 269 LELFREMHMTGPA-PNSYTIVSALTAC----------------------DGFSYAKLGKE 305

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKE 534
            H      ++H    E++ +   L A   R G +P    +L  M   +
Sbjct: 306 IHASVLKSSTH--SSELY-VCNALIAMYTRCGKMPQAERILRQMNNAD 350


>gi|302795364|ref|XP_002979445.1| hypothetical protein SELMODRAFT_110780 [Selaginella moellendorffii]
 gi|300152693|gb|EFJ19334.1| hypothetical protein SELMODRAFT_110780 [Selaginella moellendorffii]
          Length = 637

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/612 (36%), Positives = 327/612 (53%), Gaps = 41/612 (6%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   LR CA  +     + LH +I +     Y  L NTLI  YG C  V  A    + + 
Sbjct: 60  YASLLRQCASARALDLGQLLHEEIARRRFDGYTFLGNTLITMYGSCGDVDRAKKAFDRID 119

Query: 66  QRDH-VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
            R++ VSW S++  Y Q    ++ + +F  M  L   QP+   F S + A G+LGA   G
Sbjct: 120 SRNNTVSWNSMIAGYAQNAFSKEALKLFKAM-DLQGFQPNKVTFVSALDAAGNLGALPEG 178

Query: 125 KQVHACFVLSPFCDDDV-VKSSLVDMYAKC-----GLPNNARAVFDSIKLKNSVSWTAML 178
             +H   VL   C+ D  V ++L++ + KC     G P+  +A+FD ++ ++ VSW+ ++
Sbjct: 179 SAIHE-EVLEHDCETDTAVATALINFFGKCPYCQSGDPHQVQAIFDRMRDRDDVSWSTLV 237

Query: 179 SAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238
            AYA+S + + +ME+F++  V           G   +R      ++F+            
Sbjct: 238 GAYAQSNQHRTSMELFKKMDVE----------GYKPTR------FTFM------------ 269

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
               S+V AC   + L  G+ +H  ++    +  + + N IV+M+ +C  +  +   F  
Sbjct: 270 ----SVVDACGKLSALREGRVLHSSIMNSALKWDVVLQNGIVNMFGRCGSVEESSSAFQE 325

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
           M ++D VSW+ +I   A +G   E L  +  M   G  P+E+TFV ++  C+H GL+   
Sbjct: 326 MLQRDAVSWSIMISAFAHNGHGAEALETFLAMNLDGQTPDELTFVSILSVCAHAGLLRDA 385

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
           R     M+ DY + P L HY CL+DLL RSG L  AE L++ MP+EP    W  LL+ACK
Sbjct: 386 RGHLVDMVGDYALVPGLDHYVCLVDLLCRSGRLGAAEELVETMPYEPHGSAWLTLLAACK 445

Query: 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGY 478
              + + G RV    L+  P+  + Y LLS++YA A     +  VRK M    +KK+ G 
Sbjct: 446 MQGDLKRGARVGKSFLATDPDTSAPYALLSSIYAEAKRVNEMRIVRKAMEERGIKKQAGC 505

Query: 479 SYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQ 538
           SYIE     H F AGE SHP   +I   L ++  +M   G V DT  V +D+E++EKE  
Sbjct: 506 SYIEVHDRVHEFKAGEVSHPRHRDILYELMQIQRKMVEAGCVRDTRLVSYDLEEEEKENL 565

Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
           L +HSE+LA+  GL+ + PGT LRVVKNLRVC DCH  +K ISRI  R IVVRD  R+HH
Sbjct: 566 LTYHSEKLAIGLGLVTTRPGTELRVVKNLRVCSDCHTAIKFISRICGRRIVVRDCNRFHH 625

Query: 599 FKDGKCSCNDFW 610
           F+DG CSCND+W
Sbjct: 626 FEDGVCSCNDYW 637



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 172/363 (47%), Gaps = 43/363 (11%)

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +PD   +ASL++ C S  A  LG+ +H       F     + ++L+ MY  CG  + A+ 
Sbjct: 54  KPDLETYASLLRQCASARALDLGQLLHEEIARRRFDGYTFLGNTLITMYGSCGDVDRAKK 113

Query: 162 VFDSIKLK-NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            FD I  + N+VSW +M++ YA++   K+A+++F+   ++                N++ 
Sbjct: 114 AFDRIDSRNNTVSWNSMIAGYAQNAFSKEALKLFKAMDLQGF------------QPNKV- 160

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
              +F+                S + A  N   L  G  IH  V+    E+   ++ A++
Sbjct: 161 ---TFV----------------SALDAAGNLGALPEGSAIHEEVLEHDCETDTAVATALI 201

Query: 281 DMYAKC-----SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
           + + KC      D    + IF RMR +D VSW++++   AQ  Q   ++ L+ +M   G 
Sbjct: 202 NFFGKCPYCQSGDPHQVQAIFDRMRDRDDVSWSTLVGAYAQSNQHRTSMELFKKMDVEGY 261

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
           KP   TF+ ++ AC  +  + +GR L  S++ +  +   +     ++++  R G ++E+ 
Sbjct: 262 KPTRFTFMSVVDACGKLSALREGRVLHSSIM-NSALKWDVVLQNGIVNMFGRCGSVEESS 320

Query: 396 NLIKAMPFEPDEPTWAALLSACKH--HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453
           +  + M  + D  +W+ ++SA  H  H    + T +A +L    P D  +++ + +V A 
Sbjct: 321 SAFQEM-LQRDAVSWSIMISAFAHNGHGAEALETFLAMNLDGQTP-DELTFVSILSVCAH 378

Query: 454 AAM 456
           A +
Sbjct: 379 AGL 381


>gi|334186267|ref|NP_192012.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635642|sp|Q9SV26.2|PP297_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01030, mitochondrial; Flags: Precursor
 gi|332656570|gb|AEE81970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/612 (33%), Positives = 340/612 (55%), Gaps = 45/612 (7%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMP----QRDHVSWASILTAYNQANLPQKTISIFSTMLA 97
           N+++ +Y K   V  A  LL+EM     + D V+W S+L+ Y    L +  I++   M  
Sbjct: 159 NSILSSYTKLGYVDDAIGLLDEMEICGLKPDIVTWNSLLSGYASKGLSKDAIAVLKRM-Q 217

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
           +  L+P     +SL++A    G  +LGK +H   + +    D  V+++L+DMY K G   
Sbjct: 218 IAGLKPSTSSISSLLQAVAEPGHLKLGKAIHGYILRNQLWYDVYVETTLIDMYIKTGYLP 277

Query: 158 NARAVFDSIKLKN-----------------------------------SVSWTAMLSAYA 182
            AR VFD +  KN                                   +++W ++ S YA
Sbjct: 278 YARMVFDMMDAKNIVAWNSLVSGLSYACLLKDAEALMIRMEKEGIKPDAITWNSLASGYA 337

Query: 183 RSGRKKDAMEIF----EQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDP 238
             G+ + A+++     E+    N+  WTA+ SG  ++ N  +A   FI+M+ EGV   + 
Sbjct: 338 TLGKPEKALDVIGKMKEKGVAPNVVSWTAIFSGCSKNGNFRNALKVFIKMQEEGVG-PNA 396

Query: 239 LVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
             +S+++      ++L  GK++HG  +        +++ A+VDMY K  D+ +A +IF  
Sbjct: 397 ATMSTLLKILGCLSLLHSGKEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWG 456

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
           ++ K + SW  +++G A  G+ EE +A +  M+ AG++P+ +TF  ++  C + GLV +G
Sbjct: 457 IKNKSLASWNCMLMGYAMFGRGEEGIAAFSVMLEAGMEPDAITFTSVLSVCKNSGLVQEG 516

Query: 359 RKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACK 418
            K F  M   YGI P+++H +C++DLL RSG+LDEA + I+ M  +PD   W A LS+CK
Sbjct: 517 WKYFDLMRSRYGIIPTIEHCSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSSCK 576

Query: 419 HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGY 478
            HR+ E+       L  L+P + ++Y+++ N+Y++   W+ V ++R LM    V+ +  +
Sbjct: 577 IHRDLELAEIAWKRLQVLEPHNSANYMMMINLYSNLNRWEDVERIRNLMRNNRVRVQDLW 636

Query: 479 SYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQ 538
           S+I+  +  HIFYA   +HP + +I+  L +L +EMK+ GYVPDTS +  D+   EKE+ 
Sbjct: 637 SWIQIDQTVHIFYAEGKTHPDEGDIYFELYKLVSEMKKSGYVPDTSCIHQDISDSEKEKL 696

Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
           L  H+E+LA+ YGL+K      +RVVKN  +C D H V K +S +  REIV+++  R HH
Sbjct: 697 LMGHTEKLAMTYGLIKKKGLAPIRVVKNTNICSDSHTVAKYMSVLRNREIVLQEGARVHH 756

Query: 599 FKDGKCSCNDFW 610
           F+DGKCSCND W
Sbjct: 757 FRDGKCSCNDSW 768



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 195/400 (48%), Gaps = 13/400 (3%)

Query: 24  TLHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           T+H  +IK GL      + +  +  YG+C  + +A+ L +EMP+RD ++W  I+    ++
Sbjct: 8   TIHGGLIKRGLDNSDTRVVSASMGFYGRCVSLGFANKLFDEMPKRDDLAWNEIVMVNLRS 67

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV- 141
              +K + +F  M      +        L++ C +      G+Q+H  +VL    + +V 
Sbjct: 68  GNWEKAVELFREM-QFSGAKAYDSTMVKLLQVCSNKEGFAEGRQIHG-YVLRLGLESNVS 125

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV-- 199
           + +SL+ MY++ G    +R VF+S+K +N  SW ++LS+Y + G   DA+ + ++  +  
Sbjct: 126 MCNSLIVMYSRNGKLELSRKVFNSMKDRNLSSWNSILSSYTKLGYVDDAIGLLDEMEICG 185

Query: 200 --RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
              ++  W +L+SG        DA      M+  G+      + SS++ A A    L+LG
Sbjct: 186 LKPDIVTWNSLLSGYASKGLSKDAIAVLKRMQIAGLKPSTSSI-SSLLQAVAEPGHLKLG 244

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           K IHG ++       +++   ++DMY K   +  A+ +F  M  K++V+W S++ G +  
Sbjct: 245 KAIHGYILRNQLWYDVYVETTLIDMYIKTGYLPYARMVFDMMDAKNIVAWNSLVSGLSYA 304

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
              ++  AL   M   G+KP+ +T+  L    + +G   K   +   M E  G+ P++  
Sbjct: 305 CLLKDAEALMIRMEKEGIKPDAITWNSLASGYATLGKPEKALDVIGKMKEK-GVAPNVVS 363

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFE---PDEPTWAALL 414
           +T +    S++G+   A  +   M  E   P+  T + LL
Sbjct: 364 WTAIFSGCSKNGNFRNALKVFIKMQEEGVGPNAATMSTLL 403



 Score = 47.0 bits (110), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 72/163 (44%), Gaps = 9/163 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H   ++  L     +   L+D YGK   +Q A  +   +  +   SW  +L  Y   
Sbjct: 416 KEVHGFCLRKNLICDAYVATALVDMYGKSGDLQSAIEIFWGIKNKSLASWNCMLMGYAMF 475

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ----VHACFVLSPFCD 138
              ++ I+ FS ML    ++PD   F S++  C + G  + G +    + + + + P  +
Sbjct: 476 GRGEEGIAAFSVMLEAG-MEPDAITFTSVLSVCKNSGLVQEGWKYFDLMRSRYGIIPTIE 534

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA 180
                S +VD+  + G  + A     ++ LK ++  W A LS+
Sbjct: 535 H---CSCMVDLLGRSGYLDEAWDFIQTMSLKPDATIWGAFLSS 574


>gi|297823173|ref|XP_002879469.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297325308|gb|EFH55728.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 583

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/593 (33%), Positives = 331/593 (55%), Gaps = 38/593 (6%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           ++ +HA +I     +   L   LI        + Y H L   +P  D   + S++ + ++
Sbjct: 25  LQQVHAHLIVTSYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSK 84

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
             LP   ++ +  ML+   + P ++ F S++K+C  L A ++GK VH   V+S F  D  
Sbjct: 85  LRLPLHCVAYYRRMLS-SNVSPSNYTFTSVIKSCADLSALKIGKGVHCHAVVSGFGLDTY 143

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V+++LV  Y+KCG    AR                               ++F++ P ++
Sbjct: 144 VQAALVTFYSKCGDMEAAR-------------------------------QVFDRMPEKS 172

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           +  W +LVSG  Q+    DA   F +MR  G +  D     S++ ACA    + LG  +H
Sbjct: 173 VVAWNSLVSGFEQNGLAEDAIRVFYQMRESGFE-PDSATFVSLLSACAQTGAISLGSWVH 231

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             +++ G +  + +  A++++Y++C D+  A+++F +M+  +V +WT++I     HG  +
Sbjct: 232 QYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGK 291

Query: 322 ETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           + + L+++M    G  PN VTFV ++ AC+H GLV  GR ++K M E Y + P ++H+ C
Sbjct: 292 QAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGRSVYKRMTESYRLIPGVEHHVC 351

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPT---WAALLSACKHHRNTEMGTRVANHLLSLK 437
           ++D+L R+G LDEA   I+ +    +      W A+L ACK HRN ++G  +A  L++L+
Sbjct: 352 IVDMLGRAGFLDEAYRFIQQLDATGNATAPALWTAMLGACKMHRNYDLGVEIAKRLIALE 411

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
           PE+P  +++LSN+YA +     VS +R  M    ++K+ GYS IE    +++F  G+ SH
Sbjct: 412 PENPGHHVMLSNIYALSGKTDEVSHIRDRMMRNNLRKQVGYSIIEVENKTYLFSMGDESH 471

Query: 498 PLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVP 557
               EI+  L  L +  K  GY P +  V+H +E++EKE  L +HSE+LAVA+GLLK+V 
Sbjct: 472 QETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD 531

Query: 558 GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            + + VVKNLR+C DCH   K IS ++ R+I+VRD  R+HHF++G CSC D+W
Sbjct: 532 -SAITVVKNLRICEDCHSAFKYISIVSNRQIIVRDKLRFHHFQNGSCSCLDYW 583



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/183 (22%), Positives = 78/183 (42%), Gaps = 11/183 (6%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L  CA+         +H  I+  GL     L   LI+ Y +C  V  A  + ++M 
Sbjct: 211 FVSLLSACAQTGAISLGSWVHQYIVSEGLDVNVKLGTALINLYSRCGDVGKAREVFDKMK 270

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           + +  +W ++++AY      ++ + +F+ M       P++  F +++ AC   G    G+
Sbjct: 271 ETNVAAWTAMISAYGTHGYGKQAVDLFNKMEDDCGSIPNNVTFVAVLSACAHAGLVEDGR 330

Query: 126 QVHA----CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS----WTAM 177
            V+      + L P  +  V    +VDM  + G  + A      +    + +    WTAM
Sbjct: 331 SVYKRMTESYRLIPGVEHHVC---IVDMLGRAGFLDEAYRFIQQLDATGNATAPALWTAM 387

Query: 178 LSA 180
           L A
Sbjct: 388 LGA 390


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 206/582 (35%), Positives = 324/582 (55%), Gaps = 40/582 (6%)

Query: 36  QYGPLPN------TLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTI 89
           ++G LP+        +D Y K   +  A  L +EMP R+ V+W +++T       P +T+
Sbjct: 148 RFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETV 207

Query: 90  SIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDM 149
             +  +     + P+     +   AC  +    LG+Q +       F  D  V +S+VD 
Sbjct: 208 EAYFGLRGAGGM-PNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCGFGKDVSVSNSVVDF 266

Query: 150 YAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALV 209
           Y KC     ARAVFD + ++N+VS                               W ++V
Sbjct: 267 YGKCRCVGKARAVFDGMGVRNNVS-------------------------------WCSMV 295

Query: 210 SGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGY 269
               Q+  E +AF+ ++  RR G +  D +V SS++  CA    L+LG+ +H + +    
Sbjct: 296 VAYAQNGAEEEAFFVYLGARRAGEEPTDFMV-SSVLTTCAGLLGLDLGRALHAVAVRSCI 354

Query: 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDE 329
           +S +F+++A+VDMY KC  I  A+ +F  M ++++V+W ++I G A  G A   L+++D+
Sbjct: 355 DSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDK 414

Query: 330 MVSAG-VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRS 388
           M+      PN +T V ++ ACS  GL  +G +LF++M   +GI P ++HY C++DLL R+
Sbjct: 415 MIMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRA 474

Query: 389 GHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLS 448
           G  + A  +I+ MP  P    W ALL  CK H  TE+G   A  L  L P+D  +++LLS
Sbjct: 475 GMEERAYKIIQGMPMRPSISVWGALLGGCKMHGKTELGRIAAEKLFELDPQDSGNHVLLS 534

Query: 449 NVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLT 508
           N+ ASA  W   + VRK M  + +KK+PG S+I +    H+F A +T+H +  EI  LL 
Sbjct: 535 NMLASAGRWAEATDVRKEMKNVGIKKDPGRSWITWKNVVHVFQAKDTTHDMNREIQALLA 594

Query: 509 ELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLR 568
           +L  +M+  GY+PDT   L+D+E++EKE ++F HSE+LA+A+GL+   PG  +R++KNLR
Sbjct: 595 KLKGQMQAAGYMPDTQYALYDLEEEEKESEVFQHSEKLALAFGLICIPPGIPIRIMKNLR 654

Query: 569 VCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +C DCH   K IS I  REI+VRD   +HHFK+ +CSC D+W
Sbjct: 655 ICVDCHRAFKFISGIAGREIIVRDNNMFHHFKNYECSCKDYW 696



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 196/433 (45%), Gaps = 43/433 (9%)

Query: 23  KTLHAQIIKLGLHQYGP-LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           +  HA+ ++L      P L   L++ Y K DL   A   L   P    VS+ + ++   Q
Sbjct: 37  RAAHARALRLLSPALPPFLCAHLVNLYSKLDLPGAAAASLAADPSPTVVSYTAFISGAAQ 96

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVK-ACGSLGATRLGKQVHACFVLSPFCDDD 140
              P + +S F+ ML L  L+P+ F F S  K A  +   +  G Q+HA  +   +  DD
Sbjct: 97  HARPLQALSAFAAMLRLG-LRPNDFTFPSAFKAAASAPPRSAAGTQLHALALRFGYLPDD 155

Query: 141 V-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
             V  + +DMY K G    AR +FD +  +N V+W A+++     GR  + +E       
Sbjct: 156 AFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVLDGRPLETVE------- 208

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
                                   ++  +R  G  + + + + +   ACA    L LG+Q
Sbjct: 209 ------------------------AYFGLRGAG-GMPNVVSVCAFFNACAGMTNLSLGEQ 243

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
            +G V   G+   + +SN++VD Y KC  +  A+ +F  M  ++ VSW S++V  AQ+G 
Sbjct: 244 FYGFVAKCGFGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGA 303

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG--KGRKLFKSMIEDYGITPSLQH 377
            EE   +Y     AG +P +     ++  C+  GL+G   GR L    +    I  ++  
Sbjct: 304 EEEAFFVYLGARRAGEEPTDFMVSSVLTTCA--GLLGLDLGRALHAVAVRSC-IDSNIFV 360

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
            + L+D+  + G +++AE +   MP + +  TW A++    H  +      V + ++ + 
Sbjct: 361 ASALVDMYGKCGGIEDAEQVFFEMP-QRNLVTWNAMIGGYAHIGDAHNALSVFDKMI-MG 418

Query: 438 PEDPSSYILLSNV 450
            E   +YI L NV
Sbjct: 419 QETAPNYITLVNV 431



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/266 (22%), Positives = 111/266 (41%), Gaps = 16/266 (6%)

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
           P   +  +TA +SG  Q    + A  +F  M R G+   D    S+   A +       G
Sbjct: 80  PSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAASAPPRSAAG 139

Query: 258 KQIHGLVIALGY-ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
            Q+H L +  GY     F+S A +DMY K   +  A+ +F  M  ++VV+W +++     
Sbjct: 140 TQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAVL 199

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
            G+  ET+  Y  +  AG  PN V+      AC+ +  +  G + F   +   G    + 
Sbjct: 200 DGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQ-FYGFVAKCGFGKDVS 258

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTE------MGTRVA 430
               ++D   +   + +A  +   M    +  +W +++ A   +   E      +G R A
Sbjct: 259 VSNSVVDFYGKCRCVGKARAVFDGMGVR-NNVSWCSMVVAYAQNGAEEEAFFVYLGARRA 317

Query: 431 NHLLSLKPEDPSSYILLSNVYASAAM 456
                   E+P+ +++ S +   A +
Sbjct: 318 G-------EEPTDFMVSSVLTTCAGL 336



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 87/185 (47%), Gaps = 12/185 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHA  ++  +     + + L+D YGKC  ++ A  +  EMPQR+ V+W +++  Y   
Sbjct: 343 RALHAVAVRSCIDSNIFVASALVDMYGKCGGIEDAEQVFFEMPQRNLVTWNAMIGGYAHI 402

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHAC----FVLSPFCD 138
                 +S+F  M+   +  P++    +++ AC   G T+ G ++       F + P  +
Sbjct: 403 GDAHNALSVFDKMIMGQETAPNYITLVNVLTACSRGGLTKEGYELFQTMKWRFGIEPRIE 462

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGRKK----DAMEI 193
                + +VD+  + G+   A  +   + ++ S+S W A+L      G+ +     A ++
Sbjct: 463 H---YACVVDLLCRAGMEERAYKIIQGMPMRPSISVWGALLGGCKMHGKTELGRIAAEKL 519

Query: 194 FEQAP 198
           FE  P
Sbjct: 520 FELDP 524


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/514 (38%), Positives = 303/514 (58%), Gaps = 9/514 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA  + + T + +HA + K        +   L+D Y KC+  + A  + + MP+R+ 
Sbjct: 154 LSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNI 213

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S++T Y Q     + +++F  M+  D   PD    AS++ AC  L A R G+QVH 
Sbjct: 214 VSWNSLITCYEQNGPVDEALALFVRMMK-DGFVPDEVTLASVMSACAGLAAGREGRQVHT 272

Query: 130 CFVLSP-FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
             V S  F +D V+ ++LVDMYAKCG    A+ VFD + +++ VS T+M++ YA+S    
Sbjct: 273 RMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVG 332

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           DA  +F Q   +N+  W  L++    +  E +A   F+ ++RE V         +++ AC
Sbjct: 333 DAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESV-WPTHYTYGNVLNAC 391

Query: 249 ANFAVLELGKQIHGLVIALGY------ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
           AN A L+LG+Q H  V+  G+      ES +F+ N++VDMY K   I     +F RM  +
Sbjct: 392 ANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAAR 451

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           D VSW ++IVG AQ+G+A++ L L++ M+ +  +P+ VT +G++ AC H GLV +GR+ F
Sbjct: 452 DNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGRRYF 511

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
           +SM ED+GI P+  HYTC++DLL R+GHL E E LI+ MP EPD   WA+LL AC+ H+N
Sbjct: 512 QSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLWASLLGACRLHKN 571

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
            +MG   A  L  L P++   Y+LLSN+YA    W  V +VR+ M    V K+PG S+IE
Sbjct: 572 IDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKHRGVSKQPGCSWIE 631

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKR 516
            G+  ++F A +  HP ++EI + L  +  +M R
Sbjct: 632 IGRKVNVFLARDNIHPCRNEIHDTLRIIQMQMSR 665



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 142/268 (52%), Gaps = 1/268 (0%)

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
           SPF  +  + ++L+  YA+ G  ++AR VFD +  +N+ S+ A+LSA AR GR  DA+ +
Sbjct: 44  SPFAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALAL 103

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
           F   P  +   + A+V+ L Q     DA      M  +   +++    +S + ACA+   
Sbjct: 104 FGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMHADDF-VLNAYSFASALSACASEKA 162

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
              G+Q+H LV    + S ++I  A+VDMYAKC     A+ +F  M  +++VSW S+I  
Sbjct: 163 SRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITC 222

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
             Q+G  +E LAL+  M+  G  P+EVT   ++ AC+ +    +GR++   M++      
Sbjct: 223 YEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFRE 282

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAM 401
            +     L+D+ ++ G   EA+ +   M
Sbjct: 283 DMVLNNALVDMYAKCGRTWEAKCVFDRM 310



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/442 (24%), Positives = 193/442 (43%), Gaps = 100/442 (22%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L NTL+ AY +   +  A  + + MP R+  S+ ++L+A  +       +++F  +   D
Sbjct: 52  LLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDPD 111

Query: 100 K-------------------------LQPDHFV-----FASLVKACGSLGATRLGKQVHA 129
           +                         +  D FV     FAS + AC S  A+R G+QVHA
Sbjct: 112 QCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHA 171

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
               S    D  + ++LVDMYAKC  P  A+ VFD++  +N VSW ++++ Y ++G   +
Sbjct: 172 LVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDE 231

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+ +                               F+ M ++G  + D + L+S++ ACA
Sbjct: 232 ALAL-------------------------------FVRMMKDGF-VPDEVTLASVMSACA 259

Query: 250 NFAVLELGKQIHG-LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
             A    G+Q+H  +V +  +   + ++NA+VDMYAKC     AK +F RM  + VVS T
Sbjct: 260 GLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSET 319

Query: 309 SIIVGTAQ-------------------------------HGQAEETLALYDEMVSAGVKP 337
           S+I G A+                               + + EE L L+  +    V P
Sbjct: 320 SMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWP 379

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIE-----DYGITPSLQHYTCLLDLLSRSGHLD 392
              T+  ++ AC+++  +  G++    +++     D G    +     L+D+  ++G + 
Sbjct: 380 THYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSIS 439

Query: 393 EAENLIKAMPFEPDEPTWAALL 414
           +   + + M    D  +W A++
Sbjct: 440 DGAKVFERMAAR-DNVSWNAMI 460


>gi|357519251|ref|XP_003629914.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523936|gb|AET04390.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/576 (34%), Positives = 314/576 (54%), Gaps = 44/576 (7%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +++ Y     V  A  L  +MP RD +SW SI+   ++     + +  F  M+    +
Sbjct: 189 NAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMVGFSGV 248

Query: 102 QPDHFVFASLVKACGSLGATRL-----GKQVHACFVLSPFCD--DDVVKSSLVDMYAKCG 154
                  +S    CG   A ++     G Q+H C     FC   D+ V +SLV  YA C 
Sbjct: 249 G-----ISSTTLVCGLSAAAKILDFYAGIQIHCCMFKFGFCCGLDEFVSASLVTFYASCK 303

Query: 155 LPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
                                          R  DA ++F +   +N+ +WTAL++G   
Sbjct: 304 -------------------------------RMGDACKVFGETVCKNVVVWTALLTGCGL 332

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLF 274
           +   ++A   F EM R  V + +    +S + +C     LE G+ IH   I +G E+ ++
Sbjct: 333 NDKHVEALEVFSEMMRFNV-VPNESSFTSALNSCVGLEDLEKGRVIHAAGIKMGLENAVY 391

Query: 275 ISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG 334
             N++V MY+KC  I  A  +F  +  K+VVSW S+IVG AQHG     L L+ EM+  G
Sbjct: 392 TGNSLVVMYSKCGFIGDALCVFKGICEKNVVSWNSVIVGCAQHGCGTWALVLFKEMLREG 451

Query: 335 VKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
           V+ +E+T  GL+ ACS  G++ K R  F        +  +++HY C++D+L R G ++EA
Sbjct: 452 VESDEITLTGLLSACSRSGMLQKARCFFGYFARKRSMKLTVEHYACMVDVLGRCGEVEEA 511

Query: 395 ENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASA 454
           E L  +MP E +   W  LLSAC+ H + ++  R A  +  ++P+  ++Y+LLSN+YAS+
Sbjct: 512 EALATSMPVEANSMVWLVLLSACRVHSSLDVAERAAKRIFEMEPDCSAAYVLLSNLYASS 571

Query: 455 AMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEM 514
             W  V+++R  M    + K+PG S+I      H F + + SHPL +EI+E L  L  ++
Sbjct: 572 RRWLEVARIRMKMKHNGIVKQPGSSWITLKGMRHEFLSADRSHPLTEEIYEKLVWLGVKL 631

Query: 515 KRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCH 574
           +  GY+PD    LHD+E ++ E  L +HSERLA+A+GLL +V G+ + ++KNLRVCGDCH
Sbjct: 632 RELGYIPDQQFALHDVEIEQNEEMLSYHSERLAIAFGLLSTVEGSTITIMKNLRVCGDCH 691

Query: 575 IVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             + ++++I  REIVVRD++R+HHFK+G CSC D+W
Sbjct: 692 TAITLMAKIVNREIVVRDSSRFHHFKNGICSCGDYW 727



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 178/374 (47%), Gaps = 25/374 (6%)

Query: 57  AHHLLEEMPQRDHVS-WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKA- 114
           A  +  ++P   HVS +  +L AY   N   + I++F+ + +  K   D   + S++KA 
Sbjct: 76  ARAVFNKIPS-PHVSLYTKLLLAYAHNNNLHEAINLFNQIPSNTK---DTISWNSVIKAS 131

Query: 115 --CGS-LGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL--K 169
             C   + A +L  ++           + +  ++++  +   G  N A   F+++    K
Sbjct: 132 IICNDFVTAVKLFDEMPQ--------RNSISWTTIIHGFLSTGRVNEAERFFNAMPYVDK 183

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM- 228
           +  +W AM++ Y  +GR  DA+ +F Q P R++  WT+++ GL ++     A + F  M 
Sbjct: 184 DVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMV 243

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL--FISNAIVDMYAKC 286
              GV I    ++  +  A A       G QIH  +   G+   L  F+S ++V  YA C
Sbjct: 244 GFSGVGISSTTLVCGLSAA-AKILDFYAGIQIHCCMFKFGFCCGLDEFVSASLVTFYASC 302

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             +  A  +FG    K+VV WT+++ G   + +  E L ++ EM+   V PNE +F   +
Sbjct: 303 KRMGDACKVFGETVCKNVVVWTALLTGCGLNDKHVEALEVFSEMMRFNVVPNESSFTSAL 362

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            +C  +  + KGR +  + I+  G+  ++     L+ + S+ G + +A  + K +  E +
Sbjct: 363 NSCVGLEDLEKGRVIHAAGIK-MGLENAVYTGNSLVVMYSKCGFIGDALCVFKGIC-EKN 420

Query: 407 EPTWAALLSACKHH 420
             +W +++  C  H
Sbjct: 421 VVSWNSVIVGCAQH 434



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 62/269 (23%), Positives = 122/269 (45%), Gaps = 20/269 (7%)

Query: 157 NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAP--VRNLFLWTALVSGLVQ 214
           ++ARAVF+ I   +   +T +L AYA +    +A+ +F Q P   ++   W +++   + 
Sbjct: 74  DSARAVFNKIPSPHVSLYTKLLLAYAHNNNLHEAINLFNQIPSNTKDTISWNSVIKASII 133

Query: 215 SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGK--QIHGLVIALGY-ES 271
             + + A   F EM +      + +  ++I+        L  G+  +      A+ Y + 
Sbjct: 134 CNDFVTAVKLFDEMPQR-----NSISWTTII-----HGFLSTGRVNEAERFFNAMPYVDK 183

Query: 272 CLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
            +   NA+V+ Y     +  A  +F +M  +DV+SWTSIIVG  ++G++ + L  +  MV
Sbjct: 184 DVATWNAMVNGYCNNGRVNDALRLFCQMPSRDVISWTSIIVGLDRNGKSYQALFFFKNMV 243

Query: 332 S-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT--CLLDLLSRS 388
             +GV  +  T V  + A + +     G ++   M + +G    L  +    L+   +  
Sbjct: 244 GFSGVGISSTTLVCGLSAAAKILDFYAGIQIHCCMFK-FGFCCGLDEFVSASLVTFYASC 302

Query: 389 GHLDEAENLIKAMPFEPDEPTWAALLSAC 417
             + +A  +      + +   W ALL+ C
Sbjct: 303 KRMGDACKVFGETVCK-NVVVWTALLTGC 330



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 83/187 (44%), Gaps = 17/187 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA  IK+GL       N+L+  Y KC  +  A  + + + +++ VSW S++    Q 
Sbjct: 375 RVIHAAGIKMGLENAVYTGNSLVVMYSKCGFIGDALCVFKGICEKNVVSWNSVIVGCAQH 434

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 + +F  ML  + ++ D      L+ AC   G  +  +    CF    F     +
Sbjct: 435 GCGTWALVLFKEMLR-EGVESDEITLTGLLSACSRSGMLQKAR----CF-FGYFARKRSM 488

Query: 143 K------SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSA----YARSGRKKDAM 191
           K      + +VD+  +CG    A A+  S+ ++ NS+ W  +LSA     +    ++ A 
Sbjct: 489 KLTVEHYACMVDVLGRCGEVEEAEALATSMPVEANSMVWLVLLSACRVHSSLDVAERAAK 548

Query: 192 EIFEQAP 198
            IFE  P
Sbjct: 549 RIFEMEP 555


>gi|356531902|ref|XP_003534515.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g23330-like [Glycine max]
          Length = 1011

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/637 (33%), Positives = 344/637 (54%), Gaps = 47/637 (7%)

Query: 5    HYLHRLRVCARHQIALTV-KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
            + L  L  C    I L + K +HA +++ G+     L N+++D Y KC + +YA  + E 
Sbjct: 391  YTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLGNSILDLYLKCKVFEYAERVFEL 450

Query: 64   MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV-----FASLVKA---- 114
            M + D VSW  +++AY +A   +K++ +F  +   D +  +  V     F    +A    
Sbjct: 451  MNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLMQFGYERQALEQL 510

Query: 115  -----CGS----------------LGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKC 153
                 CG+                L    LG+Q+H   +   FC D  ++SSLV+MY KC
Sbjct: 511  YCMVECGTEFSVVTFSIALILSSSLSLVELGRQLHGMVLKFGFCRDGFIRSSLVEMYCKC 570

Query: 154  GLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLV 213
            G  +NA  V   + L            + ++G      +  +   V     W  +VSG V
Sbjct: 571  GRMDNASIVLKDVPLD-----------FLKNGNAGVTCKELKAGIVS----WGLMVSGYV 615

Query: 214  QSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCL 273
             +    D   +F  M RE V +VD   +++I+ ACAN  +LE G+ +H     +G+    
Sbjct: 616  WNGKYEDGLKTFRLMVRELV-VVDIRTVTTIISACANAGILEFGRHVHAYNHKIGHRIDA 674

Query: 274  FISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSA 333
            ++ ++++DMY+K   +  A  IF +    ++V WTS+I G A HGQ ++ + L++EM++ 
Sbjct: 675  YVGSSLIDMYSKSGSLDDAWTIFRQTNEPNIVFWTSMISGCALHGQGKQAICLFEEMLNQ 734

Query: 334  GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDE 393
            G+ PNEVTF+G++ AC H GL+ +G + F+ M + Y I P ++H T ++DL  R+GHL E
Sbjct: 735  GIIPNEVTFLGVLNACCHAGLLEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTE 794

Query: 394  AENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYAS 453
             +N I           W + LS+C+ H+N EMG  V+  LL + P DP +Y+LLSN+ AS
Sbjct: 795  TKNFIFENGISHLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCAS 854

Query: 454  AAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAE 513
               W   ++VR LM    +KK+PG S+I+     H F  G+ SHP  +EI+  L  L   
Sbjct: 855  NHRWDEAARVRSLMHQRGIKKQPGQSWIQLKDQIHTFIMGDRSHPQDEEIYSYLDILIGR 914

Query: 514  MKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDC 573
            +K  GY  D   V+ D+E+++ E  +  HSE+LAV +G++ +   T +R++KNLR+C DC
Sbjct: 915  LKEIGYSFDVKLVMQDVEEEQGEVLISHHSEKLAVVFGIINTANRTPIRIIKNLRICTDC 974

Query: 574  HIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            H  +K  S++  REI++RD  R+HHFK G CSC D+W
Sbjct: 975  HNFIKYASQLLDREIILRDIHRFHHFKHGGCSCGDYW 1011



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 115/418 (27%), Positives = 210/418 (50%), Gaps = 30/418 (7%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQAN 83
           TLHA  +K G  Q     N L+  Y K   + +A  L +E+PQR+  +W  +++ +++A 
Sbjct: 310 TLHALSVKNGSLQTLNSANYLLTLYVKSSNMDHARKLFDEIPQRNTQTWTILISGFSRAG 369

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
             +    +F  M A     P+ +  +SL K C      +LGK VHA  + +    D V+ 
Sbjct: 370 SSEVVFKLFREMRAKGAC-PNQYTLSSLFKCCSLDINLQLGKGVHAWMLRNGIDADVVLG 428

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           +S++D+Y KC +   A  VF+ +   + VSW  M+SAY R+G  + ++++F + P +++ 
Sbjct: 429 NSILDLYLKCKVFEYAERVFELMNEGDVVSWNIMISAYLRAGDVEKSLDMFRRLPYKDVV 488

Query: 204 LWTALVSGLVQ---SRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
            W  +V GL+Q    R  ++  Y  +E   E       +  S  +   ++ +++ELG+Q+
Sbjct: 489 SWNTIVDGLMQFGYERQALEQLYCMVECGTE----FSVVTFSIALILSSSLSLVELGRQL 544

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDI----IAAKD------------IFGRMRRKDV 304
           HG+V+  G+    FI +++V+MY KC  +    I  KD            +  +  +  +
Sbjct: 545 HGMVLKFGFCRDGFIRSSLVEMYCKCGRMDNASIVLKDVPLDFLKNGNAGVTCKELKAGI 604

Query: 305 VSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKS 364
           VSW  ++ G   +G+ E+ L  +  MV   V  +  T   +I AC++ G++  GR +   
Sbjct: 605 VSWGLMVSGYVWNGKYEDGLKTFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHA- 663

Query: 365 MIEDYGITPSLQHY--TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
              ++ I   +  Y  + L+D+ S+SG LD+A  + +    EP+   W +++S C  H
Sbjct: 664 --YNHKIGHRIDAYVGSSLIDMYSKSGSLDDAWTIFRQTN-EPNIVFWTSMISGCALH 718


>gi|356528388|ref|XP_003532785.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46460,
           mitochondrial-like [Glycine max]
          Length = 721

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/571 (35%), Positives = 325/571 (56%), Gaps = 36/571 (6%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +I  Y     V  A  L  +MP RD +SW+S++   +     ++ + +F  M+A    
Sbjct: 185 NAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGVC 244

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVH-ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNAR 160
                +   L  A   + A R+G Q+H + F L  +  D+ V +SLV  YA C       
Sbjct: 245 LSSGVLVCGL-SAAAKIPAWRVGIQIHCSVFKLGDWHFDEFVSASLVTFYAGCK------ 297

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
                                    + + A  +F +   +++ +WTAL++G   +    +
Sbjct: 298 -------------------------QMEAACRVFGEVVYKSVVIWTALLTGYGLNDKHRE 332

Query: 221 AFYSFIEMRREGVDIV-DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAI 279
           A   F EM R  +D+V +    +S + +C     +E GK IH   + +G ES  ++  ++
Sbjct: 333 ALEVFGEMMR--IDVVPNESSFTSALNSCCGLEDIERGKVIHAAAVKMGLESGGYVGGSL 390

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           V MY+KC  +  A  +F  +  K+VVSW S+IVG AQHG     LAL+++M+  GV P+ 
Sbjct: 391 VVMYSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQHGCGMWALALFNQMLREGVDPDG 450

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           +T  GL+ ACSH G++ K R  F+   +   +T +++HYT ++D+L R G L+EAE ++ 
Sbjct: 451 ITVTGLLSACSHSGMLQKARCFFRYFGQKRSVTLTIEHYTSMVDVLGRCGELEEAEAVVM 510

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
           +MP + +   W ALLSAC+ H N ++  R AN +  ++P+  ++Y+LLSN+YAS++ W  
Sbjct: 511 SMPMKANSMVWLALLSACRKHSNLDLAKRAANQIFEIEPDCSAAYVLLSNLYASSSRWAE 570

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
           V+ +R+ M    V K+PG S++      H F + + SHPL ++I++ L  L  ++K  GY
Sbjct: 571 VALIRRKMKHNGVVKKPGSSWLTLKGQKHKFLSADRSHPLAEKIYQKLEWLGVKLKELGY 630

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
           VPD    LHD+E ++KE  L +HSERLA+A+GLL +V G+ + V+KNLRVCGDCH  +K+
Sbjct: 631 VPDQQFALHDVETEQKEEMLSYHSERLAIAFGLLSTVEGSAITVMKNLRVCGDCHNAIKL 690

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +++I  REIVVRD++R+H FK+G CSC D+W
Sbjct: 691 MAKIVDREIVVRDSSRFHDFKNGICSCGDYW 721



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 96/415 (23%), Positives = 181/415 (43%), Gaps = 50/415 (12%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L   ++ AY +   ++ A  L   +P +D VSW SI+                       
Sbjct: 88  LYTIMLHAYAQNHRLREAIDLFRRIPFKDVVSWNSIIK---------------------- 125

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNN 158
                              G    G  V A  +        VV  ++LVD   + G+   
Sbjct: 126 -------------------GCLHCGDIVTARKLFDEMPRRTVVSWTTLVDGLLRLGIVQE 166

Query: 159 ARAVFDSIKL--KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
           A  +F +++   ++  +W AM+  Y  +GR  DA+++F Q P R++  W+++++GL  + 
Sbjct: 167 AETLFWAMEPMDRDVAAWNAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNG 226

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG-YESCLFI 275
               A   F +M   GV +   +++  +  A A      +G QIH  V  LG +    F+
Sbjct: 227 KSEQALVLFRDMVASGVCLSSGVLVCGL-SAAAKIPAWRVGIQIHCSVFKLGDWHFDEFV 285

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
           S ++V  YA C  + AA  +FG +  K VV WT+++ G   + +  E L ++ EM+   V
Sbjct: 286 SASLVTFYAGCKQMEAACRVFGEVVYKSVVIWTALLTGYGLNDKHREALEVFGEMMRIDV 345

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
            PNE +F   + +C  +  + +G+ +  + ++  G+         L+ + S+ G++ +A 
Sbjct: 346 VPNESSFTSALNSCCGLEDIERGKVIHAAAVK-MGLESGGYVGGSLVVMYSKCGYVSDAV 404

Query: 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPEDPSSYILLS 448
            + K +  E +  +W +++  C  H        + N +L   + P+  +   LLS
Sbjct: 405 YVFKGIN-EKNVVSWNSVIVGCAQHGCGMWALALFNQMLREGVDPDGITVTGLLS 458



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 97/179 (54%), Gaps = 7/179 (3%)

Query: 157 NNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
           + ARA+FD I   +   +T ML AYA++ R ++A+++F + P +++  W +++ G +   
Sbjct: 72  DEARAIFDQIPTPHVSLYTIMLHAYAQNHRLREAIDLFRRIPFKDVVSWNSIIKGCLHCG 131

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
           + + A   F EM R  V     +  +++V       +++  + +   +  +  +   +  
Sbjct: 132 DIVTARKLFDEMPRRTV-----VSWTTLVDGLLRLGIVQEAETLFWAMEPMDRDVAAW-- 184

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
           NA++  Y     +  A  +F +M  +DV+SW+S+I G   +G++E+ L L+ +MV++GV
Sbjct: 185 NAMIHGYCSNGRVDDALQLFCQMPSRDVISWSSMIAGLDHNGKSEQALVLFRDMVASGV 243



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 89/187 (47%), Gaps = 17/187 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HA  +K+GL   G +  +L+  Y KC  V  A ++ + + +++ VSW S++    Q 
Sbjct: 369 KVIHAAAVKMGLESGGYVGGSLVVMYSKCGYVSDAVYVFKGINEKNVVSWNSVIVGCAQH 428

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                 +++F+ ML  + + PD      L+ AC   G  +  +    CF    F     V
Sbjct: 429 GCGMWALALFNQMLR-EGVDPDGITVTGLLSACSHSGMLQKAR----CF-FRYFGQKRSV 482

Query: 143 K------SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARSGR----KKDAM 191
                  +S+VD+  +CG    A AV  S+ +K NS+ W A+LSA  +       K+ A 
Sbjct: 483 TLTIEHYTSMVDVLGRCGELEEAEAVVMSMPMKANSMVWLALLSACRKHSNLDLAKRAAN 542

Query: 192 EIFEQAP 198
           +IFE  P
Sbjct: 543 QIFEIEP 549


>gi|222622013|gb|EEE56145.1| hypothetical protein OsJ_05030 [Oryza sativa Japonica Group]
          Length = 742

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/609 (35%), Positives = 328/609 (53%), Gaps = 64/609 (10%)

Query: 24  TLHAQIIKLGLHQYGPLPNTLIDAYGK-------------------------------CD 52
           ++H Q+++LG   Y  + + L+D Y K                               C 
Sbjct: 167 SVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCK 226

Query: 53  LVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLV 112
           +++ A  L + M  RD ++W +++T   Q  L  + + +F  M A + +  D + F S++
Sbjct: 227 MIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEALDVFRRMRA-EGVGIDQYTFGSIL 285

Query: 113 KACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSV 172
            ACG+L A   GKQ+HA    + + D+  V S+LVDMY+KC     A AVF  +  +N +
Sbjct: 286 TACGALAALEEGKQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNII 345

Query: 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
           SWTAM+  Y ++   ++A+                                +F EM+ +G
Sbjct: 346 SWTAMIVGYGQNACSEEAVR-------------------------------AFSEMQMDG 374

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
           +   D   L S++ +CAN A LE G Q H L +  G    + +SNA+V +Y KC  I  A
Sbjct: 375 IK-PDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITVSNALVTLYGKCGSIEDA 433

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
             +F  M   D VSWT+++ G AQ G+A+ET+ L+++M++ G+KP+ VTF+G++ ACS  
Sbjct: 434 HRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEKMLANGLKPDGVTFIGVLSACSRA 493

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           GLV KG   F SM +D+GI P   HYTC++DL SRSG   EAE  IK MP  PD   WA 
Sbjct: 494 GLVEKGCDYFDSMQKDHGIVPIDDHYTCMIDLYSRSGRFKEAEEFIKQMPHSPDAFGWAT 553

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
           LLS+C+   N E+G   A +LL   P++P+SY+LL +++A+   W  V+ +R+ M   +V
Sbjct: 554 LLSSCRLRGNMEIGKWAAENLLETDPQNPASYVLLCSMHAAKGQWTEVAHLRRGMRDRQV 613

Query: 473 KKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQ 532
           KKEPG S+I++    HIF A + SHP    I+E L  L+++M   GY PD SSVLHD+  
Sbjct: 614 KKEPGCSWIKYKNKVHIFSADDQSHPFSSRIYEKLEWLNSKMAEEGYKPDVSSVLHDVAD 673

Query: 533 KEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRD 592
            +K   +  HSE+LA+A+GL+       +R+VKNLR       + + +SR   +E+ +  
Sbjct: 674 ADKVHMISHHSEKLAIAFGLIFVPQEMPIRIVKNLRGNLVYLTLQRRLSREEFKEVAIHT 733

Query: 593 ATRYHHFKD 601
              +   KD
Sbjct: 734 QRHWLGCKD 742



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/375 (31%), Positives = 199/375 (53%), Gaps = 3/375 (0%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N L+ A     LV     L   MP+RD VS+ +++T ++    P +++ ++  +L  + +
Sbjct: 83  NALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQLYRALLREESV 142

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
           +P     ++++    +L    LG  VH   +   F     V S LVDMYAK GL  +AR 
Sbjct: 143 RPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYAKMGLIRDARR 202

Query: 162 VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDA 221
           VF  ++ K  V +  +++   R    +DA  +F+    R+   WT +V+GL Q+  +++A
Sbjct: 203 VFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTGLTQNGLQLEA 262

Query: 222 FYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVD 281
              F  MR EGV I D     SI+ AC   A LE GKQIH  +    YE  +F+ +A+VD
Sbjct: 263 LDVFRRMRAEGVGI-DQYTFGSILTACGALAALEEGKQIHAYITRTWYEDNVFVGSALVD 321

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY+KC  I  A+ +F RM  ++++SWT++IVG  Q+  +EE +  + EM   G+KP++ T
Sbjct: 322 MYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQNACSEEAVRAFSEMQMDGIKPDDFT 381

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
              +I +C+++  + +G + F  +    G+   +     L+ L  + G +++A  L   M
Sbjct: 382 LGSVISSCANLASLEEGAQ-FHCLALVSGLMRYITVSNALVTLYGKCGSIEDAHRLFDEM 440

Query: 402 PFEPDEPTWAALLSA 416
            F  D+ +W AL++ 
Sbjct: 441 SFH-DQVSWTALVTG 454



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 140/307 (45%), Gaps = 47/307 (15%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HA I +        + + L+D Y KC  ++ A  +   M  R+ +SW +++  Y Q 
Sbjct: 298 KQIHAYITRTWYEDNVFVGSALVDMYSKCRSIRLAEAVFRRMTCRNIISWTAMIVGYGQN 357

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ +  FS M  +D ++PD F   S++ +C +L +   G Q H   ++S       V
Sbjct: 358 ACSEEAVRAFSEM-QMDGIKPDDFTLGSVISSCANLASLEEGAQFHCLALVSGLMRYITV 416

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LV +Y KCG   +A  +FD +   + VSWTA+++ YA+ G+ K+ +++FE+      
Sbjct: 417 SNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVTGYAQFGKAKETIDLFEK------ 470

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG----- 257
                L +GL                + +GV  +       ++ AC+   ++E G     
Sbjct: 471 ----MLANGL----------------KPDGVTFI------GVLSACSRAGLVEKGCDYFD 504

Query: 258 --KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSIIVGT 314
             ++ HG+V    + +C+      +D+Y++      A++   +M    D   W +++   
Sbjct: 505 SMQKDHGIVPIDDHYTCM------IDLYSRSGRFKEAEEFIKQMPHSPDAFGWATLLSSC 558

Query: 315 AQHGQAE 321
              G  E
Sbjct: 559 RLRGNME 565



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/373 (24%), Positives = 161/373 (43%), Gaps = 48/373 (12%)

Query: 109 ASLVKACGSLGAT--RLGKQVHACFVLSPFCD--DDVVKSSLVDMYAKCGLPNNARAVFD 164
           A L  A G  G T  R+   VH C +L  F       + + L+  YAK G    AR VFD
Sbjct: 14  AILSSAAGDGGRTGVRVAGAVH-CLILKTFLQAPPTFLLNHLLTAYAKSGRLARARRVFD 72

Query: 165 SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS 224
            +   N  +  A+LSA A S    D   +F   P R+   + AL++G   + +   +   
Sbjct: 73  EMPDPNLFTRNALLSALAHSRLVPDMERLFASMPERDAVSYNALITGFSSTGSPARSVQL 132

Query: 225 FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYA 284
           +  + RE       + LS+++   +  +   LG  +H  V+ LG+ +  F+ + +VDMYA
Sbjct: 133 YRALLREESVRPTRITLSAMIMVASALSDRALGHSVHCQVLRLGFGAYAFVGSPLVDMYA 192

Query: 285 K-------------------------------CSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           K                               C  I  AK +F  M  +D ++WT+++ G
Sbjct: 193 KMGLIRDARRVFQEMEAKTVVMYNTLITGLLRCKMIEDAKGLFQLMVDRDSITWTTMVTG 252

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF----KSMIEDY 369
             Q+G   E L ++  M + GV  ++ TF  ++ AC  +  + +G+++     ++  ED 
Sbjct: 253 LTQNGLQLEALDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTWYEDN 312

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
               S      L+D+ S+   +  AE + + M    +  +W A++     +  +E   R 
Sbjct: 313 VFVGS-----ALVDMYSKCRSIRLAEAVFRRMTCR-NIISWTAMIVGYGQNACSEEAVRA 366

Query: 430 ANHLL--SLKPED 440
            + +    +KP+D
Sbjct: 367 FSEMQMDGIKPDD 379


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 216/605 (35%), Positives = 327/605 (54%), Gaps = 51/605 (8%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP-QRDHVSWASILTAYNQAN 83
           +H   ++ G  ++  + ++L+  Y K   +  A  + +     R   +W ++++ Y  A 
Sbjct: 341 IHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAG 400

Query: 84  LPQKTISIFSTMLAL-----DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPF-- 136
             +  + +F  M        D+ QPD F FASL+KACG LGA R G QVHA    S F  
Sbjct: 401 HGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFST 460

Query: 137 CDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             + ++  +LVDMY KCG                               R   AM++FE+
Sbjct: 461 ASNAILAGALVDMYVKCG-------------------------------RLPVAMQVFER 489

Query: 197 APVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLEL 256
              +N   WT +V G  Q    ++A   F    R G    D  VLSSIVG  A+FA++E 
Sbjct: 490 LERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSGAR-ADAHVLSSIVGVLADFALVEQ 548

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           G+Q+H   +     + +   N+IVDMY KC     A+ +F  +  ++VVSWT++I G  +
Sbjct: 549 GRQVHCYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGK 608

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQ 376
           HG   E +A+++EM + GV+P+EVT++ L+ ACSH GLV + R+ F  +  D  + P  +
Sbjct: 609 HGLGREAVAMFEEMRAGGVEPDEVTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAE 668

Query: 377 HYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSL 436
           HY C++DLL R+G L EA +LI+ MP EP    W  LLSAC+ H++  +G    + LL++
Sbjct: 669 HYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAI 728

Query: 437 KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAG--E 494
             ++P +Y+ LSNV+A A  W+   KVR  M    +KK+ G S++E GK  H FY G  E
Sbjct: 729 DGDNPVNYVTLSNVFAEAGAWRECHKVRDAMRRRGLKKQGGCSWVEIGKEVHFFYGGGDE 788

Query: 495 TSHPLKDEIFELLTELDAEMKRR-GYVP-DTSSVLHDMEQKEKERQLFWHSERLAVAYGL 552
            +HP   +I  +L +++  ++ + GY   D    LHD++++ +   L  HSERLAV   L
Sbjct: 789 EAHPQAGDIRRVLRDVETRVREQLGYCADDVQFALHDVDEESRAESLRAHSERLAVGLWL 848

Query: 553 LKSVPGTV-------LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           L++            +RV KNLRVCGDCH   K +S + +R +VVRDA R+H F+ G CS
Sbjct: 849 LRNGVDGGGGGHRQPIRVYKNLRVCGDCHEFFKGLSAVVRRALVVRDANRFHRFEHGTCS 908

Query: 606 CNDFW 610
           C D+W
Sbjct: 909 CKDYW 913



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 189/436 (43%), Gaps = 72/436 (16%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LH  + KLG      L N LID Y KC  +  A  +   M  R+ VSW +++  + Q   
Sbjct: 239 LHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMRDRNVVSWTALMVGFLQHGD 298

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
               + +   M A  +  P+ +  ++ +KAC        G  +H   V + + +  VV S
Sbjct: 299 ATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVAS 358

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSV-SWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           SLV +Y+K G   +AR VFD   L   + +W AM+S YA +G  +DA+ +F +       
Sbjct: 359 SLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAGHGRDALLVFRE------- 411

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
                     + +++ D F                   +S++ AC        G Q+H  
Sbjct: 412 --MRRRRRRHEDQHQPDEF-----------------TFASLLKACGGLGAPREGAQVHAA 452

Query: 264 VIALGYE--SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           + A G+   S   ++ A+VDMY KC  +  A  +F R+ RK+ + WT+++VG AQ GQ  
Sbjct: 453 MAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVM 512

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI-TPS---LQH 377
           E L L+     +G + +      ++   +   LV +GR+     +  YG+ +P+   +  
Sbjct: 513 EALELFRRFWRSGARADAHVLSSIVGVLADFALVEQGRQ-----VHCYGVKSPAGTDVSA 567

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMP----------------------------------F 403
              ++D+  + G  DEAE + + +P                                   
Sbjct: 568 GNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGV 627

Query: 404 EPDEPTWAALLSACKH 419
           EPDE T+ ALLSAC H
Sbjct: 628 EPDEVTYLALLSACSH 643



 Score = 96.3 bits (238), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 8/184 (4%)

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
           +++ ++ A A  + L  G Q+HG +  LG+ S   + N ++DMYAKC ++  A ++FG M
Sbjct: 219 MIADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGM 278

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAG-VKPNEVTFVGLIYACSHVGLVGKG 358
           R ++VVSWT+++VG  QHG A   L L  EM +A    PNE T    + AC     +G G
Sbjct: 279 RDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTEDMGAG 338

Query: 359 RKLFKSMIEDYGITPSLQHY---TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLS 415
             +    +     T   +HY   + L+ L S+ G + +A  +           TW A++S
Sbjct: 339 VGIHGLCVR----TGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMIS 394

Query: 416 ACKH 419
              H
Sbjct: 395 GYAH 398



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 117/270 (43%), Gaps = 46/270 (17%)

Query: 107 VFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSI 166
           + A L++A     + R G Q+H       F  D ++ ++L+DMYAKCG  + A  VF  +
Sbjct: 219 MIADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGM 278

Query: 167 KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFI 226
           + +N VSWTA++  + + G     + +                                 
Sbjct: 279 RDRNVVSWTALMVGFLQHGDATGCLRLLG------------------------------- 307

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           EMR       +   LS+ + AC     +  G  IHGL +  GYE    +++++V +Y+K 
Sbjct: 308 EMRAASEAAPNEYTLSASLKACCVTEDMGAGVGIHGLCVRTGYEEHYVVASSLVLLYSKG 367

Query: 287 SDIIAAKDIF-----GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV------ 335
             I  A+ +F     GR     + +W ++I G A  G   + L ++ EM           
Sbjct: 368 GRIGDARRVFDCAGLGR----GLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQH 423

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +P+E TF  L+ AC  +G   +G ++  +M
Sbjct: 424 QPDEFTFASLLKACGGLGAPREGAQVHAAM 453


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/514 (38%), Positives = 299/514 (58%), Gaps = 9/514 (1%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA  + + T + +H  + +        + + L+D Y KC+  + A  + + MP+R+ 
Sbjct: 158 LSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPERNV 217

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW S++T Y Q     + + +F  M+A     PD    +S++ AC  L A R G+QVHA
Sbjct: 218 VSWNSLITCYEQNGPVGEALMLFVEMMAA-GFSPDEVTLSSVMSACAGLAADREGRQVHA 276

Query: 130 CFV-LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
             V      DD V+ ++LVDMYAKCG    AR +FDS+  ++ VS T++L+ YA+S   +
Sbjct: 277 HMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVE 336

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           DA  +F Q   +N+  W  L++   Q+  E +A   F++++R+ +         +++ AC
Sbjct: 337 DAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSI-WPTHYTYGNVLNAC 395

Query: 249 ANFAVLELGKQIH------GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRK 302
            N A L+LG+Q H      G     G ES +F+ N++VDMY K   I     +F RM  +
Sbjct: 396 GNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAAR 455

Query: 303 DVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF 362
           D VSW ++IVG AQ+G+A++ L L++ M+ +   P+ VT +G++ AC H GLV +GR+ F
Sbjct: 456 DNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYF 515

Query: 363 KSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
            SM ED+GITPS  HYTC++DLL R+GHL EAE LI  MP EPD   WA+LL AC+ H+N
Sbjct: 516 HSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLHKN 575

Query: 423 TEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIE 482
            E+G   A  L  L P++   Y+LLSN+YA    W  V +VR+ M    V K+PG S+IE
Sbjct: 576 VELGEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCSWIE 635

Query: 483 FGKGSHIFYAGETSHPLKDEIFELLTELDAEMKR 516
            G+  ++F A +  HP ++EI   L  +  EM R
Sbjct: 636 IGRKMNVFLARDKRHPCRNEIHNTLRIIQMEMGR 669



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/462 (24%), Positives = 207/462 (44%), Gaps = 102/462 (22%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
            +  HA+I+K  +     L NTL+  Y +   ++ A  + +E+P R+  S+ ++L+AY +
Sbjct: 36  ARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYAR 95

Query: 82  ANLPQKTISIFSTMLALDK---------------------------LQPDHFV-----FA 109
              P +  ++F  +   D+                           +  D FV     FA
Sbjct: 96  LGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFA 155

Query: 110 SLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           S + AC +   +R G+QVH     SP  DD  ++S+LVDMYAKC  P +AR VFD++  +
Sbjct: 156 SALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRVFDAMPER 215

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
           N VSW ++++ Y ++G            PV                    +A   F+EM 
Sbjct: 216 NVVSWNSLITCYEQNG------------PVG-------------------EALMLFVEMM 244

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHG-LVIALGYESCLFISNAIVDMYAKC-- 286
             G    D + LSS++ ACA  A    G+Q+H  +V        + ++NA+VDMYAKC  
Sbjct: 245 AAGFS-PDEVTLSSVMSACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGR 303

Query: 287 -----------------------------SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
                                        +++  A+ +F +M  K+V++W  +I   AQ+
Sbjct: 304 TWEARCIFDSMPSRSIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQN 363

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-----DYGIT 372
           G+ EE + L+ ++    + P   T+  ++ AC ++  +  G++    +++     D+G  
Sbjct: 364 GEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPE 423

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
             +     L+D+  ++G +D+   + + M    D  +W A++
Sbjct: 424 SDVFVGNSLVDMYLKTGSIDDGAKVFERMAAR-DNVSWNAMI 464



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 154/296 (52%), Gaps = 4/296 (1%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
            A L+++  +L   R     HA  + SP   +  + ++LV  YA+ G   +AR VFD I 
Sbjct: 23  LADLLRSAPNLSGAR---AAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIP 79

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ-SRNEIDAFYSFI 226
           L+N+ S+ A+LSAYAR GR  +A  +FE  P  +   + A+V+ L +  R        F+
Sbjct: 80  LRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFL 139

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
                   +++    +S + ACA       G+Q+HGLV    +   + I +A+VDMYAKC
Sbjct: 140 AAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKC 199

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
                A+ +F  M  ++VVSW S+I    Q+G   E L L+ EM++AG  P+EVT   ++
Sbjct: 200 ERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVM 259

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
            AC+ +    +GR++   M++   +   +     L+D+ ++ G   EA  +  +MP
Sbjct: 260 SACAGLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMP 315


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/592 (35%), Positives = 328/592 (55%), Gaps = 35/592 (5%)

Query: 20  LTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAY 79
           L  K +HA  +K  L     + NTLID Y KC  V YA  + ++M  +D +SW +++ AY
Sbjct: 230 LNGKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAY 289

Query: 80  NQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD 139
            Q N   + + +    +    +  D  +  S + AC  L      K+VH  + L     D
Sbjct: 290 AQNNCHTEALKLLRK-VQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHG-YTLKRGLSD 347

Query: 140 DVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPV 199
            ++++ ++D+YA CG  N A                                 +FE    
Sbjct: 348 LMMQNMIIDVYADCGNINYA-------------------------------TRMFESIKC 376

Query: 200 RNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ 259
           +++  WT+++S  V +    +A   F  M+   V+  D + L SI+ A A+ + L  GK+
Sbjct: 377 KDVVSWTSMISCYVHNGLANEALGVFYLMKETSVE-PDSITLVSILSAAASLSALNKGKE 435

Query: 260 IHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQ 319
           IHG +   G+       N++VDMYA C  +  A  +F   R K +V WT++I     HG+
Sbjct: 436 IHGFIFRKGFMLEGSTVNSLVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGR 495

Query: 320 AEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYT 379
            +  + L+  M    + P+ +TF+ L+YACSH GL+ +G++L ++M   Y + P  +HY 
Sbjct: 496 GKAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYA 555

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
           CL+DLL R+ HL+EA + +K+M  EP    W A L AC+ H N ++G   A  LL L P+
Sbjct: 556 CLVDLLGRANHLEEAYHFVKSMQIEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPD 615

Query: 440 DPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPL 499
            P SY+L+SNV+A++  W+ V +VR  M    +KK PG S+IE G   H F   + SHP 
Sbjct: 616 SPGSYVLISNVFAASGRWKDVEEVRMRMKGGGLKKNPGCSWIEVGNKVHTFLVRDKSHPE 675

Query: 500 KDEIFELLTELDAEMKRR-GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPG 558
             +I++ L ++  ++++  GYVP T  VLH++ ++EK + L+ HSERLA+AYGL+ +  G
Sbjct: 676 SYKIYQKLAQITEKLEKEGGYVPQTKLVLHNVGKEEKVQMLYGHSERLAIAYGLMSTSEG 735

Query: 559 TVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           T +R+ KNLRVC DCH   K++S+  +RE++VRDA+R+HHF+DG CSC DFW
Sbjct: 736 TPIRITKNLRVCVDCHTFCKLVSKFFERELIVRDASRFHHFEDGVCSCGDFW 787



 Score =  132 bits (332), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 104/432 (24%), Positives = 195/432 (45%), Gaps = 52/432 (12%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQR-DHVSWASILTAYNQAN 83
           +H  IIK G      + N+L+  Y KC+ +  A  L + M +R D VSW SI++AY+   
Sbjct: 32  IHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNG 91

Query: 84  LPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK 143
              + + +F  M     +  + +   + ++AC      +LG ++HA  + S    D  V 
Sbjct: 92  QCMEALGLFREMQKAG-VGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVA 150

Query: 144 SSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLF 203
           ++LV M+ + G  + A  +FD +  K++++W +M++ + ++G   +A++ F      NL 
Sbjct: 151 NALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANL- 209

Query: 204 LWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGL 263
                                            D + L SI+ A      L  GK+IH  
Sbjct: 210 -------------------------------KPDEVSLISILAASGRLGYLLNGKEIHAY 238

Query: 264 VIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEET 323
            +    +S L I N ++DMY+KC  +  A  +F +M  KD++SWT++I   AQ+    E 
Sbjct: 239 AMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEA 298

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT-----PSLQHY 378
           L L  ++ + G+  + +     + ACS       G +      E +G T       L   
Sbjct: 299 LKLLRKVQTKGMDVDTMMIGSTLLACS-------GLRCLSHAKEVHGYTLKRGLSDLMMQ 351

Query: 379 TCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH--RNTEMGTRVANHLLSL 436
             ++D+ +  G+++ A  + +++  + D  +W +++S   H+   N  +G     +L+  
Sbjct: 352 NMIIDVYADCGNINYATRMFESIKCK-DVVSWTSMISCYVHNGLANEALGVF---YLMKE 407

Query: 437 KPEDPSSYILLS 448
              +P S  L+S
Sbjct: 408 TSVEPDSITLVS 419



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 77/314 (24%), Positives = 150/314 (47%), Gaps = 35/314 (11%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D F F  ++KACG +     G ++H   +   +     V +SLV MYAKC     AR +F
Sbjct: 9   DSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGARKLF 68

Query: 164 DSIKLKNS-VSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
           D +  +N  VSW +++SAY+ +G+  +A+ +F                            
Sbjct: 69  DRMNERNDVVSWNSIISAYSLNGQCMEALGLFR--------------------------- 101

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
               EM++ GV   +   L + + AC + +  +LG +IH  ++       ++++NA+V M
Sbjct: 102 ----EMQKAGVG-ANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAM 156

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           + +   +  A  IF  +  KD ++W S+I G  Q+G   E L  +  +  A +KP+EV+ 
Sbjct: 157 HVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSL 216

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
           + ++ A   +G +  G+++    ++++ +  +L+    L+D+ S+   +  A  +   M 
Sbjct: 217 ISILAASGRLGYLLNGKEIHAYAMKNW-LDSNLRIGNTLIDMYSKCCCVAYAGLVFDKM- 274

Query: 403 FEPDEPTWAALLSA 416
              D  +W  +++A
Sbjct: 275 INKDLISWTTVIAA 288



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 4/190 (2%)

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           MR  GV   D      ++ AC     +  G +IHGL+I  GY+S +F++N++V MYAKC+
Sbjct: 1   MRVLGVPF-DSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCN 59

Query: 288 DIIAAKDIFGRM-RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
           DI+ A+ +F RM  R DVVSW SII   + +GQ  E L L+ EM  AGV  N  T V  +
Sbjct: 60  DILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAAL 119

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            AC        G ++  ++++   +   +     L+ +  R G +  A  +   +  E D
Sbjct: 120 QACEDSSFKKLGMEIHAAILKSNQVL-DVYVANALVAMHVRFGKMSYAARIFDELD-EKD 177

Query: 407 EPTWAALLSA 416
             TW ++++ 
Sbjct: 178 NITWNSMIAG 187


>gi|296087368|emb|CBI33742.3| unnamed protein product [Vitis vinifera]
          Length = 562

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/453 (40%), Positives = 277/453 (61%), Gaps = 1/453 (0%)

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
           +A+ +FD++  K+ VS TAML+ YA+ G    A  +F+    R+   W  ++ G  Q+  
Sbjct: 111 SAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGM 170

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             +A   F  M +      +  VLS ++ AC     LE G+ +H  +   G +  + +  
Sbjct: 171 PNEALVLFRRMLKAKAKPNEVTVLS-VLSACGQLGALESGRWVHSYIENNGIQFNVHVGT 229

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           A+VDMY+KC  +  A+ +F ++  KDVV+W S+IVG A HG ++E L L+  M   G+ P
Sbjct: 230 ALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMHGFSQEALQLFKSMCRMGLHP 289

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
             +TF+G++ AC H G V +G  +F  M ++YGI P ++HY C+++LL R+GH+++A  L
Sbjct: 290 TNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYEL 349

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           +K M  EPD   W  LL AC+ H    +G ++   L+     +  +YILLSN+YA+   W
Sbjct: 350 VKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVELLVDQNLANSGTYILLSNIYAAVGNW 409

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
             V+++R +M    VKKEPG S IE     H F AG  +HP + EI+ +L E++  +K  
Sbjct: 410 DGVARLRTMMKDSGVKKEPGCSSIEVNNKVHEFLAGGLNHPKRKEIYMMLEEINGWLKSH 469

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GY P T  VLHD+ + EKER L  HSE+LA+A+GL+ + PGT +++VKNLRVC DCH V 
Sbjct: 470 GYTPQTDIVLHDIGETEKERSLEVHSEKLAIAFGLINTQPGTTIKIVKNLRVCADCHEVT 529

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K+IS+IT R+IVVRD  R+HHF +G CSC D+W
Sbjct: 530 KLISKITGRKIVVRDRNRFHHFVNGSCSCGDYW 562



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 84/152 (55%), Gaps = 1/152 (0%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           ++  Y K   +  A  L + M +RD V W  ++  Y Q  +P + + +F  ML   K +P
Sbjct: 130 MLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKA-KAKP 188

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           +     S++ ACG LGA   G+ VH+    +    +  V ++LVDMY+KCG   +AR VF
Sbjct: 189 NEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVF 248

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
           D I  K+ V+W +M+  YA  G  ++A+++F+
Sbjct: 249 DKIDDKDVVAWNSMIVGYAMHGFSQEALQLFK 280



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 129/333 (38%), Gaps = 80/333 (24%)

Query: 180 AYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPL 239
           +YA  GR   ++ +F +    ++F WTA++ G     + + A   F  M           
Sbjct: 71  SYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRGDVVSAQQLFDTMP---------- 120

Query: 240 VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
                                         E  L    A++  YAK  ++ AA+ +F  M
Sbjct: 121 ------------------------------EKSLVSLTAMLTCYAKHGELDAARVLFDGM 150

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
             +D V W  +I G  Q+G   E L L+  M+ A  KPNEVT + ++ AC  +G +  GR
Sbjct: 151 EERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGR 210

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD--------------------------- 392
            +  S IE+ GI  ++   T L+D+ S+ G L+                           
Sbjct: 211 WV-HSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIVGYAMH 269

Query: 393 ----EAENLIKA---MPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP--SS 443
               EA  L K+   M   P   T+  +LSAC H      G  + N +      +P    
Sbjct: 270 GFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEH 329

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEP 476
           Y  + N+   A    HV +  +L+  M ++ +P
Sbjct: 330 YGCMVNLLGRAG---HVEQAYELVKNMNIEPDP 359



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 40/198 (20%), Positives = 85/198 (42%), Gaps = 9/198 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C +     + + +H+ I   G+     +   L+D Y KC  ++ A  + +++  +D 
Sbjct: 197 LSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDV 256

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG----K 125
           V+W S++  Y      Q+ + +F +M  +  L P +  F  ++ ACG  G    G     
Sbjct: 257 VAWNSMIVGYAMHGFSQEALQLFKSMCRMG-LHPTNITFIGILSACGHSGWVTEGWDIFN 315

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLSAYARS 184
           ++   + + P  +       +V++  + G    A  +  ++ ++ + V W  +L A    
Sbjct: 316 KMKDEYGIEPKIEH---YGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLH 372

Query: 185 GRKKDAMEIFEQAPVRNL 202
           G+     +I E    +NL
Sbjct: 373 GKIALGEKIVELLVDQNL 390



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 78/178 (43%), Gaps = 12/178 (6%)

Query: 259 QIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
           QIH ++   G +    ++  +   YA    +  +  +FGR +   V  WT+II G A  G
Sbjct: 48  QIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAIIHGHALRG 107

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY 378
                  L+D M    +    V+   ++   +  G +   R LF  M E  G+      +
Sbjct: 108 DVVSAQQLFDTMPEKSL----VSLTAMLTCYAKHGELDAARVLFDGMEERDGVC-----W 158

Query: 379 TCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
             ++D  +++G  +EA  L + M     +P+E T  ++LSAC      E G  V +++
Sbjct: 159 NVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYI 216


>gi|115455891|ref|NP_001051546.1| Os03g0795200 [Oryza sativa Japonica Group]
 gi|50400032|gb|AAT76420.1| putative PPR repeat containing protein [Oryza sativa Japonica
           Group]
 gi|108711537|gb|ABF99332.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113550017|dbj|BAF13460.1| Os03g0795200 [Oryza sativa Japonica Group]
          Length = 611

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/563 (36%), Positives = 315/563 (55%), Gaps = 40/563 (7%)

Query: 54  VQYAHHLLEEMPQRDHVSWASIL-----TAYNQANLPQKTISIFSTMLALDKLQPDHFVF 108
           + YA  + + +P    V W + L              ++   +F  M+  + + PD + F
Sbjct: 83  LAYARQVFDRIPHPGDVVWYNTLLRGYARGGGGGGGAEEAARVFVRMME-EGVAPDTYTF 141

Query: 109 ASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL 168
            SL+KAC S  A   G+Q H   V +   + + V  +L++MYA+CG    AR +FD +  
Sbjct: 142 VSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDG 201

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228
           +  VS+ AM++A  RS    +A+ +F                                EM
Sbjct: 202 ECVVSYNAMITASVRSSLPGEALVLFR-------------------------------EM 230

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
           + +G+     + L S++ ACA    LELG+ IH  +  +  +S + ++ A++DMYAKC  
Sbjct: 231 QAKGLKPTS-VTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGS 289

Query: 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
           +  A  +F  M  +D  +W+ ++V  A HG   E +++++EM   G+KP++VTF+G++YA
Sbjct: 290 LEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYA 349

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           CSH G+V +G + F SM E YGI   ++HY C+ DLL+RSG L+ A   I  +P +P   
Sbjct: 350 CSHSGMVSEGLQYFDSMRE-YGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAI 408

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
            W  LLSAC  H + +MG RV   +L L       Y++ SN+ A+   W+ ++ VRKLMS
Sbjct: 409 LWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMS 468

Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH 528
              V K PG S IE     H F+AG+ SHP   E   ++ E+  ++K  GYVP+TS V H
Sbjct: 469 EKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFH 528

Query: 529 -DMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
            +M ++EK   L +HSE+LA+++GLL + PGT LR+VKNLRVC DCH + K++S +  R 
Sbjct: 529 VEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRR 588

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           I++RD  R+HHF+DG CSC D+W
Sbjct: 589 IILRDLNRFHHFEDGVCSCGDYW 611



 Score =  101 bits (252), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 159/367 (43%), Gaps = 77/367 (20%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L+ CA  +     +  H   +K G  ++  +  TLI+ Y +C  V+ A  + + M 
Sbjct: 141 FVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMD 200

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
               VS+ +++TA  +++LP + + +F  M A   L+P      S++ AC  LGA  LG+
Sbjct: 201 GECVVSYNAMITASVRSSLPGEALVLFREMQA-KGLKPTSVTLISVLSACALLGALELGR 259

Query: 126 QVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
            +H  ++     D  V V ++L+DMYAKCG   +A  VF  ++ ++  +W+ M+ AYA  
Sbjct: 260 WIHD-YIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANH 318

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G  ++A+ +FE                               EM+++G+   D +    +
Sbjct: 319 GYGREAISMFE-------------------------------EMKKQGMK-PDDVTFLGV 346

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + AC++  ++  G Q                                    F  MR   +
Sbjct: 347 LYACSHSGMVSEGLQ-----------------------------------YFDSMREYGI 371

Query: 305 VS----WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
           VS    +  +    A+ GQ E      DE+    +KP  + +  L+ AC+  G V  G++
Sbjct: 372 VSGIKHYGCVTDLLARSGQLERAYKFIDELP---IKPTAILWRTLLSACAGHGDVDMGKR 428

Query: 361 LFKSMIE 367
           +F+ ++E
Sbjct: 429 VFERILE 435


>gi|302780547|ref|XP_002972048.1| hypothetical protein SELMODRAFT_96927 [Selaginella moellendorffii]
 gi|300160347|gb|EFJ26965.1| hypothetical protein SELMODRAFT_96927 [Selaginella moellendorffii]
          Length = 606

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/604 (33%), Positives = 322/604 (53%), Gaps = 35/604 (5%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           LHR   CA  +       LHA ++  G  +   L N L+ AYG+C  V+ AH +    P 
Sbjct: 38  LHR---CAAERALPQAHQLHALMLATGALRSRYLSNKLVQAYGQCGDVESAHAVFARQPD 94

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
            +  SW  +++A  +   P+  +  +  M  L    PD  V +++  A        LG+ 
Sbjct: 95  PNVFSWMMLISACLRNARPRAALGHYRAM-QLRGCHPDAHVVSAIFCAVADTANLELGRS 153

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           + A    +    D VV +SL++MY +CG  ++    F ++  ++ VSWT ML+   + GR
Sbjct: 154 ITAPLASTAMLHDPVVANSLLNMYRRCGGMDDFERAFWAMPSRDEVSWTTMLAGRIQCGR 213

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
           +  A+E+                                  M ++G  I   L  +++V 
Sbjct: 214 EASALELLRV-------------------------------MDQDGFRITSALTFATLVD 242

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           AC N + +  G+ +H  +I  G    + +  A+++MYAKC  +  A+++F +    + ++
Sbjct: 243 ACGNLSAIAQGRHLHDRIITSGVCIDVVLHTALLNMYAKCGRVDEARELFDQTLEPNNIT 302

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           ++S++   A++G   + L L+  M   G KP+ VTF  ++YACSH G V +    F ++ 
Sbjct: 303 FSSMVAAYARNGHFGDALKLFWSMEQDGYKPDSVTFTHVLYACSHGGFVDQAWHYFTTLE 362

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
            D GI    +H+ C +DLL+R+G L +AE  +  MP  PD  +W +LL AC+ HRN E+G
Sbjct: 363 PDRGIPLVAEHFGCAVDLLARAGWLADAEKFLNRMPIPPDSVSWMSLLQACRIHRNVEIG 422

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
            R A H+  L P     Y LLSN+Y+ A  W   +KV+KLM    +KK  G S+IE    
Sbjct: 423 ARAAEHVFRLAPHRAGPYSLLSNIYSDAGKWDMAAKVQKLMRDRGIKKPGGRSWIEINGK 482

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
           +  F  G++ HP   +I + +  +   MK  GYVPDT  VLHD E++EKE  L++HSE+L
Sbjct: 483 TSEFIVGDSWHPDLVQICQEIQRVSKVMKEHGYVPDTKQVLHDAEEEEKEDILYFHSEKL 542

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           A+  GL+K+ P T + +VKN+RVC DCH   K+IS++T+R+IV+RD   +HH +DG CSC
Sbjct: 543 AIGLGLIKTPPKTTISIVKNIRVCPDCHTAAKVISKVTERKIVIRDINLFHHMEDGNCSC 602

Query: 607 NDFW 610
            D+W
Sbjct: 603 RDYW 606



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 140/317 (44%), Gaps = 37/317 (11%)

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN 170
           L+  C +  A     Q+HA  + +       + + LV  Y +CG   +A AVF      N
Sbjct: 37  LLHRCAAERALPQAHQLHALMLATGALRSRYLSNKLVQAYGQCGDVESAHAVFARQPDPN 96

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
             SW  ++SA  R+ R + A+  +    +R                              
Sbjct: 97  VFSWMMLISACLRNARPRAALGHYRAMQLRGCH--------------------------- 129

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290
                 D  V+S+I  A A+ A LELG+ I   + +        ++N++++MY +C  + 
Sbjct: 130 -----PDAHVVSAIFCAVADTANLELGRSITAPLASTAMLHDPVVANSLLNMYRRCGGMD 184

Query: 291 AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVK-PNEVTFVGLIYAC 349
             +  F  M  +D VSWT+++ G  Q G+    L L   M   G +  + +TF  L+ AC
Sbjct: 185 DFERAFWAMPSRDEVSWTTMLAGRIQCGREASALELLRVMDQDGFRITSALTFATLVDAC 244

Query: 350 SHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
            ++  + +GR L   +I   G+   +  +T LL++ ++ G +DEA  L      EP+  T
Sbjct: 245 GNLSAIAQGRHLHDRIITS-GVCIDVVLHTALLNMYAKCGRVDEARELFDQT-LEPNNIT 302

Query: 410 WAALLSACKHHRNTEMG 426
           ++++++A  + RN   G
Sbjct: 303 FSSMVAA--YARNGHFG 317


>gi|356557795|ref|XP_003547196.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g21065-like [Glycine max]
          Length = 661

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/558 (34%), Positives = 324/558 (58%), Gaps = 41/558 (7%)

Query: 53  LVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLV 112
           ++ YA+++   +   +  +W ++   Y +++ P   +  +  M+ + +++PD   +  L+
Sbjct: 79  VLSYAYNVFTMIHNPNVFTWNTMTRGYAESDNPSPALRFYRQMI-VSRIEPDTHTYPFLL 137

Query: 113 KACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSV 172
           KA       R G+ +H+  + + F     V++SL+ +YA CG   +A  VF+ ++ ++ V
Sbjct: 138 KAISKSLNVREGEAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLV 197

Query: 173 SWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREG 232
           +  ++++ +A +GR  +A+ +F                                EM  EG
Sbjct: 198 AXISVINGFALNGRPSEALTLFR-------------------------------EMSAEG 226

Query: 233 VDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAA 292
           V+  D   + S++ A A    LELG+++H  ++ +G      ++N+++D+YAKC  I   
Sbjct: 227 VE-PDGFTVVSLLSASAELGALELGRRVHVYLLKVGLRENSHVTNSLLDLYAKCDAIWEX 285

Query: 293 KDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHV 352
           +        ++ VSWTS+IVG A +G  EE L L+ EM   G+ P+E+TFVG++YACSH 
Sbjct: 286 E--------RNAVSWTSLIVGLAVNGFGEEALELFREMEGQGLVPSEITFVGVLYACSHC 337

Query: 353 GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAA 412
           G++ +G   F+ M E++GI P ++HY C++DLLSR+G + +A   I+ MP +P+  TW  
Sbjct: 338 GMLDEGFDYFRRMKEEFGIMPRIEHYGCMVDLLSRAGLVKQAYEYIQNMPVQPNAVTWRT 397

Query: 413 LLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEV 472
           LL AC  H +  +G    +HLL L+P+    Y+LLSN+Y S   W  V  +R+ M    V
Sbjct: 398 LLGACTIHGHLGLGETARSHLLKLEPKHSGDYVLLSNLYTSECRWADVQLIRRSMLKDGV 457

Query: 473 KKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQ 532
           KK  GYS +E G   + F  G  SHP   +++ LL ++   +K  GYVP T++VL D+E+
Sbjct: 458 KKTSGYSLVELGNRVYEFTMGNRSHPQSQDVYALLEKITELLKLEGYVPHTANVLADIEE 517

Query: 533 KEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRD 592
           +EKE+ L +HSE+ A+A+  L + PGT +RV+KNLRVC DCH+ +K+++++  REIV+RD
Sbjct: 518 EEKEQALSYHSEKXAIAFMRLNTAPGTTIRVMKNLRVCADCHMAIKLMAKVYDREIVIRD 577

Query: 593 ATRYHHFKDGKCSCNDFW 610
             R+HHF+ G CSC D+W
Sbjct: 578 RGRFHHFRGGSCSCKDYW 595



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 95/174 (54%), Gaps = 9/174 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H+  I+ G      + N+L+  Y  C   + AH++ E M  RD V+  S++  +   
Sbjct: 150 EAIHSVTIRNGFESLVFVQNSLLHIYAACGDTESAHNVFELMRDRDLVAXISVINGFALN 209

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P + +++F  M A + ++PD F   SL+ A   LGA  LG++VH   +     ++  V
Sbjct: 210 GRPSEALTLFREMSA-EGVEPDGFTVVSLLSASAELGALELGRRVHVYLLKVGLRENSHV 268

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
            +SL+D+YAKC       A+++    +N+VSWT+++   A +G  ++A+E+F +
Sbjct: 269 TNSLLDLYAKCD------AIWEX--ERNAVSWTSLIVGLAVNGFGEEALELFRE 314


>gi|125546028|gb|EAY92167.1| hypothetical protein OsI_13880 [Oryza sativa Indica Group]
          Length = 671

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 205/563 (36%), Positives = 315/563 (55%), Gaps = 40/563 (7%)

Query: 54  VQYAHHLLEEMPQRDHVSWASIL-----TAYNQANLPQKTISIFSTMLALDKLQPDHFVF 108
           + YA  + + +P    V W + L              ++   +F  M+  + + PD + F
Sbjct: 83  LAYARQVFDRIPHPGDVIWYNTLLRGYARGGGGGGGAEEAARVFVRMME-EGVAPDTYTF 141

Query: 109 ASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL 168
            SL+KAC S  A   G+Q H   V +   + + V  +L++MYA+CG    AR +FD +  
Sbjct: 142 VSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMDG 201

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228
           +  VS+ AM++A  RS    +A+ +F                                EM
Sbjct: 202 ECVVSYNAMITASVRSSLPGEALVLFR-------------------------------EM 230

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
           + +G+     + L S++ ACA    LELG+ IH  +  +  +S + ++ A++DMYAKC  
Sbjct: 231 QAKGLKPTS-VTLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGS 289

Query: 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
           +  A  +F  M  +D  +W+ ++V  A HG   E +++++EM   G+KP++VTF+G++YA
Sbjct: 290 LEDAIGVFQDMESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYA 349

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           CSH G+V +G + F SM E YGI   ++HY C+ DLL+RSG L+ A   I  +P +P   
Sbjct: 350 CSHSGMVSEGLQYFDSMRE-YGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAI 408

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
            W  LLSAC  H + +MG RV   +L L       Y++ SN+ A+   W+ ++ VRKLMS
Sbjct: 409 LWRTLLSACAGHGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMS 468

Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH 528
              V K PG S IE     H F+AG+ SHP   E   ++ E+  ++K  GYVP+TS V H
Sbjct: 469 EKGVVKVPGCSSIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFH 528

Query: 529 -DMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKRE 587
            +M ++EK   L +HSE+LA+++GLL + PGT LR+VKNLRVC DCH + K++S +  R 
Sbjct: 529 VEMGEEEKATSLRYHSEKLAISFGLLNTAPGTTLRIVKNLRVCPDCHSMAKLVSMVFNRR 588

Query: 588 IVVRDATRYHHFKDGKCSCNDFW 610
           I++RD  R+HHF+DG CSC D+W
Sbjct: 589 IILRDLNRFHHFEDGVCSCGDYW 611



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 159/367 (43%), Gaps = 77/367 (20%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L+ CA  +     +  H   +K G  ++  +  TLI+ Y +C  V+ A  + + M 
Sbjct: 141 FVSLLKACASARAGEEGRQAHGVAVKAGAAEHEYVAPTLINMYAECGDVRAARVMFDRMD 200

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
               VS+ +++TA  +++LP + + +F  M A   L+P      S++ AC  LGA  LG+
Sbjct: 201 GECVVSYNAMITASVRSSLPGEALVLFREMQA-KGLKPTSVTLISVLSACALLGALELGR 259

Query: 126 QVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
            +H  ++     D  V V ++L+DMYAKCG   +A  VF  ++ ++  +W+ M+ AYA  
Sbjct: 260 WIHD-YIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDMESRDKQAWSVMMVAYANH 318

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
           G  ++A+ +FE                               EM+++G+   D +    +
Sbjct: 319 GYGREAISMFE-------------------------------EMKKQGMK-PDDVTFLGV 346

Query: 245 VGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDV 304
           + AC++  ++  G Q                                    F  MR   +
Sbjct: 347 LYACSHSGMVSEGLQ-----------------------------------YFDSMREYGI 371

Query: 305 VS----WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
           VS    +  +    A+ GQ E      DE+    +KP  + +  L+ AC+  G V  G++
Sbjct: 372 VSGIKHYGCVTDLLARSGQLERAYKFIDELP---IKPTAILWRTLLSACAGHGDVDMGKR 428

Query: 361 LFKSMIE 367
           +F+ ++E
Sbjct: 429 VFERILE 435


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/598 (31%), Positives = 322/598 (53%), Gaps = 34/598 (5%)

Query: 13  CARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSW 72
           C +   +     +H   ++ GL     L N L+D Y  C   +  + +   M Q++ VSW
Sbjct: 95  CVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSW 154

Query: 73  ASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
            +++T+Y +A    K   +F  M  L+ ++PD F   S + A     + + GK VH   +
Sbjct: 155 TAMITSYTRAGHFDKVAGLFQEM-GLEGIRPDVFAITSALDAFAGNESLKHGKSVHGYAI 213

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
            +   +   V ++L++MY KCG    AR +FD +  K+++SW  ++  Y+RS    +A  
Sbjct: 214 RNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFT 273

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F +               L+Q R                    + + ++ I+ A A+ +
Sbjct: 274 LFNEM--------------LLQLR-------------------PNAVTMACILPAAASLS 300

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
            LE G+++H   +  GY    F++NA+VDMY KC  ++ A+ +F  +  K+++SWT +I 
Sbjct: 301 SLERGREMHAYAVRRGYLEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIA 360

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
           G   HG+  + +AL+++M  +G++P+  +F  ++YACSH GL  +G + F +M  ++ I 
Sbjct: 361 GYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIE 420

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
           P L+HY C++DLL  +G+L EA   I+ MP EPD   W +LL  C+ HRN ++  +VA  
Sbjct: 421 PKLKHYACMVDLLCHTGNLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEM 480

Query: 433 LLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYA 492
           +  L+PE+   Y+LL+N+YA A  W+ V K++  +    +++  G S+IE    +HIF+A
Sbjct: 481 VFELEPENTGYYVLLANIYAEAERWEAVRKLKNKVGGRGLRENTGCSWIEVRGKAHIFFA 540

Query: 493 GETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGL 552
              +HP    I E L ++   M+  G+ P     L   +    +  L  HS +LAVA+G+
Sbjct: 541 ENRNHPQGMRIAEFLDDVARRMQEEGHDPKKKYALMGADDAVHDEALCGHSSKLAVAFGV 600

Query: 553 LKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           L    G  +RV KN RVC  CH   K IS++  REI++RD+ R+HHF++G+CSC  +W
Sbjct: 601 LNLSQGRPIRVTKNSRVCSHCHEAAKFISKMCGREIILRDSNRFHHFEEGRCSCRGYW 658



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 130/265 (49%), Gaps = 4/265 (1%)

Query: 175 TAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD 234
            A++S YA+S R +DA+ +F++ P R++  W +++ G   +     A   F+ M  EG +
Sbjct: 23  NALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCASNGLYDKAVELFVRMWLEGQE 82

Query: 235 IVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD 294
           + D   L S++ AC       +G  +HG  +  G  S   + NA++DMY+ CSD  +   
Sbjct: 83  L-DSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNK 141

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL 354
           IF  M +K+VVSWT++I    + G  ++   L+ EM   G++P+       + A +    
Sbjct: 142 IFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFAGNES 201

Query: 355 VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           +  G+ +    I + GI   L     L+++  + G+++EA  +   +  + D  +W  L+
Sbjct: 202 LKHGKSVHGYAIRN-GIEEVLPVANALMEMYVKCGYMEEARFIFDHVT-KKDTISWNTLI 259

Query: 415 SA-CKHHRNTEMGTRVANHLLSLKP 438
               + +   E  T     LL L+P
Sbjct: 260 GGYSRSNLANEAFTLFNEMLLQLRP 284



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 84/190 (44%), Gaps = 30/190 (15%)

Query: 257 GKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ 316
           G  +HG ++  G+ +   + NA++  YAK + I  A  +F  M ++D++SW SII G A 
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 317 HGQAEETLALYDEMVSAGVKPNEVTFVGLIYAC-----SHVGLVGKGRKLFKSMIEDYGI 371
           +G  ++ + L+  M   G + +  T + ++ AC     S +G V  G  +   +I +  +
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSL 122

Query: 372 TPSLQ-------------------------HYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
             +L                           +T ++   +R+GH D+   L + M  E  
Sbjct: 123 GNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGI 182

Query: 407 EPTWAALLSA 416
            P   A+ SA
Sbjct: 183 RPDVFAITSA 192


>gi|15239085|ref|NP_201360.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180382|sp|Q9LSL8.1|PP446_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65570
 gi|8978285|dbj|BAA98176.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010689|gb|AED98072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 210/587 (35%), Positives = 332/587 (56%), Gaps = 38/587 (6%)

Query: 26  HAQIIKLGLHQYGPLPNT-LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           H   + LGL        + L+D Y K    + A  +L+ + ++D V   +++  Y+Q   
Sbjct: 188 HGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGE 247

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
             + +  F +ML ++K+QP+ + +AS++ +CG+L     GK +H   V S F      ++
Sbjct: 248 DTEAVKAFQSML-VEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQT 306

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SL+ MY +C L +                               D++ +F+     N   
Sbjct: 307 SLLTMYLRCSLVD-------------------------------DSLRVFKCIEYPNQVS 335

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           WT+L+SGLVQ+  E  A   F +M R+ +   +   LSS +  C+N A+ E G+QIHG+V
Sbjct: 336 WTSLISGLVQNGREEMALIEFRKMMRDSIK-PNSFTLSSALRGCSNLAMFEEGRQIHGIV 394

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
              G++   +  + ++D+Y KC     A+ +F  +   DV+S  ++I   AQ+G   E L
Sbjct: 395 TKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREAL 454

Query: 325 ALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDL 384
            L++ M++ G++PN+VT + ++ AC++  LV +G +LF S  +D  I  +  HY C++DL
Sbjct: 455 DLFERMINLGLQPNDVTVLSVLLACNNSRLVEEGCELFDSFRKD-KIMLTNDHYACMVDL 513

Query: 385 LSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSY 444
           L R+G L+EAE L   +   PD   W  LLSACK HR  EM  R+   +L ++P D  + 
Sbjct: 514 LGRAGRLEEAEMLTTEV-INPDLVLWRTLLSACKVHRKVEMAERITRKILEIEPGDEGTL 572

Query: 445 ILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGET-SHPLKDEI 503
           IL+SN+YAS   W  V +++  M  M++KK P  S++E  K +H F AG+  SHP  ++I
Sbjct: 573 ILMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHTFMAGDLFSHPNSEQI 632

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRV 563
            E L EL  + K  GYV D S V  DME+  KER L  HSE+LA+A+ + ++V G++ R+
Sbjct: 633 LENLEELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAVWRNVGGSI-RI 691

Query: 564 VKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +KNLRVC DCH  +K++SR+ KREI+ RD+ R+HHF+DG CSC D+W
Sbjct: 692 LKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSCGDYW 738



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 181/391 (46%), Gaps = 36/391 (9%)

Query: 5   HYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEM 64
           ++   LR C   +    +KT+ A ++K G        + L+DA  KC  + YA  + + M
Sbjct: 67  NFSQLLRQCIDERSISGIKTIQAHMLKSGFPAEIS-GSKLVDASLKCGDIDYARQVFDGM 125

Query: 65  PQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG 124
            +R  V+W S++    +    ++ + ++  M+  + + PD +  +S+ KA   L   +  
Sbjct: 126 SERHIVTWNSLIAYLIKHRRSKEAVEMYRLMIT-NNVLPDEYTLSSVFKAFSDLSLEKEA 184

Query: 125 KQVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           ++ H   V+      +V V S+LVDMY K                               
Sbjct: 185 QRSHGLAVILGLEVSNVFVGSALVDMYVKF------------------------------ 214

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSS 243
            G+ ++A  + ++   +++ L TAL+ G  Q   + +A  +F  M  E V   +    +S
Sbjct: 215 -GKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQ-PNEYTYAS 272

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKD 303
           ++ +C N   +  GK IHGL++  G+ES L    +++ MY +CS +  +  +F  +   +
Sbjct: 273 VLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPN 332

Query: 304 VVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFK 363
            VSWTS+I G  Q+G+ E  L  + +M+   +KPN  T    +  CS++ +  +GR++  
Sbjct: 333 QVSWTSLISGLVQNGREEMALIEFRKMMRDSIKPNSFTLSSALRGCSNLAMFEEGRQI-H 391

Query: 364 SMIEDYGITPSLQHYTCLLDLLSRSGHLDEA 394
            ++  YG        + L+DL  + G  D A
Sbjct: 392 GIVTKYGFDRDKYAGSGLIDLYGKCGCSDMA 422



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 106/435 (24%), Positives = 204/435 (46%), Gaps = 53/435 (12%)

Query: 85  PQKTISIFSTMLAL--DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
           P+ +I+    +L +  D L   H  F+ L++ C    +    K + A  + S F   ++ 
Sbjct: 44  PESSINNQFRLLCITCDTLTTTHN-FSQLLRQCIDERSISGIKTIQAHMLKSGF-PAEIS 101

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            S LVD   KCG  + AR VFD +  ++ V+W ++++   +  R K+A+E++      N+
Sbjct: 102 GSKLVDASLKCGDIDYARQVFDGMSERHIVTWNSLIAYLIKHRRSKEAVEMYRLMITNNV 161

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                           + D   LSS+  A ++ ++ +  ++ HG
Sbjct: 162 --------------------------------LPDEYTLSSVFKAFSDLSLEKEAQRSHG 189

Query: 263 LVIALGYE-SCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           L + LG E S +F+ +A+VDMY K      AK +  R+  KDVV  T++IVG +Q G+  
Sbjct: 190 LAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDT 249

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E +  +  M+   V+PNE T+  ++ +C ++  +G G KL   ++   G   +L   T L
Sbjct: 250 EAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNG-KLIHGLMVKSGFESALASQTSL 308

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL--SLKPE 439
           L +  R   +D++  + K + + P++ +W +L+S    +   EM       ++  S+K  
Sbjct: 309 LTMYLRCSLVDDSLRVFKCIEY-PNQVSWTSLISGLVQNGREEMALIEFRKMMRDSIK-- 365

Query: 440 DPSSYILLSNVYASA--AMWQHVSKVRKLMSVMEVKKEPGYSYIEF-GKGSHIFYAGETS 496
            P+S+ L S +   +  AM++   ++  +++      + G+   ++ G G    Y     
Sbjct: 366 -PNSFTLSSALRGCSNLAMFEEGRQIHGIVT------KYGFDRDKYAGSGLIDLYGKCGC 418

Query: 497 HPLKDEIFELLTELD 511
             +   +F+ L+E+D
Sbjct: 419 SDMARLVFDTLSEVD 433



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 90/174 (51%), Gaps = 1/174 (0%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +H  ++K G         +L+  Y +C LV  +  + + +   + VSW S+++   Q 
Sbjct: 287 KLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLRVFKCIEYPNQVSWTSLISGLVQN 346

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              +  +  F  M+  D ++P+ F  +S ++ C +L     G+Q+H       F  D   
Sbjct: 347 GREEMALIEFRKMMR-DSIKPNSFTLSSALRGCSNLAMFEEGRQIHGIVTKYGFDRDKYA 405

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
            S L+D+Y KCG  + AR VFD++   + +S   M+ +YA++G  ++A+++FE+
Sbjct: 406 GSGLIDLYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALDLFER 459



 Score = 57.0 bits (136), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 11/176 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           LR C+   +    + +H  + K G  +     + LID YGKC     A  + + + + D 
Sbjct: 375 LRGCSNLAMFEEGRQIHGIVTKYGFDRDKYAGSGLIDLYGKCGCSDMARLVFDTLSEVDV 434

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +S  +++ +Y Q    ++ + +F  M+ L  LQP+     S++ AC +   +RL ++   
Sbjct: 435 ISLNTMIYSYAQNGFGREALDLFERMINLG-LQPNDVTVLSVLLACNN---SRLVEE--G 488

Query: 130 CFVLSPFCDDDVVKSS-----LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
           C +   F  D ++ ++     +VD+  + G    A  +   +   + V W  +LSA
Sbjct: 489 CELFDSFRKDKIMLTNDHYACMVDLLGRAGRLEEAEMLTTEVINPDLVLWRTLLSA 544


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/505 (39%), Positives = 294/505 (58%), Gaps = 17/505 (3%)

Query: 19  ALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
            L  ++ HA  + +G          L+D Y KC+    A  + + MP+R+ VSW S++T 
Sbjct: 175 GLVARSPHADDVHIG--------TALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITC 226

Query: 79  YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCD 138
           Y Q     + + +F  M+A     PD    +S++ AC  L A R G+QVHA  V      
Sbjct: 227 YEQNGPVGEALVLFVEMMAT-GFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLR 285

Query: 139 DD-VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
           DD V+ ++LVDMYAKCG    AR +FDS+  ++ VS T++L+ YA+S   +DA  +F Q 
Sbjct: 286 DDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQM 345

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
             +N+  W  L++   Q+  E +A   F++++R+ +         +++ AC N AVL+LG
Sbjct: 346 VEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSI-WPTHYTYGNVLNACGNIAVLQLG 404

Query: 258 KQIH------GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
           +Q H      G     G ES +F+ N++VDMY K   I     +F RM  +D VSW ++I
Sbjct: 405 QQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMI 464

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
           VG AQ+G+A++ L L++ M+ +   P+ VT +G++ AC H GLV +GR+ F  M ED+GI
Sbjct: 465 VGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGI 524

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
           TPS  HYTC++DLL R+GHL EAE LIK MP EPD   WA+LL AC+ H+N E+G R A 
Sbjct: 525 TPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAG 584

Query: 432 HLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFY 491
            L  L PE+   Y+LLSN+YA    W  V +VR+ M    V K+PG S+IE G   ++F 
Sbjct: 585 RLFELDPENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGSKMNVFL 644

Query: 492 AGETSHPLKDEIFELLTELDAEMKR 516
           A +  HP ++EI   L  +  EM R
Sbjct: 645 ARDNRHPCRNEIHSTLRIIQMEMCR 669



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 153/296 (51%), Gaps = 4/296 (1%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
            A L+++  SL   R     H C + SP   +  + ++LV  YA+ G    AR VFD I 
Sbjct: 23  LADLLRSAPSLPGAR---AAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIP 79

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ-SRNEIDAFYSFI 226
           L+N+ S+ A+LSAYAR GR  +A  +FE  P  +   + A+V+ L +  R        F+
Sbjct: 80  LRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFL 139

Query: 227 EMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
                   +++    +S + ACA    L  G+Q+HGLV    +   + I  A+VDMYAKC
Sbjct: 140 AAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKC 199

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
              + A+ +F  M  ++VVSW S+I    Q+G   E L L+ EM++ G  P+EVT   ++
Sbjct: 200 ERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVM 259

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
            AC+ +    +GR++   M++   +   +     L+D+ ++ G   EA  +  +MP
Sbjct: 260 SACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMP 315



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 109/461 (23%), Positives = 203/461 (44%), Gaps = 102/461 (22%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +  H  ++K  +     L NTL+  Y +   ++ A  + + +P R+  S+ ++L+AY + 
Sbjct: 37  RAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARL 96

Query: 83  NLPQKTISIFSTMLALDK---------------------------LQPDHFV-----FAS 110
             P +  ++F  +   D+                           +  D FV     FAS
Sbjct: 97  GRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFAS 156

Query: 111 LVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN 170
            + AC +    R G+QVH     SP  DD  + ++LVDMYAKC  P +AR VFD++  +N
Sbjct: 157 ALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRVFDAMPERN 216

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
            VSW ++++ Y ++G            PV                    +A   F+EM  
Sbjct: 217 VVSWNSLITCYEQNG------------PVG-------------------EALVLFVEMMA 245

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALG-YESCLFISNAIVDMYAKC--- 286
            G    D + LSS++ ACA  A    G+Q+H  ++        + ++NA+VDMYAKC   
Sbjct: 246 TGF-FPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRT 304

Query: 287 ----------------------------SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHG 318
                                       +++  A+ +F +M  K+V++W  +I   AQ+G
Sbjct: 305 WEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNG 364

Query: 319 QAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE-----DYGITP 373
           + EE + L+ ++    + P   T+  ++ AC ++ ++  G++    +++     D+G   
Sbjct: 365 EEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPES 424

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
            +     L+D+  ++G +D+   + + M    D  +W A++
Sbjct: 425 DVFVGNSLVDMYLKTGSIDDGAKVFERMAAR-DNVSWNAMI 464


>gi|302805077|ref|XP_002984290.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
 gi|300148139|gb|EFJ14800.1| hypothetical protein SELMODRAFT_119978 [Selaginella moellendorffii]
          Length = 448

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/440 (43%), Positives = 273/440 (62%), Gaps = 2/440 (0%)

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
           +V  T++++ Y R     +A  +FE+ P ++   W A+V+   Q     +A   F  M++
Sbjct: 11  TVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEALEIFQRMQQ 70

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290
           EGV       +S ++ ACA+ + L LG+ IH  ++A G +  L ++ A+V+MYAKC  ++
Sbjct: 71  EGVKTGSATFIS-VLEACASTSALALGRVIHQNLVANGLDRELIVATALVNMYAKCGKLV 129

Query: 291 AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350
            A+++F +M   DVV+WT+I+ G+AQHG  EE+  L   M   G+KPN VTF+ L++ACS
Sbjct: 130 EAREVFDQMEGMDVVAWTAIVAGSAQHGHIEESKDLMRRMELEGIKPNNVTFLSLVFACS 189

Query: 351 HVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTW 410
           H G + + R  F +M  D+G  P  +H+ C++DLL R G L+EA+ +I  MPFEP    W
Sbjct: 190 HSGYLDEARDCFIAMA-DHGFFPLPEHFRCVIDLLGRGGRLEEAQEVIDTMPFEPGLTAW 248

Query: 411 AALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVM 470
             +LSAC+  ++       A     ++P  PS+Y+L+SN+YA+   W  V KVR+LM   
Sbjct: 249 LTMLSACRLQKDVLRAEIAAEKCYEIEPTRPSAYLLMSNLYAALERWDDVKKVRRLMERR 308

Query: 471 EVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDM 530
            VKKEPG S IE     H F A   SHP KD I+E L +L  E+K  GYVPDTS VLH++
Sbjct: 309 GVKKEPGLSCIEVKNRLHEFGAANKSHPQKDLIYEELRKLTLEIKEAGYVPDTSLVLHNV 368

Query: 531 EQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVV 590
           +++ K+  LF HSERLAV YGL+ + PGT L VV NLR+C DCH   K IS I+ REIVV
Sbjct: 369 DEETKQATLFHHSERLAVVYGLINTPPGTSLCVVNNLRMCSDCHTAFKYISTISNREIVV 428

Query: 591 RDATRYHHFKDGKCSCNDFW 610
           RDA R+H F  G CSC D+W
Sbjct: 429 RDANRFHTFATGGCSCKDYW 448



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/206 (30%), Positives = 107/206 (51%), Gaps = 5/206 (2%)

Query: 31  KLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTIS 90
           K+GL     +  +L++ YG+C  +  A  + E +P +D ++W +I+TAY Q    ++ + 
Sbjct: 4   KVGLEAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKEALE 63

Query: 91  IFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMY 150
           IF  M   + ++     F S+++AC S  A  LG+ +H   V +    + +V ++LV+MY
Sbjct: 64  IFQRMQQ-EGVKTGSATFISVLEACASTSALALGRVIHQNLVANGLDRELIVATALVNMY 122

Query: 151 AKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG---RKKDAMEIFEQAPVR-NLFLWT 206
           AKCG    AR VFD ++  + V+WTA+++  A+ G     KD M   E   ++ N   + 
Sbjct: 123 AKCGKLVEAREVFDQMEGMDVVAWTAIVAGSAQHGHIEESKDLMRRMELEGIKPNNVTFL 182

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREG 232
           +LV     S    +A   FI M   G
Sbjct: 183 SLVFACSHSGYLDEARDCFIAMADHG 208



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 97/192 (50%), Gaps = 3/192 (1%)

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           +V  +G E+   +  ++V+MY +C  +  A+ +F R+  KD ++W +I+   AQ G  +E
Sbjct: 1   MVEKVGLEAETVVGTSLVNMYGRCHSLGNARLVFERIPCKDAITWNAIVTAYAQDGYGKE 60

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L ++  M   GVK    TF+ ++ AC+    +  GR + ++++ + G+   L   T L+
Sbjct: 61  ALEIFQRMQQEGVKTGSATFISVLEACASTSALALGRVIHQNLVAN-GLDRELIVATALV 119

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           ++ ++ G L EA  +   M    D   W A+++    H + E    +    + L+   P+
Sbjct: 120 NMYAKCGKLVEAREVFDQME-GMDVVAWTAIVAGSAQHGHIEESKDLMRR-MELEGIKPN 177

Query: 443 SYILLSNVYASA 454
           +   LS V+A +
Sbjct: 178 NVTFLSLVFACS 189



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 78/181 (43%), Gaps = 12/181 (6%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L  CA        + +H  ++  GL +   +   L++ Y KC  +  A  + ++M 
Sbjct: 80  FISVLEACASTSALALGRVIHQNLVANGLDRELIVATALVNMYAKCGKLVEAREVFDQME 139

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
             D V+W +I+    Q    +++  +   M  L+ ++P++  F SLV AC   G      
Sbjct: 140 GMDVVAWTAIVAGSAQHGHIEESKDLMRRM-ELEGIKPNNVTFLSLVFACSHSGYL---D 195

Query: 126 QVHACFVLSPFCDDDVVK-----SSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLS 179
           +   CF+     D            ++D+  + G    A+ V D++  +  ++ W  MLS
Sbjct: 196 EARDCFI--AMADHGFFPLPEHFRCVIDLLGRGGRLEEAQEVIDTMPFEPGLTAWLTMLS 253

Query: 180 A 180
           A
Sbjct: 254 A 254


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/602 (34%), Positives = 324/602 (53%), Gaps = 34/602 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           ++ C    +    K  H+  IKL L     +   L++ Y +   ++ AH + EE+P ++ 
Sbjct: 120 VKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNS 179

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V W  ++  +   +       +FS M      + D FV   L++ACG++ A + GK  H 
Sbjct: 180 VIWGVMIKGHLNFSEEFGVFELFSRMRR-SGFELDPFVVEGLIQACGNVYAGKEGKTFHG 238

Query: 130 CFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
             +   F D +  +++SLVDMY KCG  + A                             
Sbjct: 239 LCIKKNFIDSNFFLQTSLVDMYMKCGFLDFA----------------------------- 269

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
             +++FE+   R++ +W+A+++G  ++   +++   F +M  + V   + +  +SIV AC
Sbjct: 270 --LKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVT-PNSVTFASIVLAC 326

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           ++   L+ G+ +HG +I  G E  +    + +DMYAKC  I+ A  +F ++  K+V SW+
Sbjct: 327 SSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSWS 386

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++I G   HG   E L L+ EM S    PN VTFV ++ ACSH G + +G   FKSM  D
Sbjct: 387 TMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSRD 446

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           YGITP  +HY C++DLL R+G +DEA + I  MP EP    W ALL AC+ HR  E+   
Sbjct: 447 YGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAEE 506

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
           VA  LL L+ +    Y++LSN+YA   MW+ V K R  M    + K  G++ IE  +  +
Sbjct: 507 VAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEIEEKLY 566

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
           +F + +       +I  L   L   M+  GYVPD   VLHD++ + K+  L  HSE+LA+
Sbjct: 567 LFSSEDRFAYKNTQIESLWNSLKERMRELGYVPDLRFVLHDVDDEVKQEVLCGHSEKLAI 626

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
            +GLL S  G  +R+ KN+RVCGDCH   K IS IT+R+I++RD  R+HH +DG CSC D
Sbjct: 627 VFGLLNSGEGMPIRITKNMRVCGDCHTASKFISLITRRKIIMRDVKRFHHVQDGVCSCGD 686

Query: 609 FW 610
           +W
Sbjct: 687 YW 688



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 57/240 (23%), Positives = 104/240 (43%), Gaps = 2/240 (0%)

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
           +  AY + G    A + F      NL  W  +++   +++   D    F  M +EG  +V
Sbjct: 53  IFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEG-KLV 111

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           D   L   V AC   ++ +  K  H L I L  E   +++ A++++Y +   +  A  +F
Sbjct: 112 DSFNLVFAVKACFGLSLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVF 171

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
             +  K+ V W  +I G     +      L+  M  +G + +     GLI AC +V    
Sbjct: 172 EEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGK 231

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           +G+      I+   I  +    T L+D+  + G LD A  L + + +  D   W+A+++ 
Sbjct: 232 EGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYR-DVVVWSAIIAG 290


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 191/588 (32%), Positives = 328/588 (55%), Gaps = 32/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K++H   ++ G      +   L+D Y K   +  A  L E M +R+ V+W +I++ Y+  
Sbjct: 142 KSVHCFWVRGGFEGNVFVETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDH 201

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ I +F+ M     L  D +   SL+ A  S+G  ++G  +H   + + + +D  +
Sbjct: 202 GFSEEAIDLFNLMRR-KGLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDKHI 260

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           K++L+D+Y                   N V                DA  +F +  V+++
Sbjct: 261 KTALMDIYVS----------------HNCVD---------------DAHRVFSEMSVKDV 289

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WT +++G    R+   A   F +M       +D + L  I+ +C++   L+ G+++H 
Sbjct: 290 AAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHA 349

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L I   + + +F+ +A++DMYA C ++  AK  F  M  KDVV W ++I G   +G   +
Sbjct: 350 LAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTD 409

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L+ +M  +G+ P+E TFV ++YACSH G+V +G ++F  M++   + P+LQHY C++
Sbjct: 410 AIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVKTSHVIPNLQHYACVI 469

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+L R+G LD A + I  MPF+PD   ++ LL AC+ H N ++G  ++  +  ++P D  
Sbjct: 470 DILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGHEISQKIFEMEPNDAG 529

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
            Y+LLSN+YA A  W+ V   R  +    +KK+PG+S IE  +  + F AGE  HP   +
Sbjct: 530 YYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQEIYTFMAGEKDHPQYFK 589

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I  +L  L  ++K+ GYVP+T+ +L D+    K+  L+ HSE++A+A+GL+++ P T++R
Sbjct: 590 IEGILKGLILKIKKAGYVPNTNVLLQDVSDDMKKDILYHHSEKMAIAFGLMRTKPETIIR 649

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + KNLR C DCH   K +S++  R +V++DA R+H F+DG CSC D+W
Sbjct: 650 ITKNLRTCDDCHTASKFVSKVFGRVLVIKDANRFHVFQDGVCSCRDYW 697



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/434 (26%), Positives = 217/434 (50%), Gaps = 41/434 (9%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           ++ +HAQII  GL     L N+L++AY  C L+  A  +    P ++ VSW  +++   +
Sbjct: 40  LQQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAK 99

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
            +   + I +F  M+ +   +P+    +S++ A  +LG  R+ K VH  +V   F  +  
Sbjct: 100 NDCFVEAIDVFREMI-MGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVF 158

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V+++LVDMY+K G    AR +F+S+  +N V+W A++S Y+  G  ++A+++F      N
Sbjct: 159 VETALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLF------N 212

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           L                         MRR+G+ +VD   + S++ A  +   L++G  IH
Sbjct: 213 L-------------------------MRRKGL-LVDFYTIMSLIPASLSVGCLQVGTGIH 246

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
           G +I  GYE+   I  A++D+Y   + +  A  +F  M  KDV +WT ++ G +     +
Sbjct: 247 GFIIRTGYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAWTLMLTGFSSGRHWD 306

Query: 322 ETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
             +  +++M+    +K + +  +G++ +CSH G + +GR++    I+      ++   + 
Sbjct: 307 RAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQGRRVHALAIKTC-FANNIFVGSA 365

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE- 439
           ++D+ +  G+L++A+     M  E D   W A+++    +     GT   +  L +K   
Sbjct: 366 VIDMYANCGNLEDAKRFFYGMG-EKDVVCWNAMIAG---NGMNGYGTDAIDLFLQMKGSG 421

Query: 440 -DPSSYILLSNVYA 452
            DP     +S +YA
Sbjct: 422 LDPDESTFVSVLYA 435



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 146/295 (49%), Gaps = 12/295 (4%)

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
           N+    ++++AY   G   DA +IF   P +N+  WT L+SGL ++    D F   I++ 
Sbjct: 55  NTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKN----DCFVEAIDVF 110

Query: 230 RE---GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
           RE   G    + + +SS++ A AN  ++ + K +H   +  G+E  +F+  A+VDMY+K 
Sbjct: 111 REMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKF 170

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             +  A+ +F  M  ++VV+W +I+ G + HG +EE + L++ M   G+  +  T + LI
Sbjct: 171 GCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLI 230

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPD 406
            A   VG +  G  +   +I   G        T L+D+      +D+A  +   M  + D
Sbjct: 231 PASLSVGCLQVGTGIHGFIIRT-GYENDKHIKTALMDIYVSHNCVDDAHRVFSEMSVK-D 288

Query: 407 EPTWAALLSACKHHRNTEMGTRVANHLL---SLKPEDPSSYILLSNVYASAAMWQ 458
              W  +L+     R+ +   +  N +L   +LK +  +   +LS+   S A+ Q
Sbjct: 289 VAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCSHSGALQQ 343



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 3/196 (1%)

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           +QIH  +I  G     F+SN++++ Y  C  +  AK IF     K+VVSWT +I G A++
Sbjct: 41  QQIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKN 100

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQH 377
               E + ++ EM+    KPN VT   ++ A +++GL+   + +    +   G   ++  
Sbjct: 101 DCFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRG-GFEGNVFV 159

Query: 378 YTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLK 437
            T L+D+ S+ G +  A  L ++M  E +  TW A++S    H  +E    + N L+  K
Sbjct: 160 ETALVDMYSKFGCMGVARQLFESMS-ERNVVTWNAIVSGYSDHGFSEEAIDLFN-LMRRK 217

Query: 438 PEDPSSYILLSNVYAS 453
                 Y ++S + AS
Sbjct: 218 GLLVDFYTIMSLIPAS 233



 Score = 43.1 bits (100), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 92/239 (38%), Gaps = 30/239 (12%)

Query: 14  ARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWA 73
            R   AL +KT  A  I +G        + +ID Y  C  ++ A      M ++D V W 
Sbjct: 344 GRRVHALAIKTCFANNIFVG--------SAVIDMYANCGNLEDAKRFFYGMGEKDVVCWN 395

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           +++            I +F  M     L PD   F S++ AC   G    G Q+    V 
Sbjct: 396 AMIAGNGMNGYGTDAIDLFLQMKG-SGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVK 454

Query: 134 SPFCDDDVVK-SSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGRKKDAM 191
           +     ++   + ++D+  + G  + A +  +++  +     ++ +L A    G  K   
Sbjct: 455 TSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGH 514

Query: 192 E----IFEQAP--------VRNLFLWTALVSGLVQSRNEI-------DAFYSFIEMRRE 231
           E    IFE  P        + N++       G+  +R  +       D  +S IE+ +E
Sbjct: 515 EISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQE 573


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/585 (35%), Positives = 333/585 (56%), Gaps = 43/585 (7%)

Query: 12  VCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVS 71
           V   H  AL  + LH   +  G  +   + N ++  Y K D V    +L  EMP+ D VS
Sbjct: 254 VVGLHDFALG-QQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVS 312

Query: 72  WASILTAYNQANLPQKTISIFSTM--LALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +  ++++Y+QA   ++++++F  M  +  D+    +F FA+++    +L + ++G+QVH 
Sbjct: 313 YNVVISSYSQAEQYEESLNLFREMQCMGFDR---RNFPFATMLSIAANLSSLQVGRQVH- 368

Query: 130 CFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           C  +    D  + V +SLVDMYAKC + + A  +F S+  +++VS               
Sbjct: 369 CQAIVATADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVS--------------- 413

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDI-VDPLVLSSIVGA 247
                           WTAL+SG VQ          F +MR  G ++  D    ++++ A
Sbjct: 414 ----------------WTALISGYVQKGLHGAGLKLFTKMR--GANLRADQSTFATVLKA 455

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
            A FA L LGKQ+H  +I  G    +F  + +VDMYAKC  I  A  +F  M  ++ VSW
Sbjct: 456 SAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSW 515

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
            ++I   A +G  E  +  + +M+ +G++P+ V+ +G++ ACSH G V +G + F++M  
Sbjct: 516 NALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLIACSHCGFVEQGTEFFQAMSP 575

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
            YGITP  +HY C+LDLL R+G   EAE L+  MPFEPDE  W+++L+AC+ ++N  +  
Sbjct: 576 IYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAE 635

Query: 428 RVANHLLSL-KPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
           R A  L S+ K  D ++Y+ +SN+YA+A  W++V  V+K M    +KK P YS++E    
Sbjct: 636 RAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKKAMRERGIKKVPAYSWVEVNHK 695

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERL 546
            H+F + + +HP  DEI + + EL  E++R GY PDTSSV+ D++++ K   L +HSERL
Sbjct: 696 IHVFSSNDQTHPNGDEIVKKINELTTEIEREGYKPDTSSVVQDIDEQMKIESLKYHSERL 755

Query: 547 AVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVR 591
           AVA+ L+ +  G  + V+KNLR C DCH  +K+IS+I KR I  +
Sbjct: 756 AVAFALISTPEGCPIVVMKNLRACRDCHAAIKLISKIVKRVITTQ 800



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 164/379 (43%), Gaps = 41/379 (10%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           NT+I  Y K   +  A HL + MP R  V+W  ++  Y   N   +   +F  M     L
Sbjct: 79  NTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTL 138

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV---VKSSLVDMYAKCGLPNN 158
            PD+  F +L+  C          QVHA  V   F D ++   V + L+  Y +    + 
Sbjct: 139 -PDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGF-DTNLFLTVCNVLLKSYCEVRRLDL 196

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A  +F+ I  K+SV++  +++ Y + G                  L+T            
Sbjct: 197 ACVLFEEILDKDSVTFNTLITGYEKDG------------------LYT------------ 226

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            +A + F++MR+ G    D    S ++ A        LG+Q+HGL +  G+     + N 
Sbjct: 227 -EAIHLFLKMRQSGHKPSD-FTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQ 284

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           I+  Y+K   ++  +++F  M   D VS+  +I   +Q  Q EE+L L+ EM   G    
Sbjct: 285 ILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRR 344

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY-TCLLDLLSRSGHLDEAENL 397
              F  ++   +++  +  GR++    I       S+ H    L+D+ ++    DEAE +
Sbjct: 345 NFPFATMLSIAANLSSLQVGRQVHCQAI--VATADSILHVGNSLVDMYAKCEMFDEAELI 402

Query: 398 IKAMPFEPDEPTWAALLSA 416
            K++  +    +W AL+S 
Sbjct: 403 FKSLS-QRSTVSWTALISG 420



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 137/295 (46%), Gaps = 7/295 (2%)

Query: 125 KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
           ++V A  + + F  D    +  V+   + G  + A  V+D +  KN+VS   M+S Y + 
Sbjct: 29  RRVDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMISGYVKM 88

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID-AFYSFIEMRREGVDIVDPLVLSS 243
           G    A  +F+  P R +  WT L+ G     N  D AF  F +M R    + D +  ++
Sbjct: 89  GDLSSARHLFDAMPDRTVVTWTILM-GWYAGNNHFDEAFKLFRQMCRS-CTLPDYVTFTT 146

Query: 244 IVGACANFAVLELGKQIHGLVIALGYESCLFIS--NAIVDMYAKCSDIIAAKDIFGRMRR 301
           ++  C +        Q+H   + LG+++ LF++  N ++  Y +   +  A  +F  +  
Sbjct: 147 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILD 206

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           KD V++ ++I G  + G   E + L+ +M  +G KP++ TF G++ A   +     G++L
Sbjct: 207 KDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFALGQQL 266

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
               +   G +        +L   S+   + E  NL   MP E D  ++  ++S+
Sbjct: 267 HGLSVTT-GFSRDASVGNQILHFYSKHDRVLETRNLFNEMP-ELDFVSYNVVISS 319



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 7/181 (3%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S +   L+  A     L  K LHA II+ G  +     + L+D Y KC  ++ A  + EE
Sbjct: 447 STFATVLKASAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKCGSIKDAVQVFEE 506

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
           MP R+ VSW ++++AY      +  I  F+ M+    LQPD      ++ AC   G    
Sbjct: 507 MPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQ-SGLQPDSVSILGVLIACSHCGFVEQ 565

Query: 124 GKQVHACFVLSPFCDDDVVK---SSLVDMYAKCGLPNNARAVFDSIKLK-NSVSWTAMLS 179
           G +      +SP       K   + ++D+  + G    A  + D +  + + + W+++L+
Sbjct: 566 GTEFFQ--AMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPDEIMWSSVLN 623

Query: 180 A 180
           A
Sbjct: 624 A 624


>gi|413938666|gb|AFW73217.1| hypothetical protein ZEAMMB73_724608 [Zea mays]
          Length = 610

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/573 (36%), Positives = 318/573 (55%), Gaps = 13/573 (2%)

Query: 42  NTLIDAYGKCD-LVQYA--HHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
           N L+  Y K   L++ A    L + +P  D VS+ ++L+ +           +FSTM   
Sbjct: 47  NCLLAGYAKASGLIRLADARRLFDSIPHPDTVSYNTLLSCHFACGDIDGARRVFSTMPVK 106

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           D        + ++V      GA+   ++  A F + P   + V  +++V   A  G    
Sbjct: 107 DVTS-----WNTMVSGLSKNGAS---EEAAAMFRIMPV-RNAVSWNAMVAALACSGDMGA 157

Query: 159 ARAVFDSIKLK-NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRN 217
           A  +F +   K +++ WTAM+S Y  +G  + AME F   PVRNL  W A+V+G V++  
Sbjct: 158 AEDLFRNAPEKTDAILWTAMVSGYMDTGNVQKAMEFFGAMPVRNLVSWNAVVAGYVKNSR 217

Query: 218 EIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
             DA   F  M  + +   +   LSS++  C+N + L  G+Q+H   + L     + +  
Sbjct: 218 ADDALRVFKTMVEDSIVQPNASTLSSVLLGCSNLSALGFGRQVHQWCMKLPLSRNVTVGT 277

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKP 337
           +++ MY KC D+  A  +F  M  KD+V+W ++I G AQHG   + + L+++M   GV P
Sbjct: 278 SLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQHGGGMQAIKLFEKMKDEGVVP 337

Query: 338 NEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENL 397
           + +T + ++ AC H GL   G + F++M E Y I P + HY+C++DLL R+G L+ A N+
Sbjct: 338 DWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQIDHYSCMVDLLCRAGLLERAVNM 397

Query: 398 IKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMW 457
           I +MPFEP    +  LL+AC+ ++N E     A  L+   P++  +Y+ L+N+YA A  W
Sbjct: 398 IHSMPFEPHPSAYGTLLTACRVYKNLEFAEFAARKLIEQDPQNAGAYVQLANIYAVANKW 457

Query: 458 QHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRR 517
             VS+VR+ M    V K PGYS++E     H F + +  HP    I + L  L   MK  
Sbjct: 458 ADVSRVRRWMKDNAVVKTPGYSWMEIKGVRHEFRSNDRLHPQLGLIHDKLDRLQMLMKAM 517

Query: 518 GYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVM 577
           GYVPD    LHD+E   K + L  HSE+LA+A+GL+ + PG  LR+ KNLR+CGDCH   
Sbjct: 518 GYVPDLDFALHDVEDSLKSQMLMRHSEKLAIAFGLISTSPGMTLRIFKNLRICGDCHNAA 577

Query: 578 KMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           K+IS+I  REI++RD TR+HHF+ G CSC D+W
Sbjct: 578 KLISKIEDREIILRDTTRFHHFRGGHCSCGDYW 610



 Score = 46.2 bits (108), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 8/151 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H   +KL L +   +  +L+  Y KC  +  A  + +EM  +D V+W ++++ Y Q 
Sbjct: 258 RQVHQWCMKLPLSRNVTVGTSLLSMYCKCGDLNDACKVFDEMSTKDIVAWNAMISGYAQH 317

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ----VHACFVLSPFCD 138
               + I +F  M   + + PD     +++ AC   G    G Q    +   + + P  D
Sbjct: 318 GGGMQAIKLFEKMKD-EGVVPDWITLLAVLTACIHTGLCDFGIQCFETMQEAYKIEPQID 376

Query: 139 DDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
                S +VD+  + GL   A  +  S+  +
Sbjct: 377 H---YSCMVDLLCRAGLLERAVNMIHSMPFE 404


>gi|224115100|ref|XP_002332237.1| predicted protein [Populus trichocarpa]
 gi|222831850|gb|EEE70327.1| predicted protein [Populus trichocarpa]
          Length = 444

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/442 (41%), Positives = 277/442 (62%), Gaps = 1/442 (0%)

Query: 169 KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEM 228
           K+ VS TAM++ YA+ G   +A  +F+    R+   W  ++ G  Q     +    F +M
Sbjct: 4   KSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQM 63

Query: 229 RREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSD 288
               V   +  VL+ ++ AC     LE G+ +H  +   G    + +  +++DMY+KC  
Sbjct: 64  LNAKVRPNEVTVLA-VLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGS 122

Query: 289 IIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYA 348
           +  A+ +F R+  KDVV+W S++VG A HG +++ L L+ EM   G +P ++TF+G++ A
Sbjct: 123 LEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLNA 182

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           CSH GLV +G K F SM ++YGI P ++HY C+++LL R+G+L+EA  L+K M  + D  
Sbjct: 183 CSHAGLVSEGWKFFYSMKDEYGIEPKVEHYGCMVNLLGRAGYLEEAYELVKNMEIDQDPV 242

Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
            W  LL AC+ H N  +G ++A +L+S    +  +Y+LLSN+YA+A  W+ V++VR LM 
Sbjct: 243 LWGTLLGACRLHGNIALGEQIAEYLVSQNLANSGTYVLLSNIYAAAGNWEGVARVRTLMK 302

Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH 528
               +KEPG S IE     H F AG+  HP   EI+E+L E++  +K  GY P T  VLH
Sbjct: 303 ESGFEKEPGCSSIEVNNKVHEFLAGDLRHPKSREIYEMLEEINGWLKTHGYTPQTDIVLH 362

Query: 529 DMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREI 588
           D+E  +KER L  HSE+LA+A+GL+ + PGT +++VKNLRVC DCH V K+IS+IT R++
Sbjct: 363 DLEDAQKERSLGVHSEKLALAFGLITTKPGTTIKIVKNLRVCADCHAVTKLISKITGRKV 422

Query: 589 VVRDATRYHHFKDGKCSCNDFW 610
           V+RD  R+HHF +G CSC D+W
Sbjct: 423 VMRDRNRFHHFVNGLCSCGDYW 444



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/153 (32%), Positives = 85/153 (55%), Gaps = 1/153 (0%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           +I  Y K  ++  A  L + + +RD + W  ++  Y Q  LP + + +F  ML   K++P
Sbjct: 12  MITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQMLNA-KVRP 70

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           +     +++ ACG  GA   G+ VH+    +    +  V +SL+DMY+KCG   +AR VF
Sbjct: 71  NEVTVLAVLSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVF 130

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
           + I  K+ V+W +M+  YA  G  +DA+ +F++
Sbjct: 131 ERISNKDVVAWNSMVVGYAMHGFSQDALRLFKE 163



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 66/246 (26%), Positives = 112/246 (45%), Gaps = 46/246 (18%)

Query: 270 ESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDE 329
           E  L    A++  YAK   I  A+ +F  +  +D + W  +I G AQHG   E L L+ +
Sbjct: 3   EKSLVSLTAMITCYAKYGMIDEARVLFDGLEERDAICWNVMIDGYAQHGLPNEGLLLFRQ 62

Query: 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389
           M++A V+PNEVT + ++ AC   G +  GR +  S IE+ GI  +++  T L+D+ S+ G
Sbjct: 63  MLNAKVRPNEVTVLAVLSACGQTGALETGRWV-HSYIENNGIGINVRVGTSLIDMYSKCG 121

Query: 390 HLDEAE-------------------------------NLIKAM---PFEPDEPTWAALLS 415
            L++A                                 L K M    ++P + T+  +L+
Sbjct: 122 SLEDARLVFERISNKDVVAWNSMVVGYAMHGFSQDALRLFKEMCMIGYQPTDITFIGVLN 181

Query: 416 ACKHHRNTEMGTRVANHLLSLKPE---DP--SSYILLSNVYASAAMWQHVSKVRKLMSVM 470
           AC H      G +      S+K E   +P    Y  + N+   A    ++ +  +L+  M
Sbjct: 182 ACSHAGLVSEGWKF---FYSMKDEYGIEPKVEHYGCMVNLLGRAG---YLEEAYELVKNM 235

Query: 471 EVKKEP 476
           E+ ++P
Sbjct: 236 EIDQDP 241



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 80/198 (40%), Gaps = 9/198 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C +     T + +H+ I   G+     +  +LID Y KC  ++ A  + E +  +D 
Sbjct: 79  LSACGQTGALETGRWVHSYIENNGIGINVRVGTSLIDMYSKCGSLEDARLVFERISNKDV 138

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           V+W S++  Y      Q  + +F  M  +   QP    F  ++ AC   G    G +   
Sbjct: 139 VAWNSMVVGYAMHGFSQDALRLFKEMCMIG-YQPTDITFIGVLNACSHAGLVSEGWKFFY 197

Query: 130 C----FVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSAYARS 184
                + + P  +       +V++  + G    A  +  ++++ ++ V W  +L A    
Sbjct: 198 SMKDEYGIEPKVEH---YGCMVNLLGRAGYLEEAYELVKNMEIDQDPVLWGTLLGACRLH 254

Query: 185 GRKKDAMEIFEQAPVRNL 202
           G      +I E    +NL
Sbjct: 255 GNIALGEQIAEYLVSQNL 272


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/605 (33%), Positives = 323/605 (53%), Gaps = 42/605 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            + CA   + L    LH  +IK G      +  +LI  Y KC  +  A  + +E     +
Sbjct: 63  FKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRN 122

Query: 70  --VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
             V + +++  Y+  +     + +F  M   + +  +      L+  C        G  +
Sbjct: 123 LAVCYNALIAGYSLNSRFSDAVLLFRQMRK-EGVSVNAVTMLGLIPVCAGPIHLGFGTSL 181

Query: 128 HACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRK 187
           HAC V      D  V + L+ MY +CG  + AR                           
Sbjct: 182 HACSVRFGLDGDLSVGNCLLTMYVRCGSVDFAR--------------------------- 214

Query: 188 KDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGA 247
               ++F+  P + L  W A++SG  Q+         + +M   G+ + DP+ L  ++ +
Sbjct: 215 ----KLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGI-VPDPVTLVGVLSS 269

Query: 248 CANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSW 307
           CA+      G+++   +   G+    F+ NA+++MYA+C +++ A+ IF  M  K+V+SW
Sbjct: 270 CAHLGAHAAGREVEQRIELSGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISW 329

Query: 308 TSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           T+II G   HGQ E  + L+DEM+S+   P+   FV ++ ACSH GL  KG   F +M  
Sbjct: 330 TAIIAGYGMHGQGELAVQLFDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMER 389

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
           DYG+ P  +HY+C++DLL R+G L+EA  LI +M  EPD   W ALL ACK HRN E+  
Sbjct: 390 DYGLQPGPEHYSCVVDLLGRAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAE 449

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
                ++  +P +   Y+LLSN+++ A   + + +VR +M   ++KKEPG SY+E+    
Sbjct: 450 LAFEKVIEFEPTNIGYYVLLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYVEYQGRI 509

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKE--RQLFWHSER 545
           H+F AG+ +HP   EI+ +L  L+  +KRRG   D     +D E + +E    +  HSE+
Sbjct: 510 HLFLAGDRTHPQAQEIYHMLDGLEDIIKRRGGSND-----NDQESRNEELITGMGVHSEK 564

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+A+GL+ + PGT + V+KNLRVCGDCH+ +K++S I  R++VVRDATR+HHFK+G CS
Sbjct: 565 LAIAFGLINTEPGTEITVIKNLRVCGDCHLFLKLVSEIVDRQLVVRDATRFHHFKNGVCS 624

Query: 606 CNDFW 610
           C D+W
Sbjct: 625 CKDYW 629



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 184/386 (47%), Gaps = 41/386 (10%)

Query: 53  LVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLV 112
           L  YA+  L+   Q    SW + L    +    Q+ ++++  MLA     P+ F F    
Sbjct: 7   LFPYANKWLD--LQNTTASWNARLRELARQRHFQEALNLYCQMLASGD-SPNAFTFPFAF 63

Query: 113 KACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKN-- 170
           K+C SL     G Q+H   + +    +  V++SL+ MY KC    +AR VFD        
Sbjct: 64  KSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRNL 123

Query: 171 SVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRR 230
           +V + A+++ Y+ + R  DA+ +F Q                               MR+
Sbjct: 124 AVCYNALIAGYSLNSRFSDAVLLFRQ-------------------------------MRK 152

Query: 231 EGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDII 290
           EGV  V+ + +  ++  CA    L  G  +H   +  G +  L + N ++ MY +C  + 
Sbjct: 153 EGVS-VNAVTMLGLIPVCAGPIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVD 211

Query: 291 AAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS 350
            A+ +F  M  K +++W ++I G AQ+G A   L LY +M   G+ P+ VT VG++ +C+
Sbjct: 212 FARKLFDGMPEKGLITWNAMISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCA 271

Query: 351 HVGLVGKGRKLFKSM-IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPT 409
           H+G    GR++ + + +  +G  P L++   L+++ +R G+L +A  +   M  E +  +
Sbjct: 272 HLGAHAAGREVEQRIELSGFGFNPFLKN--ALINMYARCGNLVKARAIFDGMT-EKNVIS 328

Query: 410 WAALLSACKHHRNTEMGTRVANHLLS 435
           W A+++    H   E+  ++ + ++S
Sbjct: 329 WTAIIAGYGMHGQGELAVQLFDEMIS 354


>gi|357128440|ref|XP_003565881.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Brachypodium distachyon]
          Length = 682

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 209/588 (35%), Positives = 328/588 (55%), Gaps = 33/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +  H   +K GL ++  + N ++  Y +C  V+ A  + E +   D  ++ S++  +   
Sbjct: 128 RQCHGYAVKSGLQEHPYVCNAVLHMYCQCAHVEDAVKVFENVSGFDIFAFNSMINGFLDL 187

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                +I I  +M+  +  Q DH  + +++  C S     LG QVHA  +      +  V
Sbjct: 188 GEFDGSIRIVRSMVG-EVEQWDHVSYVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYV 246

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            S+LVDMY KC                                  +DA   FE  P +N+
Sbjct: 247 GSALVDMYGKCDCA-------------------------------RDAHSAFEVLPEKNV 275

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             WTA+++   Q+    DA   F+++  EGV   +    +  + +CA  A L+ G  +  
Sbjct: 276 VSWTAVMTAYTQNERFEDALQLFLDLEIEGVR-PNEFTYAVALNSCAGLAALKNGNALSA 334

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             +  G+   L + NA+++MY+K   I  A  +F  M  +DVVSW S+I+G A HG A E
Sbjct: 335 SAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHGLARE 394

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + ++ +M+ A + P+ VTFVG++ AC+ +GLV +G      M+++ GI P  +HYTC++
Sbjct: 395 AMCVFHDMLLAEIVPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPGREHYTCMV 454

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
            LL R+G LDEAE  I +     D   W +LLS+C+ ++N  +G RVA  +L LKP D  
Sbjct: 455 GLLCRAGRLDEAEQFILSNCIGTDVVAWKSLLSSCQVYKNYGLGHRVAEQILQLKPNDVG 514

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +Y+LLSN+YA A  W  V KVRKLM    V+KEPG S+I+ G   H+F + + +H   ++
Sbjct: 515 TYVLLSNMYAKANRWDGVVKVRKLMRERGVRKEPGVSWIQVGSEVHVFTSEDKNHKWINQ 574

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I   L EL  ++K  GYVP+ + VLHD+E ++KE  L +HSE++A+A+GL+ S  G  +R
Sbjct: 575 ITIKLKELIGQIKVIGYVPNCAVVLHDVEAEQKEEHLMYHSEKMALAFGLIHSPEGETIR 634

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++KNLR+C DCH+ +K+IS +T+R+IVVRD  R+H   DG CSC+D+W
Sbjct: 635 IMKNLRICDDCHVAIKLISVVTRRKIVVRDTVRFHCIDDGVCSCDDYW 682



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 107/459 (23%), Positives = 205/459 (44%), Gaps = 43/459 (9%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           T K +HAQ+I+   H      N LI  YGKC  +  A  + + MP R+ VS   +++ Y 
Sbjct: 29  TGKAIHAQMIRAA-HFDVIQHNHLIAFYGKCGRLGLARQMFDAMPSRNAVSGNLLMSGYA 87

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
            A      ++    +L       + +V ++ + A   + +  +G+Q H   V S   +  
Sbjct: 88  SAGRHSDALA----LLKAADFSLNEYVLSTALSAAAHVRSYGMGRQCHGYAVKSGLQEHP 143

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V ++++ MY +C                                  +DA+++FE     
Sbjct: 144 YVCNAVLHMYCQCA-------------------------------HVEDAVKVFENVSGF 172

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           ++F + ++++G +    E D     +      V+  D +   +++G CA+   L LG Q+
Sbjct: 173 DIFAFNSMINGFLD-LGEFDGSIRIVRSMVGEVEQWDHVSYVAVLGHCASTKELLLGCQV 231

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H   +    E  +++ +A+VDMY KC     A   F  +  K+VVSWT+++    Q+ + 
Sbjct: 232 HAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLPEKNVVSWTAVMTAYTQNERF 291

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           E+ L L+ ++   GV+PNE T+   + +C+ +  +  G  L  S ++  G   +L     
Sbjct: 292 EDALQLFLDLEIEGVRPNEFTYAVALNSCAGLAALKNGNALSASAMKT-GHWGALSVCNA 350

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           L+++ S+SG + +A  +  +MP+  D  +W +++    HH        V + +  L  E 
Sbjct: 351 LMNMYSKSGSIHDAWRVFLSMPWR-DVVSWNSVIIGYAHHGLAREAMCVFHDM--LLAEI 407

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVM--EVKKEPG 477
             SY+    V  + A    V +    +++M  E+  +PG
Sbjct: 408 VPSYVTFVGVLLACAQLGLVDEGLYYLNIMMKEMGIKPG 446



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 104/189 (55%), Gaps = 1/189 (0%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  L  CA  +  L    +HAQ +K  L Q   + + L+D YGKCD  + AH   E +P
Sbjct: 212 YVAVLGHCASTKELLLGCQVHAQALKRRLEQNVYVGSALVDMYGKCDCARDAHSAFEVLP 271

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           +++ VSW +++TAY Q    +  + +F   L ++ ++P+ F +A  + +C  L A + G 
Sbjct: 272 EKNVVSWTAVMTAYTQNERFEDALQLFLD-LEIEGVRPNEFTYAVALNSCAGLAALKNGN 330

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
            + A  + +       V ++L++MY+K G  ++A  VF S+  ++ VSW +++  YA  G
Sbjct: 331 ALSASAMKTGHWGALSVCNALMNMYSKSGSIHDAWRVFLSMPWRDVVSWNSVIIGYAHHG 390

Query: 186 RKKDAMEIF 194
             ++AM +F
Sbjct: 391 LAREAMCVF 399


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 207/602 (34%), Positives = 325/602 (53%), Gaps = 34/602 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C+  +  +  +T+HA I++  L     + N+L+  Y KC+ ++    + E MP  D 
Sbjct: 355 LGACSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDV 414

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATR-LGKQVH 128
           VS   +   Y         + +FS M     ++P++    +L   C SLG     G  +H
Sbjct: 415 VSCNVLTGGYAALEDVANAMRVFSWMRG-TGIKPNYITMINLQGTCKSLGDLHSYGMPLH 473

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
           A    +    D+ + +SL+ MYA CG   ++  +F  I  K+ +SW A+++A  R GR +
Sbjct: 474 AYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGE 533

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           +A+++F  +                 + N++D F                  L+  + + 
Sbjct: 534 EAIKLFMDSQ---------------HAGNKLDRF-----------------CLAECLSSS 561

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           AN A LE G Q+HGL +  G +    + NA +DMY KC  +            +    W 
Sbjct: 562 ANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQCWN 621

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           ++I G A++G  +E    +  MVS G KP+ VTFV L+ ACSH GL+ KG   + SM   
Sbjct: 622 TLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSACSHAGLIDKGMDYYNSMAPT 681

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTR 428
           +G++P ++H  C++DLL R G   EAE  I  MP  P++  W +LLS+ + H+N ++G +
Sbjct: 682 FGVSPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPNDLIWRSLLSSSRTHKNLDIGRK 741

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSH 488
            A +LL L P D S+Y+LLSN+YA+ A W  V K+R  M  +++ K P  S+++      
Sbjct: 742 AAKNLLELDPFDDSAYVLLSNLYATNARWVDVDKLRSHMKTIKLNKRPACSWLKLKNEVS 801

Query: 489 IFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAV 548
            F  G+ SH   ++I+  L E+  +++  GYV DTSS LHD ++++KE  L+ HSE+LA+
Sbjct: 802 TFGIGDRSHMHAEKIYVKLDEILLKLREVGYVADTSSALHDTDEEQKEHNLWNHSEKLAL 861

Query: 549 AYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCND 608
           AYGLL    G+ +R+ KNLRVC DCH+V K++S +  REIV+RD  R+H FK G CSC+D
Sbjct: 862 AYGLLVVPEGSTIRIFKNLRVCADCHLVFKLVSMVFHREIVLRDPYRFHQFKHGSCSCSD 921

Query: 609 FW 610
           FW
Sbjct: 922 FW 923



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 109/442 (24%), Positives = 191/442 (43%), Gaps = 66/442 (14%)

Query: 12  VCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVS 71
           VCA   +      +H+  +  GLH   PL N L++ Y     +  A  L   M +RD +S
Sbjct: 255 VCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVIS 314

Query: 72  WASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
           W +++++Y Q+N   + +     +L  D+  P+   F+S + AC S  A   G+ +HA  
Sbjct: 315 WNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMI 374

Query: 132 VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
           +     +  ++ +SL+ MY+KC    +   VF+S+   + VS   +   YA      +AM
Sbjct: 375 LQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAM 434

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
            +F          W                      MR  G+   + + + ++ G C + 
Sbjct: 435 RVFS---------W----------------------MRGTGIK-PNYITMINLQGTCKSL 462

Query: 252 AVL-ELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
             L   G  +H  V   G  S  +I+N+++ MYA C D+ ++  IF R+  K V+SW +I
Sbjct: 463 GDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAI 522

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL--------- 361
           I    +HG+ EE + L+ +   AG K +       + + +++  + +G +L         
Sbjct: 523 IAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLSSSANLASLEEGMQLHGLSVKNGL 582

Query: 362 ------FKSMIEDYGITPSL---------------QHYTCLLDLLSRSGHLDEAENLIKA 400
                   + ++ YG    +               Q +  L+   +R G+  EAE+  K 
Sbjct: 583 DCDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQCWNTLISGYARYGYFKEAEDTFKH 642

Query: 401 MPF---EPDEPTWAALLSACKH 419
           M     +PD  T+ ALLSAC H
Sbjct: 643 MVSVGQKPDYVTFVALLSACSH 664



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 177/406 (43%), Gaps = 48/406 (11%)

Query: 27  AQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQ 86
           A ++  GL  +  + N+LI  +G    VQ A  L + M +RD +SW ++++ Y+   +  
Sbjct: 169 AHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYS 228

Query: 87  KTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSL 146
           K   + S M    +++PD     SLV  C S     LG  +H+  V S            
Sbjct: 229 KCFIVLSDMRH-GEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGL---------- 277

Query: 147 VDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWT 206
                 C +P           L N     A+++ Y+ +G+  +A  +F     R++  W 
Sbjct: 278 -----HCSVP-----------LIN-----ALVNMYSTAGKLDEAESLFRNMSRRDVISWN 316

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
            ++S  VQS + ++A  +  ++ +      + +  SS +GAC++   L  G+ IH +++ 
Sbjct: 317 TMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQ 376

Query: 267 LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLAL 326
              ++ L I N+++ MY+KC+ +   + +F  M   DVVS   +  G A        + +
Sbjct: 377 RSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMRV 436

Query: 327 YDEMVSAGVKPNEVTFVGLIYACSHVG-LVGKGRKLF-----KSMIEDYGITPSL-QHYT 379
           +  M   G+KPN +T + L   C  +G L   G  L        ++ D  IT SL   Y 
Sbjct: 437 FSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYA 496

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA-CKHHRNTE 424
              DL S +G      N            +W A+++A  +H R  E
Sbjct: 497 TCGDLESSTGIFSRINN--------KSVISWNAIIAANVRHGRGEE 534



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 163/379 (43%), Gaps = 35/379 (9%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HA   + GL     +   L+  YG   LV  A  L  EMPQR+ VSW +I+ A +    
Sbjct: 66  IHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGC 125

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            ++ +  +  M   + +  +    A++V  CG+L     G QV A  V+S       V +
Sbjct: 126 MEEALVAYRRMRK-EGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVAN 184

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFL 204
           SL+ M+       N R                         R +DA  +F++   R+   
Sbjct: 185 SLITMFG------NLR-------------------------RVQDAERLFDRMEERDRIS 213

Query: 205 WTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLV 264
           W A++S           F    +MR   V   D   L S+V  CA+  ++ LG  IH L 
Sbjct: 214 WNAMISMYSHEEVYSKCFIVLSDMRHGEVK-PDVTTLCSLVSVCASSDLVALGSGIHSLC 272

Query: 265 IALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETL 324
           ++ G    + + NA+V+MY+    +  A+ +F  M R+DV+SW ++I    Q     E L
Sbjct: 273 VSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEAL 332

Query: 325 ALYDEMVSAGV-KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
               +++      PN +TF   + ACS    +  GR +  +MI    +   L     LL 
Sbjct: 333 ETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTI-HAMILQRSLQNVLLIGNSLLT 391

Query: 384 LLSRSGHLDEAENLIKAMP 402
           + S+   +++ E + ++MP
Sbjct: 392 MYSKCNSMEDTERVFESMP 410



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 166/395 (42%), Gaps = 38/395 (9%)

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLG---A 120
           MP R   SW + ++   +  L     ++   M   D +    F  ASLV AC   G    
Sbjct: 1   MPHRTSSSWYTAVSGCARCGLESTAFTLLRVMRERD-VPLSGFALASLVTACEHRGWQEG 59

Query: 121 TRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSA 180
              G  +HA    +    +  + ++L+ +Y   GL  NA+ +F  +  +N VSWTA++ A
Sbjct: 60  AACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVA 119

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLV 240
            + +G     ME                           +A  ++  MR+EGV + +   
Sbjct: 120 LSSNG----CME---------------------------EALVAYRRMRKEGV-MCNANA 147

Query: 241 LSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR 300
           L+++V  C        G Q+   V+  G  + + ++N+++ M+     +  A+ +F RM 
Sbjct: 148 LATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQDAERLFDRME 207

Query: 301 RKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK 360
            +D +SW ++I   +      +   +  +M    VKP+  T   L+  C+   LV  G  
Sbjct: 208 ERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCASSDLVALGSG 267

Query: 361 LFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHH 420
           +  S+    G+  S+     L+++ S +G LDEAE+L + M    D  +W  ++S+    
Sbjct: 268 I-HSLCVSSGLHCSVPLINALVNMYSTAGKLDEAESLFRNMS-RRDVISWNTMISSYVQS 325

Query: 421 RNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
            +          LL      P+S    S + A ++
Sbjct: 326 NSCVEALETLGQLLQTDEGPPNSMTFSSALGACSS 360


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 199/589 (33%), Positives = 328/589 (55%), Gaps = 34/589 (5%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           VK +   ++  G      + N ++  + KC L+  A  L +EMP++D  SW +++  +  
Sbjct: 136 VKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVD 195

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
           +    +   +F  M   +        F ++++A   LG  ++G+Q+H+C +     DD  
Sbjct: 196 SGNFSEAFGLFLCMWE-EFNDGRSRTFTTMIRASAGLGLVQVGRQIHSCALKRGVGDDTF 254

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V  +L+DMY+KCG          SI+                     DA  +F+Q P + 
Sbjct: 255 VSCALIDMYSKCG----------SIE---------------------DAHCVFDQMPEKT 283

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
              W ++++         +A   + EMR  G  I D   +S ++  CA  A LE  KQ H
Sbjct: 284 TVGWNSIIASYALHGYSEEALSFYYEMRDSGAKI-DHFTISIVIRICARLASLEYAKQAH 342

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             ++  GY++ +  + A+VD Y+K   +  A  +F RMRRK+V+SW ++I G   HGQ E
Sbjct: 343 AALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGE 402

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E + ++++M+  G+ PN VTF+ ++ ACS+ GL  +G ++F SM  D+ + P   HY C+
Sbjct: 403 EAVEMFEQMLREGMIPNHVTFLAVLSACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACM 462

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDP 441
           ++LL R G LDEA  LI++ PF+P    WA LL+AC+ H N E+G   A +L  ++PE  
Sbjct: 463 VELLGREGLLDEAYELIRSAPFKPTTNMWATLLTACRMHENLELGKLAAENLYGMEPEKL 522

Query: 442 SSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKD 501
            +YI+L N+Y S+   +  + V + +    ++  P  ++IE  K S+ F  G+ SH    
Sbjct: 523 CNYIVLLNLYNSSGKLKEAAGVLQTLKRKGLRMLPACTWIEVKKQSYAFLCGDKSHSQTK 582

Query: 502 EIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVL 561
           EI+E +  +  E+ R GYV +  ++L D+++ E++R L +HSE+LA+A+GL+ +   T L
Sbjct: 583 EIYEKVNNMMVEISRHGYVEENKALLPDVDE-EEQRILKYHSEKLAIAFGLINTPHWTPL 641

Query: 562 RVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++ +  RVCGDCH  +K I+ +T REIVVRDA+R+HHF+DG CSC D+W
Sbjct: 642 QITQGHRVCGDCHSAIKFIAMVTGREIVVRDASRFHHFRDGSCSCGDYW 690



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 159/353 (45%), Gaps = 35/353 (9%)

Query: 83  NLPQKTISIFSTM-LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
           N  ++ + +F  + L  D        + +LV AC  L + R  K+V    V S F  D  
Sbjct: 94  NRYREAMELFEILELEHDGFDVGGSTYDALVSACVGLRSIRGVKRVFNYMVNSGFEPDLY 153

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V + ++ ++ KCGL  +AR +FD +  K+  SW  M+  +  SG   +A  +F       
Sbjct: 154 VMNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSGNFSEAFGLF------- 206

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           L +W     G  +SR                         ++++ A A   ++++G+QIH
Sbjct: 207 LCMWEEFNDG--RSR-----------------------TFTTMIRASAGLGLVQVGRQIH 241

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
              +  G     F+S A++DMY+KC  I  A  +F +M  K  V W SII   A HG +E
Sbjct: 242 SCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSE 301

Query: 322 ETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCL 381
           E L+ Y EM  +G K +  T   +I  C+ +  +   ++   +++   G    +   T L
Sbjct: 302 EALSFYYEMRDSGAKIDHFTISIVIRICARLASLEYAKQAHAALVRR-GYDTDIVANTAL 360

Query: 382 LDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           +D  S+ G +++A ++   M    +  +W AL++   +H   E    +   +L
Sbjct: 361 VDFYSKWGRMEDAWHVFNRMR-RKNVISWNALIAGYGNHGQGEEAVEMFEQML 412



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 13/178 (7%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +R+CAR       K  HA +++ G          L+D Y K   ++ A H+   M +++ 
Sbjct: 326 IRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNV 385

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW +++  Y      ++ + +F  ML  + + P+H  F +++ AC   G +  G +   
Sbjct: 386 ISWNALIAGYGNHGQGEEAVEMFEQMLR-EGMIPNHVTFLAVLSACSYSGLSERGWE--- 441

Query: 130 CFVLSPFCDDDVVK------SSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSA 180
             +      D  VK      + +V++  + GL + A  +  S   K + + W  +L+A
Sbjct: 442 --IFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPTTNMWATLLTA 497


>gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Brachypodium distachyon]
          Length = 615

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/600 (35%), Positives = 327/600 (54%), Gaps = 48/600 (8%)

Query: 25  LHAQIIKLGLHQYGPLPNTLI-----DAYGKCDLVQYAHHLLEEMPQRDHVSWASIL--- 76
           LHA  +K GL  +      L+         K   + YA  + + +P    V W + L   
Sbjct: 50  LHAAAVKSGLQAHPAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGPGDVVWYNTLLRG 109

Query: 77  ----TAYNQANLP-QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACF 131
               +A   A  P ++   +F  ML  + + PD + F SL+KAC +  A   G+Q H   
Sbjct: 110 YARCSAAGGARPPAEEAARVFVRMLE-EGVAPDTYTFVSLLKACAAARAGEEGRQAHGVA 168

Query: 132 VLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM 191
           V     + + V  +L++MYA+CG    AR +F  +  +  VS+ AM++A  RS R  +A+
Sbjct: 169 VKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEAL 228

Query: 192 EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANF 251
            +F                                EM+ +G+ +   + L S++ ACA  
Sbjct: 229 VLFR-------------------------------EMQAKGLKLTS-VTLISVLSACALL 256

Query: 252 AVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
             LELG+ IH  V  +  +S + ++ A++DMY KC  +  A  +F  M  +D  +W+ +I
Sbjct: 257 GALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMI 316

Query: 312 VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
           V  A H    E ++L++EM   G+KP++VTF+G++YACSH GLV +G + F SM E +G+
Sbjct: 317 VAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLVSEGLQYFDSMRE-FGL 375

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
            P ++HY C+ DLL+RSG LD A   I  +P +P    W  LLSAC    + ++G +V  
Sbjct: 376 VPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAILWRTLLSACGSRGDADLGKQVFE 435

Query: 432 HLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFY 491
            +L L       Y++ SN+ A+   W+ +++VRKLM+   V K PG S IE     H F+
Sbjct: 436 RILELDDSHGGDYVIFSNLCANTGRWEEMNRVRKLMNEKGVVKVPGCSSIEVDNRVHEFF 495

Query: 492 AGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLH-DMEQKEKERQLFWHSERLAVAY 550
           AG+  HP   +   ++  +  ++K  GYVP+TS V H +M ++EK   L +HSE+LA+++
Sbjct: 496 AGDGRHPKSLDARRMVDGVIEQLKLAGYVPNTSHVFHVEMGEEEKAVSLRYHSEKLAISF 555

Query: 551 GLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           GLL + PGT LRVVKNLRVC DCH + K++S +  R I++RD  R+HHF+DG CSC D+W
Sbjct: 556 GLLNTSPGTTLRVVKNLRVCPDCHSMAKLVSMVFNRRIILRDLNRFHHFEDGVCSCGDYW 615



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 171/408 (41%), Gaps = 88/408 (21%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L+ CA  +     +  H   +K+G  ++  +  TLI+ Y +C   + A  +   + 
Sbjct: 145 FVSLLKACAAARAGEEGRQAHGVAVKVGAAEHEYVLPTLINMYAECGDARAARTMFGRVD 204

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
               VS+ +++TA  +++ P + + +F  M A   L+       S++ AC  LGA  LG+
Sbjct: 205 GECVVSYNAMITAAVRSSRPGEALVLFREMQA-KGLKLTSVTLISVLSACALLGALELGR 263

Query: 126 QVHACFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARS 184
            +H  +V     D  V V ++L+DMY KCG   +A +VF  ++ ++  +W+ M+ AYA  
Sbjct: 264 WIHE-YVRKVQLDSLVKVNTALIDMYGKCGSLEDAISVFQGMESRDRQAWSVMIVAYANH 322

Query: 185 GRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSI 244
              ++A+ +FE                               EM+++G+   D +    +
Sbjct: 323 SYGREAISLFE-------------------------------EMKKQGIK-PDDVTFLGV 350

Query: 245 VGACANFAVLELGKQI------HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGR 298
           + AC++  ++  G Q        GLV  + +  C+             +D++        
Sbjct: 351 LYACSHSGLVSEGLQYFDSMREFGLVPGIKHYGCV-------------ADLL-------- 389

Query: 299 MRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKG 358
                           A+ GQ +      DE+    +KP  + +  L+ AC   G    G
Sbjct: 390 ----------------ARSGQLDRAYEFIDELP---IKPTAILWRTLLSACGSRGDADLG 430

Query: 359 RKLFKSMIE-------DYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           +++F+ ++E       DY I  +L   T   + ++R   L   + ++K
Sbjct: 431 KQVFERILELDDSHGGDYVIFSNLCANTGRWEEMNRVRKLMNEKGVVK 478


>gi|224141427|ref|XP_002324074.1| predicted protein [Populus trichocarpa]
 gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/620 (34%), Positives = 337/620 (54%), Gaps = 24/620 (3%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGP---LPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           LR CAR+    T K LHA I+  GL    P   L N L   Y  C +   A HL  ++P+
Sbjct: 22  LRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARHLFYQIPR 81

Query: 67  --RDHVSWASILTAYNQ-ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
             +D   W ++LT+  Q    P +    F  M   + +  D     S+   C  +    +
Sbjct: 82  SHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRK-EGVVLDDVAMISVFVLCTRVEDLGM 140

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
           G+Q   C V         V +++++MY KCGL    R VF  +  +N VSW+ +L    +
Sbjct: 141 GRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVVK 200

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR---REGVDIVDPLV 240
               ++   +F++ P RN   WT +++G V +    + F    EM    R G++ V    
Sbjct: 201 WEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFV---T 257

Query: 241 LSSIVGACANFAVLELGKQIHGLVI-ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRM 299
           LSSI+ ACA    + +G+ +H   +  +G E  + +  A+VDMYAKC  I  A  +F  +
Sbjct: 258 LSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYL 317

Query: 300 RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGR 359
            +++VV+W +++ G A HG+ +  L ++ +M+    KP+++TF+ ++ ACSH GLV +G 
Sbjct: 318 PKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEE-AKPDDLTFMAVLSACSHSGLVDQGY 376

Query: 360 KLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKH 419
             F+S+  +YG TP ++HY C++D+L R+GHL+EA  LIK MP  P+E    +LL +C  
Sbjct: 377 HYFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSCNA 436

Query: 420 HRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYS 479
           H   ++G R+   L+ +   +   ++LLSN+Y         + +R+++    ++K PG S
Sbjct: 437 HGKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGIRKVPGVS 496

Query: 480 YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVL---------HDM 530
            I  G   H F AG+ SHPL  EI+  L  +   ++  GYVP+T++ +            
Sbjct: 497 SIYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLAGYVPNTTNQVFPGSDGREGSSE 556

Query: 531 EQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVV 590
           E +EKE+ LF HSE+LAV +G + + PG  L + KNLR+C DCH  +K++S+I  REIV+
Sbjct: 557 EMEEKEQALFLHSEKLAVCFGHISTKPGAPLYIFKNLRICQDCHSAIKIVSKIYNREIVI 616

Query: 591 RDATRYHHFKDGKCSCNDFW 610
           RD  R+H FK G CSC+D+W
Sbjct: 617 RDRNRFHCFKHGSCSCSDYW 636



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 168/399 (42%), Gaps = 70/399 (17%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCD---DDVVKSSLVDMYAKCGLPNNARAVFD 164
           F SL+++C    +   GK++HA  + S       +  + ++L  +YA CG+ ++AR +F 
Sbjct: 18  FRSLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARHLFY 77

Query: 165 SIKL--KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
            I    K+   WT +L++  + G K                                + F
Sbjct: 78  QIPRSHKDVTDWTTLLTSLVQHGTKPS------------------------------EGF 107

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
           + F EMR+EGV ++D + + S+   C     L +G+Q  G ++ +G    + + NAI++M
Sbjct: 108 FFFKEMRKEGV-VLDDVAMISVFVLCTRVEDLGMGRQAQGCLVKMGLGLGVKVCNAIMNM 166

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSI-------------------------------I 311
           Y KC  +   + +F  M  ++VVSW+++                               I
Sbjct: 167 YVKCGLVEEVRRVFCEMNERNVVSWSTLLEGVVKWEGVENGRVVFDEMPERNEVGWTIMI 226

Query: 312 VGTAQHGQAEETLALYDEMV-SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370
            G   +G + E   L DEMV    +  N VT   ++ AC+  G V  GR +    ++  G
Sbjct: 227 AGYVGNGFSREGFLLLDEMVLRFRLGLNFVTLSSILSACAQSGDVLMGRWVHVYALKGMG 286

Query: 371 ITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVA 430
               +   T L+D+ ++ G +D A  + K +P + +   W A+L     H   +    + 
Sbjct: 287 REMHIMVGTALVDMYAKCGPIDMAFKVFKYLP-KRNVVAWNAMLGGLAMHGRGKFVLDIF 345

Query: 431 NHLL-SLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
             ++   KP+D +   +LS    S  + Q     R L S
Sbjct: 346 PKMIEEAKPDDLTFMAVLSACSHSGLVDQGYHYFRSLES 384



 Score = 72.0 bits (175), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/202 (24%), Positives = 97/202 (48%), Gaps = 8/202 (3%)

Query: 238 PLVLSSIVGACANFAVLELGKQIHGLVIALGYESC---LFISNAIVDMYAKCSDIIAAKD 294
           P    S++ +CA  + L  GK++H +++  G  S     F+ NA+  +YA C    +A+ 
Sbjct: 15  PARFRSLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARH 74

Query: 295 IFGRMRR--KDVVSWTSIIVGTAQHG-QAEETLALYDEMVSAGVKPNEVTFVGLIYACSH 351
           +F ++ R  KDV  WT+++    QHG +  E    + EM   GV  ++V  + +   C+ 
Sbjct: 75  LFYQIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTR 134

Query: 352 VGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWA 411
           V  +G GR+    +++  G+   ++    ++++  + G ++E   +   M  E +  +W+
Sbjct: 135 VEDLGMGRQAQGCLVK-MGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMN-ERNVVSWS 192

Query: 412 ALLSACKHHRNTEMGTRVANHL 433
            LL         E G  V + +
Sbjct: 193 TLLEGVVKWEGVENGRVVFDEM 214


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/575 (35%), Positives = 313/575 (54%), Gaps = 33/575 (5%)

Query: 36  QYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTM 95
           Q+  L N  I AY KC  +  A  +   +  +   SW +++  + Q   P+K + +   M
Sbjct: 383 QHVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQM 442

Query: 96  LALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGL 155
                 QPD F  +SL+ AC  L + + GK++H   + +    D  V +SL+  Y  C  
Sbjct: 443 -TYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHC-- 499

Query: 156 PNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQS 215
                                        G+   A  +F++   +NL  W A++SG  Q+
Sbjct: 500 -----------------------------GKASSARVLFDRMKDKNLVSWNAMISGYSQN 530

Query: 216 RNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFI 275
               ++   F +   EG+     + + S+ GAC+  + L LGK+ HG V+        F+
Sbjct: 531 GLPYESLALFRKSLSEGIQ-SHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTEDAFV 589

Query: 276 SNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGV 335
             +I+DMYAK   I  ++ +F  ++ K+V SW +IIV    HG  +E + LY+ M   G 
Sbjct: 590 GCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQ 649

Query: 336 KPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAE 395
            P+  T++G++ AC H GLV +G K FK M     I P L+HY CL+D+L+R+G LD+A 
Sbjct: 650 MPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDAL 709

Query: 396 NLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAA 455
            L+  MP E D   W++LL +C+     E+G +VA  LL L+P+   +Y+LLSN+YA   
Sbjct: 710 RLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLG 769

Query: 456 MWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMK 515
            W  V +VR++M  + ++K+ G S+IE G   + F  G++  P   EI  +   L+  + 
Sbjct: 770 KWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQPKSAEIRVIWRRLEERIS 829

Query: 516 RRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHI 575
             GY P+TSSVLH++ ++EK   L  HSE+LA+++GLLK+  GT LR+ KNLR+C DCH 
Sbjct: 830 EIGYKPNTSSVLHEVGEEEKIDILRGHSEKLAISFGLLKTTKGTTLRIYKNLRICADCHN 889

Query: 576 VMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
             K+IS+  +REIVVRD  R+HHF+DG CSC D+W
Sbjct: 890 AAKLISKAVEREIVVRDNKRFHHFRDGLCSCCDYW 924



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 112/465 (24%), Positives = 205/465 (44%), Gaps = 76/465 (16%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNT-LIDAYGKCDLVQYAHHLLEEMPQRD 68
           L+ C   +   T + LH  +     ++   + NT LI  Y  C     +  + + M  ++
Sbjct: 50  LQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKN 109

Query: 69  HVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVH 128
            + W ++++ Y +  L    + +F  +++    QPD+F F S++KACG +   RLG+ +H
Sbjct: 110 LIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLGEVIH 169

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
              +      D  V ++LV MY KCG  + A  VFD +   N VSW +M+ A++ +G  +
Sbjct: 170 GMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSR 229

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           D+ ++                                +EM  E   + D + + +I+  C
Sbjct: 230 DSFDL-------------------------------LMEMLGEEGLLPDVVTVVTILPVC 258

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
           A    +++G  IHGL + LG    + ++NA+V MY+KC  +  A+  F +   K+VVSW 
Sbjct: 259 AGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWN 318

Query: 309 SIIVGTAQHGQAEETLALYDEMVSAG--VKPNEVTFVGLIYAC----------------- 349
           ++I   +  G   E   L  EM   G  +K NEVT + ++ AC                 
Sbjct: 319 TMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSF 378

Query: 350 ----SHV-------------GLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
                HV             G +    K+F  + +      ++  +  L+   +++G   
Sbjct: 379 RHCFQHVELSNAFILAYAKCGALNSAEKVFHGIGD-----KTVSSWNALIGGHAQNGDPR 433

Query: 393 EAENLIKAMPFEPDEPTW---AALLSACKHHRNTEMGTRVANHLL 434
           +A +L+  M +   +P W   ++LL AC H ++ + G  +  ++L
Sbjct: 434 KALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVL 478



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 183/394 (46%), Gaps = 33/394 (8%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  +IK+GL     + N L+  YGKC  V  A  + + MP+ + VSW S++ A+++ 
Sbjct: 166 EVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSEN 225

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              + +  +   ML  + L PD     +++  C   G   +G  +H   V     ++ +V
Sbjct: 226 GFSRDSFDLLMEMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMV 285

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            +++V MY+KCG  N A+  F     KN VSW  M+SA++  G   +A  + ++  ++  
Sbjct: 286 NNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGE 345

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                                   EM+   V I++      ++ AC +   L   K++HG
Sbjct: 346 ------------------------EMKANEVTILN------VLPACLDKLQLRSLKELHG 375

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
                 ++  + +SNA +  YAKC  + +A+ +F  +  K V SW ++I G AQ+G   +
Sbjct: 376 YSFRHCFQH-VELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRK 434

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            L L  +M  +G +P+  T   L+ AC+H+  +  G+++   ++ + G+       T LL
Sbjct: 435 ALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRN-GLETDFFVGTSLL 493

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
                 G    A  L   M  + +  +W A++S 
Sbjct: 494 SHYIHCGKASSARVLFDRMK-DKNLVSWNAMISG 526



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 194/412 (47%), Gaps = 44/412 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L VCA          +H   +KLGL +   + N ++  Y KC  +  A     +   ++ 
Sbjct: 255 LPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNV 314

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW ++++A++      +  ++   M    ++Q                G      +V  
Sbjct: 315 VSWNTMISAFSLEGDVNEAFNLLQEM----QIQ----------------GEEMKANEVTI 354

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             VL P C D +   SL +++       + R  F  ++L N     A + AYA+ G    
Sbjct: 355 LNVL-PACLDKLQLRSLKELHGY-----SFRHCFQHVELSN-----AFILAYAKCGALNS 403

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A ++F     + +  W AL+ G  Q+ +   A +   +M   G    D   +SS++ ACA
Sbjct: 404 AEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQ-PDWFTISSLLLACA 462

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           +   L+ GK+IHG V+  G E+  F+  +++  Y  C    +A+ +F RM+ K++VSW +
Sbjct: 463 HLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNA 522

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK----LFKSM 365
           +I G +Q+G   E+LAL+ + +S G++ +E+  V +  ACS +  +  G++    + K++
Sbjct: 523 MISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKAL 582

Query: 366 -IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
             ED  +  S      ++D+ ++SG + E+  +   +  + +  +W A++ A
Sbjct: 583 QTEDAFVGCS------IIDMYAKSGCIKESRKVFDGLK-DKNVASWNAIIVA 627



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/312 (25%), Positives = 145/312 (46%), Gaps = 43/312 (13%)

Query: 111 LVKACGSLGATRLGKQVHACFVLSP-FCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLK 169
           L++ACG+      G+++H     S  + +D V+ + L+ MYA CG P ++R V       
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLV------- 101

Query: 170 NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMR 229
                                   F+    +NL  W ALVSG  ++    D    F+++ 
Sbjct: 102 ------------------------FDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLV 137

Query: 230 REGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDI 289
            +     D     S++ AC     + LG+ IHG+VI +G    +F+ NA+V MY KC  +
Sbjct: 138 SDTDFQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAV 197

Query: 290 IAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS-AGVKPNEVTFVGLIYA 348
             A  +F  M   ++VSW S+I   +++G + ++  L  EM+   G+ P+ VT V ++  
Sbjct: 198 DEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPV 257

Query: 349 CSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEP 408
           C+  G V  G  +    ++  G++  +     ++ + S+ G+L+EA+     M F  +  
Sbjct: 258 CAGEGEVDIGMGIHGLAVK-LGLSEEVMVNNAMVYMYSKCGYLNEAQ-----MSFVKNNN 311

Query: 409 ----TWAALLSA 416
               +W  ++SA
Sbjct: 312 KNVVSWNTMISA 323



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/384 (25%), Positives = 173/384 (45%), Gaps = 60/384 (15%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA  +     K +H  +++ GL     +  +L+  Y  C     A  L + M  ++ 
Sbjct: 458 LLACAHLKSLQYGKEIHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNL 517

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW ++++ Y+Q  LP +++++F   L+ + +Q       S+  AC  L A RLGK+ H 
Sbjct: 518 VSWNAMISGYSQNGLPYESLALFRKSLS-EGIQSHEIAIVSVFGACSQLSALRLGKEAHG 576

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +   +D  V  S++DMYAK G    +R VFD +K KN  SW A++ A+   G  K+
Sbjct: 577 YVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKE 636

Query: 190 AMEIFE------QAPVRNLFLWTALV---SGLVQS--------------RNEIDAFYSFI 226
           A+E++E      Q P R  ++   +    +GLV+                 +++ +   I
Sbjct: 637 AIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLI 696

Query: 227 EMRREGVDIVDPLVL-------------SSIVGACANFAVLELGKQIHGLVIAL---GYE 270
           +M      + D L L             SS++ +C  F  LE+G+++   ++ L     E
Sbjct: 697 DMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAE 756

Query: 271 SCLFISNAIVDMYAKCSDIIAAKDIFGRMR----RKDV-VSWT-------SIIVGTAQHG 318
           + + +SN    +YA        + +   M+    +KD   SW        S +VG +   
Sbjct: 757 NYVLLSN----LYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWIEVGGRVYSFVVGDSLQP 812

Query: 319 QAEETLALY---DEMVSA-GVKPN 338
           ++ E   ++   +E +S  G KPN
Sbjct: 813 KSAEIRVIWRRLEERISEIGYKPN 836


>gi|302765332|ref|XP_002966087.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
 gi|300166901|gb|EFJ33507.1| hypothetical protein SELMODRAFT_84768 [Selaginella moellendorffii]
          Length = 449

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 186/445 (41%), Positives = 275/445 (61%), Gaps = 1/445 (0%)

Query: 166 IKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSF 225
           +K  N++   A+L+ Y R G  ++A ++F+     + F WT +++   ++   ++A   F
Sbjct: 6   LKSSNAILENALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELF 65

Query: 226 IEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAK 285
             M  EG+     + L+S++ ACA    L++GKQIH  + A G+ S +    A++DMYAK
Sbjct: 66  HRMNLEGIPPTS-VTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAK 124

Query: 286 CSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGL 345
           C  +  +  +F  M  ++ VSWT++I   AQHGQ +E L L+ EM   G+  +  TF+ +
Sbjct: 125 CGSLECSSKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKEMNLEGMVADATTFICV 184

Query: 346 IYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP 405
           + ACSH GL+ +  + F SM+EDY I P+  HY   LD + R+G L +AE LI +MPF P
Sbjct: 185 LRACSHAGLIKESLEFFHSMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHP 244

Query: 406 DEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRK 465
           +  TW  LL+AC+ H   E  T+VA  L  L PED  +Y LL NVYA+   +    +VRK
Sbjct: 245 ETVTWKTLLNACRIHSQAERATKVAELLAKLAPEDSMAYTLLGNVYAATERYGDQMRVRK 304

Query: 466 LMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSS 525
            M+   +KK PG S+IE     H F AG+ +HP +DEI   L +L   M+  GYVP+T  
Sbjct: 305 SMTDRGLKKVPGKSFIEVKNKVHEFVAGDRAHPSRDEILLELEKLGGRMREAGYVPNTKD 364

Query: 526 VLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITK 585
           VLH + ++EKE+ +  HSE+LA+A+GL+ + PGT L +VKNLRVC DCH   K+I++I +
Sbjct: 365 VLHAVNEEEKEQLIGLHSEKLAIAFGLIATPPGTPLLIVKNLRVCSDCHAATKVIAKIMR 424

Query: 586 REIVVRDATRYHHFKDGKCSCNDFW 610
           R IVVRD  R+HHF+DG+CSC D+W
Sbjct: 425 RRIVVRDTHRFHHFEDGQCSCKDYW 449



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 93/157 (59%), Gaps = 1/157 (0%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L N L++ Y +C  ++ A  + + M   D  SW +++TA  +     + + +F  M  L+
Sbjct: 13  LENALLNMYVRCGSLEEARKVFDAMDHPDAFSWTNMITACTENCELLEALELFHRM-NLE 71

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            + P     AS++ AC   GA ++GKQ+H+    S F    + +++L+DMYAKCG    +
Sbjct: 72  GIPPTSVTLASVLNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECS 131

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
             VF +++ +NSVSWTAM++A A+ G+  +A+E+F++
Sbjct: 132 SKVFTAMETRNSVSWTAMIAALAQHGQGDEALELFKE 168



 Score = 47.4 bits (111), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/204 (19%), Positives = 82/204 (40%), Gaps = 6/204 (2%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        K +H+++   G H        L+D Y KC  ++ +  +   M  R+ 
Sbjct: 84  LNACACSGALKVGKQIHSRLDASGFHSSVLAQTALLDMYAKCGSLECSSKVFTAMETRNS 143

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ-VH 128
           VSW +++ A  Q     + + +F  M  L+ +  D   F  +++AC   G  +   +  H
Sbjct: 144 VSWTAMIAALAQHGQGDEALELFKEM-NLEGMVADATTFICVLRACSHAGLIKESLEFFH 202

Query: 129 ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKL-KNSVSWTAMLSA---YARS 184
           +          +      +D   + G   +A  +  S+     +V+W  +L+A   ++++
Sbjct: 203 SMVEDYAIAPTETHYCRALDTIGRAGRLQDAEELIHSMPFHPETVTWKTLLNACRIHSQA 262

Query: 185 GRKKDAMEIFEQAPVRNLFLWTAL 208
            R     E+  +    +   +T L
Sbjct: 263 ERATKVAELLAKLAPEDSMAYTLL 286


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/588 (34%), Positives = 316/588 (53%), Gaps = 34/588 (5%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HA  +KLG      +  +  D Y K  L   A  L +EMP R+   W + ++     
Sbjct: 78  KQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISNAVLD 137

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
             P K I  F     +   +PD   F + + AC       LG+Q+H   + S F  D  V
Sbjct: 138 GRPGKAIDKFIEFRRVGG-EPDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSV 196

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            + ++D+Y KC     A  VF+ +  +NSVSW  M                         
Sbjct: 197 ANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTM------------------------- 231

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                 V+   Q+  +  A   F+  R+EG+++ D +V SS++ A A  + LE G+ +H 
Sbjct: 232 ------VAACEQNDEKEKACVVFLMGRKEGIELTDYMV-SSVISAYAGISGLEFGRSVHA 284

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
           L +    E  +F+ +A+VDMY KC  I   + +F  M  +++VSW ++I G A  G  + 
Sbjct: 285 LAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDM 344

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLL 382
            + L++EM S  V  N VT + ++ ACS  G V  G ++F+SM + Y I P  +HY C+ 
Sbjct: 345 AMTLFEEMQSEAV-ANYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIA 403

Query: 383 DLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
           D+L R+G ++ A   ++ MP  P    W ALL+AC+ +   E+G   A++L  L P+D  
Sbjct: 404 DMLGRAGMVERAYEFVQKMPIRPTISVWGALLNACRVYGEPELGKIAADNLFKLDPKDSG 463

Query: 443 SYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDE 502
           +++LLSN++A+A  W   + VRK M  + +KK  G S++      H+F A +TSH    E
Sbjct: 464 NHVLLSNMFAAAGRWDEATLVRKEMKDVGIKKGAGCSWVTAKNKVHVFQAKDTSHERNSE 523

Query: 503 IFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLR 562
           I  +L +L  EM+  GY+PDT+  L+D+E++EK  ++ +HSE++A+A+GL+   PG  +R
Sbjct: 524 IQAMLVKLRTEMQAAGYMPDTNYALYDLEEEEKMTEVGYHSEKIALAFGLIALPPGVPIR 583

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           + KNLR+CGDCH   K IS I  REI+VRD  R+H F+D +CSC DFW
Sbjct: 584 ITKNLRICGDCHSAFKFISGIVGREIIVRDNNRFHRFRDSQCSCRDFW 631



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/432 (25%), Positives = 196/432 (45%), Gaps = 40/432 (9%)

Query: 48  YGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV 107
           Y K DL   A  LL+  P R  V+W ++++   Q       +  FS M   + ++P+ F 
Sbjct: 2   YSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRR-ENIKPNDFT 60

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           F    KA  +L     GKQ+HA  +     +D  V  S  DMY+K GL   A+ +FD + 
Sbjct: 61  FPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMP 120

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            +N   W A +S     GR   A++                                FIE
Sbjct: 121 PRNVAVWNAYISNAVLDGRPGKAID-------------------------------KFIE 149

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
            RR G +  D +   + + ACA+   L+LG+Q+HGLVI  G+E  + ++N I+D+Y KC 
Sbjct: 150 FRRVGGE-PDLITFCAFLNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCK 208

Query: 288 DIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
           ++  A+ +F  M R++ VSW +++    Q+ + E+   ++      G++  +     +I 
Sbjct: 209 EVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLMGRKEGIELTDYMVSSVIS 268

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
           A + +  +  GR +    ++   +   +   + L+D+  + G +++ E +   MP E + 
Sbjct: 269 AYAGISGLEFGRSVHALAVKAC-VEGDIFVGSALVDMYGKCGSIEDCEQVFHEMP-ERNL 326

Query: 408 PTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLM 467
            +W A++S   H  + +M   +   + S   E  ++Y+ L  V ++ +    V    ++ 
Sbjct: 327 VSWNAMISGYAHQGDVDMAMTLFEEMQS---EAVANYVTLICVLSACSRGGAVKLGNEIF 383

Query: 468 SVM--EVKKEPG 477
             M    + EPG
Sbjct: 384 ESMRDRYRIEPG 395



 Score =  106 bits (264), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 104/218 (47%), Gaps = 9/218 (4%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA  +     + LH  +I+ G      + N +ID YGKC  V+ A  +   M +R+ 
Sbjct: 166 LNACADARCLDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNS 225

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++ A  Q +  +K   +F  M   + ++   ++ +S++ A   +     G+ VHA
Sbjct: 226 VSWCTMVAACEQNDEKEKACVVF-LMGRKEGIELTDYMVSSVISAYAGISGLEFGRSVHA 284

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             V +    D  V S+LVDMY KCG   +   VF  +  +N VSW AM+S YA  G    
Sbjct: 285 LAVKACVEGDIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDM 344

Query: 190 AMEIFEQAPVRNLFLWTALV--------SGLVQSRNEI 219
           AM +FE+     +  +  L+         G V+  NEI
Sbjct: 345 AMTLFEEMQSEAVANYVTLICVLSACSRGGAVKLGNEI 382



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 150/356 (42%), Gaps = 36/356 (10%)

Query: 181 YARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGV---DIVD 237
           Y++      A  + +  P R +  WTAL+SG VQ+     A   F +MRRE +   D   
Sbjct: 2   YSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTF 61

Query: 238 PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297
           P    +    C  FA    GKQIH + + LG  +  F+  +  DMY+K      A+ +F 
Sbjct: 62  PCAFKASTALCLPFA----GKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFD 117

Query: 298 RMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357
            M  ++V  W + I      G+  + +  + E    G +P+ +TF   + AC+    +  
Sbjct: 118 EMPPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDL 177

Query: 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417
           GR+L   +I   G    +     ++D+  +   ++ AE +   M    +  +W  +++AC
Sbjct: 178 GRQLHGLVIRS-GFEGDVSVANGIIDVYGKCKEVELAEMVFNGMG-RRNSVSWCTMVAAC 235

Query: 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPG 477
           + +   E    V   L+  K     +  ++S+V ++ A                     G
Sbjct: 236 EQNDEKEKACVV--FLMGRKEGIELTDYMVSSVISAYA---------------------G 272

Query: 478 YSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQK 533
            S +EFG+  H   A      ++ +IF + + L     + G + D   V H+M ++
Sbjct: 273 ISGLEFGRSVH---ALAVKACVEGDIF-VGSALVDMYGKCGSIEDCEQVFHEMPER 324


>gi|317106766|dbj|BAJ53258.1| JMS10C05.1 [Jatropha curcas]
          Length = 563

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/567 (38%), Positives = 316/567 (55%), Gaps = 38/567 (6%)

Query: 45  IDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQK-TISIFSTMLALDKLQP 103
           +  +G  D   YA  +  ++P     ++ S++       +P K  I +F  M+      P
Sbjct: 34  LSPFGNFD---YARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVGKGYPNP 90

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           + F  A ++KAC  + A   GKQ+HA  + S F     V+SSLV+ Y+KC     AR VF
Sbjct: 91  NTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVF 150

Query: 164 DSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFY 223
           D I  +N V W+AM+S YAR G   +A+ +F                             
Sbjct: 151 DEITERNLVCWSAMVSGYARLGMINEALIMFR---------------------------- 182

Query: 224 SFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMY 283
              EM+  G++  D + L  ++ ACA    L++GK +H  +        L ++ A+++MY
Sbjct: 183 ---EMQVVGIE-PDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLELNTALINMY 238

Query: 284 AKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFV 343
           AKC  I  A++IF  MR KD  +W+S+IVG A HG AE+ L ++  M  A  KPN VTF+
Sbjct: 239 AKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVFSRMEEAQAKPNHVTFI 298

Query: 344 GLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPF 403
           G++ AC+H GLV  G++ + SM+E  GI PS++HY C++DLL R G +DEA +    +P 
Sbjct: 299 GILSACAHGGLVSDGKRYWSSMLE-LGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIP- 356

Query: 404 EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKV 463
            PD   W  LL A   +R  +    VA  LL L+P    +YI+L+N+YAS +  + VS V
Sbjct: 357 TPDPVIWRTLLVAYTKNRMLQKAEMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHV 416

Query: 464 RKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDT 523
           RK+M    +K  PG + IE     H F  G+ SHP  +EI + L ++  ++   GY P  
Sbjct: 417 RKMMKENGIKALPGCTSIEVDGFVHNFVTGDWSHPEAEEIKKTLRDVALKILISGYKPFV 476

Query: 524 SSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRI 583
           S VLH +  +EKE  L+ HSERLA+AYGL+K+     +R+VKNLRVCGDCH V K+IS+I
Sbjct: 477 SVVLHLVNDEEKENVLYEHSERLAIAYGLMKTKAPATIRIVKNLRVCGDCHEVTKIISKI 536

Query: 584 TKREIVVRDATRYHHFKDGKCSCNDFW 610
             REI+VRD  R+H F +G CSC D+W
Sbjct: 537 YDREIIVRDRVRFHKFVNGTCSCKDYW 563



 Score =  115 bits (287), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 132/244 (54%), Gaps = 3/244 (1%)

Query: 178 LSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR-NEIDAFYSFIEMRREGVDIV 236
            +A +  G    A +IF Q P   +F + +++ G + ++    +  + F +M  +G    
Sbjct: 31  FAALSPFGNFDYARKIFSQIPNPGIFAYNSVIRGCLYTKIPSKEPIHLFKDMVGKGYPNP 90

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           +   ++ ++ AC+    LE GKQIH  ++  G+ S  ++ +++V+ Y+KC +I  A+ +F
Sbjct: 91  NTFTMAFVLKACSIIMALEEGKQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVF 150

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
             +  +++V W++++ G A+ G   E L ++ EM   G++P+EV+ VG++ AC+ VG + 
Sbjct: 151 DEITERNLVCWSAMVSGYARLGMINEALIMFREMQVVGIEPDEVSLVGVLSACAMVGALD 210

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            G K   + I+   I   L+  T L+++ ++ G +++A  +   M  + D   W++++  
Sbjct: 211 IG-KWVHAYIKKRMIHVDLELNTALINMYAKCGCIEKAREIFDEMRVK-DSKAWSSMIVG 268

Query: 417 CKHH 420
              H
Sbjct: 269 LAIH 272



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 158/348 (45%), Gaps = 45/348 (12%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           K +HAQI++ G      + ++L++ Y KC+ +  A  + +E+ +R+ V W+++++ Y + 
Sbjct: 112 KQIHAQILRSGFSSSPYVQSSLVNFYSKCEEITIARKVFDEITERNLVCWSAMVSGYARL 171

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            +  + + +F  M  +  ++PD      ++ AC  +GA  +GK VHA         D  +
Sbjct: 172 GMINEALIMFREMQVVG-IEPDEVSLVGVLSACAMVGALDIGKWVHAYIKKRMIHVDLEL 230

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L++MYAKCG    AR +FD +++K+S +W++M+   A  G  +DA+ +F        
Sbjct: 231 NTALINMYAKCGCIEKAREIFDEMRVKDSKAWSSMIVGLAIHGLAEDALNVF-------- 282

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                       SR E            E     + +    I+ ACA+  ++  GK+   
Sbjct: 283 ------------SRME------------EAQAKPNHVTFIGILSACAHGGLVSDGKRYWS 318

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
            ++ LG E  +     +VD+  +   I  A D    +   D V W +++V   ++   ++
Sbjct: 319 SMLELGIEPSMEHYGCMVDLLCRGGLIDEAYDFALIIPTPDPVIWRTLLVAYTKNRMLQK 378

Query: 323 TLALYDEMVSAGV-------KPNEVTFVGLIYACSHVGLVGKGRKLFK 363
                 EMV+  +         N +    L  + S +  V   RK+ K
Sbjct: 379 A-----EMVAGKLLELEPWKAENYIILANLYASVSQLEKVSHVRKMMK 421


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 204/605 (33%), Positives = 334/605 (55%), Gaps = 35/605 (5%)

Query: 7   LHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQ 66
           L+ +    R    L  K +HA  I+ GL     + NTLID Y KC  V++  +  E M +
Sbjct: 353 LNLIAASGRSGNLLNGKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHE 412

Query: 67  RDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQ 126
           +D +SW +I+  Y Q     + I++F   + +  +  D  +  S+++AC  L +    ++
Sbjct: 413 KDLISWTTIIAGYAQNECHLEAINLFRK-VQVKGMDVDPMMIGSVLRACSGLKSRNFIRE 471

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGR 186
           +H  +V      D ++++++V++Y + G  + AR  F+SI                   R
Sbjct: 472 IHG-YVFKRDLADIMLQNAIVNVYGEVGHRDYARRAFESI-------------------R 511

Query: 187 KKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVG 246
            KD +             WT++++  V +   ++A   F  +++  +   D + + S + 
Sbjct: 512 SKDIVS------------WTSMITCCVHNGLPVEALELFYSLKQTNIQ-PDSIAIISALS 558

Query: 247 ACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS 306
           A AN + L+ GK+IHG +I  G+     I++++VDMYA C  +  ++ +F  ++++D++ 
Sbjct: 559 ATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFHSVKQRDLIL 618

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           WTS+I     HG   E +AL+ +M    V P+ +TF+ L+YACSH GL+ +G++ F+ M 
Sbjct: 619 WTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACSHSGLMVEGKRFFEIMK 678

Query: 367 EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMG 426
             Y + P  +HY C++DLLSRS  L+EA   +++MP +P    W ALL AC  H N E+G
Sbjct: 679 YGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPSSEVWCALLGACHIHSNKELG 738

Query: 427 TRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKG 486
              A  LL    ++   Y L+SN++A+   W  V +VR  M    +KK PG S+IE    
Sbjct: 739 ELAAKELLQSDTKNSGKYALISNIFAADGRWNDVEEVRLRMKGNGLKKNPGCSWIEVDNK 798

Query: 487 SHIFYAGETSHPLKDEIFELLTELDAEM-KRRGYVPDTSSVLHDMEQKEKERQLFWHSER 545
            H F A + SHP  D+I+  L +    + K+ GY+  T  V H++ ++EK + L+ HSER
Sbjct: 799 IHTFMARDKSHPQTDDIYLKLAQFTKLLGKKGGYIAQTKFVFHNVSEEEKTQMLYRHSER 858

Query: 546 LAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCS 605
           LA+ YGLL +  GT +R+ KNLR+C DCH   K+ S +++R +VVRDA R+HHF+ G CS
Sbjct: 859 LALGYGLLVTPKGTSIRITKNLRICDDCHTFFKIASEVSQRALVVRDANRFHHFERGLCS 918

Query: 606 CNDFW 610
           C DFW
Sbjct: 919 CGDFW 923



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 198/396 (50%), Gaps = 39/396 (9%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHA+++K  L  +  L   L+  Y KC  ++ A  + +EM +R   +W +++ A+  +
Sbjct: 66  QQLHARLLKSHLSAF--LATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSS 123

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + I ++  M  L  +  D   F S++KACG+LG +RLG ++H   V   F +   V
Sbjct: 124 GKYLEAIELYKEMRVLG-VAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFV 182

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKL--KNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            ++L+ MY KCG    AR +FD I +  +++VSW +++SA+   G+  +A+ +F +    
Sbjct: 183 CNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRR---- 238

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
                       +Q        Y+F+    +GV+  DP             + ++LG  I
Sbjct: 239 ------------MQEVGVASNTYTFVAA-LQGVE--DP-------------SFVKLGMGI 270

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HG  +   + + ++++NA++ MYAKC  +  A+ +F  M  +D VSW +++ G  Q+   
Sbjct: 271 HGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLSGLVQNELY 330

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
            + L  + +M ++  KP++V+ + LI A    G +  G+++    I + G+  ++Q    
Sbjct: 331 RDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRN-GLDSNMQIGNT 389

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           L+D+ ++   +       + M  E D  +W  +++ 
Sbjct: 390 LIDMYAKCCCVKHMGYAFECM-HEKDLISWTTIIAG 424



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/435 (24%), Positives = 193/435 (44%), Gaps = 78/435 (17%)

Query: 29  IIKLGLHQYGP-----------LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILT 77
            +KLG+  +G            + N LI  Y KC  ++ A  +   M  RD+VSW ++L+
Sbjct: 263 FVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCRDYVSWNTLLS 322

Query: 78  AYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFC 137
              Q  L +  ++ F  M    + +PD     +L+ A G  G    GK+VHA  + +   
Sbjct: 323 GLVQNELYRDALNYFRDMQNSAQ-KPDQVSVLNLIAASGRSGNLLNGKEVHAYAIRNGLD 381

Query: 138 DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            +  + ++L+DMYAKC    +    F+ +  K+ +SWT +++ YA++    +A+ +F + 
Sbjct: 382 SNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLEAINLFRKV 441

Query: 198 PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
            V+                               G+D VDP+++ S++ AC+        
Sbjct: 442 QVK-------------------------------GMD-VDPMMIGSVLRACSGLKSRNFI 469

Query: 258 KQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQH 317
           ++IHG V        + + NAIV++Y +      A+  F  +R KD+VSWTS+I     +
Sbjct: 470 REIHGYVFKRDLAD-IMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHN 528

Query: 318 GQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLF--------------- 362
           G   E L L+  +    ++P+ +  +  + A +++  + KG+++                
Sbjct: 529 GLPVEALELFYSLKQTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIA 588

Query: 363 KSMIEDYGITPSLQH---------------YTCLLDLLSRSGHLDEAENLIKAMPFE--- 404
            S+++ Y    ++++               +T +++     G  +EA  L K M  E   
Sbjct: 589 SSLVDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVI 648

Query: 405 PDEPTWAALLSACKH 419
           PD  T+ ALL AC H
Sbjct: 649 PDHITFLALLYACSH 663



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 111/439 (25%), Positives = 191/439 (43%), Gaps = 49/439 (11%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE--MPQRDHVSWASILTAYNQA 82
           +H   +K G  ++  + N LI  YGKC  +  A  L +   M + D VSW SI++A+   
Sbjct: 167 IHGVAVKCGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTE 226

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
               + +S+F  M  +  +  + + F + ++        +LG  +H   + S    D  V
Sbjct: 227 GKCLEALSLFRRMQEVG-VASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYV 285

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++L+ MYAKC                               GR +DA  +F     R+ 
Sbjct: 286 ANALIAMYAKC-------------------------------GRMEDAERVFASMLCRDY 314

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
             W  L+SGLVQ+    DA   F +M+       D + + +++ A      L  GK++H 
Sbjct: 315 VSWNTLLSGLVQNELYRDALNYFRDMQNSAQK-PDQVSVLNLIAASGRSGNLLNGKEVHA 373

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             I  G +S + I N ++DMYAKC  +      F  M  KD++SWT+II G AQ+    E
Sbjct: 374 YAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNECHLE 433

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHY---T 379
            + L+ ++   G+  + +    ++ ACS  GL  K R   +  I  Y     L       
Sbjct: 434 AINLFRKVQVKGMDVDPMMIGSVLRACS--GL--KSRNFIRE-IHGYVFKRDLADIMLQN 488

Query: 380 CLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPE 439
            ++++    GH D A    +++    D  +W ++++ C H+    +         SLK  
Sbjct: 489 AIVNVYGEVGHRDYARRAFESIR-SKDIVSWTSMITCCVHN---GLPVEALELFYSLKQT 544

Query: 440 D--PSSYILLSNVYASAAM 456
           +  P S  ++S + A+A +
Sbjct: 545 NIQPDSIAIISALSATANL 563



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 78/176 (44%), Gaps = 4/176 (2%)

Query: 242 SSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRR 301
           S ++  C     L  G+Q+H  ++     +  F++  ++ MY KC  +  A  +F  M  
Sbjct: 50  SLLLDLCVAVKALPQGQQLHARLLKSHLSA--FLATKLLHMYEKCGSLKDAVKVFDEMTE 107

Query: 302 KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKL 361
           + + +W +++      G+  E + LY EM   GV  +  TF  ++ AC  +G    G ++
Sbjct: 108 RTIFTWNAMMGAFVSSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGAEI 167

Query: 362 FKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEP-DEPTWAALLSA 416
               ++  G    +     L+ +  + G L  A  L   +  E  D  +W +++SA
Sbjct: 168 HGVAVK-CGFGEFVFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISA 222


>gi|147854977|emb|CAN80267.1| hypothetical protein VITISV_027683 [Vitis vinifera]
          Length = 539

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/528 (38%), Positives = 302/528 (57%), Gaps = 4/528 (0%)

Query: 86  QKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSS 145
             ++ IF +M+ +    P+ + F  + KACG+      G+Q+    +      +  V ++
Sbjct: 13  HNSMRIFLSMVRVSGFLPNRYTFVFVFKACGNGLGVLEGEQIRVHAIKIGLESNLFVTNA 72

Query: 146 LVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLW 205
           ++ MYA  GL + AR VFD    ++  SW  M+  Y  SG    A E+F++   R++  W
Sbjct: 73  MIRMYANWGLVDEARRVFDWSLDQDLYSWNIMIGGYVGSGEIGRAKEMFDEMSERDVVSW 132

Query: 206 TALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVI 265
           T +++G VQ     +A   F EM + G    +   L+S + ACAN   L+ G+ IH  + 
Sbjct: 133 TTIIAGYVQVGCFKEALDLFHEMLQTGPP-PNEFTLASALAACANLVALDQGRWIHVYID 191

Query: 266 ALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR--RKDVVSWTSIIVGTAQHGQAEET 323
               +    +  +++DMYAKC +I  A  +F      +  V  W ++I G A HG+++E 
Sbjct: 192 KSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKLKVWPWNAMIGGYAMHGKSKEA 251

Query: 324 LALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLD 383
           + L+++M    V PN+VTFV L+ ACSH  LV +GR  FKSM   YGI P ++HY C++D
Sbjct: 252 IDLFEQMKVEKVSPNKVTFVALLNACSHGKLVEEGRGYFKSMASSYGIEPEIEHYGCMVD 311

Query: 384 LLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSS 443
           LL RSG L EAE  +  MP  PD   W ALL AC+ H++ E G R+   +  L  +    
Sbjct: 312 LLGRSGLLKEAEETVFNMPMAPDATIWGALLGACRIHKDIERGQRIGKIIKELDSDHIGC 371

Query: 444 YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEI 503
           ++LL+N+Y+++  W     VR+ + V   KK PG S IE     H F  G+ SHP   ++
Sbjct: 372 HVLLANLYSASGQWDEAKAVRQKIEVSGRKKTPGCSSIELNGVFHQFLVGDRSHPQTKQL 431

Query: 504 FELLTELDAEMKRRGYVPDTSSVLHDMEQKE-KERQLFWHSERLAVAYGLLKSVPGTVLR 562
           +  L E+  ++K  GYVP+   VL D++ +E KE  L  HSE+LA+A+GL+ + PGT +R
Sbjct: 432 YLFLDEMTTKLKNAGYVPEFGEVLLDIDDEEDKETALSKHSEKLAIAFGLINTPPGTAIR 491

Query: 563 VVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +VKNLRVC DCH   K IS++ KREI+VRD  RYHHFKDG CSC D+W
Sbjct: 492 IVKNLRVCADCHEATKFISKVYKREIIVRDRIRYHHFKDGFCSCKDYW 539



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 3/163 (1%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           N +I  Y     +  A  + +EM +RD VSW +I+  Y Q    ++ + +F  ML     
Sbjct: 102 NIMIGGYVGSGEIGRAKEMFDEMSERDVVSWTTIIAGYVQVGCFKEALDLFHEMLQTGP- 160

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARA 161
            P+ F  AS + AC +L A   G+ +H     S    ++ + +SL+DMYAKCG  + A  
Sbjct: 161 PPNEFTLASALAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAK 220

Query: 162 VF-DSIKLKNSV-SWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
           VF D   LK  V  W AM+  YA  G+ K+A+++FEQ  V  +
Sbjct: 221 VFHDEYGLKLKVWPWNAMIGGYAMHGKSKEAIDLFEQMKVEKV 263



 Score = 42.0 bits (97), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 39/175 (22%), Positives = 72/175 (41%), Gaps = 5/175 (2%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLL-EEMPQRD 68
           L  CA        + +H  I K  +     L  +L+D Y KC  + +A  +  +E   + 
Sbjct: 171 LAACANLVALDQGRWIHVYIDKSEIKMNERLLASLLDMYAKCGEIDFAAKVFHDEYGLKL 230

Query: 69  HV-SWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQV 127
            V  W +++  Y      ++ I +F  M  ++K+ P+   F +L+ AC        G+  
Sbjct: 231 KVWPWNAMIGGYAMHGKSKEAIDLFEQM-KVEKVSPNKVTFVALLNACSHGKLVEEGRGY 289

Query: 128 HACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNA-RAVFDSIKLKNSVSWTAMLSA 180
                 S   + ++     +VD+  + GL   A   VF+     ++  W A+L A
Sbjct: 290 FKSMASSYGIEPEIEHYGCMVDLLGRSGLLKEAEETVFNMPMAPDATIWGALLGA 344


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 211/590 (35%), Positives = 325/590 (55%), Gaps = 62/590 (10%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           +HAQI    L     +   LI +      + YA  +       +   + +++    + + 
Sbjct: 59  IHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENSR 118

Query: 85  PQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKS 144
            + ++S F  ML L  ++PD      ++K+  +L    LG+ +H   +      D  V+ 
Sbjct: 119 FEGSVSHFVLMLRLS-IRPDRLTLPFVLKSVAALVDVGLGRCLHGGVMKLGLEFDSFVRV 177

Query: 145 SLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN--- 201
           SLVDMY K G                                    +++F+++P RN   
Sbjct: 178 SLVDMYVKIG-------------------------------ELGFGLQLFDESPQRNKAE 206

Query: 202 -LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
            + LW                          GV   D  V+S+++ AC     L++G++I
Sbjct: 207 SILLWN-------------------------GVRPNDLTVVSALL-ACTKIGALQVGERI 240

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           H  + + G++    I  A+VDMYAKC +I +A  +F   + KD+++W+ +I G A HG  
Sbjct: 241 HNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCF 300

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           ++ L  + +M SAG+ P+EV F+ ++ ACSH G V +G   F+SM  DY I P+++HYT 
Sbjct: 301 DQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTL 360

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DLL R+G LDEA + I++MP  PD   W AL  AC+ H+N EM    A  LL L+P+ 
Sbjct: 361 IVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNIEMAELTAEKLLQLEPKH 420

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
           P SY+ LSNVYA+   W+ V +VR LM    V+K+PG+SYIE     H F AG+ +H   
Sbjct: 421 PGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVEKDPGWSYIEVEGQVHSFVAGDHAHVRA 480

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
           +EI   L E+ A  K+ GY+P+T+ VLH++E++EKE  L  HSE+LA+A+GL+ + PG+ 
Sbjct: 481 EEISLKLEEITASAKQEGYMPETAWVLHNIEEEEKEDALGSHSEKLALAFGLISTAPGST 540

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +R+VKNLRVCGDCH +MK  S++++REI++RD  R+HHFKDG CSC D+W
Sbjct: 541 IRIVKNLRVCGDCHSMMKYASKLSRREIILRDIKRFHHFKDGTCSCGDYW 590



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 135/329 (41%), Gaps = 57/329 (17%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LH  ++KLGL     +  +L+D Y K   + +   L +E PQR            N+A
Sbjct: 158 RCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQR------------NKA 205

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
                      ++L  + ++P+     S + AC  +GA ++G+++H     + F  +  +
Sbjct: 206 E----------SILLWNGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGI 255

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            ++LVDMYAKCG   +A  VF   K K+ ++W+ M+  +A  G        F+Q      
Sbjct: 256 GTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAIHG-------CFDQ------ 302

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQ-IH 261
                             A   F++M+  G++  D ++  +I+ AC++   ++ G     
Sbjct: 303 ------------------ALQCFVKMKSAGIN-PDEVIFLAILTACSHSGNVDQGLNFFE 343

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMR-RKDVVSWTSIIVGTAQHGQA 320
            + +    E  +     IVD+  +   +  A      M    D V W ++      H   
Sbjct: 344 SMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALFCACRAHKNI 403

Query: 321 EETLALYDEMVSAGVK-PNEVTFVGLIYA 348
           E      ++++    K P    F+  +YA
Sbjct: 404 EMAELTAEKLLQLEPKHPGSYVFLSNVYA 432


>gi|5080805|gb|AAD39314.1|AC007258_3 Hypothetical protein [Arabidopsis thaliana]
          Length = 615

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 218/612 (35%), Positives = 327/612 (53%), Gaps = 60/612 (9%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-------DLVQYAHHLLEEMPQRDHVSWAS 74
           +K LHA  ++     Y   P TL   YGK          V YA  + + +       W +
Sbjct: 41  LKQLHAFTLRT---TYPEEPATLF-LYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNT 96

Query: 75  ILTA-YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           ++ A  +  +  ++   ++  ML   +  PD   F  ++KAC  +     GKQVH   V 
Sbjct: 97  LIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVK 156

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
             F  D  V + L+ +Y  CG  + AR VFD +                           
Sbjct: 157 HGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEM--------------------------- 189

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
               P R+L  W +++  LV+      A   F EM+R      D   + S++ ACA    
Sbjct: 190 ----PERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEP--DGYTMQSVLSACAGLGS 243

Query: 254 LELGKQIHGLVIA---LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
           L LG   H  ++    +     + + N++++MY KC  +  A+ +F  M+++D+ SW ++
Sbjct: 244 LSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM 303

Query: 311 IVGTAQHGQAEETLALYDEMVSA--GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           I+G A HG+AEE +  +D MV     V+PN VTFVGL+ AC+H G V KGR+ F  M+ D
Sbjct: 304 ILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRD 363

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC-KHHRNTEMGT 427
           Y I P+L+HY C++DL++R+G++ EA +++ +MP +PD   W +LL AC K   + E+  
Sbjct: 364 YCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSE 423

Query: 428 RVANHLLSLKPEDPSS-------YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
            +A +++  K ++ SS       Y+LLS VYASA+ W  V  VRKLMS   ++KEPG S 
Sbjct: 424 EIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSS 483

Query: 481 IEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSS--VLHDMEQKEKERQ 538
           IE    SH F+AG+TSHP   +I++ L  +D  ++  GY+PD S   ++       KE  
Sbjct: 484 IEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYS 543

Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
           L  HSERLA+A+GL+   P T +R+ KNLRVC DCH V K+IS++   EI+VRD  R+HH
Sbjct: 544 LRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHH 603

Query: 599 FKDGKCSCNDFW 610
           FKDG CSC D+W
Sbjct: 604 FKDGSCSCLDYW 615


>gi|297737088|emb|CBI26289.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score =  387 bits (995), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/631 (34%), Positives = 343/631 (54%), Gaps = 45/631 (7%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKC------DLVQYAHHLLEEMPQRDHVSWA-- 73
           +K LH QI K GL Q       L++A  +       D  + A  L +E  + D   +   
Sbjct: 41  LKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLN 100

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           S++  Y+ A L ++ I ++  ML L  + P+H+ F  ++  C  + A   G QVH   V 
Sbjct: 101 SLIRGYSSAGLGREAILLYVRMLVLG-VTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVK 159

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAM-- 191
               +D  +++ L+  YA+CG  ++   VF+ +  +N VSWT+++  YAR  R K+A+  
Sbjct: 160 MGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSL 219

Query: 192 ---------------------------EIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYS 224
                                       +F++   RNL L+  ++S   +     +A   
Sbjct: 220 FFEMLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAI 279

Query: 225 FIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL-----GYESCLFISNAI 279
             EM ++G    D + + S + A A    L  GK  HG  +       G    + ++ A+
Sbjct: 280 LDEMLQQGPR-PDRVTMLSAISASAQLVDLFYGKVCHGYWVHTYIEKNGIPCDMRLNTAL 338

Query: 280 VDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           VDM+A+C D  +A  +F +M  +DV +WT+ I   A  G  E    L+++M+  GVKP+ 
Sbjct: 339 VDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDV 398

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIK 399
           V FV ++ ACSH G V +G  +F S++ED+GI+P ++HY C++DLL R+G L EA +LIK
Sbjct: 399 VLFVQVLTACSHGGQVEQGLHIF-SLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIK 457

Query: 400 AMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQH 459
           +MP EP++  W +LL+AC+ H+N EM T  A  +  L P+    ++LLSN+YASA  W  
Sbjct: 458 SMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVLLSNIYASAGKWTD 517

Query: 460 VSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGY 519
           V++VR  +    V+K PG S ++     H F +G+ SHP    I  +L E++      G+
Sbjct: 518 VARVRLNLREKGVRKVPGSSSVQVNGVIHEFTSGDESHPEMTHIALMLQEMNCRFSDAGH 577

Query: 520 VPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKM 579
           +PD S+VL D++++EKE  L  HSE+LA+A+GL+ +     +RVVKNLR+C DCH   KM
Sbjct: 578 IPDLSNVLLDVDEQEKEYLLSRHSEKLAIAFGLIATGRSMPIRVVKNLRMCSDCHSFAKM 637

Query: 580 ISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            S I  REI+VRD  R+H F+ G CSC D+W
Sbjct: 638 ASIIYNREIIVRDNNRFHFFRQGLCSCCDYW 668


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 192/601 (31%), Positives = 318/601 (52%), Gaps = 34/601 (5%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA   +    + +H   +K G      L N L+D Y  C   +  + +   M Q++ 
Sbjct: 304 LPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNV 363

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW +++T+Y +A L  K   +F  M  L+  +PD F   S + A       + GK VH 
Sbjct: 364 VSWTAMITSYTRAGLYDKVAGLFQEM-GLEGTRPDIFAITSALHAFAGNELLKHGKSVHG 422

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +       V ++L++MY KCG    A+ +FD +  K+ +SW  ++  Y+R+    +
Sbjct: 423 YAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANE 482

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A  +F +               L+Q R                    + + ++ I+ A A
Sbjct: 483 AFSLFTEM--------------LLQLRP-------------------NAVTMTCILPAAA 509

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           + + LE G+++H   +  GY    F++NA++DMY KC  ++ A+ +F R+  K+++SWT 
Sbjct: 510 SLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTI 569

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           ++ G   HG+  + +AL+++M  +G+ P+  +F  ++YACSH GL  +G + F +M +++
Sbjct: 570 MVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEH 629

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
            I P L+HYTC++DLL  +G+L EA   I +MP EPD   W +LL  C+ HRN ++   V
Sbjct: 630 KIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEV 689

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  +  L+PE+   Y+LL+N+YA A  W+ V K++  +    +++  G S+IE     H+
Sbjct: 690 AERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWIEAKGKVHV 749

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F A   +HP    I E L E+   M+  G+ P     L   +       L  HS +LAVA
Sbjct: 750 FIADNRNHPQGTRIAEFLNEVAKRMQEEGHDPKKKYALMGADNAVHGEALCGHSSKLAVA 809

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +G+L    G ++RV KN RVC  CH   K IS++  REI++RD+ R+HHF+ G+CSC  +
Sbjct: 810 FGVLNLSEGRLIRVTKNSRVCSHCHEAAKFISKMCSREIILRDSNRFHHFEQGRCSCRGY 869

Query: 610 W 610
           W
Sbjct: 870 W 870



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 138/553 (24%), Positives = 249/553 (45%), Gaps = 81/553 (14%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +H  + KLG      + N L+  Y K +  + A  + + MP RD +SW S+++     
Sbjct: 216 EVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSN 275

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            L  K I +F  M  L+  + D     S++ AC  L    LG+ VH   V + F     +
Sbjct: 276 GLYDKAIELFVRMW-LEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSL 334

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            + L+DMY+ C    +   +F ++  KN VSWTAM+++Y R+G       ++++      
Sbjct: 335 ANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAG-------LYDK------ 381

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                 V+GL Q            EM  EG    D   ++S + A A   +L+ GK +HG
Sbjct: 382 ------VAGLFQ------------EMGLEGTR-PDIFAITSALHAFAGNELLKHGKSVHG 422

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEE 322
             I  G E  L ++NA+++MY KC ++  AK IF  +  KD++SW ++I G +++  A E
Sbjct: 423 YAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANE 482

Query: 323 TLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRK-----LFKSMIEDYGITPSL-- 375
             +L+ EM+   ++PN VT   ++ A + +  + +GR+     L +  +ED  +  +L  
Sbjct: 483 AFSLFTEMLLQ-LRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALID 541

Query: 376 QHYTCLLDLLSRS-----------------------GHLDEAENLIKAM---PFEPDEPT 409
            +  C   LL+R                        G   +A  L + M      PD  +
Sbjct: 542 MYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAAS 601

Query: 410 WAALLSACKHHRNTEMGTRVANHLLSLKPEDP--SSYILLSNVYASAAMWQHVSKVRKLM 467
           ++A+L AC H    + G R  + +      +P    Y  + ++  +     ++ +  + +
Sbjct: 602 FSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTG---NLKEAYEFI 658

Query: 468 SVMEVKKEPGYS-YIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSV 526
             M +  EP  S ++   +G  I    + +  + + +FEL      E +  GY    +++
Sbjct: 659 DSMPI--EPDSSIWVSLLRGCRIHRNVKLAEEVAERVFEL------EPENTGYYVLLANI 710

Query: 527 LHDMEQKEKERQL 539
             + E+ E  R+L
Sbjct: 711 YAEAERWEAVRKL 723



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 185/401 (46%), Gaps = 37/401 (9%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVS-WASILTAYNQANLPQKTISIFSTMLAL 98
           L   L+  Y KC  ++ A  + +EMPQ   V  W ++++ Y +A   ++ + +F  M   
Sbjct: 131 LGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCC 190

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
             ++PD +  + ++K    LG+   G+ VH       F     V ++L+  YAK     +
Sbjct: 191 G-VRPDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKD 249

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
           A  VFD +  ++ +SW +M+S    +G    A+E+                         
Sbjct: 250 AILVFDGMPHRDVISWNSMISGCTSNGLYDKAIEL------------------------- 284

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
                 F+ M  EG ++ D   L S++ ACA   +L LG+ +HG  +  G+ S   ++N 
Sbjct: 285 ------FVRMWLEGEEL-DSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANV 337

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++DMY+ CSD  +   IF  M +K+VVSWT++I    + G  ++   L+ EM   G +P+
Sbjct: 338 LLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPD 397

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
                  ++A +   L+  G+ +    I + G+   L     L+++  + G+++EA+ LI
Sbjct: 398 IFAITSALHAFAGNELLKHGKSVHGYAIRN-GMEKVLAVTNALMEMYVKCGNMEEAK-LI 455

Query: 399 KAMPFEPDEPTWAALLSA-CKHHRNTEMGTRVANHLLSLKP 438
                  D  +W  L+    +++   E  +     LL L+P
Sbjct: 456 FDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQLRP 496



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/351 (23%), Positives = 146/351 (41%), Gaps = 74/351 (21%)

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDD---DVVKSSLVDMYAKCGLPNNAR 160
           D   + ++++ C  + +   GK+ H     S    D   +V+   LV MY KCG   NAR
Sbjct: 90  DDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENAR 149

Query: 161 AVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEID 220
            VFD                              E   V ++ +WTAL+SG  ++ +  +
Sbjct: 150 RVFD------------------------------EMPQVSDVRVWTALMSGYAKAGDLRE 179

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
               F +M   GV   D   +S ++   A    +E G+ +HGL+  LG+ S   + NA++
Sbjct: 180 GVLLFRKMHCCGVR-PDAYTISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALM 238

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
             YAK +    A  +F  M  +DV+SW S+I G   +G  ++ + L+  M   G + +  
Sbjct: 239 AFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSA 298

Query: 341 TFVGLIYACSHVGLVGKGR-----------------------------------KLFKSM 365
           T + ++ AC+ + L+  GR                                   K+F++M
Sbjct: 299 TLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNM 358

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
           ++   ++     +T ++   +R+G  D+   L + M  E   P   A+ SA
Sbjct: 359 VQKNVVS-----WTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSA 404



 Score = 68.9 bits (167), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 108/233 (46%), Gaps = 15/233 (6%)

Query: 232 GVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA--LGYESC-LFISNAIVDMYAKCSD 288
           G D VD     +++  C+    LE GK+ H LV A  LG +     +   +V MY KC D
Sbjct: 85  GSDGVDDRSYGAVLQLCSEVRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGD 144

Query: 289 IIAAKDIFGRMRR-KDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIY 347
           +  A+ +F  M +  DV  WT+++ G A+ G   E + L+ +M   GV+P+  T   ++ 
Sbjct: 145 LENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLK 204

Query: 348 ACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDE 407
             + +G +  G ++   ++E  G          L+   ++S    +A  +   MP   D 
Sbjct: 205 CIAGLGSIEDG-EVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHR-DV 262

Query: 408 PTWAALLSACK----HHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAM 456
            +W +++S C     + +  E+  R     + L+ E+  S  LLS + A A +
Sbjct: 263 ISWNSMISGCTSNGLYDKAIELFVR-----MWLEGEELDSATLLSVLPACAEL 310


>gi|225432810|ref|XP_002283562.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g43790-like [Vitis vinifera]
          Length = 590

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/597 (36%), Positives = 333/597 (55%), Gaps = 37/597 (6%)

Query: 21  TVKTLHAQIIKLGL--HQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
           T+K +HA +I  GL  H Y PL   L+       +  +A  +   +P      + +++++
Sbjct: 24  TLKQVHAHMITTGLIFHTY-PLSRILL--ISSTIVFTHALSIFNHIPNPTIFLYNTLISS 80

Query: 79  YNQANLPQKT---ISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV--L 133
              AN+   T    S++S +L    L+P+ F F SL KACGS    R G+ +H   +  L
Sbjct: 81  L--ANIKPHTHIAFSLYSRVLTHTTLKPNGFTFPSLFKACGSQPWLRHGRALHTHVLKFL 138

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
            P CD   V+++L++ YAKCG     R +F+ I   +  SW ++LSAY       ++  I
Sbjct: 139 EPTCDP-FVQAALLNYYAKCGKVGACRYLFNQISKPDLASWNSILSAYVH-----NSGAI 192

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
            E   +                   ++    FIEM++  +   + + L +++ ACA    
Sbjct: 193 CEDVSL------------------SLEVLTLFIEMQKSLIK-ANEVTLVALISACAELGA 233

Query: 254 LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
           L  G   H  V+    +   F+  A++DMY+KC  +  A  +F ++  +D + + ++I G
Sbjct: 234 LSQGAWAHVYVLKHNLKLNHFVGTALIDMYSKCGCLDLACQLFDQLPHRDTLCYNAMIGG 293

Query: 314 TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
            A HG   + L L+ +M   G+ P++VT V  + +CSHVGLV +G  +F+SM E YG+ P
Sbjct: 294 FAIHGYGHQALDLFKKMTLEGLAPDDVTLVVTMCSCSHVGLVEEGCDVFESMKEVYGVEP 353

Query: 374 SLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHL 433
            L+HY CL+DLL R+G L EAE  +  MP +P+   W +LL A + H N E+G  V  HL
Sbjct: 354 KLEHYGCLVDLLGRAGRLREAEERVLNMPMKPNAVIWRSLLGAARVHGNLEIGEVVLKHL 413

Query: 434 LSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAG 493
           + L+PE   +Y+LLSN+YAS   W  V +VRKLM    + K PG S +E G   H F  G
Sbjct: 414 IQLEPETSGNYVLLSNMYASINRWDDVKRVRKLMKDHGINKVPGSSLVEVGGAMHEFLMG 473

Query: 494 ETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLL 553
           + +HP   EI+  L E+   +   G+ P T  VL D+E++EKE  L +HSERLA+A+ L+
Sbjct: 474 DKTHPRSKEIYLKLEEMSRRLHEYGHKPRTLEVLFDIEEEEKEDALSYHSERLAIAFALI 533

Query: 554 KSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            S     +R++KNLRVCGDCH   K+IS+I +REI+VRD  R+HHFK+G CSC+D+W
Sbjct: 534 ASHHCAPIRIIKNLRVCGDCHTSSKLISKIYEREIIVRDRNRFHHFKEGACSCSDYW 590


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 201/590 (34%), Positives = 337/590 (57%), Gaps = 36/590 (6%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + +HA+++  G      L   L+  Y +C  ++ AH++L+ MP+R+ VSW ++++ Y+Q 
Sbjct: 55  RQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPERNVVSWTAMISGYSQN 114

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKAC-GSLGATRLG-KQVHACFVLSPFCDDD 140
             P +   +F  ML     +P+ F  AS++ +C GS G  +   KQVHA  +   F    
Sbjct: 115 ERPAEAWDLFIMMLRAG-CEPNEFTLASVLTSCTGSQGIHQHQIKQVHAFAIKKNFELHM 173

Query: 141 VVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVR 200
            V SSL+DMYA                               RS   ++A  +F+  P R
Sbjct: 174 FVGSSLLDMYA-------------------------------RSENIQEARRVFDMLPAR 202

Query: 201 NLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQI 260
           ++  +T ++SG  +   + +A   F ++  EG+   + +  S ++ A +  + ++ GKQ+
Sbjct: 203 DVVSYTTILSGYTRLGLDEEALNLFRQLYNEGMQ-CNQVTFSVLLNALSGLSSMDYGKQV 261

Query: 261 HGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQA 320
           HGL++       + + N+++DMY+KC  ++ ++ +F  M  + VVSW ++++G  +HG A
Sbjct: 262 HGLILRRELPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMA 321

Query: 321 EETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
            E + L+  M    VKP+ VT + ++   SH GLV +G  +F  ++++     + QHY C
Sbjct: 322 YEVVQLFRFMCDK-VKPDSVTLLAVLLGYSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGC 380

Query: 381 LLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPED 440
           ++DLL RSG L++A  LI+ MPF+P    W +LL AC+ H N  +G  VA  L  ++PE+
Sbjct: 381 VIDLLGRSGQLEKALLLIQKMPFQPTRAIWGSLLGACRVHANVHVGEFVAQKLFDIEPEN 440

Query: 441 PSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
             +Y++LSN+YA+A MW+ V ++RKLM    V KEPG S++   K  H F++ E  HP K
Sbjct: 441 AGNYVILSNIYAAARMWKDVFRLRKLMLKKTVIKEPGRSWMILDKVIHTFHSSERFHPRK 500

Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTV 560
           ++I   + E+ A +K  G+VPD S VLHD++ ++KER L  HSE+LA+ +GL+ +     
Sbjct: 501 EDINVKINEIYAAIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMSTPSDLT 560

Query: 561 LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           ++V+KNLR+C DCH   K +S++  REI +RD  R+H   +G C+C D+W
Sbjct: 561 IQVMKNLRICVDCHNFAKFVSKVYGREISLRDKNRFHLITEGACTCGDYW 610



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 155/316 (49%), Gaps = 38/316 (12%)

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           + + +  C    A R G+QVHA  V + +     + + LV MYA+CG   +A  V D + 
Sbjct: 38  YDAAITECVGRRALREGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMP 97

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
            +N VSWTAM+S Y+++ R  +A ++                               FI 
Sbjct: 98  ERNVVSWTAMISGYSQNERPAEAWDL-------------------------------FIM 126

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELG--KQIHGLVIALGYESCLFISNAIVDMYAK 285
           M R G +  +   L+S++ +C     +     KQ+H   I   +E  +F+ ++++DMYA+
Sbjct: 127 MLRAGCE-PNEFTLASVLTSCTGSQGIHQHQIKQVHAFAIKKNFELHMFVGSSLLDMYAR 185

Query: 286 CSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGL 345
             +I  A+ +F  +  +DVVS+T+I+ G  + G  EE L L+ ++ + G++ N+VTF  L
Sbjct: 186 SENIQEARRVFDMLPARDVVSYTTILSGYTRLGLDEEALNLFRQLYNEGMQCNQVTFSVL 245

Query: 346 IYACSHVGLVGKGRKLFKSMI-EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFE 404
           + A S +  +  G+++   ++  +     +LQ+   L+D+ S+ G L  +  +   MP E
Sbjct: 246 LNALSGLSSMDYGKQVHGLILRRELPFFMALQN--SLIDMYSKCGKLLYSRRVFDNMP-E 302

Query: 405 PDEPTWAALLSACKHH 420
               +W A+L     H
Sbjct: 303 RSVVSWNAMLMGYGRH 318



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 99/181 (54%), Gaps = 5/181 (2%)

Query: 15  RHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWAS 74
           +HQI    K +HA  IK     +  + ++L+D Y + + +Q A  + + +P RD VS+ +
Sbjct: 154 QHQI----KQVHAFAIKKNFELHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTT 209

Query: 75  ILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLS 134
           IL+ Y +  L ++ +++F  +   + +Q +   F+ L+ A   L +   GKQVH   +  
Sbjct: 210 ILSGYTRLGLDEEALNLFRQLYN-EGMQCNQVTFSVLLNALSGLSSMDYGKQVHGLILRR 268

Query: 135 PFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIF 194
                  +++SL+DMY+KCG    +R VFD++  ++ VSW AML  Y R G   + +++F
Sbjct: 269 ELPFFMALQNSLIDMYSKCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLF 328

Query: 195 E 195
            
Sbjct: 329 R 329


>gi|222622350|gb|EEE56482.1| hypothetical protein OsJ_05706 [Oryza sativa Japonica Group]
          Length = 799

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 196/550 (35%), Positives = 319/550 (58%), Gaps = 3/550 (0%)

Query: 44  LIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQP 103
           LI    K  ++     LL + P RD +SW S++ AY++AN  ++ +  F TML+   + P
Sbjct: 179 LISGLAKMGMLCDTQLLLSQAPVRDVISWTSLIAAYSRANRAREAVGCFKTMLS-HGIAP 237

Query: 104 DHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVF 163
           D     +++ AC  L    LG+ +H           + +  +L+DMYAKCG   +A+ VF
Sbjct: 238 DEVTVIAVLSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVF 297

Query: 164 DSI-KLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAF 222
           D++ +     SW A++  Y + G    A  +F++  VR++  + ++++G + S    +A 
Sbjct: 298 DALGRGPRPQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREAL 357

Query: 223 YSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDM 282
             F+ MRR  +  VD   + +++ ACA+   L+ G+ +H  +     E+ +++  A++DM
Sbjct: 358 LLFMSMRRHDLR-VDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDM 416

Query: 283 YAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTF 342
           Y KC  +  A  +F RM ++DV +WT++I G A +G  +  L  + +M   G +PN V++
Sbjct: 417 YMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQMRCDGFQPNSVSY 476

Query: 343 VGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP 402
           + ++ ACSH  L+ +GR  F  M   Y I P ++HY C++DLL RSG LDEA +L+K MP
Sbjct: 477 IAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMP 536

Query: 403 FEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSK 462
            +P+   WA++LSAC+ H++ ++    A HLL L+P++   Y+ L N+Y  +  W++ SK
Sbjct: 537 IQPNAVIWASILSACRVHKHIDLAQCAAEHLLKLEPDEDGVYVQLYNIYIDSRQWENASK 596

Query: 463 VRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPD 522
           +R LM   +VKK  GYS I      H F   + SHP   EI  +L E+   +K  GY P 
Sbjct: 597 IRMLMEERQVKKTAGYSSITVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSLGYSPL 656

Query: 523 TSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISR 582
           TS +  D++++EKE+ L  HSE+LA+A+GL+   P   + + KNLRVC DCH  +K+ISR
Sbjct: 657 TSQITVDVDEEEKEQALLAHSEKLAIAFGLINLAPNLPVHIRKNLRVCEDCHSAIKLISR 716

Query: 583 ITKREIVVRD 592
           +  REI+VRD
Sbjct: 717 LWNREIIVRD 726



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 113/422 (26%), Positives = 193/422 (45%), Gaps = 57/422 (13%)

Query: 40  LPNTLIDAYGKCDL-VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLAL 98
           L N+L++      L ++YA HL + MP    +   ++       + P +   +F  M   
Sbjct: 38  LLNSLVNCLEPHPLHLRYALHLFDRMPPSTFLFDTALRACSRAGSDPHRPFLLFRRMRRA 97

Query: 99  DKLQPDHFVFASLVKA------------CGSLGATRLGKQVHACFVLSPFCDDDVVKSSL 146
             ++PD F F  L K             C  L A  L   + +    +PF     V +SL
Sbjct: 98  G-VRPDGFTFHFLFKCSSSSSRPHSLLLCTMLHAACLRTMLPSA---APF-----VSNSL 148

Query: 147 VDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWT 206
           + MY + GL  +AR  FD I +K++V+WT ++S  A+ G   D   +  QAPVR++  WT
Sbjct: 149 IHMYIRLGLAADARRAFDEIHVKDAVAWTMLISGLAKMGMLCDTQLLLSQAPVRDVISWT 208

Query: 207 ALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIA 266
           +L++   ++    +A   F  M   G+   D + + +++ ACA    LELG+ +H LV  
Sbjct: 209 SLIAAYSRANRAREAVGCFKTMLSHGI-APDEVTVIAVLSACAKLKDLELGRSLHLLVEE 267

Query: 267 LGYESCLFISNAIVDMYAKCSD--------------------------------IIAAKD 294
            G  +   +  A++DMYAKC D                                +  A+ 
Sbjct: 268 KGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPRPQSWNAIIDGYCKHGHVDVARS 327

Query: 295 IFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGL 354
           +F  M  +D++++ S++ G    GQ  E L L+  M    ++ +  T V L+ AC+ +G 
Sbjct: 328 LFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRRHDLRVDNFTVVNLLTACASLGA 387

Query: 355 VGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALL 414
           + +GR L  + IE   +   +   T LLD+  + G +DEA  + + M  + D  TW A++
Sbjct: 388 LQQGRAL-HACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMG-KRDVHTWTAMI 445

Query: 415 SA 416
           + 
Sbjct: 446 AG 447



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 102/219 (46%), Gaps = 33/219 (15%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-DL--------------- 53
           L  CA+ +     ++LH  + + G+     L   LID Y KC D                
Sbjct: 246 LSACAKLKDLELGRSLHLLVEEKGMPTSENLVVALIDMYAKCGDFGHAQQVFDALGRGPR 305

Query: 54  ----------------VQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLA 97
                           V  A  L +EM  RD +++ S++T Y  +   ++ + +F +M  
Sbjct: 306 PQSWNAIIDGYCKHGHVDVARSLFDEMEVRDIITFNSMMTGYIHSGQLREALLLFMSMRR 365

Query: 98  LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPN 157
            D L+ D+F   +L+ AC SLGA + G+ +HAC        D  + ++L+DMY KCG  +
Sbjct: 366 HD-LRVDNFTVVNLLTACASLGALQQGRALHACIEQRLVEADIYLGTALLDMYMKCGRVD 424

Query: 158 NARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQ 196
            A  VF  +  ++  +WTAM++  A +G  K A+E F Q
Sbjct: 425 EATIVFQRMGKRDVHTWTAMIAGLAFNGMGKAALEHFYQ 463



 Score = 43.1 bits (100), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 77/195 (39%), Gaps = 42/195 (21%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           + LHA I +  +     L   L+D Y KC  V  A  + + M +RD  +W +++      
Sbjct: 392 RALHACIEQRLVEADIYLGTALLDMYMKCGRVDEATIVFQRMGKRDVHTWTAMIAGLAFN 451

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
            + +  +  F  M   D  QP+   + +++ AC            H+C +          
Sbjct: 452 GMGKAALEHFYQMRC-DGFQPNSVSYIAVLTACS-----------HSCLL---------- 489

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSV-----SWTAMLSAYARSGRKKDAMEIFEQA 197
                         N  R  FD +++  ++      +  M+    RSG   +AM++ +  
Sbjct: 490 --------------NEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTM 535

Query: 198 PVR-NLFLWTALVSG 211
           P++ N  +W +++S 
Sbjct: 536 PIQPNAVIWASILSA 550


>gi|8778758|gb|AAF79766.1|AC009317_25 T30E16.32 [Arabidopsis thaliana]
          Length = 695

 Score =  387 bits (994), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/612 (35%), Positives = 327/612 (53%), Gaps = 60/612 (9%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-------DLVQYAHHLLEEMPQRDHVSWAS 74
           +K LHA  ++     Y   P TL   YGK          V YA  + + +       W +
Sbjct: 121 LKQLHAFTLRT---TYPEEPATLF-LYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNT 176

Query: 75  ILTA-YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           ++ A  +  +  ++   ++  ML   +  PD   F  ++KAC  +     GKQVH   V 
Sbjct: 177 LIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVK 236

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
             F  D  V + L+ +Y  CG  + AR VFD                             
Sbjct: 237 HGFGGDVYVNNGLIHLYGSCGCLDLARKVFD----------------------------- 267

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
             + P R+L  W +++  LV+      A   F EM+R      D   + S++ ACA    
Sbjct: 268 --EMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEP--DGYTMQSVLSACAGLGS 323

Query: 254 LELGKQIHGLVIA---LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
           L LG   H  ++    +     + + N++++MY KC  +  A+ +F  M+++D+ SW ++
Sbjct: 324 LSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM 383

Query: 311 IVGTAQHGQAEETLALYDEMVSA--GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           I+G A HG+AEE +  +D MV     V+PN VTFVGL+ AC+H G V KGR+ F  M+ D
Sbjct: 384 ILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRD 443

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC-KHHRNTEMGT 427
           Y I P+L+HY C++DL++R+G++ EA +++ +MP +PD   W +LL AC K   + E+  
Sbjct: 444 YCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSE 503

Query: 428 RVANHLLSLKPEDPSS-------YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
            +A +++  K ++ SS       Y+LLS VYASA+ W  V  VRKLMS   ++KEPG S 
Sbjct: 504 EIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSS 563

Query: 481 IEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSS--VLHDMEQKEKERQ 538
           IE    SH F+AG+TSHP   +I++ L  +D  ++  GY+PD S   ++       KE  
Sbjct: 564 IEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYS 623

Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
           L  HSERLA+A+GL+   P T +R+ KNLRVC DCH V K+IS++   EI+VRD  R+HH
Sbjct: 624 LRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHH 683

Query: 599 FKDGKCSCNDFW 610
           FKDG CSC D+W
Sbjct: 684 FKDGSCSCLDYW 695


>gi|449510831|ref|XP_004163774.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 556

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/601 (35%), Positives = 320/601 (53%), Gaps = 61/601 (10%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  C     ++  + +H+ + K G      + + L+D Y KC  +  A  + EEMP    
Sbjct: 17  LSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAEKVFEEMPTL-- 74

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
                                +   + ALD++      F+S+  AC + G    GKQVH 
Sbjct: 75  ---------------------LLENLTALDEVS-----FSSVFSACANAGNLEFGKQVHG 108

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             +     +   + +SL DMY KCGL N                               D
Sbjct: 109 VALKLGVWNLVYINNSLSDMYGKCGLFN-------------------------------D 137

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
             ++F     R++  W  ++   V + N  DA  SF  MRR+G  I D    SS++ +CA
Sbjct: 138 VAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKG-SIPDEASYSSVLHSCA 196

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
           N A L  G  IH  +I  G+   L ++++++ MYAKC  ++ A  IF     ++VV WT+
Sbjct: 197 NLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTA 256

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           II    QHG A   + L+++M+  G+KP+ +TFV ++ ACSH G V +G   F SMI+ +
Sbjct: 257 IIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVH 316

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRV 429
           GI P  +HY C++DLLSR+G LD A+  I+ MP +PD   W ALLSAC++H N  MG  V
Sbjct: 317 GIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEV 376

Query: 430 ANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHI 489
           A  L  L+P++P +Y+LL N+     M     +VR+ M  + V+KEPG S+I+    +++
Sbjct: 377 ALKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIKNSTYV 436

Query: 490 FYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
           F   + SH    EI+E+L +L   +K++GYV +T   ++  E+  KE+ L++HSE++A+A
Sbjct: 437 FTVHDKSHEKTKEIYEMLEKLKELVKKKGYVAETEFAINTAEEY-KEQSLWYHSEKIALA 495

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GLL    G  +R+ KNLR CGDCH VMK  S I  REI+VRD  R+HHF +G CSC D+
Sbjct: 496 FGLLSLPAGAPIRIKKNLRTCGDCHTVMKFASEIFAREIIVRDINRFHHFTNGICSCGDY 555

Query: 610 W 610
           W
Sbjct: 556 W 556



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 109/249 (43%), Gaps = 24/249 (9%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y   L  CA          +H QII+ G  +   + ++LI  Y KC  +  A  + EE  
Sbjct: 188 YSSVLHSCANLAALYQGTLIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETE 247

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLG- 124
            R+ V W +I+ A  Q       + +F  ML  + ++PD+  F S++ AC   G    G 
Sbjct: 248 DRNVVCWTAIIAACQQHGHANWVVELFEQMLR-EGIKPDYITFVSVLSACSHTGRVEEGF 306

Query: 125 ------KQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAM 177
                  +VH  +   P  +     + +VD+ ++ G  + A+   + + +K   S W A+
Sbjct: 307 FYFNSMIKVHGIY---PGHEH---YACIVDLLSRAGELDRAKRFIELMPIKPDASVWGAL 360

Query: 178 LSAYARSGR----KKDAMEIFEQAPVR--NLFLWTALVS--GLVQSRNEIDAFYSFIEMR 229
           LSA          K+ A+++F+  P    N  L   +++  G++   +E+      I +R
Sbjct: 361 LSACRNHSNLIMGKEVALKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVR 420

Query: 230 RE-GVDIVD 237
           +E G   +D
Sbjct: 421 KEPGCSWID 429



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 94/226 (41%), Gaps = 33/226 (14%)

Query: 228 MRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCS 287
           MRR GV   +    S+++ AC +      G+Q+H LV   G+ + +F+ +A+VDMYAKC 
Sbjct: 1   MRRSGV-YPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCC 59

Query: 288 DIIAAKDIFGRM--------RRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNE 339
           D++ A+ +F  M           D VS++S+    A  G  E    ++   +  GV    
Sbjct: 60  DMLMAEKVFEEMPTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNLV 119

Query: 340 VTFVGLIYACSHVGLVGKGRKLFKS-----------MIEDYGITPSLQHYTCLLDLLSRS 388
                L       GL     KLF +           MI  Y    + +       ++ R 
Sbjct: 120 YINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRK 179

Query: 389 GHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLL 434
           G +             PDE +++++L +C +      GT + N ++
Sbjct: 180 GSI-------------PDEASYSSVLHSCANLAALYQGTLIHNQII 212



 Score = 43.5 bits (101), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 50/211 (23%), Positives = 90/211 (42%), Gaps = 30/211 (14%)

Query: 330 MVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSG 389
           M  +GV PN  TF  ++ AC+       G ++  S++  +G    +   + L+D+ ++  
Sbjct: 1   MRRSGVYPNHYTFSAVLSACTDTTASVHGEQM-HSLVWKHGFLAEVFVVSALVDMYAKCC 59

Query: 390 HLDEAENLIKAMPF-------EPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPS 442
            +  AE + + MP          DE +++++ SAC +  N E G +V    L L   +  
Sbjct: 60  DMLMAEKVFEEMPTLLLENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGVWNL- 118

Query: 443 SYI--LLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLK 500
            YI   LS++Y    ++  V+K+       +V              + +  A   +H  +
Sbjct: 119 VYINNSLSDMYGKCGLFNDVAKLFSNTGARDVV-----------TWNIMIMAYVYNHNYE 167

Query: 501 DEIFELLTELDAEMKRRGYVPDT---SSVLH 528
           D            M+R+G +PD    SSVLH
Sbjct: 168 DACNSFWM-----MRRKGSIPDEASYSSVLH 193


>gi|15237212|ref|NP_200075.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
 gi|75180446|sp|Q9LTF4.1|PP429_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g52630
 gi|8953718|dbj|BAA98081.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008860|gb|AED96243.1| mitochondrial RNA editing factor 1 [Arabidopsis thaliana]
          Length = 588

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 223/598 (37%), Positives = 330/598 (55%), Gaps = 36/598 (6%)

Query: 14  ARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWA 73
           AR +  +    LH  ++K GL     + N LI+ Y K  L   +    E+ PQ+   +W+
Sbjct: 26  ARTRSTIKGLQLHGYVVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSSTTWS 85

Query: 74  SILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           SI++ + Q  LP  ++     M+A   L+PD  V  S  K+C  L    +G+ VH C  +
Sbjct: 86  SIISCFAQNELPWMSLEFLKKMMA-GNLRPDDHVLPSATKSCAILSRCDIGRSVH-CLSM 143

Query: 134 SPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
               D DV V SSLVDMYAKCG                          YAR        +
Sbjct: 144 KTGYDADVFVGSSLVDMYAKCGEI-----------------------VYAR--------K 172

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +F++ P RN+  W+ ++ G  Q     +A + F E   E + + D    SS++  CAN  
Sbjct: 173 MFDEMPQRNVVTWSGMMYGYAQMGENEEALWLFKEALFENLAVND-YSFSSVISVCANST 231

Query: 253 VLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
           +LELG+QIHGL I   ++S  F+ +++V +Y+KC     A  +F  +  K++  W +++ 
Sbjct: 232 LLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNLGIWNAMLK 291

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGIT 372
             AQH   ++ + L+  M  +G+KPN +TF+ ++ ACSH GLV +GR  F  M E   I 
Sbjct: 292 AYAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNACSHAGLVDEGRYYFDQMKESR-IE 350

Query: 373 PSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANH 432
           P+ +HY  L+D+L R+G L EA  +I  MP +P E  W ALL++C  H+NTE+    A+ 
Sbjct: 351 PTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTELAAFAADK 410

Query: 433 LLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYA 492
           +  L P     +I LSN YA+   ++  +K RKL+     KKE G S++E     H F A
Sbjct: 411 VFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAA 470

Query: 493 GETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGL 552
           GE  H    EI+E L EL  EM++ GY+ DTS VL +++  EK + + +HSERLA+A+GL
Sbjct: 471 GERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGL 530

Query: 553 LKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           +       +RV+KNLRVCGDCH  +K +S  T+R I+VRD  R+H F+DGKCSCND+W
Sbjct: 531 ITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCNDYW 588



 Score = 58.5 bits (140), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 6/195 (3%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           + VCA   +    + +H   IK        + ++L+  Y KC + + A+ +  E+P ++ 
Sbjct: 224 ISVCANSTLLELGRQIHGLSIKSSFDSSSFVGSSLVSLYSKCGVPEGAYQVFNEVPVKNL 283

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
             W ++L AY Q +  QK I +F  M  L  ++P+   F +++ AC   G    G+    
Sbjct: 284 GIWNAMLKAYAQHSHTQKVIELFKRM-KLSGMKPNFITFLNVLNACSHAGLVDEGRYYFD 342

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSGRKK 188
               S     D   +SLVDM  + G    A  V  ++ +  + S W A+L++       +
Sbjct: 343 QMKESRIEPTDKHYASLVDMLGRAGRLQEALEVITNMPIDPTESVWGALLTSCTVHKNTE 402

Query: 189 ----DAMEIFEQAPV 199
                A ++FE  PV
Sbjct: 403 LAAFAADKVFELGPV 417


>gi|359479564|ref|XP_002274514.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 616

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 216/601 (35%), Positives = 343/601 (57%), Gaps = 18/601 (2%)

Query: 22  VKTLHAQIIKLGL--HQYGPLPNTLIDAYGKCDL------VQYAHHLLEEMPQRDHVSWA 73
           ++ +HAQ+IK  L  HQ+     T+      C L      + YA  +   +   +   + 
Sbjct: 22  LRQIHAQMIKTNLLNHQF-----TVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFF 76

Query: 74  SILTAYNQANLPQKTISIFSTMLA-LDKLQPDHFVFASLVKACGSLGATRLGKQVHACFV 132
           +++  ++  + P +++ +++ ML+ L+      F   S++KACG L A   G+QVH   +
Sbjct: 77  ALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGKLLAFDEGRQVHGQVL 136

Query: 133 LSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAME 192
            +    D  V +S+V MY   G    AR VFD +  ++ VSW +M++ Y ++G  + A +
Sbjct: 137 KTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELAKK 196

Query: 193 IFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFA 252
           +FE    +++  WT+++S  VQ+R  + A   F EM   G+    P ++S ++ A A+  
Sbjct: 197 VFETMSDKDVVTWTSMISAYVQNRCPMKALDLFREMLSLGLRPDGPAIVS-VLSAIADLG 255

Query: 253 VLELGKQIHGLVIALGYE-SCLFISNAIVDMYAKCSDIIAAKDIFGRM-RRKDVVSWTSI 310
            +E GK +H  V     E S  FI +A++DMY+KC  I  A  +F  +  R+++  W S+
Sbjct: 256 FVEEGKWLHAYVSMNKIELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSM 315

Query: 311 IVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYG 370
           I G A HG A E L ++ EM    ++PNE+TF+GL+  CSH GLV +G+  F+SM E Y 
Sbjct: 316 ISGLAIHGLAREALDIFVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYK 375

Query: 371 ITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVA 430
           I P +QHY C++DL  R+G L++A  +I+ MPFE D   W A+LSA   H + E+G   A
Sbjct: 376 IVPRIQHYGCMIDLFGRAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAA 435

Query: 431 NHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIF 490
              + L P+D SSY+LLSN+YA A  W  V+K+R +M    VKK  G S +      H F
Sbjct: 436 LRAIELAPDDSSSYVLLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCSSMLVNGKVHEF 495

Query: 491 YAG-ETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVA 549
             G E       ++   + E+ + +K +GY PD + VL D+E + KE  L  HSE++A+A
Sbjct: 496 LLGKELDSSYSGQVLAKIAEVVSRLKLQGYEPDLTQVLLDIEDEGKESLLNLHSEKMAIA 555

Query: 550 YGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDF 609
           +GL+       + +VKNLRVC DCH  MK++S++  R+I++RD  R+HHF++G CSCN++
Sbjct: 556 FGLIHINKSAPIHIVKNLRVCCDCHCFMKLVSKVYNRQIIMRDQNRFHHFENGCCSCNEY 615

Query: 610 W 610
           W
Sbjct: 616 W 616


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 215/610 (35%), Positives = 321/610 (52%), Gaps = 43/610 (7%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           Y+  L+ C         K +H+ +I+  L+    +   + + Y +C  ++ A  + + M 
Sbjct: 191 YMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMD 250

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
            ++ V+W  ++  Y QA   +  + +F+ M A++ ++ D FVF+ ++K C  L    +G+
Sbjct: 251 AQNAVTWTGLMVGYTQAKKLEVALELFARM-AMEGVELDEFVFSIVLKVCCGLEDWDMGR 309

Query: 126 QVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSG 185
           Q+H+  V      +  V + LVD Y KCG   +A   F  I   N VSW+          
Sbjct: 310 QIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWS---------- 359

Query: 186 RKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIV 245
                                AL+SG  QS    D    F  +R EGV +++  + +S+ 
Sbjct: 360 ---------------------ALISGFSQSGRLEDCIKIFTSLRSEGV-VLNSFIYTSVF 397

Query: 246 GACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVV 305
            ACA  A L +G Q HG  I  G  S L+  +A+V MY+KC  +  A+  F  +   D V
Sbjct: 398 QACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAV 457

Query: 306 SWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSM 365
           +WT+II G A HG A E L  +  M S GV+PN VTF+ ++ ACSH GLV + ++   SM
Sbjct: 458 AWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSM 517

Query: 366 IEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
             DYG+ P++ HY C++D  SR+G L EA  LI  MPFEPD  +W +LL  C  H + ++
Sbjct: 518 SRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKL 577

Query: 426 GTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGK 485
           G   A +L  L P D + YILL N+Y++   W+    VRKLM+  E+KKE   S+I    
Sbjct: 578 GKIAAENLFRLDPGDTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVKG 637

Query: 486 GSHIFYAGETSHPLKDEIFELLTE-----LDAEMKRRGYVPDTSSVLHDMEQKEKERQLF 540
             H F  G+  HP  + I+  L E     +D+ ++      D S  L       ++ QL 
Sbjct: 638 QVHRFVVGDRHHPQTEAIYSKLEEFKCSVIDSPVRLLNEEDDVSCSL-----SARKEQLL 692

Query: 541 WHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFK 600
            HSE+LA+A+GL+ +     + V KNLR C DCH   K +S +T R+IVVRD+TR+HHFK
Sbjct: 693 DHSEKLAIAFGLISTEDNAPILVFKNLRACRDCHEFGKQVSMVTGRQIVVRDSTRFHHFK 752

Query: 601 DGKCSCNDFW 610
            GKCSCND+W
Sbjct: 753 SGKCSCNDYW 762



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 105/413 (25%), Positives = 200/413 (48%), Gaps = 35/413 (8%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
              C + +     + +H ++ +   +  G + N L+  Y  C        + +EM  ++ 
Sbjct: 94  FEACGKLRSLADGRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNL 153

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           VSW  +++AY +    +K I +FS M A   ++P+  V+ SL+++C       LGKQ+H+
Sbjct: 154 VSWVIVISAYAKNGELEKAIRLFSDMQA-SGIRPNSAVYMSLLQSCLGPSFLELGKQIHS 212

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + +    +  V++++ +MY +CG    A+ VFD +  +N+V+WT ++  Y ++ + + 
Sbjct: 213 HVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEV 272

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
           A+E+F +                               M  EGV++ D  V S ++  C 
Sbjct: 273 ALELFAR-------------------------------MAMEGVEL-DEFVFSIVLKVCC 300

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
                ++G+QIH  ++ LG ES + +   +VD Y KC DI +A   FGR+   + VSW++
Sbjct: 301 GLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSA 360

Query: 310 IIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDY 369
           +I G +Q G+ E+ + ++  + S GV  N   +  +  AC+    +  G +     I+  
Sbjct: 361 LISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIK-R 419

Query: 370 GITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRN 422
           G+   L   + ++ + S+ G LD A    +++  EPD   W A++S   +H N
Sbjct: 420 GLVSYLYGESAMVTMYSKCGRLDYARRAFESID-EPDAVAWTAIISGYAYHGN 471



 Score = 99.0 bits (245), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 132/281 (46%), Gaps = 8/281 (2%)

Query: 177 MLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIV 236
           +L  Y   G   D  ++F++  ++NL  W  ++S   ++     A   F +M+  G+   
Sbjct: 128 LLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIR-P 186

Query: 237 DPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIF 296
           +  V  S++ +C   + LELGKQIH  VI     + + +  AI +MY +C  +  AK +F
Sbjct: 187 NSAVYMSLLQSCLGPSFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVF 246

Query: 297 GRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVG 356
             M  ++ V+WT ++VG  Q  + E  L L+  M   GV+ +E  F  ++  C  +    
Sbjct: 247 DGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWD 306

Query: 357 KGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSA 416
            GR++  S I   G    +   T L+D   + G ++ A      +  EP++ +W+AL+S 
Sbjct: 307 MGRQI-HSHIVKLGAESEVSVGTPLVDFYVKCGDIESAYRSFGRIS-EPNDVSWSALISG 364

Query: 417 CKHHRNTEMGTRVANHLLSLKPEDP--SSYILLSNVYASAA 455
                  E   ++     SL+ E    +S+I  S   A AA
Sbjct: 365 FSQSGRLEDCIKI---FTSLRSEGVVLNSFIYTSVFQACAA 402


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  387 bits (993), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/604 (35%), Positives = 324/604 (53%), Gaps = 37/604 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
            +  A  ++ +T K +HA  +K G      +  +  D Y K  L   A  L +E+P+R+ 
Sbjct: 65  FKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNL 124

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
            +W + ++       P++ I  F     +D   P+   F + + AC       LG Q+H 
Sbjct: 125 ETWNAFISNSVTDGRPREAIEAFIEFRRIDG-HPNSITFCAFLNACSDWLHLNLGMQLHG 183

Query: 130 CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
             + S F  D  V + L+D Y KC    ++  +F  +  KN+VSW ++++AY        
Sbjct: 184 LVLRSGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAY-------- 235

Query: 190 AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
                                  VQ+  +  A   ++  R++ V+  D  ++SS++ ACA
Sbjct: 236 -----------------------VQNHEDEKASVLYLRSRKDIVETSD-FMISSVLSACA 271

Query: 250 NFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTS 309
             A LELG+ IH   +    E  +F+ +A+VDMY KC  I  ++  F  M  K++V+  S
Sbjct: 272 GMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNLVTRNS 331

Query: 310 IIVGTAQHGQAEETLALYDEMV--SAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIE 367
           +I G A  GQ +  LAL++EM     G  PN +TFV L+ ACS  G V  G K+F SM  
Sbjct: 332 LIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIFDSMRS 391

Query: 368 DYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGT 427
            YGI P  +HY+C++D+L R+G ++ A   IK MP +P    W AL +AC+ H   ++G 
Sbjct: 392 TYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMHGKPQLGL 451

Query: 428 RVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGS 487
             A +L  L P+D  +++LLSN +A+A  W   + VR+ +  + +KK  GYS+I      
Sbjct: 452 LAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQV 511

Query: 488 HIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLA 547
           H F A + SH L  EI   L +L  EM+  GY PD    L+D+E++EK  ++  HSE+LA
Sbjct: 512 HAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLA 571

Query: 548 VAYGLLKSVPGTV-LRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSC 606
           +A+GLL S+P +V +R+ KNLR+CGDCH   K +S   KREI+VRD  R+H FKDG CSC
Sbjct: 572 LAFGLL-SLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSC 630

Query: 607 NDFW 610
            D+W
Sbjct: 631 KDYW 634



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/461 (24%), Positives = 194/461 (42%), Gaps = 74/461 (16%)

Query: 48  YGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFV 107
           Y K D  + A  +L   P R+ VSW S+++   Q       +  F  M   + + P+ F 
Sbjct: 2   YSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRR-EGVVPNDFT 60

Query: 108 FASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIK 167
           F    KA  SL     GKQ+HA  V      D  V  S  DMY K  L ++AR       
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDAR------- 113

Query: 168 LKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIE 227
                                   ++F++ P RNL  W A +S  V      +A  +FIE
Sbjct: 114 ------------------------KLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIE 149

Query: 228 MRREGVDI-VDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKC 286
            RR  +D   + +   + + AC+++  L LG Q+HGLV+  G+++ + + N ++D Y KC
Sbjct: 150 FRR--IDGHPNSITFCAFLNACSDWLHLNLGMQLHGLVLRSGFDTDVSVCNGLIDFYGKC 207

Query: 287 SDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLI 346
             I +++ IF  M  K+ VSW S++    Q+ + E+   LY       V+ ++     ++
Sbjct: 208 KQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSRKDIVETSDFMISSVL 267

Query: 347 YACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMP---- 402
            AC+ +  +  GR +    ++   +  ++   + L+D+  + G ++++E     MP    
Sbjct: 268 SACAGMAGLELGRSIHAHAVKAC-VERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEKNL 326

Query: 403 ----------------------FE----------PDEPTWAALLSACKHHRNTEMGTRVA 430
                                 FE          P+  T+ +LLSAC      E G ++ 
Sbjct: 327 VTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMKIF 386

Query: 431 NHLLSLKPEDPSS--YILLSNVYASAAMWQHVSKVRKLMSV 469
           + + S    +P +  Y  + ++   A M +   +  K M +
Sbjct: 387 DSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPI 427



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 2/134 (1%)

Query: 282 MYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVT 341
           MY+K     +A+ +      ++VVSWTS+I G AQ+G     L  + EM   GV PN+ T
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 342 FVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
           F     A + + L   G+++    ++   I       +   D+  ++   D+A  L   +
Sbjct: 61  FPCAFKAVASLRLPVTGKQIHALAVKCGRILDVFVGCSA-FDMYCKTRLRDDARKLFDEI 119

Query: 402 PFEPDEPTWAALLS 415
           P E +  TW A +S
Sbjct: 120 P-ERNLETWNAFIS 132


>gi|15220333|ref|NP_171976.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75192500|sp|Q9MAT2.1|PPR10_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g04840
 gi|7211995|gb|AAF40466.1|AC004809_24 F13M7.17 [Arabidopsis thaliana]
 gi|332189629|gb|AEE27750.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 217/643 (33%), Positives = 345/643 (53%), Gaps = 43/643 (6%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           SH++  +  C   +   +++ +HAQI++ G+     +   L+          Y+  +   
Sbjct: 30  SHFISLIHAC---KDTASLRHVHAQILRRGVLS-SRVAAQLVSCSSLLKSPDYSLSIFRN 85

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
             +R+     +++    +    + ++  F  ML L  ++PD   F  ++K+   LG   L
Sbjct: 86  SEERNPFVLNALIRGLTENARFESSVRHFILMLRLG-VKPDRLTFPFVLKSNSKLGFRWL 144

Query: 124 GKQVHACFVLSPFCD-DDVVKSSLVDMYAKCGLPNNARAVFD------------------ 164
           G+ +HA   L  F D D  V+ SLVDMYAK G   +A  VF+                  
Sbjct: 145 GRALHAA-TLKNFVDCDSFVRLSLVDMYAKTGQLKHAFQVFEESPDRIKKESILIWNVLI 203

Query: 165 -----------------SIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTA 207
                            S+  +NS SW+ ++  Y  SG    A ++FE  P +N+  WT 
Sbjct: 204 NGYCRAKDMHMATTLFRSMPERNSGSWSTLIKGYVDSGELNRAKQLFELMPEKNVVSWTT 263

Query: 208 LVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIAL 267
           L++G  Q+ +   A  ++ EM  +G+   +   +++++ AC+    L  G +IHG ++  
Sbjct: 264 LINGFSQTGDYETAISTYFEMLEKGLK-PNEYTIAAVLSACSKSGALGSGIRIHGYILDN 322

Query: 268 GYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALY 327
           G +    I  A+VDMYAKC ++  A  +F  M  KD++SWT++I G A HG+  + +  +
Sbjct: 323 GIKLDRAIGTALVDMYAKCGELDCAATVFSNMNHKDILSWTAMIQGWAVHGRFHQAIQCF 382

Query: 328 DEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSR 387
            +M+ +G KP+EV F+ ++ AC +   V  G   F SM  DY I P+L+HY  ++DLL R
Sbjct: 383 RQMMYSGEKPDEVVFLAVLTACLNSSEVDLGLNFFDSMRLDYAIEPTLKHYVLVVDLLGR 442

Query: 388 SGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILL 447
           +G L+EA  L++ MP  PD  TWAAL  ACK H+       V+ +LL L PE   SYI L
Sbjct: 443 AGKLNEAHELVENMPINPDLTTWAALYRACKAHKGYRRAESVSQNLLELDPELCGSYIFL 502

Query: 448 SNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELL 507
              +AS    Q V K R  +     ++  G+SYIE     + F AG+ SH L  EI   L
Sbjct: 503 DKTHASKGNIQDVEKRRLSLQKRIKERSLGWSYIELDGQLNKFSAGDYSHKLTQEIGLKL 562

Query: 508 TELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNL 567
            E+ +   ++GY P     +HD+E++EKE     HSE+LA+  G L++ PGT +R++KNL
Sbjct: 563 DEIISLAIQKGYNPGADWSIHDIEEEEKENVTGIHSEKLALTLGFLRTAPGTTIRIIKNL 622

Query: 568 RVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
           R+CGDCH +MK +S+I++R+I++RDA ++HHFKDG+CSC D+W
Sbjct: 623 RICGDCHSLMKYVSKISQRDILLRDARQFHHFKDGRCSCGDYW 665


>gi|15218900|ref|NP_176180.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806498|sp|Q0WQW5.2|PPR85_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g59720, mitochondrial; Flags: Precursor
 gi|332195486|gb|AEE33607.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 638

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/612 (35%), Positives = 327/612 (53%), Gaps = 60/612 (9%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-------DLVQYAHHLLEEMPQRDHVSWAS 74
           +K LHA  ++     Y   P TL   YGK          V YA  + + +       W +
Sbjct: 64  LKQLHAFTLRT---TYPEEPATLF-LYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNT 119

Query: 75  ILTA-YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           ++ A  +  +  ++   ++  ML   +  PD   F  ++KAC  +     GKQVH   V 
Sbjct: 120 LIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVK 179

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
             F  D  V + L+ +Y  CG  + AR VFD                             
Sbjct: 180 HGFGGDVYVNNGLIHLYGSCGCLDLARKVFD----------------------------- 210

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
             + P R+L  W +++  LV+      A   F EM+R      D   + S++ ACA    
Sbjct: 211 --EMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEP--DGYTMQSVLSACAGLGS 266

Query: 254 LELGKQIHGLVIA---LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
           L LG   H  ++    +     + + N++++MY KC  +  A+ +F  M+++D+ SW ++
Sbjct: 267 LSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM 326

Query: 311 IVGTAQHGQAEETLALYDEMVSA--GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           I+G A HG+AEE +  +D MV     V+PN VTFVGL+ AC+H G V KGR+ F  M+ D
Sbjct: 327 ILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRD 386

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC-KHHRNTEMGT 427
           Y I P+L+HY C++DL++R+G++ EA +++ +MP +PD   W +LL AC K   + E+  
Sbjct: 387 YCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSE 446

Query: 428 RVANHLLSLKPEDPSS-------YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
            +A +++  K ++ SS       Y+LLS VYASA+ W  V  VRKLMS   ++KEPG S 
Sbjct: 447 EIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSS 506

Query: 481 IEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSS--VLHDMEQKEKERQ 538
           IE    SH F+AG+TSHP   +I++ L  +D  ++  GY+PD S   ++       KE  
Sbjct: 507 IEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYS 566

Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
           L  HSERLA+A+GL+   P T +R+ KNLRVC DCH V K+IS++   EI+VRD  R+HH
Sbjct: 567 LRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHH 626

Query: 599 FKDGKCSCNDFW 610
           FKDG CSC D+W
Sbjct: 627 FKDGSCSCLDYW 638


>gi|15226158|ref|NP_180932.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101013|sp|P93011.1|PP182_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33760
 gi|1707020|gb|AAC69141.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253787|gb|AEC08881.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 583

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 199/593 (33%), Positives = 331/593 (55%), Gaps = 38/593 (6%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQ 81
           ++ +HA +I  G  +   L   LI        + Y H L   +P  D   + S++ + ++
Sbjct: 25  LQQVHAHLIVTGYGRSRSLLTKLITLACSARAIAYTHLLFLSVPLPDDFLFNSVIKSTSK 84

Query: 82  ANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDV 141
             LP   ++ +  ML+   + P ++ F S++K+C  L A R+GK VH   V+S F  D  
Sbjct: 85  LRLPLHCVAYYRRMLS-SNVSPSNYTFTSVIKSCADLSALRIGKGVHCHAVVSGFGLDTY 143

Query: 142 VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRN 201
           V+++LV  Y+KCG    AR                               ++F++ P ++
Sbjct: 144 VQAALVTFYSKCGDMEGAR-------------------------------QVFDRMPEKS 172

Query: 202 LFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIH 261
           +  W +LVSG  Q+    +A   F +MR  G +  D     S++ ACA    + LG  +H
Sbjct: 173 IVAWNSLVSGFEQNGLADEAIQVFYQMRESGFE-PDSATFVSLLSACAQTGAVSLGSWVH 231

Query: 262 GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAE 321
             +I+ G +  + +  A++++Y++C D+  A+++F +M+  +V +WT++I     HG  +
Sbjct: 232 QYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQ 291

Query: 322 ETLALYDEMVS-AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTC 380
           + + L+++M    G  PN VTFV ++ AC+H GLV +GR ++K M + Y + P ++H+ C
Sbjct: 292 QAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVC 351

Query: 381 LLDLLSRSGHLDEAENLIKAM--PFEPDEPT-WAALLSACKHHRNTEMGTRVANHLLSLK 437
           ++D+L R+G LDEA   I  +    +   P  W A+L ACK HRN ++G  +A  L++L+
Sbjct: 352 MVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALE 411

Query: 438 PEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSH 497
           P++P  +++LSN+YA +     VS +R  M    ++K+ GYS IE    +++F  G+ SH
Sbjct: 412 PDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESH 471

Query: 498 PLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVP 557
               EI+  L  L +  K  GY P +  V+H +E++EKE  L +HSE+LAVA+GLLK+V 
Sbjct: 472 QETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTVD 531

Query: 558 GTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
              + +VKNLR+C DCH   K IS ++ R+I VRD  R+HHF++G CSC D+W
Sbjct: 532 -VAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLDYW 583



 Score = 58.9 bits (141), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 11/183 (6%)

Query: 6   YLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMP 65
           ++  L  CA+         +H  II  GL     L   LI+ Y +C  V  A  + ++M 
Sbjct: 211 FVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDVGKAREVFDKMK 270

Query: 66  QRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK 125
           + +  +W ++++AY      Q+ + +F+ M       P++  F +++ AC   G    G+
Sbjct: 271 ETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSACAHAGLVEEGR 330

Query: 126 QVH----ACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS----WTAM 177
            V+      + L P  +  V    +VDM  + G  + A      +      +    WTAM
Sbjct: 331 SVYKRMTKSYRLIPGVEHHVC---MVDMLGRAGFLDEAYKFIHQLDATGKATAPALWTAM 387

Query: 178 LSA 180
           L A
Sbjct: 388 LGA 390


>gi|359481819|ref|XP_002283419.2| PREDICTED: MATE efflux family protein 1 [Vitis vinifera]
          Length = 977

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 194/512 (37%), Positives = 299/512 (58%), Gaps = 44/512 (8%)

Query: 99  DKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNN 158
           + ++PD  +F S  KACG L    +G+ VH+  V + +  D  V SS+VDMYAKC     
Sbjct: 4   NGVRPDDHIFPSATKACGILSRCDIGQSVHSFAVKTGYDCDVFVGSSMVDMYAKC----- 58

Query: 159 ARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNE 218
                                     G   DA ++F++ P RN+  W+ ++ G  Q   +
Sbjct: 59  --------------------------GEIGDARKMFDEMPDRNVVSWSGMIYGYSQMGED 92

Query: 219 IDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNA 278
            +A   F +   E +D+ D    SS+V  C N  +LELGKQIHGL +   Y+S  F+ ++
Sbjct: 93  EEALRLFKQALIEDLDVND-FTFSSVVRVCGNSTLLELGKQIHGLCLKTSYDSSSFVGSS 151

Query: 279 IVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPN 338
           ++ +Y+KC  I  A  +F  +  +++  W ++++  AQH   E+   L+ +M   G+KPN
Sbjct: 152 LISLYSKCGVIEDAYLVFHEIPIRNLGMWNAMLIACAQHAHTEKAFDLFKQMEGVGMKPN 211

Query: 339 EVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLI 398
            +TF+ ++YACSH GLV KG+  F+ ++++YGI P  QHY  ++DLL R+G L +A ++I
Sbjct: 212 FITFLCVLYACSHAGLVEKGQFYFE-LMKEYGIEPGAQHYASMVDLLGRAGKLKDAVSII 270

Query: 399 KAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQ 458
           K MP EP E  W ALL+ C+ H +TE+ + VA+ +  L P           V ++A  ++
Sbjct: 271 KKMPMEPTESVWGALLTGCRIHGDTELASFVADRVFELGP-----------VSSAAGRYE 319

Query: 459 HVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRG 518
             ++ RK++    VKKE G S++E G   H F AG+ SHP   +I++ L EL  EM+R G
Sbjct: 320 EAARARKMLRDQGVKKETGLSWVEEGNRIHTFAAGDRSHPYTKDIYKKLEELGEEMERAG 379

Query: 519 YVPDTSSVLHDMEQKEKERQLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMK 578
           Y+ DTS VL +++ +EK + + +HSERLA+A+GL+   P   +RV+KNLRVCGDCH  +K
Sbjct: 380 YIADTSFVLQEVDGEEKNQTIRYHSERLAIAFGLISFPPERPIRVMKNLRVCGDCHTAIK 439

Query: 579 MISRITKREIVVRDATRYHHFKDGKCSCNDFW 610
            +S+   R I+VRD  R+H F+DG CSC D+W
Sbjct: 440 FMSKCCGRTIIVRDNNRFHRFEDGNCSCRDYW 471



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 146/313 (46%), Gaps = 34/313 (10%)

Query: 23  KTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQA 82
           +++H+  +K G      + ++++D Y KC  +  A  + +EMP R+ VSW+ ++  Y+Q 
Sbjct: 30  QSVHSFAVKTGYDCDVFVGSSMVDMYAKCGEIGDARKMFDEMPDRNVVSWSGMIYGYSQM 89

Query: 83  NLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVV 142
              ++ + +F   L ++ L  + F F+S+V+ CG+     LGKQ+H   + + +     V
Sbjct: 90  GEDEEALRLFKQAL-IEDLDVNDFTFSSVVRVCGNSTLLELGKQIHGLCLKTSYDSSSFV 148

Query: 143 KSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNL 202
            SSL+ +Y+KCG+  +A  VF  I ++N   W AML A A+    + A ++F+Q      
Sbjct: 149 GSSLISLYSKCGVIEDAYLVFHEIPIRNLGMWNAMLIACAQHAHTEKAFDLFKQ------ 202

Query: 203 FLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHG 262
                 + G+    N    F +F+                 ++ AC++  ++E G+    
Sbjct: 203 ------MEGVGMKPN----FITFL----------------CVLYACSHAGLVEKGQFYFE 236

Query: 263 LVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVS-WTSIIVGTAQHGQAE 321
           L+   G E       ++VD+  +   +  A  I  +M  +   S W +++ G   HG  E
Sbjct: 237 LMKEYGIEPGAQHYASMVDLLGRAGKLKDAVSIIKKMPMEPTESVWGALLTGCRIHGDTE 296

Query: 322 ETLALYDEMVSAG 334
               + D +   G
Sbjct: 297 LASFVADRVFELG 309



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 88/198 (44%), Gaps = 12/198 (6%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           +RVC    +    K +H   +K        + ++LI  Y KC +++ A+ +  E+P R+ 
Sbjct: 118 VRVCGNSTLLELGKQIHGLCLKTSYDSSSFVGSSLISLYSKCGVIEDAYLVFHEIPIRNL 177

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGK---Q 126
             W ++L A  Q    +K   +F  M  +  ++P+   F  ++ AC   G    G+   +
Sbjct: 178 GMWNAMLIACAQHAHTEKAFDLFKQMEGVG-MKPNFITFLCVLYACSHAGLVEKGQFYFE 236

Query: 127 VHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVS-WTAMLSAYARSG 185
           +   + + P        +S+VD+  + G   +A ++   + ++ + S W A+L+     G
Sbjct: 237 LMKEYGIEPGAQH---YASMVDLLGRAGKLKDAVSIIKKMPMEPTESVWGALLTGCRIHG 293

Query: 186 RKKDAM----EIFEQAPV 199
             + A      +FE  PV
Sbjct: 294 DTELASFVADRVFELGPV 311


>gi|296087599|emb|CBI34855.3| unnamed protein product [Vitis vinifera]
          Length = 956

 Score =  386 bits (992), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 213/613 (34%), Positives = 326/613 (53%), Gaps = 43/613 (7%)

Query: 25  LHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANL 84
           LH  +++ G +    +  +LI+ Y KC  +  A  L + M  RD V W+S++ AY     
Sbjct: 360 LHGYVVRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGR 419

Query: 85  PQKTISIFSTMLAL-------------DKLQPDHFVFASL--------VKACGSLGATRL 123
             + + IF  M+ +              ++QP   + +          VKA       R 
Sbjct: 420 GGEALEIFDQMIQVMQGITSCYQISMQPQVQPPLAITSCTLATHIPWKVKAFYMRAHFRW 479

Query: 124 GKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYAR 183
                  F   PF   D+ KS++       GL  ++R +            T     Y  
Sbjct: 480 LGHFWEIFPTYPFQAADMSKSNIFAY----GLQYDSRIL------------TKFAIMYVS 523

Query: 184 SGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVD------IVD 237
             R   A  +FE  P    FLW  ++ G       + +   + +M  +G+       I +
Sbjct: 524 FNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDNSGVIPN 583

Query: 238 PLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFG 297
            + + S++ AC N   L  G+  H  VI  G+E  + ++ AI+DMY+KC  +  A+ +F 
Sbjct: 584 RVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFD 643

Query: 298 RMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGK 357
               KD+V W+++I     HG   + + L+D+MV AGV+P+ VTF  ++ ACSH GL+ +
Sbjct: 644 ETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEE 703

Query: 358 GRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC 417
           G+  F+ M E++ I   L +Y C++DLL R+G L EA +LI+ MP EPD   W +LL AC
Sbjct: 704 GKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLLGAC 763

Query: 418 KHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPG 477
           + H N ++  ++A+HL  L P     ++LLSN+YA+ + W  V KVRK+M+     K  G
Sbjct: 764 RIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMMARRGANKIQG 823

Query: 478 YSYIEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKER 537
           +S +E+    H F  G+ SHP  ++++  L EL A MK  GYVP T  VLHD+E++ KE 
Sbjct: 824 FSLVEYDNQVHKFGVGDRSHPQWEKLYAKLEELAAPMKHLGYVPLTDFVLHDIEEEAKEA 883

Query: 538 QLFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYH 597
            L +HSERLA+A+GL+ + PGT LR+ KNLR+CGDCH  +K+IS+I  R I+VRD  R+H
Sbjct: 884 ALSYHSERLAIAFGLINTSPGTTLRITKNLRICGDCHNAIKLISKIVNRVILVRDMHRFH 943

Query: 598 HFKDGKCSCNDFW 610
            F+DG CSC D+W
Sbjct: 944 RFEDGVCSCGDYW 956



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 109/440 (24%), Positives = 194/440 (44%), Gaps = 81/440 (18%)

Query: 21  TVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYN 80
           +V  LH+Q+ K G+         L   Y KC  +Q A  + +E P  +   W S L +Y 
Sbjct: 19  SVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYC 78

Query: 81  QANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDD 140
           +    ++T+ +F  M+      PD+F     +KAC  L    LGK +H     +     D
Sbjct: 79  REKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSD 138

Query: 141 V-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAM---------------------- 177
           + V S+LV++Y+KCG    A  VF+  +  ++V WT+M                      
Sbjct: 139 MFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVM 198

Query: 178 --------------LSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLV--QSRNE-ID 220
                         L+ YA++G +K A  +F + P +++  W+ +++     ++ NE ++
Sbjct: 199 MDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIACYANNEAANEALN 258

Query: 221 AFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISNAIV 280
            F+  IE R E     + + + S + ACA    LE GK+IH + +               
Sbjct: 259 LFHEMIEKRFEP----NSVTVVSALQACAVSRNLEEGKKIHKIAV--------------- 299

Query: 281 DMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEV 340
                                KDVVSW +++ G AQ+G A +++ ++  M+S G++P+ V
Sbjct: 300 --------------------WKDVVSWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAV 339

Query: 341 TFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKA 400
             V ++ A S +G+  +   L   ++   G   ++     L++L S+ G L +A  L K 
Sbjct: 340 AVVKILAASSELGIFQQALCLHGYVVRS-GFNSNVFVGASLIELYSKCGSLGDAVKLFKG 398

Query: 401 MPFEPDEPTWAALLSACKHH 420
           M    D   W+++++A   H
Sbjct: 399 MIVR-DVVIWSSMIAAYGIH 417



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 148/295 (50%), Gaps = 11/295 (3%)

Query: 42  NTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKL 101
           + L++ Y KC  +  A  + EE  + D V W S++T Y Q N P++ +++FS M+ +D  
Sbjct: 143 SALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCF 202

Query: 102 QPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVK-SSLVDMYAKCGLPNNAR 160
             D  +  SL+      G  ++     A  + S   + DV+  S+++  YA     N A 
Sbjct: 203 DGDLPLVNSLLNLYAKTGCEKI-----AANLFSKMPEKDVISWSTMIACYANNEAANEAL 257

Query: 161 AVFDSIKLK----NSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSR 216
            +F  +  K    NSV+  + L A A S   ++  +I + A  +++  W AL+SG  Q+ 
Sbjct: 258 NLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKDVVSWVALLSGYAQNG 317

Query: 217 NEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELGKQIHGLVIALGYESCLFIS 276
               +   F  M  +G+   D + +  I+ A +   + +    +HG V+  G+ S +F+ 
Sbjct: 318 MAYKSMGVFRNMLSDGIQ-PDAVAVVKILAASSELGIFQQALCLHGYVVRSGFNSNVFVG 376

Query: 277 NAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMV 331
            +++++Y+KC  +  A  +F  M  +DVV W+S+I     HG+  E L ++D+M+
Sbjct: 377 ASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMI 431



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 160/341 (46%), Gaps = 28/341 (8%)

Query: 143 KSSLVDMYAKCGLPNNARAV-------FDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFE 195
           +  LVD++  C   NN R+V       F +  L ++   T + S YA+    + A ++F+
Sbjct: 4   RQVLVDLFQAC---NNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFD 60

Query: 196 QAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLE 255
           + P  N+ LW + +    + +   +    F  M     +  D   +   + ACA   +LE
Sbjct: 61  ETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLE 120

Query: 256 LGKQIHGLVIA---LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIV 312
           LGK IHG       +G  S +F+ +A+V++Y+KC  +  A  +F   +R D V WTS++ 
Sbjct: 121 LGKVIHGFAKKNDEIG--SDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVT 178

Query: 313 GTAQHGQAEETLALYDEMVSAGVKPNEVTFVG-LIYACSHVGLVGKGRKLFKSMIEDYGI 371
           G  Q+   EE LAL+ +MV       ++  V  L+   +  G       LF  M E   I
Sbjct: 179 GYQQNNDPEEALALFSQMVMMDCFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVI 238

Query: 372 TPSLQHYTCLLDLLSRSGHLDEAENLIKAM---PFEPDEPTWAALLSACKHHRNTEMGTR 428
           +     ++ ++   + +   +EA NL   M    FEP+  T  + L AC   RN E G +
Sbjct: 239 S-----WSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKK 293

Query: 429 VANHLLSLKPEDPSSYILLSNVYASAAM-WQHVSKVRKLMS 468
           +  H +++  +D  S++ L + YA   M ++ +   R ++S
Sbjct: 294 I--HKIAVW-KDVVSWVALLSGYAQNGMAYKSMGVFRNMLS 331


>gi|110737061|dbj|BAF00484.1| hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 218/612 (35%), Positives = 327/612 (53%), Gaps = 60/612 (9%)

Query: 22  VKTLHAQIIKLGLHQYGPLPNTLIDAYGKC-------DLVQYAHHLLEEMPQRDHVSWAS 74
           +K LHA  ++     Y   P TL   YGK          V YA  + + +       W +
Sbjct: 55  LKQLHAFTLRT---TYPEEPATLF-LYGKILQLSSSFSDVNYAFRVFDSIENHSSFMWNT 110

Query: 75  ILTA-YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVL 133
           ++ A  +  +  ++   ++  ML   +  PD   F  ++KAC  +     GKQVH   V 
Sbjct: 111 LIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVK 170

Query: 134 SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
             F  D  V + L+ +Y  CG  + AR VFD                             
Sbjct: 171 HGFGGDVYVNNGLIHLYGSCGCLDLARKVFD----------------------------- 201

Query: 194 FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
             + P R+L  W +++  LV+      A   F EM+R      D   + S++ ACA    
Sbjct: 202 --EMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFEP--DGYTMQSVLSACAGLGS 257

Query: 254 LELGKQIHGLVIA---LGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSI 310
           L LG   H  ++    +     + + N++++MY KC  +  A+ +F  M+++D+ SW ++
Sbjct: 258 LSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAM 317

Query: 311 IVGTAQHGQAEETLALYDEMVSA--GVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIED 368
           I+G A HG+AEE +  +D MV     V+PN VTFVGL+ AC+H G V KGR+ F  M+ D
Sbjct: 318 ILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRD 377

Query: 369 YGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSAC-KHHRNTEMGT 427
           Y I P+L+HY C++DL++R+G++ EA +++ +MP +PD   W +LL AC K   + E+  
Sbjct: 378 YCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSE 437

Query: 428 RVANHLLSLKPEDPSS-------YILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSY 480
            +A +++  K ++ SS       Y+LLS VYASA+ W  V  VRKLMS   ++KEPG S 
Sbjct: 438 EIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSS 497

Query: 481 IEFGKGSHIFYAGETSHPLKDEIFELLTELDAEMKRRGYVPDTSS--VLHDMEQKEKERQ 538
           IE    SH F+AG+TSHP   +I++ L  +D  ++  GY+PD S   ++       KE  
Sbjct: 498 IEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYS 557

Query: 539 LFWHSERLAVAYGLLKSVPGTVLRVVKNLRVCGDCHIVMKMISRITKREIVVRDATRYHH 598
           L  HSERLA+A+GL+   P T +R+ KNLRVC DCH V K+IS++   EI+VRD  R+HH
Sbjct: 558 LRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHH 617

Query: 599 FKDGKCSCNDFW 610
           FKDG CSC D+W
Sbjct: 618 FKDGSCSCLDYW 629


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 202/505 (40%), Positives = 294/505 (58%), Gaps = 17/505 (3%)

Query: 19   ALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTA 78
            AL  K+ HA+ + +G        + L+D Y KC+  + A  + E MP+R+ VSW S++T 
Sbjct: 916  ALVSKSPHAKDVYIG--------SALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITC 967

Query: 79   YNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSP-FC 137
            Y Q     + + +F +M+      PD    AS++ AC  L A R G+QVHA  V S  F 
Sbjct: 968  YEQNGPVGEALVLFVSMMKA-GFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFR 1026

Query: 138  DDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQA 197
            +D V+ ++LVDMYAKCG    AR VFD +  ++ VS T++++ YARS   +DA  +F Q 
Sbjct: 1027 EDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQM 1086

Query: 198  PVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAVLELG 257
              +N+  W  L++   Q+  E +A   F+ ++RE V         +++ AC N A L+LG
Sbjct: 1087 VEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESV-WPTHYTYGNVLNACGNVADLQLG 1145

Query: 258  KQIH------GLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSII 311
            +Q H      G     G ES +F+ N++VDMY K   I     +F RM  +D VSW ++I
Sbjct: 1146 QQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMI 1205

Query: 312  VGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGI 371
            VG AQ+G+A++ L L++ M+ +   P+ VT +G++ AC H GLV +GR+ F+SM ED+GI
Sbjct: 1206 VGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACGHSGLVEEGRRYFRSMTEDHGI 1265

Query: 372  TPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVAN 431
             PS  HYTC++DLL R+GHL E E LIK M  EPD   WA+LL +C+ H+N EMG   A 
Sbjct: 1266 IPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLWASLLGSCRLHKNVEMGEWAAG 1325

Query: 432  HLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMSVMEVKKEPGYSYIEFGKGSHIFY 491
             L  L P +   Y+LLSN+YA    W  V +VR  M    V K+PG S+IE G+   +F 
Sbjct: 1326 KLFELDPRNSGPYVLLSNMYAELGKWADVFRVRSSMKHRGVSKQPGCSWIEIGRKVSVFL 1385

Query: 492  AGETSHPLKDEIFELLTELDAEMKR 516
            A +  HP K+EI  +L  +  +M R
Sbjct: 1386 ARDNGHPCKNEIHAILRIIQMQMSR 1410



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 126/473 (26%), Positives = 212/473 (44%), Gaps = 72/473 (15%)

Query: 8   HRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHL------- 60
           H +  C  +      + +HA +++ G   +  + ++++D Y KC  +  A  L       
Sbjct: 257 HAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMK 316

Query: 61  ------------------------LEEMPQRDHVSWASILTAYNQANLPQKTISIFSTML 96
                                    E M +R+ VSW ++LT Y ++      + +F  M 
Sbjct: 317 DMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMR 376

Query: 97  ALDKLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLP 156
             +  + D     S++ AC  +     G++VHA  +   F    ++K++LV MY+KCG  
Sbjct: 377 Q-ETREFDAITLGSVLSACTGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCL 435

Query: 157 NNARA--VFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQ 214
            +A    +F+    ++S SW +++S Y R    + A+                       
Sbjct: 436 RSAERLLLFEMGSERDSYSWNSLISGYERHSMSEAAL----------------------- 472

Query: 215 SRNEIDAFYSFIEMRREGVDIVDP--LVLSSIVGACANFAVLELGKQIHGLVIALGYESC 272
                   Y+  +M+ E    V P     SS + ACAN  +L+ G QIH  +I  GYE  
Sbjct: 473 --------YALTKMQSE----VTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEID 520

Query: 273 LFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQHGQAEETLALYDEMVS 332
             + + ++DMY KC     +  IF     +DV+ W S+I G A  G+ E  L L+DEM  
Sbjct: 521 DILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQK 580

Query: 333 AGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITPSLQHYTCLLDLLSRSGHLD 392
            G+K + VTF+G + +C   G V  GR  F  M+ D  I P ++HY C+++LL + G + 
Sbjct: 581 QGIKADSVTFLGALVSCISEGHVRLGRSYFTLMM-DESIIPRIEHYECMIELLGKHGCMV 639

Query: 393 EAENLIKAMPFEPDEPTWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYI 445
           E E+ ++ MPFEP    W  +   C+ + N ++G R A  +    P  P  ++
Sbjct: 640 ELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAKCINDSNPLTPVQFV 692



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 125/421 (29%), Positives = 211/421 (50%), Gaps = 11/421 (2%)

Query: 10  LRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEEMPQRDH 69
           L  CA        + LH  I K        L   L+D YG C L+  A    +++ + + 
Sbjct: 158 LSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNA 217

Query: 70  VSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRLGKQVHA 129
           +SW  I+  Y+ A +    + +F  ML+   ++P  +  +  V AC    A   G+ +HA
Sbjct: 218 ISWNVIVRRYHLAGMGDMAVDMFFRMLSA-GVRPLGYTVSHAVLACRDNNALEEGRCIHA 276

Query: 130 CFVLSPFCDDDV-VKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKK 188
            FVL    +  V V+SS+VDMYAKCG  + A+++F+   +K+ V  T+++S  A  GR  
Sbjct: 277 -FVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIA 335

Query: 189 DAMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGAC 248
           DA  +FE    RNL  W A+++G ++S +   A   F +MR+E  +  D + L S++ AC
Sbjct: 336 DAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREF-DAITLGSVLSAC 394

Query: 249 ANFAVLELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKD--IFGRMRRKDVVS 306
                +  G+++H   I  G+ S   + NA+V MY+KC  + +A+   +F     +D  S
Sbjct: 395 TGILDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYS 454

Query: 307 WTSIIVGTAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMI 366
           W S+I G  +H  +E  L    +M S  V PN+ TF   + AC+++ L+ +G ++   MI
Sbjct: 455 WNSLISGYERHSMSEAALYALTKMQSE-VTPNQSTFSSALAACANIFLLKQGMQIHAYMI 513

Query: 367 -EDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAMPFEPDEPTWAALLSACKHHRNTEM 425
            + Y I   L+  + L+D+  +    D +  + +A P   D   W +++  C +    E 
Sbjct: 514 RKGYEIDDILR--SVLIDMYCKCRQFDYSIRIFEARP-SRDVILWNSMIFGCAYSGKGEY 570

Query: 426 G 426
           G
Sbjct: 571 G 571



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 194/442 (43%), Gaps = 100/442 (22%)

Query: 40   LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIF------- 92
            L NTL+ AY +   +  A  + +E+P  +  S+ ++L+A+ +   P    ++F       
Sbjct: 797  LLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDPD 856

Query: 93   ------------------STMLALDKLQPDHFV-----FASLVKACGSLGATRLGKQVHA 129
                                +L L  +  D FV     FAS + AC +   +R G QVHA
Sbjct: 857  QCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHA 916

Query: 130  CFVLSPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKD 189
                SP   D  + S+L+DMYAKC  P  AR VF+++  +N VSW ++++ Y ++G    
Sbjct: 917  LVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNG---- 972

Query: 190  AMEIFEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACA 249
                    PV                    +A   F+ M + G  + D + L+S++ ACA
Sbjct: 973  --------PVG-------------------EALVLFVSMMKAGF-VPDEVTLASVMSACA 1004

Query: 250  NFAVLELGKQIHGLVIALG-YESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWT 308
              A    G+Q+H  V+    +   + +SNA+VDMYAKC    AA+ +F RM  + VVS T
Sbjct: 1005 GLAADREGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSET 1064

Query: 309  SIIVG-------------------------------TAQHGQAEETLALYDEMVSAGVKP 337
            S+I G                                AQ+G+ EE L L+  +    V P
Sbjct: 1065 SLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWP 1124

Query: 338  NEVTFVGLIYACSHVGLVGKGRKLFKSMIE-----DYGITPSLQHYTCLLDLLSRSGHLD 392
               T+  ++ AC +V  +  G++    +++     D+G    +     L+D+  ++G +D
Sbjct: 1125 THYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSID 1184

Query: 393  EAENLIKAMPFEPDEPTWAALL 414
            +   + + M    D  +W A++
Sbjct: 1185 DGAKVFERMAAR-DNVSWNAMI 1205



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 190/420 (45%), Gaps = 72/420 (17%)

Query: 40  LPNTLIDAYGKCDLVQYAHHLLEEMPQRDHVSWASILTAYNQANLPQKTISIFSTMLALD 99
           L N  I++   C  V  A  L + MP RD  SW +I+TA ++A  P + +S+FS M +L 
Sbjct: 87  LFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSL- 145

Query: 100 KLQPDHFVFASLVKACGSLGATRLGKQVHACFVLSPFCDDDVVKSSLVDMYAKCGLPNNA 159
            ++P     AS++  C         +Q+H       F  + ++ ++LVD+Y  C L  +A
Sbjct: 146 GIRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADA 205

Query: 160 RAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEIFEQAPVRNLFLWTALVSGLVQSRNEI 219
           R  FD I   N++SW  ++  Y  +G    A+++F          +  L +G        
Sbjct: 206 RRAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMF----------FRMLSAG-------- 247

Query: 220 DAFYSFIEMRREGVDIVDPL--VLSSIVGACANFAVLELGKQIHGLVIALGYESCLFISN 277
                           V PL   +S  V AC +   LE G+ IH  V+  GYE  + + +
Sbjct: 248 ----------------VRPLGYTVSHAVLACRDNNALEEGRCIHAFVLRHGYEHHVHVRS 291

Query: 278 AIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVGTAQ-----------HGQAEETLAL 326
           ++VDMYAKC  + AA+ +F     KD+V  TSI+ G A             G  E  L  
Sbjct: 292 SVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKERNLVS 351

Query: 327 YDEMVSAGVKPNEVTFVGLIY--------------------ACSHVGLVGKGRKLFKSMI 366
           ++ M++  ++  ++T   L++                    AC+ +  +GKG ++    I
Sbjct: 352 WNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEVHAFAI 411

Query: 367 E-DYGITPSLQHYTCLLDLLSRSGHLDEAENLIK-AMPFEPDEPTWAALLSACKHHRNTE 424
           +  +  +P L++   L+ + S+ G L  AE L+   M  E D  +W +L+S  + H  +E
Sbjct: 412 KCGFFSSPILKN--ALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHSMSE 469



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 80/268 (29%), Positives = 135/268 (50%), Gaps = 1/268 (0%)

Query: 134  SPFCDDDVVKSSLVDMYAKCGLPNNARAVFDSIKLKNSVSWTAMLSAYARSGRKKDAMEI 193
            SPF  +  + ++LV  YA+ G   +AR VFD I   N+ S+ A+LSA+AR GR  DA  +
Sbjct: 789  SPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARAL 848

Query: 194  FEQAPVRNLFLWTALVSGLVQSRNEIDAFYSFIEMRREGVDIVDPLVLSSIVGACANFAV 253
            F   P  +   + A+++ L Q     DA      M  +   +++    +S + ACA    
Sbjct: 849  FHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDF-VLNAYSFASALSACAAEKD 907

Query: 254  LELGKQIHGLVIALGYESCLFISNAIVDMYAKCSDIIAAKDIFGRMRRKDVVSWTSIIVG 313
               G Q+H LV    +   ++I +A++DMYAKC     A+ +F  M  +++VSW S+I  
Sbjct: 908  SRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITC 967

Query: 314  TAQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACSHVGLVGKGRKLFKSMIEDYGITP 373
              Q+G   E L L+  M+ AG  P+EVT   ++ AC+ +    +GR++   +++      
Sbjct: 968  YEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFRE 1027

Query: 374  SLQHYTCLLDLLSRSGHLDEAENLIKAM 401
             +     L+D+ ++ G    A  +   M
Sbjct: 1028 DMVLSNALVDMYAKCGRTRAARCVFDRM 1055



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 1/122 (0%)

Query: 4   SHYLHRLRVCARHQIALTVKTLHAQIIKLGLHQYGPLPNTLIDAYGKCDLVQYAHHLLEE 63
           S +   L  CA   +      +HA +I+ G      L + LID Y KC    Y+  + E 
Sbjct: 487 STFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEA 546

Query: 64  MPQRDHVSWASILTAYNQANLPQKTISIFSTMLALDKLQPDHFVFASLVKACGSLGATRL 123
            P RD + W S++     +   +  + +F  M     ++ D   F   + +C S G  RL
Sbjct: 547 RPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQK-QGIKADSVTFLGALVSCISEGHVRL 605

Query: 124 GK 125
           G+
Sbjct: 606 GR 607


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.136    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,252,048,695
Number of Sequences: 23463169
Number of extensions: 373495939
Number of successful extensions: 1061210
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 8520
Number of HSP's successfully gapped in prelim test: 3058
Number of HSP's that attempted gapping in prelim test: 896585
Number of HSP's gapped (non-prelim): 58083
length of query: 610
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 461
effective length of database: 8,863,183,186
effective search space: 4085927448746
effective search space used: 4085927448746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)