BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 037713
(610 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z8L|A Chain A, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|B Chain B, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|C Chain C, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
pdb|1Z8L|D Chain D, Crystal Structure Of Prostate-Specific Membrane Antigen, A
Tumor Marker And Peptidase
Length = 695
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
++ +L SA K+ TE+ ++ + L +P ++++ Q + R +
Sbjct: 573 SFDSLFSAVKNF--TEIASKFSERLQDFDKSNPIVLRMMND--------QLMFLERAFID 622
Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELD-----AEMKRRGYV 520
+ + P Y ++ + SH YAGE+ + D +F++ +++D E+KR+ YV
Sbjct: 623 PLGLPDRPFYRHVIYAPSSHNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYV 679
>pdb|2C6C|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Gpi-18431
(S)-2-(4-Iodobenzylphosphonomethyl)- Pentanedioic Acid
pdb|2C6P|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With Phosphate Anion
pdb|2JBJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) In
Complex With 2-Pmpa (2-Phosphonomethyl-Pentanedioic
Acid)
pdb|2JBK|A Chain A, Membrane-bound Glutamate Carboxypeptidase Ii (gcpii) In
Complex With Quisqualic Acid (quisqualate,
Alpha-amino-3,5- Dioxo-1,2,4-oxadiazolidine-2-propanoic
Acid)
pdb|2C6G|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Glutamate
pdb|2CIJ|A Chain A, Membrane-Bound Glutamate Carboxypeptidase Ii (Gcpii) With
Bound Methionine
Length = 707
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
++ +L SA K+ TE+ ++ + L +P ++++ Q + R +
Sbjct: 585 SFDSLFSAVKNF--TEIASKFSERLQDFDKSNPIVLRMMND--------QLMFLERAFID 634
Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELD-----AEMKRRGYV 520
+ + P Y ++ + SH YAGE+ + D +F++ +++D E+KR+ YV
Sbjct: 635 PLGLPDRPFYRHVIYAPSSHNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYV 691
>pdb|3BXM|A Chain A, Structure Of An Inactive Mutant Of Human Glutamate
Carboxypeptidase Ii [gcpii(E424a)] In Complex With
N-Acetyl-Asp-Glu (Naag)
pdb|3SJE|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Aminononanoic Acid
pdb|3SJG|A Chain A, Human Glutamate Carboxypeptidase Ii (E424a Inactive Mutant
) In Complex With N-Acetyl-Aspartyl-Aminooctanoic Acid
pdb|3SJX|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(The E424a Inactive Mutant) In Complex With
N-Acetyl-Aspartyl-Methionine
Length = 709
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
++ +L SA K+ TE+ ++ + L +P ++++ Q + R +
Sbjct: 587 SFDSLFSAVKNF--TEIASKFSERLQDFDKSNPIVLRMMND--------QLMFLERAFID 636
Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELD-----AEMKRRGYV 520
+ + P Y ++ + SH YAGE+ + D +F++ +++D E+KR+ YV
Sbjct: 637 PLGLPDRPFYRHVIYAPSSHNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYV 693
>pdb|2OOT|A Chain A, A High Resolution Structure Of Ligand-Free Human Glutamate
Carboxypeptidase Ii
pdb|2OR4|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii In Complex With Quisqualic Acid
pdb|2PVV|A Chain A, Structure Of Human Glutamate Carboxypeptidase Ii (Gcpii)
In Complex With L-Serine-O-Sulfate
pdb|2PVW|A Chain A, A High Resolution Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In Complex With
2-(Phosphonomethyl)pentanedioic Acid (2-Pmpa)
pdb|3BHX|A Chain A, X-ray Structure Of Human Glutamate Carboxypeptidase Ii
(gcpii) In Complex With A Transition State Analog Of
Asp-glu
pdb|3BI0|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Glu-Glu
pdb|3BI1|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In Complex With A Transition State Analog Of
Methotrexate-Glu
pdb|3D7D|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (gcpii) In A Complex With Dcfbd, A
Urea-based Inhibitor
pdb|3D7F|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcit, A
Urea-Based Inhibitor
pdb|3D7G|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcmc, A
Urea-Based Inhibitor
pdb|3D7H|A Chain A, A High Resolution Crystal Structure Of Human Glutamate
Carboxypeptidase Ii (Gcpii) In A Complex With Dcibzl, A
Urea-Based Inhibitor
pdb|3IWW|A Chain A, Crystal Structure Of Human Glutamate Carboxypeptidase Ii
(Gcpii) In A Complex With Dbibzl, A Urea-Based Inhibitor
pdb|2XEI|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P2
pdb|3SJF|A Chain A, X-Ray Structure Of Human Glutamate Carboxypeptidase Ii In
Complex With A Urea-Based Inhibitor (A25)
Length = 709
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
++ +L SA K+ TE+ ++ + L +P ++++ Q + R +
Sbjct: 587 SFDSLFSAVKNF--TEIASKFSERLQDFDKSNPIVLRMMND--------QLMFLERAFID 636
Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELD-----AEMKRRGYV 520
+ + P Y ++ + SH YAGE+ + D +F++ +++D E+KR+ YV
Sbjct: 637 PLGLPDRPFYRHVIYAPSSHNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYV 693
>pdb|2XEF|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P8
pdb|2XEG|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Antibody-Recruiting Molecule Arm-P4
pdb|2XEJ|A Chain A, Human Glutamate Carboxypeptidase Ii In Complex With
Arm-M4, Urea-Based Inhibitor
Length = 709
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
++ +L SA K+ TE+ ++ + L +P ++++ Q + R +
Sbjct: 587 SFDSLFSAVKNF--TEIASKFSERLQDFDKSNPIVLRMMND--------QLMFLERAFID 636
Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELD-----AEMKRRGYV 520
+ + P Y ++ + SH YAGE+ + D +F++ +++D E+KR+ YV
Sbjct: 637 PLGLPDRPFYRHVIYAPSSHNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYV 693
>pdb|3RBU|A Chain A, N-Terminally Avitev-Tagged Human Glutamate
Carboxypeptidase Ii In Complex With 2-Pmpa
Length = 739
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 409 TWAALLSACKHHRNTEMGTRVANHLLSLKPEDPSSYILLSNVYASAAMWQHVSKVRKLMS 468
++ +L SA K+ TE+ ++ + L +P ++++ Q + R +
Sbjct: 617 SFDSLFSAVKNF--TEIASKFSERLQDFDKSNPIVLRMMND--------QLMFLERAFID 666
Query: 469 VMEVKKEPGYSYIEFGKGSHIFYAGETSHPLKDEIFELLTELD-----AEMKRRGYV 520
+ + P Y ++ + SH YAGE+ + D +F++ +++D E+KR+ YV
Sbjct: 667 PLGLPDRPFYRHVIYAPSSHNKYAGESFPGIYDALFDIESKVDPSKAWGEVKRQIYV 723
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 315 AQHGQAEETLALYDEMVSAGVKPNEVTFVGLIYACS----------HVGLVGKGRKLFKS 364
++ G E L LYDE GV+ ++ + L+Y CS + GL +G +FK
Sbjct: 37 SKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL-SRGFDIFKQ 95
Query: 365 MIEDYGITPSLQHYTCLLDLLSRSGHLDEAENLIKAM 401
MI D + P+ +T L + A +++K M
Sbjct: 96 MIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQM 131
>pdb|2PW6|A Chain A, Crystal Structure Of Uncharacterized Protein Jw3007 From
Escherichia Coli K12
Length = 271
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 12/76 (15%)
Query: 34 LHQYGPLPNTLID----AYGKCDLVQYAHHLLEEMPQR--------DHVSWASILTAYNQ 81
+H +G P L D A G L Q LL +P DH SW ++ Y
Sbjct: 74 IHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPIPVTLDKEAWGFDHGSWGVLIKXYPD 133
Query: 82 ANLPQKTISIFSTMLA 97
A++P +SI S+ A
Sbjct: 134 ADIPXVQLSIDSSKPA 149
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 501 DEIFELLTELDAEMKRRGYVPDTSSVLHDMEQKEKE 536
D+ + + L A ++ GY PDT+ L + E+K KE
Sbjct: 8 DDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKE 43
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,735,202
Number of Sequences: 62578
Number of extensions: 703092
Number of successful extensions: 1555
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1551
Number of HSP's gapped (non-prelim): 13
length of query: 610
length of database: 14,973,337
effective HSP length: 105
effective length of query: 505
effective length of database: 8,402,647
effective search space: 4243336735
effective search space used: 4243336735
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)